BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045087
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IB6|A Chain A, Crystal Structure Of An Uncharacterized Protein From
           Listeria Monocytogenes Serotype 4b
 pdb|3IB6|B Chain B, Crystal Structure Of An Uncharacterized Protein From
           Listeria Monocytogenes Serotype 4b
 pdb|3IB6|C Chain C, Crystal Structure Of An Uncharacterized Protein From
           Listeria Monocytogenes Serotype 4b
 pdb|3IB6|D Chain D, Crystal Structure Of An Uncharacterized Protein From
           Listeria Monocytogenes Serotype 4b
          Length = 189

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)

Query: 71  LDSIGLDKT--AFAAEAYSSNYM-KHYFDCHA-WVQEPYTCYADQILDIII-KFLMPSSR 125
           L+++ +DKT        + S+ +  +    HA W+Q P  C  D+ L ++   F++P   
Sbjct: 107 LNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFVIPVWD 166

Query: 126 LSEIKDKNYEMKKI 139
           L+++ +    +KKI
Sbjct: 167 LADVPEALLLLKKI 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,848,495
Number of Sequences: 62578
Number of extensions: 123479
Number of successful extensions: 370
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 1
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)