Query 045091
Match_columns 312
No_of_seqs 219 out of 1158
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00380 AP2 DNA-binding dom 99.8 2.4E-20 5.3E-25 139.9 8.4 63 111-173 1-63 (64)
2 cd00018 AP2 DNA-binding domain 99.8 2.8E-20 6.1E-25 137.8 7.6 61 110-170 1-61 (61)
3 PHA00280 putative NHN endonucl 99.7 3.5E-18 7.6E-23 144.6 6.8 84 79-165 36-120 (121)
4 PF00847 AP2: AP2 domain; Int 99.1 2.7E-10 5.9E-15 82.3 6.2 52 110-161 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 80.9 6.3 0.00014 27.7 5.7 38 122-159 1-42 (46)
6 PHA02601 int integrase; Provis 61.5 12 0.00026 34.9 4.4 43 114-157 2-45 (333)
7 cd00801 INT_P4 Bacteriophage P 56.2 24 0.00051 32.5 5.3 39 120-158 9-49 (357)
8 PF08846 DUF1816: Domain of un 53.2 26 0.00056 27.5 4.2 39 122-160 9-47 (68)
9 PRK09692 integrase; Provisiona 48.2 47 0.001 32.4 6.2 40 116-155 34-79 (413)
10 PF13356 DUF4102: Domain of un 47.4 61 0.0013 25.3 5.6 38 121-158 35-74 (89)
11 PF10729 CedA: Cell division a 44.1 41 0.0009 26.9 4.1 39 108-149 29-67 (80)
12 PF05036 SPOR: Sporulation rel 41.3 23 0.00049 25.6 2.2 24 132-155 42-65 (76)
13 COG0197 RplP Ribosomal protein 28.4 82 0.0018 28.2 3.9 36 123-161 96-131 (146)
14 KOG4690 Uncharacterized conser 26.6 3.3E+02 0.0072 24.6 7.3 83 107-193 66-148 (165)
15 PRK10113 cell division modulat 26.0 51 0.0011 26.3 2.0 39 108-149 29-67 (80)
16 PF03002 Somatostatin: Somatos 23.9 33 0.00071 20.7 0.4 8 266-273 11-18 (18)
17 PF08471 Ribonuc_red_2_N: Clas 22.5 90 0.002 26.0 2.9 20 139-158 71-90 (93)
No 1
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.82 E-value=2.4e-20 Score=139.87 Aligned_cols=63 Identities=70% Similarity=1.140 Sum_probs=60.3
Q ss_pred ceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 045091 111 LYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYKLRGEYARLNFPNLKDP 173 (312)
Q Consensus 111 ~YRGVr~r~~GKW~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~s~y~ 173 (312)
+||||+++++|||+|+|+++.+|+++|||+|+|+||||+|||.|++++||.++.+|||...|+
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 599998888999999999988999999999999999999999999999999999999999885
No 2
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.82 E-value=2.8e-20 Score=137.78 Aligned_cols=61 Identities=69% Similarity=1.140 Sum_probs=57.4
Q ss_pred CceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 045091 110 KLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYKLRGEYARLNFPNL 170 (312)
Q Consensus 110 S~YRGVr~r~~GKW~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~s 170 (312)
|+||||+++++|||+|+|+++..|+++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899998888899999999866699999999999999999999999999999999999974
No 3
>PHA00280 putative NHN endonuclease
Probab=99.74 E-value=3.5e-18 Score=144.59 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=77.2
Q ss_pred CCCcccccccCCcccccccCCCccccCCCCCCceeeeE-ECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 045091 79 NTTLARNYLTNIPLQNCAYTSSSTCIAPPKKKLYRGVR-QRHWGKWVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYK 157 (312)
Q Consensus 79 n~~~~~N~~~nlr~~t~~~ns~n~~~~p~~~S~YRGVr-~r~~GKW~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~k 157 (312)
++++.+|++.|||.+++.+|++|+.+.+.++|+||||. .+..|||+|+|++ +||+++||.|+++|+|+.||+ ++.+
T Consensus 36 dg~~~dnri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~ 112 (121)
T PHA00280 36 DGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRE 112 (121)
T ss_pred CCCCCCCcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHH
Confidence 67888999999999999999999988889999999995 5668999999996 999999999999999999997 7789
Q ss_pred hhCCCCCC
Q 045091 158 LRGEYARL 165 (312)
Q Consensus 158 l~G~~A~l 165 (312)
+||+||+.
T Consensus 113 lhGeFa~~ 120 (121)
T PHA00280 113 LHGQFARF 120 (121)
T ss_pred HhhccccC
Confidence 99999853
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.08 E-value=2.7e-10 Score=82.33 Aligned_cols=52 Identities=37% Similarity=0.549 Sum_probs=44.7
Q ss_pred CceeeeE-ECCCCcEEEEEecCC-C--CeEEeccCCCCHHHHHHHHHHHHHHhhCC
Q 045091 110 KLYRGVR-QRHWGKWVAEIRLPQ-N--RMRVWLGTYDSAEAAAYAYDRAAYKLRGE 161 (312)
Q Consensus 110 S~YRGVr-~r~~GKW~A~Ir~p~-~--gkri~LGtFdT~EEAArAYD~AA~kl~G~ 161 (312)
|+|+||+ .+..++|+|+|+++. + +++++||.|++++||++||+.++.+++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 6899996 455799999999842 2 49999999999999999999999999885
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=80.95 E-value=6.3 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=29.7
Q ss_pred cEEEEEe--cCCCC--eEEeccCCCCHHHHHHHHHHHHHHhh
Q 045091 122 KWVAEIR--LPQNR--MRVWLGTYDSAEAAAYAYDRAAYKLR 159 (312)
Q Consensus 122 KW~A~Ir--~p~~g--kri~LGtFdT~EEAArAYD~AA~kl~ 159 (312)
+|...|. ++..| ++++-+.|.|..||..+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5888883 44445 77888999999999999988776654
No 6
>PHA02601 int integrase; Provisional
Probab=61.52 E-value=12 Score=34.93 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred eeEECCCCcEEEEEec-CCCCeEEeccCCCCHHHHHHHHHHHHHH
Q 045091 114 GVRQRHWGKWVAEIRL-PQNRMRVWLGTYDSAEAAAYAYDRAAYK 157 (312)
Q Consensus 114 GVr~r~~GKW~A~Ir~-p~~gkri~LGtFdT~EEAArAYD~AA~k 157 (312)
+|++.+.|+|+++++. ...|+++.. +|.|..||....+.....
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~~-~f~tk~eA~~~~~~~~~~ 45 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIRK-RFATKGEALAFENYTMAE 45 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhhh-hhcCHHHHHHHHHHHHHh
Confidence 4666778999999985 234676654 599998886655554333
No 7
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=56.18 E-value=24 Score=32.47 Aligned_cols=39 Identities=33% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCcEEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHh
Q 045091 120 WGKWVAEIRLPQNRMRVWLGTYD--SAEAAAYAYDRAAYKL 158 (312)
Q Consensus 120 ~GKW~A~Ir~p~~gkri~LGtFd--T~EEAArAYD~AA~kl 158 (312)
.+.|..+++.....+++.||+|+ +.++|..........+
T Consensus 9 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 9 SKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred CEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 35699999875555678899996 6777777666654444
No 8
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=53.22 E-value=26 Score=27.54 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=29.7
Q ss_pred cEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhhC
Q 045091 122 KWVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYKLRG 160 (312)
Q Consensus 122 KW~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~kl~G 160 (312)
.|-++|.-..=....|.|-|++.+||..+.--....+..
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~ 47 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLES 47 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHh
Confidence 488999864455889999999999999987655555443
No 9
>PRK09692 integrase; Provisional
Probab=48.18 E-value=47 Score=32.39 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=25.5
Q ss_pred EECCCC--cEEEEEecCCCCeE--EeccCCC--CHHHHHHHHHHHH
Q 045091 116 RQRHWG--KWVAEIRLPQNRMR--VWLGTYD--SAEAAAYAYDRAA 155 (312)
Q Consensus 116 r~r~~G--KW~A~Ir~p~~gkr--i~LGtFd--T~EEAArAYD~AA 155 (312)
+-++.| .|..+.+.+.+|++ +.||.|+ |..+|..+...+.
T Consensus 34 ~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~~ 79 (413)
T PRK09692 34 LIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAESR 79 (413)
T ss_pred EEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHHH
Confidence 444444 49998875544444 7899999 6777766544433
No 10
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=47.36 E-value=61 Score=25.31 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=25.5
Q ss_pred CcEEEEEecCCCCeEEeccCCCC--HHHHHHHHHHHHHHh
Q 045091 121 GKWVAEIRLPQNRMRVWLGTYDS--AEAAAYAYDRAAYKL 158 (312)
Q Consensus 121 GKW~A~Ir~p~~gkri~LGtFdT--~EEAArAYD~AA~kl 158 (312)
..|.-+.+.....+++.||.|+. ..+|..........+
T Consensus 35 kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 35 KTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 34998887644447799999987 666666555544443
No 11
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=44.11 E-value=41 Score=26.92 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=25.7
Q ss_pred CCCceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHH
Q 045091 108 KKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSAEAAAY 149 (312)
Q Consensus 108 ~~S~YRGVr~r~~GKW~A~Ir~p~~gkri~LGtFdT~EEAAr 149 (312)
+--+||.||.-+ |||+|.+.. +-.-..--.|..+|.|-+
T Consensus 29 k~dgfrdvw~lr-gkyvafvl~--ge~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 29 KMDGFRDVWQLR-GKYVAFVLM--GEHFRRSPAFSVPESAQR 67 (80)
T ss_dssp -TTTECCECCCC-CEEEEEEES--SS-EEE---BSSHHHHHH
T ss_pred hcccccceeeec-cceEEEEEe--cchhccCCCcCCcHHHHH
Confidence 346799998776 999999984 333344467888887765
No 12
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=41.31 E-value=23 Score=25.64 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=19.6
Q ss_pred CCeEEeccCCCCHHHHHHHHHHHH
Q 045091 132 NRMRVWLGTYDSAEAAAYAYDRAA 155 (312)
Q Consensus 132 ~gkri~LGtFdT~EEAArAYD~AA 155 (312)
..-+|.+|.|++.++|..+.....
T Consensus 42 ~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 42 PWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TCEEEEECCECTCCHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHh
Confidence 446788899999999988877655
No 13
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=28.45 E-value=82 Score=28.17 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=30.8
Q ss_pred EEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhhCC
Q 045091 123 WVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYKLRGE 161 (312)
Q Consensus 123 W~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~kl~G~ 161 (312)
|+|+|. -|+.++-=..+.++.|..|..+|+.||=+.
T Consensus 96 waArVk---pG~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 96 WAARVK---PGRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEec---CCcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 999998 577777777888899999999999988654
No 14
>KOG4690 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.65 E-value=3.3e+02 Score=24.64 Aligned_cols=83 Identities=14% Similarity=0.029 Sum_probs=48.0
Q ss_pred CCCCceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCcchhh
Q 045091 107 PKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDCSKLNA 186 (312)
Q Consensus 107 ~~~S~YRGVr~r~~GKW~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~s~y~~eL~~~~~~sl~e 186 (312)
+.+.+|-||+--+.--=--..-..+.-.++|--+||..||=-++...|+..+-|.+- -.|..- .....|+..++++
T Consensus 66 N~~kk~~GV~VPPkPEEP~nCC~SGCv~CVWDVY~DdLEdYN~~r~~a~~~i~~~~~--~~p~d~--~~~~~~e~~~~e~ 141 (165)
T KOG4690|consen 66 NGTKKIAGVQVPPKPEEPDNCCMSGCVNCVWDVYSDDLEDYNHRRKEAAEKIAGTKE--KWPKDW--NPPLHMENVPVEL 141 (165)
T ss_pred CCceeeeeeeCCCCCCCcccchhhccceeehHhhHHHHHHHHHHHHHHHHHhcccCC--CCCccc--cchhhcccCchhh
Confidence 456789999644311000000011234789999999999999999999999988753 222211 1122345555665
Q ss_pred hhHhHHH
Q 045091 187 LKSAVDA 193 (312)
Q Consensus 187 l~aslra 193 (312)
+...|.+
T Consensus 142 ~~~~l~~ 148 (165)
T KOG4690|consen 142 REKKLET 148 (165)
T ss_pred ccHHHHH
Confidence 5444443
No 15
>PRK10113 cell division modulator; Provisional
Probab=26.00 E-value=51 Score=26.33 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=26.5
Q ss_pred CCCceeeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHH
Q 045091 108 KKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSAEAAAY 149 (312)
Q Consensus 108 ~~S~YRGVr~r~~GKW~A~Ir~p~~gkri~LGtFdT~EEAAr 149 (312)
+--+||.||.-+ |||+|.+.. +-.-..--.|..+|.|-+
T Consensus 29 kmd~frDVW~Lr-GKYVAFvl~--ge~FrRSPaFs~PEsAQR 67 (80)
T PRK10113 29 KMDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFSVPESAQR 67 (80)
T ss_pred hhcchhhhheec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 346799998776 999999884 222223356778877765
No 16
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=23.90 E-value=33 Score=20.67 Aligned_cols=8 Identities=50% Similarity=0.821 Sum_probs=6.4
Q ss_pred cccCCCCC
Q 045091 266 FWKGENSQ 273 (312)
Q Consensus 266 ~~~~~~~~ 273 (312)
|||+..+|
T Consensus 11 fWK~~tsC 18 (18)
T PF03002_consen 11 FWKTFTSC 18 (18)
T ss_pred eecccccC
Confidence 88888776
No 17
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=22.52 E-value=90 Score=26.04 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.7
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 045091 139 GTYDSAEAAAYAYDRAAYKL 158 (312)
Q Consensus 139 GtFdT~EEAArAYD~AA~kl 158 (312)
|+|+|+|+|..=||..+..|
T Consensus 71 GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 71 GYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999877654
Done!