Query 045087
Match_columns 157
No_of_seqs 181 out of 1303
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:44:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 9.4E-22 2E-26 168.2 14.3 109 45-157 161-270 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 9.4E-22 2E-26 149.6 12.3 110 47-157 1-110 (287)
3 PLN03210 Resistant to P. syrin 99.7 1.4E-16 3.1E-21 140.8 13.7 114 35-157 177-305 (1153)
4 PRK00411 cdc6 cell division co 99.4 2.4E-12 5.2E-17 102.3 12.3 119 34-157 22-147 (394)
5 TIGR02928 orc1/cdc6 family rep 99.4 3.3E-12 7.2E-17 100.4 12.9 120 35-157 8-138 (365)
6 PF13191 AAA_16: AAA ATPase do 99.2 5.2E-11 1.1E-15 84.7 7.4 50 43-94 1-51 (185)
7 PF13401 AAA_22: AAA domain; P 99.2 8.7E-11 1.9E-15 79.3 6.5 87 65-157 4-96 (131)
8 COG1474 CDC6 Cdc6-related prot 99.1 9.4E-10 2E-14 86.8 12.0 114 38-157 13-132 (366)
9 cd01128 rho_factor Transcripti 99.1 2.3E-10 5E-15 85.8 7.3 92 65-157 16-112 (249)
10 TIGR03015 pepcterm_ATPase puta 99.1 2.4E-09 5.3E-14 80.8 12.9 85 65-157 43-132 (269)
11 PTZ00202 tuzin; Provisional 99.1 5.1E-09 1.1E-13 83.7 14.7 104 37-154 257-367 (550)
12 PTZ00112 origin recognition co 99.0 5.4E-09 1.2E-13 89.3 12.4 117 36-157 749-878 (1164)
13 PF01637 Arch_ATPase: Archaeal 99.0 1.3E-09 2.8E-14 79.9 7.1 58 44-105 1-58 (234)
14 PRK09376 rho transcription ter 98.9 1.4E-09 3.1E-14 85.8 5.8 89 64-157 168-265 (416)
15 cd00009 AAA The AAA+ (ATPases 98.9 2.6E-08 5.7E-13 67.3 9.7 58 45-106 1-58 (151)
16 TIGR00767 rho transcription te 98.8 1.3E-08 2.8E-13 80.7 7.6 93 64-157 167-264 (415)
17 PRK11331 5-methylcytosine-spec 98.8 6.6E-08 1.4E-12 77.7 10.4 71 41-115 174-244 (459)
18 KOG2543 Origin recognition com 98.8 1.2E-07 2.5E-12 74.3 10.5 112 41-157 5-124 (438)
19 PF05729 NACHT: NACHT domain 98.6 7.5E-08 1.6E-12 67.0 5.7 83 66-157 1-90 (166)
20 PF05496 RuvB_N: Holliday junc 98.6 1.7E-07 3.6E-12 69.0 6.0 54 40-95 22-78 (233)
21 TIGR00635 ruvB Holliday juncti 98.6 2.9E-07 6.4E-12 70.8 7.6 46 42-87 4-52 (305)
22 PRK04841 transcriptional regul 98.5 1.3E-06 2.7E-11 76.1 12.2 107 40-157 12-130 (903)
23 PF05621 TniB: Bacterial TniB 98.5 2.6E-06 5.6E-11 65.2 12.0 110 42-157 34-154 (302)
24 PRK04195 replication factor C 98.5 5.6E-07 1.2E-11 73.7 8.9 48 41-88 13-62 (482)
25 PRK09361 radB DNA repair and r 98.5 7.5E-07 1.6E-11 65.7 8.8 102 52-157 10-116 (225)
26 PRK00080 ruvB Holliday junctio 98.5 6.2E-07 1.3E-11 69.9 8.6 48 40-87 23-73 (328)
27 PRK13342 recombination factor 98.5 3.2E-07 7E-12 73.7 6.6 45 41-87 11-58 (413)
28 KOG2227 Pre-initiation complex 98.5 2.5E-06 5.4E-11 68.5 10.6 116 38-157 146-265 (529)
29 cd01393 recA_like RecA is a b 98.5 3.3E-06 7.1E-11 62.2 10.7 103 52-157 6-123 (226)
30 smart00382 AAA ATPases associa 98.4 1.3E-06 2.8E-11 58.3 7.6 38 66-105 3-40 (148)
31 cd01123 Rad51_DMC1_radA Rad51_ 98.4 3E-06 6.4E-11 62.8 9.8 104 53-157 7-124 (235)
32 PRK12402 replication factor C 98.4 1.6E-06 3.5E-11 67.3 8.4 45 41-87 14-58 (337)
33 COG2256 MGS1 ATPase related to 98.4 9E-07 2E-11 69.8 6.8 51 41-95 23-76 (436)
34 TIGR02237 recomb_radB DNA repa 98.4 2.4E-06 5.3E-11 62.2 8.2 96 58-157 5-106 (209)
35 PF13173 AAA_14: AAA domain 98.4 5.9E-07 1.3E-11 60.7 4.3 39 65-106 2-40 (128)
36 TIGR03420 DnaA_homol_Hda DnaA 98.3 1.7E-06 3.7E-11 63.6 7.0 54 47-104 22-75 (226)
37 TIGR01242 26Sp45 26S proteasom 98.3 1.9E-06 4E-11 68.2 7.3 52 42-95 122-184 (364)
38 TIGR02639 ClpA ATP-dependent C 98.3 2.7E-06 5.9E-11 72.9 8.6 44 42-87 182-225 (731)
39 CHL00095 clpC Clp protease ATP 98.3 3.5E-06 7.5E-11 73.1 9.1 44 42-87 179-222 (821)
40 PRK03992 proteasome-activating 98.3 3.8E-06 8.3E-11 67.1 8.5 46 42-87 131-187 (389)
41 PRK13341 recombination factor 98.3 1.7E-06 3.7E-11 73.8 6.8 51 41-95 27-80 (725)
42 PF00004 AAA: ATPase family as 98.3 1.1E-06 2.4E-11 58.8 4.6 20 68-87 1-20 (132)
43 PRK06893 DNA replication initi 98.3 3.9E-06 8.6E-11 62.3 7.8 38 65-104 39-76 (229)
44 PF08423 Rad51: Rad51; InterP 98.3 3.4E-06 7.3E-11 63.7 7.4 105 52-157 25-142 (256)
45 PF04665 Pox_A32: Poxvirus A32 98.3 1.4E-06 3E-11 65.0 5.1 35 67-103 15-49 (241)
46 PHA02544 44 clamp loader, smal 98.3 5.3E-06 1.2E-10 64.1 8.5 47 40-87 19-65 (316)
47 PRK07952 DNA replication prote 98.3 4.4E-05 9.5E-10 57.3 13.0 51 50-102 84-134 (244)
48 PRK12377 putative replication 98.2 3.1E-05 6.6E-10 58.2 11.6 37 65-103 101-137 (248)
49 KOG2028 ATPase related to the 98.2 3.4E-06 7.3E-11 66.2 6.4 90 43-157 139-231 (554)
50 PLN03025 replication factor C 98.2 8E-06 1.7E-10 63.5 8.6 45 41-87 12-56 (319)
51 cd01394 radB RadB. The archaea 98.2 1.2E-05 2.7E-10 58.9 9.1 100 52-157 6-112 (218)
52 PRK08116 hypothetical protein; 98.2 1.7E-05 3.8E-10 60.2 10.0 35 66-102 115-149 (268)
53 TIGR03689 pup_AAA proteasome A 98.2 6.2E-06 1.3E-10 67.7 7.9 48 41-88 181-239 (512)
54 PRK10865 protein disaggregatio 98.2 6.3E-06 1.4E-10 71.8 8.1 44 42-87 178-221 (857)
55 TIGR03345 VI_ClpV1 type VI sec 98.2 6.3E-06 1.4E-10 71.7 8.0 45 41-87 186-230 (852)
56 TIGR02012 tigrfam_recA protein 98.2 9E-06 2E-10 63.2 7.7 99 52-157 41-142 (321)
57 PRK14963 DNA polymerase III su 98.2 1.4E-06 3.1E-11 71.6 3.4 47 41-88 13-59 (504)
58 PRK00440 rfc replication facto 98.2 2.1E-05 4.5E-10 60.6 9.7 45 41-87 16-60 (319)
59 cd00983 recA RecA is a bacter 98.2 1.1E-05 2.3E-10 62.9 7.9 99 52-157 41-142 (325)
60 PRK14956 DNA polymerase III su 98.1 7.8E-06 1.7E-10 66.5 7.2 47 40-87 16-62 (484)
61 TIGR02238 recomb_DMC1 meiotic 98.1 1.9E-05 4.2E-10 61.3 9.1 105 52-157 83-200 (313)
62 PRK08084 DNA replication initi 98.1 1.1E-05 2.4E-10 60.1 7.5 59 43-105 24-83 (235)
63 PRK14957 DNA polymerase III su 98.1 1.8E-05 3.9E-10 65.6 9.3 46 41-87 15-60 (546)
64 PRK08118 topology modulation p 98.1 9.4E-06 2E-10 57.4 6.7 35 67-101 3-38 (167)
65 PRK12608 transcription termina 98.1 1.8E-05 3.8E-10 62.6 8.7 103 52-157 121-229 (380)
66 PRK14962 DNA polymerase III su 98.1 2.9E-05 6.2E-10 63.5 9.9 46 41-87 13-58 (472)
67 PLN03187 meiotic recombination 98.1 1.3E-05 2.9E-10 62.9 7.6 105 52-157 113-230 (344)
68 PRK08727 hypothetical protein; 98.1 2.3E-05 5.1E-10 58.3 8.5 60 42-105 19-79 (233)
69 PRK09354 recA recombinase A; P 98.1 9.3E-06 2E-10 63.7 6.6 99 52-157 46-147 (349)
70 TIGR03346 chaperone_ClpB ATP-d 98.1 1.7E-05 3.6E-10 69.2 8.7 44 42-87 173-216 (852)
71 PRK14088 dnaA chromosomal repl 98.1 2.8E-05 6.1E-10 63.1 9.6 36 65-102 130-167 (440)
72 PTZ00454 26S protease regulato 98.1 2.9E-05 6.3E-10 62.2 9.4 46 42-87 145-201 (398)
73 PRK14961 DNA polymerase III su 98.1 4.4E-05 9.6E-10 60.4 10.4 46 41-87 15-60 (363)
74 TIGR00362 DnaA chromosomal rep 98.1 3E-05 6.5E-10 62.2 9.4 49 44-94 113-163 (405)
75 PRK14949 DNA polymerase III su 98.1 2.6E-05 5.5E-10 67.6 9.3 47 41-88 15-61 (944)
76 PRK07003 DNA polymerase III su 98.1 3.3E-05 7.2E-10 65.9 9.7 46 41-87 15-60 (830)
77 cd01133 F1-ATPase_beta F1 ATP 98.1 2.2E-05 4.8E-10 59.7 7.9 92 64-157 68-172 (274)
78 PF00308 Bac_DnaA: Bacterial d 98.1 4.9E-05 1.1E-09 56.1 9.5 41 51-93 20-60 (219)
79 PRK07261 topology modulation p 98.1 2.5E-05 5.3E-10 55.5 7.5 55 67-121 2-57 (171)
80 TIGR02236 recomb_radA DNA repa 98.1 4.1E-05 9E-10 59.2 9.4 105 52-157 82-201 (310)
81 PF05673 DUF815: Protein of un 98.1 1.9E-05 4.1E-10 58.9 7.1 50 38-87 23-74 (249)
82 PRK05541 adenylylsulfate kinas 98.0 1.2E-05 2.7E-10 57.0 5.9 36 64-101 6-41 (176)
83 PRK12323 DNA polymerase III su 98.0 3.5E-05 7.6E-10 64.8 9.3 46 41-87 15-60 (700)
84 PRK00149 dnaA chromosomal repl 98.0 3.6E-05 7.7E-10 62.6 9.2 50 44-95 125-176 (450)
85 TIGR02239 recomb_RAD51 DNA rep 98.0 2.9E-05 6.3E-10 60.4 8.2 106 51-157 82-200 (316)
86 TIGR02881 spore_V_K stage V sp 98.0 1.5E-05 3.2E-10 60.3 6.4 45 43-87 7-64 (261)
87 PRK14960 DNA polymerase III su 98.0 4.5E-05 9.8E-10 64.3 9.4 47 40-87 13-59 (702)
88 smart00763 AAA_PrkA PrkA AAA d 98.0 6.8E-06 1.5E-10 64.6 4.3 46 43-88 52-101 (361)
89 PRK08181 transposase; Validate 98.0 4.7E-05 1E-09 57.9 8.7 35 66-102 107-141 (269)
90 TIGR01241 FtsH_fam ATP-depende 98.0 3.4E-05 7.3E-10 63.5 8.4 48 40-87 53-110 (495)
91 PTZ00361 26 proteosome regulat 98.0 1.4E-05 3.1E-10 64.6 6.1 52 42-95 183-245 (438)
92 PRK06696 uridine kinase; Valid 98.0 1.6E-05 3.5E-10 58.7 5.9 42 46-87 2-44 (223)
93 PLN03186 DNA repair protein RA 98.0 7.5E-05 1.6E-09 58.7 9.8 106 51-157 109-227 (342)
94 KOG0733 Nuclear AAA ATPase (VC 98.0 2.5E-05 5.4E-10 64.8 7.3 94 40-157 188-291 (802)
95 PRK14969 DNA polymerase III su 98.0 7.8E-05 1.7E-09 61.8 10.4 46 41-87 15-60 (527)
96 PRK14087 dnaA chromosomal repl 98.0 3.1E-05 6.8E-10 63.0 7.9 44 44-87 118-163 (450)
97 PRK05564 DNA polymerase III su 98.0 9.8E-05 2.1E-09 57.2 10.3 78 42-121 4-86 (313)
98 PRK08939 primosomal protein Dn 98.0 4.5E-05 9.7E-10 59.1 8.3 56 46-103 135-192 (306)
99 COG2909 MalT ATP-dependent tra 98.0 0.00015 3.2E-09 62.2 11.9 108 41-156 18-137 (894)
100 COG0468 RecA RecA/RadA recombi 98.0 8.7E-05 1.9E-09 56.6 9.6 101 53-157 48-150 (279)
101 PRK08691 DNA polymerase III su 98.0 6.1E-05 1.3E-09 63.8 9.5 46 41-87 15-60 (709)
102 PRK04301 radA DNA repair and r 98.0 6E-05 1.3E-09 58.6 9.0 105 52-157 89-207 (317)
103 PRK06645 DNA polymerase III su 98.0 1.5E-05 3.2E-10 65.6 5.7 48 40-88 19-66 (507)
104 cd01120 RecA-like_NTPases RecA 98.0 2.4E-05 5.1E-10 54.0 6.0 40 67-108 1-40 (165)
105 PRK14970 DNA polymerase III su 98.0 8.3E-05 1.8E-09 58.8 9.8 46 41-87 16-61 (367)
106 PRK14950 DNA polymerase III su 98.0 2.9E-05 6.2E-10 65.1 7.5 46 41-87 15-60 (585)
107 PRK14958 DNA polymerase III su 98.0 8.1E-05 1.8E-09 61.5 9.9 46 41-87 15-60 (509)
108 PRK11034 clpA ATP-dependent Cl 98.0 3.6E-05 7.7E-10 66.2 8.1 44 42-87 186-229 (758)
109 CHL00181 cbbX CbbX; Provisiona 98.0 8.7E-05 1.9E-09 57.0 9.5 45 43-87 24-81 (287)
110 COG2255 RuvB Holliday junction 98.0 1.2E-05 2.5E-10 61.1 4.4 53 41-95 25-80 (332)
111 TIGR00602 rad24 checkpoint pro 98.0 1.8E-05 3.8E-10 66.7 6.0 48 40-87 82-132 (637)
112 PRK14964 DNA polymerase III su 97.9 9.5E-05 2.1E-09 60.6 10.0 47 40-87 11-57 (491)
113 PF13207 AAA_17: AAA domain; P 97.9 7.8E-06 1.7E-10 54.2 3.1 21 67-87 1-21 (121)
114 TIGR00763 lon ATP-dependent pr 97.9 4.1E-05 8.8E-10 66.2 7.9 52 42-95 320-375 (775)
115 PRK14951 DNA polymerase III su 97.9 8.6E-05 1.9E-09 62.5 9.5 47 40-87 14-60 (618)
116 TIGR02397 dnaX_nterm DNA polym 97.9 1.6E-05 3.5E-10 62.3 4.9 47 40-87 12-58 (355)
117 CHL00176 ftsH cell division pr 97.9 4.4E-05 9.5E-10 64.5 7.6 47 41-87 182-238 (638)
118 PRK14955 DNA polymerase III su 97.9 0.0001 2.3E-09 59.0 9.3 47 40-87 14-60 (397)
119 PTZ00035 Rad51 protein; Provis 97.9 0.00025 5.3E-09 55.7 11.1 106 51-157 104-222 (337)
120 PRK06067 flagellar accessory p 97.9 0.00013 2.8E-09 54.2 9.2 101 52-157 12-129 (234)
121 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00017 3.7E-09 53.7 9.8 61 52-116 8-68 (237)
122 PRK09183 transposase/IS protei 97.9 0.00025 5.4E-09 53.7 10.8 23 65-87 102-124 (259)
123 PRK07667 uridine kinase; Provi 97.9 3.6E-05 7.7E-10 55.7 5.8 37 51-87 3-39 (193)
124 PRK06526 transposase; Provisio 97.9 0.00014 3E-09 54.9 9.2 23 65-87 98-120 (254)
125 PRK12422 chromosomal replicati 97.9 0.00016 3.6E-09 58.7 10.2 36 65-102 141-176 (445)
126 TIGR01243 CDC48 AAA family ATP 97.9 3.3E-05 7.1E-10 66.4 6.4 46 42-87 178-234 (733)
127 TIGR02880 cbbX_cfxQ probable R 97.9 0.00014 3E-09 55.8 9.2 22 66-87 59-80 (284)
128 PRK05896 DNA polymerase III su 97.9 5.6E-05 1.2E-09 63.2 7.5 46 41-87 15-60 (605)
129 cd01121 Sms Sms (bacterial rad 97.9 0.00012 2.6E-09 58.1 9.2 99 51-157 68-167 (372)
130 PF01695 IstB_IS21: IstB-like 97.9 3.1E-05 6.7E-10 55.4 5.0 36 65-102 47-82 (178)
131 PRK09111 DNA polymerase III su 97.8 3.3E-05 7.2E-10 64.8 5.9 48 40-88 22-69 (598)
132 PRK09519 recA DNA recombinatio 97.8 9.9E-05 2.2E-09 63.4 8.6 99 52-157 46-147 (790)
133 PRK08233 hypothetical protein; 97.8 0.00012 2.5E-09 51.9 7.7 24 65-88 3-26 (182)
134 TIGR02639 ClpA ATP-dependent C 97.8 7.5E-05 1.6E-09 64.2 7.6 46 42-87 454-506 (731)
135 KOG0744 AAA+-type ATPase [Post 97.8 3.9E-05 8.5E-10 59.4 5.3 79 65-157 177-259 (423)
136 PF00448 SRP54: SRP54-type pro 97.8 0.00014 3E-09 52.9 7.8 54 66-121 2-56 (196)
137 PRK07940 DNA polymerase III su 97.8 0.0002 4.3E-09 57.3 9.3 47 41-87 4-58 (394)
138 PRK07994 DNA polymerase III su 97.8 0.00017 3.6E-09 61.0 9.2 47 40-87 14-60 (647)
139 PF00485 PRK: Phosphoribulokin 97.8 0.00025 5.3E-09 51.2 9.0 81 67-150 1-85 (194)
140 TIGR03878 thermo_KaiC_2 KaiC d 97.8 0.00014 3.1E-09 55.0 7.9 43 61-105 32-74 (259)
141 cd03115 SRP The signal recogni 97.8 0.00013 2.9E-09 51.5 7.2 21 67-87 2-22 (173)
142 PRK14952 DNA polymerase III su 97.8 0.00029 6.3E-09 59.0 10.1 46 41-87 12-57 (584)
143 TIGR00064 ftsY signal recognit 97.8 0.00036 7.8E-09 53.2 9.8 25 63-87 70-94 (272)
144 COG1484 DnaC DNA replication p 97.8 0.00017 3.7E-09 54.5 7.9 42 46-88 87-128 (254)
145 PF00154 RecA: recA bacterial 97.7 0.00011 2.3E-09 57.2 6.7 99 52-157 39-140 (322)
146 TIGR03499 FlhF flagellar biosy 97.7 0.00022 4.8E-09 54.6 8.4 87 64-156 193-280 (282)
147 PRK06921 hypothetical protein; 97.7 0.0002 4.4E-09 54.4 8.1 37 65-103 117-154 (266)
148 PRK09270 nucleoside triphospha 97.7 0.00037 8.1E-09 51.6 9.4 25 63-87 31-55 (229)
149 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.00058 1.2E-08 50.4 10.4 101 52-157 7-130 (229)
150 PRK14954 DNA polymerase III su 97.7 0.00027 5.8E-09 59.7 9.4 47 40-87 14-60 (620)
151 PRK11823 DNA repair protein Ra 97.7 0.00041 8.9E-09 56.5 10.2 99 51-157 66-165 (446)
152 KOG0735 AAA+-type ATPase [Post 97.7 0.0003 6.4E-09 59.6 9.3 72 64-157 430-503 (952)
153 COG0466 Lon ATP-dependent Lon 97.7 4.3E-05 9.3E-10 64.3 4.4 52 42-95 323-378 (782)
154 COG4608 AppF ABC-type oligopep 97.7 0.00026 5.6E-09 53.5 8.2 90 64-156 38-135 (268)
155 PRK10787 DNA-binding ATP-depen 97.7 0.00023 5E-09 61.6 9.0 46 42-87 322-371 (784)
156 KOG0991 Replication factor C, 97.7 0.00016 3.5E-09 53.8 6.9 68 40-111 25-94 (333)
157 TIGR02655 circ_KaiC circadian 97.7 0.00029 6.2E-09 57.9 9.1 103 50-157 248-362 (484)
158 PRK08903 DnaA regulatory inact 97.7 9.9E-05 2.2E-09 54.5 5.9 45 42-87 18-64 (227)
159 TIGR01243 CDC48 AAA family ATP 97.7 0.00018 3.9E-09 62.0 8.1 47 41-87 452-509 (733)
160 TIGR00390 hslU ATP-dependent p 97.7 0.00019 4E-09 57.7 7.6 52 42-95 12-75 (441)
161 PLN00020 ribulose bisphosphate 97.7 0.00011 2.4E-09 58.1 6.2 30 63-94 146-175 (413)
162 COG1618 Predicted nucleotide k 97.7 3.7E-05 8E-10 53.8 3.1 23 65-87 5-27 (179)
163 PRK15455 PrkA family serine pr 97.7 5.7E-05 1.2E-09 62.8 4.7 46 42-87 76-125 (644)
164 PRK05201 hslU ATP-dependent pr 97.7 0.00016 3.4E-09 58.2 7.0 47 41-87 14-72 (443)
165 PRK04040 adenylate kinase; Pro 97.7 0.00014 3.1E-09 52.4 6.3 22 66-87 3-24 (188)
166 COG0572 Udk Uridine kinase [Nu 97.7 9.7E-05 2.1E-09 54.2 5.4 28 64-93 7-34 (218)
167 PF14516 AAA_35: AAA-like doma 97.7 0.0012 2.6E-08 51.7 11.9 114 39-157 8-136 (331)
168 TIGR00416 sms DNA repair prote 97.7 0.00042 9.2E-09 56.5 9.6 102 48-157 77-179 (454)
169 PTZ00301 uridine kinase; Provi 97.7 0.00011 2.3E-09 54.0 5.6 23 65-87 3-25 (210)
170 PRK14086 dnaA chromosomal repl 97.7 0.00029 6.3E-09 59.1 8.7 27 65-93 314-340 (617)
171 PRK10867 signal recognition pa 97.7 0.0005 1.1E-08 55.7 9.8 24 64-87 99-122 (433)
172 cd02025 PanK Pantothenate kina 97.7 0.00032 7E-09 51.8 7.9 21 67-87 1-21 (220)
173 PRK00771 signal recognition pa 97.7 0.00068 1.5E-08 55.0 10.3 57 64-122 94-151 (437)
174 COG0467 RAD55 RecA-superfamily 97.6 0.00019 4.1E-09 54.2 6.8 58 56-117 14-71 (260)
175 PRK05642 DNA replication initi 97.6 0.00037 8E-09 51.9 8.1 38 65-104 45-82 (234)
176 TIGR00959 ffh signal recogniti 97.6 0.00056 1.2E-08 55.3 9.6 23 65-87 99-121 (428)
177 CHL00095 clpC Clp protease ATP 97.6 0.00015 3.3E-09 63.1 6.6 46 42-87 509-561 (821)
178 TIGR02903 spore_lon_C ATP-depe 97.6 9.9E-05 2.1E-09 62.3 5.3 48 40-89 152-199 (615)
179 PRK14953 DNA polymerase III su 97.6 0.00083 1.8E-08 55.3 10.4 46 41-87 15-60 (486)
180 PRK06835 DNA replication prote 97.6 0.00027 5.8E-09 55.3 7.2 36 66-103 184-219 (329)
181 KOG1969 DNA replication checkp 97.6 0.00026 5.6E-09 60.0 7.4 55 63-122 324-378 (877)
182 PF13238 AAA_18: AAA domain; P 97.6 5.4E-05 1.2E-09 50.4 2.8 20 68-87 1-20 (129)
183 PRK08972 fliI flagellum-specif 97.6 0.00034 7.3E-09 56.6 7.8 90 64-157 161-261 (444)
184 PRK04296 thymidine kinase; Pro 97.6 0.00011 2.4E-09 53.0 4.6 22 66-87 3-24 (190)
185 PRK06002 fliI flagellum-specif 97.6 0.00054 1.2E-08 55.6 8.8 91 64-157 164-263 (450)
186 PRK04328 hypothetical protein; 97.6 0.00065 1.4E-08 51.1 8.8 52 52-105 10-61 (249)
187 PRK08927 fliI flagellum-specif 97.6 0.00042 9.1E-09 56.1 8.1 90 64-157 157-257 (442)
188 PRK13531 regulatory ATPase Rav 97.6 0.0001 2.2E-09 60.1 4.7 42 42-87 20-61 (498)
189 PRK10865 protein disaggregatio 97.6 0.00054 1.2E-08 60.0 9.3 46 42-87 568-620 (857)
190 TIGR00764 lon_rel lon-related 97.6 0.00032 7E-09 59.1 7.5 75 41-122 17-92 (608)
191 PRK05439 pantothenate kinase; 97.6 0.00097 2.1E-08 51.8 9.6 25 63-87 84-108 (311)
192 COG0470 HolB ATPase involved i 97.6 0.00095 2.1E-08 51.4 9.7 45 43-87 2-46 (325)
193 COG2607 Predicted ATPase (AAA+ 97.5 0.0013 2.8E-08 49.2 9.6 54 40-95 58-113 (287)
194 PRK05973 replicative DNA helic 97.5 0.00097 2.1E-08 49.8 9.2 53 60-116 59-111 (237)
195 PF00158 Sigma54_activat: Sigm 97.5 0.00053 1.2E-08 48.6 7.4 44 44-87 1-44 (168)
196 PRK07764 DNA polymerase III su 97.5 0.00082 1.8E-08 58.5 9.9 47 41-88 14-60 (824)
197 PF06745 KaiC: KaiC; InterPro 97.5 0.00015 3.4E-09 53.4 4.8 100 54-157 8-124 (226)
198 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00078 1.7E-08 59.0 9.7 46 42-87 565-617 (852)
199 cd00984 DnaB_C DnaB helicase C 97.5 0.0016 3.4E-08 48.4 10.2 54 61-117 9-62 (242)
200 PRK11034 clpA ATP-dependent Cl 97.5 0.00021 4.5E-09 61.6 6.0 46 42-87 458-510 (758)
201 PRK14974 cell division protein 97.5 0.00076 1.6E-08 52.9 8.7 24 64-87 139-162 (336)
202 PRK14722 flhF flagellar biosyn 97.5 0.00054 1.2E-08 54.4 7.9 24 64-87 136-159 (374)
203 CHL00195 ycf46 Ycf46; Provisio 97.5 0.00034 7.5E-09 57.5 7.0 47 41-87 227-281 (489)
204 COG1222 RPT1 ATP-dependent 26S 97.5 0.00018 3.9E-09 56.3 5.0 47 42-88 151-208 (406)
205 PRK14965 DNA polymerase III su 97.5 0.0011 2.4E-08 55.6 10.1 47 40-87 14-60 (576)
206 TIGR00678 holB DNA polymerase 97.5 0.0014 3.1E-08 46.9 9.4 34 53-87 3-36 (188)
207 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00027 5.9E-09 61.7 6.5 46 42-87 566-618 (852)
208 PRK14959 DNA polymerase III su 97.5 0.001 2.2E-08 56.1 9.6 47 41-88 15-61 (624)
209 PRK06647 DNA polymerase III su 97.5 0.0013 2.7E-08 55.1 10.1 47 41-88 15-61 (563)
210 PF12775 AAA_7: P-loop contain 97.5 0.00024 5.1E-09 54.2 5.4 33 52-87 23-55 (272)
211 KOG0736 Peroxisome assembly fa 97.5 0.0017 3.7E-08 55.5 10.8 96 38-157 668-773 (953)
212 PF13671 AAA_33: AAA domain; P 97.5 0.00011 2.5E-09 49.9 3.3 21 67-87 1-21 (143)
213 PRK05480 uridine/cytidine kina 97.5 0.00011 2.3E-09 53.6 3.3 24 64-87 5-28 (209)
214 COG1419 FlhF Flagellar GTP-bin 97.5 0.0013 2.8E-08 52.5 9.5 23 65-87 203-226 (407)
215 KOG2004 Mitochondrial ATP-depe 97.5 0.0003 6.5E-09 59.5 6.1 52 42-95 411-466 (906)
216 PRK12597 F0F1 ATP synthase sub 97.5 0.00045 9.8E-09 56.2 7.0 93 64-157 142-246 (461)
217 PF07728 AAA_5: AAA domain (dy 97.5 0.00031 6.8E-09 47.7 5.3 43 68-115 2-44 (139)
218 PRK15453 phosphoribulokinase; 97.5 0.0014 3E-08 50.2 9.1 24 64-87 4-27 (290)
219 TIGR03575 selen_PSTK_euk L-ser 97.5 0.00057 1.2E-08 53.7 7.2 20 68-87 2-21 (340)
220 cd02028 UMPK_like Uridine mono 97.5 0.00031 6.7E-09 50.2 5.4 21 67-87 1-21 (179)
221 TIGR02902 spore_lonB ATP-depen 97.4 0.00016 3.5E-09 60.0 4.4 45 41-87 64-108 (531)
222 KOG1514 Origin recognition com 97.4 0.0014 3E-08 55.4 9.7 111 40-157 394-517 (767)
223 PRK08149 ATP synthase SpaL; Va 97.4 0.00077 1.7E-08 54.4 8.0 90 64-157 150-250 (428)
224 PRK00889 adenylylsulfate kinas 97.4 0.00053 1.1E-08 48.5 6.4 24 64-87 3-26 (175)
225 PRK06762 hypothetical protein; 97.4 0.00012 2.6E-09 51.3 3.1 23 65-87 2-24 (166)
226 PRK05563 DNA polymerase III su 97.4 0.002 4.4E-08 53.9 10.7 47 40-87 14-60 (559)
227 TIGR00150 HI0065_YjeE ATPase, 97.4 0.0003 6.6E-09 47.9 4.8 42 48-89 5-46 (133)
228 cd01135 V_A-ATPase_B V/A-type 97.4 0.00073 1.6E-08 51.5 7.3 94 64-157 68-175 (276)
229 COG0593 DnaA ATPase involved i 97.4 0.00099 2.1E-08 53.4 8.3 38 63-102 111-148 (408)
230 TIGR02640 gas_vesic_GvpN gas v 97.4 0.00066 1.4E-08 51.4 7.1 54 51-113 11-64 (262)
231 KOG0739 AAA+-type ATPase [Post 97.4 0.001 2.2E-08 51.3 7.9 47 41-87 132-188 (439)
232 COG1066 Sms Predicted ATP-depe 97.4 0.00093 2E-08 53.4 7.9 99 50-157 78-177 (456)
233 TIGR00235 udk uridine kinase. 97.4 0.00014 3.1E-09 53.0 3.3 24 64-87 5-28 (207)
234 TIGR01817 nifA Nif-specific re 97.4 0.0012 2.7E-08 54.8 9.2 51 38-88 192-242 (534)
235 PRK08451 DNA polymerase III su 97.4 0.0021 4.6E-08 53.4 10.3 47 40-87 12-58 (535)
236 COG1223 Predicted ATPase (AAA+ 97.4 0.00067 1.4E-08 51.4 6.7 54 40-95 119-179 (368)
237 PRK07594 type III secretion sy 97.4 0.00089 1.9E-08 54.2 7.9 90 64-157 154-254 (433)
238 PRK06936 type III secretion sy 97.4 0.00092 2E-08 54.1 8.0 90 64-157 161-261 (439)
239 PF07726 AAA_3: ATPase family 97.4 0.00016 3.4E-09 48.9 3.0 27 68-96 2-28 (131)
240 PRK08533 flagellar accessory p 97.4 0.0014 3E-08 48.7 8.5 50 63-116 22-71 (230)
241 PRK03839 putative kinase; Prov 97.4 0.00013 2.7E-09 52.0 2.8 22 67-88 2-23 (180)
242 COG0542 clpA ATP-binding subun 97.4 0.00027 5.9E-09 60.6 5.1 45 41-87 169-213 (786)
243 PF01583 APS_kinase: Adenylyls 97.4 0.00023 5.1E-09 49.8 4.0 88 65-154 2-105 (156)
244 PRK14948 DNA polymerase III su 97.4 0.002 4.3E-08 54.6 10.2 47 41-88 15-61 (620)
245 PHA02244 ATPase-like protein 97.4 0.00036 7.9E-09 55.2 5.4 43 41-87 95-141 (383)
246 PRK13765 ATP-dependent proteas 97.4 0.00053 1.1E-08 58.0 6.7 76 40-122 29-105 (637)
247 COG0714 MoxR-like ATPases [Gen 97.4 0.0006 1.3E-08 53.3 6.6 69 42-119 24-92 (329)
248 PRK11889 flhF flagellar biosyn 97.4 0.0028 6E-08 50.9 10.3 24 64-87 240-263 (436)
249 TIGR00554 panK_bact pantothena 97.4 0.0016 3.6E-08 50.0 8.8 25 63-87 60-84 (290)
250 PRK06547 hypothetical protein; 97.4 0.00033 7.1E-09 49.9 4.7 26 63-88 13-38 (172)
251 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00017 3.6E-09 51.4 3.2 24 64-87 2-25 (188)
252 TIGR03498 FliI_clade3 flagella 97.4 0.00077 1.7E-08 54.3 7.2 90 64-157 139-239 (418)
253 PF08433 KTI12: Chromatin asso 97.4 0.00063 1.4E-08 51.8 6.4 22 66-87 2-23 (270)
254 PRK09099 type III secretion sy 97.4 0.0012 2.5E-08 53.7 8.2 90 64-157 162-262 (441)
255 PRK09280 F0F1 ATP synthase sub 97.4 0.0012 2.7E-08 53.7 8.3 93 64-157 143-247 (463)
256 PRK12727 flagellar biosynthesi 97.4 0.0015 3.3E-08 54.0 8.9 24 64-87 349-372 (559)
257 TIGR01425 SRP54_euk signal rec 97.3 0.0022 4.7E-08 51.9 9.5 24 64-87 99-122 (429)
258 TIGR03305 alt_F1F0_F1_bet alte 97.3 0.00079 1.7E-08 54.6 7.0 93 64-157 137-241 (449)
259 cd01131 PilT Pilus retraction 97.3 0.00029 6.4E-09 51.1 4.2 22 66-87 2-23 (198)
260 PF00006 ATP-synt_ab: ATP synt 97.3 0.00043 9.2E-09 51.0 5.0 50 65-118 15-65 (215)
261 cd02024 NRK1 Nicotinamide ribo 97.3 0.00047 1E-08 49.7 5.1 22 67-88 1-22 (187)
262 KOG0733 Nuclear AAA ATPase (VC 97.3 0.00019 4E-09 59.8 3.3 52 42-95 511-573 (802)
263 PRK00131 aroK shikimate kinase 97.3 0.00021 4.5E-09 50.2 3.1 23 65-87 4-26 (175)
264 PRK05703 flhF flagellar biosyn 97.3 0.0018 3.9E-08 52.4 8.8 23 65-87 221-243 (424)
265 PRK12724 flagellar biosynthesi 97.3 0.00094 2E-08 53.8 7.1 23 65-87 223-245 (432)
266 COG1703 ArgK Putative periplas 97.3 0.00027 5.9E-09 54.1 3.8 64 51-114 37-100 (323)
267 PRK12723 flagellar biosynthesi 97.3 0.0043 9.3E-08 49.7 10.8 24 64-87 173-196 (388)
268 cd02019 NK Nucleoside/nucleoti 97.3 0.00018 4E-09 43.3 2.4 21 67-87 1-21 (69)
269 PRK10463 hydrogenase nickel in 97.3 0.0024 5.1E-08 49.1 8.9 31 63-95 102-132 (290)
270 PRK14738 gmk guanylate kinase; 97.3 0.00025 5.4E-09 51.8 3.5 31 57-87 5-35 (206)
271 PF03308 ArgK: ArgK protein; 97.3 0.00026 5.7E-09 53.3 3.6 38 50-87 14-51 (266)
272 COG0542 clpA ATP-binding subun 97.3 0.00078 1.7E-08 57.8 6.7 46 42-87 491-543 (786)
273 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00064 1.4E-08 50.9 5.7 21 67-87 1-21 (249)
274 PF01078 Mg_chelatase: Magnesi 97.3 0.00063 1.4E-08 49.7 5.4 43 41-87 2-44 (206)
275 PRK14971 DNA polymerase III su 97.3 0.0027 5.8E-08 53.8 9.9 46 41-87 16-61 (614)
276 PRK06620 hypothetical protein; 97.3 0.00073 1.6E-08 49.7 5.8 49 40-88 15-67 (214)
277 cd02029 PRK_like Phosphoribulo 97.3 0.0018 3.8E-08 49.3 7.9 21 67-87 1-21 (277)
278 PRK09302 circadian clock prote 97.3 0.0024 5.1E-08 52.8 9.4 102 51-157 259-372 (509)
279 COG3899 Predicted ATPase [Gene 97.3 0.0011 2.4E-08 58.0 7.7 50 43-94 1-51 (849)
280 PRK06217 hypothetical protein; 97.3 0.0007 1.5E-08 48.4 5.5 22 67-88 3-24 (183)
281 PF13481 AAA_25: AAA domain; P 97.3 0.00053 1.2E-08 49.1 4.8 91 65-157 32-150 (193)
282 PRK05922 type III secretion sy 97.3 0.0023 5E-08 51.8 8.8 89 65-157 157-256 (434)
283 PRK08472 fliI flagellum-specif 97.3 0.0018 4E-08 52.4 8.2 90 64-157 156-255 (434)
284 COG0464 SpoVK ATPases of the A 97.3 0.00055 1.2E-08 56.3 5.3 53 41-95 241-304 (494)
285 COG0563 Adk Adenylate kinase a 97.3 0.00066 1.4E-08 48.6 5.1 22 67-88 2-23 (178)
286 KOG0729 26S proteasome regulat 97.2 0.0041 8.9E-08 47.4 9.4 46 42-87 177-233 (435)
287 KOG0730 AAA+-type ATPase [Post 97.2 0.0011 2.4E-08 55.6 6.9 55 39-95 431-496 (693)
288 TIGR00041 DTMP_kinase thymidyl 97.2 0.0014 3E-08 47.1 6.7 22 66-87 4-25 (195)
289 PRK00625 shikimate kinase; Pro 97.2 0.00024 5.1E-09 50.6 2.7 21 67-87 2-22 (173)
290 COG3903 Predicted ATPase [Gene 97.2 0.0003 6.5E-09 55.9 3.4 83 64-156 13-96 (414)
291 TIGR01041 ATP_syn_B_arch ATP s 97.2 0.0012 2.7E-08 53.7 6.9 94 64-157 140-247 (458)
292 PRK12726 flagellar biosynthesi 97.2 0.0033 7.1E-08 50.2 9.1 24 64-87 205-228 (407)
293 cd01122 GP4d_helicase GP4d_hel 97.2 0.0052 1.1E-07 46.4 10.0 52 64-118 29-80 (271)
294 KOG3347 Predicted nucleotide k 97.2 0.00051 1.1E-08 47.6 3.9 23 65-87 7-29 (176)
295 cd02027 APSK Adenosine 5'-phos 97.2 0.0013 2.8E-08 45.5 6.1 21 67-87 1-21 (149)
296 KOG0734 AAA+-type ATPase conta 97.2 0.0032 6.9E-08 52.1 9.1 48 41-88 303-360 (752)
297 TIGR01040 V-ATPase_V1_B V-type 97.2 0.0017 3.7E-08 52.7 7.6 94 64-157 140-256 (466)
298 PRK13947 shikimate kinase; Pro 97.2 0.00026 5.7E-09 49.7 2.6 21 67-87 3-23 (171)
299 cd01132 F1_ATPase_alpha F1 ATP 97.2 0.0013 2.8E-08 50.1 6.4 90 64-157 68-170 (274)
300 COG1936 Predicted nucleotide k 97.2 0.00028 6.1E-09 49.9 2.7 20 67-86 2-21 (180)
301 PF00625 Guanylate_kin: Guanyl 97.2 0.0005 1.1E-08 49.1 4.1 36 65-102 2-37 (183)
302 cd02023 UMPK Uridine monophosp 97.2 0.00023 5E-09 51.4 2.3 21 67-87 1-21 (198)
303 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00024 5.1E-09 50.6 2.3 21 67-87 1-21 (183)
304 TIGR03496 FliI_clade1 flagella 97.2 0.0019 4E-08 52.1 7.6 90 64-157 136-236 (411)
305 cd03214 ABC_Iron-Siderophores_ 97.2 0.0036 7.7E-08 44.6 8.4 24 64-87 24-47 (180)
306 TIGR02322 phosphon_PhnN phosph 97.2 0.00032 7E-09 49.8 2.9 22 66-87 2-23 (179)
307 KOG0735 AAA+-type ATPase [Post 97.2 0.0037 7.9E-08 53.3 9.3 94 39-156 664-768 (952)
308 TIGR03497 FliI_clade2 flagella 97.2 0.0021 4.6E-08 51.8 7.7 90 64-157 136-236 (413)
309 KOG0989 Replication factor C, 97.2 0.00058 1.2E-08 52.6 4.3 58 40-99 34-91 (346)
310 PRK09112 DNA polymerase III su 97.2 0.00088 1.9E-08 52.9 5.5 51 36-87 17-67 (351)
311 PHA00729 NTP-binding motif con 97.2 0.00069 1.5E-08 50.2 4.6 23 65-87 17-39 (226)
312 cd01136 ATPase_flagellum-secre 97.2 0.0032 7E-08 49.2 8.4 90 64-157 68-168 (326)
313 PF00910 RNA_helicase: RNA hel 97.2 0.00018 3.9E-09 47.1 1.2 20 68-87 1-20 (107)
314 PRK05688 fliI flagellum-specif 97.1 0.0024 5.2E-08 51.9 7.8 90 64-157 167-267 (451)
315 PRK07721 fliI flagellum-specif 97.1 0.0026 5.6E-08 51.7 8.0 24 64-87 157-180 (438)
316 PF13086 AAA_11: AAA domain; P 97.1 0.00082 1.8E-08 49.0 4.8 64 49-118 5-75 (236)
317 PTZ00185 ATPase alpha subunit; 97.1 0.003 6.4E-08 52.2 8.3 94 64-157 188-298 (574)
318 TIGR03263 guanyl_kin guanylate 97.1 0.00041 8.8E-09 49.2 3.0 22 66-87 2-23 (180)
319 PRK12678 transcription termina 97.1 0.0012 2.5E-08 55.1 6.0 92 64-157 415-512 (672)
320 PRK00279 adk adenylate kinase; 97.1 0.0018 3.9E-08 47.5 6.5 21 67-87 2-22 (215)
321 cd00227 CPT Chloramphenicol (C 97.1 0.00044 9.5E-09 49.1 3.1 22 66-87 3-24 (175)
322 cd01672 TMPK Thymidine monopho 97.1 0.0013 2.7E-08 47.0 5.6 21 67-87 2-22 (200)
323 PF06068 TIP49: TIP49 C-termin 97.1 0.0037 7.9E-08 49.5 8.3 55 39-95 21-78 (398)
324 PRK05342 clpX ATP-dependent pr 97.1 0.0004 8.8E-09 55.9 3.2 46 42-87 71-130 (412)
325 cd01124 KaiC KaiC is a circadi 97.1 0.0012 2.5E-08 47.0 5.2 45 68-116 2-46 (187)
326 PRK06820 type III secretion sy 97.1 0.0056 1.2E-07 49.7 9.6 90 64-157 162-262 (440)
327 PRK07196 fliI flagellum-specif 97.1 0.0032 6.9E-08 51.0 8.2 90 64-157 154-254 (434)
328 PRK10536 hypothetical protein; 97.1 0.0013 2.8E-08 49.7 5.6 45 40-88 53-97 (262)
329 TIGR01026 fliI_yscN ATPase Fli 97.1 0.0025 5.5E-08 51.8 7.6 90 64-157 162-262 (440)
330 COG1120 FepC ABC-type cobalami 97.1 0.0036 7.9E-08 47.3 7.9 25 64-88 27-51 (258)
331 cd02021 GntK Gluconate kinase 97.1 0.00038 8.2E-09 47.9 2.5 22 67-88 1-22 (150)
332 PRK14721 flhF flagellar biosyn 97.1 0.0051 1.1E-07 49.7 9.2 24 64-87 190-213 (420)
333 PRK00300 gmk guanylate kinase; 97.1 0.0005 1.1E-08 49.8 3.2 24 65-88 5-28 (205)
334 COG3267 ExeA Type II secretory 97.1 0.011 2.3E-07 44.5 10.2 108 42-156 28-139 (269)
335 PRK05022 anaerobic nitric oxid 97.1 0.0039 8.5E-08 51.6 8.8 49 40-88 185-233 (509)
336 cd02020 CMPK Cytidine monophos 97.1 0.00038 8.3E-09 47.4 2.3 21 67-87 1-21 (147)
337 TIGR01039 atpD ATP synthase, F 97.1 0.0032 7E-08 51.3 7.8 93 64-157 142-246 (461)
338 PF03205 MobB: Molybdopterin g 97.1 0.00092 2E-08 45.9 4.1 38 66-105 1-39 (140)
339 cd00071 GMPK Guanosine monopho 97.1 0.00052 1.1E-08 46.9 2.8 21 67-87 1-21 (137)
340 TIGR02546 III_secr_ATP type II 97.1 0.0048 1E-07 49.9 8.8 90 64-157 144-244 (422)
341 PF14532 Sigma54_activ_2: Sigm 97.1 0.00032 7E-09 47.8 1.8 44 45-88 1-44 (138)
342 PRK10416 signal recognition pa 97.1 0.0049 1.1E-07 48.1 8.5 24 64-87 113-136 (318)
343 PRK05800 cobU adenosylcobinami 97.1 0.0043 9.2E-08 44.0 7.6 49 67-121 3-51 (170)
344 PTZ00088 adenylate kinase 1; P 97.0 0.0011 2.4E-08 49.3 4.7 21 67-87 8-28 (229)
345 COG2019 AdkA Archaeal adenylat 97.0 0.0025 5.4E-08 45.0 6.0 23 65-87 4-26 (189)
346 PRK03846 adenylylsulfate kinas 97.0 0.00066 1.4E-08 49.2 3.3 25 63-87 22-46 (198)
347 PRK13949 shikimate kinase; Pro 97.0 0.00053 1.1E-08 48.6 2.7 21 67-87 3-23 (169)
348 PRK06793 fliI flagellum-specif 97.0 0.0051 1.1E-07 49.8 8.6 90 64-157 155-255 (432)
349 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0047 1E-07 44.1 7.6 23 65-87 25-47 (177)
350 cd00544 CobU Adenosylcobinamid 97.0 0.003 6.6E-08 44.8 6.5 46 68-119 2-47 (169)
351 PRK10751 molybdopterin-guanine 97.0 0.00084 1.8E-08 47.8 3.6 24 64-87 5-28 (173)
352 PRK14530 adenylate kinase; Pro 97.0 0.00055 1.2E-08 50.2 2.8 22 66-87 4-25 (215)
353 PRK09087 hypothetical protein; 97.0 0.0018 3.8E-08 48.1 5.4 24 65-88 44-67 (226)
354 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0043 9.2E-08 42.7 7.0 25 64-88 25-49 (144)
355 cd00464 SK Shikimate kinase (S 97.0 0.00056 1.2E-08 47.0 2.6 20 68-87 2-21 (154)
356 PRK10078 ribose 1,5-bisphospho 97.0 0.00066 1.4E-08 48.6 3.1 23 66-88 3-25 (186)
357 PF03266 NTPase_1: NTPase; In 97.0 0.00075 1.6E-08 47.8 3.3 20 68-87 2-21 (168)
358 PRK09435 membrane ATPase/prote 97.0 0.0027 5.8E-08 49.8 6.6 37 51-87 42-78 (332)
359 PRK06305 DNA polymerase III su 97.0 0.0013 2.8E-08 53.7 5.0 47 40-87 15-61 (451)
360 PRK05537 bifunctional sulfate 97.0 0.0015 3.2E-08 54.8 5.5 46 42-87 369-414 (568)
361 TIGR03600 phage_DnaB phage rep 97.0 0.0067 1.5E-07 49.0 9.1 71 46-120 176-246 (421)
362 TIGR00382 clpX endopeptidase C 97.0 0.00079 1.7E-08 54.2 3.6 47 41-87 76-138 (413)
363 TIGR02030 BchI-ChlI magnesium 97.0 0.0015 3.2E-08 51.4 5.0 45 41-87 3-47 (337)
364 CHL00060 atpB ATP synthase CF1 97.0 0.0035 7.5E-08 51.5 7.3 93 64-157 160-271 (494)
365 PLN02924 thymidylate kinase 97.0 0.0038 8.3E-08 46.1 7.0 25 64-88 15-39 (220)
366 PRK06761 hypothetical protein; 97.0 0.0016 3.5E-08 49.8 5.1 23 66-88 4-26 (282)
367 PRK07471 DNA polymerase III su 97.0 0.002 4.3E-08 51.2 5.7 49 38-87 15-63 (365)
368 PRK11608 pspF phage shock prot 97.0 0.0018 3.8E-08 50.7 5.3 46 42-87 6-51 (326)
369 PF03193 DUF258: Protein of un 97.0 0.0016 3.4E-08 45.9 4.5 36 49-89 24-59 (161)
370 PRK13948 shikimate kinase; Pro 96.9 0.0008 1.7E-08 48.3 3.1 24 64-87 9-32 (182)
371 COG1428 Deoxynucleoside kinase 96.9 0.0007 1.5E-08 49.4 2.8 24 65-88 4-27 (216)
372 PRK13407 bchI magnesium chelat 96.9 0.0012 2.6E-08 51.8 4.3 45 41-87 7-51 (334)
373 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.004 8.7E-08 45.8 7.0 59 53-115 4-62 (224)
374 PRK12339 2-phosphoglycerate ki 96.9 0.00084 1.8E-08 48.8 3.2 24 65-88 3-26 (197)
375 PRK15429 formate hydrogenlyase 96.9 0.0051 1.1E-07 52.7 8.3 48 41-88 375-422 (686)
376 COG0003 ArsA Predicted ATPase 96.9 0.0016 3.4E-08 50.9 4.8 23 65-87 2-24 (322)
377 TIGR03324 alt_F1F0_F1_al alter 96.9 0.005 1.1E-07 50.6 7.9 90 64-157 161-263 (497)
378 KOG0738 AAA+-type ATPase [Post 96.9 0.0012 2.7E-08 52.4 4.2 48 40-87 210-267 (491)
379 CHL00059 atpA ATP synthase CF1 96.9 0.0045 9.8E-08 50.7 7.5 90 64-157 140-242 (485)
380 PRK06995 flhF flagellar biosyn 96.9 0.0065 1.4E-07 49.9 8.5 24 64-87 255-278 (484)
381 COG0541 Ffh Signal recognition 96.9 0.014 3E-07 47.1 10.0 70 51-123 79-157 (451)
382 PLN02348 phosphoribulokinase 96.9 0.0081 1.8E-07 48.0 8.7 25 63-87 47-71 (395)
383 cd03223 ABCD_peroxisomal_ALDP 96.9 0.011 2.4E-07 41.6 8.6 25 64-88 26-50 (166)
384 PF08477 Miro: Miro-like prote 96.9 0.00083 1.8E-08 44.1 2.7 22 68-89 2-23 (119)
385 PRK13975 thymidylate kinase; P 96.9 0.00085 1.8E-08 48.2 3.0 22 66-87 3-24 (196)
386 PRK14723 flhF flagellar biosyn 96.9 0.0097 2.1E-07 51.4 9.7 23 65-87 185-207 (767)
387 cd01878 HflX HflX subfamily. 96.9 0.0032 7E-08 45.4 6.0 26 64-89 40-65 (204)
388 PRK05595 replicative DNA helic 96.9 0.012 2.7E-07 47.9 9.9 72 45-120 182-253 (444)
389 TIGR01313 therm_gnt_kin carboh 96.9 0.00062 1.4E-08 47.5 2.1 20 68-87 1-20 (163)
390 PRK10733 hflB ATP-dependent me 96.9 0.0037 8E-08 53.2 7.1 46 42-87 152-207 (644)
391 PRK13946 shikimate kinase; Pro 96.9 0.00089 1.9E-08 47.9 3.0 23 65-87 10-32 (184)
392 COG1224 TIP49 DNA helicase TIP 96.9 0.0025 5.3E-08 50.3 5.5 52 39-92 36-90 (450)
393 COG1124 DppF ABC-type dipeptid 96.9 0.0016 3.4E-08 48.6 4.2 24 64-87 32-55 (252)
394 cd01134 V_A-ATPase_A V/A-type 96.9 0.022 4.8E-07 45.0 10.8 50 64-117 156-206 (369)
395 CHL00081 chlI Mg-protoporyphyr 96.9 0.0014 3E-08 51.7 4.2 47 39-87 14-60 (350)
396 PRK13973 thymidylate kinase; P 96.9 0.0074 1.6E-07 44.2 7.8 23 66-88 4-26 (213)
397 PRK07133 DNA polymerase III su 96.9 0.0018 3.8E-08 55.5 5.0 46 41-87 17-62 (725)
398 PF02374 ArsA_ATPase: Anion-tr 96.9 0.0017 3.7E-08 50.3 4.5 22 66-87 2-23 (305)
399 PRK04196 V-type ATP synthase s 96.8 0.0057 1.2E-07 50.0 7.6 93 64-157 142-249 (460)
400 COG0125 Tmk Thymidylate kinase 96.8 0.0045 9.8E-08 45.4 6.3 49 65-115 3-51 (208)
401 PRK05057 aroK shikimate kinase 96.8 0.001 2.3E-08 47.2 3.0 22 66-87 5-26 (172)
402 PF13521 AAA_28: AAA domain; P 96.8 0.00083 1.8E-08 47.0 2.4 20 68-87 2-21 (163)
403 TIGR00750 lao LAO/AO transport 96.8 0.0034 7.3E-08 48.5 6.0 36 52-87 21-56 (300)
404 PRK07399 DNA polymerase III su 96.8 0.0088 1.9E-07 46.6 8.3 45 42-87 4-48 (314)
405 COG1157 FliI Flagellar biosynt 96.8 0.0079 1.7E-07 48.2 8.0 100 52-157 152-262 (441)
406 TIGR00962 atpA proton transloc 96.8 0.0056 1.2E-07 50.5 7.4 90 64-157 160-262 (501)
407 PLN02318 phosphoribulokinase/u 96.8 0.0019 4.1E-08 54.1 4.7 27 61-87 61-87 (656)
408 PRK07960 fliI flagellum-specif 96.8 0.0045 9.7E-08 50.3 6.7 24 64-87 174-197 (455)
409 PRK14737 gmk guanylate kinase; 96.8 0.0017 3.7E-08 46.7 3.9 25 64-88 3-27 (186)
410 PF07693 KAP_NTPase: KAP famil 96.8 0.0079 1.7E-07 46.5 7.9 72 48-121 2-81 (325)
411 TIGR02655 circ_KaiC circadian 96.8 0.0043 9.3E-08 51.1 6.7 61 53-116 9-69 (484)
412 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0028 6.1E-08 49.8 5.3 46 42-87 61-110 (358)
413 PRK04182 cytidylate kinase; Pr 96.8 0.0012 2.6E-08 46.6 3.0 21 67-87 2-22 (180)
414 PRK14527 adenylate kinase; Pro 96.8 0.0012 2.7E-08 47.4 3.1 24 64-87 5-28 (191)
415 COG1373 Predicted ATPase (AAA+ 96.8 0.01 2.2E-07 47.7 8.5 35 67-106 39-73 (398)
416 PRK03731 aroL shikimate kinase 96.8 0.0011 2.3E-08 46.7 2.6 22 66-87 3-24 (171)
417 PF03215 Rad17: Rad17 cell cyc 96.8 0.0024 5.1E-08 53.0 5.0 46 42-87 19-67 (519)
418 PRK08760 replicative DNA helic 96.8 0.013 2.8E-07 48.2 9.2 71 45-119 210-280 (476)
419 TIGR02974 phageshock_pspF psp 96.8 0.0029 6.4E-08 49.5 5.3 44 44-87 1-44 (329)
420 cd00820 PEPCK_HprK Phosphoenol 96.8 0.0017 3.7E-08 42.6 3.3 22 65-86 15-36 (107)
421 PLN02200 adenylate kinase fami 96.8 0.0014 3E-08 49.0 3.2 23 65-87 43-65 (234)
422 PRK00698 tmk thymidylate kinas 96.7 0.0045 9.7E-08 44.6 5.8 23 65-87 3-25 (205)
423 COG1100 GTPase SAR1 and relate 96.7 0.0013 2.7E-08 47.9 2.9 24 66-89 6-29 (219)
424 cd01428 ADK Adenylate kinase ( 96.7 0.0012 2.5E-08 47.3 2.6 20 68-87 2-21 (194)
425 PRK14532 adenylate kinase; Pro 96.7 0.0012 2.6E-08 47.2 2.6 20 68-87 3-22 (188)
426 TIGR01650 PD_CobS cobaltochela 96.7 0.0051 1.1E-07 48.0 6.2 41 43-87 46-86 (327)
427 COG0465 HflB ATP-dependent Zn 96.7 0.0048 1E-07 51.7 6.4 51 39-89 147-207 (596)
428 COG0194 Gmk Guanylate kinase [ 96.7 0.0031 6.7E-08 45.3 4.6 25 65-89 4-28 (191)
429 PRK09302 circadian clock prote 96.7 0.0059 1.3E-07 50.5 6.9 63 51-116 17-79 (509)
430 COG1102 Cmk Cytidylate kinase 96.7 0.0012 2.6E-08 46.4 2.3 22 67-88 2-23 (179)
431 TIGR00665 DnaB replicative DNA 96.7 0.02 4.3E-07 46.4 9.8 66 49-118 180-245 (434)
432 PF06309 Torsin: Torsin; Inte 96.7 0.0039 8.5E-08 42.0 4.8 46 42-87 25-75 (127)
433 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0015 3.2E-08 45.8 2.9 21 67-87 2-22 (171)
434 cd04139 RalA_RalB RalA/RalB su 96.7 0.0018 3.8E-08 44.6 3.2 22 67-88 2-23 (164)
435 COG2842 Uncharacterized ATPase 96.7 0.014 3.1E-07 44.7 8.2 102 41-156 71-173 (297)
436 PF13604 AAA_30: AAA domain; P 96.7 0.0042 9.1E-08 45.0 5.2 36 49-87 5-40 (196)
437 COG1763 MobB Molybdopterin-gua 96.7 0.0012 2.7E-08 46.4 2.3 23 65-87 2-24 (161)
438 PRK08356 hypothetical protein; 96.7 0.0019 4.1E-08 46.7 3.3 21 65-85 5-25 (195)
439 PF00005 ABC_tran: ABC transpo 96.7 0.002 4.4E-08 43.4 3.3 24 65-88 11-34 (137)
440 COG0237 CoaE Dephospho-CoA kin 96.7 0.0017 3.8E-08 47.3 3.1 23 65-87 2-24 (201)
441 COG1126 GlnQ ABC-type polar am 96.7 0.0032 6.9E-08 46.4 4.3 24 64-87 27-50 (240)
442 PRK09281 F0F1 ATP synthase sub 96.7 0.0066 1.4E-07 50.1 6.7 90 64-157 161-263 (502)
443 PRK09825 idnK D-gluconate kina 96.6 0.0017 3.6E-08 46.3 2.9 22 66-87 4-25 (176)
444 KOG0727 26S proteasome regulat 96.6 0.0046 1E-07 46.8 5.2 46 43-88 156-212 (408)
445 PRK13976 thymidylate kinase; P 96.6 0.0065 1.4E-07 44.6 6.0 25 67-93 2-26 (209)
446 PRK13343 F0F1 ATP synthase sub 96.6 0.006 1.3E-07 50.3 6.3 90 64-157 161-263 (502)
447 PHA02530 pseT polynucleotide k 96.6 0.0017 3.7E-08 49.8 3.1 22 66-87 3-24 (300)
448 KOG0728 26S proteasome regulat 96.6 0.0047 1E-07 46.7 5.2 43 46-88 151-204 (404)
449 PF01926 MMR_HSR1: 50S ribosom 96.6 0.0021 4.6E-08 42.2 3.1 21 68-88 2-22 (116)
450 COG1116 TauB ABC-type nitrate/ 96.6 0.0018 3.9E-08 48.4 3.0 23 65-87 29-51 (248)
451 smart00072 GuKc Guanylate kina 96.6 0.0025 5.3E-08 45.6 3.6 24 65-88 2-25 (184)
452 PTZ00494 tuzin-like protein; P 96.6 0.03 6.5E-07 45.9 10.0 79 38-124 367-446 (664)
453 PRK14490 putative bifunctional 96.6 0.0028 6.1E-08 50.3 4.3 29 64-94 4-32 (369)
454 KOG1532 GTPase XAB1, interacts 96.6 0.0022 4.7E-08 48.9 3.4 32 63-96 17-48 (366)
455 TIGR00073 hypB hydrogenase acc 96.6 0.0021 4.6E-08 46.8 3.3 25 63-87 20-44 (207)
456 TIGR00960 3a0501s02 Type II (G 96.6 0.0039 8.4E-08 45.5 4.6 24 65-88 29-52 (216)
457 smart00487 DEXDc DEAD-like hel 96.6 0.02 4.4E-07 40.0 8.2 22 66-87 25-47 (201)
458 cd02034 CooC The accessory pro 96.6 0.0095 2.1E-07 39.6 6.0 20 68-87 2-21 (116)
459 PRK08154 anaerobic benzoate ca 96.6 0.004 8.7E-08 48.3 4.9 24 64-87 132-155 (309)
460 TIGR00176 mobB molybdopterin-g 96.6 0.0016 3.4E-08 45.6 2.3 21 67-87 1-21 (155)
461 PRK14531 adenylate kinase; Pro 96.6 0.002 4.3E-08 46.1 2.9 21 67-87 4-24 (183)
462 cd02022 DPCK Dephospho-coenzym 96.6 0.0016 3.5E-08 46.4 2.4 21 67-87 1-21 (179)
463 PLN02796 D-glycerate 3-kinase 96.6 0.007 1.5E-07 47.6 6.1 24 64-87 99-122 (347)
464 PRK14493 putative bifunctional 96.6 0.0025 5.4E-08 48.7 3.5 28 66-95 2-29 (274)
465 PF03029 ATP_bind_1: Conserved 96.6 0.0025 5.3E-08 47.7 3.4 19 70-88 1-19 (238)
466 PRK09165 replicative DNA helic 96.6 0.025 5.3E-07 46.9 9.5 39 48-87 201-239 (497)
467 PF13245 AAA_19: Part of AAA d 96.6 0.0052 1.1E-07 37.7 4.3 23 65-87 10-33 (76)
468 PRK01184 hypothetical protein; 96.6 0.0022 4.8E-08 45.7 3.0 21 66-87 2-22 (184)
469 cd01130 VirB11-like_ATPase Typ 96.5 0.0057 1.2E-07 43.8 5.1 23 65-87 25-47 (186)
470 cd01858 NGP_1 NGP-1. Autoanti 96.5 0.0068 1.5E-07 42.1 5.4 44 46-89 82-126 (157)
471 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0044 9.6E-08 45.3 4.6 24 65-88 30-53 (218)
472 cd01125 repA Hexameric Replica 96.5 0.017 3.6E-07 43.0 7.8 21 67-87 3-23 (239)
473 PRK13768 GTPase; Provisional 96.5 0.0038 8.3E-08 47.0 4.4 22 66-87 3-24 (253)
474 TIGR00455 apsK adenylylsulfate 96.5 0.0027 5.8E-08 45.3 3.3 24 64-87 17-40 (184)
475 KOG0726 26S proteasome regulat 96.5 0.0054 1.2E-07 47.3 5.0 46 42-87 185-241 (440)
476 PRK06731 flhF flagellar biosyn 96.5 0.02 4.3E-07 43.7 8.2 23 65-87 75-97 (270)
477 KOG0651 26S proteasome regulat 96.5 0.0049 1.1E-07 47.8 4.8 30 64-95 165-194 (388)
478 TIGR01420 pilT_fam pilus retra 96.5 0.0034 7.4E-08 49.4 4.1 23 65-87 122-144 (343)
479 KOG2228 Origin recognition com 96.5 0.0071 1.5E-07 47.4 5.7 114 40-156 22-145 (408)
480 cd01862 Rab7 Rab7 subfamily. 96.5 0.0023 5.1E-08 44.4 2.9 22 67-88 2-23 (172)
481 cd04163 Era Era subfamily. Er 96.5 0.0029 6.3E-08 43.2 3.3 24 65-88 3-26 (168)
482 COG0529 CysC Adenylylsulfate k 96.5 0.0023 4.9E-08 45.7 2.7 29 64-94 22-50 (197)
483 PRK15424 propionate catabolism 96.5 0.011 2.3E-07 49.4 7.1 48 41-88 218-265 (538)
484 PRK13695 putative NTPase; Prov 96.5 0.0025 5.4E-08 45.1 3.0 21 67-87 2-22 (174)
485 PF05970 PIF1: PIF1-like helic 96.5 0.0088 1.9E-07 47.5 6.3 24 64-87 21-44 (364)
486 PRK08099 bifunctional DNA-bind 96.5 0.0021 4.6E-08 51.6 2.9 25 64-88 218-242 (399)
487 TIGR02673 FtsE cell division A 96.5 0.0049 1.1E-07 44.9 4.6 24 65-88 28-51 (214)
488 TIGR01166 cbiO cobalt transpor 96.5 0.0052 1.1E-07 44.0 4.6 24 65-88 18-41 (190)
489 cd03269 ABC_putative_ATPase Th 96.5 0.0052 1.1E-07 44.7 4.7 24 65-88 26-49 (210)
490 PF10662 PduV-EutP: Ethanolami 96.5 0.0026 5.5E-08 43.9 2.8 23 66-88 2-24 (143)
491 cd04119 RJL RJL (RabJ-Like) su 96.5 0.0025 5.4E-08 43.9 2.8 21 68-88 3-23 (168)
492 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.0022 4.8E-08 40.0 2.3 21 67-87 1-21 (99)
493 COG0703 AroK Shikimate kinase 96.5 0.0024 5.3E-08 45.3 2.7 28 66-95 3-30 (172)
494 smart00173 RAS Ras subfamily o 96.5 0.0025 5.4E-08 44.0 2.8 22 67-88 2-23 (164)
495 PRK05748 replicative DNA helic 96.5 0.027 5.9E-07 45.9 9.1 55 63-120 201-255 (448)
496 cd03265 ABC_DrrA DrrA is the A 96.5 0.005 1.1E-07 45.1 4.5 24 65-88 26-49 (220)
497 PRK02496 adk adenylate kinase; 96.5 0.0027 5.9E-08 45.2 3.0 21 67-87 3-23 (184)
498 cd03116 MobB Molybdenum is an 96.5 0.0029 6.2E-08 44.5 3.0 22 66-87 2-23 (159)
499 cd04155 Arl3 Arl3 subfamily. 96.4 0.0026 5.7E-08 44.4 2.8 24 65-88 14-37 (173)
500 TIGR00231 small_GTP small GTP- 96.4 0.0028 6.1E-08 42.7 2.9 23 67-89 3-25 (161)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.88 E-value=9.4e-22 Score=168.18 Aligned_cols=109 Identities=28% Similarity=0.354 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcc-cccccCeeEEEEcCCCCCHHHHHHHHHHHhCCC
Q 045087 45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNY-MKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS 123 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~ 123 (157)
||.+..++++.+.|..++. .+++|+||||+||||||+.++++.. ++.+|+..+||.+++.++...+.++|+..++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 9999999999999998864 8999999999999999999999877 999999999999999999999999999999873
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 124 SRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
... ....+.+++...|.+.|++||||||||||
T Consensus 239 ~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDI 270 (889)
T KOG4658|consen 239 DEE--WEDKEEDELASKLLNLLEGKRFLLVLDDI 270 (889)
T ss_pred Ccc--cchhhHHHHHHHHHHHhccCceEEEEecc
Confidence 321 23444579999999999999999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.87 E-value=9.4e-22 Score=149.64 Aligned_cols=110 Identities=28% Similarity=0.378 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC
Q 045087 47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL 126 (157)
Q Consensus 47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~ 126 (157)
|+.++++|.++|.......++|+|+||||+||||||..++++..++.+|+.++|+.++...+..+++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998667899999999999999999999999666899999999999999988999999999999986431
Q ss_pred cccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 127 SEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
. ....+.+++...+.+.|.+++||||||||
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv 110 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDV 110 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE
T ss_pred c-ccccccccccccchhhhccccceeeeeee
Confidence 1 14567788999999999999999999996
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=1.4e-16 Score=140.80 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=83.6
Q ss_pred cccCCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc---CCC-----
Q 045087 35 ISSSSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE---PYT----- 106 (157)
Q Consensus 35 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~----- 106 (157)
..++...+.+||++.++++|..+|..+....++++||||||+||||||+++|+ .+..+|+..+|+.. ...
T Consensus 177 ~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 177 LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34455678899999999999999976667789999999999999999999999 78889999888742 111
Q ss_pred ------CC-HHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 107 ------CY-ADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 107 ------~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
+. ...+...++..+..... ..... ...+++.|.++|+|||||||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv 305 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDL 305 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCC
Confidence 01 12344555555544322 11111 24577889999999999997
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=2.4e-12 Score=102.25 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=88.2
Q ss_pred CcccCCCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc--CeeEEEEcCCCCCH
Q 045087 34 GISSSSKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF--DCHAWVQEPYTCYA 109 (157)
Q Consensus 34 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~ 109 (157)
...+...++.++||++++++|...|... ......+.|+|++|+|||++++.+++ ...... -..+++++....+.
T Consensus 22 ~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 22 VLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred hCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCH
Confidence 3444556788999999999999998442 23345678999999999999999998 343322 34567777777788
Q ss_pred HHHHHHHHHHhCCC-CCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087 110 DQILDIIIKFLMPS-SRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 110 ~~~l~~i~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
..++..|+.++... .+ ....+.+++...+.+.+. ++.++||||++
T Consensus 100 ~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~viviDE~ 147 (394)
T PRK00411 100 YAIFSEIARQLFGHPPP---SSGLSFDELFDKIAEYLDERDRVLIVALDDI 147 (394)
T ss_pred HHHHHHHHHHhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 89999999999762 22 133456778888888875 45689999985
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=3.3e-12 Score=100.42 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=85.4
Q ss_pred cccCCCCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc------CeeEEEEcCCC
Q 045087 35 ISSSSKSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF------DCHAWVQEPYT 106 (157)
Q Consensus 35 ~~~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~ 106 (157)
..+...++.++||++++++|...|.. .......+.|+|++|+|||++++.++++ +.... -..+|+++...
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCC
Confidence 34555667899999999999999864 2234457899999999999999999983 32211 13567787777
Q ss_pred CCHHHHHHHHHHHhCC-CCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087 107 CYADQILDIIIKFLMP-SSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 107 ~~~~~~l~~i~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
.+...++..|+.++.. ....+ ....+..++...+.+.+. +++++||||++
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~ 138 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEI 138 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECch
Confidence 7888999999999952 11111 123345666777777763 56789999985
No 6
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.21 E-value=5.2e-11 Score=84.72 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=34.0
Q ss_pred CccccHHHHHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087 43 DTVGLDDRMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY 94 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 94 (157)
.|+||++++++|...|. ......+.+.|+|.+|+|||+|.++++. .+..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 48999999999999994 3334568999999999999999999988 45444
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.17 E-value=8.7e-11 Score=79.28 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccc-----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHY-----FDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKI 139 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~ 139 (157)
.+.+.|+|.+|+|||+++..+.+ ..... -...+|+.++...+...+...|+.+++.... ...+..++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHH
Confidence 56889999999999999999988 33321 2346688888777999999999999998654 2456778888
Q ss_pred HHHHHhcCCcE-EEEeeCC
Q 045087 140 ILHEYLMTKRY-LIVIDDV 157 (157)
Q Consensus 140 ~l~~~L~~kr~-LlVlDdV 157 (157)
.+.+.+...+. +||+||+
T Consensus 78 ~~~~~l~~~~~~~lviDe~ 96 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEA 96 (131)
T ss_dssp HHHHHHHHCTEEEEEEETT
T ss_pred HHHHHHHhcCCeEEEEeCh
Confidence 88888876654 9999985
No 8
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.4e-10 Score=86.78 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=89.1
Q ss_pred CCCCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccC-e-eEEEEcCCCCCHHHHH
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFD-C-HAWVQEPYTCYADQIL 113 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~~~~~~~~~~~l 113 (157)
...++.+.+|+.++++|...|.. .+....-+.|+|.+|+|||+.++.+++ ++..... . .+++++-...++.+++
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHH
Confidence 34455699999999999988854 222233489999999999999999999 5655432 2 6899999999999999
Q ss_pred HHHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087 114 DIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 114 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
..|+.+++... ...++..+..+.+.+.+. ++.+++|||++
T Consensus 91 ~~i~~~~~~~p----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEi 132 (366)
T COG1474 91 SKILNKLGKVP----LTGDSSLEILKRLYDNLSKKGKTVIVILDEV 132 (366)
T ss_pred HHHHHHcCCCC----CCCCchHHHHHHHHHHHHhcCCeEEEEEcch
Confidence 99999998422 245667888888888885 47899999985
No 9
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.12 E-value=2.3e-10 Score=85.85 Aligned_cols=92 Identities=11% Similarity=-0.082 Sum_probs=60.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC--CCHHHHHHHHHHHhCCCCC-Ccc-cccccHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT--CYADQILDIIIKFLMPSSR-LSE-IKDKNYEMKKII 140 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~l~~i~~~l~~~~~-~~~-~~~~~~~~~~~~ 140 (157)
...+.|+|.+|+|||||++.+|++.... +|+..+|+.+... ++..++++.+...+..... .+. ....-.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4588999999999999999999964444 8999999986554 7899999998443322211 000 001111122333
Q ss_pred HHHH-hcCCcEEEEeeCC
Q 045087 141 LHEY-LMTKRYLIVIDDV 157 (157)
Q Consensus 141 l~~~-L~~kr~LlVlDdV 157 (157)
...+ -.+++++|++|++
T Consensus 95 a~~~~~~G~~vll~iDei 112 (249)
T cd01128 95 AKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHCCCCEEEEEECH
Confidence 3322 2589999999985
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.11 E-value=2.4e-09 Score=80.78 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=55.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEY 144 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 144 (157)
...+.|+|.+|+|||||++.+++.... ..+ ..+|+. ....+..+++..|+..++.+.. ..+...+...+..+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHH
Confidence 458899999999999999999984321 111 122332 3345778899999988866432 12223333333332
Q ss_pred -----hcCCcEEEEeeCC
Q 045087 145 -----LMTKRYLIVIDDV 157 (157)
Q Consensus 145 -----L~~kr~LlVlDdV 157 (157)
..+++++||+||+
T Consensus 115 l~~~~~~~~~~vliiDe~ 132 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEA 132 (269)
T ss_pred HHHHHhCCCCeEEEEECc
Confidence 2678899999985
No 11
>PTZ00202 tuzin; Provisional
Probab=99.10 E-value=5.1e-09 Score=83.68 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=73.8
Q ss_pred cCCCCCCccccHHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087 37 SSSKSRDTVGLDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI 115 (157)
Q Consensus 37 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~ 115 (157)
.+++...|+||+.++.+|...|...+ ...+++.|+|++|+|||||++.+.+. .. + .+++.... +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEECCC--CHHHHHHH
Confidence 34567899999999999999986432 34568999999999999999999873 32 1 23333333 67999999
Q ss_pred HHHHhCCCCCCcccccccHHHHHHHHHHHh-----c-CCcEEEEe
Q 045087 116 IIKFLMPSSRLSEIKDKNYEMKKIILHEYL-----M-TKRYLIVI 154 (157)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVl 154 (157)
++.+|+.+.. ....++...|.+.| . +++.+||+
T Consensus 329 LL~ALGV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 329 VVKALGVPNV------EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHcCCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999997332 22344555555544 2 67777776
No 12
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.02 E-value=5.4e-09 Score=89.29 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=82.1
Q ss_pred ccCCCCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCccccc-----ccC--eeEEEEcCC
Q 045087 36 SSSSKSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH-----YFD--CHAWVQEPY 105 (157)
Q Consensus 36 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~--~~~wv~~~~ 105 (157)
.+...++.+.||++++++|...|.. +.....++.|+|.+|.|||++++.|.+ ++.. .+. ..++|.+..
T Consensus 749 ~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLr--ELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 749 QLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQ--LLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHH--HHHHHHhhccCCCceEEEEeCCc
Confidence 4445668999999999999988854 233345778999999999999999987 3321 111 256777777
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc---CCcEEEEeeCC
Q 045087 106 TCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 106 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
-.++..++..|+.+|....+ ....+..+.+..+...+. ....+||||+|
T Consensus 827 Lstp~sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEI 878 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEI 878 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehH
Confidence 67888999999999965433 233444556666666552 22368999986
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.00 E-value=1.3e-09 Score=79.92 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=40.6
Q ss_pred ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
|+||++++++|.+++..+. ...+.|+|+.|+|||+|++.+.+ ..++.-...+|+....
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~ 58 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLE 58 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTT
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEeccc
Confidence 7999999999999887653 56899999999999999999988 4433222344444433
No 14
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.95 E-value=1.4e-09 Score=85.79 Aligned_cols=89 Identities=12% Similarity=0.000 Sum_probs=59.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC--CHHHHHHHHHHHhCCCCCCcccccccHH------
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC--YADQILDIIIKFLMPSSRLSEIKDKNYE------ 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~l~~i~~~l~~~~~~~~~~~~~~~------ 135 (157)
+.....|+|++|+||||||+.+|++.... +|++.+|+.+.+.+ ...++++.++..+-.+. .+.....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st----~d~~~~~~~~~a~ 242 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST----FDEPAERHVQVAE 242 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC----CCCCHHHHHHHHH
Confidence 34578899999999999999999954333 89999999987776 67778777763222211 1111111
Q ss_pred HHHHHHHHH-hcCCcEEEEeeCC
Q 045087 136 MKKIILHEY-LMTKRYLIVIDDV 157 (157)
Q Consensus 136 ~~~~~l~~~-L~~kr~LlVlDdV 157 (157)
.....-..+ ..++++||++|++
T Consensus 243 ~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 243 MVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEEECh
Confidence 111221222 3689999999985
No 15
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.88 E-value=2.6e-08 Score=67.30 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC
Q 045087 45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT 106 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 106 (157)
+|++..+.++...+... ....+.|+|.+|+|||++++.+++ .....-...+++.....
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhh
Confidence 47888889998888664 345888999999999999999998 33222234555655443
No 16
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.83 E-value=1.3e-08 Score=80.67 Aligned_cols=93 Identities=11% Similarity=-0.059 Sum_probs=60.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC--CCHHHHHHHHHHHhCCCCCC-cccc-cccHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT--CYADQILDIIIKFLMPSSRL-SEIK-DKNYEMKKI 139 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~l~~i~~~l~~~~~~-~~~~-~~~~~~~~~ 139 (157)
....++|+|.+|+|||||++.+++.... ++|+..+|+.+.+. .+..++++.++..+-..... +... ..-.+...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3457899999999999999999994322 36999999988754 78899999986544332210 0000 000112222
Q ss_pred HHHHH-hcCCcEEEEeeCC
Q 045087 140 ILHEY-LMTKRYLIVIDDV 157 (157)
Q Consensus 140 ~l~~~-L~~kr~LlVlDdV 157 (157)
....+ -.+++++|++|++
T Consensus 246 ~Ae~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHHHcCCCeEEEEECh
Confidence 22222 2689999999985
No 17
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.79 E-value=6.6e-08 Score=77.75 Aligned_cols=71 Identities=14% Similarity=-0.001 Sum_probs=56.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI 115 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~ 115 (157)
..++++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|....|+.+.+.++..+++..
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG 244 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcc
Confidence 356888899999999888764 36888999999999999999885433446777889999988887776643
No 18
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.76 E-value=1.2e-07 Score=74.27 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCC-ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQ-LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
.+.+.+|+.++..|..++...+.. ...+.|+|-.|.|||.+.+.+++.. . ...+|+++-..++...++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHH
Confidence 467899999999999999776543 3455899999999999999999944 2 246899999999999999999999
Q ss_pred hCC-CCCCccccc--ccHHHHHHHHHH--Hhc--CCcEEEEeeCC
Q 045087 120 LMP-SSRLSEIKD--KNYEMKKIILHE--YLM--TKRYLIVIDDV 157 (157)
Q Consensus 120 l~~-~~~~~~~~~--~~~~~~~~~l~~--~L~--~kr~LlVlDdV 157 (157)
... ..+....+. .+....+..+.+ ... ++.++||||++
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna 124 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA 124 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH
Confidence 963 222111111 233344444444 222 45899999985
No 19
>PF05729 NACHT: NACHT domain
Probab=98.63 E-value=7.5e-08 Score=67.00 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=46.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCH---HHHHHHHHHHhCCCCCCcccccccHHHHH
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYA---DQILDIIIKFLMPSSRLSEIKDKNYEMKK 138 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~---~~~l~~i~~~l~~~~~~~~~~~~~~~~~~ 138 (157)
+++.|+|.+|+||||+++.++.+..-... +...+|+........ ..+...|..+..... .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-------APIEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-------hhhHHHH
Confidence 47889999999999999999874322222 334556655443222 134444433333221 1111111
Q ss_pred HHHHHHhcCCcEEEEeeCC
Q 045087 139 IILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 139 ~~l~~~L~~kr~LlVlDdV 157 (157)
..+. -..+++|||||++
T Consensus 74 ~~~~--~~~~~~llilDgl 90 (166)
T PF05729_consen 74 QELL--EKNKRVLLILDGL 90 (166)
T ss_pred HHHH--HcCCceEEEEech
Confidence 1111 2578899999974
No 20
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.56 E-value=1.7e-07 Score=68.98 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=38.0
Q ss_pred CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.-++|+|.++-++.+.-++.. .......+.+||++|+||||||..+.+ +....|
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 457899999999988766642 234577899999999999999999999 565555
No 21
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.55 E-value=2.9e-07 Score=70.80 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=38.6
Q ss_pred CCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|+|+++.+++|..++... ......+.++|++|+|||+||+.+.+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999988631 23355688999999999999999988
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=1.3e-06 Score=76.14 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHH
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIK 118 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~ 118 (157)
....++-|..-.+.| ... ...+++.|.|++|.||||++...++. +..++|+++.. +.++..+...++.
T Consensus 12 ~~~~~~~R~rl~~~l----~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 12 RLHNTVVRERLLAKL----SGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CccccCcchHHHHHH----hcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 345667776555444 332 35789999999999999999987762 23688999864 4567778888888
Q ss_pred HhCCCCCC--cc-------cccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087 119 FLMPSSRL--SE-------IKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 119 ~l~~~~~~--~~-------~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
.+...... +. ....+...+...+...|. +.+++|||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~ 130 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDY 130 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence 77531110 00 111223344444444443 67899999996
No 23
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=2.6e-06 Score=65.25 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCccccHH---HHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc------CeeEEEEcCCCCCHHH
Q 045087 42 RDTVGLDD---RMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF------DCHAWVQEPYTCYADQ 111 (157)
Q Consensus 42 ~~~vGr~~---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~ 111 (157)
+..+|... -++.|.++|... ..+.+-+.|+|.+|.|||++++++.+. .-..+ -.++.+..+..++...
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEecCCCCChHH
Confidence 45556433 455566666543 356678999999999999999999762 11112 2456777889999999
Q ss_pred HHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 112 ILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 112 ~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
++..|+.+++.+.. ...+...+...+...|+. +--+||+|++
T Consensus 112 ~Y~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~ 154 (302)
T PF05621_consen 112 FYSAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEF 154 (302)
T ss_pred HHHHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence 99999999998764 334445555555555543 3458888875
No 24
>PRK04195 replication factor C large subunit; Provisional
Probab=98.53 E-value=5.6e-07 Score=73.67 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=40.4
Q ss_pred CCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.++++|.++.+++|.+|+..- ....+.+.|+|++|+||||+|+.++++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999998642 223678999999999999999999883
No 25
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.52 E-value=7.5e-07 Score=65.71 Aligned_cols=102 Identities=15% Similarity=0.025 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH----hCCCCCCc
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF----LMPSSRLS 127 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~----l~~~~~~~ 127 (157)
..|-++|..+-....++.|+|.+|+|||++|.+++. .....-..++|++.. .++...+. +++.. +..+....
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~ 85 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIF 85 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEE
Confidence 345555555545678999999999999999988876 333334667899887 56655443 23222 11100000
Q ss_pred c-cccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 128 E-IKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 128 ~-~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
. .......+.+..+..++..+.-++|+|.+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 86 EPSSFEEQSEAIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred eCCCHHHHHHHHHHHHHHHHhcccEEEEeCc
Confidence 0 11112233445555555567779999975
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.52 E-value=6.2e-07 Score=69.92 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=40.0
Q ss_pred CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|+|+++.++.|..++.. .......+.++|++|+|||+||+.+++
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH
Confidence 456799999999999888853 223456788999999999999999998
No 27
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.49 E-value=3.2e-07 Score=73.68 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCccccHHHHHH---HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++++|++..+.. |.+++..+ ....+.++|++|+||||||+.+++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 4568999888766 77777654 355788899999999999999988
No 28
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=2.5e-06 Score=68.47 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=81.9
Q ss_pred CCCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI 115 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~ 115 (157)
+..+..++||+.++..+.+|+... ....+-+.|.|-+|.|||.+...++.+..-...--+.+++++-.-.....++..
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 356788999999999999998652 345667888899999999999988884322111124567776665677888888
Q ss_pred HHHHhCCCCCCcccccccHHHHHHHHHHHhcCCc--EEEEeeCC
Q 045087 116 IIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKR--YLIVIDDV 157 (157)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr--~LlVlDdV 157 (157)
|+..+..... ......+....+..+..+.+ +|+|||+.
T Consensus 226 I~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEm 265 (529)
T KOG2227|consen 226 IFSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEM 265 (529)
T ss_pred HHHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechh
Confidence 8888843221 22233677777777775544 89999963
No 29
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.45 E-value=3.3e-06 Score=62.18 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc------CeeEEEEcCCCCCHHHHHHHHHHHhCCCCC
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF------DCHAWVQEPYTCYADQILDIIIKFLMPSSR 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~ 125 (157)
..|-++|..+-....++.|+|.+|+|||+||..+... ....- ..++|++....++...+. .++........
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~ 82 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPE 82 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchh
Confidence 3444555444456779999999999999999888652 22222 456899887777765543 33333322110
Q ss_pred -----CcccccccHHHHHHHHHHHhc----CCcEEEEeeCC
Q 045087 126 -----LSEIKDKNYEMKKIILHEYLM----TKRYLIVIDDV 157 (157)
Q Consensus 126 -----~~~~~~~~~~~~~~~l~~~L~----~kr~LlVlDdV 157 (157)
.--....+.+++...+...+. .+.-|+|+|.+
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 83 EVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred hhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 000223455666666666553 34569999975
No 30
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.44 E-value=1.3e-06 Score=58.29 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
..+.|+|.+|+||||+++.++. .........+++....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEE
Confidence 5789999999999999999988 4443332344554443
No 31
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.42 E-value=3e-06 Score=62.77 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-C-
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR-L- 126 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~- 126 (157)
.|-.+|..+-....++.|+|.+|+|||+||..++........ ...++|++....++...+.+ ++........ .
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~ 85 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVL 85 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHh
Confidence 344444444456789999999999999999888643222221 35788999888777655443 3333322110 0
Q ss_pred cc---ccccc---HHHHHHHHHHHhc-C-CcEEEEeeCC
Q 045087 127 SE---IKDKN---YEMKKIILHEYLM-T-KRYLIVIDDV 157 (157)
Q Consensus 127 ~~---~~~~~---~~~~~~~l~~~L~-~-kr~LlVlDdV 157 (157)
.. ....+ ...++..+...+. . +--|||+|.+
T Consensus 86 ~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 86 DNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred cCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 00 11122 2334455555553 3 5679999975
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.40 E-value=1.6e-06 Score=67.35 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|++..++.|.+++..+. .+.+.++|++|+||||+|+.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999887643 45688999999999999999877
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.40 E-value=9e-07 Score=69.77 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=35.0
Q ss_pred CCCccccHHHH---HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 41 SRDTVGLDDRM---EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 41 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
-.++||.+.-+ .-|.+++..+ ...-+-+||++|+||||||+.+.. .....|
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f 76 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAF 76 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCce
Confidence 35667766555 2344444444 466777899999999999999988 444444
No 34
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.37 E-value=2.4e-06 Score=62.21 Aligned_cols=96 Identities=11% Similarity=0.033 Sum_probs=57.1
Q ss_pred HhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh----CCCCCCcc-cccc
Q 045087 58 LIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL----MPSSRLSE-IKDK 132 (157)
Q Consensus 58 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l----~~~~~~~~-~~~~ 132 (157)
|..+-....++.|+|.+|+|||++|.++.. ........++|++... ++...+.+.. ... ..+-.... ....
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~ 80 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFD 80 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHH
Confidence 434445678999999999999999988776 3333456789999876 6666555433 221 01000000 1112
Q ss_pred cHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 133 NYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 133 ~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
+..+.+..+.+.+.. +.-+||+|.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 81 EQGVAIQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHHHHHHhhcCccEEEEeCc
Confidence 223345555555544 4569999974
No 35
>PF13173 AAA_14: AAA domain
Probab=98.36 E-value=5.9e-07 Score=60.71 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=29.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT 106 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 106 (157)
.+++.|.|+.|+|||||++.++.+.. .....+++++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCH
Confidence 46899999999999999999987322 2345667766554
No 36
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.35 E-value=1.7e-06 Score=63.62 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087 47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP 104 (157)
Q Consensus 47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 104 (157)
.+..++.+.+++... ....+.|+|.+|+|||+||+.+++ .........+++++.
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeHH
Confidence 556778888876432 356889999999999999999988 333333445566543
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.34 E-value=1.9e-06 Score=68.20 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=39.6
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.++.|++.++++|.+.+... -...+-+.++|++|+|||++|+++++ .....|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 46789999999998877421 12245688999999999999999998 444443
No 38
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.33 E-value=2.7e-06 Score=72.93 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++||+++++++...|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 579999999999998887654 23456899999999999999988
No 39
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.32 E-value=3.5e-06 Score=73.14 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=37.7
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++||+++++++.+.|.... ..-+.++|.+|+|||++|+.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 578999999999999997654 23456999999999999999977
No 40
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.30 E-value=3.8e-06 Score=67.06 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=36.7
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|+++++++|.+.+... -...+-+.++|++|+|||++|+++++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 35779999999998876321 12345688999999999999999998
No 41
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=1.7e-06 Score=73.83 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=38.4
Q ss_pred CCCccccHHHHH---HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 41 SRDTVGLDDRME---ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 41 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
-++|+|.+..+. .|.+.+..+ +...+.++|++|+||||||+.+++ ....+|
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 456899988774 455655544 356778999999999999999998 444444
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.30 E-value=1.1e-06 Score=58.82 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|.|+|.+|+|||++|+.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 57899999999999999999
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.29 E-value=3.9e-06 Score=62.27 Aligned_cols=38 Identities=5% Similarity=-0.085 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP 104 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 104 (157)
.+.+.++|.+|+|||+|++++++ +.........|++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHH
Confidence 45789999999999999999998 443334455677664
No 44
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=98.29 E-value=3.4e-06 Score=63.72 Aligned_cols=105 Identities=21% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-C
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR-L 126 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~ 126 (157)
..|-++|..+-....+.-|+|.+|+|||.|+..++-...+... =...+|++-...|+...+.+ |++....+.. .
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~ 103 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEI 103 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhccccccchh
Confidence 3455555443345679999999999999999877653233222 23588999988898877654 5555432110 0
Q ss_pred -c---ccccccHHHH---HHHHHHHhc-CCcEEEEeeCC
Q 045087 127 -S---EIKDKNYEMK---KIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 127 -~---~~~~~~~~~~---~~~l~~~L~-~kr~LlVlDdV 157 (157)
. -....+.+++ +..+...+. ++--|||+|.+
T Consensus 104 l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 104 LDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 0 0122333444 444444443 44569999975
No 45
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.28 E-value=1.4e-06 Score=65.01 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=28.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE 103 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 103 (157)
.++|+|.+|.|||||...++. .....|.+..+++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 578999999999999999988 57778866666543
No 46
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.28 E-value=5.3e-06 Score=64.13 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=39.4
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+...+.|..++..+. -...+.++|.+|+|||++|+.+++
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 34678999999999999987643 345777799999999999999988
No 47
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.27 E-value=4.4e-05 Score=57.29 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087 50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102 (157)
Q Consensus 50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 102 (157)
.+..+.+...........+.++|.+|+|||+||.++++ .+...-..+++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it 134 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE
Confidence 34444444433222345788999999999999999998 4433333445553
No 48
>PRK12377 putative replication protein; Provisional
Probab=98.24 E-value=3.1e-05 Score=58.25 Aligned_cols=37 Identities=14% Similarity=-0.050 Sum_probs=28.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE 103 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 103 (157)
...+.++|.+|+|||+||.++.+ .+......++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH
Confidence 45789999999999999999999 44444444566554
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.23 E-value=3.4e-06 Score=66.19 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=51.4
Q ss_pred CccccHHHHHH---HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 43 DTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 43 ~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
+.||.+.-+.+ |.+++..+ ..+-+.+||++|+||||||+.+....+-.. ..||.++..-.-.+=+++|+++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 45555544322 33333333 477788999999999999999988433222 3456655443333333444433
Q ss_pred hCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 120 LMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
.... ..|.++|.+|.+|+|
T Consensus 213 aq~~-------------------~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 213 AQNE-------------------KSLTKRKTILFIDEI 231 (554)
T ss_pred HHHH-------------------HhhhcceeEEEeHHh
Confidence 2221 124566777777764
No 50
>PLN03025 replication factor C subunit; Provisional
Probab=98.23 E-value=8e-06 Score=63.49 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=37.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-.+++|.++.++.|..++..+. .+.+.++|++|+||||+|..+++
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999988876543 45678999999999999999987
No 51
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.23 E-value=1.2e-05 Score=58.90 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH----hCCCCCCc
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF----LMPSSRLS 127 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~----l~~~~~~~ 127 (157)
..|-.+|..+-....++.|+|.+|+||||+|.+++. .....-..++|++....+. +-+.+++.. +...-..
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~- 80 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIV- 80 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEE-
Confidence 445555544445678999999999999999988876 3333334567887655543 333333322 1111000
Q ss_pred ccccccHH---HHHHHHHHHhcCCcEEEEeeCC
Q 045087 128 EIKDKNYE---MKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 128 ~~~~~~~~---~~~~~l~~~L~~kr~LlVlDdV 157 (157)
....+.. ..+..+...+..+.-++|+|.+
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi 112 (218)
T cd01394 81 -FEPMDFNEQGRAIQETETFADEKVDLVVVDSA 112 (218)
T ss_pred -EeCCCHHHHHHHHHHHHHHHhcCCcEEEEech
Confidence 1112222 2334455555555678999964
No 52
>PRK08116 hypothetical protein; Validated
Probab=98.21 E-value=1.7e-05 Score=60.25 Aligned_cols=35 Identities=20% Similarity=0.079 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 102 (157)
..+.++|.+|+|||.||.++++ .+.......++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 3588999999999999999999 4443333455555
No 53
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.21 E-value=6.2e-06 Score=67.74 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=37.6
Q ss_pred CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..++.|.+..+++|.+.+.. +-...+-+.++|++|+|||++|+++++.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 35688899999999887642 1123456889999999999999999993
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.20 E-value=6.3e-06 Score=71.80 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=37.7
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++||+.++++++..|.... ..-+.++|.+|+|||++|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887754 33456899999999999999987
No 55
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.19 E-value=6.3e-06 Score=71.69 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.0
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-..++||+.++.++...|.... ..-+.++|.+|+||||+|+.+..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 3678999999999999887754 23456999999999999999987
No 56
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.17 E-value=9e-06 Score=63.19 Aligned_cols=99 Identities=18% Similarity=0.046 Sum_probs=60.9
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~ 129 (157)
..|-.+|- .+-+..+++.|+|.+|+||||||.++.. .....-..++|+.....++.. .+.+++.+.. .--.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~ 113 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVS 113 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEe
Confidence 44445554 4446678999999999999999988766 333334567788877665543 2344433211 0001
Q ss_pred ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
...+.++.+..+...++ +..-++|+|.|
T Consensus 114 ~p~~~eq~l~~~~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 114 QPDTGEQALEIAETLVRSGAVDIIVVDSV 142 (321)
T ss_pred cCCCHHHHHHHHHHHhhccCCcEEEEcch
Confidence 22345666666666554 45679999975
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.4e-06 Score=71.59 Aligned_cols=47 Identities=26% Similarity=0.172 Sum_probs=38.9
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|.+.-++.|.+++..+. -...+.++|++|+||||+|+.+++.
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999887753 2345689999999999999999874
No 58
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.16 E-value=2.1e-05 Score=60.65 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=38.4
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-.+++|++..++.|..++..+. .+.+.++|.+|+||||+|+.+++
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999987643 44679999999999999999987
No 59
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.16 E-value=1.1e-05 Score=62.85 Aligned_cols=99 Identities=20% Similarity=0.051 Sum_probs=61.0
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~ 129 (157)
..|-.+|- .+-+..+++-|+|++|+||||||.+++. .....-..++|++....+++. .+..++.+.+ .--.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~ 113 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLIS 113 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheec
Confidence 44445554 3445678999999999999999988766 333344567888877766653 2333332110 0001
Q ss_pred ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
...+.++....+...++ +.--|+|+|.|
T Consensus 114 ~p~~~eq~l~i~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 114 QPDTGEQALEIADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEcch
Confidence 22345666776666654 44579999975
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=7.8e-06 Score=66.53 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=39.4
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-.+++|.+..+..|.+++..+. -...+.++|++|+||||+|+.++.
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999988764 234578999999999999999987
No 61
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=98.14 E-value=1.9e-05 Score=61.28 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL- 126 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~- 126 (157)
..|-++|..+-....++-|+|.+|+|||+|+..++-...... .=...+|++...+|+++++.+ ++..++.+...
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~ 161 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAV 161 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHh
Confidence 455555555445678999999999999999977653212211 124678999999898888754 45555442110
Q ss_pred -cc---cccccHHHHH---HHHHHHhc-CCcEEEEeeCC
Q 045087 127 -SE---IKDKNYEMKK---IILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 127 -~~---~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdV 157 (157)
.. ....+.++.. ..+...+. ++--|||+|.+
T Consensus 162 l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 162 LDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred cCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 00 1122333333 44444443 34568999975
No 62
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=1.1e-05 Score=60.13 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=37.3
Q ss_pred Cccc-cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 43 DTVG-LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 43 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
.++| ....+..+.++.... ....+.|+|++|+|||+|++.+++ .....-....|+++..
T Consensus 24 f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDK 83 (235)
T ss_pred cccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHH
Confidence 3446 344555555555433 245789999999999999999988 3333323345666543
No 63
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=1.8e-05 Score=65.59 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=38.3
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.++.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999887653 234577899999999999999876
No 64
>PRK08118 topology modulation protein; Reviewed
Probab=98.14 E-value=9.4e-06 Score=57.43 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=27.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEE
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWV 101 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 101 (157)
.|.|+|++|+||||||+.+++...+. -+|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 58899999999999999999854443 346766653
No 65
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.13 E-value=1.8e-05 Score=62.61 Aligned_cols=103 Identities=10% Similarity=-0.045 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCe-eEEEEcCCC-CCHHHHHHHHHHHhCCCCC-Cc
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDC-HAWVQEPYT-CYADQILDIIIKFLMPSSR-LS 127 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~~~~~-~~~~~~l~~i~~~l~~~~~-~~ 127 (157)
.++++++..-. +...+.|+|.+|+|||||++.+++ .+... -+. ++|+.++.. .+..+++..++..+..+.. .+
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 34666665432 335679999999999999999888 44332 233 366666654 5688999999887665331 00
Q ss_pred ccccccHHHHHHHHHHHh--cCCcEEEEeeCC
Q 045087 128 EIKDKNYEMKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 128 ~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.........+.+++ .+++++||+|++
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 001011111222233333 588999999985
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.9e-05 Score=63.51 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-++++|.+..++.|.+.+..+. -...+.++|++|+||||+|+.+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4679999988888888776653 234578999999999999999977
No 67
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=98.11 E-value=1.3e-05 Score=62.87 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-- 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-- 125 (157)
..|-++|..+-....+.-|+|.+|+|||+|+..++-...... .-...+|++...+|+++++.+ ++..++.+..
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~ 191 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAV 191 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhh
Confidence 344455544445667888999999999999987753222211 124678999999999888765 4555544211
Q ss_pred ---CcccccccHHHHH---HHHHHHhc-CCcEEEEeeCC
Q 045087 126 ---LSEIKDKNYEMKK---IILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 126 ---~~~~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdV 157 (157)
..-....+.+++. ..+...+. ++--|||+|.+
T Consensus 192 l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 192 LDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0001223444433 33333443 34568999975
No 68
>PRK08727 hypothetical protein; Validated
Probab=98.10 E-value=2.3e-05 Score=58.31 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=37.3
Q ss_pred CCcccc-HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 42 RDTVGL-DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 42 ~~~vGr-~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
++|++. ...+..+..+.... ....+.|+|.+|+|||+|++++++ ...+......|++..+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA 79 (233)
T ss_pred hhccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH
Confidence 445444 34444444333222 234699999999999999999988 4444444556776543
No 69
>PRK09354 recA recombinase A; Provisional
Probab=98.10 E-value=9.3e-06 Score=63.69 Aligned_cols=99 Identities=21% Similarity=0.053 Sum_probs=62.6
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~ 129 (157)
..|-.+|- .+-+..+++-|+|.+|+||||||.+++. .....-..++|+.....++.. .+.+++.+.. .--.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~ 118 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVS 118 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEe
Confidence 44555565 4446678999999999999999988776 333444677899887776653 2344433210 0001
Q ss_pred ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
...+.++.+..+...++ +..-|||+|.|
T Consensus 119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSv 147 (349)
T PRK09354 119 QPDTGEQALEIADTLVRSGAVDLIVVDSV 147 (349)
T ss_pred cCCCHHHHHHHHHHHhhcCCCCEEEEeCh
Confidence 22345666666666654 45579999975
No 70
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.10 E-value=1.7e-05 Score=69.24 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++||+.++.++...|.... ..-+.++|.+|+|||++|+.+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 569999999999999987754 23455899999999999999887
No 71
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=2.8e-05 Score=63.07 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=26.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCccccccc-C-eeEEEE
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYF-D-CHAWVQ 102 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~ 102 (157)
...+.|+|.+|+|||+|++++++ .+...+ . ..+|++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT 167 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE
Confidence 45699999999999999999998 544432 2 344554
No 72
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.09 E-value=2.9e-05 Score=62.20 Aligned_cols=46 Identities=24% Similarity=0.233 Sum_probs=36.5
Q ss_pred CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|.+...++|.+.+.. +-...+-+.++|++|+|||+||+++++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999988877631 112356788999999999999999998
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=4.4e-05 Score=60.43 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=38.8
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-++++|.+.-++.|.+.+..+. -...+.++|++|+||||+|+.+.+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 4678999999999999887653 234678999999999999999987
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.08 E-value=3e-05 Score=62.17 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=31.2
Q ss_pred ccccHHH--HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087 44 TVGLDDR--MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY 94 (157)
Q Consensus 44 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 94 (157)
++|.... ...+.++..........+.|+|.+|+|||+|++++++ .+.+.
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~--~l~~~ 163 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--EILEN 163 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH--HHHHh
Confidence 5565443 2233333333222345788999999999999999998 44443
No 75
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=2.6e-05 Score=67.59 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=38.8
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|.+.-++.|.+++..+. -...+.++|.+|+||||+|+.+++.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999987653 2334578999999999999999873
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.3e-05 Score=65.88 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=38.2
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999987653 234557999999999999998876
No 77
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.07 E-value=2.2e-05 Score=59.65 Aligned_cols=92 Identities=11% Similarity=0.182 Sum_probs=56.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH---
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE--- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~--- 135 (157)
+...++|.|.+|+|||||+..+++ .++.+|.. ++++.++... ...+++..+...-...... ...+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456789999999999999999999 66656644 4455666654 3566666665431111000 001111222
Q ss_pred --HHHHHHHHHh--c-CCcEEEEeeCC
Q 045087 136 --MKKIILHEYL--M-TKRYLIVIDDV 157 (157)
Q Consensus 136 --~~~~~l~~~L--~-~kr~LlVlDdV 157 (157)
...-.+.+++ + ++.+||++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 2233455565 3 88999999985
No 78
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.06 E-value=4.9e-05 Score=56.10 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH 93 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 93 (157)
.....+...........+.|+|..|+|||.|.+++++ ++.+
T Consensus 20 ~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~ 60 (219)
T PF00308_consen 20 YAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQK 60 (219)
T ss_dssp HHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHh
Confidence 3333433333333456789999999999999999998 5544
No 79
>PRK07261 topology modulation protein; Provisional
Probab=98.06 E-value=2.5e-05 Score=55.49 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=32.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEcCCCCCHHHHHHHHHHHhC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQEPYTCYADQILDIIIKFLM 121 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~l~~i~~~l~ 121 (157)
.|.|+|++|+||||||+.+.....+. -+.+...|-......+..++...+...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHh
Confidence 47899999999999999987632221 12344445332233344455555544443
No 80
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=98.05 E-value=4.1e-05 Score=59.23 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=60.8
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR-- 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-- 125 (157)
..+..+|..+-....++-|+|.+|+|||+++.+++........ -...+|++....|+.+.+.+. +..++.+..
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~-~~~~gl~~~~~ 160 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM-AEARGLDPDEV 160 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH-HHHcCCCHHHH
Confidence 3344445444455778999999999999999888653222111 126889999888888776543 444432210
Q ss_pred -----Ccc-cccccHHHHHHHHHHHhcCC---cEEEEeeCC
Q 045087 126 -----LSE-IKDKNYEMKKIILHEYLMTK---RYLIVIDDV 157 (157)
Q Consensus 126 -----~~~-~~~~~~~~~~~~l~~~L~~k---r~LlVlDdV 157 (157)
... ........++..+.+.+... .-|||+|.+
T Consensus 161 ~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSi 201 (310)
T TIGR02236 161 LKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSL 201 (310)
T ss_pred hhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 000 01111223445555555432 458999965
No 81
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.05 E-value=1.9e-05 Score=58.90 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=38.8
Q ss_pred CCCCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+.++|.+.+.+.|.+-... .......+.+||..|.|||+|++++.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence 34567899999999998664421 222456788899999999999999987
No 82
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.05 E-value=1.2e-05 Score=57.00 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=28.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEE
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWV 101 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 101 (157)
...+|.++|++|+||||+|+.++. .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356899999999999999999988 555555555555
No 83
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=3.5e-05 Score=64.83 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=38.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++||.+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997764 234568899999999999998876
No 84
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.04 E-value=3.6e-05 Score=62.61 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=32.5
Q ss_pred ccccHH--HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 44 TVGLDD--RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 44 ~vGr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
++|... ....+.++..........+.|+|.+|+|||+|++++.+ .+...+
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~ 176 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKN 176 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence 445433 33444444433333345789999999999999999998 555443
No 85
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=98.04 E-value=2.9e-05 Score=60.39 Aligned_cols=106 Identities=13% Similarity=0.045 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSRL 126 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~ 126 (157)
...|-.+|..+-....++.|+|.+|+|||+|+..++........ -...+|++....++...+ ..++..++.....
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~ 160 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPED 160 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHH
Confidence 35566666555466789999999999999999887652122111 125689998887887764 3444444332110
Q ss_pred -----cccccccHHHH---HHHHHHHhc-CCcEEEEeeCC
Q 045087 127 -----SEIKDKNYEMK---KIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 127 -----~~~~~~~~~~~---~~~l~~~L~-~kr~LlVlDdV 157 (157)
.-....+.+++ +..+...+. .+--|||+|.+
T Consensus 161 ~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 161 VLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred hhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECc
Confidence 00112233333 333344443 34569999975
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.04 E-value=1.5e-05 Score=60.29 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=32.4
Q ss_pred CccccHHHHHHHHHHHhc-------------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLIE-------------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|.+...++|.+.... ..+....+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478877777666543211 123456788999999999999999976
No 87
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=4.5e-05 Score=64.27 Aligned_cols=47 Identities=21% Similarity=0.166 Sum_probs=39.6
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999998654 245778999999999999998877
No 88
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.01 E-value=6.8e-06 Score=64.57 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=39.8
Q ss_pred CccccHHHHHHHHHHHhcC----CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 43 DTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+++|.++.+++|.+++... +...+++.++|++|+||||||..+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999998642 235689999999999999999999883
No 89
>PRK08181 transposase; Validated
Probab=98.01 E-value=4.7e-05 Score=57.93 Aligned_cols=35 Identities=11% Similarity=-0.027 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 102 (157)
.-+.++|.+|+|||.||.++.+ ........+.|++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 3589999999999999999987 4433333345544
No 90
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.00 E-value=3.4e-05 Score=63.48 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=35.5
Q ss_pred CCCCccccHHHHHHHHHHHh---c-------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLI---E-------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-.+++|.+...++|.+++. . +....+-+.++|++|+|||+||+.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34578898888777766553 1 112234588999999999999999988
No 91
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.00 E-value=1.4e-05 Score=64.59 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=39.0
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.++.|.+.++++|.+.+... -....-+.++|++|+|||++|+++++ .....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 45678999999998877421 12345678999999999999999999 454444
No 92
>PRK06696 uridine kinase; Validated
Probab=98.00 E-value=1.6e-05 Score=58.69 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHhc-CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 46 GLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.+.+++|.+.+.. ...+..+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 366778888888864 334678999999999999999999987
No 93
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=98.00 E-value=7.5e-05 Score=58.67 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR- 125 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~- 125 (157)
...|-++|..+-....++-|+|.+|+|||+||..++-....... -..++|++...+|+++++. ++++.++.+..
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~ 187 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGAD 187 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhh
Confidence 35565656555456778899999999999999877642222111 1268899999999888764 44555543221
Q ss_pred -Ccc---cccccHHHHHHHHH---HHh-cCCcEEEEeeCC
Q 045087 126 -LSE---IKDKNYEMKKIILH---EYL-MTKRYLIVIDDV 157 (157)
Q Consensus 126 -~~~---~~~~~~~~~~~~l~---~~L-~~kr~LlVlDdV 157 (157)
... ....+.+++...+. ..+ ..+--|||+|.+
T Consensus 188 ~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 188 VLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred hccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 000 12233444433333 333 345579999975
No 94
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.5e-05 Score=64.80 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCCCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCH
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYA 109 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 109 (157)
..+++=|.+..+.+|.+++..- -...+=+.++|++|+|||.||+++.. +..-.| ++++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch---
Confidence 4567889999999998887531 12356678999999999999999999 444333 233221
Q ss_pred HHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 110 DQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 110 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
+ |... +...+++.+.+.+.+.-+.-+|++++|++
T Consensus 258 -e----ivSG---------vSGESEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 258 -E----IVSG---------VSGESEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred -h----hhcc---------cCcccHHHHHHHHHHHhccCCeEEEeecc
Confidence 1 1111 23344566666666666778899999875
No 95
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=7.8e-05 Score=61.83 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=38.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++++|.+.-++.|.+++..+. -...+.++|.+|+||||+|+.+..
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999987653 234567899999999999998866
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=3.1e-05 Score=62.97 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=29.2
Q ss_pred ccccHHH--HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 44 TVGLDDR--MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 44 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|-... ...+..+..........+.|+|..|+|||+|++++.+
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH
Confidence 4565333 3333333333222345689999999999999999988
No 97
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=9.8e-05 Score=57.25 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=52.5
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc----ccccccCeeEEEE-cCCCCCHHHHHHHH
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN----YMKHYFDCHAWVQ-EPYTCYADQILDII 116 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~-~~~~~~~~~~l~~i 116 (157)
.+++|.+..++.|.+++..+. -.....++|+.|+||||+|+.++... ....|++...|.. -+.....++ +..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 568899999999999987653 34567889999999999999887721 1234556555554 334445555 3445
Q ss_pred HHHhC
Q 045087 117 IKFLM 121 (157)
Q Consensus 117 ~~~l~ 121 (157)
...+.
T Consensus 82 ~~~~~ 86 (313)
T PRK05564 82 IEEVN 86 (313)
T ss_pred HHHHh
Confidence 55443
No 98
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.98 E-value=4.5e-05 Score=59.09 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHhcCC--CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087 46 GLDDRMEELLDLLIEGP--PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE 103 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 103 (157)
++.........++..-. ....-+.++|..|+|||.||.++++ .+...-..+.|+++
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~ 192 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF 192 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH
Confidence 44444444455554311 1345788999999999999999999 44333233455554
No 99
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.98 E-value=0.00015 Score=62.16 Aligned_cols=108 Identities=20% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHH
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKF 119 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~ 119 (157)
+...+-|. +|.+.|... .+.+.+.|..+.|-|||||+..... .. ..-..+.|.+++.. -++..++..++..
T Consensus 18 ~~~~v~R~----rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccH----HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 44555564 444545443 3688999999999999999998865 11 22346889998765 4688999999999
Q ss_pred hCCCCC--Ccc-------cccccHHHHHHHHHHHhc--CCcEEEEeeC
Q 045087 120 LMPSSR--LSE-------IKDKNYEMKKIILHEYLM--TKRYLIVIDD 156 (157)
Q Consensus 120 l~~~~~--~~~-------~~~~~~~~~~~~l~~~L~--~kr~LlVlDd 156 (157)
+..-.+ .+. ....+...+...+..-|. .++++|||||
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDD 137 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDD 137 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecc
Confidence 875221 100 122334455666665553 5689999998
No 100
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.98 E-value=8.7e-05 Score=56.64 Aligned_cols=101 Identities=17% Similarity=0.026 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH-hCCCCCCcc-cc
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF-LMPSSRLSE-IK 130 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~-l~~~~~~~~-~~ 130 (157)
.|-.+|-.+-+...++-|+|+.|.||||+|.+++- ..+..-...+|+..-..+++..+.+ ++.. +.. -...+ ..
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~-l~v~~~~~ 123 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDN-LLVSQPDT 123 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcc-eeEecCCC
Confidence 34444444446778999999999999999988777 4444455789999998888776543 3333 221 11000 12
Q ss_pred cccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 131 DKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 131 ~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
.....+++..+.+....+--|+|+|.|
T Consensus 124 ~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 124 GEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 333345555555555554569999975
No 101
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=6.1e-05 Score=63.80 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999999988653 235678999999999999998877
No 102
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.97 E-value=6e-05 Score=58.58 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc----CeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF----DCHAWVQEPYTCYADQILDIIIKFLMPSSRL- 126 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~- 126 (157)
..+.++|..+-....++-|+|.+|+|||+++..++-.......+ ...+|++....+++..+.+. +..++.+...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g~~~~~~ 167 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALGLDPDEV 167 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcCCChHhh
Confidence 34444454444567799999999999999998886532221111 36889999988888776544 3444332100
Q ss_pred -cc---ccccc---HHHHHHHHHHHhcC--CcEEEEeeCC
Q 045087 127 -SE---IKDKN---YEMKKIILHEYLMT--KRYLIVIDDV 157 (157)
Q Consensus 127 -~~---~~~~~---~~~~~~~l~~~L~~--kr~LlVlDdV 157 (157)
.. ....+ ...++..+...+.. +--|||+|.+
T Consensus 168 l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 168 LDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 00 11111 22345556666653 3459999975
No 103
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=1.5e-05 Score=65.63 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=39.6
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...+++|.+..+..|.+.+..+. -...+.++|.+|+||||+|+.+++.
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999988877653 3457889999999999999999873
No 104
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.97 E-value=2.4e-05 Score=53.95 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=29.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY 108 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 108 (157)
++.|+|.+|+|||+++..+.. .....-...+|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 367899999999999999987 3433345677887766543
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=8.3e-05 Score=58.82 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=39.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-.+++|.+..++.+.+++..+. -.+.+.++|++|+|||++|+.+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999997653 345788999999999999999877
No 106
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=2.9e-05 Score=65.15 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=38.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999887653 234567899999999999999876
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=8.1e-05 Score=61.45 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=38.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++||.+.-++.|.+++..+. -...+.++|++|+||||+|+.+..
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999997653 234567899999999999998877
No 108
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.96 E-value=3.6e-05 Score=66.21 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++||+.+++++...|.... ..-+.++|.+|+|||++|+.++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887743 23446899999999999999887
No 109
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=8.7e-05 Score=56.99 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=30.5
Q ss_pred CccccHHHHHHHHHHHh---c-------C---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLI---E-------G---PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|.+...++|.++.. . + ......+.++|.+|+||||+|+.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56777666665544431 1 0 11234588899999999999999977
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.96 E-value=1.2e-05 Score=61.13 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=41.6
Q ss_pred CCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 41 SRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
-.+|+|.++-.++|.-.+.. .....-.+.++|++|.||||||..+.+ ++...+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 46799999999988777643 234567899999999999999999998 554433
No 111
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=1.8e-05 Score=66.70 Aligned_cols=48 Identities=13% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCCCccccHHHHHHHHHHHhcCC---CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGP---PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.++.+++|..|+.... ....++.++|++|+||||+++.++.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999986532 2345799999999999999999987
No 112
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=9.5e-05 Score=60.64 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=38.5
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+..
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 34678999999999998887653 234788999999999999988865
No 113
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.94 E-value=7.8e-06 Score=54.22 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 114
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.93 E-value=4.1e-05 Score=66.22 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=39.7
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.+++|.+...+.+.+++.. ...+.+++.++|++|+|||++|+.+.+ .+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 4578999999998887642 223446899999999999999999988 444333
No 115
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=8.6e-05 Score=62.46 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=38.6
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999988764 235668899999999999998855
No 116
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.91 E-value=1.6e-05 Score=62.30 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..++.|.+++..+. -...+.++|.+|+||||+|+.+..
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999887653 235678899999999999988866
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=97.91 E-value=4.4e-05 Score=64.53 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCCccccHHHHHHHHHHHh---cC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLI---EG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++.|.++..++|.+.+. .. ....+-+.++|++|+|||+||++++.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3568898888877766652 11 12245688999999999999999988
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.0001 Score=59.02 Aligned_cols=47 Identities=17% Similarity=0.038 Sum_probs=38.4
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..++.|.+++..+. -...+.++|++|+||||+|..+.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999887653 234577899999999999998876
No 119
>PTZ00035 Rad51 protein; Provisional
Probab=97.90 E-value=0.00025 Score=55.73 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccc---c-ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMK---H-YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR- 125 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~- 125 (157)
...|-++|..+-....++.|+|.+|+|||+|+..++-...+. . .=...+|++....++++++ .+++..++....
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~ 182 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPED 182 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHh
Confidence 355656665554667899999999999999998886532211 0 1134569988777777764 444555443211
Q ss_pred ----CcccccccHHHHHHHH---HHHhc-CCcEEEEeeCC
Q 045087 126 ----LSEIKDKNYEMKKIIL---HEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 126 ----~~~~~~~~~~~~~~~l---~~~L~-~kr~LlVlDdV 157 (157)
..-....+.+++...+ ...+. .+--|||+|.+
T Consensus 183 ~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 183 VLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0001223334444333 33343 44569999975
No 120
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.89 E-value=0.00013 Score=54.17 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC------
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR------ 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~------ 125 (157)
..|-++|..+-+...++.|+|.+|+|||++|.++... .++ .=..++|++... ++.+++.++ .+++-...
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g 86 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWG 86 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCC
Confidence 4455555555566789999999999999999888542 222 234677888765 345555553 23321100
Q ss_pred -C------c---ccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 126 -L------S---EIKDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 126 -~------~---~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
. + .....+.++++..+.+.+.. +.-++|+|.+
T Consensus 87 ~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 87 YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 0 0 01123346777777777754 5568899863
No 121
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.89 E-value=0.00017 Score=53.74 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
..|-++|..+-+...++.|.|.+|+|||++|.++... .. ..-..++|++... ++.++++.+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 4455556555567789999999999999999776441 22 2345678888765 555665554
No 122
>PRK09183 transposase/IS protein; Provisional
Probab=97.89 E-value=0.00025 Score=53.68 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+.|+|.+|+|||+||..+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34678999999999999999976
No 123
>PRK07667 uridine kinase; Provisional
Probab=97.88 E-value=3.6e-05 Score=55.67 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.+.+.+........+|+|.|.+|.||||+|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4566666665555668999999999999999999987
No 124
>PRK06526 transposase; Provisional
Probab=97.88 E-value=0.00014 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..-+.++|.+|+|||+||..+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 45689999999999999999977
No 125
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00016 Score=58.72 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 102 (157)
...+.|+|.+|+|||+|++++++ .+.......++++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~ 176 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR 176 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee
Confidence 45788999999999999999998 4433322334444
No 126
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.87 E-value=3.3e-05 Score=66.41 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.6
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+++.|.+..+++|.+++... -...+-+.++|.+|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 45889999999998877421 12245688999999999999999988
No 127
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.87 E-value=0.00014 Score=55.79 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+.++|.+|+|||++|+.+.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999977765
No 128
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=5.6e-05 Score=63.18 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-.+++|++..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999887653 235678999999999999998876
No 129
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.87 E-value=0.00012 Score=58.14 Aligned_cols=99 Identities=22% Similarity=0.150 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI 129 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~ 129 (157)
+.+|-+.|..+-....++.|.|.+|+|||||+.+++. .....-...+|++... +..++.. -+..++...+ ..-.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~ 142 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLL 142 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEE
Confidence 3556565655445567999999999999999998876 3333334567777644 3334322 2344443211 0001
Q ss_pred ccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
...+.+++.+.+.+ .+.-+||+|.+
T Consensus 143 ~e~~le~I~~~i~~---~~~~lVVIDSI 167 (372)
T cd01121 143 AETNLEDILASIEE---LKPDLVIIDSI 167 (372)
T ss_pred ccCcHHHHHHHHHh---cCCcEEEEcch
Confidence 23344555554432 46678999974
No 130
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.85 E-value=3.1e-05 Score=55.40 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=24.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 102 (157)
..-+.++|.+|+|||.||.++.+ +...+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee
Confidence 45689999999999999999987 3333222345554
No 131
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=3.3e-05 Score=64.79 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=40.0
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 44679999999999999987653 2446788999999999999998773
No 132
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.84 E-value=9.9e-05 Score=63.40 Aligned_cols=99 Identities=20% Similarity=0.081 Sum_probs=63.5
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~ 129 (157)
..|-.+|. .+-....++-|+|.+|+||||||..++. .....-..++|+.....++.. .+..++.+.. .--.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~ 118 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVS 118 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEe
Confidence 55556665 3445678999999999999999977655 222333567899887777743 4555554321 0002
Q ss_pred ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
...+.++.+..+...++ ++--|||+|.|
T Consensus 119 ~~~~~E~~l~~i~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 119 QPDTGEQALEIADMLIRSGALDIVVIDSV 147 (790)
T ss_pred cCCCHHHHHHHHHHHhhcCCCeEEEEcch
Confidence 23344666667777664 45678999975
No 133
>PRK08233 hypothetical protein; Provisional
Probab=97.83 E-value=0.00012 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.82 E-value=7.5e-05 Score=64.23 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=37.0
Q ss_pred CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.|.+.+... ......+.++|++|+|||+||+.+++
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 57899999999998887631 11234678999999999999999988
No 135
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=3.9e-05 Score=59.36 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=47.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccc--cccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMK--HYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH 142 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 142 (157)
-++|.+.|+||.|||+|+++++++..++ ++|....-+.+.. ..++.++... ...-...+.+.|.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE----------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE----------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh----------hhhHHHHHHHHHH
Confidence 4789999999999999999999965544 3444444443322 2333333321 1233455666666
Q ss_pred HHhcCCcE--EEEeeCC
Q 045087 143 EYLMTKRY--LIVIDDV 157 (157)
Q Consensus 143 ~~L~~kr~--LlVlDdV 157 (157)
+.+.++.+ ++.+|.|
T Consensus 243 ELv~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEV 259 (423)
T ss_pred HHHhCCCcEEEEEeHHH
Confidence 66666553 4445544
No 136
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.80 E-value=0.00014 Score=52.85 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=31.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHHhC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKFLM 121 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~l~ 121 (157)
+++.++|+.|+||||.+-+++.. .+..-.....++.... ....+-++..++.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 68999999999999888777663 2222223445554322 223344444455444
No 137
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0002 Score=57.34 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=38.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCC--------CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPP--------QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++++|.+..++.|.+.+..+.. -.+-+.++|++|+|||++|+.+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999976531 245688999999999999998865
No 138
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00017 Score=61.01 Aligned_cols=47 Identities=21% Similarity=0.175 Sum_probs=38.8
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+.-++.|.+.+..+. -...+.++|..|+||||+|+.+..
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999887654 234467899999999999999977
No 139
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.79 E-value=0.00025 Score=51.23 Aligned_cols=81 Identities=10% Similarity=-0.034 Sum_probs=44.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccc-cC---eeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMKHY-FD---CHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH 142 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 142 (157)
+|+|.|.+|+||||+|+.+.. .+... +. ....++.............- ...............+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDRK-GRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHHH-HHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhHh-hccccccCCCCccccCHHHHHHHHH
Confidence 689999999999999999987 44432 22 13333433322222222221 1111111111134567777777777
Q ss_pred HHhcCCcE
Q 045087 143 EYLMTKRY 150 (157)
Q Consensus 143 ~~L~~kr~ 150 (157)
...+++.+
T Consensus 78 ~L~~g~~i 85 (194)
T PF00485_consen 78 ALKNGGSI 85 (194)
T ss_dssp HHHTTSCE
T ss_pred HHhCCCcc
Confidence 76666654
No 140
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.79 E-value=0.00014 Score=54.98 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=30.7
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 61 GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
+-....++.|+|.+|+|||++|.++... ..+ .=..++|++...
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~-~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVT-QAS-RGNPVLFVTVES 74 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHH-HHh-CCCcEEEEEecC
Confidence 3355679999999999999999876552 222 234677888764
No 141
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.77 E-value=0.00013 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678899999999999988876
No 142
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00029 Score=59.02 Aligned_cols=46 Identities=24% Similarity=0.111 Sum_probs=38.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999997753 234567899999999999999877
No 143
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.76 E-value=0.00036 Score=53.21 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++.++|.+|+||||++..++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999999988876
No 144
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00017 Score=54.46 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=29.4
Q ss_pred ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
++...+..+......=. +..-+.++|.+|+|||.||.++.+.
T Consensus 87 ~~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~ 128 (254)
T COG1484 87 IDKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNE 128 (254)
T ss_pred hhHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHH
Confidence 34555555544442211 4557889999999999999999994
No 145
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.74 E-value=0.00011 Score=57.20 Aligned_cols=99 Identities=18% Similarity=0.082 Sum_probs=59.1
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc-c
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE-I 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~-~ 129 (157)
..|-..|- .+-+..+++-|+|..|+||||||..+.. ..++.-..++|+.....+++.. +..++.+.+.-- .
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~ 111 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVV 111 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEe
Confidence 44544454 2335567999999999999999988877 5555556788999888776543 344443221000 1
Q ss_pred ccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
...+.++.++.+...++. ..-++|+|.|
T Consensus 112 ~P~~~E~al~~~e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 112 QPDTGEQALWIAEQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp E-SSHHHHHHHHHHHHHTTSESEEEEE-C
T ss_pred cCCcHHHHHHHHHHHhhcccccEEEEecC
Confidence 223456667777776654 4468999975
No 146
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.74 E-value=0.00022 Score=54.59 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=46.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH 142 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 142 (157)
+..+++++|.+|+||||++..+......+..-..++.++..... ...+-+......++.+.. ...+..++...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHHH
Confidence 45699999999999999998887732222111234455543321 223333333443333221 2234455555555
Q ss_pred HHhcCCcEEEEeeC
Q 045087 143 EYLMTKRYLIVIDD 156 (157)
Q Consensus 143 ~~L~~kr~LlVlDd 156 (157)
. +.+ .=+|++|.
T Consensus 269 ~-~~~-~d~vliDt 280 (282)
T TIGR03499 269 R-LRD-KDLILIDT 280 (282)
T ss_pred H-ccC-CCEEEEeC
Confidence 4 343 34777775
No 147
>PRK06921 hypothetical protein; Provisional
Probab=97.74 E-value=0.0002 Score=54.38 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=28.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQE 103 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 103 (157)
...+.++|.+|+|||+||.++++ .+... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 46789999999999999999998 44443 334566664
No 148
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.74 E-value=0.00037 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+..+++|.|.+|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998877
No 149
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.74 E-value=0.00058 Score=50.41 Aligned_cols=101 Identities=20% Similarity=0.103 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC-------
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS------- 124 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~------- 124 (157)
..|-++|..+-.....+.|.|.+|.|||++|..+... ..+ .-...+|++...+ ..++... +.+++...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~ 81 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEG 81 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcC
Confidence 3454555444456679999999999999999876542 122 2346778876443 3444333 22222110
Q ss_pred CC-------------cccccccHHHHHHHHHHHhcC---CcEEEEeeCC
Q 045087 125 RL-------------SEIKDKNYEMKKIILHEYLMT---KRYLIVIDDV 157 (157)
Q Consensus 125 ~~-------------~~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdV 157 (157)
.. ......+.+++...+++.++. +.-++|+|.+
T Consensus 82 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl 130 (229)
T TIGR03881 82 KLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSM 130 (229)
T ss_pred CEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCc
Confidence 00 001123566777777776643 3457888864
No 150
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00027 Score=59.65 Aligned_cols=47 Identities=15% Similarity=-0.008 Sum_probs=38.2
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999887653 234578999999999999988866
No 151
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.72 E-value=0.00041 Score=56.46 Aligned_cols=99 Identities=24% Similarity=0.149 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI 129 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~ 129 (157)
+..|-+.|..+-....++.|.|.+|+|||||+.++... ....-...+|++... +..++... +..++...+ ..-.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEe
Confidence 45666666555455679999999999999999888773 322223567777654 33444332 344443211 0001
Q ss_pred ccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
...+.+++.+.+.+ .+.-++|+|.+
T Consensus 141 ~e~~l~~i~~~i~~---~~~~lVVIDSI 165 (446)
T PRK11823 141 AETNLEAILATIEE---EKPDLVVIDSI 165 (446)
T ss_pred CCCCHHHHHHHHHh---hCCCEEEEech
Confidence 22344555555433 35568999974
No 152
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0003 Score=59.57 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=45.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC--CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC--YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIIL 141 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l 141 (157)
..+.|.|.|..|+|||+||+++++... +++.....+++++... +.+.+ ...+...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~i---------------------Qk~l~~vf 487 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKI---------------------QKFLNNVF 487 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHH---------------------HHHHHHHH
Confidence 456789999999999999999998432 3333344455554421 11111 12333445
Q ss_pred HHHhcCCcEEEEeeCC
Q 045087 142 HEYLMTKRYLIVIDDV 157 (157)
Q Consensus 142 ~~~L~~kr~LlVlDdV 157 (157)
...+...+-++||||+
T Consensus 488 se~~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 488 SEALWYAPSIIVLDDL 503 (952)
T ss_pred HHHHhhCCcEEEEcch
Confidence 5556678888999886
No 153
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4.3e-05 Score=64.35 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=42.9
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.+=+|.++-.+++.+.|.- +.-+.+++++||++|+|||+|++.+++ .....|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 4568999999999998853 344568999999999999999999998 665555
No 154
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00026 Score=53.47 Aligned_cols=90 Identities=9% Similarity=-0.005 Sum_probs=51.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-----CCCHHHHHHHHHHHhCCCCCCcc---cccccHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-----TCYADQILDIIIKFLMPSSRLSE---IKDKNYE 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~l~~i~~~l~~~~~~~~---~~~~~~~ 135 (157)
+..+++++|.+|+|||||++.+.. -. +.-.+.+++.-.+ .....+....++..++.....-. ..-..-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LE-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--Cc-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 456999999999999999999988 22 2223344433111 12233455666666654321100 1112222
Q ss_pred HHHHHHHHHhcCCcEEEEeeC
Q 045087 136 MKKIILHEYLMTKRYLIVIDD 156 (157)
Q Consensus 136 ~~~~~l~~~L~~kr~LlVlDd 156 (157)
.-.-.+.+.|.-+.-|+|+|+
T Consensus 115 rQRi~IARALal~P~liV~DE 135 (268)
T COG4608 115 RQRIGIARALALNPKLIVADE 135 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecC
Confidence 223345666777778888875
No 155
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.71 E-value=0.00023 Score=61.60 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.+|.+.-.+++.++|.. +.....++.++|++|+||||+|+.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988863 223456899999999999999999987
No 156
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.71 E-value=0.00016 Score=53.77 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=46.3
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc-cc-CeeEEEEcCCCCCHHH
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YF-DCHAWVQEPYTCYADQ 111 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F-~~~~wv~~~~~~~~~~ 111 (157)
.-.++||.++-++.|.-....+ +.+.+.|.||+|+||||-+..+.+ ++-. .+ +...-.+.++....+-
T Consensus 25 ~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr--~LLG~~~ke~vLELNASdeRGIDv 94 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAR--ELLGDSYKEAVLELNASDERGIDV 94 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHH--HHhChhhhhHhhhccCccccccHH
Confidence 3467999999999987665554 578899999999999998877777 3322 12 3333444454444433
No 157
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.71 E-value=0.00029 Score=57.94 Aligned_cols=103 Identities=14% Similarity=-0.028 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC---
Q 045087 50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL--- 126 (157)
Q Consensus 50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~--- 126 (157)
.+..|-++|..+-....++.|.|.+|+|||||+.++.. .....-..+++++... +..++...+ ..++-+...
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhh
Confidence 34667777766656778999999999999999988766 3323334567777655 455655554 444421100
Q ss_pred -c-------ccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 127 -S-------EIKDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 127 -~-------~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
. .......++.+..+.+.+.. +.-++|+|.+
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0 00122346677777777654 4457888864
No 158
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.70 E-value=9.9e-05 Score=54.46 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=30.9
Q ss_pred CCcc-cc-HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTV-GL-DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~v-Gr-~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|+ |. +..+..+.++... ......+.|+|.+|+|||+||..+++
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred cccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4444 44 3444555555442 23356788999999999999999988
No 159
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.70 E-value=0.00018 Score=61.96 Aligned_cols=47 Identities=23% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++.|.+...++|.+.+.. +-...+-+.++|++|+|||+||+++.+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45678888888888777642 112234578899999999999999998
No 160
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.70 E-value=0.00019 Score=57.71 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=38.6
Q ss_pred CCccccHHHHHHHHHHHhcC------------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
..++|.++.+..+...+... +...+.+.++|++|+|||++|+.+.. .+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 56888888888886665531 12246788999999999999999988 444444
No 161
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.70 E-value=0.00011 Score=58.10 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=25.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY 94 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 94 (157)
.....++|||++|+|||.+|++++. +..-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCC
Confidence 3467899999999999999999999 44443
No 162
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.69 E-value=3.7e-05 Score=53.81 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..-+.|+|++|+||||++..+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 45689999999999999999987
No 163
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.69 E-value=5.7e-05 Score=62.76 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=39.2
Q ss_pred CCccccHHHHHHHHHHHh----cCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLI----EGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++|.++.++++.+.|. .-+.+.+++.++|++|+|||+||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 368999999999999882 2234568999999999999999999987
No 164
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.68 E-value=0.00016 Score=58.17 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=37.2
Q ss_pred CCCccccHHHHHHHHHHHhcC------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|.+..++.+..++... +.....+.++|++|+|||+||+.+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999988777541 11236789999999999999999987
No 165
>PRK04040 adenylate kinase; Provisional
Probab=97.68 E-value=0.00014 Score=52.40 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 166
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=9.7e-05 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH 93 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 93 (157)
+..+|+|.|.+|.||||+|+.++. .++.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCc
Confidence 457999999999999999999988 4443
No 167
>PF14516 AAA_35: AAA-like domain
Probab=97.68 E-value=0.0012 Score=51.68 Aligned_cols=114 Identities=14% Similarity=0.092 Sum_probs=68.7
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-----CCCHHHHH
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-----TCYADQIL 113 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~l 113 (157)
.+.+..|.|...-+++.+.|... ...+.|.|+..+|||+|...+.+ ..++.=...+++++.. ..+.++++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 34455678885566666666542 24899999999999999999988 4433222455676543 13566666
Q ss_pred HHHHHHhCCCCCC----cc-c--ccccHHHHHHHHHHHh---cCCcEEEEeeCC
Q 045087 114 DIIIKFLMPSSRL----SE-I--KDKNYEMKKIILHEYL---MTKRYLIVIDDV 157 (157)
Q Consensus 114 ~~i~~~l~~~~~~----~~-~--~~~~~~~~~~~l~~~L---~~kr~LlVlDdV 157 (157)
+.++..+...-.. .. + ...+.......+.+++ .+++.+|+||+|
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEi 136 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEI 136 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEech
Confidence 6666555432211 10 0 1123334445555543 268899999986
No 168
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.68 E-value=0.00042 Score=56.49 Aligned_cols=102 Identities=19% Similarity=0.086 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-C
Q 045087 48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-L 126 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~ 126 (157)
..-+..|-++|..+-....++.|.|.+|+|||||+..+... ....-...+|++... +..++... +..++.... .
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l 151 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNL 151 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHe
Confidence 33456666666555556789999999999999999888662 222223467777554 33443322 233332111 0
Q ss_pred cccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 127 SEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
.-....+.+++...+.+ .+.-++|+|.+
T Consensus 152 ~~~~e~~~~~I~~~i~~---~~~~~vVIDSI 179 (454)
T TIGR00416 152 YVLSETNWEQICANIEE---ENPQACVIDSI 179 (454)
T ss_pred EEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence 00223344555555433 35568999964
No 169
>PTZ00301 uridine kinase; Provisional
Probab=97.67 E-value=0.00011 Score=53.97 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|+|.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57899999999999999988866
No 170
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00029 Score=59.10 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKH 93 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 93 (157)
...+.|+|..|+|||.|++++++ ....
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~ 340 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARR 340 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHH
Confidence 34589999999999999999999 4443
No 171
>PRK10867 signal recognition particle protein; Provisional
Probab=97.67 E-value=0.0005 Score=55.67 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.++|.+|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999998776655
No 172
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.65 E-value=0.00032 Score=51.81 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+++|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 479999999999999999887
No 173
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.65 E-value=0.00068 Score=55.01 Aligned_cols=57 Identities=18% Similarity=0.031 Sum_probs=34.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMP 122 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~ 122 (157)
...++.++|.+|+||||+|..++. .+...-...+.+++.. .....+-+..++.+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 467899999999999999998887 3433211223333322 11234445555655543
No 174
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.65 E-value=0.00019 Score=54.18 Aligned_cols=58 Identities=22% Similarity=0.179 Sum_probs=42.8
Q ss_pred HHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087 56 DLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 56 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
+.|..+-+..+++.|+|.+|+|||+++.++.. +...+...++|++...+ ..+++..+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 33434446678999999999999999988877 55556888999998774 445555543
No 175
>PRK05642 DNA replication initiation factor; Validated
Probab=97.64 E-value=0.00037 Score=51.94 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=27.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP 104 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 104 (157)
...+.|+|.+|+|||.|++++++ .....-..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHH
Confidence 35789999999999999999987 333322345666653
No 176
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.63 E-value=0.00056 Score=55.34 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++.++|.+|+||||+|..++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 57899999999999999877766
No 177
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.62 E-value=0.00015 Score=63.13 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.|.+.+... ......+.++|++|+|||+||+.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 67899999999998877521 11234567899999999999999877
No 178
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.62 E-value=9.9e-05 Score=62.29 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
..+.++|++..+..+.+.+.... ...+.|+|.+|+||||||+.+++..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999888775433 4579999999999999999998743
No 179
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00083 Score=55.27 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=38.2
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+.-++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997753 234567899999999999998866
No 180
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.61 E-value=0.00027 Score=55.33 Aligned_cols=36 Identities=8% Similarity=-0.009 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE 103 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 103 (157)
.-+.++|.+|+|||+||.++++ .+-..-..++|++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH
Confidence 6799999999999999999988 44333234555553
No 181
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.60 E-value=0.00026 Score=59.97 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=41.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMP 122 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~ 122 (157)
+.-+++.++|++|+||||||..++++. -| .++-++.++..+...+-..|...+..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQN 378 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhh
Confidence 356899999999999999999998832 22 35567778877777777777666654
No 182
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.59 E-value=5.4e-05 Score=50.36 Aligned_cols=20 Identities=30% Similarity=0.234 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|.|.|.+|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988
No 183
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.59 E-value=0.00034 Score=56.57 Aligned_cols=90 Identities=9% Similarity=0.063 Sum_probs=53.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|+|..|+|||||+..+... . ..+..++..++.... ..+++..++..-...... ...+....+
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 3468999999999999999999872 2 224666666766543 456666654432111100 001111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222344444 689999999985
No 184
>PRK04296 thymidine kinase; Provisional
Probab=97.59 E-value=0.00011 Score=52.98 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|+|..|.||||+|..+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH
Confidence 4678899999999999987776
No 185
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.58 E-value=0.00054 Score=55.58 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=48.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC--CCcccccccHH-----H
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS--RLSEIKDKNYE-----M 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~--~~~~~~~~~~~-----~ 136 (157)
....++|+|.+|+|||||+..+.... ....+.+++.--+..+..++....+....... -..+.+..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34589999999999999999887632 12223333332234455555554444331100 00001111111 1
Q ss_pred HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 ~~~~l~~~L--~~kr~LlVlDdV 157 (157)
..-.+.+++ +++.+||++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222344444 588999999985
No 186
>PRK04328 hypothetical protein; Provisional
Probab=97.58 E-value=0.00065 Score=51.07 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
..|-++|..+-+...++.|.|.+|.|||+||.++... .+ ..-..++|++...
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis~ee 61 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVALEE 61 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEEeeC
Confidence 3455555555456779999999999999999776542 22 2245678888766
No 187
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.58 E-value=0.00042 Score=56.11 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=52.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|+|..|+|||||++.+++.. . .+..++..++... ...+++...+..-+..... ...+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~--~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA--D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc--C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 45688999999999999999998732 2 2345566666544 3456665554432211000 001111112
Q ss_pred -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 2222344444 588999999986
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.58 E-value=0.0001 Score=60.14 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=37.3
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|+++.++.+...+..+. .+.++|.+|+|||+||+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 578999999999988887754 688999999999999999987
No 189
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.57 E-value=0.00054 Score=59.98 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=36.4
Q ss_pred CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.|.+.+... ......+.++|++|+|||+||+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46889999999988887531 11224788999999999999999987
No 190
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.56 E-value=0.00032 Score=59.13 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=53.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
.++++|.++.++.+...+.... .+.++|++|+||||+|+.+.+ .+... |...+++.-+ ..+..+++..++..
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNP-EDPNMPRIVEVPAG 89 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCC-CCCchHHHHHHHHh
Confidence 4678999998888887776642 566999999999999999988 44433 3444444333 23566778888877
Q ss_pred hCC
Q 045087 120 LMP 122 (157)
Q Consensus 120 l~~ 122 (157)
++.
T Consensus 90 ~g~ 92 (608)
T TIGR00764 90 EGR 92 (608)
T ss_pred hch
Confidence 764
No 191
>PRK05439 pantothenate kinase; Provisional
Probab=97.55 E-value=0.00097 Score=51.76 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999998876
No 192
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00095 Score=51.44 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=36.3
Q ss_pred CccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|.+..+.++..+..........+.++|++|+||||+|..+.+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~ 46 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK 46 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH
Confidence 467888888999998875442333599999999999999998877
No 193
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0013 Score=49.17 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=39.7
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.-..++|.+.+.+.|.+--.. .......|.+||..|.|||+|.+++++ ++.+..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~g 113 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEG 113 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcC
Confidence 335789999999888654321 222455788999999999999999988 555544
No 194
>PRK05973 replicative DNA helicase; Provisional
Probab=97.54 E-value=0.00097 Score=49.83 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=34.3
Q ss_pred cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 60 EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 60 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
.+-....++.|.|.+|+|||++|..+... .-..-..++|++...+ ..++...+
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHH
Confidence 33345568999999999999999877652 2222345667766553 45555554
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.54 E-value=0.00053 Score=48.57 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|....+.++.+.+..-......|.|+|..|+||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47778888888887754222335677999999999999999998
No 196
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.00082 Score=58.47 Aligned_cols=47 Identities=23% Similarity=0.120 Sum_probs=38.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999987653 2345789999999999999988763
No 197
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.53 E-value=0.00015 Score=53.40 Aligned_cols=100 Identities=21% Similarity=0.162 Sum_probs=58.2
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC---------
Q 045087 54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS--------- 124 (157)
Q Consensus 54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~--------- 124 (157)
|-++|..+-+...++.|.|.+|+|||+++.++... ..++.=+.++|++...+ ..++++.+. .++-+-
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l 83 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKL 83 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCE
Confidence 44455444456679999999999999999775541 22221345778887654 355555533 332110
Q ss_pred ----CCcccc---cccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 125 ----RLSEIK---DKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 125 ----~~~~~~---~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
..+... ..+.+.+...+.+.++. +...+|+|.+
T Consensus 84 ~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 84 KIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp EEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred EEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 000000 34677788888887754 3478899863
No 198
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.53 E-value=0.00078 Score=59.00 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=37.2
Q ss_pred CCccccHHHHHHHHHHHhcC------C-CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG------P-PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.+.+.+... . .....+.++|++|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999998888642 1 1235678999999999999999987
No 199
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.52 E-value=0.0016 Score=48.39 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=34.0
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087 61 GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
+-....++.|.|.+|+|||+++..+..+ -...+=...+|+++.. +..++...++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~-~~~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAEN-IAKKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHhCCCceEEEeCCC--CHHHHHHHHH
Confidence 3344568999999999999999877653 2222123566777544 3344444443
No 200
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00021 Score=61.63 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=37.1
Q ss_pred CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.++.++.|.+.+... ......+.++|++|+|||++|+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998888631 12245688999999999999999987
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=97.52 E-value=0.00076 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..++.++|++|+||||++..+++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999998887776
No 202
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00054 Score=54.42 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..++.++|+.|+||||++.++..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998877
No 203
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.51 E-value=0.00034 Score=57.46 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCCccccHHHHHHHHHHHhc--------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIE--------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++.|.+...+.|...... +-...+-+.++|++|+|||.+|+++.+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 35677877666665543211 112346788999999999999999988
No 204
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00018 Score=56.33 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=37.6
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+=|.++++++|.+.+.-. =...+=|.+||++|.|||-||++|+++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45677899999998887421 134567889999999999999999994
No 205
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.0011 Score=55.63 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=38.7
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+.-++.|.+.+..+. -...+.++|..|+||||+|+.+..
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999987653 234567899999999999998876
No 206
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.50 E-value=0.0014 Score=46.89 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.+.+..+. -...+.++|..|+|||++|+.+..
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555555442 235788999999999999988866
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.50 E-value=0.00027 Score=61.73 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=36.8
Q ss_pred CCccccHHHHHHHHHHHhc-------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIE-------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.+.+.+.. ......++.++|++|+|||.||+.+.+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999888743 112345788999999999999998876
No 208
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.001 Score=56.06 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=38.3
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+...
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4578999988888888887653 2457778999999999999988773
No 209
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0013 Score=55.12 Aligned_cols=47 Identities=19% Similarity=0.063 Sum_probs=39.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+...
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999997753 3456789999999999999998773
No 210
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.49 E-value=0.00024 Score=54.21 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..|.+.+... .+.+.++|..|+|||++++...+
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhc
Confidence 4455555553 35778999999999999998876
No 211
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0017 Score=55.48 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=63.5
Q ss_pred CCCCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC 107 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 107 (157)
....+++=|.++-..+|.+-+.- +-.+..=|.+||++|.|||-||++|+. +.. --|+++..+
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--Ecs-----L~FlSVKGP- 739 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECS-----LNFLSVKGP- 739 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hce-----eeEEeecCH-
Confidence 34456788889888888876632 223356788999999999999999988 221 235666554
Q ss_pred CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 108 YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 108 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
++++. . -..+++.+.+.+.+.=+.++|.|.+|++
T Consensus 740 ---ELLNM---Y----------VGqSE~NVR~VFerAR~A~PCVIFFDEL 773 (953)
T KOG0736|consen 740 ---ELLNM---Y----------VGQSEENVREVFERARSAAPCVIFFDEL 773 (953)
T ss_pred ---HHHHH---H----------hcchHHHHHHHHHHhhccCCeEEEeccc
Confidence 12211 1 2223455666666666778899999974
No 212
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=0.00011 Score=49.90 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999885
No 213
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.48 E-value=0.00011 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 214
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.47 E-value=0.0013 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.9
Q ss_pred ceEEEEEeCCCCcHH-HHHHHHhc
Q 045087 65 LSAVTILDSIGLDKT-AFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKT-tLa~~v~~ 87 (157)
.+++.++|+.|+||| |||+..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999 56665554
No 215
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0003 Score=59.51 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=43.1
Q ss_pred CCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
++=+|.++-.+++.+.+.- +..+.++++.+|++|+|||++|+.+++ .+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 5678999999999999853 456678999999999999999999988 554444
No 216
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.47 E-value=0.00045 Score=56.25 Aligned_cols=93 Identities=11% Similarity=0.142 Sum_probs=57.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccH-----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNY----- 134 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~----- 134 (157)
+...++|.|.+|+|||||+..+.+.... .+-+.++++.++... ...+++..+...-...... ...+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4568999999999999999888774222 245677888877654 4567777766432211100 00111111
Q ss_pred HHHHHHHHHHh---cCCcEEEEeeCC
Q 045087 135 EMKKIILHEYL---MTKRYLIVIDDV 157 (157)
Q Consensus 135 ~~~~~~l~~~L---~~kr~LlVlDdV 157 (157)
....-.+.+++ .++.+||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 22334455666 378999999985
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.47 E-value=0.00031 Score=47.69 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=29.9
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087 68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI 115 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~ 115 (157)
|.++|.+|+|||+||+.+++ .... ...-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceee
Confidence 67899999999999999988 3321 2233566777777766543
No 218
>PRK15453 phosphoribulokinase; Provisional
Probab=97.46 E-value=0.0014 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 219
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.45 E-value=0.00057 Score=53.67 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
+.+.|++|.||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57889999999999999887
No 220
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.45 E-value=0.00031 Score=50.20 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|.+|+||||||..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999887
No 221
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.44 E-value=0.00016 Score=60.01 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=37.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++++|.+..++.|...+.... ...+.|+|.+|+|||++|+.+++
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999988775543 45678999999999999999976
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.44 E-value=0.0014 Score=55.35 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=76.1
Q ss_pred CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCcc---cccccC--eeEEEEcCCCCCHHH
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNY---MKHYFD--CHAWVQEPYTCYADQ 111 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~--~~~wv~~~~~~~~~~ 111 (157)
.+..+-+|+.+..+|...+.. +......+.|.|-+|.|||..+..|....+ -++.-. +.+.++--.-..+.+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 567788999999999988853 222345899999999999999999987322 111222 234444445567999
Q ss_pred HHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc-----CCcEEEEeeCC
Q 045087 112 ILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM-----TKRYLIVIDDV 157 (157)
Q Consensus 112 ~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdV 157 (157)
++..|+.++.+... .-..-++.|..++. .+.++|++|++
T Consensus 474 ~Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDEl 517 (767)
T KOG1514|consen 474 IYEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDEL 517 (767)
T ss_pred HHHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccH
Confidence 99999999987543 22344555555553 34588888874
No 223
>PRK08149 ATP synthase SpaL; Validated
Probab=97.44 E-value=0.00077 Score=54.44 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=51.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccH-----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNY----- 134 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~----- 134 (157)
+...++|+|.+|+|||||+..++.... -+..++..+.. .....++....+......... ...+....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346899999999999999999987321 22333333433 335566666666543211000 00111111
Q ss_pred HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087 135 EMKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 135 ~~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
......+.+++ ++|.+||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 12233344444 589999999985
No 224
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.44 E-value=0.00053 Score=48.53 Aligned_cols=24 Identities=21% Similarity=0.057 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.|+|++|+||||+|+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999887
No 225
>PRK06762 hypothetical protein; Provisional
Probab=97.44 E-value=0.00012 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999998877
No 226
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.002 Score=53.90 Aligned_cols=47 Identities=21% Similarity=0.150 Sum_probs=38.9
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..++.|.+++..+. -.+.+.++|..|+|||++|+.+..
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998754 245567899999999999998866
No 227
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.43 E-value=0.0003 Score=47.92 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
.++.+++.+.|...-....++.+.|.-|.||||+++.+.+..
T Consensus 5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345566666665433345689999999999999999998843
No 228
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.42 E-value=0.00073 Score=51.48 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=56.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccc--ccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH--
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYM--KHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE-- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~-- 135 (157)
+-..++|.|-.|+|||+|+..+.++..+ +.+-+.++++.+++.. ...++++.+...=...... ...+.....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999888774321 1234678888888765 4566777665532111100 001111212
Q ss_pred ---HHHHHHHHHhc---CCcEEEEeeCC
Q 045087 136 ---MKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 136 ---~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
.....+.++++ ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 12333555553 68899999995
No 229
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00099 Score=53.40 Aligned_cols=38 Identities=16% Similarity=0.013 Sum_probs=29.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 102 (157)
.....+.|||..|.|||.|++++.+ ....+......+.
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y 148 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVY 148 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEe
Confidence 3577999999999999999999999 6666654333333
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.42 E-value=0.00066 Score=51.40 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHH
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQIL 113 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l 113 (157)
++.+..++..+ ..+.++|.+|+|||+||+.+.. .... ...++++....+..+++
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 34444444443 3667899999999999999986 3322 23445555555544444
No 231
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.001 Score=51.30 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=38.4
Q ss_pred CCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++-|.+...+.|.+.+.- .....+-|.++|++|.||+.||++|..
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 36788999999999887532 123478899999999999999999998
No 232
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00093 Score=53.35 Aligned_cols=99 Identities=22% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccc
Q 045087 50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSE 128 (157)
Q Consensus 50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~ 128 (157)
...+|.+.|-.+--...++.|-|-+|+|||||..++.. ++.+.- ...||+-.. +..++ +--+..|+.+.+ .--
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l 151 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYL 151 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEE
Confidence 34666665655445567999999999999999998888 454443 566666444 33332 223345553221 111
Q ss_pred cccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 129 IKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 129 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
....+.+++.+.+.+ .+.-|+|+|.+
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSI 177 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSI 177 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEecc
Confidence 345666666666665 67889999975
No 233
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.41 E-value=0.00014 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 234
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.41 E-value=0.0012 Score=54.80 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=41.0
Q ss_pred CCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
......++|....++++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 345578999999999998887643333456789999999999999999883
No 235
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0021 Score=53.37 Aligned_cols=47 Identities=17% Similarity=0.000 Sum_probs=38.3
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-.+++|.+..++.|...+..+. -...+.++|..|+||||+|+.+..
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 34678999999999999987653 334568899999999999998766
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.40 E-value=0.00067 Score=51.37 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=39.2
Q ss_pred CCCCccccHHHHHH---HHHHHhcC----CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 40 KSRDTVGLDDRMEE---LLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 40 ~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.-++++|.+....+ |.+.|.+. ....+-|..+|++|.|||.+|+++.+ +.+..|
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~ 179 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPL 179 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCce
Confidence 34678998887765 34444432 34567899999999999999999999 444433
No 237
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.40 E-value=0.00089 Score=54.17 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=51.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHHhCCCCCC---cccccccHHHH--
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPSSRL---SEIKDKNYEMK-- 137 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~-- 137 (157)
+...++|.|..|+|||||++.+... . +.+..++..++.. ....+++.+....=...... ...+....+.+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA--P--DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC--C--CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 3568999999999999999988873 2 2344556555543 34556666553211000000 00111122222
Q ss_pred ---HHHHHHHh--cCCcEEEEeeCC
Q 045087 138 ---KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 138 ---~~~l~~~L--~~kr~LlVlDdV 157 (157)
.-.+.+++ +++++||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 22244454 588999999985
No 238
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.40 E-value=0.00092 Score=54.11 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=52.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM--- 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~--- 136 (157)
+...++|.|..|+|||||...+++.. . -+.+++..++... ...+++...+..-+..... ...+......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~--~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA--E--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC--C--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 45689999999999999999998832 2 2466777776654 4555555543321111000 0011111121
Q ss_pred --HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 --KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 --~~~~l~~~L--~~kr~LlVlDdV 157 (157)
..-.+.+++ +++.+||++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 122344444 589999999985
No 239
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.40 E-value=0.00016 Score=48.93 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcccccccC
Q 045087 68 VTILDSIGLDKTAFAAEAYSSNYMKHYFD 96 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 96 (157)
+.|+|.+|+|||++|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 6666664
No 240
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.40 E-value=0.0014 Score=48.74 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
+...++.|.|.+|+||||+|.+++.. -.+.. ...++++... +..+++..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 44569999999999999998655442 22222 3456666433 556666665
No 241
>PRK03839 putative kinase; Provisional
Probab=97.39 E-value=0.00013 Score=51.97 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 242
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00027 Score=60.55 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-..++||+++++++++.|.....+-++ ++|.+|+|||+++.-++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHH
Confidence 367899999999999999876544444 579999999999877766
No 243
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.39 E-value=0.00023 Score=49.76 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=47.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE-------cCC--CCCHHH---HH---HHHHHHhCCCCCCcc-
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ-------EPY--TCYADQ---IL---DIIIKFLMPSSRLSE- 128 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------~~~--~~~~~~---~l---~~i~~~l~~~~~~~~- 128 (157)
..+|-++|.+|.||||||+++.+ ++...-....++. ++. .++.++ -+ ..++..+..+....-
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIv 79 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIV 79 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 35788999999999999999998 6655544455553 222 234322 22 222222222211000
Q ss_pred cccccHHHHHHHHHHHhcCCcEEEEe
Q 045087 129 IKDKNYEMKKIILHEYLMTKRYLIVI 154 (157)
Q Consensus 129 ~~~~~~~~~~~~l~~~L~~kr~LlVl 154 (157)
....+..+..+..++.+...+|+-|.
T Consensus 80 a~isp~~~~R~~~R~~~~~~~f~eVy 105 (156)
T PF01583_consen 80 AFISPYREDREWARELIPNERFIEVY 105 (156)
T ss_dssp E----SHHHHHHHHHHHHTTEEEEEE
T ss_pred eeccCchHHHHHHHHhCCcCceEEEE
Confidence 11233466777777777766777664
No 244
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.002 Score=54.58 Aligned_cols=47 Identities=23% Similarity=0.136 Sum_probs=39.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.++..
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 4578999999999999987753 2356788999999999999999773
No 245
>PHA02244 ATPase-like protein
Probab=97.39 E-value=0.00036 Score=55.21 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=29.3
Q ss_pred CCCccccHHHHH----HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRME----ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~----~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..++|...... .+..++..+ ..+.|+|.+|+|||+||+++++
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHH
Confidence 345666544443 444444333 3577899999999999999988
No 246
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.38 E-value=0.00053 Score=58.04 Aligned_cols=76 Identities=9% Similarity=-0.000 Sum_probs=57.5
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQEPYTCYADQILDIIIK 118 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~l~~i~~ 118 (157)
..+.++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+ .+. .+|+...|..- ...+...++..++.
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~ 101 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPN-PEDPNNPKIRTVPA 101 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeC-CCcchHHHHHHHHH
Confidence 3467899999999888877654 3688999999999999999987 333 33566777665 44477888888887
Q ss_pred HhCC
Q 045087 119 FLMP 122 (157)
Q Consensus 119 ~l~~ 122 (157)
+++.
T Consensus 102 ~~G~ 105 (637)
T PRK13765 102 GKGK 105 (637)
T ss_pred hcCH
Confidence 6654
No 247
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.38 E-value=0.0006 Score=53.26 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=49.8
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
..++|.++.+..+...+..+. .+.+.|.+|+|||+||+.+.. .... ...++.+.....+.+++....-.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcCchhHh
Confidence 448888888888777776653 688999999999999999988 4432 34566667667777665554433
No 248
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0028 Score=50.87 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++|+++|.+|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988875
No 249
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.38 E-value=0.0016 Score=50.05 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999987654
No 250
>PRK06547 hypothetical protein; Provisional
Probab=97.38 E-value=0.00033 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....+|+|.|.+|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999773
No 251
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.37 E-value=0.00017 Score=51.37 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.+++.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 252
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.36 E-value=0.00077 Score=54.35 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=49.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNYEM--- 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~--- 136 (157)
+...++|.|..|+|||||+..+... .+. +..+.+.++. .....+++...+..-...... ...+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~--~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARN--TDA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999988873 221 2233333333 334555665544432211100 0011222222
Q ss_pred --HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 --KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 --~~~~l~~~L--~~kr~LlVlDdV 157 (157)
....+.+++ +++.+||++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 222345555 588999999985
No 253
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.36 E-value=0.00063 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=17.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.|.|+|.||+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 5788999999999999998877
No 254
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.36 E-value=0.0012 Score=53.66 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=50.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|.|..|+|||||++.+...... +..++..++ +.....++.+.+...-...... ...+.....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4568999999999999999999873221 233333444 3344556666665432111100 001111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 2222344454 588999999985
No 255
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.36 E-value=0.0012 Score=53.72 Aligned_cols=93 Identities=10% Similarity=0.143 Sum_probs=55.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|.|.+|+|||||+..+....... +=..++++.++... ...++++.+...=...... ...+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45679999999999999998876632211 11356677776554 4567777776532111100 001122222
Q ss_pred -HHHHHHHHHh---cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL---MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L---~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 2233466666 678999999985
No 256
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0015 Score=54.01 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988866
No 257
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.34 E-value=0.0022 Score=51.88 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|.++|.+|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999988865
No 258
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.34 E-value=0.00079 Score=54.64 Aligned_cols=93 Identities=11% Similarity=0.203 Sum_probs=57.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|.|.+|+|||+|+..+..+.. +.+-+.++|+.++... ...++++.+...-...... ...+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 456789999999999999988877422 2334678888887655 3566777765432111100 001111112
Q ss_pred -HHHHHHHHHhc---CCcEEEEeeCC
Q 045087 136 -MKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
...-.+.++++ ++.+||++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 22344556664 58999999985
No 259
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.34 E-value=0.00029 Score=51.10 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|+|..|.||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988766
No 260
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.33 E-value=0.00043 Score=51.02 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=35.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIK 118 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~ 118 (157)
-..++|.|.+|+|||+|+..+.++ .. -+..+++.+++.. ...++++.+..
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~--~~--~d~~V~~~iGer~~Ev~~~~~~~~~ 65 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANN--QD--ADVVVYALIGERGREVTEFIEELKG 65 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--CT--TTEEEEEEESECHHHHHHHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhc--cc--ccceeeeeccccchhHHHHHHHHhh
Confidence 357899999999999999988873 22 2334788887653 45666666644
No 261
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.33 E-value=0.00047 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.046 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 262
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00019 Score=59.80 Aligned_cols=52 Identities=21% Similarity=0.126 Sum_probs=35.0
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.++=|.++-..+|...+... -....=|.+||++|+|||-||++|++ +.+-.|
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF 573 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF 573 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce
Confidence 34445565566665554432 12345678999999999999999999 555454
No 263
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.31 E-value=0.00021 Score=50.15 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999999988
No 264
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.0018 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998877765
No 265
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.00094 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988875
No 266
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00027 Score=54.13 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHH
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILD 114 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~ 114 (157)
-.+|...+.....+..+|+|+|.||+|||||..++-....-+.+=-.++-|.-+++++--.++.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 3567777777777889999999999999999988866221111111233344455555444443
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0043 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.++|..|+||||.+..+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988876
No 268
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.31 E-value=0.00018 Score=43.25 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.|.|.+|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998887
No 269
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.31 E-value=0.0024 Score=49.09 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=25.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.+..++.|+|.+|.|||||...+.+ .+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~ 132 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSV 132 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCC
Confidence 4688999999999999999999988 444444
No 270
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.00025 Score=51.79 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 57 LLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 57 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
|+..+......+.|+|++|+|||||+..+..
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4445555678999999999999999999875
No 271
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.30 E-value=0.00026 Score=53.26 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|...+.....+..+|+|+|.||+|||||..++..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 44566666766556789999999999999999988866
No 272
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00078 Score=57.85 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=36.6
Q ss_pred CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.+.+.+... ..........|+.|||||-||+++..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 67999999999998887531 22345666789999999999998877
No 273
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.29 E-value=0.00064 Score=50.95 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999998876
No 274
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.29 E-value=0.00063 Score=49.66 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-++++|.+.....|+-..... .-+.++|.+|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 357899998888887665543 4789999999999999998843
No 275
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0027 Score=53.76 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=38.0
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999987653 234578999999999999988765
No 276
>PRK06620 hypothetical protein; Validated
Probab=97.29 E-value=0.00073 Score=49.73 Aligned_cols=49 Identities=10% Similarity=-0.117 Sum_probs=31.5
Q ss_pred CCCCcccc--HHHHHHHHHHHhcCCCC--ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 40 KSRDTVGL--DDRMEELLDLLIEGPPQ--LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 40 ~~~~~vGr--~~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-++.++|- +..+..+.+|-.....+ ...+.|||++|+|||+|++.+++.
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 34456665 23445555554321111 256899999999999999988774
No 277
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.28 E-value=0.0018 Score=49.27 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|.+|+||||+++++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 278
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.28 E-value=0.0024 Score=52.84 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-----
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR----- 125 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~----- 125 (157)
+..|-++|..+-....++.|.|.+|+|||++|..+..+ ....-..++|++...+ ..++...+ ..++.+..
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~ 333 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEK 333 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhc
Confidence 45566666444455678999999999999999888762 2233456788887653 55555544 33332100
Q ss_pred ----C--cccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 126 ----L--SEIKDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 126 ----~--~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
. ........++.+..+.+.+.. +.-++|+|.+
T Consensus 334 g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 334 GLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0 001122345566666666643 4457899974
No 279
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.28 E-value=0.0011 Score=58.02 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=40.8
Q ss_pred CccccHHHHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087 43 DTVGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY 94 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 94 (157)
.++||+.+++.|...+..- .....++.+.|.+|+|||+|+++|.. .+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 3789999999999888652 34567999999999999999999988 44443
No 280
>PRK06217 hypothetical protein; Validated
Probab=97.28 E-value=0.0007 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.|.|.|.+|.||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 281
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.26 E-value=0.00053 Score=49.05 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=46.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCccccccc--------CeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc--------
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYF--------DCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE-------- 128 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~-------- 128 (157)
..+..|+|.+|+|||+++..+..+......| ..+.|++...+ ..++...+............
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccc
Confidence 3488899999999999998876632222222 25667776665 33333333322221100000
Q ss_pred ----------cccccHHHHHHHHHHHhcC--CcEEEEeeCC
Q 045087 129 ----------IKDKNYEMKKIILHEYLMT--KRYLIVIDDV 157 (157)
Q Consensus 129 ----------~~~~~~~~~~~~l~~~L~~--kr~LlVlDdV 157 (157)
............+.+.+.. ..-++|+|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l 150 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPL 150 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-G
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCH
Confidence 0001124556667777765 3569999974
No 282
>PRK05922 type III secretion system ATPase; Validated
Probab=97.26 E-value=0.0023 Score=51.79 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=50.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccHH-----
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNYE----- 135 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~----- 135 (157)
...++|+|..|+|||||.+.+... . ..+...+..++. .....+++.+........... ...+.....
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~--~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKG--S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhcc--C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 457899999999999999999873 2 223344444433 233455665554433222110 001111111
Q ss_pred HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 ~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 2233344555 589999999986
No 283
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.26 E-value=0.0018 Score=52.38 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=47.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCH-HHHHHHHHHH-hCCCCCC-cccccccHH-----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYA-DQILDIIIKF-LMPSSRL-SEIKDKNYE----- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~l~~i~~~-l~~~~~~-~~~~~~~~~----- 135 (157)
+...++|.|..|+|||||+..+... .. -+..+...++..... .++....+.. +....-. ...+..+..
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~--~~--~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~ 231 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKG--CL--APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA 231 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc--cC--CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH
Confidence 3458899999999999999999873 21 234444445544332 3443332221 1000000 000111111
Q ss_pred HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 ~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
.....+.+++ +++.+||++||+
T Consensus 232 ~~a~~iAEyFrd~G~~Vll~~Dsl 255 (434)
T PRK08472 232 FCAMSVAEYFKNQGLDVLFIMDSV 255 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEecccc
Confidence 1122344444 588999999986
No 284
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00055 Score=56.31 Aligned_cols=53 Identities=25% Similarity=0.257 Sum_probs=36.5
Q ss_pred CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
..++.|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+++++ ....+|
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~f 304 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF 304 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE
Confidence 34566666666655554421 113456888999999999999999999 555555
No 285
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00066 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.|.|.|.+|.||||+|+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999883
No 286
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0041 Score=47.40 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=34.9
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+++=|-.+++++|.+.+... -...+-|.++|++|.|||-+|++|.+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 35566778888887765321 13456788999999999999999999
No 287
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0011 Score=55.59 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCCCCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
...+++=|.++...+|.+.+... -...+-|..||+||+|||++|+++.+ +.+-.|
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 34466777888888887666432 14567788999999999999999999 444445
No 288
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.24 E-value=0.0014 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.009 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..|+|.|..|+||||+++.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 289
>PRK00625 shikimate kinase; Provisional
Probab=97.24 E-value=0.00024 Score=50.62 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.++||+|+||||+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 290
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.23 E-value=0.0003 Score=55.90 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=56.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC-HHHHHHHHHHHhCCCCCCcccccccHHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILH 142 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 142 (157)
..+.++++|.|||||||++-.+.+ +..-|....|+....+.+ ...+.-.+...++.... +-+.-...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 467999999999999999988877 556676666655555544 44444444444554332 2233455566
Q ss_pred HHhcCCcEEEEeeC
Q 045087 143 EYLMTKRYLIVIDD 156 (157)
Q Consensus 143 ~~L~~kr~LlVlDd 156 (157)
....++|.++|+||
T Consensus 83 ~~~~~rr~llvldn 96 (414)
T COG3903 83 RRIGDRRALLVLDN 96 (414)
T ss_pred HHHhhhhHHHHhcC
Confidence 67778889999987
No 291
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=97.22 E-value=0.0012 Score=53.72 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=55.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccccccc--CeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH--
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF--DCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE-- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~-- 135 (157)
+-..++|.|-.|+|||+|+..+.+.......+ -.++++.+++.. ...++++.+...=...... ...+.....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 34678999999999999999888843322111 156777777654 4567777766432211100 001111112
Q ss_pred ---HHHHHHHHHhc---CCcEEEEeeCC
Q 045087 136 ---MKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 136 ---~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
.....+.++++ ++++||++||+
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCh
Confidence 22333566665 78899999985
No 292
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0033 Score=50.17 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++.++|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 293
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.21 E-value=0.0052 Score=46.45 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIK 118 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~ 118 (157)
...++.|.|.+|+||||++..+..+. ...+=..++|+++.. +..++...+..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHH
Confidence 45588899999999999998886632 122124577887655 33444444443
No 294
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00051 Score=47.64 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+-|.|.|.||+||||||.++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 45688999999999999999886
No 295
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.21 E-value=0.0013 Score=45.52 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999998877
No 296
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0032 Score=52.06 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=34.7
Q ss_pred CCCccccHHHHHHHHHH---HhcCC-------CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDL---LIEGP-------PQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~---L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.+++-|-|+..++|++. |.... .=.+=|.++|++|.|||-||+++...
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 45678888766665554 43321 22456889999999999999999983
No 297
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=97.21 E-value=0.0017 Score=52.75 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=57.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccccc--ccC---------eeEEEEcCCCCCHHHHHHHHHHHhC-CCCCC---cc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH--YFD---------CHAWVQEPYTCYADQILDIIIKFLM-PSSRL---SE 128 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~l~~i~~~l~-~~~~~---~~ 128 (157)
+..-++|.|-+|+|||+|+..+.+..+... ..+ .+++..++......+++...+..-+ ..... ..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 356789999999999999988887433100 011 5677778887666676666665544 11110 00
Q ss_pred cccccHH-----HHHHHHHHHhc---CCcEEEEeeCC
Q 045087 129 IKDKNYE-----MKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 129 ~~~~~~~-----~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
.+....+ .....+.++++ ++.+||++||+
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111222 22333566665 58999999985
No 298
>PRK13947 shikimate kinase; Provisional
Probab=97.20 E-value=0.00026 Score=49.74 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 299
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.20 E-value=0.0013 Score=50.13 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=50.3
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCee-EEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH-
Q 045087 64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDCH-AWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM- 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~- 136 (157)
+-.-++|.|.+|+|||+|| ..+.+. . +-+.. +++.++... ...++++.+...-...... ...+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4567899999999999996 556552 2 22344 666777654 4566666665432111000 0011112121
Q ss_pred ----HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 ----KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 ----~~~~l~~~L--~~kr~LlVlDdV 157 (157)
..-.+.+++ +++.+||++||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122333333 588999999985
No 300
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00028 Score=49.94 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=18.2
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 045087 67 AVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~ 86 (157)
.|+|+|.||+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998875
No 301
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.20 E-value=0.0005 Score=49.12 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEE
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQ 102 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 102 (157)
.+++.|+|++|+|||||+..+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46889999999999999999998 6666775444444
No 302
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.20 E-value=0.00023 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 303
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.19 E-value=0.00024 Score=50.56 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998877
No 304
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.19 E-value=0.0019 Score=52.10 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=49.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|.|..|+|||||+..+.... . .+..++..++... ...++...+...=...... ...+....+
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~--~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT--E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC--C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 34579999999999999999888732 2 1344445555533 3555555554331111000 001111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1222334444 588999999985
No 305
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.19 E-value=0.0036 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||++.++.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999988
No 306
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.18 E-value=0.00032 Score=49.76 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|+|++|+|||||++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998866
No 307
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0037 Score=53.25 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=62.0
Q ss_pred CCCCCccccHHHHHHHHHHHhcCC-----------CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEGP-----------PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC 107 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 107 (157)
....++-|..+..+.|++.+.... ....-|.++|++|+|||.||.++.... .--|+++..+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-------~~~fisvKGP- 735 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-------NLRFISVKGP- 735 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-------CeeEEEecCH-
Confidence 345678888888888888886542 234568899999999999999988721 1235666554
Q ss_pred CHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeC
Q 045087 108 YADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDD 156 (157)
Q Consensus 108 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDd 156 (157)
+++ ...-+ .+++.....+.+.-.-++|+|.+|+
T Consensus 736 ---ElL----~KyIG---------aSEq~vR~lF~rA~~a~PCiLFFDE 768 (952)
T KOG0735|consen 736 ---ELL----SKYIG---------ASEQNVRDLFERAQSAKPCILFFDE 768 (952)
T ss_pred ---HHH----HHHhc---------ccHHHHHHHHHHhhccCCeEEEecc
Confidence 222 22111 2234555555566677899999986
No 308
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.17 E-value=0.0021 Score=51.79 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=49.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|+|..|+|||||+..+... ... +..+...++... ...+++...+.+-+..... ...+.....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 4568999999999999999988873 222 223333344333 4445555544321111000 001111212
Q ss_pred -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
.....+.+++ +++.+||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 2223344454 588999999985
No 309
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.17 E-value=0.00058 Score=52.55 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=45.3
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeE
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHA 99 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 99 (157)
...+++|.+..+..|.+.+.. ...++...+|++|.|||+-|.++.+..--.+.|.+++
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 346789999999999999987 3578999999999999999988877322234465554
No 310
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.00088 Score=52.90 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=41.3
Q ss_pred ccCCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 36 SSSSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 36 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.+.....++|.+...+.|...+..+. -...+.++|..|+||||+|..+.+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 334456779999999999999887763 334688899999999999998877
No 311
>PHA00729 NTP-binding motif containing protein
Probab=97.17 E-value=0.00069 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+.|+|.+|+||||||..+.+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 312
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.16 E-value=0.0032 Score=49.20 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=50.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
....++|+|..|.|||||.+.+... ... +..+...++. .....++....+..-...... ...+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 3457899999999999999998873 221 2344444443 345566666555432211000 001111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 2222334444 588999999985
No 313
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.15 E-value=0.00018 Score=47.06 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|-|+|.+|+|||+||..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999765
No 314
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.15 E-value=0.0024 Score=51.94 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=50.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM--- 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~--- 136 (157)
+...++|+|..|+|||||++.+.... ..+..++..++... ...++...+...-...... ...+......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 34579999999999999999887731 12333444444432 4555555554432211100 0011222221
Q ss_pred --HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 --KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 --~~~~l~~~L--~~kr~LlVlDdV 157 (157)
....+.+++ +++.+||++||+
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecch
Confidence 122344444 688999999985
No 315
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.14 E-value=0.0026 Score=51.67 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+...++|+|..|+|||||++.+..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998887
No 316
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.14 E-value=0.00082 Score=48.97 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccc-------ccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087 49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYM-------KHYFDCHAWVQEPYTCYADQILDIIIK 118 (157)
Q Consensus 49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~F~~~~wv~~~~~~~~~~~l~~i~~ 118 (157)
.+.+.+...+... .+..|+|++|.|||+++..+.. .+ ...-...+-++.......+.++..+..
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~--~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIA--QLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHH--HH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHH--HhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3455554444332 2688899999999976655554 22 122344444555555566677777665
No 317
>PTZ00185 ATPase alpha subunit; Provisional
Probab=97.14 E-value=0.003 Score=52.16 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=53.2
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHhcCcccc-----cccCeeEEEEcCCCCCHHHHHHHHHHHhC-CCCCC---ccccccc
Q 045087 64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMK-----HYFDCHAWVQEPYTCYADQILDIIIKFLM-PSSRL---SEIKDKN 133 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~~~~~~~~~l~~i~~~l~-~~~~~---~~~~~~~ 133 (157)
+...++|.|-.|+|||+|| ..+.+...+. ++-..++++.+++..+.-.-+...+.+-+ ..... ...+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4567899999999999997 6666643221 23356788889887654333444444433 11100 0011111
Q ss_pred HHH-----HHHHHHHHh--cCCcEEEEeeCC
Q 045087 134 YEM-----KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 134 ~~~-----~~~~l~~~L--~~kr~LlVlDdV 157 (157)
..+ ....+.+++ +++.+|+|+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111 122233444 588999999995
No 318
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.14 E-value=0.00041 Score=49.20 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++++|+|++|+|||||++.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999988
No 319
>PRK12678 transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.0012 Score=55.14 Aligned_cols=92 Identities=12% Similarity=0.062 Sum_probs=49.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccccc-ccCeeEEE-EcCCCC-CHHHHHHHHHHHhCCC-CCCcccccccHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDCHAWV-QEPYTC-YADQILDIIIKFLMPS-SRLSEIKDKNYEMKKI 139 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv-~~~~~~-~~~~~l~~i~~~l~~~-~~~~~~~~~~~~~~~~ 139 (157)
+-....|+|.+|+|||||++.+.+ .+.. +-++.+++ .++... ...++...+-..+..+ .+.+...-.....+.-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 345788999999999999999988 3432 23444444 444433 3334433321111111 1100000111123333
Q ss_pred HHHHHh--cCCcEEEEeeCC
Q 045087 140 ILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 140 ~l~~~L--~~kr~LlVlDdV 157 (157)
.+.++| .++.+||+||++
T Consensus 493 ~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCc
Confidence 444555 688999999985
No 320
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.13 E-value=0.0018 Score=47.49 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998876
No 321
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.13 E-value=0.00044 Score=49.05 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999877
No 322
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.12 E-value=0.0013 Score=47.01 Aligned_cols=21 Identities=14% Similarity=0.011 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 323
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.12 E-value=0.0037 Score=49.55 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=38.2
Q ss_pred CCCCCccccHHHHHHH---HHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 39 SKSRDTVGLDDRMEEL---LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.....+||..+..+.. .+++..+.-..+.+.+.|++|.|||+||..+.+ ++....
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~ 78 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDV 78 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCC
Confidence 3456899998877764 455555544467899999999999999999999 665443
No 324
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.11 E-value=0.0004 Score=55.91 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCccccHHHHHHHHHHHhc-------C-----C--CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIE-------G-----P--PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-------~-----~--~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.|...+.. . . .....+.++|++|+|||+||+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999988655521 0 0 1235688999999999999999986
No 325
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.11 E-value=0.0012 Score=46.95 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=29.9
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
+.|.|.+|+|||+||.++... .-..=..++|++... +..++...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHHH
Confidence 578999999999999887652 212224567887654 455555443
No 326
>PRK06820 type III secretion system ATPase; Validated
Probab=97.11 E-value=0.0056 Score=49.71 Aligned_cols=90 Identities=12% Similarity=0.150 Sum_probs=47.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH---
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM--- 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~--- 136 (157)
+...++|+|.+|+|||||+..+... . +-+..++..++... ...+++...+..=...... ...+......
T Consensus 162 ~Gqri~I~G~sG~GKStLl~~I~~~--~--~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a 237 (440)
T PRK06820 162 EGQRIGIFAAAGVGKSTLLGMLCAD--S--AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKG 237 (440)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcc--C--CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHH
Confidence 3458899999999999999988873 2 12334455555442 2333333322110000000 0011112221
Q ss_pred --HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 --KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 --~~~~l~~~L--~~kr~LlVlDdV 157 (157)
....+.+++ +++.+||++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (440)
T PRK06820 238 LSTATTIAEYFRDRGKKVLLMADSL 262 (440)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 222344555 588999999985
No 327
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.11 E-value=0.0032 Score=51.03 Aligned_cols=90 Identities=9% Similarity=0.024 Sum_probs=48.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCC--------CCCcccccccH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPS--------SRLSEIKDKNY 134 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~--------~~~~~~~~~~~ 134 (157)
+...++|.|..|+|||||+..+.... . .+..+...+.. .....++....+..-... .+.+.......
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~--~--~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a 229 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT--Q--ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKA 229 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc--C--CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHH
Confidence 45689999999999999999887732 1 12322222322 223344443433332211 00000111222
Q ss_pred HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087 135 EMKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 135 ~~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
.+....+.+++ +++.+||++||+
T Consensus 230 ~e~a~~iAEyfr~~g~~Vll~~Dsl 254 (434)
T PRK07196 230 TELCHAIATYYRDKGHDVLLLVDSL 254 (434)
T ss_pred HHHHHHHHHHhhhccCCEEEeecch
Confidence 33344455554 578999999985
No 328
>PRK10536 hypothetical protein; Provisional
Probab=97.10 E-value=0.0013 Score=49.67 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=36.8
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+...+.++......+..+|... .++.++|..|+|||+||.++..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 3456788888888888888653 38999999999999999887663
No 329
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.10 E-value=0.0025 Score=51.79 Aligned_cols=90 Identities=11% Similarity=0.095 Sum_probs=47.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-CCHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|.|..|+|||||++.+... ... +..+...++.. ....++....+..-...... ...+.....
T Consensus 162 ~Gq~~~I~G~sG~GKStLl~~I~~~--~~~--~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~ 237 (440)
T TIGR01026 162 KGQRIGIFAGSGVGKSTLLGMIARN--TEA--DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKG 237 (440)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--CCC--CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 3457899999999999999988873 221 22333334332 23444554433321100000 001111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 238 ~~~a~t~AE~frd~G~~Vll~~Dsl 262 (440)
T TIGR01026 238 AYVATAIAEYFRDQGKDVLLLMDSV 262 (440)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 2222334444 588999999985
No 330
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.09 E-value=0.0036 Score=47.27 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...+++|.|+.|+|||||.+.++.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3569999999999999999999873
No 331
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.09 E-value=0.00038 Score=47.92 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998773
No 332
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0051 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++++|..|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 333
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.09 E-value=0.0005 Score=49.81 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|++|+|||||++.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 334
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.011 Score=44.54 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=60.3
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHh
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFL 120 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l 120 (157)
...+.-..+.+.+...-..-..+..++.++|.-|.|||++++++... .-+ +.++-+.++ ...+...++..|...+
T Consensus 28 ~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 28 GLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred hhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHh
Confidence 33444444444444333322334569999999999999999955441 111 112224443 4467788889998888
Q ss_pred CCCCCCccccc-ccHHHHHHHHHHHh-cCCc-EEEEeeC
Q 045087 121 MPSSRLSEIKD-KNYEMKKIILHEYL-MTKR-YLIVIDD 156 (157)
Q Consensus 121 ~~~~~~~~~~~-~~~~~~~~~l~~~L-~~kr-~LlVlDd 156 (157)
..+.. ... .-.++....|.... +++| ..++.||
T Consensus 104 ~~~p~---~~~~~~~e~~~~~L~al~~~g~r~v~l~vdE 139 (269)
T COG3267 104 ESQPK---VNVNAVLEQIDRELAALVKKGKRPVVLMVDE 139 (269)
T ss_pred ccCcc---chhHHHHHHHHHHHHHHHHhCCCCeEEeehh
Confidence 87321 111 11233333333333 4666 7777776
No 335
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.08 E-value=0.0039 Score=51.61 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=40.7
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3567999999999998888654444568899999999999999999883
No 336
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.07 E-value=0.00038 Score=47.41 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998887
No 337
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=97.07 E-value=0.0032 Score=51.25 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=55.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE---- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~---- 135 (157)
+...++|.|.+|+|||+|+..+..+.. .++=...+++.++... ...+++..+...=...... ...+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 456789999999999999988876321 1122366777776654 4567777775431111100 001122222
Q ss_pred -HHHHHHHHHh---cCCcEEEEeeCC
Q 045087 136 -MKKIILHEYL---MTKRYLIVIDDV 157 (157)
Q Consensus 136 -~~~~~l~~~L---~~kr~LlVlDdV 157 (157)
...-.+.+++ +++.+||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecch
Confidence 2233456666 468999999985
No 338
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.06 E-value=0.00092 Score=45.95 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=26.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEcCC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQEPY 105 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~ 105 (157)
++|.|+|..|+|||||++.+.+ .+. ..+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4799999999999999999988 554 3455555555433
No 339
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.06 E-value=0.00052 Score=46.93 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.|+|++|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999988
No 340
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.06 E-value=0.0048 Score=49.93 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=49.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC-CCCHHHHHHHHHHHhCCCCCC---cccccccH-----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSSRL---SEIKDKNY----- 134 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~l~~i~~~l~~~~~~---~~~~~~~~----- 134 (157)
+...++|.|..|+|||||.+.+... .. .+..+...++. .....+++............. ...+....
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~I~~~--~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~ 219 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGMIARG--AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKA 219 (422)
T ss_pred CCCEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHH
Confidence 3457899999999999999999883 22 23344444443 345556655544332211110 00011111
Q ss_pred HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087 135 EMKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 135 ~~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
......+.+++ .++++|+++|++
T Consensus 220 ~~~a~~~AE~f~~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 220 AYTATAIAEYFRDQGKRVLLMMDSL 244 (422)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 12223344444 578999999985
No 341
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.05 E-value=0.00032 Score=47.84 Aligned_cols=44 Identities=25% Similarity=0.149 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
||.-..++++.+.+..-......|.|+|..|+||+++|+.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 46666677777666542223457889999999999999999884
No 342
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.05 E-value=0.0049 Score=48.08 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999988866
No 343
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.05 E-value=0.0043 Score=44.05 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=30.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLM 121 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~ 121 (157)
.+.|.|.+|.|||++|..+... ... ...++.-... ...++.+.|..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~-~~~e~~~ri~~h~~ 51 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQP-FDDEMAARIAHHRQ 51 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCC-ChHHHHHHHHHHHh
Confidence 6889999999999999988762 211 2334443333 33456666655443
No 344
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.05 E-value=0.0011 Score=49.33 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999998877
No 345
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0025 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57899999999999999987766
No 346
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.03 E-value=0.00066 Score=49.15 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++..++.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999877
No 347
>PRK13949 shikimate kinase; Provisional
Probab=97.02 E-value=0.00053 Score=48.58 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-|.|+|++|.||||+++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998877
No 348
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.02 E-value=0.0051 Score=49.84 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=50.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHhCCCCCC--c-ccccccH-----
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFLMPSSRL--S-EIKDKNY----- 134 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l~~~~~~--~-~~~~~~~----- 134 (157)
+...++|+|..|.|||||+..++... +. +..+...++ +.....+++...+..-+..... . ..+....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~--~~--~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA--KA--DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC--CC--CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 34588999999999999999998842 21 222222333 3356677777665542211100 0 0111111
Q ss_pred HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087 135 EMKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 135 ~~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
......+.+++ +++.+||++||+
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecch
Confidence 12223344444 478999999985
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.0047 Score=44.11 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45999999999999999999987
No 350
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.01 E-value=0.003 Score=44.77 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=32.1
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 68 VTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
+.|.|.+|.|||++|.++... .....+++.....++. ++.+.|...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHH
Confidence 578999999999999988652 2235667776666653 455555543
No 351
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.01 E-value=0.00084 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999887
No 352
>PRK14530 adenylate kinase; Provisional
Probab=97.00 E-value=0.00055 Score=50.18 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998876
No 353
>PRK09087 hypothetical protein; Validated
Probab=97.00 E-value=0.0018 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.+.+.|||.+|+|||+|++..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999988863
No 354
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.00 E-value=0.0043 Score=42.67 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...+++|+|..|.|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3468999999999999999999873
No 355
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.99 E-value=0.00056 Score=47.04 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=18.6
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 356
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.99 E-value=0.00066 Score=48.63 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.++.|+|++|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37889999999999999999773
No 357
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.99 E-value=0.00075 Score=47.82 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=17.7
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
+.|+|.+|+|||||.+.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 68999999999999999887
No 358
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.99 E-value=0.0027 Score=49.80 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.+.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456666654445678999999999999999998766
No 359
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.0013 Score=53.67 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=38.6
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..++.|.+++..+. -...+.++|.+|+||||+|+.+.+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999999999987653 235677899999999999988866
No 360
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.99 E-value=0.0015 Score=54.77 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=34.2
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+.|.+-.+.|.+..........+|.++|++|+||||+|+.++.
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 4445566666666665554445566899999999999999999987
No 361
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.99 E-value=0.0067 Score=48.97 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087 46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL 120 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l 120 (157)
|.......|-+++. +-....++.|.|.+|+|||++|..+..+...+.. ..++|++.. .+..++...++...
T Consensus 176 gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 176 GLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred ceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHHHHH
Confidence 33333344444332 3334568889999999999999888753222222 245666643 35566666665543
No 362
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.97 E-value=0.00079 Score=54.19 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=35.7
Q ss_pred CCCccccHHHHHHHHHHHhc----------CC------CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIE----------GP------PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~----------~~------~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|.++.++.|...+.. .. .....+.++|++|+|||+||+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 35689999999988665521 11 0125789999999999999999986
No 363
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.97 E-value=0.0015 Score=51.38 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=35.3
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-..++|.+..+..|.-.+.... ..-+.|.|.+|+|||||++.+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 3568999999988765555432 44677999999999999999964
No 364
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.97 E-value=0.0035 Score=51.45 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCC-------C---cccccc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSR-------L---SEIKDK 132 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~-------~---~~~~~~ 132 (157)
+...++|.|-+|+|||+|+..+.... .+.+=+.++++.++... ...+++..++..-..+.. . ...+..
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 45689999999999999998777631 11112678888887654 456777777652111110 0 001111
Q ss_pred cHH-----HHHHHHHHHhc--CC-cEEEEeeCC
Q 045087 133 NYE-----MKKIILHEYLM--TK-RYLIVIDDV 157 (157)
Q Consensus 133 ~~~-----~~~~~l~~~L~--~k-r~LlVlDdV 157 (157)
... ...-.+.++++ ++ .+||++||+
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~Dsl 271 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNI 271 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 111 33444667773 44 899999996
No 365
>PLN02924 thymidylate kinase
Probab=96.97 E-value=0.0038 Score=46.13 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|+|-|..|+||||+++.+.+.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~ 39 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSF 39 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999883
No 366
>PRK06761 hypothetical protein; Provisional
Probab=96.96 E-value=0.0016 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+++.|.|++|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999984
No 367
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.002 Score=51.19 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+....+++|.+...+.|.+.+..+. -...+.++|+.|+||+|+|..+.+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3345679999999999999887753 234588999999999999987766
No 368
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.95 E-value=0.0018 Score=50.66 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|....+.++.+.+..-......|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999888888765333345788999999999999999986
No 369
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.95 E-value=0.0016 Score=45.86 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
..+++|.++|.. +++.++|.+|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456778777754 488999999999999999998863
No 370
>PRK13948 shikimate kinase; Provisional
Probab=96.95 E-value=0.0008 Score=48.30 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999987
No 371
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0007 Score=49.43 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999884
No 372
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.95 E-value=0.0012 Score=51.81 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=34.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.++|.+..++.|.-.+... +...+.+.|.+|+||||+|+.+..
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 467899999988876544322 134688999999999999998855
No 373
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.95 E-value=0.004 Score=45.81 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI 115 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~ 115 (157)
.|-+.|..+-....++.|.|.+|+|||++|..++.. ..+. =..++|++... +..++.+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~-~~~~-g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQ-GLKN-GEKAMYISLEE--REERILGY 62 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH-HHhC-CCeEEEEECCC--CHHHHHHH
Confidence 344445444455679999999999999999877652 1222 24567777765 34454444
No 374
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.94 E-value=0.00084 Score=48.80 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..++.|.|.+|+||||+|+.+.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999883
No 375
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.93 E-value=0.0051 Score=52.75 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=38.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...++|....+..+.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 347999999888887776543223457889999999999999999884
No 376
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.0016 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=19.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++.+.|.||+||||+|.+..-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~ 24 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV 24 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH
Confidence 46889999999999999987544
No 377
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=96.92 E-value=0.005 Score=50.61 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=53.9
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH-
Q 045087 64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM- 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~- 136 (157)
+...++|.|-.|+|||||| ..+.+. . .-+. ++++.+++.. ...++++.+...=...... ...+.....+
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 4567899999999999996 577773 2 2344 6788888764 4566777666542211100 0011111121
Q ss_pred ----HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 ----KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 ----~~~~l~~~L--~~kr~LlVlDdV 157 (157)
....+.+++ +++.+|||+||+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCh
Confidence 122344455 688999999995
No 378
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0012 Score=52.37 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=37.4
Q ss_pred CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-+++.|.++..+-|.+.+.- .....+-|.++|++|.|||.||++|+.
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 346788888888777776532 124567889999999999999999998
No 379
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=96.92 E-value=0.0045 Score=50.68 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=51.1
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEMK 137 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~ 137 (157)
+...++|.|-.|+|||+|| ..+.+. . .-+. ++++.+++.. ...++++.+...=...... ...+.....+.
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~ 215 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQY 215 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHH
Confidence 3567899999999999996 556552 1 2243 4777887654 4566776666432111100 00111111211
Q ss_pred -----HHHHHHHh--cCCcEEEEeeCC
Q 045087 138 -----KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 138 -----~~~l~~~L--~~kr~LlVlDdV 157 (157)
...+.+++ +++.+|||+||+
T Consensus 216 ~ap~~a~aiAEyfr~~G~~VLlv~Ddl 242 (485)
T CHL00059 216 LAPYTGAALAEYFMYRGRHTLIIYDDL 242 (485)
T ss_pred HHHHHHhhHHHHHHHcCCCEEEEEcCh
Confidence 12233343 588999999995
No 380
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.92 E-value=0.0065 Score=49.91 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+++++|..|+||||++..++.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 357999999999999999988876
No 381
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.91 E-value=0.014 Score=47.07 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=42.8
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEE-EEc-CCCCCHHHHHHHHHHHhC
Q 045087 51 MEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAW-VQE-PYTCYADQILDIIIKFLM 121 (157)
Q Consensus 51 ~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~-~~~~~~~~~l~~i~~~l~ 121 (157)
.++|.++|-.. .....+|.++|.-|.||||.|-++.. .+++ ....+- |++ ...+...+=|+.++.+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 46677777532 13467899999999999999988877 3443 222222 222 122334455666777766
Q ss_pred CC
Q 045087 122 PS 123 (157)
Q Consensus 122 ~~ 123 (157)
.+
T Consensus 156 v~ 157 (451)
T COG0541 156 VP 157 (451)
T ss_pred Cc
Confidence 53
No 382
>PLN02348 phosphoribulokinase
Probab=96.91 E-value=0.0081 Score=48.01 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++..+|+|.|.+|.||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 383
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.91 E-value=0.011 Score=41.56 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...+++|+|..|.|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999884
No 384
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.90 E-value=0.00083 Score=44.06 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHhcCc
Q 045087 68 VTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~~~ 89 (157)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 385
>PRK13975 thymidylate kinase; Provisional
Probab=96.90 E-value=0.00085 Score=48.21 Aligned_cols=22 Identities=18% Similarity=-0.029 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999988
No 386
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0097 Score=51.38 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++++|+.|+||||++.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999999988876
No 387
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.89 E-value=0.0032 Score=45.41 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
....|+|+|.+|+|||||...+....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35689999999999999999888753
No 388
>PRK05595 replicative DNA helicase; Provisional
Probab=96.89 E-value=0.012 Score=47.87 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087 45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL 120 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l 120 (157)
.|.......|-+++ .+-....++.|-|.+|+|||++|..+..+...+... .++|++. ..+..++...++...
T Consensus 182 ~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~-~vl~fSl--Ems~~~l~~R~~a~~ 253 (444)
T PRK05595 182 TGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALREGK-SVAIFSL--EMSKEQLAYKLLCSE 253 (444)
T ss_pred CcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCC-cEEEEec--CCCHHHHHHHHHHHh
Confidence 34444445554433 333445688888999999999998887632222222 3455554 335556666655544
No 389
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.89 E-value=0.00062 Score=47.53 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=18.0
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999887
No 390
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.89 E-value=0.0037 Score=53.23 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|.+...++|.+.+... ..-.+-+.++|.+|+|||++|+.+..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34667777776666554321 01123488999999999999999988
No 391
>PRK13946 shikimate kinase; Provisional
Probab=96.88 E-value=0.00089 Score=47.94 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.|.++|++|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 392
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.88 E-value=0.0025 Score=50.25 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=41.2
Q ss_pred CCCCCccccHHHHHH---HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccc
Q 045087 39 SKSRDTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMK 92 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 92 (157)
.....+||..+..+. +.+++.++.-..+.|.++|++|.|||+||-.+.+ ++.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~--eLG 90 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAR--ELG 90 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHH--HhC
Confidence 345789998887766 4666666655668899999999999999999988 454
No 393
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0016 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|+|||||++.+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999855
No 394
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.88 E-value=0.022 Score=44.99 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=37.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDIII 117 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~i~ 117 (157)
+...++|.|..|+|||+|+..+.++. +-+.++++.++... ...+++..+-
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 34588999999999999999998842 23578888887654 3556666653
No 395
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.88 E-value=0.0014 Score=51.74 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+-+.+||.++.+..|...+.+. +..-+.|.|..|+||||+|+.+++
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999888887666554 345577999999999999999865
No 396
>PRK13973 thymidylate kinase; Provisional
Probab=96.88 E-value=0.0074 Score=44.22 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..|+|-|..|+||||+++.++..
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~ 26 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAER 26 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999883
No 397
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0018 Score=55.48 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999999997753 244567899999999999998876
No 398
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.85 E-value=0.0017 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+++.+.|-||+||||+|.++.-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5788999999999999966543
No 399
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=96.85 E-value=0.0057 Score=50.02 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccc---cccCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH-
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMK---HYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE- 135 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~- 135 (157)
+-..++|.|-.|+|||+|+..+.++.... +.| .++++.+++.. ...++++.+...=...... ...+.....
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence 35678899999999999998888853321 112 56777787654 4667777776542111100 001111111
Q ss_pred ----HHHHHHHHHhc---CCcEEEEeeCC
Q 045087 136 ----MKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 136 ----~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
.....+.++++ ++++||++||+
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~Dsl 249 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDM 249 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcCh
Confidence 22344566665 48999999985
No 400
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0045 Score=45.39 Aligned_cols=49 Identities=14% Similarity=-0.096 Sum_probs=34.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDI 115 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~ 115 (157)
...|+|-|.-|+||||.++.+++ .++.....++|..-+.....-+.+..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~ 51 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRE 51 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHH
Confidence 45789999999999999999999 56655445566655555333343333
No 401
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.84 E-value=0.001 Score=47.15 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..|.|+|+.|.||||+++.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999986
No 402
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.84 E-value=0.00083 Score=46.97 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.8
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|+|+|..|+|||||+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 403
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.83 E-value=0.0034 Score=48.50 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+.+.+........+++|+|.+|+|||||+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 334444444345678999999999999999988876
No 404
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.0088 Score=46.59 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=37.6
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++|.+..++.|.+.+..+. -.+...++|..|+||+++|..+.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887753 246888999999999999977755
No 405
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.83 E-value=0.0079 Score=48.19 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC-CCCCHHHHHHHHHHHhCCCCCCc---
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP-YTCYADQILDIIIKFLMPSSRLS--- 127 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~l~~i~~~l~~~~~~~--- 127 (157)
..|--+|.-+ ....++|..-+|+|||||...+++. ..++..+-.-++ +.....+++++.+..-+.....-
T Consensus 152 RaIDgllT~G--~GQRiGIFAgsGVGKStLLgMiar~----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvA 225 (441)
T COG1157 152 RAIDGLLTCG--KGQRIGIFAGSGVGKSTLLGMIARN----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVA 225 (441)
T ss_pred eeeecccccc--cCceeEEEecCCCcHHHHHHHHhcc----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEE
Confidence 3343444333 3457999999999999999999883 334544433343 44567888888776654322110
Q ss_pred ccccccH-----HHHHHHHHHHh--cCCcEEEEeeCC
Q 045087 128 EIKDKNY-----EMKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 128 ~~~~~~~-----~~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
..+.... ......+.+++ ++|++||++|.|
T Consensus 226 TSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSl 262 (441)
T COG1157 226 TSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSL 262 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecH
Confidence 0112222 23355566777 578999999974
No 406
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=96.83 E-value=0.0056 Score=50.54 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=52.8
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHH-
Q 045087 64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEM- 136 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~- 136 (157)
+...++|.|..|+|||+|| ..+.+. ...+. ++++.+++.. ...++++.+...=...... ...+.....+
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~----~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQ----KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhh----cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 4567899999999999996 666662 13355 4788888765 4566777766532111100 0011111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEeeCC
Q 045087 137 ----KKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 137 ----~~~~l~~~L--~~kr~LlVlDdV 157 (157)
....+.+++ +++.+||++||+
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddl 262 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDL 262 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecch
Confidence 122233444 578999999995
No 407
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.82 E-value=0.0019 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 61 GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
......+|+|.|.+|.||||||+.+..
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 444678999999999999999999977
No 408
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.82 E-value=0.0045 Score=50.35 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+...++|.|..|+|||||++.+..
T Consensus 174 ~Gqri~I~G~sG~GKTTLL~~Ia~ 197 (455)
T PRK07960 174 RGQRMGLFAGSGVGKSVLLGMMAR 197 (455)
T ss_pred CCcEEEEECCCCCCccHHHHHHhC
Confidence 456899999999999999998887
No 409
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.81 E-value=0.0017 Score=46.72 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...++.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999873
No 410
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.81 E-value=0.0079 Score=46.51 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCcccccc---cCeeEEEE----cCCCCCHHHHHHHHHHH
Q 045087 48 DDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY---FDCHAWVQ----EPYTCYADQILDIIIKF 119 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~----~~~~~~~~~~l~~i~~~ 119 (157)
+.-.+.|.+.+.... ....+|+|.|.=|+|||++.+.+.+ ++.+. --..+|++ -....-...++..|..+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 344567777777643 5678999999999999999999988 44443 11223333 22222344556666665
Q ss_pred hC
Q 045087 120 LM 121 (157)
Q Consensus 120 l~ 121 (157)
+.
T Consensus 80 l~ 81 (325)
T PF07693_consen 80 LE 81 (325)
T ss_pred HH
Confidence 54
No 411
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.81 E-value=0.0043 Score=51.08 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
.|-++|..+-.+.+.+.|.|.+|+||||+|.++... -.++.=+.++|+++.. +..++.+..
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~-g~~~~ge~~lyvs~eE--~~~~l~~~~ 69 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN-GIIHFDEPGVFVTFEE--SPQDIIKNA 69 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH-HHHhCCCCEEEEEEec--CHHHHHHHH
Confidence 344455555566789999999999999999877441 2232225788888754 445555543
No 412
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.80 E-value=0.0028 Score=49.80 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCccccHHHHHHHHHHHhcC----CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..|+|.++.+++|.+.+... +.+.+++.+.|+.|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999988542 35678999999999999999998876
No 413
>PRK04182 cytidylate kinase; Provisional
Probab=96.79 E-value=0.0012 Score=46.57 Aligned_cols=21 Identities=29% Similarity=0.183 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|.|.|++|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 414
>PRK14527 adenylate kinase; Provisional
Probab=96.79 E-value=0.0012 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.136 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.|+|.+|.||||+|+.+.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998875
No 415
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.79 E-value=0.01 Score=47.75 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=24.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT 106 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 106 (157)
++.|+|+.++||||+++.+.. ...+. .+++...+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~ 73 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDL 73 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecch
Confidence 999999999999999966655 22222 566655443
No 416
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.78 E-value=0.0011 Score=46.72 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+.|+|++|+||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999987
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.78 E-value=0.0024 Score=52.98 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=36.3
Q ss_pred CCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++--.+-++++..||.. +....+++.++|++|+||||.++.+++
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 3455556778899999964 233457899999999999999999987
No 418
>PRK08760 replicative DNA helicase; Provisional
Probab=96.77 E-value=0.013 Score=48.24 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
.|...-...|-+++ .+-....++.|.|.+|+|||++|..+..+...+... .++++++ ..+..++...++..
T Consensus 210 ~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~fSl--EMs~~ql~~Rl~a~ 280 (476)
T PRK08760 210 TGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVFSM--EMSASQLAMRLISS 280 (476)
T ss_pred CcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEEec--cCCHHHHHHHHHHh
Confidence 33344444444432 233455688899999999999998887632222222 3445443 23444555555443
No 419
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.77 E-value=0.0029 Score=49.53 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=33.9
Q ss_pred ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|....+.++.+.+..-......|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 46777777777777654333345789999999999999999987
No 420
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.77 E-value=0.0017 Score=42.55 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHh
Q 045087 65 LSAVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~ 86 (157)
...++|+|.+|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999876
No 421
>PLN02200 adenylate kinase family protein
Probab=96.76 E-value=0.0014 Score=48.95 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++.|.|++|+||||+|+.+..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999998876
No 422
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.75 E-value=0.0045 Score=44.61 Aligned_cols=23 Identities=17% Similarity=-0.074 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|+|.|+.|+||||+++.+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 423
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.74 E-value=0.0013 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
.-|.|+|.+|+|||||+.++.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468899999999999999998763
No 424
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.74 E-value=0.0012 Score=47.30 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998877
No 425
>PRK14532 adenylate kinase; Provisional
Probab=96.73 E-value=0.0012 Score=47.23 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|.+.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998876
No 426
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.72 E-value=0.0051 Score=48.03 Aligned_cols=41 Identities=7% Similarity=-0.036 Sum_probs=30.6
Q ss_pred CccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++=..+....+..++..+ +.|.|.|.+|+||||+|+.+..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH
Confidence 3444445556677777553 3689999999999999999977
No 427
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0048 Score=51.70 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCCCCccccHHHHHHHHHHHh---cCC-------CCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 39 SKSRDTVGLDDRMEELLDLLI---EGP-------PQLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
....++-|.++..++|.+.+. +.. .-.+-+.++|++|.|||.||+++....
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 445678999988888877763 221 224568889999999999999999943
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0031 Score=45.25 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
..++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578899999999999999999953
No 429
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.71 E-value=0.0059 Score=50.52 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
+..|-+.|..+-+...++.|.|.+|+|||+||.++... ....+-..++|+++.. +.+++...+
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~-~~~~~ge~~lyis~ee--~~~~i~~~~ 79 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVN-GIKRFDEPGVFVTFEE--SPEDIIRNV 79 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCEEEEEccC--CHHHHHHHH
Confidence 34555556555566789999999999999999877542 2222235678888766 444555554
No 430
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0012 Score=46.41 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+|+|-|.+|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6889999999999999999884
No 431
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.71 E-value=0.02 Score=46.40 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087 49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIK 118 (157)
Q Consensus 49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~ 118 (157)
.....|-+++ .+-....++.|.|.+|+|||++|..+..+...... ..++|+++.- +..++...++.
T Consensus 180 tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g-~~vl~~SlEm--~~~~i~~R~~~ 245 (434)
T TIGR00665 180 TGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAIKEG-KPVAFFSLEM--SAEQLAMRMLS 245 (434)
T ss_pred CCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CeEEEEeCcC--CHHHHHHHHHH
Confidence 3334443333 23344568889999999999999887663222222 2456666443 44444444443
No 432
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.70 E-value=0.0039 Score=42.02 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=32.3
Q ss_pred CCccccHHHHHHHHHHH----hcC-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLL----IEG-PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L----~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|..-..+.+.+.+ ... ..+.-|++..|.+|+|||.+++.+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 45777765555555544 332 34567888999999999998877766
No 433
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.70 E-value=0.0015 Score=45.76 Aligned_cols=21 Identities=29% Similarity=0.188 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|.+|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 434
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.70 E-value=0.0018 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|+++|.+|+|||||+..+++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 435
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.69 E-value=0.014 Score=44.72 Aligned_cols=102 Identities=19% Similarity=0.097 Sum_probs=65.0
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEE-EcCCCCCHHHHHHHHHHH
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWV-QEPYTCYADQILDIIIKF 119 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~~~~~~~~~~~l~~i~~~ 119 (157)
...|+|-... .++..++.......+.+.++|+.|+|||+-++..++. .+.+|+ ..+..++...++..+...
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s-------~p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS-------NPNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc-------CccceeecCChhhHHHHHHHHHHHH
Confidence 4556665443 2333444333333458899999999999999988872 234554 455666777777777766
Q ss_pred hCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeC
Q 045087 120 LMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDD 156 (157)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDd 156 (157)
+.... ..+.-+....+...+++..-+++.|+
T Consensus 143 ~~~~~------~~~~~d~~~~~~~~l~~~~~~iivDE 173 (297)
T COG2842 143 AFGAT------DGTINDLTERLMIRLRDTVRLIIVDE 173 (297)
T ss_pred Hhccc------chhHHHHHHHHHHHHccCcceeeeeh
Confidence 66533 23345566666666777777777775
No 436
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.68 E-value=0.0042 Score=45.02 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.+.+...+.++ .++..|.|.+|.||||++..+..
T Consensus 5 ~Q~~a~~~~l~~~---~~~~~l~G~aGtGKT~~l~~~~~ 40 (196)
T PF13604_consen 5 EQREAVRAILTSG---DRVSVLQGPAGTGKTTLLKALAE 40 (196)
T ss_dssp HHHHHHHHHHHCT---CSEEEEEESTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CeEEEEEECCCCCHHHHHHHHHH
Confidence 3445555555443 35788899999999999988876
No 437
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.67 E-value=0.0012 Score=46.36 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++++|+|+.++|||||..++..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 46899999999999999999855
No 438
>PRK08356 hypothetical protein; Provisional
Probab=96.67 E-value=0.0019 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=19.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEA 85 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v 85 (157)
..++.|+|++|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999988
No 439
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.66 E-value=0.002 Score=43.42 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|..|+|||||.+.++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 358999999999999999999774
No 440
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.66 E-value=0.0017 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|+|+|+.|+||||+|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999997655
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0032 Score=46.38 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+++|+|++|.|||||.+.+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 346999999999999999998855
No 442
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=96.66 E-value=0.0066 Score=50.11 Aligned_cols=90 Identities=19% Similarity=0.101 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYEMK 137 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~ 137 (157)
+...++|.|..|+|||+|| ..+.+. . .-+. ++++.+++..+ ..++++.+...=...... ...+....+..
T Consensus 161 rGQr~~Ifg~~g~GKt~lal~~i~~~--~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~ 236 (502)
T PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQY 236 (502)
T ss_pred cCcEEEeecCCCCCchHHHHHHHHHh--c--CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHH
Confidence 4567899999999999995 555542 2 2344 47788877654 556666665432111100 00111122211
Q ss_pred -----HHHHHHHh--cCCcEEEEeeCC
Q 045087 138 -----KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 138 -----~~~l~~~L--~~kr~LlVlDdV 157 (157)
...+.+++ +++.+|||+||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~~VLli~Ddl 263 (502)
T PRK09281 237 LAPYAGCAMGEYFMDNGKDALIVYDDL 263 (502)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 22233343 488999999996
No 443
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.65 E-value=0.0017 Score=46.34 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|+|.+|.|||||++.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 444
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0046 Score=46.80 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=34.6
Q ss_pred CccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 43 DTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
++-|.+-+.+++.+.+.-. -+..+-+.++|++|.|||.||+++.++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 4667777777777665321 134567889999999999999999995
No 445
>PRK13976 thymidylate kinase; Provisional
Probab=96.65 E-value=0.0065 Score=44.56 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccccc
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMKH 93 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~~ 93 (157)
.|+|-|.-|+||||+++.+++ ..+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~--~L~~ 26 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAE--YLSD 26 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHH
Confidence 578899999999999999998 4444
No 446
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=96.64 E-value=0.006 Score=50.28 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=52.5
Q ss_pred CceEEEEEeCCCCcHHHHH-HHHhcCcccccccCe-eEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDC-HAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYEMK 137 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~ 137 (157)
+...++|.|..|+|||+|| ..+.+. ..-+. ++++.+++..+ ..++++.+...=...... ...+.....+.
T Consensus 161 rGQR~~I~g~~g~GKt~Lal~~i~~~----~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~ 236 (502)
T PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQ----KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQY 236 (502)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHhh----cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHH
Confidence 4567899999999999996 666652 22344 47778877654 566666665432111100 00111122221
Q ss_pred -----HHHHHHHh--cCCcEEEEeeCC
Q 045087 138 -----KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 138 -----~~~l~~~L--~~kr~LlVlDdV 157 (157)
...+.+++ +++.+|||+||+
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (502)
T PRK13343 237 LAPFAGCAIAEYFRDQGQDALIVYDDL 263 (502)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 12344454 688999999995
No 447
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.64 E-value=0.0017 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.++|.+|+||||+|+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788899999999999998876
No 448
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0047 Score=46.68 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 46 GLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
|.+.+++++.+.+.-. -.+.+-+.++|++|.|||-||++++++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 4688888888876422 134567889999999999999999994
No 449
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.64 E-value=0.0021 Score=42.18 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHhcC
Q 045087 68 VTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~~ 88 (157)
|+|+|++|+|||||...++..
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0018 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-.++|+|.+|+|||||.+.+..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999855
No 451
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.63 E-value=0.0025 Score=45.63 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.+++.|+|++|+||+||+..+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999883
No 452
>PTZ00494 tuzin-like protein; Provisional
Probab=96.62 E-value=0.03 Score=45.85 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=57.2
Q ss_pred CCCCCCccccHHHHHHHHHHHhc-CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
......++.|+.+-.-+...|.. +....+++.+.|..|.||++|.+...+... -..+||.+... ++-+..+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHH
Confidence 35667899998887777777754 345678999999999999999987776322 24667776654 3456677
Q ss_pred HHHhCCCC
Q 045087 117 IKFLMPSS 124 (157)
Q Consensus 117 ~~~l~~~~ 124 (157)
...++.+.
T Consensus 439 VKALgV~n 446 (664)
T PTZ00494 439 VRALGVSN 446 (664)
T ss_pred HHHhCCCC
Confidence 77777654
No 453
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.62 E-value=0.0028 Score=50.35 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHY 94 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 94 (157)
+..++.|+|..|+|||||+..+.. ..+.+
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~--~l~~~ 32 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVR--RLSER 32 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH--HHhhC
Confidence 356999999999999999999987 44433
No 454
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.61 E-value=0.0022 Score=48.88 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=24.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccC
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFD 96 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 96 (157)
++...|.++||.|.||||..++++.+ +...+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ 48 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKT 48 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccC
Confidence 34567778899999999999999884 444443
No 455
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.61 E-value=0.0021 Score=46.81 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.++++++|..|+|||||..++.+
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999998877
No 456
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.60 E-value=0.0039 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|..|.|||||++.++.-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999773
No 457
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.59 E-value=0.02 Score=40.02 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=17.5
Q ss_pred eEEEEEeCCCCcHHH-HHHHHhc
Q 045087 66 SAVTILDSIGLDKTA-FAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTt-La~~v~~ 87 (157)
..+.|.|..|.|||+ ++..+++
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~ 47 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALE 47 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHH
Confidence 578899999999999 5555555
No 458
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.59 E-value=0.0095 Score=39.58 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
+.+.|.||+||||++..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998877
No 459
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.59 E-value=0.004 Score=48.31 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....|.++|++|+||||+++.+..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~ 155 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAA 155 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999877
No 460
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.59 E-value=0.0016 Score=45.56 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.|+|+.|+|||||+.++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 461
>PRK14531 adenylate kinase; Provisional
Probab=96.57 E-value=0.002 Score=46.09 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|+|++|.||||+++.+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998877
No 462
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.57 E-value=0.0016 Score=46.42 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 463
>PLN02796 D-glycerate 3-kinase
Probab=96.57 E-value=0.007 Score=47.62 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..-+++|.|..|+|||||++.+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 457899999999999999999987
No 464
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.56 E-value=0.0025 Score=48.71 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
++++|+|.+|+|||||+..+.. .++++.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC
Confidence 5799999999999999999988 554443
No 465
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.56 E-value=0.0025 Score=47.72 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.6
Q ss_pred EEeCCCCcHHHHHHHHhcC
Q 045087 70 ILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 70 I~G~gGiGKTtLa~~v~~~ 88 (157)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999999884
No 466
>PRK09165 replicative DNA helicase; Provisional
Probab=96.56 E-value=0.025 Score=46.86 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..-...|-+++ .+-....++.|-|.+|+|||++|..+..
T Consensus 201 ~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~ 239 (497)
T PRK09165 201 STGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAF 239 (497)
T ss_pred cCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHH
Confidence 33344444433 2334456888899999999999977655
No 467
>PF13245 AAA_19: Part of AAA domain
Probab=96.56 E-value=0.0052 Score=37.70 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=16.7
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHhc
Q 045087 65 LSAVTILDSIGLDKTAFA-AEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa-~~v~~ 87 (157)
.+++.|.|.+|.|||+++ ..+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346778999999999544 55444
No 468
>PRK01184 hypothetical protein; Provisional
Probab=96.55 E-value=0.0022 Score=45.69 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 478999999999999987 444
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.55 E-value=0.0057 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+.|+|..|.||||+++.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 470
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.55 E-value=0.0068 Score=42.08 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 46 GLDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
|.+.-++.|.+.+.... .....++++|++|+|||||...+..+.
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 44444555554432111 124567899999999999999998753
No 471
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.55 E-value=0.0044 Score=45.29 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|..|.|||||++.++.-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999763
No 472
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.54 E-value=0.017 Score=43.01 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=18.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567889999999999988865
No 473
>PRK13768 GTPase; Provisional
Probab=96.54 E-value=0.0038 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|.|.+|+||||++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 5788999999999999877765
No 474
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.53 E-value=0.0027 Score=45.32 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.|.|.+|.||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 475
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0054 Score=47.29 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=36.2
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++=|.+.++++|.+-+.-. -...+-|-+||.+|.|||-||++|++
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc
Confidence 45667899999998877432 12345677899999999999999999
No 476
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.02 Score=43.68 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++++|.+|+||||++..+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46999999999999999987765
No 477
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0049 Score=47.76 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=24.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
....++|||++|.|||-+|+.|+. .+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa--~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAA--TMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHH--hcCCce
Confidence 356899999999999999999998 554444
No 478
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.52 E-value=0.0034 Score=49.41 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+.|.|..|.||||++..+.+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998877
No 479
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.52 E-value=0.0071 Score=47.38 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcC-cccccccCeeEEEEcCCCC-CHHHHHHH
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSS-NYMKHYFDCHAWVQEPYTC-YADQILDI 115 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~~~~-~~~~~l~~ 115 (157)
+...++|..++...|-.|+... -+...-+.|+|+.|.|||+|......+ .++.++| .-+...... +..-.++.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 3467899999999999988541 112345788999999999998777664 2233333 233333322 23345666
Q ss_pred HHHHhCCCCCCcccccccHHHHHHHHHHHhcC------CcEEEEeeC
Q 045087 116 IIKFLMPSSRLSEIKDKNYEMKKIILHEYLMT------KRYLIVIDD 156 (157)
Q Consensus 116 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVlDd 156 (157)
|.+++............+..+-+..|-..|.. -++++|+|+
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldE 145 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDE 145 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeeh
Confidence 66666542211112233334444444444432 247888875
No 480
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.51 E-value=0.0023 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|+|+|.+|+|||||+..+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988764
No 481
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.51 E-value=0.0029 Score=43.19 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998764
No 482
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.0023 Score=45.67 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHY 94 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 94 (157)
+..++=++|.+|.||||+|.+++. ++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~--~L~~~ 50 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE--KLFAK 50 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH--HHHHc
Confidence 456788889999999999999988 55443
No 483
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.50 E-value=0.011 Score=49.37 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...++|....++++.+.+..-......|.|+|.+|+||+++|+.+++.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999988887543223457889999999999999999874
No 484
>PRK13695 putative NTPase; Provisional
Probab=96.50 E-value=0.0025 Score=45.08 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.|+|.+|+|||||++.+++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 485
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.50 E-value=0.0088 Score=47.47 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+.|.|.||.|||+|.+++.+
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~ 44 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIID 44 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Confidence 346889999999999999999887
No 486
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.50 E-value=0.0021 Score=51.62 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-.+.|+|+|.+|.|||||++++.+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998873
No 487
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.50 E-value=0.0049 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999763
No 488
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.49 E-value=0.0052 Score=44.00 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|..|.|||||.+.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999763
No 489
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0052 Score=44.69 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.49 E-value=0.0026 Score=43.88 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+.+.++|..|+|||||++.+...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 35789999999999999999774
No 491
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.47 E-value=0.0025 Score=43.92 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhcC
Q 045087 68 VTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~~ 88 (157)
|.++|.+|+|||||+.++...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999988764
No 492
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.47 E-value=0.0022 Score=39.98 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999988877
No 493
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0024 Score=45.29 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
+-|.++||.|+||||+.+.+.. .+.-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3578999999999999999977 444344
No 494
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.47 E-value=0.0025 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|.|+|.+|+|||||+.++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788999999999999988764
No 495
>PRK05748 replicative DNA helicase; Provisional
Probab=96.47 E-value=0.027 Score=45.91 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=34.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL 120 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l 120 (157)
....++.|-|.+|+|||++|..+..+...+.. ..++|+++. .+..++...++...
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g-~~v~~fSlE--ms~~~l~~R~l~~~ 255 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTD-KNVAIFSLE--MGAESLVMRMLCAE 255 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCC-CeEEEEeCC--CCHHHHHHHHHHHh
Confidence 44568889999999999999888763222222 244555533 35556666665443
No 496
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.005 Score=45.13 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 497
>PRK02496 adk adenylate kinase; Provisional
Probab=96.46 E-value=0.0027 Score=45.22 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.|.|++|+||||+|+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998876
No 498
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.45 E-value=0.0029 Score=44.46 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+++.|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 499
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.45 E-value=0.0026 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...++|+|.+|+|||||...+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
No 500
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.45 E-value=0.0028 Score=42.68 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCc
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
-|+++|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987754
Done!