BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045094
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 23 DTDALTLGHASVWNLWSDGR 42
D DA T+ H +W +W+D R
Sbjct: 208 DYDAFTIEHVDLWTIWADFR 227
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 23 DTDALTLGHASVWNLWSDGR 42
D DA T+ H +W +W+D R
Sbjct: 208 DYDAFTIEHVDLWTIWADFR 227
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 1 DVFSFGVLLLETPSKKKNTHFY----DTDALTLGHASVWNLWSDGRAWELKGPILENEAS 56
DVF +GV+LLE + ++ D D + L V L + + L L+
Sbjct: 217 DVFGYGVMLLELITGQRAFDLARLANDDDVMLLDW--VKGLLKEKKLEALVDVDLQGNYK 274
Query: 57 YPILKRYMNMVLLSVGENATDRPAMSELVSM 87
+++ + + LL + +RP MSE+V M
Sbjct: 275 DEEVEQLIQVALLCTQSSPMERPKMSEVVRM 305
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 1 DVFSFGVLLLETPSKKKNTHFY----DTDALTLGHASVWNLWSDGRAWELKGPILENEAS 56
DVF +GV+LLE + ++ D D + L V L + + L L+
Sbjct: 225 DVFGYGVMLLELITGQRAFDLARLANDDDVMLLDW--VKGLLKEKKLEALVDVDLQGNYK 282
Query: 57 YPILKRYMNMVLLSVGENATDRPAMSELVSM 87
+++ + + LL + +RP MSE+V M
Sbjct: 283 DEEVEQLIQVALLCTQSSPMERPKMSEVVRM 313
>pdb|3BHD|A Chain A, Crystal Structure Of Human Thiamine Triphosphatase (Thtpa)
pdb|3BHD|B Chain B, Crystal Structure Of Human Thiamine Triphosphatase (Thtpa)
Length = 234
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 21 FYDTDALTLGHASVWNLWSDGRAWELKGP----ILENEASY------PILKRYMNMVLLS 70
+YDT L+L A W + WELK P +L Y P + + VL +
Sbjct: 58 YYDTPELSLXQADHWLRRREDSGWELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRA 117
Query: 71 VGENATDRPAMSELVSMHSNEVANLLSPK 99
G A D A+ L + EVA+ ++ +
Sbjct: 118 DGLGAGDVAAV--LGPLGLQEVASFVTKR 144
>pdb|2JMU|A Chain A, Nmr Structure Of The Mouse Thiamine Triphosphatase
Length = 224
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 21 FYDTDALTLGHASVWNLWSDGRAWELKGP 49
+YDT L+L + W +G WELK P
Sbjct: 39 YYDTSELSLMLSDHWLRQREGSGWELKCP 67
>pdb|1NSA|A Chain A, Three-Dimensional Structure Of Porcine Procarboxypeptidase
B: A Structural Basis Of Its Inactivity
Length = 395
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 22 YDTDALTLGHA-SVWNLWSDGRAWE----LKGPILENEASYPILKRYMNMVLLSVGENAT 76
+D+ + T GH+ +N W AW K P L + ++ N+ LL VG+ +
Sbjct: 84 FDSVSRTTGHSYEKYNNWETIEAWTEQVTSKNPDLISRSAIGTTFDGDNIYLLKVGKPGS 143
Query: 77 DRPAMSELVSMHSNE 91
++PA+ H+ E
Sbjct: 144 NKPAIFMDCGFHARE 158
>pdb|3TVL|A Chain A, Complex Between The Human Thiamine Triphosphatase And
Triphosphate
pdb|3TVL|B Chain B, Complex Between The Human Thiamine Triphosphatase And
Triphosphate
Length = 230
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 21 FYDTDALTLGHASVWNLWSDGRAWELKGP----ILENEASY------PILKRYMNMVLLS 70
+YDT L+L A W + WELK P +L Y P + + VL +
Sbjct: 39 YYDTPELSLMQADHWLRRREDSGWELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRA 98
Query: 71 VGENATDRPAMSELVSMHSNEVANLLSPK 99
G A D A+ L + EVA+ ++ +
Sbjct: 99 DGLGAGDVAAV--LGPLGLQEVASFVTKR 125
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 1 DVFSFGVLLLETPSKKKNTHFYDTDALTLGHASVWNLWS--DGRAWELKGPILENEASYP 58
DV+SFGV+L E + + + + + + W + S +G+ ++ P L ++
Sbjct: 223 DVYSFGVVLFEVLCAR--SAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPE 280
Query: 59 ILKRYMNMVLLSVGENATDRPAMSELV 85
L+++ + + + ++ DRP+M +++
Sbjct: 281 SLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 1 DVFSFGVLLLETPSKKKNTHFYDTDALTLGHASVWNLWS--DGRAWELKGPILENEASYP 58
DV+SFGV+L E + + + + + + W + S +G+ ++ P L ++
Sbjct: 223 DVYSFGVVLFEVLCAR--SAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPE 280
Query: 59 ILKRYMNMVLLSVGENATDRPAMSELV 85
L+++ + + + ++ DRP+M +++
Sbjct: 281 SLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|2GIG|A Chain A, Alteration Of Sequence Specificity Of The Type Ii
Restriction Endonuclease Hincii Through An Indirect
Readout Mechanism
pdb|2GIG|B Chain B, Alteration Of Sequence Specificity Of The Type Ii
Restriction Endonuclease Hincii Through An Indirect
Readout Mechanism
pdb|2GIH|A Chain A, Q138f Hincii Bound To Cognate Dna Gtcgac And Ca2+
pdb|2GIH|B Chain B, Q138f Hincii Bound To Cognate Dna Gtcgac And Ca2+
pdb|2GII|A Chain A, Q138f Hincii Bound To Cognate Dna Gttaac
pdb|2GII|B Chain B, Q138f Hincii Bound To Cognate Dna Gttaac
pdb|2GIJ|A Chain A, Q138f Hincii Bound To Cognate Dna Gttaac And Ca2+
pdb|2GIJ|B Chain B, Q138f Hincii Bound To Cognate Dna Gttaac And Ca2+
pdb|3E3Y|A Chain A, Q138f Hincii Bound To Gttaac And Cocrystallized With 5 Mm
Ca2+
pdb|3E3Y|B Chain B, Q138f Hincii Bound To Gttaac And Cocrystallized With 5 Mm
Ca2+
pdb|3E40|A Chain A, Q138f Hincii Bound To Gttaac And Cocrystallized With 5 Mm
Ca2+
pdb|3E40|B Chain B, Q138f Hincii Bound To Gttaac And Cocrystallized With 5 Mm
Ca2+
pdb|3E41|A Chain A, Q138f Hincii Bound To Gtcgac And 5 Mm Ca2+
pdb|3E41|B Chain B, Q138f Hincii Bound To Gtcgac And 5 Mm Ca2+
pdb|3E42|A Chain A, Q138f Hincii Bound To Gtcgac And Ca2+ (Cocrystallized)
pdb|3E42|B Chain B, Q138f Hincii Bound To Gtcgac And Ca2+ (Cocrystallized)
pdb|3E43|A Chain A, Q138f Hincii Bound To Gttaac And Cocrystallized With 2.5
Mm Mgcl2
pdb|3E43|B Chain B, Q138f Hincii Bound To Gttaac And Cocrystallized With 2.5
Mm Mgcl2
pdb|3E44|A Chain A, Q138f Hincii Bound To Cleaved Dna (Gtt | Aac) And Mn2+
pdb|3E44|B Chain B, Q138f Hincii Bound To Cleaved Dna (Gtt | Aac) And Mn2+
pdb|3E45|A Chain A, Q138f Hincii Bound To Noncognate Dna (Gtgcac) And Ca2+
pdb|3E45|B Chain B, Q138f Hincii Bound To Noncognate Dna (Gtgcac) And Ca2+
Length = 257
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 46 LKGP-ILENEASYPILKRYMNMVLLSVGENATDRPAMSELVSMHSNEVANLL 96
+K P I+ +EA Y + + LLS G+ AT+ ++ L N+ A++L
Sbjct: 64 MKNPAIIGHEARYKLFNSPTLLFLLSRGKAATENWSIENLFEEKQNDTADIL 115
>pdb|1KC6|A Chain A, Hincii Bound To Cognate Dna
pdb|1KC6|B Chain B, Hincii Bound To Cognate Dna
pdb|1KC6|C Chain C, Hincii Bound To Cognate Dna
pdb|1KC6|D Chain D, Hincii Bound To Cognate Dna
pdb|1TW8|A Chain A, Hincii Bound To Ca2+ And Cognate Dna Gtcgac
pdb|1TW8|B Chain B, Hincii Bound To Ca2+ And Cognate Dna Gtcgac
pdb|1TW8|C Chain C, Hincii Bound To Ca2+ And Cognate Dna Gtcgac
pdb|1TW8|D Chain D, Hincii Bound To Ca2+ And Cognate Dna Gtcgac
pdb|1XHU|A Chain A, Hincii Bound To Cleaved, Cognate Dna Containing Gtcgac
pdb|1XHU|B Chain B, Hincii Bound To Cleaved, Cognate Dna Containing Gtcgac
pdb|1XHU|C Chain C, Hincii Bound To Cleaved, Cognate Dna Containing Gtcgac
pdb|1XHU|D Chain D, Hincii Bound To Cleaved, Cognate Dna Containing Gtcgac
pdb|1XHV|A Chain A, Hincii Bound To Cleaved Cognate Dna Gtcgac And Mn2+
pdb|1XHV|B Chain B, Hincii Bound To Cleaved Cognate Dna Gtcgac And Mn2+
pdb|1XHV|C Chain C, Hincii Bound To Cleaved Cognate Dna Gtcgac And Mn2+
pdb|1XHV|D Chain D, Hincii Bound To Cleaved Cognate Dna Gtcgac And Mn2+
pdb|1TX3|A Chain A, Hincii Bound To Cognate Dna
pdb|1TX3|B Chain B, Hincii Bound To Cognate Dna
pdb|1TX3|C Chain C, Hincii Bound To Cognate Dna
pdb|1TX3|D Chain D, Hincii Bound To Cognate Dna
pdb|2GIE|A Chain A, Hincii Bound To Cognate Dna Gttaac
pdb|2GIE|B Chain B, Hincii Bound To Cognate Dna Gttaac
pdb|2GIE|C Chain C, Hincii Bound To Cognate Dna Gttaac
pdb|2GIE|D Chain D, Hincii Bound To Cognate Dna Gttaac
Length = 257
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 46 LKGP-ILENEASYPILKRYMNMVLLSVGENATDRPAMSELVSMHSNEVANLL 96
+K P I+ +EA Y + + LLS G+ AT+ ++ L N+ A++L
Sbjct: 64 MKNPAIIGHEARYKLFNSPTLLFLLSRGKAATENWSIENLFEEKQNDTADIL 115
>pdb|2AUD|A Chain A, Unliganded Hincii
Length = 257
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 46 LKGP-ILENEASYPILKRYMNMVLLSVGENATDRPAMSELVSMHSNEVANLL 96
+K P I+ +EA Y + + LLS G+ AT+ ++ L N+ A++L
Sbjct: 64 MKNPAIIGHEARYKLFNSPTLLFLLSRGKAATENWSIENLFEEKQNDTADIL 115
>pdb|3EBC|A Chain A, Structure Of N141a Hincii With Cognate Dna
pdb|3EBC|B Chain B, Structure Of N141a Hincii With Cognate Dna
Length = 317
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 46 LKGP-ILENEASYPILKRYMNMVLLSVGENATDRPAMSELVSMHSNEVANLL 96
+K P I+ +EA Y + + LLS G+ AT+ ++ L N+ A++L
Sbjct: 67 MKNPAIIGHEARYKLFNSPTLLFLLSRGKAATENWSIENLFEEKQNDTADIL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,156,575
Number of Sequences: 62578
Number of extensions: 110324
Number of successful extensions: 315
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 23
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)