Query 045087
Match_columns 157
No_of_seqs 181 out of 1303
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 9.6E-23 3.3E-27 166.7 16.4 113 45-157 131-252 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.8 3.6E-19 1.2E-23 155.3 13.4 119 39-157 121-245 (1249)
3 1vt4_I APAF-1 related killer D 99.8 2E-18 6.9E-23 148.2 10.9 113 44-157 130-253 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 2.9E-18 9.8E-23 140.7 11.3 118 39-157 121-245 (591)
5 1w5s_A Origin recognition comp 99.5 2E-13 6.7E-18 107.0 12.0 114 39-157 19-147 (412)
6 2v1u_A Cell division control p 99.5 9.3E-13 3.2E-17 102.0 12.3 114 39-157 16-139 (387)
7 2qby_B CDC6 homolog 3, cell di 99.4 1.1E-12 3.7E-17 101.9 11.2 113 41-157 19-142 (384)
8 1fnn_A CDC6P, cell division co 99.4 8.4E-12 2.9E-16 96.9 14.7 113 40-157 15-134 (389)
9 2qby_A CDC6 homolog 1, cell di 99.4 6.6E-13 2.3E-17 102.7 8.2 115 38-157 16-137 (386)
10 2qen_A Walker-type ATPase; unk 99.3 3.3E-12 1.1E-16 97.7 8.6 108 39-157 9-137 (350)
11 2fna_A Conserved hypothetical 99.2 5.5E-11 1.9E-15 91.0 9.8 107 39-157 10-146 (357)
12 3te6_A Regulatory protein SIR3 99.1 3.7E-10 1.3E-14 86.5 10.9 111 42-157 20-141 (318)
13 1jbk_A CLPB protein; beta barr 99.0 3.1E-09 1E-13 74.0 9.2 45 41-87 21-65 (195)
14 2chg_A Replication factor C sm 99.0 9.6E-09 3.3E-13 73.1 11.4 45 41-87 16-60 (226)
15 1njg_A DNA polymerase III subu 98.9 1.2E-08 3.9E-13 73.4 9.4 46 41-87 22-67 (250)
16 2p65_A Hypothetical protein PF 98.8 9.4E-09 3.2E-13 71.4 6.4 45 41-87 21-65 (187)
17 1sxj_B Activator 1 37 kDa subu 98.7 3.7E-08 1.3E-12 74.4 8.3 45 41-87 20-64 (323)
18 3h4m_A Proteasome-activating n 98.7 4.5E-08 1.5E-12 73.1 6.7 49 39-87 14-73 (285)
19 2w58_A DNAI, primosome compone 98.6 2.2E-07 7.5E-12 65.9 8.1 61 41-103 24-90 (202)
20 2qz4_A Paraplegin; AAA+, SPG7, 98.6 4.3E-07 1.5E-11 66.7 9.4 48 40-87 4-61 (262)
21 1iqp_A RFCS; clamp loader, ext 98.5 1.4E-07 4.7E-12 71.3 6.4 45 41-87 24-68 (327)
22 3eie_A Vacuolar protein sortin 98.5 4.1E-07 1.4E-11 69.4 8.1 48 40-87 16-73 (322)
23 3cf0_A Transitional endoplasmi 98.5 8.2E-07 2.8E-11 67.1 9.4 48 40-87 13-71 (301)
24 3b9p_A CG5977-PA, isoform A; A 98.5 9.9E-07 3.4E-11 66.2 9.4 48 40-87 19-76 (297)
25 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.1E-06 7.1E-11 65.6 11.1 48 40-87 10-67 (322)
26 1sxj_A Activator 1 95 kDa subu 98.4 1E-06 3.5E-11 71.4 9.3 48 40-87 37-99 (516)
27 2cvh_A DNA repair and recombin 98.4 3.1E-06 1.1E-10 60.4 10.7 99 53-157 8-114 (220)
28 3u61_B DNA polymerase accessor 98.4 2E-06 6.7E-11 65.4 9.8 47 40-87 24-70 (324)
29 2z4s_A Chromosomal replication 98.4 1.3E-06 4.5E-11 69.5 9.1 51 42-95 105-158 (440)
30 3d8b_A Fidgetin-like protein 1 98.4 8.6E-07 2.9E-11 68.7 7.8 48 40-87 82-139 (357)
31 1lv7_A FTSH; alpha/beta domain 98.4 1.9E-06 6.5E-11 63.4 9.3 48 40-87 10-67 (257)
32 3uk6_A RUVB-like 2; hexameric 98.4 3.9E-06 1.3E-10 64.6 11.4 47 41-87 43-92 (368)
33 1l8q_A Chromosomal replication 98.4 2.5E-06 8.4E-11 64.9 9.6 47 41-87 10-59 (324)
34 3pfi_A Holliday junction ATP-d 98.4 1.2E-06 4E-11 66.9 7.8 48 40-87 27-77 (338)
35 1jr3_A DNA polymerase III subu 98.4 2.2E-06 7.5E-11 66.0 9.4 46 41-87 15-60 (373)
36 1hqc_A RUVB; extended AAA-ATPa 98.4 4.5E-07 1.5E-11 68.7 5.3 69 40-113 10-81 (324)
37 3syl_A Protein CBBX; photosynt 98.3 1E-06 3.5E-11 66.3 6.9 45 43-87 32-89 (309)
38 3ec2_A DNA replication protein 98.3 1E-06 3.5E-11 61.4 6.2 41 47-87 19-60 (180)
39 3pvs_A Replication-associated 98.3 3.3E-06 1.1E-10 67.4 9.5 46 40-87 24-72 (447)
40 2qp9_X Vacuolar protein sortin 98.3 1.4E-06 4.7E-11 67.5 7.0 48 40-87 49-106 (355)
41 4b4t_L 26S protease subunit RP 98.3 4.7E-06 1.6E-10 66.3 10.0 52 42-95 181-243 (437)
42 1qvr_A CLPB protein; coiled co 98.3 2.1E-06 7E-11 73.6 8.4 45 41-87 169-213 (854)
43 3vfd_A Spastin; ATPase, microt 98.3 3.9E-06 1.3E-10 65.6 9.4 48 40-87 113-170 (389)
44 2chq_A Replication factor C sm 98.3 1.3E-06 4.5E-11 65.6 5.8 45 41-87 16-60 (319)
45 2zan_A Vacuolar protein sortin 98.2 2.9E-06 1E-10 67.6 7.9 48 40-87 132-189 (444)
46 3n70_A Transport activator; si 98.2 1.7E-06 5.9E-11 58.4 5.4 46 43-88 2-47 (145)
47 2c9o_A RUVB-like 1; hexameric 98.2 4.1E-06 1.4E-10 66.9 8.3 48 40-87 35-85 (456)
48 1d2n_A N-ethylmaleimide-sensit 98.2 5.7E-06 1.9E-10 61.3 8.4 47 41-87 32-86 (272)
49 4b4t_J 26S protease regulatory 98.2 2.4E-06 8.3E-11 67.2 6.5 52 42-95 148-210 (405)
50 3hu3_A Transitional endoplasmi 98.2 3.6E-06 1.2E-10 67.9 7.5 46 42-87 204-260 (489)
51 4b4t_H 26S protease regulatory 98.2 3.5E-06 1.2E-10 67.3 7.3 52 42-95 209-271 (467)
52 4b4t_K 26S protease regulatory 98.2 3.9E-06 1.3E-10 66.6 7.5 52 42-95 172-234 (428)
53 3hr8_A Protein RECA; alpha and 98.2 9.9E-06 3.4E-10 62.8 9.5 99 52-157 47-148 (356)
54 1r6b_X CLPA protein; AAA+, N-t 98.2 1.1E-05 3.8E-10 68.0 10.2 45 41-87 185-229 (758)
55 4b4t_M 26S protease regulatory 98.2 3.3E-06 1.1E-10 67.2 6.5 53 41-95 180-243 (434)
56 2ce7_A Cell division protein F 98.1 1.1E-05 3.7E-10 64.9 9.0 48 40-87 14-71 (476)
57 2z43_A DNA repair and recombin 98.1 1.4E-05 4.9E-10 61.0 9.3 105 52-157 94-212 (324)
58 1v5w_A DMC1, meiotic recombina 98.1 2.4E-05 8.1E-10 60.3 10.4 105 52-157 109-228 (343)
59 2vhj_A Ntpase P4, P4; non- hyd 98.1 4E-06 1.4E-10 64.2 5.9 68 64-157 122-191 (331)
60 2zr9_A Protein RECA, recombina 98.1 2.1E-05 7E-10 60.9 9.3 99 52-157 47-148 (349)
61 3bos_A Putative DNA replicatio 98.1 8.4E-06 2.9E-10 58.6 6.7 61 40-104 26-89 (242)
62 1xp8_A RECA protein, recombina 98.1 2.5E-05 8.5E-10 60.8 9.6 100 51-157 59-161 (366)
63 4fcw_A Chaperone protein CLPB; 98.1 3.2E-06 1.1E-10 63.6 4.5 62 42-105 17-85 (311)
64 1n0w_A DNA repair protein RAD5 98.1 3E-05 1E-09 56.0 9.5 104 53-157 12-128 (243)
65 3io5_A Recombination and repai 98.0 4.9E-05 1.7E-09 58.1 10.5 98 52-157 12-120 (333)
66 4b4t_I 26S protease regulatory 98.0 9.2E-06 3.2E-10 64.4 6.7 52 42-95 182-244 (437)
67 1ypw_A Transitional endoplasmi 98.0 8.8E-06 3E-10 69.3 7.1 47 41-87 203-260 (806)
68 1sxj_C Activator 1 40 kDa subu 98.0 1.1E-05 3.8E-10 61.7 7.0 45 41-87 24-68 (340)
69 2i1q_A DNA repair and recombin 98.0 2.2E-05 7.4E-10 59.8 8.5 105 52-157 85-213 (322)
70 3co5_A Putative two-component 98.0 1.5E-06 5E-11 58.7 1.7 47 42-88 4-50 (143)
71 3cf2_A TER ATPase, transitiona 98.0 3E-05 1E-09 66.0 9.7 52 41-94 203-265 (806)
72 2qgz_A Helicase loader, putati 98.0 9.5E-06 3.3E-10 61.7 5.9 54 48-103 134-189 (308)
73 2x8a_A Nuclear valosin-contain 98.0 6.8E-05 2.3E-09 55.9 10.4 47 40-87 8-66 (274)
74 3t15_A Ribulose bisphosphate c 98.0 7.2E-06 2.4E-10 61.8 4.9 24 64-87 35-58 (293)
75 3pxg_A Negative regulator of g 98.0 7.3E-06 2.5E-10 65.7 5.0 45 41-87 179-223 (468)
76 2bjv_A PSP operon transcriptio 97.9 1E-05 3.5E-10 59.6 5.1 47 42-88 6-52 (265)
77 2kjq_A DNAA-related protein; s 97.9 7.8E-06 2.7E-10 55.7 4.0 40 64-105 35-74 (149)
78 1sxj_D Activator 1 41 kDa subu 97.9 9.8E-06 3.3E-10 61.8 5.0 46 40-87 35-80 (353)
79 2dhr_A FTSH; AAA+ protein, hex 97.9 6.4E-05 2.2E-09 60.8 9.5 49 39-87 28-86 (499)
80 1u94_A RECA protein, recombina 97.9 5.4E-05 1.8E-09 58.7 8.7 100 51-157 48-150 (356)
81 2r44_A Uncharacterized protein 97.9 4E-05 1.4E-09 58.3 7.6 42 42-87 27-68 (331)
82 1ofh_A ATP-dependent HSL prote 97.9 8.4E-06 2.9E-10 61.0 3.4 46 42-87 15-72 (310)
83 3bh0_A DNAB-like replicative h 97.8 0.00015 5.2E-09 55.1 9.8 64 51-119 55-118 (315)
84 1in4_A RUVB, holliday junction 97.8 1.5E-05 5.1E-10 61.1 3.9 48 40-87 23-73 (334)
85 2r62_A Cell division protease 97.8 1.1E-05 3.9E-10 59.4 3.0 48 40-87 9-66 (268)
86 1ojl_A Transcriptional regulat 97.8 2.6E-05 9E-10 59.0 4.8 46 42-87 2-47 (304)
87 4a74_A DNA repair and recombin 97.8 0.00019 6.6E-09 51.2 9.2 48 63-110 23-74 (231)
88 3pxi_A Negative regulator of g 97.8 2.4E-05 8.3E-10 66.1 5.0 45 41-87 179-223 (758)
89 1pzn_A RAD51, DNA repair and r 97.8 0.00012 4E-09 56.6 8.4 104 53-157 119-240 (349)
90 1sxj_E Activator 1 40 kDa subu 97.8 2.3E-05 7.7E-10 60.0 4.4 45 41-87 13-58 (354)
91 1odf_A YGR205W, hypothetical 3 97.7 0.00042 1.4E-08 52.2 10.9 27 61-87 27-53 (290)
92 3hws_A ATP-dependent CLP prote 97.7 3.5E-05 1.2E-09 59.5 4.9 45 43-87 16-73 (363)
93 2gno_A DNA polymerase III, gam 97.7 0.00024 8.2E-09 53.9 9.1 40 46-87 1-40 (305)
94 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00018 6.1E-09 51.3 7.9 49 64-116 22-70 (235)
95 1rz3_A Hypothetical protein rb 97.7 7.7E-05 2.6E-09 52.9 5.9 41 47-87 3-44 (201)
96 3lda_A DNA repair protein RAD5 97.7 0.00031 1.1E-08 55.2 9.8 105 52-157 165-282 (400)
97 3c8u_A Fructokinase; YP_612366 97.7 5E-05 1.7E-09 54.1 4.7 38 50-87 7-44 (208)
98 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 7.5E-05 2.6E-09 60.4 5.5 42 42-87 22-63 (500)
99 1ixz_A ATP-dependent metallopr 97.6 7.1E-05 2.4E-09 54.8 4.6 48 40-87 14-71 (254)
100 3m6a_A ATP-dependent protease 97.5 0.00018 6E-09 58.8 6.9 45 43-87 82-130 (543)
101 1um8_A ATP-dependent CLP prote 97.5 9.8E-05 3.3E-09 57.2 5.0 46 42-87 21-94 (376)
102 1qhx_A CPT, protein (chloramph 97.5 5E-05 1.7E-09 52.4 3.0 22 66-87 4-25 (178)
103 2b8t_A Thymidine kinase; deoxy 97.5 3.6E-05 1.2E-09 55.9 2.3 87 64-157 11-98 (223)
104 3cmu_A Protein RECA, recombina 97.5 0.00038 1.3E-08 64.2 9.2 98 53-157 1414-1514(2050)
105 2dr3_A UPF0273 protein PH0284; 97.5 0.00083 2.8E-08 48.4 9.4 49 64-116 22-70 (247)
106 1q57_A DNA primase/helicase; d 97.5 0.0014 4.7E-08 52.8 11.5 91 63-157 240-363 (503)
107 3lw7_A Adenylate kinase relate 97.5 5.9E-05 2E-09 51.4 3.1 20 66-85 2-21 (179)
108 1a5t_A Delta prime, HOLB; zinc 97.5 0.00083 2.8E-08 51.3 9.8 39 48-87 8-46 (334)
109 3kl4_A SRP54, signal recogniti 97.5 0.00054 1.8E-08 54.4 8.9 24 64-87 96-119 (433)
110 4a1f_A DNAB helicase, replicat 97.5 0.00055 1.9E-08 52.7 8.7 100 52-156 34-164 (338)
111 2px0_A Flagellar biosynthesis 97.5 0.00052 1.8E-08 51.8 8.4 24 64-87 104-127 (296)
112 1fx0_B ATP synthase beta chain 97.5 0.00043 1.5E-08 55.7 8.0 92 64-157 164-275 (498)
113 1sky_E F1-ATPase, F1-ATP synth 97.4 0.00024 8.2E-09 56.9 6.3 51 66-118 152-204 (473)
114 1iy2_A ATP-dependent metallopr 97.4 0.00013 4.5E-09 54.1 4.5 49 39-87 37-95 (278)
115 1zp6_A Hypothetical protein AT 97.4 0.00011 3.8E-09 51.2 3.9 24 65-88 9-32 (191)
116 2q6t_A DNAB replication FORK h 97.4 0.0014 4.7E-08 52.1 10.6 64 52-119 188-251 (444)
117 1vma_A Cell division protein F 97.4 0.00066 2.3E-08 51.5 8.3 38 50-87 83-126 (306)
118 2ck3_D ATP synthase subunit be 97.4 0.00034 1.2E-08 56.1 7.0 53 65-119 153-207 (482)
119 2xxa_A Signal recognition part 97.4 0.0082 2.8E-07 47.6 14.9 38 50-87 78-122 (433)
120 3kb2_A SPBC2 prophage-derived 97.4 7.2E-05 2.5E-09 51.1 2.7 22 66-87 2-23 (173)
121 3dm5_A SRP54, signal recogniti 97.4 0.00087 3E-08 53.4 9.2 24 64-87 99-122 (443)
122 1g8p_A Magnesium-chelatase 38 97.4 8.3E-05 2.8E-09 56.6 3.1 46 40-87 22-67 (350)
123 1ly1_A Polynucleotide kinase; 97.4 0.0001 3.6E-09 50.6 3.2 22 66-87 3-24 (181)
124 3cf2_A TER ATPase, transitiona 97.4 0.0004 1.4E-08 59.1 7.2 48 40-87 475-533 (806)
125 3bgw_A DNAB-like replicative h 97.4 0.0013 4.4E-08 52.4 9.7 62 52-118 185-246 (444)
126 3vaa_A Shikimate kinase, SK; s 97.4 0.0001 3.4E-09 52.1 2.9 23 65-87 25-47 (199)
127 3e70_C DPA, signal recognition 97.4 0.0015 5.2E-08 50.0 9.6 24 64-87 128-151 (328)
128 2r6a_A DNAB helicase, replicat 97.3 0.001 3.6E-08 52.9 9.0 52 63-117 201-252 (454)
129 3trf_A Shikimate kinase, SK; a 97.3 0.00011 3.8E-09 51.0 2.8 23 65-87 5-27 (185)
130 2rhm_A Putative kinase; P-loop 97.3 0.00016 5.4E-09 50.4 3.6 23 65-87 5-27 (193)
131 1g41_A Heat shock protein HSLU 97.3 0.00026 9E-09 56.4 5.2 46 42-87 15-72 (444)
132 1nks_A Adenylate kinase; therm 97.3 0.00014 4.9E-09 50.4 3.3 22 66-87 2-23 (194)
133 3uie_A Adenylyl-sulfate kinase 97.3 0.00016 5.4E-09 51.1 3.5 24 64-87 24-47 (200)
134 1kag_A SKI, shikimate kinase I 97.3 0.0001 3.6E-09 50.5 2.3 22 66-87 5-26 (173)
135 3tlx_A Adenylate kinase 2; str 97.3 0.00027 9.1E-09 51.7 4.6 40 48-87 12-51 (243)
136 1kgd_A CASK, peripheral plasma 97.3 0.00015 5.3E-09 50.4 3.1 23 65-87 5-27 (180)
137 2plr_A DTMP kinase, probable t 97.3 0.00049 1.7E-08 48.4 5.7 23 65-87 4-26 (213)
138 3pxi_A Negative regulator of g 97.2 0.00038 1.3E-08 58.8 5.7 46 42-87 491-543 (758)
139 1knq_A Gluconate kinase; ALFA/ 97.2 0.00026 8.8E-09 48.7 3.9 24 64-87 7-30 (175)
140 1uj2_A Uridine-cytidine kinase 97.2 0.00019 6.5E-09 52.6 3.4 25 63-87 20-44 (252)
141 1kht_A Adenylate kinase; phosp 97.2 0.00017 5.7E-09 50.1 2.9 22 66-87 4-25 (192)
142 3cmu_A Protein RECA, recombina 97.2 0.0013 4.3E-08 60.9 9.2 101 50-157 367-470 (2050)
143 3t61_A Gluconokinase; PSI-biol 97.2 0.00013 4.6E-09 51.4 2.3 23 65-87 18-40 (202)
144 4eun_A Thermoresistant glucoki 97.2 0.0002 6.7E-09 50.6 3.1 23 65-87 29-51 (200)
145 3cmw_A Protein RECA, recombina 97.2 0.0011 3.7E-08 60.5 8.4 99 52-157 369-470 (1706)
146 1y63_A LMAJ004144AAA protein; 97.2 0.00023 7.8E-09 49.7 3.3 24 64-87 9-32 (184)
147 3iij_A Coilin-interacting nucl 97.2 0.00016 5.6E-09 50.0 2.5 23 65-87 11-33 (180)
148 3tr0_A Guanylate kinase, GMP k 97.2 0.00025 8.5E-09 49.9 3.4 23 65-87 7-29 (205)
149 2c95_A Adenylate kinase 1; tra 97.2 0.00024 8.1E-09 49.6 3.3 23 65-87 9-31 (196)
150 2qt1_A Nicotinamide riboside k 97.2 0.0003 1E-08 49.7 3.9 24 64-87 20-43 (207)
151 2jaq_A Deoxyguanosine kinase; 97.2 0.0002 6.9E-09 50.1 2.9 21 67-87 2-22 (205)
152 1tev_A UMP-CMP kinase; ploop, 97.2 0.00023 8E-09 49.4 3.2 23 65-87 3-25 (196)
153 3ice_A Transcription terminati 97.2 0.00018 6.3E-09 56.4 2.8 42 64-107 173-216 (422)
154 1uf9_A TT1252 protein; P-loop, 97.2 0.00028 9.7E-09 49.4 3.6 24 64-87 7-30 (203)
155 2j41_A Guanylate kinase; GMP, 97.2 0.00025 8.5E-09 49.9 3.3 23 65-87 6-28 (207)
156 3tau_A Guanylate kinase, GMP k 97.2 0.00025 8.5E-09 50.5 3.2 23 65-87 8-30 (208)
157 2qor_A Guanylate kinase; phosp 97.2 0.00019 6.3E-09 50.9 2.5 23 65-87 12-34 (204)
158 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00034 1.2E-08 54.2 4.1 43 45-87 2-46 (359)
159 1zuh_A Shikimate kinase; alpha 97.2 0.00023 7.8E-09 48.7 2.9 24 64-87 6-29 (168)
160 4gp7_A Metallophosphoesterase; 97.1 0.00031 1.1E-08 48.5 3.5 23 65-87 9-31 (171)
161 1ukz_A Uridylate kinase; trans 97.1 0.0003 1E-08 49.5 3.5 24 64-87 14-37 (203)
162 2ffh_A Protein (FFH); SRP54, s 97.1 0.0024 8.3E-08 50.6 8.9 24 64-87 97-120 (425)
163 1gvn_B Zeta; postsegregational 97.1 0.0006 2.1E-08 51.1 5.2 24 64-87 32-55 (287)
164 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00028 9.6E-09 52.0 3.3 23 65-87 4-26 (260)
165 2bdt_A BH3686; alpha-beta prot 97.1 0.00031 1.1E-08 49.0 3.4 22 66-87 3-24 (189)
166 3asz_A Uridine kinase; cytidin 97.1 0.00034 1.2E-08 49.5 3.7 24 64-87 5-28 (211)
167 1ex7_A Guanylate kinase; subst 97.1 0.00018 6.2E-09 50.8 2.2 22 66-87 2-23 (186)
168 1nn5_A Similar to deoxythymidy 97.1 0.00079 2.7E-08 47.5 5.6 23 65-87 9-31 (215)
169 2yhs_A FTSY, cell division pro 97.1 0.0056 1.9E-07 49.4 11.0 24 64-87 292-315 (503)
170 2ze6_A Isopentenyl transferase 97.1 0.00027 9.3E-09 52.0 3.2 22 66-87 2-23 (253)
171 3cm0_A Adenylate kinase; ATP-b 97.1 0.00031 1.1E-08 48.6 3.3 23 65-87 4-26 (186)
172 3tqc_A Pantothenate kinase; bi 97.1 0.0007 2.4E-08 51.7 5.5 42 46-87 71-114 (321)
173 2z0h_A DTMP kinase, thymidylat 97.1 0.00078 2.7E-08 46.9 5.3 21 67-87 2-22 (197)
174 3p32_A Probable GTPase RV1496/ 97.1 0.00074 2.5E-08 52.1 5.6 37 51-87 65-101 (355)
175 2iyv_A Shikimate kinase, SK; t 97.1 0.00019 6.6E-09 49.7 2.1 22 66-87 3-24 (184)
176 2yvu_A Probable adenylyl-sulfa 97.1 0.00035 1.2E-08 48.6 3.4 24 64-87 12-35 (186)
177 3k1j_A LON protease, ATP-depen 97.1 0.00098 3.4E-08 55.0 6.6 42 42-87 41-82 (604)
178 2bwj_A Adenylate kinase 5; pho 97.1 0.00029 9.9E-09 49.2 3.0 23 65-87 12-34 (199)
179 2hf9_A Probable hydrogenase ni 97.1 0.00075 2.6E-08 48.1 5.3 36 50-87 25-60 (226)
180 2if2_A Dephospho-COA kinase; a 97.1 0.0003 1E-08 49.6 3.1 22 66-87 2-23 (204)
181 1jjv_A Dephospho-COA kinase; P 97.1 0.00035 1.2E-08 49.3 3.5 22 66-87 3-24 (206)
182 1cke_A CK, MSSA, protein (cyti 97.1 0.00028 9.6E-09 50.4 3.0 22 66-87 6-27 (227)
183 1qf9_A UMP/CMP kinase, protein 97.1 0.00034 1.2E-08 48.5 3.3 23 65-87 6-28 (194)
184 2wsm_A Hydrogenase expression/ 97.1 0.00052 1.8E-08 48.8 4.3 40 46-87 13-52 (221)
185 3vr4_D V-type sodium ATPase su 97.1 0.00033 1.1E-08 55.9 3.5 90 66-157 152-257 (465)
186 3zvl_A Bifunctional polynucleo 97.1 0.0013 4.3E-08 51.9 6.8 24 64-87 257-280 (416)
187 2vli_A Antibiotic resistance p 97.1 0.00019 6.3E-09 49.6 1.8 23 65-87 5-27 (183)
188 1zu4_A FTSY; GTPase, signal re 97.1 0.0034 1.2E-07 47.8 8.9 24 64-87 104-127 (320)
189 1via_A Shikimate kinase; struc 97.1 0.0003 1E-08 48.5 2.7 21 67-87 6-26 (175)
190 1ypw_A Transitional endoplasmi 97.1 0.00013 4.5E-09 62.2 1.0 48 40-87 475-533 (806)
191 2j37_W Signal recognition part 97.1 0.0049 1.7E-07 49.9 10.1 24 64-87 100-123 (504)
192 3hjn_A DTMP kinase, thymidylat 97.1 0.0012 4E-08 46.8 5.9 85 67-155 2-88 (197)
193 1ls1_A Signal recognition part 97.1 0.0028 9.5E-08 47.7 8.2 24 64-87 97-120 (295)
194 1j8m_F SRP54, signal recogniti 97.1 0.0069 2.4E-07 45.6 10.4 23 65-87 98-120 (297)
195 1e6c_A Shikimate kinase; phosp 97.0 0.00026 8.8E-09 48.4 2.3 22 66-87 3-24 (173)
196 2wwf_A Thymidilate kinase, put 97.0 0.00037 1.3E-08 49.2 3.2 23 65-87 10-32 (212)
197 2cdn_A Adenylate kinase; phosp 97.0 0.0004 1.4E-08 48.9 3.3 23 65-87 20-42 (201)
198 3a00_A Guanylate kinase, GMP k 97.0 0.00029 9.8E-09 49.2 2.5 22 66-87 2-23 (186)
199 2pbr_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 48.4 2.9 21 67-87 2-22 (195)
200 2bbw_A Adenylate kinase 4, AK4 97.0 0.00041 1.4E-08 50.5 3.3 22 65-86 27-48 (246)
201 2pt5_A Shikimate kinase, SK; a 97.0 0.00039 1.3E-08 47.3 2.9 21 67-87 2-22 (168)
202 1aky_A Adenylate kinase; ATP:A 97.0 0.0004 1.4E-08 49.7 3.1 23 65-87 4-26 (220)
203 2p5t_B PEZT; postsegregational 97.0 0.0007 2.4E-08 49.6 4.4 25 63-87 30-54 (253)
204 1ye8_A Protein THEP1, hypothet 97.0 0.00046 1.6E-08 48.2 3.2 21 67-87 2-22 (178)
205 2grj_A Dephospho-COA kinase; T 97.0 0.00053 1.8E-08 48.5 3.5 25 63-87 10-34 (192)
206 2pez_A Bifunctional 3'-phospho 97.0 0.00051 1.8E-08 47.4 3.3 24 64-87 4-27 (179)
207 1zd8_A GTP:AMP phosphotransfer 97.0 0.00044 1.5E-08 49.7 3.1 23 65-87 7-29 (227)
208 1tue_A Replication protein E1; 97.0 0.00071 2.4E-08 48.6 4.0 37 50-87 44-80 (212)
209 1lvg_A Guanylate kinase, GMP k 97.0 0.00037 1.3E-08 49.3 2.5 22 66-87 5-26 (198)
210 2v54_A DTMP kinase, thymidylat 96.9 0.00049 1.7E-08 48.3 3.1 23 65-87 4-26 (204)
211 3umf_A Adenylate kinase; rossm 96.9 0.0006 2E-08 49.2 3.5 25 63-87 27-51 (217)
212 3ney_A 55 kDa erythrocyte memb 96.9 0.00053 1.8E-08 48.8 3.1 24 64-87 18-41 (197)
213 3aez_A Pantothenate kinase; tr 96.9 0.00063 2.2E-08 51.7 3.7 25 63-87 88-112 (312)
214 1gtv_A TMK, thymidylate kinase 96.9 0.00026 8.8E-09 50.1 1.4 21 67-87 2-22 (214)
215 1xjc_A MOBB protein homolog; s 96.9 0.00054 1.8E-08 47.6 3.0 24 64-87 3-26 (169)
216 1znw_A Guanylate kinase, GMP k 96.9 0.0006 2E-08 48.4 3.3 23 65-87 20-42 (207)
217 1m7g_A Adenylylsulfate kinase; 96.9 0.00065 2.2E-08 48.3 3.5 23 65-87 25-47 (211)
218 3fb4_A Adenylate kinase; psych 96.9 0.00053 1.8E-08 48.7 3.0 21 67-87 2-22 (216)
219 1zak_A Adenylate kinase; ATP:A 96.9 0.00049 1.7E-08 49.2 2.8 23 65-87 5-27 (222)
220 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0015 5.1E-08 55.1 6.1 46 42-87 458-510 (758)
221 4edh_A DTMP kinase, thymidylat 96.9 0.0029 9.9E-08 45.4 6.8 23 65-87 6-28 (213)
222 4e22_A Cytidylate kinase; P-lo 96.9 0.00063 2.2E-08 49.9 3.4 23 65-87 27-49 (252)
223 2f6r_A COA synthase, bifunctio 96.9 0.00071 2.4E-08 50.5 3.7 24 64-87 74-97 (281)
224 2jeo_A Uridine-cytidine kinase 96.9 0.00073 2.5E-08 49.2 3.7 24 64-87 24-47 (245)
225 1sq5_A Pantothenate kinase; P- 96.9 0.0018 6.1E-08 49.0 5.9 25 63-87 78-102 (308)
226 3dl0_A Adenylate kinase; phosp 96.9 0.00059 2E-08 48.5 3.0 21 67-87 2-22 (216)
227 2r9v_A ATP synthase subunit al 96.9 0.0017 5.7E-08 52.5 5.8 89 65-157 175-276 (515)
228 1z6g_A Guanylate kinase; struc 96.9 0.00055 1.9E-08 49.2 2.7 23 65-87 23-45 (218)
229 3be4_A Adenylate kinase; malar 96.8 0.00057 2E-08 48.8 2.8 23 65-87 5-27 (217)
230 1vht_A Dephospho-COA kinase; s 96.8 0.00079 2.7E-08 47.9 3.5 23 65-87 4-26 (218)
231 1s96_A Guanylate kinase, GMP k 96.8 0.00078 2.7E-08 48.6 3.3 23 65-87 16-38 (219)
232 3fwy_A Light-independent proto 96.8 0.00085 2.9E-08 51.0 3.6 24 64-87 47-70 (314)
233 1fx0_A ATP synthase alpha chai 96.8 0.0018 6.1E-08 52.3 5.4 87 65-157 163-264 (507)
234 4eaq_A DTMP kinase, thymidylat 96.8 0.002 6.8E-08 46.6 5.3 24 64-87 25-48 (229)
235 1cr0_A DNA primase/helicase; R 96.8 0.0035 1.2E-07 46.7 6.7 24 64-87 34-57 (296)
236 1qvr_A CLPB protein; coiled co 96.8 0.0022 7.6E-08 54.9 6.2 45 43-87 559-610 (854)
237 3ake_A Cytidylate kinase; CMP 96.8 0.00081 2.8E-08 47.2 3.0 21 67-87 4-24 (208)
238 3tif_A Uncharacterized ABC tra 96.8 0.0017 5.8E-08 47.3 4.7 23 65-87 31-53 (235)
239 1rj9_A FTSY, signal recognitio 96.7 0.001 3.6E-08 50.3 3.7 24 64-87 101-124 (304)
240 3cmw_A Protein RECA, recombina 96.7 0.0053 1.8E-07 56.1 8.6 88 63-157 1429-1518(1706)
241 2ehv_A Hypothetical protein PH 96.7 0.0009 3.1E-08 48.3 3.2 23 64-86 29-51 (251)
242 1u0j_A DNA replication protein 96.7 0.0019 6.5E-08 48.1 4.9 36 52-87 91-126 (267)
243 2c61_A A-type ATP synthase non 96.7 0.001 3.6E-08 53.2 3.7 93 65-157 152-258 (469)
244 3nwj_A ATSK2; P loop, shikimat 96.7 0.00062 2.1E-08 50.2 2.1 22 66-87 49-70 (250)
245 1e4v_A Adenylate kinase; trans 96.7 0.00097 3.3E-08 47.4 3.1 21 67-87 2-22 (214)
246 2pcj_A ABC transporter, lipopr 96.7 0.0019 6.4E-08 46.7 4.6 23 65-87 30-52 (224)
247 3gqb_B V-type ATP synthase bet 96.7 0.00093 3.2E-08 53.3 3.1 93 65-157 147-260 (464)
248 1svm_A Large T antigen; AAA+ f 96.7 0.0024 8.1E-08 49.9 5.4 25 63-87 167-191 (377)
249 1ak2_A Adenylate kinase isoenz 96.7 0.0011 3.6E-08 47.9 3.2 23 65-87 16-38 (233)
250 1htw_A HI0065; nucleotide-bind 96.7 0.0014 4.8E-08 44.9 3.7 24 64-87 32-55 (158)
251 3lnc_A Guanylate kinase, GMP k 96.7 0.00065 2.2E-08 48.9 2.1 22 65-86 27-48 (231)
252 4tmk_A Protein (thymidylate ki 96.7 0.0056 1.9E-07 43.9 6.9 51 66-118 4-55 (213)
253 1tf7_A KAIC; homohexamer, hexa 96.7 0.006 2.1E-07 49.4 7.9 34 54-87 270-303 (525)
254 1ltq_A Polynucleotide kinase; 96.7 0.001 3.5E-08 49.6 3.2 22 66-87 3-24 (301)
255 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.4E-08 47.8 3.0 21 67-87 2-22 (223)
256 3l0o_A Transcription terminati 96.7 0.0048 1.6E-07 48.5 6.9 50 54-106 165-216 (427)
257 2onk_A Molybdate/tungstate ABC 96.7 0.0021 7E-08 47.0 4.6 22 66-87 25-46 (240)
258 1b0u_A Histidine permease; ABC 96.7 0.0021 7.2E-08 47.6 4.7 24 64-87 31-54 (262)
259 2f1r_A Molybdopterin-guanine d 96.7 0.00068 2.3E-08 47.1 1.9 22 66-87 3-24 (171)
260 3oaa_A ATP synthase subunit al 96.6 0.0041 1.4E-07 50.1 6.6 89 65-157 162-263 (513)
261 3mfy_A V-type ATP synthase alp 96.6 0.004 1.4E-07 50.8 6.5 48 65-116 227-275 (588)
262 3gfo_A Cobalt import ATP-bindi 96.6 0.002 6.9E-08 48.1 4.5 23 65-87 34-56 (275)
263 3lv8_A DTMP kinase, thymidylat 96.6 0.0056 1.9E-07 44.6 6.7 38 65-104 27-65 (236)
264 1np6_A Molybdopterin-guanine d 96.6 0.0012 4.2E-08 45.9 3.0 23 65-87 6-28 (174)
265 4g1u_C Hemin import ATP-bindin 96.6 0.0024 8.3E-08 47.4 4.7 23 65-87 37-59 (266)
266 1mv5_A LMRA, multidrug resista 96.6 0.0027 9.3E-08 46.3 4.9 24 64-87 27-50 (243)
267 3b9q_A Chloroplast SRP recepto 96.6 0.0015 5.3E-08 49.3 3.7 24 64-87 99-122 (302)
268 2qe7_A ATP synthase subunit al 96.6 0.0032 1.1E-07 50.7 5.6 89 65-157 162-263 (502)
269 2ff7_A Alpha-hemolysin translo 96.6 0.0025 8.5E-08 46.7 4.5 23 65-87 35-57 (247)
270 2cbz_A Multidrug resistance-as 96.5 0.0016 5.6E-08 47.4 3.4 23 65-87 31-53 (237)
271 2i3b_A HCR-ntpase, human cance 96.5 0.0012 4E-08 46.6 2.5 21 67-87 3-23 (189)
272 2ixe_A Antigen peptide transpo 96.5 0.0028 9.6E-08 47.1 4.7 24 64-87 44-67 (271)
273 3a8t_A Adenylate isopentenyltr 96.5 0.0017 5.9E-08 49.9 3.6 25 64-88 39-63 (339)
274 1ji0_A ABC transporter; ATP bi 96.5 0.0026 8.9E-08 46.4 4.5 23 65-87 32-54 (240)
275 2olj_A Amino acid ABC transpor 96.5 0.0028 9.7E-08 46.9 4.7 24 64-87 49-72 (263)
276 3r20_A Cytidylate kinase; stru 96.5 0.0014 4.8E-08 47.8 3.0 23 65-87 9-31 (233)
277 1yrb_A ATP(GTP)binding protein 96.5 0.0019 6.6E-08 47.0 3.7 24 64-87 13-36 (262)
278 3d3q_A TRNA delta(2)-isopenten 96.5 0.0015 5.2E-08 50.2 3.2 22 66-87 8-29 (340)
279 1fzq_A ADP-ribosylation factor 96.5 0.003 1E-07 43.4 4.4 26 63-88 14-39 (181)
280 3f9v_A Minichromosome maintena 96.5 0.00094 3.2E-08 55.1 2.1 47 42-88 295-350 (595)
281 2zej_A Dardarin, leucine-rich 96.5 0.0016 5.4E-08 44.9 3.0 22 67-88 4-25 (184)
282 4hlc_A DTMP kinase, thymidylat 96.5 0.0056 1.9E-07 43.6 5.9 49 66-117 3-51 (205)
283 1vpl_A ABC transporter, ATP-bi 96.5 0.0033 1.1E-07 46.4 4.7 23 65-87 41-63 (256)
284 3sr0_A Adenylate kinase; phosp 96.5 0.0017 5.8E-08 46.4 3.0 21 67-87 2-22 (206)
285 2wji_A Ferrous iron transport 96.5 0.0023 8E-08 43.3 3.6 23 66-88 4-26 (165)
286 3crm_A TRNA delta(2)-isopenten 96.5 0.0017 5.9E-08 49.6 3.2 22 66-87 6-27 (323)
287 2yz2_A Putative ABC transporte 96.4 0.0035 1.2E-07 46.4 4.7 23 65-87 33-55 (266)
288 2vp4_A Deoxynucleoside kinase; 96.4 0.0017 6E-08 46.8 3.0 24 64-87 19-42 (230)
289 1a7j_A Phosphoribulokinase; tr 96.4 0.00073 2.5E-08 50.8 1.0 24 64-87 4-27 (290)
290 1g6h_A High-affinity branched- 96.4 0.0019 6.4E-08 47.6 3.2 23 65-87 33-55 (257)
291 1sgw_A Putative ABC transporte 96.4 0.0026 9E-08 45.7 3.9 23 65-87 35-57 (214)
292 2ck3_A ATP synthase subunit al 96.4 0.0037 1.3E-07 50.5 5.0 93 65-157 162-271 (510)
293 2qm8_A GTPase/ATPase; G protei 96.4 0.0039 1.3E-07 47.8 5.0 34 54-87 44-77 (337)
294 1oix_A RAS-related protein RAB 96.4 0.0022 7.4E-08 44.7 3.3 24 65-88 29-52 (191)
295 1g5t_A COB(I)alamin adenosyltr 96.4 0.0034 1.2E-07 44.6 4.2 90 65-157 28-129 (196)
296 3end_A Light-independent proto 96.4 0.0038 1.3E-07 46.8 4.8 25 63-87 39-63 (307)
297 2ghi_A Transport protein; mult 96.4 0.0022 7.6E-08 47.4 3.4 23 65-87 46-68 (260)
298 1q3t_A Cytidylate kinase; nucl 96.4 0.0021 7.2E-08 46.5 3.2 25 63-87 14-38 (236)
299 2d2e_A SUFC protein; ABC-ATPas 96.4 0.002 6.9E-08 47.3 3.2 23 65-87 29-51 (250)
300 2og2_A Putative signal recogni 96.4 0.0024 8.1E-08 49.5 3.7 24 64-87 156-179 (359)
301 2pze_A Cystic fibrosis transme 96.4 0.0021 7.1E-08 46.6 3.2 23 65-87 34-56 (229)
302 2ocp_A DGK, deoxyguanosine kin 96.4 0.0023 7.9E-08 46.3 3.4 23 65-87 2-24 (241)
303 2qi9_C Vitamin B12 import ATP- 96.4 0.0035 1.2E-07 46.1 4.4 23 65-87 26-48 (249)
304 2eyu_A Twitching motility prot 96.4 0.0026 8.9E-08 47.0 3.7 24 64-87 24-47 (261)
305 2zu0_C Probable ATP-dependent 96.4 0.0024 8.2E-08 47.4 3.4 25 64-88 45-69 (267)
306 3exa_A TRNA delta(2)-isopenten 96.4 0.0023 7.9E-08 48.8 3.3 23 65-87 3-25 (322)
307 1nlf_A Regulatory protein REPA 96.4 0.0021 7.3E-08 47.6 3.2 23 65-87 30-52 (279)
308 2v9p_A Replication protein E1; 96.4 0.0023 7.7E-08 48.6 3.3 24 64-87 125-148 (305)
309 3b85_A Phosphate starvation-in 96.4 0.0015 5E-08 46.8 2.1 22 66-87 23-44 (208)
310 3def_A T7I23.11 protein; chlor 96.4 0.0065 2.2E-07 44.6 5.7 39 51-89 22-60 (262)
311 2wjg_A FEOB, ferrous iron tran 96.3 0.0029 9.9E-08 43.4 3.6 24 65-88 7-30 (188)
312 2dyk_A GTP-binding protein; GT 96.3 0.0026 8.9E-08 42.3 3.2 23 66-88 2-24 (161)
313 2p67_A LAO/AO transport system 96.3 0.0061 2.1E-07 46.7 5.7 25 63-87 54-78 (341)
314 2zts_A Putative uncharacterize 96.3 0.003 1E-07 45.4 3.7 52 63-117 28-79 (251)
315 2f9l_A RAB11B, member RAS onco 96.3 0.0022 7.6E-08 44.8 2.9 24 65-88 5-28 (199)
316 1tq4_A IIGP1, interferon-induc 96.3 0.0027 9.4E-08 50.1 3.6 24 64-87 68-91 (413)
317 1h65_A Chloroplast outer envel 96.3 0.0071 2.4E-07 44.5 5.7 38 51-88 25-62 (270)
318 2ihy_A ABC transporter, ATP-bi 96.3 0.0024 8.3E-08 47.7 3.2 23 65-87 47-69 (279)
319 3ld9_A DTMP kinase, thymidylat 96.3 0.0059 2E-07 44.2 5.1 24 64-87 20-43 (223)
320 1p5z_B DCK, deoxycytidine kina 96.3 0.0018 6.1E-08 47.6 2.4 24 64-87 23-46 (263)
321 2ged_A SR-beta, signal recogni 96.3 0.0056 1.9E-07 42.2 4.8 25 64-88 47-71 (193)
322 2ce2_X GTPase HRAS; signaling 96.3 0.0024 8.3E-08 42.4 2.8 22 67-88 5-26 (166)
323 1g8f_A Sulfate adenylyltransfe 96.3 0.0037 1.3E-07 50.6 4.2 43 45-87 375-417 (511)
324 2nq2_C Hypothetical ABC transp 96.3 0.0026 9E-08 46.8 3.1 23 65-87 31-53 (253)
325 2nzj_A GTP-binding protein REM 96.3 0.0027 9.4E-08 42.8 3.0 24 65-88 4-27 (175)
326 2lkc_A Translation initiation 96.3 0.0045 1.6E-07 41.9 4.1 25 64-88 7-31 (178)
327 3v9p_A DTMP kinase, thymidylat 96.2 0.0043 1.5E-07 45.0 4.1 24 64-87 24-47 (227)
328 2yv5_A YJEQ protein; hydrolase 96.2 0.0049 1.7E-07 46.4 4.5 31 51-86 156-186 (302)
329 3sop_A Neuronal-specific septi 96.2 0.003 1E-07 47.0 3.2 21 67-87 4-24 (270)
330 1nij_A Hypothetical protein YJ 96.2 0.0026 8.9E-08 48.3 2.9 25 64-88 3-27 (318)
331 3q72_A GTP-binding protein RAD 96.2 0.003 1E-07 42.3 3.0 22 67-88 4-25 (166)
332 3upu_A ATP-dependent DNA helic 96.2 0.0093 3.2E-07 47.4 6.1 36 49-87 32-67 (459)
333 3nh6_A ATP-binding cassette SU 96.2 0.0027 9.2E-08 48.1 2.8 24 64-87 79-102 (306)
334 3fvq_A Fe(3+) IONS import ATP- 96.2 0.006 2.1E-07 47.2 4.8 23 65-87 30-52 (359)
335 3q85_A GTP-binding protein REM 96.2 0.0033 1.1E-07 42.2 3.0 22 66-87 3-24 (169)
336 2v3c_C SRP54, signal recogniti 96.2 0.0031 1E-07 50.1 3.3 23 65-87 99-121 (432)
337 4akg_A Glutathione S-transfera 96.2 0.017 5.9E-07 55.0 8.5 51 66-120 1268-1318(2695)
338 3foz_A TRNA delta(2)-isopenten 96.2 0.0032 1.1E-07 47.9 3.2 24 64-87 9-32 (316)
339 2gj8_A MNME, tRNA modification 96.2 0.0035 1.2E-07 42.8 3.1 23 66-88 5-27 (172)
340 2erx_A GTP-binding protein DI- 96.1 0.0034 1.2E-07 42.1 3.0 23 66-88 4-26 (172)
341 1z2a_A RAS-related protein RAB 96.1 0.0039 1.3E-07 41.7 3.3 24 65-88 5-28 (168)
342 3con_A GTPase NRAS; structural 96.1 0.003 1E-07 43.5 2.7 23 66-88 22-44 (190)
343 2pjz_A Hypothetical protein ST 96.1 0.0034 1.2E-07 46.5 3.2 23 65-87 30-52 (263)
344 2axn_A 6-phosphofructo-2-kinas 96.1 0.0047 1.6E-07 50.1 4.2 23 65-87 35-57 (520)
345 1svi_A GTP-binding protein YSX 96.1 0.0044 1.5E-07 42.7 3.5 25 64-88 22-46 (195)
346 2qmh_A HPR kinase/phosphorylas 96.1 0.0034 1.2E-07 44.8 2.9 23 65-87 34-56 (205)
347 1u8z_A RAS-related protein RAL 96.1 0.0033 1.1E-07 41.9 2.7 23 66-88 5-27 (168)
348 2bbs_A Cystic fibrosis transme 96.1 0.0041 1.4E-07 46.7 3.5 24 64-87 63-86 (290)
349 3kta_A Chromosome segregation 96.1 0.004 1.4E-07 42.8 3.3 21 66-86 27-47 (182)
350 1pui_A ENGB, probable GTP-bind 96.1 0.0026 8.9E-08 44.6 2.3 25 64-88 25-49 (210)
351 3pqc_A Probable GTP-binding pr 96.1 0.0046 1.6E-07 42.5 3.6 25 64-88 22-46 (195)
352 3cr8_A Sulfate adenylyltranfer 96.1 0.0055 1.9E-07 50.1 4.5 24 64-87 368-391 (552)
353 1nrj_B SR-beta, signal recogni 96.1 0.004 1.4E-07 43.9 3.3 25 64-88 11-35 (218)
354 2www_A Methylmalonic aciduria 96.1 0.0045 1.5E-07 47.7 3.7 24 64-87 73-96 (349)
355 4dzz_A Plasmid partitioning pr 96.1 0.022 7.5E-07 39.6 7.1 41 66-108 2-43 (206)
356 1c1y_A RAS-related protein RAP 96.1 0.0036 1.2E-07 41.8 2.7 23 66-88 4-26 (167)
357 3llm_A ATP-dependent RNA helic 96.0 0.028 9.5E-07 40.4 7.7 101 52-157 67-185 (235)
358 1kao_A RAP2A; GTP-binding prot 96.0 0.0036 1.2E-07 41.7 2.7 23 66-88 4-26 (167)
359 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0037 1.3E-07 42.9 2.8 24 65-88 7-30 (184)
360 1z08_A RAS-related protein RAB 96.0 0.0036 1.2E-07 42.0 2.7 24 65-88 6-29 (170)
361 2cxx_A Probable GTP-binding pr 96.0 0.0042 1.4E-07 42.5 3.1 22 67-88 3-24 (190)
362 1u0l_A Probable GTPase ENGC; p 96.0 0.0071 2.4E-07 45.5 4.5 33 51-88 160-192 (301)
363 1ek0_A Protein (GTP-binding pr 96.0 0.0038 1.3E-07 41.7 2.7 22 67-88 5-26 (170)
364 3tw8_B RAS-related protein RAB 96.0 0.005 1.7E-07 41.7 3.4 25 64-88 8-32 (181)
365 1z0j_A RAB-22, RAS-related pro 96.0 0.004 1.4E-07 41.7 2.7 23 66-88 7-29 (170)
366 1lw7_A Transcriptional regulat 96.0 0.0043 1.5E-07 47.9 3.2 23 65-87 170-192 (365)
367 2it1_A 362AA long hypothetical 96.0 0.008 2.7E-07 46.6 4.7 23 65-87 29-51 (362)
368 1r8s_A ADP-ribosylation factor 96.0 0.0041 1.4E-07 41.5 2.7 20 68-87 3-22 (164)
369 1v43_A Sugar-binding transport 96.0 0.0081 2.8E-07 46.8 4.7 23 65-87 37-59 (372)
370 3d31_A Sulfate/molybdate ABC t 96.0 0.0064 2.2E-07 46.9 4.1 23 65-87 26-48 (348)
371 4b3f_X DNA-binding protein smu 96.0 0.011 3.7E-07 49.1 5.8 62 48-117 192-254 (646)
372 1ky3_A GTP-binding protein YPT 96.0 0.004 1.4E-07 42.2 2.7 25 64-88 7-31 (182)
373 2hxs_A RAB-26, RAS-related pro 96.0 0.0046 1.6E-07 41.9 3.0 24 65-88 6-29 (178)
374 2h92_A Cytidylate kinase; ross 96.0 0.0034 1.1E-07 44.6 2.4 22 66-87 4-25 (219)
375 1g16_A RAS-related protein SEC 96.0 0.0044 1.5E-07 41.5 2.8 23 66-88 4-26 (170)
376 3eph_A TRNA isopentenyltransfe 96.0 0.0045 1.5E-07 48.7 3.2 22 66-87 3-24 (409)
377 1r2q_A RAS-related protein RAB 96.0 0.0042 1.4E-07 41.5 2.7 23 66-88 7-29 (170)
378 1g29_1 MALK, maltose transport 95.9 0.0075 2.6E-07 46.9 4.5 23 65-87 29-51 (372)
379 1wms_A RAB-9, RAB9, RAS-relate 95.9 0.0042 1.4E-07 42.0 2.7 24 65-88 7-30 (177)
380 1f6b_A SAR1; gtpases, N-termin 95.9 0.0054 1.8E-07 42.9 3.3 24 65-88 25-48 (198)
381 2fn4_A P23, RAS-related protei 95.9 0.006 2.1E-07 41.2 3.5 25 64-88 8-32 (181)
382 3ihw_A Centg3; RAS, centaurin, 95.9 0.0043 1.5E-07 42.9 2.7 25 64-88 19-43 (184)
383 3tui_C Methionine import ATP-b 95.9 0.0052 1.8E-07 47.7 3.4 24 64-87 53-76 (366)
384 4bas_A ADP-ribosylation factor 95.9 0.006 2E-07 42.1 3.5 26 64-89 16-41 (199)
385 2r8r_A Sensor protein; KDPD, P 95.9 0.011 3.7E-07 42.9 4.9 22 66-87 7-28 (228)
386 1z47_A CYSA, putative ABC-tran 95.9 0.0048 1.7E-07 47.7 3.2 23 65-87 41-63 (355)
387 3cbq_A GTP-binding protein REM 95.9 0.0041 1.4E-07 43.4 2.6 23 64-86 22-44 (195)
388 3t1o_A Gliding protein MGLA; G 95.9 0.0045 1.5E-07 42.6 2.7 23 65-87 14-36 (198)
389 1bif_A 6-phosphofructo-2-kinas 95.9 0.0066 2.3E-07 48.5 4.1 23 65-87 39-61 (469)
390 1z0f_A RAB14, member RAS oncog 95.9 0.0046 1.6E-07 41.8 2.7 25 64-88 14-38 (179)
391 2yyz_A Sugar ABC transporter, 95.9 0.0055 1.9E-07 47.5 3.4 23 65-87 29-51 (359)
392 3fdi_A Uncharacterized protein 95.9 0.0052 1.8E-07 43.5 3.1 23 65-87 6-28 (201)
393 3t5g_A GTP-binding protein RHE 95.9 0.0063 2.2E-07 41.4 3.4 24 65-88 6-29 (181)
394 1ega_A Protein (GTP-binding pr 95.9 0.0052 1.8E-07 46.2 3.1 25 64-88 7-31 (301)
395 1m2o_B GTP-binding protein SAR 95.9 0.0049 1.7E-07 42.7 2.8 24 65-88 23-46 (190)
396 3c5c_A RAS-like protein 12; GD 95.9 0.0047 1.6E-07 42.7 2.7 24 65-88 21-44 (187)
397 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0048 1.6E-07 42.1 2.7 23 66-88 5-27 (189)
398 1upt_A ARL1, ADP-ribosylation 95.8 0.0068 2.3E-07 40.6 3.5 24 65-88 7-30 (171)
399 3bc1_A RAS-related protein RAB 95.8 0.0048 1.6E-07 42.2 2.7 24 65-88 11-34 (195)
400 1m8p_A Sulfate adenylyltransfe 95.8 0.0071 2.4E-07 49.7 4.1 24 64-87 395-418 (573)
401 3rlf_A Maltose/maltodextrin im 95.8 0.0059 2E-07 47.7 3.4 23 65-87 29-51 (381)
402 3kkq_A RAS-related protein M-R 95.8 0.0054 1.9E-07 41.8 2.9 25 64-88 17-41 (183)
403 1cp2_A CP2, nitrogenase iron p 95.8 0.01 3.5E-07 43.3 4.6 22 66-87 2-23 (269)
404 2bme_A RAB4A, RAS-related prot 95.8 0.0053 1.8E-07 41.9 2.8 25 64-88 9-33 (186)
405 3llu_A RAS-related GTP-binding 95.8 0.006 2E-07 42.4 3.1 24 65-88 20-43 (196)
406 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0052 1.8E-07 41.9 2.7 24 65-88 5-28 (186)
407 2y8e_A RAB-protein 6, GH09086P 95.8 0.006 2E-07 41.2 3.0 23 66-88 15-37 (179)
408 2orw_A Thymidine kinase; TMTK, 95.8 0.0064 2.2E-07 42.5 3.2 22 66-87 4-25 (184)
409 2ewv_A Twitching motility prot 95.8 0.0062 2.1E-07 47.3 3.4 24 64-87 135-158 (372)
410 2oil_A CATX-8, RAS-related pro 95.8 0.0051 1.8E-07 42.4 2.7 25 64-88 24-48 (193)
411 2afh_E Nitrogenase iron protei 95.8 0.0071 2.4E-07 44.9 3.6 23 65-87 2-24 (289)
412 3gmt_A Adenylate kinase; ssgci 95.8 0.0051 1.8E-07 44.7 2.7 23 65-87 8-30 (230)
413 2qu8_A Putative nucleolar GTP- 95.8 0.0079 2.7E-07 42.9 3.8 25 64-88 28-52 (228)
414 1zbd_A Rabphilin-3A; G protein 95.8 0.006 2E-07 42.4 3.0 24 65-88 8-31 (203)
415 2a9k_A RAS-related protein RAL 95.8 0.006 2E-07 41.5 2.9 24 65-88 18-41 (187)
416 2iwr_A Centaurin gamma 1; ANK 95.8 0.0039 1.3E-07 42.4 2.0 24 65-88 7-30 (178)
417 2cjw_A GTP-binding protein GEM 95.8 0.0059 2E-07 42.5 2.9 23 65-87 6-28 (192)
418 1oxx_K GLCV, glucose, ABC tran 95.8 0.0065 2.2E-07 46.9 3.4 23 65-87 31-53 (353)
419 2qnr_A Septin-2, protein NEDD5 95.8 0.0051 1.7E-07 46.3 2.7 21 67-87 20-40 (301)
420 3clv_A RAB5 protein, putative; 95.8 0.0055 1.9E-07 42.2 2.7 24 65-88 7-30 (208)
421 1moz_A ARL1, ADP-ribosylation 95.8 0.0066 2.2E-07 41.3 3.1 25 64-88 17-41 (183)
422 2efe_B Small GTP-binding prote 95.7 0.0061 2.1E-07 41.3 2.9 24 65-88 12-35 (181)
423 2g6b_A RAS-related protein RAB 95.7 0.0057 1.9E-07 41.5 2.7 24 65-88 10-33 (180)
424 3bwd_D RAC-like GTP-binding pr 95.7 0.0057 2E-07 41.5 2.7 24 65-88 8-31 (182)
425 3oes_A GTPase rhebl1; small GT 95.7 0.0059 2E-07 42.6 2.8 25 64-88 23-47 (201)
426 3io3_A DEHA2D07832P; chaperone 95.7 0.015 5.1E-07 44.8 5.3 24 64-87 17-40 (348)
427 2atv_A RERG, RAS-like estrogen 95.7 0.0057 2E-07 42.4 2.7 24 65-88 28-51 (196)
428 1vg8_A RAS-related protein RAB 95.7 0.0057 2E-07 42.6 2.7 25 64-88 7-31 (207)
429 4gzl_A RAS-related C3 botulinu 95.7 0.0076 2.6E-07 42.2 3.3 24 65-88 30-53 (204)
430 2b6h_A ADP-ribosylation factor 95.7 0.0067 2.3E-07 42.1 3.0 24 65-88 29-52 (192)
431 2bov_A RAla, RAS-related prote 95.7 0.0065 2.2E-07 42.2 2.9 25 64-88 13-37 (206)
432 3dz8_A RAS-related protein RAB 95.7 0.0063 2.1E-07 42.0 2.8 24 65-88 23-46 (191)
433 2q3h_A RAS homolog gene family 95.7 0.0068 2.3E-07 42.1 3.0 24 65-88 20-43 (201)
434 2gza_A Type IV secretion syste 95.7 0.0057 1.9E-07 47.3 2.8 22 66-87 176-197 (361)
435 3tkl_A RAS-related protein RAB 95.7 0.0084 2.9E-07 41.2 3.5 25 64-88 15-39 (196)
436 2x77_A ADP-ribosylation factor 95.7 0.013 4.4E-07 40.2 4.4 25 64-88 21-45 (189)
437 1gwn_A RHO-related GTP-binding 95.7 0.0064 2.2E-07 42.9 2.8 25 64-88 27-51 (205)
438 1ksh_A ARF-like protein 2; sma 95.7 0.0092 3.2E-07 40.8 3.6 26 64-89 17-42 (186)
439 3tmk_A Thymidylate kinase; pho 95.7 0.021 7.1E-07 41.0 5.6 23 65-87 5-27 (216)
440 2ew1_A RAS-related protein RAB 95.7 0.0064 2.2E-07 42.7 2.8 25 64-88 25-49 (201)
441 2fg5_A RAB-22B, RAS-related pr 95.7 0.0064 2.2E-07 42.0 2.8 24 65-88 23-46 (192)
442 1x6v_B Bifunctional 3'-phospho 95.7 0.0068 2.3E-07 50.3 3.4 24 64-87 51-74 (630)
443 3gd7_A Fusion complex of cysti 95.7 0.0078 2.7E-07 47.1 3.5 24 64-87 46-69 (390)
444 3iev_A GTP-binding protein ERA 95.7 0.0075 2.6E-07 45.5 3.4 26 63-88 8-33 (308)
445 2o52_A RAS-related protein RAB 95.7 0.0075 2.6E-07 42.1 3.1 25 64-88 24-48 (200)
446 1zj6_A ADP-ribosylation factor 95.7 0.011 3.6E-07 40.6 3.9 25 64-88 15-39 (187)
447 2il1_A RAB12; G-protein, GDP, 95.6 0.007 2.4E-07 41.9 2.9 24 65-88 26-49 (192)
448 2fh5_B SR-beta, signal recogni 95.6 0.0064 2.2E-07 42.7 2.7 24 65-88 7-30 (214)
449 3iqw_A Tail-anchored protein t 95.6 0.02 6.9E-07 43.8 5.7 23 65-87 16-38 (334)
450 1zd9_A ADP-ribosylation factor 95.6 0.0066 2.2E-07 41.8 2.7 24 65-88 22-45 (188)
451 3k53_A Ferrous iron transport 95.6 0.0091 3.1E-07 44.0 3.7 24 65-88 3-26 (271)
452 3reg_A RHO-like small GTPase; 95.6 0.0066 2.3E-07 42.0 2.7 25 64-88 22-46 (194)
453 3jvv_A Twitching mobility prot 95.6 0.0083 2.9E-07 46.4 3.5 23 65-87 123-145 (356)
454 2j1l_A RHO-related GTP-binding 95.6 0.0076 2.6E-07 42.5 3.1 24 65-88 34-57 (214)
455 2j69_A Bacterial dynamin-like 95.6 0.013 4.5E-07 49.1 4.9 42 47-88 51-92 (695)
456 3lxx_A GTPase IMAP family memb 95.6 0.0094 3.2E-07 42.9 3.6 26 64-89 28-53 (239)
457 2gk6_A Regulator of nonsense t 95.6 0.02 6.7E-07 47.4 5.9 64 47-117 182-245 (624)
458 2h57_A ADP-ribosylation factor 95.6 0.0068 2.3E-07 41.7 2.7 25 65-89 21-45 (190)
459 2gf0_A GTP-binding protein DI- 95.6 0.011 3.7E-07 40.8 3.7 24 65-88 8-31 (199)
460 1p9r_A General secretion pathw 95.6 0.017 5.7E-07 45.7 5.2 34 51-87 156-189 (418)
461 2h17_A ADP-ribosylation factor 95.6 0.0073 2.5E-07 41.3 2.8 24 65-88 21-44 (181)
462 2gks_A Bifunctional SAT/APS ki 95.6 0.011 3.7E-07 48.3 4.2 24 64-87 371-394 (546)
463 2gf9_A RAS-related protein RAB 95.6 0.0071 2.4E-07 41.6 2.7 24 65-88 22-45 (189)
464 2a5j_A RAS-related protein RAB 95.6 0.007 2.4E-07 41.8 2.7 24 65-88 21-44 (191)
465 1x3s_A RAS-related protein RAB 95.6 0.0072 2.4E-07 41.5 2.7 24 65-88 15-38 (195)
466 1z06_A RAS-related protein RAB 95.6 0.0071 2.4E-07 41.6 2.7 24 65-88 20-43 (189)
467 3vr4_A V-type sodium ATPase ca 95.6 0.039 1.3E-06 45.3 7.3 48 64-115 231-279 (600)
468 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0065 2.2E-07 46.4 2.7 22 66-87 172-193 (330)
469 3ug7_A Arsenical pump-driving 95.5 0.025 8.6E-07 43.4 6.0 24 64-87 25-48 (349)
470 3kjh_A CO dehydrogenase/acetyl 95.5 0.014 4.7E-07 41.9 4.3 20 68-87 3-22 (254)
471 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0077 2.6E-07 42.0 2.8 24 65-88 8-31 (206)
472 1jwy_B Dynamin A GTPase domain 95.5 0.0092 3.1E-07 44.6 3.4 26 63-88 22-47 (315)
473 3fkq_A NTRC-like two-domain pr 95.5 0.017 5.9E-07 44.6 5.0 25 63-87 141-166 (373)
474 2p5s_A RAS and EF-hand domain 95.5 0.0076 2.6E-07 41.9 2.7 25 64-88 27-51 (199)
475 3tqf_A HPR(Ser) kinase; transf 95.5 0.0084 2.9E-07 41.9 2.8 23 65-87 16-38 (181)
476 1c9k_A COBU, adenosylcobinamid 95.5 0.019 6.6E-07 40.1 4.7 20 68-87 2-21 (180)
477 2atx_A Small GTP binding prote 95.5 0.0084 2.9E-07 41.3 2.8 24 65-88 18-41 (194)
478 2fz4_A DNA repair protein RAD2 95.5 0.041 1.4E-06 39.7 6.6 38 45-87 93-130 (237)
479 1wf3_A GTP-binding protein; GT 95.5 0.0093 3.2E-07 44.9 3.2 25 64-88 6-30 (301)
480 2g3y_A GTP-binding protein GEM 95.5 0.0088 3E-07 42.6 2.9 23 65-87 37-59 (211)
481 2fv8_A H6, RHO-related GTP-bin 95.4 0.0085 2.9E-07 42.0 2.8 24 65-88 25-48 (207)
482 2rcn_A Probable GTPase ENGC; Y 95.4 0.0092 3.1E-07 46.2 3.2 23 66-88 216-238 (358)
483 2j0v_A RAC-like GTP-binding pr 95.4 0.0088 3E-07 41.9 2.8 24 65-88 9-32 (212)
484 3cph_A RAS-related protein SEC 95.4 0.0085 2.9E-07 41.8 2.7 24 65-88 20-43 (213)
485 2f7s_A C25KG, RAS-related prot 95.4 0.0094 3.2E-07 41.9 3.0 25 64-88 24-48 (217)
486 2hup_A RAS-related protein RAB 95.4 0.0089 3.1E-07 41.8 2.8 25 64-88 28-52 (201)
487 1mky_A Probable GTP-binding pr 95.4 0.024 8.3E-07 44.8 5.6 44 45-88 151-203 (439)
488 4dhe_A Probable GTP-binding pr 95.4 0.0072 2.5E-07 42.6 2.3 26 64-89 28-53 (223)
489 2gco_A H9, RHO-related GTP-bin 95.4 0.0096 3.3E-07 41.5 2.8 24 65-88 25-48 (201)
490 3ch4_B Pmkase, phosphomevalona 95.4 0.015 5.2E-07 41.4 3.9 24 64-87 10-33 (202)
491 2fu5_C RAS-related protein RAB 95.4 0.0054 1.8E-07 41.8 1.5 24 65-88 8-31 (183)
492 2xtp_A GTPase IMAP family memb 95.3 0.014 4.8E-07 42.5 3.7 25 64-88 21-45 (260)
493 4i1u_A Dephospho-COA kinase; s 95.3 0.013 4.4E-07 42.0 3.4 25 63-87 7-31 (210)
494 3q3j_B RHO-related GTP-binding 95.3 0.0096 3.3E-07 42.1 2.7 24 65-88 27-50 (214)
495 2obl_A ESCN; ATPase, hydrolase 95.3 0.011 3.7E-07 45.6 3.2 23 65-87 71-93 (347)
496 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0086 2.9E-07 47.9 2.6 24 64-87 137-160 (460)
497 3zq6_A Putative arsenical pump 95.3 0.035 1.2E-06 42.1 5.9 22 66-87 15-36 (324)
498 3ez2_A Plasmid partition prote 95.3 0.024 8.2E-07 44.1 5.1 25 63-87 106-131 (398)
499 2aka_B Dynamin-1; fusion prote 95.3 0.032 1.1E-06 41.2 5.5 25 64-88 25-49 (299)
500 4dkx_A RAS-related protein RAB 95.2 0.011 3.7E-07 42.4 2.8 22 67-88 15-36 (216)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.90 E-value=9.6e-23 Score=166.67 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=96.8
Q ss_pred cccHHHHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhc--CcccccccCeeEEEEcCCCC--CHHHHHHHHHHH
Q 045087 45 VGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYS--SNYMKHYFDCHAWVQEPYTC--YADQILDIIIKF 119 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~l~~i~~~ 119 (157)
+||+.++++|.++|..+ ....++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 34679999999999999999999997 66899999999999998875 789999999999
Q ss_pred hCCCCC---CcccccccHHHHHHHHHHHhcCC-cEEEEeeCC
Q 045087 120 LMPSSR---LSEIKDKNYEMKKIILHEYLMTK-RYLIVIDDV 157 (157)
Q Consensus 120 l~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdV 157 (157)
++.... .+.....+..++...+++.|.++ |||||||||
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv 252 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV 252 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 987532 12233456678899999999996 999999996
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.80 E-value=3.6e-19 Score=155.32 Aligned_cols=119 Identities=23% Similarity=0.170 Sum_probs=94.2
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccc-cccc-CeeEEEEcCCCCC--HHHHHH
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYM-KHYF-DCHAWVQEPYTCY--ADQILD 114 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~~~l~ 114 (157)
..+..|+||+.++++|.++|.......++++|+||||+||||||+++|++.+. ..+| +..+|+++++... ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 34567999999999999999876667899999999999999999999996443 4556 4566999988543 345577
Q ss_pred HHHHHhCCCCCCcccccccHHHHHHHHHHHhcCC--cEEEEeeCC
Q 045087 115 IIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTK--RYLIVIDDV 157 (157)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdV 157 (157)
.++..+............+.+++...++.+|.++ |||||||||
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~ 245 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecC
Confidence 7888877644322234567789999999999887 999999997
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.76 E-value=2e-18 Score=148.24 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=88.6
Q ss_pred ccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCe-eEEEEcCCCCCHHHHHHHHHHHhCC
Q 045087 44 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDC-HAWVQEPYTCYADQILDIIIKFLMP 122 (157)
Q Consensus 44 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~l~~i~~~l~~ 122 (157)
.+||+.++++|.++|...+ ..++++|+||||+||||||+++|++.+++.+|++ ++|+++++.++...++..|+..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998633 3789999999999999999999987778899986 8899999999988888888775432
Q ss_pred CC-----CCc--ccccccHHHHHHHHHHHh---cCCcEEEEeeCC
Q 045087 123 SS-----RLS--EIKDKNYEMKKIILHEYL---MTKRYLIVIDDV 157 (157)
Q Consensus 123 ~~-----~~~--~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdV 157 (157)
.. ... .....+.+++...+++.| .++|+|||||||
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDV 253 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESC
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCc
Confidence 10 000 001123456677777766 789999999997
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=140.74 Aligned_cols=118 Identities=22% Similarity=0.192 Sum_probs=88.9
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccc-cccc-CeeEEEEcCCCCCHHHHHHHH
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYM-KHYF-DCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~l~~i 116 (157)
..+..||||+.++++|.++|.......++++|+||||+||||||..++++..+ ..+| +.++|++++.. +...++..+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 34577999999999999999865556789999999999999999999997555 7789 47899998765 334444444
Q ss_pred ---HHHhCCCCCCcccccccHHHHHHHHHHHhcC--CcEEEEeeCC
Q 045087 117 ---IKFLMPSSRLSEIKDKNYEMKKIILHEYLMT--KRYLIVIDDV 157 (157)
Q Consensus 117 ---~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdV 157 (157)
+..+............+.+.+...+...|.+ +++|||||||
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv 245 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV 245 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEE
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCC
Confidence 4455432111112345677888889988876 7899999996
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=2e-13 Score=106.98 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=84.4
Q ss_pred CCCCCccccHHHHHHHHHHH-hc--CC--CCceEEEE--EeCCCCcHHHHHHHHhcCcccccc-----cC-eeEEEEcCC
Q 045087 39 SKSRDTVGLDDRMEELLDLL-IE--GP--PQLSAVTI--LDSIGLDKTAFAAEAYSSNYMKHY-----FD-CHAWVQEPY 105 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~~~~ 105 (157)
..+..++||+.++++|.+++ .. .. .....+.| +|++|+||||||+.+++ ..... |. ..+|+++..
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCC
Confidence 34578999999999999988 42 11 23456677 99999999999999998 44332 22 357888767
Q ss_pred CCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087 106 TCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 106 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
..+...++..++.+++...+ ....+..++...+.+.|. +++++|||||+
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~ 147 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEF 147 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEEST
T ss_pred CCCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 77889999999999976432 123345667777777775 77999999996
No 6
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=9.3e-13 Score=102.04 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=86.8
Q ss_pred CCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCcccccc------cCeeEEEEcCCCCCHH
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY------FDCHAWVQEPYTCYAD 110 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~~~~~~ 110 (157)
..++.++||+.++++|..++... ......+.|+|++|+||||||+.+++ ..... -...+|+++....+..
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 34578999999999999988542 33456889999999999999999988 44322 1245678888888899
Q ss_pred HHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHh--cCCcEEEEeeCC
Q 045087 111 QILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 111 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdV 157 (157)
.++..++.+++...+ ....+..++...+.+.+ .+++++|+|||+
T Consensus 94 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi 139 (387)
T 2v1u_A 94 RVASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEI 139 (387)
T ss_dssp HHHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETT
T ss_pred HHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccH
Confidence 999999999976433 23444567777777777 456899999986
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=1.1e-12 Score=101.94 Aligned_cols=113 Identities=13% Similarity=-0.005 Sum_probs=84.5
Q ss_pred CCCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc--------cCeeEEEEcCCCC-CH
Q 045087 41 SRDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY--------FDCHAWVQEPYTC-YA 109 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~~~~-~~ 109 (157)
+..++||+.++++|.+++.. .....+.+.|+|++|+|||+||+.+++ ..... ....+|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 47899999999999988854 233456899999999999999999998 44222 2356777776666 88
Q ss_pred HHHHHHHHHHhCCCCCCcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 110 DQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 110 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
..++..++.++.+... + ....+...+...+.+.+..++.+|||||+
T Consensus 97 ~~~~~~l~~~l~~~~~-~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi 142 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSV-P-KHGINLGEYIDKIKNGTRNIRAIIYLDEV 142 (384)
T ss_dssp HHHHHHHHHHHHCSCC-C-SSSSCTHHHHHHHHHHHSSSCEEEEEETT
T ss_pred HHHHHHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHhccCCCEEEEECH
Confidence 8999999988843211 0 12334567788888888877779999986
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=8.4e-12 Score=96.88 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=84.3
Q ss_pred CCCCccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc-CeeEEEEcCCCCCHHHHHH
Q 045087 40 KSRDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF-DCHAWVQEPYTCYADQILD 114 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~l~ 114 (157)
.++.++||+.++++|..++.. .....+.+.|+|++|+|||||++.+++ ...... ...+|+++....+...++.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHH
Confidence 447899999999999998865 222234899999999999999999988 444332 3466778777778889999
Q ss_pred HHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087 115 IIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 115 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
.++..++...+ ....+..++...+...+. +++.+|+|||+
T Consensus 93 ~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~ 134 (389)
T 1fnn_A 93 EIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDA 134 (389)
T ss_dssp HHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETG
T ss_pred HHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence 99998865432 123345667777777664 56889999985
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=6.6e-13 Score=102.73 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=83.7
Q ss_pred CCCCCCccccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhcCccccccc---CeeEEEEcCCCCCHHHH
Q 045087 38 SSKSRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF---DCHAWVQEPYTCYADQI 112 (157)
Q Consensus 38 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~ 112 (157)
...+..|+||+.+++.|.+++... ......+.|+|++|+||||||+.+++ .....+ ...+|+++....+...+
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHH
Confidence 344578999999999999988642 23456899999999999999999998 444432 24567776666677888
Q ss_pred HHHHHHHhCCCCCCcccccccHHHHHHHHHHHhc--CCcEEEEeeCC
Q 045087 113 LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 113 l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
+..++.+++.... ....+..++...+.+.+. +++++|||||+
T Consensus 94 ~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~ 137 (386)
T 2qby_A 94 LADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137 (386)
T ss_dssp HHHHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETH
T ss_pred HHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 8888887755332 123345666667777664 45899999984
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.34 E-value=3.3e-12 Score=97.69 Aligned_cols=108 Identities=8% Similarity=0.070 Sum_probs=75.7
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC------CCHHHH
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT------CYADQI 112 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~------~~~~~~ 112 (157)
..+..|+||+.++++|.+++..+ +++.|+|++|+|||||++.+++. . . .+|+++... .+...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 45678999999999999998763 58999999999999999999883 2 1 667775432 256677
Q ss_pred HHHHHHHhCCC--------------CCCcccccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 113 LDIIIKFLMPS--------------SRLSEIKDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 113 l~~i~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
+..+...+... .........+..++...+.+.+.. ++++|||||+
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~ 137 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEA 137 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETG
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCH
Confidence 77777655420 000001124556677777776643 3899999995
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=5.5e-11 Score=90.96 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=70.0
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCC-----CCHHHHH
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYT-----CYADQIL 113 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~l 113 (157)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++.+++ .... ..+|+++... .+...++
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHH
Confidence 356789999999999999 644 5899999999999999999988 3332 2578876532 3455666
Q ss_pred HHHHHHhCC-------------CC---CCcc----c-----ccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 114 DIIIKFLMP-------------SS---RLSE----I-----KDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 114 ~~i~~~l~~-------------~~---~~~~----~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
..+...+.. .. ..+. . ......++...+.+.-. ++++|||||+
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~ 146 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEA 146 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETG
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECH
Confidence 555544311 00 0000 0 12344556666655433 4899999996
No 12
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.7e-10 Score=86.49 Aligned_cols=111 Identities=9% Similarity=-0.004 Sum_probs=75.8
Q ss_pred CCccccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc-------CeeEEEEcCCCCCHHHH
Q 045087 42 RDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF-------DCHAWVQEPYTCYADQI 112 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------~~~~wv~~~~~~~~~~~ 112 (157)
..+.||++++++|...|.. .......+.|+|++|+|||++++.+++ ++.... -..+++++....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 3489999999999888754 234567889999999999999999998 443211 13567777777889999
Q ss_pred HHHHHHHhCCCCCCcccccccHHHHHHHHHHH--hcCCcEEEEeeCC
Q 045087 113 LDIIIKFLMPSSRLSEIKDKNYEMKKIILHEY--LMTKRYLIVIDDV 157 (157)
Q Consensus 113 l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdV 157 (157)
+..|+.++.+... ......+.+...+... -.+++++++||++
T Consensus 98 ~~~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~ 141 (318)
T 3te6_A 98 YEKIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNP 141 (318)
T ss_dssp HHHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECC
T ss_pred HHHHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecH
Confidence 9999999976432 1122233333333332 1456799999985
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.98 E-value=3.1e-09 Score=74.02 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=39.0
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|++++++++.+++.... ...+.|+|.+|+|||+||+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999987643 45678999999999999999987
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.96 E-value=9.6e-09 Score=73.09 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|++..++.|.+++.... .+.+.|+|.+|+|||+||+.+++
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997753 33489999999999999999987
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.88 E-value=1.2e-08 Score=73.44 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=39.4
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|++..++.|..++..+. ....+.|+|++|+||||||+.+++
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4569999999999999997653 234788999999999999999987
No 16
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.80 E-value=9.4e-09 Score=71.43 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=38.7
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|++.+++.+.+.+.... ...+.|+|.+|+|||+||+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999987643 45678999999999999999987
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=3.7e-08 Score=74.39 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=38.9
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|++..++.|.+++..+. .+.+.++|++|+|||++|+.+++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 4679999999999999997754 33388999999999999999988
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.66 E-value=4.5e-08 Score=73.10 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCCCCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 39 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++++|.+..+++|.+.+... ......+.|+|++|+|||+||+.+++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34567999999999998887431 12345789999999999999999988
No 19
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.57 E-value=2.2e-07 Score=65.93 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=39.1
Q ss_pred CCCccccH----HHHHHHHHHHhcCCCC--ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc
Q 045087 41 SRDTVGLD----DRMEELLDLLIEGPPQ--LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE 103 (157)
Q Consensus 41 ~~~~vGr~----~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 103 (157)
-++|++.. ..++.+.+++...... ...+.|+|.+|+|||+||+.+++ .........+|+++
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 34555533 3445556666543221 26889999999999999999998 44444444556654
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.56 E-value=4.3e-07 Score=66.72 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=37.0
Q ss_pred CCCCccccHHHHHHHHHHHhc---CC-------CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---GP-------PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+..++.|.+++.. .. .....+.++|.+|+|||++|+.+++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346789999988888776532 11 2345688999999999999999988
No 21
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=1.4e-07 Score=71.35 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=39.2
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|++..++.|.+++..+. .+.+.++|++|+|||++|+.+++
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH
Confidence 4569999999999999997753 34589999999999999999988
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.49 E-value=4.1e-07 Score=69.41 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=38.8
Q ss_pred CCCCccccHHHHHHHHHHHh----------cCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLI----------EGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..+++|.+.+. ......+-+.++|.+|+|||+||+++++
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45679999999999998873 1112345789999999999999999988
No 23
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.48 E-value=8.2e-07 Score=67.15 Aligned_cols=48 Identities=27% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..+++|.+++.. +-.....+.++|++|+|||+||+.+++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 345799999999999887743 123356789999999999999999998
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.46 E-value=9.9e-07 Score=66.15 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCCCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..++.|.+++... ......+.|+|++|+|||++|+.++.
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3467999999999998887421 11246789999999999999999988
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.45 E-value=2.1e-06 Score=65.63 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=38.3
Q ss_pred CCCCccccHHHHHHHHHHHhc---------C-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---------G-PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+..++.|.+.+.. + ....+.+.++|++|+|||+||+++++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 456799999999999887631 1 12346788999999999999999998
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=1e-06 Score=71.43 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=40.0
Q ss_pred CCCCccccHHHHHHHHHHHhcC---------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG---------------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|++..+++|.+|+... ....+.+.|+|++|+|||++|+.+++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999641 01346899999999999999999988
No 27
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.41 E-value=3.1e-06 Score=60.37 Aligned_cols=99 Identities=15% Similarity=0.020 Sum_probs=57.3
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC-------C
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS-------R 125 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~-------~ 125 (157)
.|-+++..+-....++.|+|.+|+|||||+..+.. ..-...+|++....++...+.. ++..++... .
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFI 81 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEE
Confidence 34444433334456999999999999999998876 1224577888776566655443 333222100 0
Q ss_pred Ccc-cccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 126 LSE-IKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 126 ~~~-~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
... .......+.+..++..+..+.-+||||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECC
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCc
Confidence 000 11112244566666666555779999974
No 28
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.40 E-value=2e-06 Score=65.35 Aligned_cols=47 Identities=15% Similarity=0.031 Sum_probs=39.4
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+..++.|.+++..+. ...++.+.|++|+|||++|+.+.+
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 34679999999999999998653 235677788899999999999988
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.40 E-value=1.3e-06 Score=69.53 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=33.7
Q ss_pred CCcc-ccHH--HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTV-GLDD--RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
++|+ |... ....+......... ...+.|+|.+|+||||||+.+++ .+...|
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~ 158 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNE 158 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHC
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence 4565 6433 33444444444332 66899999999999999999998 554443
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.40 E-value=8.6e-07 Score=68.66 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=38.8
Q ss_pred CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..+++|.+.+.. .......+.|+|.+|+|||+||+.+++
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999888742 112356789999999999999999988
No 31
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.39 E-value=1.9e-06 Score=63.38 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCCCccccHHHHHHHHHHHhc---C-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---G-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+..+++|.+++.. . ....+-+.|+|.+|+||||||+.+++
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 446789999888887765431 1 11234588999999999999999988
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.39 E-value=3.9e-06 Score=64.61 Aligned_cols=47 Identities=30% Similarity=0.243 Sum_probs=37.0
Q ss_pred CCCccccHHHHHHH---HHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEEL---LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.++|++..++.+ ...+..+......+.|+|++|+|||++|+.+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999987775 444444443346899999999999999999988
No 33
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.37 E-value=2.5e-06 Score=64.90 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=32.5
Q ss_pred CCCcc-cc--HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTV-GL--DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~v-Gr--~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|+ |. ......+..++.........+.|+|++|+||||||+.+++
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34555 43 3334555555555433456789999999999999999988
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.36 E-value=1.2e-06 Score=66.92 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred CCCCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|++..+++|..++... ......+.|+|.+|+|||+||+.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3467999999999999988642 23445689999999999999999987
No 35
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.36 E-value=2.2e-06 Score=65.96 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=38.9
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|++..++.|.+.+..+. ....+.|+|.+|+||||+|+.+.+
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3569999999999999997653 234678999999999999999977
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.35 E-value=4.5e-07 Score=68.67 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=46.9
Q ss_pred CCCCccccHHHHHHHHHHHhc---CCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHH
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQIL 113 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l 113 (157)
....++|++..++.|..++.. .......+.|+|++|+|||++|+.+++ ..... ..+++.+......++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~---~~~~~~~~~~~~~~l~ 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVN---LRVTSGPAIEKPGDLA 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCC---EEEECTTTCCSHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEeccccCChHHHH
Confidence 346799999999999888753 112345788999999999999999988 33322 2345544443444433
No 37
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.34 E-value=1e-06 Score=66.34 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=35.7
Q ss_pred CccccHHHHHHHHHHHhcC-------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLIEG-------------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|.+..++.|.+++... ......+.|+|.+|+|||++|+.+++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999998888776421 23345789999999999999998877
No 38
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.33 E-value=1e-06 Score=61.42 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 47 LDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 47 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....++.+.+++..-. .....+.|+|++|+||||||+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4445555555554322 2356899999999999999999988
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.31 E-value=3.3e-06 Score=67.42 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=38.9
Q ss_pred CCCCccccHHHH---HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRM---EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..+ ..|...+..+. ...+.++|.+|+||||||+.+++
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 446799999888 77888787654 46789999999999999999988
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.30 E-value=1.4e-06 Score=67.50 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999887731 112234588999999999999999998
No 41
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=4.7e-06 Score=66.28 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=40.1
Q ss_pred CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
+++.|.++.+++|.+.+.. +-...+-+.++|++|+|||+||+++++ +...+|
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~ 243 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF 243 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence 5688999999998887642 123456788999999999999999998 444333
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.29 E-value=2.1e-06 Score=73.57 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=38.2
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++||+.+++.+...|.... ...+.++|.+|+|||++|+.+++
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999987643 33568999999999999999987
No 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.29 E-value=3.9e-06 Score=65.58 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=38.5
Q ss_pred CCCCccccHHHHHHHHHHHhcC----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..++.|.+++... ......+.|+|.+|+|||+||+.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999887320 11246789999999999999999987
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.25 E-value=1.3e-06 Score=65.64 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=38.1
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|++..++.|.+++..+. .+.+.++|++|+|||++|+.+++
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH
Confidence 4569999999999998887643 33488999999999999999987
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.25 E-value=2.9e-06 Score=67.58 Aligned_cols=48 Identities=23% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCCCccccHHHHHHHHHHHhc---------C-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---------G-PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+..++.|.+.+.. + ....+.+.++|++|+|||+||+.+++
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999887731 0 12346788999999999999999998
No 46
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.23 E-value=1.7e-06 Score=58.45 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=35.5
Q ss_pred CccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 43 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.++|+...++++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999998887542222345789999999999999999883
No 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.22 E-value=4.1e-06 Score=66.85 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=37.3
Q ss_pred CCCCccccHHHHHHHHHHH---hcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLL---IEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+.++|.++.++.+..++ ..+....+-+.++|++|+|||+||+.+.+
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3478999999988765554 33333345688999999999999999988
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.21 E-value=5.7e-06 Score=61.35 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=35.2
Q ss_pred CCCccccHHHHHHHHH-------HHhc-CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLD-------LLIE-GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|....++++.. .+.. .......+.|+|.+|+|||+||+.+++
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3467888777666665 2321 234567889999999999999999988
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=2.4e-06 Score=67.22 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=39.9
Q ss_pred CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
+++.|.++.+++|.+.+.. +-...+-+.++|++|+|||.||+++++ +....|
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 5688999999999877642 123345688999999999999999998 454443
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.20 E-value=3.6e-06 Score=67.92 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=37.9
Q ss_pred CCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..+++|.+++... .....-+.|+|.+|+|||++|+++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 56899999999998887531 23345688999999999999999988
No 51
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=3.5e-06 Score=67.31 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=40.4
Q ss_pred CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
+++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++ +....|
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 5789999999999876532 223456788999999999999999998 554443
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=3.9e-06 Score=66.63 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
+++.|.++..++|.+.+.. +-...+-+.++|++|+|||+||+++++ +...+|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 5789999999999887642 123345688999999999999999998 444333
No 53
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.19 E-value=9.9e-06 Score=62.85 Aligned_cols=99 Identities=19% Similarity=0.050 Sum_probs=62.4
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-ccc
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL-SEI 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-~~~ 129 (157)
..|-..|. .+-....++.|+|.+|+||||||..+.. .....=..++|++....++.. .+..++..... .-.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~ 119 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLIS 119 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhh
Confidence 45555554 3334567999999999999999998887 333222346788877766654 34555442110 002
Q ss_pred ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
...+.++.+..+...++ .+.-++|+|.|
T Consensus 120 ~~~~~e~~l~~~~~l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 120 QPDHGEQALEIVDELVRSGVVDLIVVDSV 148 (356)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred hccCHHHHHHHHHHHhhhcCCCeEEehHh
Confidence 23456677777776664 45568999975
No 54
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.17 E-value=1.1e-05 Score=68.03 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++||+.+++.+.+.|.... ...+.++|.+|+|||++|+.+++
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999887643 34678999999999999999987
No 55
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=3.3e-06 Score=67.16 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=40.3
Q ss_pred CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
.+++.|.++.+++|.+.+.. +-...+-+.++|++|+|||.||+++++ +...+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 36789999999999876531 123456788999999999999999998 444433
No 56
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.14 E-value=1.1e-05 Score=64.94 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=36.4
Q ss_pred CCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.++.+++|.+++.. . ....+-+.++|++|+|||+||+.++.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345799999988888776532 1 11223488999999999999999988
No 57
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.13 E-value=1.4e-05 Score=60.96 Aligned_cols=105 Identities=19% Similarity=0.138 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc----cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR-- 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-- 125 (157)
..|-.+|..+-....++.|+|.+|+|||+||..+......... -..++|++....++..++... +..++.+..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~g~~~~~~ 172 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKALGLDIDNV 172 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHTTCCHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHhCCCHHHH
Confidence 3344444333234569999999999999999888763211111 246789998888777766543 445443210
Q ss_pred ---CcccccccHH---HHHHHHHHHhc--CCcEEEEeeCC
Q 045087 126 ---LSEIKDKNYE---MKKIILHEYLM--TKRYLIVIDDV 157 (157)
Q Consensus 126 ---~~~~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdV 157 (157)
..-....+.+ +++..+...++ .+.-+||+|.+
T Consensus 173 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 173 MNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 0001112223 45566666664 45679999975
No 58
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.12 E-value=2.4e-05 Score=60.29 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-- 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-- 125 (157)
..|-.+|..+-....++.|+|.+|+|||+||..++....... .-..++|++....++...+... +..++.+..
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~-~~~~g~~~~~~ 187 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRFNVDHDAV 187 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH-HHHTTCCHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHcCCCHHHH
Confidence 334444433334567999999999999999988876321211 1246789998887777765543 344433210
Q ss_pred -----Ccc-cccccHHHHHHHHHHHhc---CCcEEEEeeCC
Q 045087 126 -----LSE-IKDKNYEMKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 126 -----~~~-~~~~~~~~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
... .......+++..+.+.+. .+.-|||+|.+
T Consensus 188 l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 188 LDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp HHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 000 111222344555556554 45679999975
No 59
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.12 E-value=4e-06 Score=64.23 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=44.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEc--CCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQE--PYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIIL 141 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l 141 (157)
..+++.|+|++|+|||+||.++... .-..+.|++. ....+. -..+.++.+..+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------~~~~le~~l~~i 176 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------YNTDFNVFVDDI 176 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------------CBCCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------------hhcCHHHHHHHH
Confidence 3457789999999999999998872 1223456665 322110 013456666667
Q ss_pred HHHhcCCcEEEEeeCC
Q 045087 142 HEYLMTKRYLIVIDDV 157 (157)
Q Consensus 142 ~~~L~~kr~LlVlDdV 157 (157)
.+.+...+ |||+|++
T Consensus 177 ~~~l~~~~-LLVIDsI 191 (331)
T 2vhj_A 177 ARAMLQHR-VIVIDSL 191 (331)
T ss_dssp HHHHHHCS-EEEEECC
T ss_pred HHHHhhCC-EEEEecc
Confidence 77776666 9999986
No 60
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.08 E-value=2.1e-05 Score=60.88 Aligned_cols=99 Identities=19% Similarity=0.051 Sum_probs=60.3
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCC-ccc
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL-SEI 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~-~~~ 129 (157)
..|-.+|. .+-....++.|+|.+|+||||||..+.. .....=..++|++....++.. .+..++..... .-.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVS 119 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEe
Confidence 44545554 3334567999999999999999988876 333222457889887766643 23444432110 001
Q ss_pred ccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
...+.++....+....+ .+.-+||+|.+
T Consensus 120 ~~~~~e~~l~~~~~l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 120 QPDTGEQALEIADMLVRSGALDIIVIDSV 148 (349)
T ss_dssp CCSSHHHHHHHHHHHHTTTCCSEEEEECG
T ss_pred cCCCHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 22345666666666554 34569999974
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.08 E-value=8.4e-06 Score=58.60 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=40.8
Q ss_pred CCCCcccc---HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcC
Q 045087 40 KSRDTVGL---DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEP 104 (157)
Q Consensus 40 ~~~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 104 (157)
..++|+|. +..++.|..++... ....+.|+|.+|+||||||+.+++ ..........|++..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 34567763 45666776666553 356889999999999999999987 443333344555543
No 62
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.07 E-value=2.5e-05 Score=60.82 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=61.9
Q ss_pred HHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccc
Q 045087 51 MEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSE 128 (157)
Q Consensus 51 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~ 128 (157)
...|-.+|. .+-....++.|+|.+|+||||||..+.. .....-..++|++....++.. .+..++.+.. ..-
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i 131 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLV 131 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHcee
Confidence 345555554 2334456899999999999999988876 332223467899988776643 2344443211 000
Q ss_pred cccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 129 IKDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 129 ~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
....+.+++...+...++. ..-+||+|.+
T Consensus 132 ~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 132 SQPDNGEQALEIMELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECT
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 1234567777777776653 4469999975
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.07 E-value=3.2e-06 Score=63.58 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=42.9
Q ss_pred CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
..++|.+..++.|...+... ......+.++|.+|+|||++|+.+++ .....-...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence 35789999988888877542 11235799999999999999999988 3332222334555443
No 64
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.06 E-value=3e-05 Score=56.03 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCC----
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSS---- 124 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~---- 124 (157)
.|-++|..+-....++.|+|.+|+|||||+..+........ .-...+|++....+....+. .++..++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~ 90 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVL 90 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHh
Confidence 34444433323456999999999999999998876211111 12467888877765655443 3344443221
Q ss_pred -CCcccccccHH---HHHHHHHHHhc-CCcEEEEeeCC
Q 045087 125 -RLSEIKDKNYE---MKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 125 -~~~~~~~~~~~---~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
...-....+.. +....+.+.+. .+.-+||||++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 91 DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 00001112222 23444555554 46789999974
No 65
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.04 E-value=4.9e-05 Score=58.12 Aligned_cols=98 Identities=8% Similarity=0.021 Sum_probs=60.2
Q ss_pred HHHHHHHh----cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccc--cCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC
Q 045087 52 EELLDLLI----EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY--FDCHAWVQEPYTCYADQILDIIIKFLMPSSR 125 (157)
Q Consensus 52 ~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~ 125 (157)
..|-..|- .+-... ++.|+|.+|+||||||.++.. ..... =..++|++....++.. .++.++.+.+
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d 83 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPE 83 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGG
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHH
Confidence 44555555 333333 789999999999999987766 33333 2467899988877754 2566665322
Q ss_pred C-cccccccHHHH-HHHHHHH--h-cCCcEEEEeeCC
Q 045087 126 L-SEIKDKNYEMK-KIILHEY--L-MTKRYLIVIDDV 157 (157)
Q Consensus 126 ~-~~~~~~~~~~~-~~~l~~~--L-~~kr~LlVlDdV 157 (157)
. --....+.++. +..+... + +++.-|||+|.|
T Consensus 84 ~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 84 RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECS
T ss_pred HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecc
Confidence 1 00223455665 5444333 3 456789999975
No 66
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=9.2e-06 Score=64.37 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=39.9
Q ss_pred CCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc
Q 045087 42 RDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF 95 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 95 (157)
+++.|.++..++|.+.+.. +-...+-+.++|++|+|||.||+++++ +....|
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 5688999999998877632 113356788999999999999999998 444443
No 67
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.04 E-value=8.8e-06 Score=69.34 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred CCCccccHHHHHHHHHHHhc-----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..+++|.+++.. .-.....+.|+|.+|+||||||+.+..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 36789999999999888753 123345789999999999999999988
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.1e-05 Score=61.71 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=37.8
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-..++|.+..++.|...+..+. .+.+.++|++|+||||+|+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999988887764 33388999999999999999987
No 69
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.03 E-value=2.2e-05 Score=59.75 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc---------cc-----CeeEEEEcCCCCCHHHHHHHHH
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH---------YF-----DCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
..|-.+|..+-....++.|+|.+|+|||+||..++....... .. ..++|++....++..++... +
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~ 163 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-A 163 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-H
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-H
Confidence 445444433334567999999999999999988875321211 11 46789998888777766644 4
Q ss_pred HHhCCCCC-----CcccccccHH---HHHHHHHHHhcC--CcEEEEeeCC
Q 045087 118 KFLMPSSR-----LSEIKDKNYE---MKKIILHEYLMT--KRYLIVIDDV 157 (157)
Q Consensus 118 ~~l~~~~~-----~~~~~~~~~~---~~~~~l~~~L~~--kr~LlVlDdV 157 (157)
..++.+.. ..-....+.+ +++..+.+.+.. +.-|||+|.+
T Consensus 164 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 164 EHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred HHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 45543210 0001112223 455566666654 4569999975
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.03 E-value=1.5e-06 Score=58.69 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=33.8
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-.++|++..++++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46789999999988887531112345789999999999999999883
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.01 E-value=3e-05 Score=65.99 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=39.5
Q ss_pred CCCccccHHHHHHHHHHHhc----C-------CCCceEEEEEeCCCCcHHHHHHHHhcCcccccc
Q 045087 41 SRDTVGLDDRMEELLDLLIE----G-------PPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY 94 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 94 (157)
.+++.|.++.+++|.+++.. . -...+-|.++|++|+|||+||+++++ +...+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~ 265 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF 265 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCE
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCe
Confidence 35688999999888877631 1 12356789999999999999999999 44433
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.99 E-value=9.5e-06 Score=61.65 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCC-CCceEEEEEeCCCCcHHHHHHHHhcCcccc-cccCeeEEEEc
Q 045087 48 DDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSSNYMK-HYFDCHAWVQE 103 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~ 103 (157)
...++.+.+++.... .....+.++|.+|+|||+||.++++ ... ..-....++++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 334455556665422 1246788999999999999999988 443 33223445543
No 73
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.98 E-value=6.8e-05 Score=55.94 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCCCccccHHHHHHHHHHHhc---C---------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE---G---------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.|.++..++|.+.+.. . ..... +.++|++|+||||||+.++.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 346788888888888775421 0 11222 89999999999999999988
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.98 E-value=7.2e-06 Score=61.80 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999998
No 75
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.96 E-value=7.3e-06 Score=65.71 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=38.3
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|++.+++.+...|.... ...+.++|.+|+|||++|+.+++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 3569999999999999987643 34567999999999999999987
No 76
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.94 E-value=1e-05 Score=59.65 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..++|....+.++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999998888776532122356789999999999999999883
No 77
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.93 E-value=7.8e-06 Score=55.67 Aligned_cols=40 Identities=8% Similarity=-0.017 Sum_probs=27.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY 105 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 105 (157)
....+.|+|..|+|||||++.++. .....-...+++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA--QALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH--HHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEcHHH
Confidence 346899999999999999999988 3322111245665443
No 78
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=9.8e-06 Score=61.82 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....++|++..++.|..++..+. .+.+.++|.+|+||||+|+.+.+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence 34679999999999999987653 23388999999999999999988
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.90 E-value=6.4e-05 Score=60.78 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=36.7
Q ss_pred CCCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 39 SKSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+++|.++.+++|.++... . ..-.+-+.|+|.+|+|||+||+.++.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999988888776532 1 01123389999999999999999988
No 80
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.90 E-value=5.4e-05 Score=58.71 Aligned_cols=100 Identities=17% Similarity=0.001 Sum_probs=59.7
Q ss_pred HHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccc
Q 045087 51 MEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSE 128 (157)
Q Consensus 51 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~ 128 (157)
...|-.+|. .+-....++.|+|.+|+||||||..+.. .....-..++|++....++... +..++...+ ..-
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i 120 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLC 120 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheee
Confidence 345545554 3334556999999999999999988876 3332234678999877766432 344443211 000
Q ss_pred cccccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 129 IKDKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 129 ~~~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
....+.+++.+.+....+ .+.-+||+|.+
T Consensus 121 ~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 121 SQPDTGEQALEICDALARSGAVDVIVVDSV 150 (356)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEEECG
T ss_pred eCCCCHHHHHHHHHHHHhccCCCEEEEcCH
Confidence 122345666666655543 44569999974
No 81
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.88 E-value=4e-05 Score=58.26 Aligned_cols=42 Identities=21% Similarity=0.179 Sum_probs=36.3
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|++..++.+...+..+ ..+.++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 57899999999988887764 2688999999999999999977
No 82
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.85 E-value=8.4e-06 Score=61.02 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCccccHHHHHHHHHHHhc------------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIE------------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++|.+..++.|...+.. .......+.++|.+|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999887754 012245678999999999999999987
No 83
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.81 E-value=0.00015 Score=55.09 Aligned_cols=64 Identities=19% Similarity=0.060 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
...|-+++ .+-....++.|.|.+|+||||+|..++.+...+ . ..++|++.. .+..++...++..
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-T-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C-CeEEEEECC--CCHHHHHHHHHHH
Confidence 34455545 443456689999999999999998887532222 2 567788765 3556666665543
No 84
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.79 E-value=1.5e-05 Score=61.05 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCCccccHHHHHHHHHHHhcC---CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-+.++|.+..++.|...+..+ ......+.++|++|+||||||+.++.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456889988888887766532 22345789999999999999999987
No 85
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.78 E-value=1.1e-05 Score=59.42 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=36.2
Q ss_pred CCCCccccHHHHHHHHHHHhc----------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+..+++|.+.+.. +.....-+.++|.+|+|||+||+.+++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 346799999888888876641 111123477999999999999999988
No 86
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.76 E-value=2.6e-05 Score=59.05 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=36.8
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++|....+.++.+.+..-......+.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4689999999999888754222344678999999999999999987
No 87
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.76 E-value=0.00019 Score=51.20 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=31.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHH
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYAD 110 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~ 110 (157)
....+++|+|.+|+|||||++.++....... .-...+|+.-...+...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 3457999999999999999999865211110 12346777765544443
No 88
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.75 E-value=2.4e-05 Score=66.07 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=38.5
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|++.+++++...|.... ..-+.++|.+|+|||++|+.+++
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997643 33578999999999999999987
No 89
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.75 E-value=0.00012 Score=56.61 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccccc---C-eeEEEEcCCCCCHHHHHHHHHHHhCCCCC---
Q 045087 53 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYF---D-CHAWVQEPYTCYADQILDIIIKFLMPSSR--- 125 (157)
Q Consensus 53 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~-~~~wv~~~~~~~~~~~l~~i~~~l~~~~~--- 125 (157)
.|-.+|..+-....++.|+|.+|+|||||+..++......... . .++|++....+....+ ..++........
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHG
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHh
Confidence 3434443333456799999999999999999887732111111 2 3488887665544433 334433322110
Q ss_pred ----Ccc-cccccHHHHHHHHHHHhc------CCcEEEEeeCC
Q 045087 126 ----LSE-IKDKNYEMKKIILHEYLM------TKRYLIVIDDV 157 (157)
Q Consensus 126 ----~~~-~~~~~~~~~~~~l~~~L~------~kr~LlVlDdV 157 (157)
... .......+++..+...+. .+.-|||||.+
T Consensus 198 ~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 198 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp GGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred hCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 000 111223455566666664 46789999974
No 90
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=2.3e-05 Score=59.98 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=36.6
Q ss_pred CCCccccHHHHHHHHHHH-hcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 41 SRDTVGLDDRMEELLDLL-IEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 41 ~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.+..++.|.+++ ..+. .+.+.|+|++|+||||+|+.++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD--LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC--CCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999888 4433 23389999999999999998866
No 91
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.73 E-value=0.00042 Score=52.18 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=23.3
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 61 GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 61 ~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
......+|+|+|.+|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999998876
No 92
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.71 E-value=3.5e-05 Score=59.51 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=35.1
Q ss_pred CccccHHHHHHHHHHHh-------------cCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLI-------------EGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|.+..++.|...+. ........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46898888888887773 1111345788999999999999999987
No 93
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=0.00024 Score=53.87 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
|.++.++.|.+.+..+. .+...++|++|+||||+|..+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHH
Confidence 45666778888887664 67888999999999999999876
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.67 E-value=0.00018 Score=51.34 Aligned_cols=49 Identities=18% Similarity=0.047 Sum_probs=31.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
...++.|+|.+|+|||||+..++. .....-....|++... +..++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHH
Confidence 346899999999999999999885 2222222455666443 344444443
No 95
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=7.7e-05 Score=52.87 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHhcC-CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 47 LDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 47 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
|++.+++|.+.+... .....+++|+|.+|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 566778888887653 23567999999999999999998876
No 96
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.67 E-value=0.00031 Score=55.24 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc----ccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC--
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-- 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-- 125 (157)
..|-++|..+-....++.|+|.+|+|||||+..++-...... .-...+|++....+....+. .++..++....
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~v 243 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDA 243 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhH
Confidence 445444433334456999999999999999996642111111 22457888877766655443 35555543210
Q ss_pred ---CcccccccH---HHHHHHHHHHh-cCCcEEEEeeCC
Q 045087 126 ---LSEIKDKNY---EMKKIILHEYL-MTKRYLIVIDDV 157 (157)
Q Consensus 126 ---~~~~~~~~~---~~~~~~l~~~L-~~kr~LlVlDdV 157 (157)
..-....+. .+.+..+...+ ..+.-|||+|.+
T Consensus 244 leni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 244 LNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred hhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 000111122 23334444444 345679999974
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.65 E-value=5e-05 Score=54.11 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-+++|.+.+........+++|+|.+|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555565544334567999999999999999998877
No 98
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.60 E-value=7.5e-05 Score=60.39 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.+...+..+. .+.++|.+|+|||+||+.+.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHH
Confidence 468999999998888777653 788999999999999999988
No 99
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.57 E-value=7.1e-05 Score=54.76 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=34.7
Q ss_pred CCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|.+....++.++... . -.-.+-+.|+|.+|+||||||+.++.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789998887777665431 1 01112388999999999999999988
No 100
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.54 E-value=0.00018 Score=58.76 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=34.8
Q ss_pred CccccHHHHHHHHHHHhc----CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+++|.++..+.+.+.+.. .......+.++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 478888887777655431 222456899999999999999999988
No 101
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.52 E-value=9.8e-05 Score=57.20 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCccccHHHHHHHHHHHhc----------------------------CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIE----------------------------GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.|...+.. .......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578888888888766620 011234688999999999999999988
No 102
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.52 E-value=5e-05 Score=52.38 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999877
No 103
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.51 E-value=3.6e-05 Score=55.94 Aligned_cols=87 Identities=11% Similarity=-0.125 Sum_probs=45.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcccccccHHHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSEIKDKNYEMKKIILHE 143 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 143 (157)
...++.++|..|.||||++..+.+ +...+-...+.+...... . ....+++.++.... .....+..++.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~--~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLP--SVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSC--CEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCcc--ccccCCHHHHHHHHHH
Confidence 357888999999999999977766 333332223333322111 1 11123333332111 1122334556666666
Q ss_pred HhcCCcE-EEEeeCC
Q 045087 144 YLMTKRY-LIVIDDV 157 (157)
Q Consensus 144 ~L~~kr~-LlVlDdV 157 (157)
.+.+.++ +|++|.+
T Consensus 84 ~~~~~~~dvViIDEa 98 (223)
T 2b8t_A 84 NSFNDETKVIGIDEV 98 (223)
T ss_dssp TTSCTTCCEEEECSG
T ss_pred HhhCCCCCEEEEecC
Confidence 5554544 8888864
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.51 E-value=0.00038 Score=64.24 Aligned_cols=98 Identities=17% Similarity=0.015 Sum_probs=61.3
Q ss_pred HHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Ccccc
Q 045087 53 ELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEIK 130 (157)
Q Consensus 53 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~~ 130 (157)
.|..+|. .+-...+.+.|+|++|+|||+||.++.. +....=..++|+++...++... +..++.+-. ..-..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~ 1486 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQ 1486 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeec
Confidence 3555554 2224567999999999999999998877 4443334577888888777655 344442211 00011
Q ss_pred cccHHHHHHHHHHHhc-CCcEEEEeeCC
Q 045087 131 DKNYEMKKIILHEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 131 ~~~~~~~~~~l~~~L~-~kr~LlVlDdV 157 (157)
..+.++....+.+..+ .+..+||+|.+
T Consensus 1487 ~~~~E~~l~~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1487 PDTGEQALEICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 2234566666666543 56679999975
No 105
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00083 Score=48.35 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=31.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDII 116 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i 116 (157)
...++.|+|.+|+||||||..++.. ....=...+|++... +..++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~--~~~~~~~~~ 70 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE--HPVQVRQNM 70 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS--CHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC--CHHHHHHHH
Confidence 4568999999999999999877652 222223566777544 344444433
No 106
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.49 E-value=0.0014 Score=52.82 Aligned_cols=91 Identities=8% Similarity=-0.007 Sum_probs=54.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEcCCCCCHHHHHHHHHHHhCC-CCC---------------
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQEPYTCYADQILDIIIKFLMP-SSR--------------- 125 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~l~~i~~~l~~-~~~--------------- 125 (157)
....++.|.|.+|+||||||..++.+ .... =..++|++... +..++...++..... +..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~ 315 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKF 315 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHHcCCChhhccccccCCCCHHHH
Confidence 44568899999999999999888763 3222 23567777644 455666665443322 100
Q ss_pred ----------Cc----c-cccccHHHHHHHHHHHhcC-CcEEEEeeCC
Q 045087 126 ----------LS----E-IKDKNYEMKKIILHEYLMT-KRYLIVIDDV 157 (157)
Q Consensus 126 ----------~~----~-~~~~~~~~~~~~l~~~L~~-kr~LlVlDdV 157 (157)
.+ . ....+.+++...+++.... +.-+||+|.+
T Consensus 316 ~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l 363 (503)
T 1q57_A 316 DQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHI 363 (503)
T ss_dssp HHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccc
Confidence 00 0 0124567777777776543 3458899964
No 107
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.49 E-value=5.9e-05 Score=51.40 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCcHHHHHHHH
Q 045087 66 SAVTILDSIGLDKTAFAAEA 85 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v 85 (157)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 108
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.49 E-value=0.00083 Score=51.27 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++..+.|.+.+..+. -.+.+.++|.+|+|||++|+.+.+
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 555677777776543 345688999999999999998876
No 109
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.49 E-value=0.00054 Score=54.44 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 110
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.49 E-value=0.00055 Score=52.67 Aligned_cols=100 Identities=16% Similarity=-0.018 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCC--------
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS-------- 123 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~-------- 123 (157)
..|-+++ .+-....++.|.|.+|+||||+|..++.+. ...=..++|++.. .+..++...++.....-
T Consensus 34 ~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~--a~~g~~Vl~fSlE--ms~~ql~~Rlls~~~~v~~~~l~~g 108 (338)
T 4a1f_A 34 VQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSA--LNDDRGVAVFSLE--MSAEQLALRALSDLTSINMHDLESG 108 (338)
T ss_dssp HHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHH--HHTTCEEEEEESS--SCHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred hHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCC--CCHHHHHHHHHHHhhCCCHHHHhcC
Confidence 3444444 333445689999999999999998887732 2222356677754 35566666665432110
Q ss_pred ---------------------CCCcccccccHHHHHHHHHHHhcC--CcEEEEeeC
Q 045087 124 ---------------------SRLSEIKDKNYEMKKIILHEYLMT--KRYLIVIDD 156 (157)
Q Consensus 124 ---------------------~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDd 156 (157)
-........+..++...+++..+. ..-|||+|.
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 000001233567777777776543 467889885
No 111
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.48 E-value=0.00052 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999998876
No 112
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.46 E-value=0.00043 Score=55.74 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=57.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccc-ccccCeeEEEEcCCCCC-HHHHHHHHHHHhCCC-------CCC---ccccc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYM-KHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPS-------SRL---SEIKD 131 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~-~~~~l~~i~~~l~~~-------~~~---~~~~~ 131 (157)
+...++|.|.+|+|||+|+..+.+ .+ +.+-+.++++.++.... ..+++..+...=... ... ...+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred cCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 345789999999999999988877 33 23456788888887654 667777776532111 000 00111
Q ss_pred cc-----HHHHHHHHHHHhc---CCcEEEEeeCC
Q 045087 132 KN-----YEMKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 132 ~~-----~~~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
.. .....-.+.++++ ++.+||++||+
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 1122334555664 57899999996
No 113
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.44 E-value=0.00024 Score=56.94 Aligned_cols=51 Identities=8% Similarity=0.117 Sum_probs=35.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccc-cCeeEEEEcCCCCC-HHHHHHHHHH
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHY-FDCHAWVQEPYTCY-ADQILDIIIK 118 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~-~~~~l~~i~~ 118 (157)
..+.|+|.+|+|||||+..+..+ .... -..++++.+++..+ ..+++..+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 36889999999999999988873 3322 24557777777643 4455555543
No 114
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.43 E-value=0.00013 Score=54.14 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=35.8
Q ss_pred CCCCCccccHHHHHHHHHHHhc--C--------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 39 SKSRDTVGLDDRMEELLDLLIE--G--------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 39 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++++|.+...+++.++... . -.-.+-+.|+|.+|+||||||+.++.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 3456799999888887766532 1 01112388999999999999999988
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.43 E-value=0.00011 Score=51.18 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 116
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.43 E-value=0.0014 Score=52.07 Aligned_cols=64 Identities=20% Similarity=-0.017 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHH
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKF 119 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~ 119 (157)
..|-+++ .+-....++.|.|.+|+||||+|..++.+.... .=..++|++.. .+..++...++..
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4454444 444456789999999999999998887732211 12356777765 3456666666543
No 117
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.42 E-value=0.00066 Score=51.51 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcC------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 50 RMEELLDLLIEG------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 50 ~~~~l~~~L~~~------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-.++|.+.|... .....++.|+|.+|+||||++..++.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence 345555555332 13457999999999999999988876
No 118
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.42 E-value=0.00034 Score=56.07 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCccc-ccccCeeEEEEcCCCC-CHHHHHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYM-KHYFDCHAWVQEPYTC-YADQILDIIIKF 119 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~-~~~~~l~~i~~~ 119 (157)
-..++|.|.+|+|||+|+..+.+ .+ +.+-+.++++.++... ...+++..+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 45789999999999999988877 32 2334567888888765 356777777654
No 119
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.42 E-value=0.0082 Score=47.64 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 50 RMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 50 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-.++|.++|... ....++|.++|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345666666432 13467999999999999999988875
No 120
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.42 E-value=7.2e-05 Score=51.08 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.41 E-value=0.00087 Score=53.37 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988865
No 122
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.40 E-value=8.3e-05 Score=56.61 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=33.9
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+.++|.+..++.+...+.... ...+.++|.+|+|||+||+.+++
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 34568999887666544443322 23488999999999999999987
No 123
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.37 E-value=0.0001 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 124
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.37 E-value=0.0004 Score=59.12 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=37.0
Q ss_pred CCCCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+.|.++..++|.+.+... ....+-+.++|++|.|||.||+++++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 3456788999888888776421 12344578999999999999999999
No 125
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.36 E-value=0.0013 Score=52.36 Aligned_cols=62 Identities=19% Similarity=0.059 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIK 118 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~ 118 (157)
..|-+++ .+-....++.|.|.+|+||||+|..++.+...+ =..++|++... +..++...++.
T Consensus 185 ~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 185 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 3444444 333455689999999999999998887732222 23566776543 33344444443
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.0001 Score=52.10 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 127
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.35 E-value=0.0015 Score=50.00 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|+||||++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998876
No 128
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.34 E-value=0.001 Score=52.91 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=34.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
....++.|.|.+|+||||||..++.+.... .-..++|++... +..++...++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 445699999999999999998887732211 112567777543 3455555543
No 129
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.32 E-value=0.00011 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.|.++|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999976
No 130
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.32 E-value=0.00016 Score=50.37 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 131
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.32 E-value=0.00026 Score=56.37 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCccccHHHHHHHHHHHhcC------------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.++.++.|...+... ....+-+.++|++|+|||++|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56899998888887666321 11235688999999999999999987
No 132
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.31 E-value=0.00014 Score=50.45 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 133
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.30 E-value=0.00016 Score=51.12 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.|+|++|.|||||++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.29 E-value=0.0001 Score=50.50 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 135
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.28 E-value=0.00027 Score=51.67 Aligned_cols=40 Identities=15% Similarity=-0.024 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+.++.+.+.........|.|.|++|+||||+|+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344455444433223467899999999999999998865
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00015 Score=50.38 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 137
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00049 Score=48.44 Aligned_cols=23 Identities=13% Similarity=-0.070 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 138
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.24 E-value=0.00038 Score=58.83 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=36.6
Q ss_pred CCccccHHHHHHHHHHHhcCC-------CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGP-------PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.+.+.+.... .....+.++|.+|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999988888775321 1223689999999999999999987
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.24 E-value=0.00026 Score=48.68 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 140
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.24 E-value=0.00019 Score=52.61 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=21.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+..+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998876
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.23 E-value=0.00017 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999877
No 142
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.23 E-value=0.0013 Score=60.88 Aligned_cols=101 Identities=16% Similarity=-0.023 Sum_probs=64.0
Q ss_pred HHHHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc
Q 045087 50 RMEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE 128 (157)
Q Consensus 50 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~ 128 (157)
-...|-.+|. .+-....++.|+|.+|+||||||..+.. .....-..++|++...+++... +..++.+...-.
T Consensus 367 G~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~ 439 (2050)
T 3cmu_A 367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLL 439 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCE
T ss_pred CCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeE
Confidence 3455655554 3334567999999999999999988877 3333334678888877776432 445544321000
Q ss_pred -cccccHHHHHHHHHHHh-cCCcEEEEeeCC
Q 045087 129 -IKDKNYEMKKIILHEYL-MTKRYLIVIDDV 157 (157)
Q Consensus 129 -~~~~~~~~~~~~l~~~L-~~kr~LlVlDdV 157 (157)
....+.+++.+.++... .++.-|||+|.+
T Consensus 440 I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL 470 (2050)
T 3cmu_A 440 CSQPDTGEQALEICDALARSGAVDVIVVDSV 470 (2050)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCSEEEESCG
T ss_pred EeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 12345677777777655 345679999964
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.22 E-value=0.00013 Score=51.43 Aligned_cols=23 Identities=9% Similarity=0.201 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.21 E-value=0.0002 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|++|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 145
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.20 E-value=0.0011 Score=60.49 Aligned_cols=99 Identities=17% Similarity=0.010 Sum_probs=62.6
Q ss_pred HHHHHHHh-cCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 045087 52 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LSEI 129 (157)
Q Consensus 52 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~-~~~~ 129 (157)
..|-.+|. .+-....++.|+|.+|+||||||.++.. .....=..++|++...+++.. .+..++.+.+ .--.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~ 441 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCS 441 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEE
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEc
Confidence 45555554 3334567999999999999999988876 333333468899888777653 1445544221 0002
Q ss_pred ccccHHHHHHHHHHHh-cCCcEEEEeeCC
Q 045087 130 KDKNYEMKKIILHEYL-MTKRYLIVIDDV 157 (157)
Q Consensus 130 ~~~~~~~~~~~l~~~L-~~kr~LlVlDdV 157 (157)
...+.+++...+.... ..+.-+||+|.+
T Consensus 442 ~~~~~e~~l~~l~~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 442 QPDTGEQALEICDALARSGAVDVIVVDSV 470 (1706)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEECCH
Confidence 2345677777776655 345569999975
No 146
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.19 E-value=0.00023 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+...|.|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998877
No 147
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.19 E-value=0.00016 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.|.|+|++|+||||+++.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.19 E-value=0.00025 Score=49.87 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998876
No 149
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.18 E-value=0.00024 Score=49.55 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 150
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.18 E-value=0.0003 Score=49.75 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 151
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.18 E-value=0.0002 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|+|.|++|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 688999999999999999877
No 152
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00023 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 153
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.18 E-value=0.00018 Score=56.43 Aligned_cols=42 Identities=10% Similarity=-0.162 Sum_probs=29.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCccccc-ccC-eeEEEEcCCCC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFD-CHAWVQEPYTC 107 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~~~~~ 107 (157)
+...++|+|.+|+|||||++.+.+ .+.. +=+ .++++.+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCH
T ss_pred CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCCh
Confidence 345899999999999999998877 3322 112 23456677654
No 154
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.17 E-value=0.00028 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999887
No 155
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.17 E-value=0.00025 Score=49.90 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|++|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.16 E-value=0.00025 Score=50.52 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|++|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999977
No 157
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.15 E-value=0.00019 Score=50.90 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++.|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 158
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.15 E-value=0.00034 Score=54.17 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHHhc--CCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 45 VGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++.+.-++++.+.+.. ..+....+.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4445556666666632 223456789999999999999998877
No 159
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.15 E-value=0.00023 Score=48.69 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 160
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.14 E-value=0.00031 Score=48.48 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|.+|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.14 E-value=0.0003 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|.|.|++|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 162
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.13 E-value=0.0024 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988876
No 163
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.13 E-value=0.0006 Score=51.14 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457888999999999999999876
No 164
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.13 E-value=0.00028 Score=52.02 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 165
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.13 E-value=0.00031 Score=48.95 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 166
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.12 E-value=0.00034 Score=49.54 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998877
No 167
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.12 E-value=0.00018 Score=50.77 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 168
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.12 E-value=0.00079 Score=47.52 Aligned_cols=23 Identities=4% Similarity=-0.083 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 169
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.12 E-value=0.0056 Score=49.43 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999998876
No 170
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.12 E-value=0.00027 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.|+|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999865
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.11 E-value=0.00031 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.+.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 172
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.11 E-value=0.0007 Score=51.75 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHhcC--CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 46 GLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
|-...+..+...+... .....+++|.|.+|+|||||++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3334444444444433 24566999999999999999998866
No 173
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.11 E-value=0.00078 Score=46.90 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 174
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.10 E-value=0.00074 Score=52.09 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++...+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445678999999999999999988865
No 175
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.10 E-value=0.00019 Score=49.73 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998876
No 176
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.10 E-value=0.00035 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|.+.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 177
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.10 E-value=0.00098 Score=54.96 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=36.6
Q ss_pred CCccccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 56899999998888777665 3789999999999999999988
No 178
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.09 E-value=0.00029 Score=49.24 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|+|.|++|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998877
No 179
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.09 E-value=0.00075 Score=48.10 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+.+..++... ....|.|+|.+|+|||||+..+..
T Consensus 25 ~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 25 LADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 344455544332 467899999999999999988876
No 180
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.09 E-value=0.0003 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998876
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.09 E-value=0.00035 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999866
No 182
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00028 Score=50.44 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 183
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.08 E-value=0.00034 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 184
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.08 E-value=0.00052 Score=48.78 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 46 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 46 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++..+.+...+... +.+.+.|+|.+|+|||||+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3445556665555432 467999999999999999988876
No 185
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.07 E-value=0.00033 Score=55.87 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=52.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccC----eeEEEEcCCCC-CHHHHHHHHHHHhCCCCC--C-cccccccHHH-
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFD----CHAWVQEPYTC-YADQILDIIIKFLMPSSR--L-SEIKDKNYEM- 136 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~--~-~~~~~~~~~~- 136 (157)
..++|.|..|+|||+|+..+.+.. ..+.+ .++++.++... ...+++..+...=..... . ...+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~--~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA--TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC--BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH--HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 457888999999999999888843 32223 56677777654 456777776543100000 0 0011111121
Q ss_pred ----HHHHHHHHhc---CCcEEEEeeCC
Q 045087 137 ----KKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 137 ----~~~~l~~~L~---~kr~LlVlDdV 157 (157)
..-.+.++++ ++.+||++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2233455553 78999999984
No 186
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.07 E-value=0.0013 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999887
No 187
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.07 E-value=0.00019 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=16.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 188
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.06 E-value=0.0034 Score=47.81 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988866
No 189
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.06 E-value=0.0003 Score=48.46 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 190
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.05 E-value=0.00013 Score=62.19 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCCCccccHHHHHHHHHHHhcC-----------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 40 KSRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 40 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.+...+.|.+.+... -.....+.++|.+|+|||+||+.++.
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 3457889988888888776421 12345688999999999999999988
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.05 E-value=0.0049 Score=49.88 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|.|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988874
No 192
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.05 E-value=0.0012 Score=46.84 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=46.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc--cccccHHHHHHHHHHH
Q 045087 67 AVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE--IKDKNYEMKKIILHEY 144 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~ 144 (157)
.|+|-|.-|+||||.++.+++ .+++.....++...+......+.+..++..-... +... .-..+..+....+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~-~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVT-PKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999988 5554433445555554444445555554332111 0000 0112223445566667
Q ss_pred hcCCcEEEEee
Q 045087 145 LMTKRYLIVID 155 (157)
Q Consensus 145 L~~kr~LlVlD 155 (157)
|.... .+|.|
T Consensus 79 L~~g~-~Vi~D 88 (197)
T 3hjn_A 79 LSEGY-AVLLD 88 (197)
T ss_dssp HTTTC-EEEEE
T ss_pred HHCCC-eEEec
Confidence 76554 35555
No 193
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.05 E-value=0.0028 Score=47.70 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++++|.+|+||||++..++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 194
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.05 E-value=0.0069 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988875
No 195
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.04 E-value=0.00026 Score=48.43 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 196
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.04 E-value=0.00037 Score=49.20 Aligned_cols=23 Identities=4% Similarity=-0.223 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 197
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.03 E-value=0.0004 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 198
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.03 E-value=0.00029 Score=49.22 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.02 E-value=0.00036 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999977
No 200
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.01 E-value=0.00041 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHh
Q 045087 65 LSAVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~ 86 (157)
..+++|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 201
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.01 E-value=0.00039 Score=47.34 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998877
No 202
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.00 E-value=0.0004 Score=49.65 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998876
No 203
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.0007 Score=49.63 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=21.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....++.++|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 204
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.98 E-value=0.00046 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|+|..|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 205
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.98 E-value=0.00053 Score=48.52 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998877
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.97 E-value=0.00051 Score=47.42 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|.|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999998876
No 207
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.97 E-value=0.00044 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998876
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.96 E-value=0.00071 Score=48.56 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 50 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 50 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-+..|..++.. -++...+.++|++|+||||+|.++++
T Consensus 44 f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 44 FLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 35666666654 23345789999999999999988877
No 209
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.96 E-value=0.00037 Score=49.30 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|+|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998865
No 210
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.94 E-value=0.00049 Score=48.28 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 211
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.93 E-value=0.0006 Score=49.24 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+.++|.|.|++|+||||.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998877
No 212
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.92 E-value=0.00053 Score=48.81 Aligned_cols=24 Identities=8% Similarity=0.245 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++++|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999876
No 213
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.92 E-value=0.00063 Score=51.71 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+++|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999998877
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.92 E-value=0.00026 Score=50.13 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998866
No 215
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.91 E-value=0.00054 Score=47.61 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++.|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999887
No 216
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.91 E-value=0.0006 Score=48.38 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998864
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.90 E-value=0.00065 Score=48.28 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|.|++|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998876
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.90 E-value=0.00053 Score=48.69 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 219
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.89 E-value=0.00049 Score=49.23 Aligned_cols=23 Identities=13% Similarity=-0.093 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.89 E-value=0.0015 Score=55.10 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=36.2
Q ss_pred CCccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 42 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46889999998887776421 12234789999999999999999987
No 221
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.89 E-value=0.0029 Score=45.39 Aligned_cols=23 Identities=17% Similarity=-0.058 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.+.|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999999987
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.89 E-value=0.00063 Score=49.91 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998873
No 223
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.89 E-value=0.00071 Score=50.53 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 224
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.89 E-value=0.00073 Score=49.24 Aligned_cols=24 Identities=4% Similarity=0.043 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999998866
No 225
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.89 E-value=0.0018 Score=48.96 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+++|+|..|.|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998877
No 226
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.87 E-value=0.00059 Score=48.52 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 227
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=96.85 E-value=0.0017 Score=52.48 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=50.8
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHHH-
Q 045087 65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEMK- 137 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~- 137 (157)
...++|.|.+|+|||+|| ..+.+. . .-+ .++++.+++.. ...++++.+...=...... ...+.......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 346889999999999996 577773 2 234 35677777765 3556777665421110000 00111111211
Q ss_pred ----HHHHHHHh--cCCcEEEEeeCC
Q 045087 138 ----KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 138 ----~~~l~~~L--~~kr~LlVlDdV 157 (157)
...+.+++ +++.+||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 22334444 578999999984
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.85 E-value=0.00055 Score=49.17 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998876
No 229
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.84 E-value=0.00057 Score=48.83 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999998876
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.84 E-value=0.00079 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.81 E-value=0.00078 Score=48.60 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999877
No 232
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.80 E-value=0.00085 Score=51.05 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=20.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.++|+|+|-|||||||.+.-+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 578999999999999998865544
No 233
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=96.78 E-value=0.0018 Score=52.29 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=49.5
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCCC-HHHHHHHHHHHhCC--------CCCCcccc---
Q 045087 65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMP--------SSRLSEIK--- 130 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~l~~i~~~l~~--------~~~~~~~~--- 130 (157)
...++|.|.+|+|||+|| ..+.+. .. -+ .++++.+++..+ ..+++..+...=.. ..+.+...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 456889999999999996 577773 22 34 356777777543 45565555432100 01100000
Q ss_pred -cccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 131 -DKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 131 -~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
...--.+.+.++. +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 0111223334443 589999999984
No 234
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.002 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....|.|.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 235
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.77 E-value=0.0035 Score=46.73 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|+|||||+..++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 456999999999999999998877
No 236
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.76 E-value=0.0022 Score=54.91 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=35.8
Q ss_pred CccccHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 43 DTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 43 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|.+..++.+...+... ......+.++|.+|+|||++|+.+++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999988888777531 11235789999999999999999987
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.76 E-value=0.00081 Score=47.21 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998876
No 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.75 E-value=0.0017 Score=47.27 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999976
No 239
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.75 E-value=0.001 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|+||||++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999998875
No 240
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.74 E-value=0.0053 Score=56.11 Aligned_cols=88 Identities=15% Similarity=-0.002 Sum_probs=61.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHhCCCCCCcc-cccccHHHHHHHH
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLSE-IKDKNYEMKKIIL 141 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~~~~-~~~~~~~~~~~~l 141 (157)
++-++|-|+|+.|+||||||.++.. +.++.=..++|+.....+++.- +..++.+.+.-. ....+.++-++.+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 4568999999999999999998887 5566667788998887777553 566665432100 1223346667777
Q ss_pred HHHhc-CCcEEEEeeCC
Q 045087 142 HEYLM-TKRYLIVIDDV 157 (157)
Q Consensus 142 ~~~L~-~kr~LlVlDdV 157 (157)
...++ +..-++|+|.|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 77664 45568999975
No 241
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.74 E-value=0.0009 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHh
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~ 86 (157)
...+++|+|.+|+|||||++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34699999999999999999887
No 242
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.73 E-value=0.0019 Score=48.06 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.-+..||....++...+.++|++|.|||.+|.++.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 335555554424456799999999999999999886
No 243
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.73 E-value=0.001 Score=53.18 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=52.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccc--cCeeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHH---
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHY--FDCHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYE--- 135 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~--- 135 (157)
-..++|.|.+|+|||+|+..+.++....+. =+.++++.++... ...+++..+...=...... ...+.....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 345778899999999999988874333211 1356677777654 4567777776431110000 001111111
Q ss_pred --HHHHHHHHHhc---CCcEEEEeeCC
Q 045087 136 --MKKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 136 --~~~~~l~~~L~---~kr~LlVlDdV 157 (157)
...-.+.++++ ++.+||++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 22233444554 78999999984
No 244
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.71 E-value=0.00062 Score=50.18 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..|+|+|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.70 E-value=0.00097 Score=47.43 Aligned_cols=21 Identities=14% Similarity=0.011 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.69 E-value=0.0019 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 247
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=96.69 E-value=0.00093 Score=53.31 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=52.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccc--------cccC-eeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---ccccc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMK--------HYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKD 131 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~ 131 (157)
-..++|.|..|+|||+|+..+.+..... ++=+ .++++.++... ...+++..+...=...... ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3457888999999999999888743331 1112 56677777654 4566666654421000000 00122
Q ss_pred ccHHH-----HHHHHHHHhc---CCcEEEEeeCC
Q 045087 132 KNYEM-----KKIILHEYLM---TKRYLIVIDDV 157 (157)
Q Consensus 132 ~~~~~-----~~~~l~~~L~---~kr~LlVlDdV 157 (157)
..... ..-.+.++++ ++.+||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 22222 2233455553 78999999984
No 248
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.69 E-value=0.0024 Score=49.85 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=22.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+++|+|++|.|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999876
No 249
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.69 E-value=0.0011 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.69 E-value=0.0014 Score=44.85 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++++|..|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999998876
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.68 E-value=0.00065 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHh
Q 045087 65 LSAVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~ 86 (157)
..+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 252
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.68 E-value=0.0056 Score=43.93 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=32.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCccccc-ccCeeEEEEcCCCCCHHHHHHHHHH
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDCHAWVQEPYTCYADQILDIIIK 118 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~l~~i~~ 118 (157)
..|.+.|..|+||||+++.+.+ .+.. .+....+..-+......+.+..++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999988 4433 2323344444333333445555543
No 253
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.67 E-value=0.006 Score=49.39 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
|...|..+-....+++|+|.+|+|||||+..++.
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4333433223456999999999999999999876
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.67 E-value=0.001 Score=49.65 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 255
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.67 E-value=0.001 Score=47.82 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 256
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.66 E-value=0.0048 Score=48.49 Aligned_cols=50 Identities=16% Similarity=0.001 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCccccc-ccCe-eEEEEcCCC
Q 045087 54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDC-HAWVQEPYT 106 (157)
Q Consensus 54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~~~~~ 106 (157)
.++.+..- .+...++|+|.+|+|||+|+..+.+ .+.. +=++ ++++.+++.
T Consensus 165 aID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 165 LIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIAN--GIAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCC
T ss_pred hhhhcccc-cCCceEEEecCCCCChhHHHHHHHH--HHhhcCCCeEEEEEEeccC
Confidence 34445432 2345789999999999999998887 3322 1122 345666654
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.66 E-value=0.0021 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 258
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.66 E-value=0.0021 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 259
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.66 E-value=0.00068 Score=47.10 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++|+|.+|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998877
No 260
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=96.65 E-value=0.0041 Score=50.14 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=50.7
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccHHHH-
Q 045087 65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNYEMK- 137 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~- 137 (157)
...++|.|..|+|||+|| ..+.+. .+-+ .++++.+++..+ ..+++..+...=...... ...+.......
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 346889999999999996 566662 2233 357888887654 566777765431111100 00111111111
Q ss_pred ----HHHHHHHh--cCCcEEEEeeCC
Q 045087 138 ----KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 138 ----~~~l~~~L--~~kr~LlVlDdV 157 (157)
...+.+++ +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 11233333 589999999984
No 261
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=96.64 E-value=0.004 Score=50.85 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=35.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC-HHHHHHHH
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY-ADQILDII 116 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~l~~i 116 (157)
...++|.|..|+|||+|+..+.+. .+-+.++++.+++..+ ..+++..+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 457899999999999999988762 2235678888887665 55666654
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.62 E-value=0.002 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999976
No 263
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.62 E-value=0.0056 Score=44.64 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=27.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCccccc-ccCeeEEEEcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKH-YFDCHAWVQEP 104 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~ 104 (157)
...|.|.|+.|+||||+++.+.+ .... .+.......-+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNGIDHITRTREP 65 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH--HHHHTTCCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCeeeeecCC
Confidence 46899999999999999999988 4433 34434444433
No 264
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.60 E-value=0.0012 Score=45.90 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++.|+|.+|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 265
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.59 E-value=0.0024 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999976
No 266
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.59 E-value=0.0027 Score=46.34 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999999966
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.59 E-value=0.0015 Score=49.33 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|+||||++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999998866
No 268
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.59 E-value=0.0032 Score=50.73 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=51.2
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHhcCcccccccC-eeEEEEcCCCC-CHHHHHHHHHHHhCCCCCC---cccccccHHHH-
Q 045087 65 LSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSSRL---SEIKDKNYEMK- 137 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~l~~i~~~l~~~~~~---~~~~~~~~~~~- 137 (157)
...++|.|.+|+|||+|| ..+.+. . .-+ .++++.+++.. ...+++..+...=...... ...+.......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 456889999999999996 577773 2 234 34677777755 3556777766532111100 00112122221
Q ss_pred ----HHHHHHHh--cCCcEEEEeeCC
Q 045087 138 ----KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 138 ----~~~l~~~L--~~kr~LlVlDdV 157 (157)
.-.+.+++ +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 12334444 578999999984
No 269
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.55 E-value=0.0025 Score=46.73 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.55 E-value=0.0016 Score=47.40 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 271
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.55 E-value=0.0012 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+++|+|..|+|||||++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998876
No 272
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.54 E-value=0.0028 Score=47.13 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||.+.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 273
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.54 E-value=0.0017 Score=49.88 Aligned_cols=25 Identities=8% Similarity=0.236 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+.++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 274
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.54 E-value=0.0026 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 275
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.53 E-value=0.0028 Score=46.94 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||.+.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999976
No 276
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.53 E-value=0.0014 Score=47.79 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 277
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.52 E-value=0.0019 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888899999999999998874
No 278
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.51 E-value=0.0015 Score=50.23 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|+|.|++|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998877
No 279
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.50 E-value=0.003 Score=43.44 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=22.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.....|.|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999874
No 280
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.00094 Score=55.06 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=34.0
Q ss_pred CCccccHHHHHHHHHHHhcCCCC---------ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 42 RDTVGLDDRMEELLDLLIEGPPQ---------LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 42 ~~~vGr~~~~~~l~~~L~~~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+.++|.+.....+...|..+..+ ...+.++|.+|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 57899988776665544443200 115889999999999999999873
No 281
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.49 E-value=0.0016 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998873
No 282
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.49 E-value=0.0056 Score=43.59 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=30.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
+.|+|-|.-|+||||+++.+.+ .+.+.+.+ ++..-+......+.+..++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v-~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDV-IMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSCE-EEEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCCE-EEeeCCCCChHHHHHHHHH
Confidence 4788999999999999999988 44444432 2333333333334444443
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.48 E-value=0.0033 Score=46.41 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 284
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.46 E-value=0.0017 Score=46.39 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+|.|.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999998876
No 285
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.46 E-value=0.0023 Score=43.28 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..++|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 286
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.46 E-value=0.0017 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|.|+|+.|+||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998877
No 287
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.45 E-value=0.0035 Score=46.45 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999876
No 288
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.45 E-value=0.0017 Score=46.77 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999998877
No 289
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.44 E-value=0.00073 Score=50.80 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=18.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 290
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.43 E-value=0.0019 Score=47.63 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999865
No 291
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.43 E-value=0.0026 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 292
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.42 E-value=0.0037 Score=50.48 Aligned_cols=93 Identities=15% Similarity=0.077 Sum_probs=51.4
Q ss_pred ceEEEEEeCCCCcHHHHH-HHHhcCccc----ccccC-eeEEEEcCCCCC-HHHHHHHHHHHhCCCCCC---cccccccH
Q 045087 65 LSAVTILDSIGLDKTAFA-AEAYSSNYM----KHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMPSSRL---SEIKDKNY 134 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~l~~i~~~l~~~~~~---~~~~~~~~ 134 (157)
...++|.|.+|+|||+|| ..+.+.... .++-+ .++++.+++..+ ..++++.+...=...... ...+....
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 446889999999999995 566663221 01234 467788887653 556666665421110000 00111111
Q ss_pred HHH-----HHHHHHHh--cCCcEEEEeeCC
Q 045087 135 EMK-----KIILHEYL--MTKRYLIVIDDV 157 (157)
Q Consensus 135 ~~~-----~~~l~~~L--~~kr~LlVlDdV 157 (157)
... .-.+.+++ +++.+||++||+
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 211 22233444 578999999984
No 293
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.42 E-value=0.0039 Score=47.76 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 54 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 54 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+.+-+...-....+++|+|.+|+|||||...+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3333433334568999999999999999998863
No 294
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.41 E-value=0.0022 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...++|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 295
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.41 E-value=0.0034 Score=44.59 Aligned_cols=90 Identities=11% Similarity=-0.045 Sum_probs=45.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCC---CCCHHHHHHHHHHHhCC-CCCCcccc-------ccc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPY---TCYADQILDIIIKFLMP-SSRLSEIK-------DKN 133 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~l~~i~~~l~~-~~~~~~~~-------~~~ 133 (157)
...|-|++..|.||||+|-.+.- +.-.+=..+.++.+.. ......++..+.-.+.. ..... +. ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~-~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFT-WETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCC-CCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccc-cCCCCcHHHHHH
Confidence 34666777788999999966655 2222222344444332 23444555554100000 00000 01 112
Q ss_pred HHHHHHHHHHHhcCCcE-EEEeeCC
Q 045087 134 YEMKKIILHEYLMTKRY-LIVIDDV 157 (157)
Q Consensus 134 ~~~~~~~l~~~L~~kr~-LlVlDdV 157 (157)
.......+++.+...+| |||||++
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi 129 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDEL 129 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 23445556666766665 9999974
No 296
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.40 E-value=0.0038 Score=46.75 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=21.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999987766
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.40 E-value=0.0022 Score=47.36 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 298
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.40 E-value=0.0021 Score=46.45 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998875
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.40 E-value=0.002 Score=47.27 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 300
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0024 Score=49.54 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|+||||++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999998876
No 301
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.39 E-value=0.0021 Score=46.60 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.39 E-value=0.0023 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999887
No 303
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.39 E-value=0.0035 Score=46.07 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999876
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.38 E-value=0.0026 Score=47.04 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|+.|.|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 356999999999999999998866
No 305
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.36 E-value=0.0024 Score=47.36 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...+++|+|..|.|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999873
No 306
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.36 E-value=0.0023 Score=48.80 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46889999999999999999876
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.36 E-value=0.0021 Score=47.58 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45999999999999999988875
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.36 E-value=0.0023 Score=48.56 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999998876
No 309
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.36 E-value=0.0015 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++|+|..|.|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998875
No 310
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.36 E-value=0.0065 Score=44.61 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
+.++.+.+.....+...|+++|.+|+|||||...+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444443456788999999999999999987643
No 311
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.34 E-value=0.0029 Score=43.41 Aligned_cols=24 Identities=4% Similarity=0.102 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 312
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.34 E-value=0.0026 Score=42.34 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+-|.++|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988764
No 313
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.34 E-value=0.0061 Score=46.67 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=22.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+..+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999988864
No 314
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.003 Score=45.41 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=33.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
....++.|.|.+|+|||++|..++.+ .....-..++|++... +..++...+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~~~~~ 79 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLRREMA 79 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHHHHHH
Confidence 34568999999999999999876542 1222234566666543 4555555543
No 315
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.32 E-value=0.0022 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...++|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998764
No 316
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.31 E-value=0.0027 Score=50.08 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999977
No 317
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.31 E-value=0.0071 Score=44.53 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+.++.+.+.........|.++|.+|+|||||...++..
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33444444444344567889999999999999998764
No 318
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.30 E-value=0.0024 Score=47.69 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999976
No 319
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.30 E-value=0.0059 Score=44.17 Aligned_cols=24 Identities=17% Similarity=-0.079 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+...|.+.|+.|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 320
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.29 E-value=0.0018 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+...|+|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998877
No 321
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0056 Score=42.19 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999988764
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.28 E-value=0.0024 Score=42.43 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 323
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.26 E-value=0.0037 Score=50.64 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+.+-.+.|.+..........+|.+.|++|+||||+|+.+..
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 3344444445443322223457889999999999999999988
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.25 E-value=0.0026 Score=46.79 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999977
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.25 E-value=0.0027 Score=42.83 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356889999999999999998764
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.25 E-value=0.0045 Score=41.89 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+...|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 327
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.24 E-value=0.0043 Score=44.98 Aligned_cols=24 Identities=17% Similarity=-0.040 Sum_probs=18.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+...|.|.|+.|+||||+++.+.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999988
No 328
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.22 E-value=0.0049 Score=46.43 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 86 (157)
+++|.+.+.. .+++++|.+|+|||||.+.+.
T Consensus 156 i~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 5566655532 488999999999999999987
No 329
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.21 E-value=0.003 Score=46.95 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998875
No 330
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.20 E-value=0.0026 Score=48.29 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+.+++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999863
No 331
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.20 E-value=0.003 Score=42.27 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|.++|.+|+|||||...+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999998653
No 332
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.17 E-value=0.0093 Score=47.40 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 49 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 49 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+..+...+..+. +.+.|.|.+|+|||+++..+..
T Consensus 32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 33444444444432 3889999999999999988877
No 333
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.17 E-value=0.0027 Score=48.14 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 356899999999999999999876
No 334
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.17 E-value=0.006 Score=47.25 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999866
No 335
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.17 E-value=0.0033 Score=42.24 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 336
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.17 E-value=0.0031 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 337
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.15 E-value=0.017 Score=54.97 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=35.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHHHHh
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIIIKFL 120 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~~~l 120 (157)
+.+.++|++|+|||++|+.+... . ..+ ....++++...+...+...+-..+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHB
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHh
Confidence 47889999999999999776662 2 122 345567777777776666555443
No 338
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.0032 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 356899999999999999999876
No 339
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.15 E-value=0.0035 Score=42.85 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 340
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0034 Score=42.12 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
--|.++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 341
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.14 E-value=0.0039 Score=41.66 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 342
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.13 E-value=0.003 Score=43.47 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.-|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 343
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.12 E-value=0.0034 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|.|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999976
No 344
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.12 E-value=0.0047 Score=50.11 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.++|++|.||||+|+.+.+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 345
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.11 E-value=0.0044 Score=42.75 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999774
No 346
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.10 E-value=0.0034 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+.|+|.+|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999876
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.10 E-value=0.0033 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.-|.++|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988764
No 348
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.10 E-value=0.0041 Score=46.72 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||.+.++.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999987
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.10 E-value=0.004 Score=42.82 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHh
Q 045087 66 SAVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~ 86 (157)
.+.+|+|..|.|||||+.+++
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 388999999999999998884
No 350
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.10 E-value=0.0026 Score=44.56 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....++|+|.+|+|||||...+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988764
No 351
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.09 E-value=0.0046 Score=42.45 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998775
No 352
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.09 E-value=0.0055 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 346899999999999999999987
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.09 E-value=0.004 Score=43.93 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|.++|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988774
No 354
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.08 E-value=0.0045 Score=47.66 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999998875
No 355
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.07 E-value=0.022 Score=39.63 Aligned_cols=41 Identities=15% Similarity=-0.023 Sum_probs=26.5
Q ss_pred eEEEEE-eCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCC
Q 045087 66 SAVTIL-DSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCY 108 (157)
Q Consensus 66 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 108 (157)
++|+|+ +-||+||||+|..+.. .....-...+.+......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCC
Confidence 578888 7789999999988876 3333222345555544333
No 356
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.05 E-value=0.0036 Score=41.85 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
--|.++|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 357
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.05 E-value=0.028 Score=40.40 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHh-cCccccccc-CeeEEEEcCCCCCHHHHHHHHHHHhCCCCC----
Q 045087 52 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY-SSNYMKHYF-DCHAWVQEPYTCYADQILDIIIKFLMPSSR---- 125 (157)
Q Consensus 52 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~-~~~~~~~~F-~~~~wv~~~~~~~~~~~l~~i~~~l~~~~~---- 125 (157)
+++...+..+ ..+.+.|..|.||||+..... +........ .+.+.+..+......++.+.+...++....
T Consensus 67 ~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g 142 (235)
T 3llm_A 67 SEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCG 142 (235)
T ss_dssp HHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEE
T ss_pred HHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEE
Confidence 3444444443 478999999999998665443 211111112 234444444433444555555544432210
Q ss_pred ------------CcccccccHHHHHHHHHHHhcCCcEEEEeeCC
Q 045087 126 ------------LSEIKDKNYEMKKIILHEYLMTKRYLIVIDDV 157 (157)
Q Consensus 126 ------------~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdV 157 (157)
...+-..+...+...+...|.+- -+||+|++
T Consensus 143 ~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEa 185 (235)
T 3llm_A 143 YSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEI 185 (235)
T ss_dssp EEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCT
T ss_pred EeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECC
Confidence 01122345677777777655444 46788864
No 358
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.04 E-value=0.0036 Score=41.69 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
--|.++|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999888754
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.04 E-value=0.0037 Score=42.93 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.03 E-value=0.0036 Score=41.99 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999988764
No 361
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.02 E-value=0.0042 Score=42.54 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998775
No 362
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.01 E-value=0.0071 Score=45.49 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
++++..++.. .+++++|.+|+|||||.+.+...
T Consensus 160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence 4555555532 48899999999999999999763
No 363
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.01 E-value=0.0038 Score=41.74 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999888754
No 364
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.005 Score=41.65 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999764
No 365
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.98 E-value=0.004 Score=41.74 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
--|.++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999988764
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.98 E-value=0.0043 Score=47.86 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 367
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.98 E-value=0.008 Score=46.61 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999876
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.97 E-value=0.0041 Score=41.53 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=18.1
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|.++|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999988864
No 369
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.97 E-value=0.0081 Score=46.75 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|+|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999865
No 370
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.96 E-value=0.0064 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|+|||||.+.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999976
No 371
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.96 E-value=0.011 Score=49.07 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHH-HHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087 48 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFA-AEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 48 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
+.+.+.+...|... .+..|.|+||.|||+.+ ..+++ -++. ...+.++.......++++..+.
T Consensus 192 ~~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHHHHH
Confidence 56667777666543 37789999999999554 54444 2322 2356666665555666666654
No 372
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.96 E-value=0.004 Score=42.19 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999888664
No 373
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.96 E-value=0.0046 Score=41.87 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 374
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.96 E-value=0.0034 Score=44.55 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 375
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.95 E-value=0.0044 Score=41.52 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999988754
No 376
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.95 E-value=0.0045 Score=48.75 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|.|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999998876
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.95 E-value=0.0042 Score=41.54 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
--|.++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999988753
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.95 E-value=0.0075 Score=46.92 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 45899999999999999999875
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.94 E-value=0.0042 Score=42.02 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988754
No 380
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.93 E-value=0.0054 Score=42.85 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|+++|.+|+|||||...+...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998763
No 381
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.92 E-value=0.006 Score=41.25 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 382
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.92 E-value=0.0043 Score=42.86 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=20.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..--|.|+|.+|+|||||...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999877654
No 383
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.92 E-value=0.0052 Score=47.73 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||.+.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346999999999999999999866
No 384
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.91 E-value=0.006 Score=42.12 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
....|.|+|.+|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999987753
No 385
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.91 E-value=0.011 Score=42.95 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-.|.+.|.||+||||+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3477889999999999988877
No 386
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.90 E-value=0.0048 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|+|||||.+.++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999865
No 387
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.90 E-value=0.0041 Score=43.42 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHh
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAY 86 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~ 86 (157)
...-|.|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999985
No 388
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.90 E-value=0.0045 Score=42.56 Aligned_cols=23 Identities=17% Similarity=-0.109 Sum_probs=19.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.--|.|+|.+|+|||||.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999987764
No 389
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.90 E-value=0.0066 Score=48.46 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|.++|++|+||||+++.+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999877
No 390
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.89 E-value=0.0046 Score=41.79 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999998764
No 391
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.89 E-value=0.0055 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999976
No 392
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.89 E-value=0.0052 Score=43.54 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.86 E-value=0.0063 Score=41.40 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|.|+|.+|+|||||...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999988753
No 394
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.86 E-value=0.0052 Score=46.25 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=22.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999998764
No 395
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.86 E-value=0.0049 Score=42.72 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|+++|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347889999999999999988763
No 396
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.86 E-value=0.0047 Score=42.67 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456889999999999999888764
No 397
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.85 E-value=0.0048 Score=42.15 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
--|.|+|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.85 E-value=0.0068 Score=40.63 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|.++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998653
No 399
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.85 E-value=0.0048 Score=42.21 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988763
No 400
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.84 E-value=0.0071 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|.|.|++|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 401
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.83 E-value=0.0059 Score=47.68 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45899999999999999999976
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.83 E-value=0.0054 Score=41.81 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..--|.|+|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999998764
No 403
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.82 E-value=0.01 Score=43.33 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788889999999999987766
No 404
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.82 E-value=0.0053 Score=41.93 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999988754
No 405
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.81 E-value=0.006 Score=42.40 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.++|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999999877663
No 406
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.81 E-value=0.0052 Score=41.86 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.++|.+|+|||||...+...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999888754
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.81 E-value=0.006 Score=41.20 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.-|.|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988753
No 408
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.79 E-value=0.0064 Score=42.47 Aligned_cols=22 Identities=14% Similarity=-0.064 Sum_probs=18.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++.++|..|+||||++..+++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999965554
No 409
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.79 E-value=0.0062 Score=47.30 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|.|||||++.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999988865
No 410
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.79 E-value=0.0051 Score=42.43 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457889999999999999988764
No 411
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.79 E-value=0.0071 Score=44.86 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 36788899999999999988766
No 412
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.78 E-value=0.0051 Score=44.74 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999998876
No 413
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.78 E-value=0.0079 Score=42.89 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+...|.|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999775
No 414
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.78 E-value=0.006 Score=42.44 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 415
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.77 E-value=0.006 Score=41.51 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998764
No 416
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.77 E-value=0.0039 Score=42.37 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.++|.+|+|||||...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999988764
No 417
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.77 E-value=0.0059 Score=42.48 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999988863
No 418
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.77 E-value=0.0065 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|..|+|||||.+.++.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999865
No 419
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.76 E-value=0.0051 Score=46.35 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 045087 67 AVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~ 87 (157)
-|+|+|.+|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999765
No 420
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.75 E-value=0.0055 Score=42.18 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998775
No 421
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.75 E-value=0.0066 Score=41.33 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=21.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+...|.|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998753
No 422
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.75 E-value=0.0061 Score=41.34 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999988764
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.75 E-value=0.0057 Score=41.47 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.++|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 424
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.74 E-value=0.0057 Score=41.53 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999988764
No 425
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.73 E-value=0.0059 Score=42.56 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+..-|.|+|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 426
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.73 E-value=0.015 Score=44.81 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++.+.|-||+||||+|..+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 457888899999999999977754
No 427
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0057 Score=42.40 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 428
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.72 E-value=0.0057 Score=42.56 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3557889999999999999988764
No 429
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.70 E-value=0.0076 Score=42.22 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.++|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999888754
No 430
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.70 E-value=0.0067 Score=42.11 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998754
No 431
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.70 E-value=0.0065 Score=42.18 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999988754
No 432
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0063 Score=42.02 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456889999999999999988763
No 433
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.70 E-value=0.0068 Score=42.09 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988764
No 434
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.69 E-value=0.0057 Score=47.27 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|+|..|.|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999976
No 435
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.69 E-value=0.0084 Score=41.25 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 436
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.68 E-value=0.013 Score=40.21 Aligned_cols=25 Identities=16% Similarity=-0.013 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+..-|.|+|.+|+|||||...+...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999998653
No 437
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.68 E-value=0.0064 Score=42.85 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988764
No 438
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.68 E-value=0.0092 Score=40.80 Aligned_cols=26 Identities=12% Similarity=0.035 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
+...|.++|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998653
No 439
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.68 E-value=0.021 Score=41.02 Aligned_cols=23 Identities=17% Similarity=-0.035 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.+.|+.|+||||+++.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 440
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0064 Score=42.74 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|+|+|.+|+|||||...+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999988653
No 441
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0064 Score=42.05 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 442
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.67 E-value=0.0068 Score=50.29 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
+..+|.+.|++|+||||+|+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999877
No 443
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.66 E-value=0.0078 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|+.|+|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346899999999999999999876
No 444
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.66 E-value=0.0075 Score=45.47 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.....|+|+|.+|+|||||..++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45689999999999999999988764
No 445
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.65 E-value=0.0075 Score=42.09 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..--|.|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3557889999999999999988764
No 446
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.65 E-value=0.011 Score=40.62 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+...|.|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998853
No 447
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.64 E-value=0.007 Score=41.92 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999764
No 448
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.64 E-value=0.0064 Score=42.71 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999988764
No 449
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.63 E-value=0.02 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=19.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.+++.+.|-||+||||+|..+..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 56777889999999999977754
No 450
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.63 E-value=0.0066 Score=41.85 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988754
No 451
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.63 E-value=0.0091 Score=43.99 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 452
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.63 E-value=0.0066 Score=41.96 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..--|.++|.+|+|||||...+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3457889999999999999998764
No 453
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.63 E-value=0.0083 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..+++|+|+.|.|||||.+.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999998865
No 454
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.62 E-value=0.0076 Score=42.55 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 455
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.60 E-value=0.013 Score=49.12 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....++.|...+..-......|+|+|.+|+|||||..++...
T Consensus 51 l~~~l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 51 LERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CHHHHHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344445554433221112467999999999999999999865
No 456
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.60 E-value=0.0094 Score=42.92 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999988743
No 457
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.59 E-value=0.02 Score=47.40 Aligned_cols=64 Identities=17% Similarity=0.071 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCCCHHHHHHHHH
Q 045087 47 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTCYADQILDIII 117 (157)
Q Consensus 47 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~l~~i~ 117 (157)
.+.+.+.+...+. .++..|.|++|.|||+++..+.. .+...-...+.++.........+...+.
T Consensus 182 n~~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~--~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVY--HLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CHHHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHH--HHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 3455555555442 23678999999999988766654 2222123456666555545555555554
No 458
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.59 E-value=0.0068 Score=41.74 Aligned_cols=25 Identities=24% Similarity=0.049 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
..-|.|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999987643
No 459
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.011 Score=40.79 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456889999999999999988763
No 460
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.59 E-value=0.017 Score=45.67 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 51 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 51 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...|.+++ . ....+++|+|+.|.|||||.+.+..
T Consensus 156 ~~~L~~l~-~--~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 156 HDNFRRLI-K--RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHHHHH-T--SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-H--hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 34455543 3 2456899999999999999998866
No 461
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.58 E-value=0.0073 Score=41.30 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
No 462
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.58 E-value=0.011 Score=48.31 Aligned_cols=24 Identities=17% Similarity=-0.083 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|.+.|++|+||||+|+.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 463
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.57 E-value=0.0071 Score=41.60 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999988764
No 464
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.57 E-value=0.007 Score=41.77 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446889999999999999988764
No 465
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0072 Score=41.51 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 466
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.57 E-value=0.0071 Score=41.60 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999988753
No 467
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=95.56 E-value=0.039 Score=45.25 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=34.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCcccccccCeeEEEEcCCCC-CHHHHHHH
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSNYMKHYFDCHAWVQEPYTC-YADQILDI 115 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~l~~ 115 (157)
+...++|.|..|+|||+|+..+.+. .+-+.++++.++... ...+++..
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 3457899999999999999998773 223567888887653 34455544
No 468
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.56 E-value=0.0065 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..++|+|..|.|||||++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999977
No 469
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.55 E-value=0.025 Score=43.41 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=18.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++.+.|-||+||||+|..+..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHH
Confidence 445555669999999999977755
No 470
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.54 E-value=0.014 Score=41.87 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
|+|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 66689999999999988866
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.54 E-value=0.0077 Score=42.02 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999988764
No 472
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.51 E-value=0.0092 Score=44.65 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...+.|+|+|.+|+|||||..++...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35678999999999999999998764
No 473
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.50 E-value=0.017 Score=44.61 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.2
Q ss_pred CCceEEEEE-eCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTIL-DSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~-G~gGiGKTtLa~~v~~ 87 (157)
.+.++|+|+ |-||+||||+|..+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 457899999 5999999999987766
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.50 E-value=0.0076 Score=41.92 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567899999999999999988754
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.48 E-value=0.0084 Score=41.85 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..-+.|.|.+|+||||||..+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999998876
No 476
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.48 E-value=0.019 Score=40.10 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 045087 68 VTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 68 i~I~G~gGiGKTtLa~~v~~ 87 (157)
+.|+|.+|.|||++|.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67899999999999999886
No 477
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0084 Score=41.35 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.++|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999988764
No 478
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.45 E-value=0.041 Score=39.72 Aligned_cols=38 Identities=24% Similarity=0.134 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 45 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
--++-+.+.+..++... -+.++|..|.|||.+|..+..
T Consensus 93 ~l~~~Q~~ai~~~~~~~-----~~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp CCCHHHHHHHHHHTTTS-----EEEEEESSSTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC-----CEEEEeCCCCCHHHHHHHHHH
Confidence 33556666666555332 277889999999999987766
No 479
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.45 E-value=0.0093 Score=44.91 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
+...|+|+|.+|+|||||..++...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999988764
No 480
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0088 Score=42.62 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999988864
No 481
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0085 Score=41.97 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999988764
No 482
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.44 E-value=0.0092 Score=46.21 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHhcC
Q 045087 66 SAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.+++|+|.+|+|||||...+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999874
No 483
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.43 E-value=0.0088 Score=41.92 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999888754
No 484
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.42 E-value=0.0085 Score=41.84 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999988754
No 485
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.41 E-value=0.0094 Score=41.92 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..--|.|+|.+|+|||||...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3457889999999999999998764
No 486
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.41 E-value=0.0089 Score=41.76 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
...-|.|+|.+|+|||||...+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567889999999999999988754
No 487
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.41 E-value=0.024 Score=44.76 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHHhcC---------CCCceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 45 VGLDDRMEELLDLLIEG---------PPQLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 45 vGr~~~~~~l~~~L~~~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.|.++-++.+.+.+... ......++|+|.+|+|||||...+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 46677777777666421 123468999999999999999998774
No 488
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.39 E-value=0.0072 Score=42.65 Aligned_cols=26 Identities=4% Similarity=-0.018 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcCc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSSN 89 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 89 (157)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999998754
No 489
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.37 E-value=0.0096 Score=41.51 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999988764
No 490
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.36 E-value=0.015 Score=41.39 Aligned_cols=24 Identities=8% Similarity=-0.128 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+|+|+|++|+||+|+|..+-.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999987754
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.36 E-value=0.0054 Score=41.82 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=10.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 492
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.32 E-value=0.014 Score=42.49 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=21.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999888654
No 493
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.32 E-value=0.013 Score=42.00 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.....|+++|.-|+||||+++.+..
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999997755
No 494
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.32 E-value=0.0096 Score=42.11 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
.--|.|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988764
No 495
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.31 E-value=0.011 Score=45.58 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHhc
Q 045087 65 LSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 65 ~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...++|+|..|+|||||.+.+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999988
No 496
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.0086 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhc
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
...+++|+|..|+|||||++.++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999876
No 497
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.28 E-value=0.035 Score=42.09 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=17.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHhc
Q 045087 66 SAVTILDSIGLDKTAFAAEAYS 87 (157)
Q Consensus 66 ~vi~I~G~gGiGKTtLa~~v~~ 87 (157)
.++...|-||+||||+|..+..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHH
Confidence 4555569999999999977755
No 498
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.26 E-value=0.024 Score=44.08 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=21.0
Q ss_pred CCceEEEEE-eCCCCcHHHHHHHHhc
Q 045087 63 PQLSAVTIL-DSIGLDKTAFAAEAYS 87 (157)
Q Consensus 63 ~~~~vi~I~-G~gGiGKTtLa~~v~~ 87 (157)
...++|+|+ |-||+||||+|..+..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 457888888 8899999999987766
No 499
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.25 E-value=0.032 Score=41.24 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHhcC
Q 045087 64 QLSAVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 64 ~~~vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
....|+|+|.+|+|||||..++...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999774
No 500
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.25 E-value=0.011 Score=42.35 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 045087 67 AVTILDSIGLDKTAFAAEAYSS 88 (157)
Q Consensus 67 vi~I~G~gGiGKTtLa~~v~~~ 88 (157)
-|.|+|-+|+|||+|...+..+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999887653
Done!