Query 045091
Match_columns 312
No_of_seqs 219 out of 1158
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 8.3E-24 2.8E-28 158.8 6.6 60 111-170 2-62 (63)
2 1u3e_M HNH homing endonuclease 96.6 3E-05 1E-09 66.8 -6.4 88 61-152 53-146 (174)
3 3igm_B PF14_0633 protein; AP2 88.8 0.31 1.1E-05 37.9 3.3 27 108-136 4-31 (77)
4 1z1b_A Integrase; protein-DNA 68.5 6 0.0002 35.1 5.0 42 113-158 14-55 (356)
5 3jtz_A Integrase; four strande 56.7 21 0.00072 27.4 5.6 43 116-158 29-75 (88)
6 3ju0_A Phage integrase; four s 41.3 42 0.0014 26.8 5.2 43 116-158 29-75 (108)
7 2ftc_I Mitochondrial ribosomal 34.6 51 0.0017 26.9 4.8 36 123-160 80-115 (118)
8 1x60_A Sporulation-specific N- 30.4 27 0.00093 25.2 2.2 23 134-156 46-68 (79)
9 1uta_A FTSN, MSGA, cell divisi 28.7 46 0.0016 24.3 3.3 25 132-156 44-68 (81)
10 1b69_A Protein (integrase); in 27.9 52 0.0018 24.8 3.4 27 109-136 9-35 (69)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.89 E-value=8.3e-24 Score=158.82 Aligned_cols=60 Identities=65% Similarity=1.092 Sum_probs=56.9
Q ss_pred ceeeeEECCCCcEEEEEecCC-CCeEEeccCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 045091 111 LYRGVRQRHWGKWVAEIRLPQ-NRMRVWLGTYDSAEAAAYAYDRAAYKLRGEYARLNFPNL 170 (312)
Q Consensus 111 ~YRGVr~r~~GKW~A~Ir~p~-~gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFP~s 170 (312)
+||||++++||||+|+|++|. +|+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999889999999999986 489999999999999999999999999999999999974
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=96.63 E-value=3e-05 Score=66.75 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=62.3
Q ss_pred hhhhhHHHHhhhhcccC------CCCCcccccccCCcccccccCCCccccCCCCCCceeeeEECCCCcEEEEEecCCCCe
Q 045091 61 YLRQRDLLQKFSEENKT------TNTTLARNYLTNIPLQNCAYTSSSTCIAPPKKKLYRGVRQRHWGKWVAEIRLPQNRM 134 (312)
Q Consensus 61 ~lr~~~~~~~~~~~~~~------~n~~~~~N~~~nlr~~t~~~ns~n~~~~p~~~S~YRGVr~r~~GKW~A~Ir~p~~gk 134 (312)
|+.++=+...|...... -+++..+|++.||+.++...|..+....+.. ..++||...+.++|.+.|.. + +
T Consensus 53 ~~vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~ 128 (174)
T 1u3e_M 53 FQVHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-P 128 (174)
T ss_dssp EEHHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-T
T ss_pred EEeHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-C
Confidence 45566545666665432 2567779999999999999988765443322 22577733445678899986 4 5
Q ss_pred EEeccCCCCHHHHHHHHH
Q 045091 135 RVWLGTYDSAEAAAYAYD 152 (312)
Q Consensus 135 ri~LGtFdT~EEAArAYD 152 (312)
.++||.|++.+|||++|.
T Consensus 129 ~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 129 DGIEKEYPSTKCACEELG 146 (174)
T ss_dssp TSCEEEESCHHHHHHHHT
T ss_pred CceEEeeCCHHHHHHHHC
Confidence 677999999999999974
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.77 E-value=0.31 Score=37.94 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=21.4
Q ss_pred CCCceeee-EECCCCcEEEEEecCCCCeEE
Q 045091 108 KKKLYRGV-RQRHWGKWVAEIRLPQNRMRV 136 (312)
Q Consensus 108 ~~S~YRGV-r~r~~GKW~A~Ir~p~~gkri 136 (312)
.+|+|+|| +..+.+.|.|+-.+ +|++.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 57999999 56678999999887 56543
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=68.53 E-value=6 Score=35.08 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=31.2
Q ss_pred eeeEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHh
Q 045091 113 RGVRQRHWGKWVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYKL 158 (312)
Q Consensus 113 RGVr~r~~GKW~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~kl 158 (312)
.||++++.|.|..+.. .+||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 4787777899987765 4788899996 8888877766554444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=56.66 E-value=21 Score=27.39 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=30.5
Q ss_pred EECCCC--cEEEEEecCCCCeEEeccCCCC--HHHHHHHHHHHHHHh
Q 045091 116 RQRHWG--KWVAEIRLPQNRMRVWLGTYDS--AEAAAYAYDRAAYKL 158 (312)
Q Consensus 116 r~r~~G--KW~A~Ir~p~~gkri~LGtFdT--~EEAArAYD~AA~kl 158 (312)
+-.+.| .|+-+.+...+.+++.||.|+. .++|....+++...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 444443 4988888644456789999984 888888777766655
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=41.28 E-value=42 Score=26.76 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=29.9
Q ss_pred EECCCC--cEEEEEecCCCCeEEeccCCCC--HHHHHHHHHHHHHHh
Q 045091 116 RQRHWG--KWVAEIRLPQNRMRVWLGTYDS--AEAAAYAYDRAAYKL 158 (312)
Q Consensus 116 r~r~~G--KW~A~Ir~p~~gkri~LGtFdT--~EEAArAYD~AA~kl 158 (312)
+-.+.| .|+-+.+...+.+++-||.|+. ..+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 444544 4988888644446788999985 788887777666555
No 7
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=34.63 E-value=51 Score=26.89 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=30.0
Q ss_pred EEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHhhC
Q 045091 123 WVAEIRLPQNRMRVWLGTYDSAEAAAYAYDRAAYKLRG 160 (312)
Q Consensus 123 W~A~Ir~p~~gkri~LGtFdT~EEAArAYD~AA~kl~G 160 (312)
|+|.|.. +..-+-++...+++.|..|..+|+.++=+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999994 66667777778899999999999998743
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=30.45 E-value=27 Score=25.20 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=18.6
Q ss_pred eEEeccCCCCHHHHHHHHHHHHH
Q 045091 134 MRVWLGTYDSAEAAAYAYDRAAY 156 (312)
Q Consensus 134 kri~LGtFdT~EEAArAYD~AA~ 156 (312)
-||++|.|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57888999999999988765443
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=28.72 E-value=46 Score=24.32 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=19.4
Q ss_pred CCeEEeccCCCCHHHHHHHHHHHHH
Q 045091 132 NRMRVWLGTYDSAEAAAYAYDRAAY 156 (312)
Q Consensus 132 ~gkri~LGtFdT~EEAArAYD~AA~ 156 (312)
.--||++|.|.+.++|..+-++...
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3367889999999999888765544
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=27.93 E-value=52 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=21.1
Q ss_pred CCceeeeEECCCCcEEEEEecCCCCeEE
Q 045091 109 KKLYRGVRQRHWGKWVAEIRLPQNRMRV 136 (312)
Q Consensus 109 ~S~YRGVr~r~~GKW~A~Ir~p~~gkri 136 (312)
.-.+.|+.+|+.|+|+.++.+. .|++.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~-~Gkr~ 35 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS-FGEPQ 35 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT-TSSEE
T ss_pred CccCCCeEEccCCcEEEEEEcC-CCCEE
Confidence 4568899999999999999873 45444
Done!