Query 045097
Match_columns 80
No_of_seqs 100 out of 178
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06058 DCP1: Dcp1-like decap 100.0 6E-34 1.3E-38 192.3 2.9 67 14-80 2-68 (122)
2 KOG2868 Decapping enzyme compl 99.9 5E-28 1.1E-32 185.8 5.7 73 8-80 4-76 (335)
3 cd00837 EVH1 EVH1 (Enabled, Va 95.1 0.096 2.1E-06 33.9 5.7 40 38-77 6-46 (104)
4 smart00160 RanBD Ran-binding d 94.1 0.16 3.4E-06 34.2 5.2 39 38-77 24-63 (130)
5 PF00568 WH1: WH1 domain; Int 93.9 0.24 5.3E-06 32.2 5.6 41 38-78 13-54 (111)
6 cd00835 RanBD Ran-binding doma 93.2 0.24 5.2E-06 32.6 4.7 39 38-77 15-53 (122)
7 KOG4693 Uncharacterized conser 92.7 0.063 1.4E-06 42.4 1.6 22 41-62 105-126 (392)
8 PF00638 Ran_BP1: RanBP1 domai 91.5 0.59 1.3E-05 30.3 4.9 38 39-77 15-52 (122)
9 PF13415 Kelch_3: Galactose ox 84.6 1.2 2.5E-05 24.5 2.5 17 40-56 18-34 (49)
10 PF13964 Kelch_6: Kelch motif 82.3 1.3 2.9E-05 24.2 2.1 20 38-57 25-44 (50)
11 PF01344 Kelch_1: Kelch motif; 81.9 1.8 3.8E-05 23.0 2.5 20 37-56 24-43 (47)
12 PF09951 DUF2185: Protein of u 81.5 2.2 4.7E-05 27.5 3.2 37 18-56 50-86 (89)
13 PF14598 PAS_11: PAS domain; P 79.8 5 0.00011 25.8 4.5 49 30-79 54-103 (111)
14 smart00612 Kelch Kelch domain. 78.5 2.1 4.6E-05 22.0 2.0 19 39-57 13-31 (47)
15 PF13418 Kelch_4: Galactose ox 77.8 2 4.4E-05 23.2 1.9 18 39-56 27-44 (49)
16 smart00461 WH1 WASP homology r 73.8 16 0.00036 23.5 5.7 32 40-71 10-41 (106)
17 PF07646 Kelch_2: Kelch motif; 71.8 3.6 7.7E-05 22.5 1.9 22 38-59 27-48 (49)
18 cd01205 WASP WASP-type EVH1 do 71.5 13 0.00028 24.7 4.8 31 38-69 9-39 (105)
19 KOG3671 Actin regulatory prote 65.3 3.8 8.2E-05 34.4 1.5 48 22-70 27-74 (569)
20 cd01218 PH_phafin2 Phafin2 Pl 61.2 7 0.00015 25.6 2.0 20 59-79 7-27 (104)
21 COG3055 Uncharacterized protei 58.0 5.8 0.00013 32.0 1.3 21 41-61 113-133 (381)
22 PRK10708 hypothetical protein; 55.7 15 0.00032 22.6 2.5 20 59-79 29-48 (62)
23 PF10781 DSRB: Dextransucrase 54.5 16 0.00034 22.4 2.6 13 59-71 29-41 (62)
24 PLN02772 guanylate kinase 45.8 43 0.00093 27.0 4.5 21 41-61 51-71 (398)
25 cd01207 Ena-Vasp Enabled-VASP- 45.6 69 0.0015 21.4 4.8 37 39-75 7-47 (111)
26 KOG1747 Protein tyrosine kinas 42.8 25 0.00054 28.0 2.7 28 38-68 231-258 (342)
27 PLN02814 beta-glucosidase 40.5 13 0.00028 30.4 0.8 32 17-48 109-142 (504)
28 KOG2715 Uncharacterized conser 39.6 22 0.00047 26.4 1.8 23 50-72 19-41 (210)
29 PRK13511 6-phospho-beta-galact 37.9 12 0.00026 30.0 0.3 32 17-48 86-119 (469)
30 PF08755 YccV-like: Hemimethyl 35.7 49 0.0011 21.2 2.8 37 41-80 19-58 (100)
31 PLN02998 beta-glucosidase 35.6 16 0.00036 29.7 0.7 32 17-48 114-147 (497)
32 TIGR01233 lacG 6-phospho-beta- 35.0 13 0.00028 29.9 0.0 32 17-48 85-118 (467)
33 PHA03092 semaphorin-like prote 34.7 37 0.0008 23.6 2.2 32 31-64 32-63 (134)
34 PLN02153 epithiospecifier prot 33.2 32 0.0007 25.5 1.9 18 42-59 218-235 (341)
35 PLN02153 epithiospecifier prot 32.7 32 0.00069 25.5 1.8 17 42-58 277-293 (341)
36 PLN02849 beta-glucosidase 32.1 18 0.00038 29.6 0.4 32 17-48 111-144 (503)
37 KOG4693 Uncharacterized conser 31.8 21 0.00046 28.5 0.7 22 40-61 267-288 (392)
38 cd01206 Homer Homer type EVH1 31.6 1.4E+02 0.0031 20.2 4.6 39 38-76 8-48 (111)
39 PF07193 DUF1408: Protein of u 31.4 40 0.00086 21.3 1.8 16 52-69 38-53 (75)
40 cd02989 Phd_like_TxnDC9 Phosdu 29.4 65 0.0014 20.5 2.6 42 25-66 38-83 (113)
41 PF12673 DUF3794: Domain of un 29.4 37 0.00081 19.9 1.4 32 29-63 1-32 (87)
42 PHA03098 kelch-like protein; P 28.8 65 0.0014 25.3 3.0 17 41-57 406-422 (534)
43 PRK10557 hypothetical protein; 28.0 93 0.002 22.1 3.5 33 37-69 86-120 (192)
44 PRK09593 arb 6-phospho-beta-gl 26.4 31 0.00068 27.9 0.9 31 18-48 107-139 (478)
45 PF14157 YmzC: YmzC-like prote 26.0 56 0.0012 20.1 1.8 18 36-53 36-53 (63)
46 TIGR03548 mutarot_permut cycli 25.5 62 0.0013 23.7 2.2 17 41-57 271-287 (323)
47 cd02984 TRX_PICOT TRX domain, 25.5 1.1E+02 0.0025 17.8 3.1 42 25-66 30-76 (97)
48 PF07669 Eco57I: Eco57I restri 24.3 1.8E+02 0.0039 18.3 4.0 37 33-69 68-104 (106)
49 KOG3304 Surfeit family protein 24.0 71 0.0015 22.6 2.2 38 1-39 1-40 (148)
50 COG5171 YRB1 Ran GTPase-activa 23.5 39 0.00085 25.1 0.9 37 32-70 89-125 (211)
51 KOG0379 Kelch repeat-containin 23.1 50 0.0011 26.5 1.5 22 40-61 189-210 (482)
52 PF08077 Cm_res_leader: Chlora 22.9 79 0.0017 14.7 1.5 14 56-69 2-15 (17)
53 COG0266 Nei Formamidopyrimidin 22.3 49 0.0011 25.4 1.2 55 17-71 192-247 (273)
54 PHA03149 hypothetical protein; 21.8 53 0.0011 20.4 1.1 12 60-71 2-14 (66)
55 COG5253 MSS4 Phosphatidylinosi 21.5 70 0.0015 27.3 2.0 40 21-68 346-385 (612)
56 PF06355 Aegerolysin: Aegeroly 20.8 99 0.0022 21.0 2.4 26 41-66 52-77 (131)
57 TIGR03547 muta_rot_YjhT mutatr 20.3 96 0.0021 22.8 2.4 16 41-56 168-183 (346)
58 KOG0918 Selenium-binding prote 20.1 49 0.0011 27.4 0.9 27 50-77 177-203 (476)
No 1
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=99.98 E-value=6e-34 Score=192.32 Aligned_cols=67 Identities=49% Similarity=0.896 Sum_probs=63.7
Q ss_pred HhhhhhcHHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEEecC
Q 045097 14 QSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNR 80 (80)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iILNR 80 (80)
+++++|||+||||+||+|++||++|+||+||+||+++++|+|+|+||+||||+|+..|+|+|+||||
T Consensus 2 ~~~~~lnl~vL~r~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR 68 (122)
T PF06058_consen 2 RTRNELNLRVLQRYDPSIESILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNR 68 (122)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEES
T ss_pred chHHHHhHHHHhhhCchHHHHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecC
Confidence 5789999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=99.94 E-value=5e-28 Score=185.83 Aligned_cols=73 Identities=44% Similarity=0.829 Sum_probs=67.7
Q ss_pred CCCCChHhhhhhcHHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEEecC
Q 045097 8 MPNLDQQSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNR 80 (80)
Q Consensus 8 ~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iILNR 80 (80)
++......++++||+|||||||+|++||++|+||+||+||...++|+|+|||||||||+|+..|+++|+|+||
T Consensus 4 ~~~~~~~~~~a~nla~l~r~DP~ik~Ild~ashva~Y~fd~~~~eWnKtdiEGtffvY~R~~~p~~gf~i~NR 76 (335)
T KOG2868|consen 4 MADELIFRGRALNLAVLQRIDPYIKSILDVASHVALYTFDFGANEWNKTDIEGTFFVYKRDASPRHGFLIVNR 76 (335)
T ss_pred hhHHHHHhhhhhhHHHHhhhCHHHHHHHhhccceeEEEeccccchhhhccceeEEEEEEccCCCccceEeecC
Confidence 3444445567899999999999999999999999999999999999999999999999999999999999998
No 3
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=95.07 E-value=0.096 Score=33.93 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCcEEEEeeeCCCCCeeeC-CceeeEEEEEeCCCCceeEEE
Q 045097 38 AAHVTFYEFNIDLSQWSRK-DVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~-~vEGtLFv~~R~~~P~~~~iI 77 (80)
++-|.||.+|+++++|.+. +..|.+-+++-...-.|.|.+
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~ 46 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRG 46 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEE
Confidence 4678999999999999998 788999999877655565554
No 4
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=94.14 E-value=0.16 Score=34.23 Aligned_cols=39 Identities=26% Similarity=0.595 Sum_probs=31.8
Q ss_pred CCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCC-CceeEEE
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ-PRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~-P~~~~iI 77 (80)
...|-||.|+.++++|.-.|+ |.|.|.+.... -++++++
T Consensus 24 ~~r~KL~~~~~~~~~WkerG~-G~lki~~~~~~~~~~Rivm 63 (130)
T smart00160 24 SARAKLYRFANDKKEWKERGV-GDLKILKSKDNGGKVRIVM 63 (130)
T ss_pred EEEeEEEEEcCCCCCCeeccE-EEEEEEEcCCCCCeEEEEE
Confidence 357899999998999999998 99999887765 4666653
No 5
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=93.91 E-value=0.24 Score=32.17 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=33.4
Q ss_pred CCcEEEEeeeCCCCC-eeeCCceeeEEEEEeCCCCceeEEEe
Q 045097 38 AAHVTFYEFNIDLSQ-WSRKDVEGSLFVVKRNTQPRFQFVVM 78 (80)
Q Consensus 38 as~v~lY~f~~~t~~-W~K~~vEGtLFv~~R~~~P~~~~iIL 78 (80)
++-|-||..|+.+++ |.+....|.+-+++....-.|.|.+.
T Consensus 13 ~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~ 54 (111)
T PF00568_consen 13 TAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLY 54 (111)
T ss_dssp EEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEE
Confidence 466889999998888 99999999999998876656666553
No 6
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=93.19 E-value=0.24 Score=32.56 Aligned_cols=39 Identities=18% Similarity=0.614 Sum_probs=30.7
Q ss_pred CCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
...|-||.|+.++++|...|+ |+|.|......=++++++
T Consensus 15 ~~r~KLy~~~~~~~~WkerG~-G~lki~~~k~~~~~Rivm 53 (122)
T cd00835 15 SVRAKLYRFDDETKEWKERGV-GELKILKHKDTGKYRLLM 53 (122)
T ss_pred EEEeEEEEEcCCCCCCeeceE-EEEEEEEcCCCCcEEEEE
Confidence 456899999998999999886 899998876544565543
No 7
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=92.75 E-value=0.063 Score=42.36 Aligned_cols=22 Identities=32% Similarity=0.742 Sum_probs=20.1
Q ss_pred EEEEeeeCCCCCeeeCCceeeE
Q 045097 41 VTFYEFNIDLSQWSRKDVEGSL 62 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~vEGtL 62 (80)
-+||.||+++++|.|..|||++
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~v 126 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFV 126 (392)
T ss_pred ceeeeeccccccccccceeeec
Confidence 4799999999999999999974
No 8
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=91.55 E-value=0.59 Score=30.32 Aligned_cols=38 Identities=21% Similarity=0.636 Sum_probs=28.5
Q ss_pred CcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
..|-||.|+..+++|...|+ |+|-|.+....=+++|++
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~-G~l~i~~~k~~~~~Rlvm 52 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGV-GTLKILKHKETGKYRLVM 52 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEETTSCEEEEEE
T ss_pred EEEEEEEEeCCCCCccccce-eEEEEEEccCCcceEEEE
Confidence 45899999998899987775 888887765544565554
No 9
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=84.61 E-value=1.2 Score=24.52 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=14.7
Q ss_pred cEEEEeeeCCCCCeeeC
Q 045097 40 HVTFYEFNIDLSQWSRK 56 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~ 56 (80)
.--+|.||.++++|++.
T Consensus 18 ~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRI 34 (49)
T ss_pred ecCEEEEECCCCEEEEC
Confidence 35689999999999987
No 10
>PF13964 Kelch_6: Kelch motif
Probab=82.27 E-value=1.3 Score=24.16 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=16.3
Q ss_pred CCcEEEEeeeCCCCCeeeCC
Q 045097 38 AAHVTFYEFNIDLSQWSRKD 57 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~ 57 (80)
...-.++.||.++++|++..
T Consensus 25 ~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 25 KYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CccccEEEEcCCCCcEEECC
Confidence 34567899999999999853
No 11
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=81.91 E-value=1.8 Score=23.03 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=16.9
Q ss_pred hCCcEEEEeeeCCCCCeeeC
Q 045097 37 TAAHVTFYEFNIDLSQWSRK 56 (80)
Q Consensus 37 ~as~v~lY~f~~~t~~W~K~ 56 (80)
......++.||.++++|++.
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEE
T ss_pred CceeeeEEEEeCCCCEEEEc
Confidence 45677899999999999974
No 12
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=81.49 E-value=2.2 Score=27.52 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=30.2
Q ss_pred hhcHHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeC
Q 045097 18 LLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRK 56 (80)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~ 56 (80)
-..|+.+-++||.|..|++. +.-+.|..+.+.+ |.+-
T Consensus 50 i~~ln~i~~idp~i~~ll~~-p~Gt~~er~e~g~-~~~v 86 (89)
T PF09951_consen 50 IVDLNTILNIDPSIIPLLDA-PYGTAFERDEDGE-FYEV 86 (89)
T ss_pred EEeHHHHHhhChHHHHHhcC-CCCceEEECCCCC-EEEe
Confidence 34689999999999999985 7788888887644 9874
No 13
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=79.75 E-value=5 Score=25.82 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=35.2
Q ss_pred chHHHhhhCCcE-EEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEEec
Q 045097 30 FIEEILITAAHV-TFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMN 79 (80)
Q Consensus 30 ~I~~Il~~as~v-~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iILN 79 (80)
..++++....-+ ..|.|-...++|.....++++|.-..+..|.| |+..|
T Consensus 54 ~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~n~~~~~~~~-Iv~~n 103 (111)
T PF14598_consen 54 HHREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFYNPWTSKPEF-IVCTN 103 (111)
T ss_dssp HHHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEEETTTTCEEE-EEEEE
T ss_pred HHHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEECCCCCCccE-EEEEE
Confidence 344555554434 48999999999999999999999777777755 55544
No 14
>smart00612 Kelch Kelch domain.
Probab=78.48 E-value=2.1 Score=21.97 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=15.7
Q ss_pred CcEEEEeeeCCCCCeeeCC
Q 045097 39 AHVTFYEFNIDLSQWSRKD 57 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~ 57 (80)
....++.||+++++|++..
T Consensus 13 ~~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLP 31 (47)
T ss_pred eeeeEEEECCCCCeEccCC
Confidence 4567899999999998754
No 15
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=77.78 E-value=2 Score=23.20 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=12.6
Q ss_pred CcEEEEeeeCCCCCeeeC
Q 045097 39 AHVTFYEFNIDLSQWSRK 56 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~ 56 (80)
.+--+|.||.++++|++.
T Consensus 27 ~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E---EEEEETTTTEEEE-
T ss_pred ccCCEEEEECCCCEEEEC
Confidence 445689999999999986
No 16
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=73.81 E-value=16 Score=23.53 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=21.7
Q ss_pred cEEEEeeeCCCCCeeeCCceeeEEEEEeCCCC
Q 045097 40 HVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQP 71 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P 71 (80)
-+++-.|+..++.|.+.+..|.+-+..-....
T Consensus 10 ~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~ 41 (106)
T smart00461 10 RAVVQLYDADTKKWVPTGEGGAANLVIDKNQR 41 (106)
T ss_pred EEEEEEEeCCCCCeEECCCCCEEEEEEEecCC
Confidence 35556666767889999998866665544333
No 17
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=71.75 E-value=3.6 Score=22.50 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=17.0
Q ss_pred CCcEEEEeeeCCCCCeeeCCce
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVE 59 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vE 59 (80)
...-.++.||.++++|++...-
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cccceeEEEECCCCEEeecCCC
Confidence 4455688999999999987543
No 18
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=71.53 E-value=13 Score=24.74 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=25.9
Q ss_pred CCcEEEEeeeCCCCCeeeCCceeeEEEEEeCC
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~ 69 (80)
++-|-||.=.++.++|.++ .+|.+-+++-..
T Consensus 9 ~aVvqlY~a~p~~~~W~~~-~~Gvl~~vkD~~ 39 (105)
T cd01205 9 TAVVQLYKAYPDPGRWTKT-LTGAVCLVKDNV 39 (105)
T ss_pred EEEEEEEEecCCCCeeEEE-eEEEEEEEEECC
Confidence 4567889987778999999 999999988653
No 19
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=65.34 E-value=3.8 Score=34.38 Aligned_cols=48 Identities=27% Similarity=0.379 Sum_probs=35.0
Q ss_pred HHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCC
Q 045097 22 TVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ 70 (80)
Q Consensus 22 ~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~ 70 (80)
..|+++-+. +-..-.++-|-||.=+.+.++|.|++.-|.|.+++-...
T Consensus 27 e~lf~~lgk-~~~~l~aAVVqLY~a~p~~~~W~~~~~~Gal~lVkD~~~ 74 (569)
T KOG3671|consen 27 ETLFKLLGK-KCKTLAAAVVQLYKAYPDPNHWNKTGLCGALCLVKDNAQ 74 (569)
T ss_pred HHHHHHhcc-chhhHHHHHHHHHhhcCChhhhccccCceeEEEeecccc
Confidence 344555555 333334556778998888899999999999999987754
No 20
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=61.24 E-value=7 Score=25.59 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=15.6
Q ss_pred eeeEE-EEEeCCCCceeEEEec
Q 045097 59 EGSLF-VVKRNTQPRFQFVVMN 79 (80)
Q Consensus 59 EGtLF-v~~R~~~P~~~~iILN 79 (80)
||.|- +|.+...||+ |+++|
T Consensus 7 eG~L~K~~rk~~~~R~-ffLFn 27 (104)
T cd01218 7 EGVLTKMCRKKPKQRQ-FFLFN 27 (104)
T ss_pred cCcEEEeecCCCceEE-EEEec
Confidence 78887 6777788886 88777
No 21
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.96 E-value=5.8 Score=31.95 Aligned_cols=21 Identities=14% Similarity=0.464 Sum_probs=17.6
Q ss_pred EEEEeeeCCCCCeeeCCceee
Q 045097 41 VTFYEFNIDLSQWSRKDVEGS 61 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~vEGt 61 (80)
-.+|.||+.+++|+|.+..-+
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP 133 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSP 133 (381)
T ss_pred eeeEEecCCCChhheeccccc
Confidence 468999999999999886543
No 22
>PRK10708 hypothetical protein; Provisional
Probab=55.69 E-value=15 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=14.7
Q ss_pred eeeEEEEEeCCCCceeEEEec
Q 045097 59 EGSLFVVKRNTQPRFQFVVMN 79 (80)
Q Consensus 59 EGtLFv~~R~~~P~~~~iILN 79 (80)
||+||++.....| -++-..|
T Consensus 29 EG~MyLvaL~dYP-~GiWFFN 48 (62)
T PRK10708 29 EGTMYLVSLEDYP-LGIWFFN 48 (62)
T ss_pred CcEEEEEEcCcCC-CceEEEe
Confidence 8999999999888 3443333
No 23
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=54.48 E-value=16 Score=22.44 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=12.1
Q ss_pred eeeEEEEEeCCCC
Q 045097 59 EGSLFVVKRNTQP 71 (80)
Q Consensus 59 EGtLFv~~R~~~P 71 (80)
||++|++.....|
T Consensus 29 EG~MYLvaL~dYP 41 (62)
T PF10781_consen 29 EGTMYLVALEDYP 41 (62)
T ss_pred CcEEEEEEcCcCC
Confidence 8999999999888
No 24
>PLN02772 guanylate kinase
Probab=45.83 E-value=43 Score=27.02 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.2
Q ss_pred EEEEeeeCCCCCeeeCCceee
Q 045097 41 VTFYEFNIDLSQWSRKDVEGS 61 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~vEGt 61 (80)
-.||-||..++.|.+.-|.|+
T Consensus 51 ~~v~i~D~~t~~W~~P~V~G~ 71 (398)
T PLN02772 51 IGVQILDKITNNWVSPIVLGT 71 (398)
T ss_pred ceEEEEECCCCcEecccccCC
Confidence 479999999999999999886
No 25
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=45.59 E-value=69 Score=21.44 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=25.4
Q ss_pred CcEEEEeeeCCCCCeeeCCc--ee--eEEEEEeCCCCceeE
Q 045097 39 AHVTFYEFNIDLSQWSRKDV--EG--SLFVVKRNTQPRFQF 75 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~v--EG--tLFv~~R~~~P~~~~ 75 (80)
+-|.|..||+.++.|.-.+- .| ++-+|......-|+|
T Consensus 7 ~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrI 47 (111)
T cd01207 7 ARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRV 47 (111)
T ss_pred EEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEE
Confidence 56788999999999998765 25 455666554444443
No 26
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=42.75 E-value=25 Score=28.02 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCcEEEEeeeCCCCCeeeCCceeeEEEEEeC
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~ 68 (80)
.+.=++|.|++ .|++...|-.+|||+--
T Consensus 231 ~prY~ff~~~h---t~eGD~~es~~FIYS~P 258 (342)
T KOG1747|consen 231 GPRYHFFLFKH---THEGDPLESIVFIYSMP 258 (342)
T ss_pred CCceEEEeccc---ccCCCCceeEEEEEECC
Confidence 34456888885 89999999999999853
No 27
>PLN02814 beta-glucosidase
Probab=40.51 E-value=13 Score=30.41 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=29.3
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.++|-..|+.|+--|.+++.. -+.|+||+||.
T Consensus 109 g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 109 GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 368999999999999999987 88999999995
No 28
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=39.59 E-value=22 Score=26.41 Aligned_cols=23 Identities=39% Similarity=0.843 Sum_probs=19.7
Q ss_pred CCCeeeCCceeeEEEEEeCCCCc
Q 045097 50 LSQWSRKDVEGSLFVVKRNTQPR 72 (80)
Q Consensus 50 t~~W~K~~vEGtLFv~~R~~~P~ 72 (80)
...|.|.+|-||.|+-.|...|+
T Consensus 19 ~s~wVRlNVGGt~f~TtktTl~r 41 (210)
T KOG2715|consen 19 VSLWVRLNVGGTVFLTTKTTLPR 41 (210)
T ss_pred ceEEEEEecCCEEEEeeeecccc
Confidence 36899999999999999987553
No 29
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=37.92 E-value=12 Score=29.98 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=28.9
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.++|-..|+.||.-|.+++.. -+.|+||+||.
T Consensus 86 g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 119 (469)
T PRK13511 86 GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDT 119 (469)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 368999999999999999976 78999999995
No 30
>PF08755 YccV-like: Hemimethylated DNA-binding protein YccV like; InterPro: IPR011722 This entry describes the small protein from Escherichia coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein []. The model entry describes a domain in longer eukaryotic proteins.; PDB: 1VBV_A.
Probab=35.72 E-value=49 Score=21.16 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=12.0
Q ss_pred EEEEeeeCC---CCCeeeCCceeeEEEEEeCCCCceeEEEecC
Q 045097 41 VTFYEFNID---LSQWSRKDVEGSLFVVKRNTQPRFQFVVMNR 80 (80)
Q Consensus 41 v~lY~f~~~---t~~W~K~~vEGtLFv~~R~~~P~~~~iILNR 80 (80)
++|+-+|+. +.+|.+..-...+ .+..+|.|.+++-++
T Consensus 19 GVIvgwD~~~~~~~~W~~~~~~~~~---~~~~qPfY~vLv~~~ 58 (100)
T PF08755_consen 19 GVIVGWDPECQAPEEWIEQMGVDNL---PRRNQPFYHVLVDDR 58 (100)
T ss_dssp EEEEEEE---------------------------EEEEEEE-S
T ss_pred EEEECcccccCCCchHHHhcccccc---ccCCCCcEEEEEecC
Confidence 678888865 6789765433323 335689999988664
No 31
>PLN02998 beta-glucosidase
Probab=35.56 E-value=16 Score=29.72 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=29.0
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.+.|-..|+.|+--|.+++.. -+.|+||+||.
T Consensus 114 g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dl 147 (497)
T PLN02998 114 GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDL 147 (497)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 358999999999999999987 78999999985
No 32
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=34.96 E-value=13 Score=29.91 Aligned_cols=32 Identities=16% Similarity=0.120 Sum_probs=29.0
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.++|-..|+.||--|.+++.. -+.|+||+||.
T Consensus 85 ~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 118 (467)
T TIGR01233 85 GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDT 118 (467)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCC
Confidence 368999999999999999986 69999999995
No 33
>PHA03092 semaphorin-like protein; Provisional
Probab=34.67 E-value=37 Score=23.59 Aligned_cols=32 Identities=16% Similarity=0.467 Sum_probs=24.9
Q ss_pred hHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEE
Q 045097 31 IEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64 (80)
Q Consensus 31 I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv 64 (80)
|.++|.+...-+||+|.. ++-.|++.-.+=++
T Consensus 32 iddvlytgvngavytfsn--n~lnktglan~nyi 63 (134)
T PHA03092 32 IDDVLYTGVNGAVYTFSN--NKLNKTGLANTNYI 63 (134)
T ss_pred hhhhhccccCceEEEecC--CccccccccccceE
Confidence 678999999999999986 67777765554443
No 34
>PLN02153 epithiospecifier protein
Probab=33.16 E-value=32 Score=25.48 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=14.9
Q ss_pred EEEeeeCCCCCeeeCCce
Q 045097 42 TFYEFNIDLSQWSRKDVE 59 (80)
Q Consensus 42 ~lY~f~~~t~~W~K~~vE 59 (80)
.||.||+++++|++....
T Consensus 218 ~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 218 AVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEcCCCcEEecccc
Confidence 588999999999986543
No 35
>PLN02153 epithiospecifier protein
Probab=32.67 E-value=32 Score=25.50 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=14.6
Q ss_pred EEEeeeCCCCCeeeCCc
Q 045097 42 TFYEFNIDLSQWSRKDV 58 (80)
Q Consensus 42 ~lY~f~~~t~~W~K~~v 58 (80)
.||.||.++++|++...
T Consensus 277 ~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 277 EGYALDTETLVWEKLGE 293 (341)
T ss_pred cEEEEEcCccEEEeccC
Confidence 68999999999998754
No 36
>PLN02849 beta-glucosidase
Probab=32.07 E-value=18 Score=29.59 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=29.2
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.++|-..|+.||--|.+++.. .+.|+||+||.
T Consensus 111 g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dl 144 (503)
T PLN02849 111 GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDH 144 (503)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCC
Confidence 368999999999999999987 89999999985
No 37
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=31.83 E-value=21 Score=28.49 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.8
Q ss_pred cEEEEeeeCCCCCeeeCCceee
Q 045097 40 HVTFYEFNIDLSQWSRKDVEGS 61 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~~vEGt 61 (80)
|--||.||+.+.-|.+..+.|.
T Consensus 267 fndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 267 FNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred hcceeecccccchheeeeccCC
Confidence 3458999999999999888875
No 38
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=31.59 E-value=1.4e+02 Score=20.23 Aligned_cols=39 Identities=5% Similarity=0.260 Sum_probs=25.5
Q ss_pred CCcEEEEeeeCCCC-CeeeCCcee-eEEEEEeCCCCceeEE
Q 045097 38 AAHVTFYEFNIDLS-QWSRKDVEG-SLFVVKRNTQPRFQFV 76 (80)
Q Consensus 38 as~v~lY~f~~~t~-~W~K~~vEG-tLFv~~R~~~P~~~~i 76 (80)
++-+.|..||+.+. .|.-.+-.. ++-+|.-....-|++|
T Consensus 8 ~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi 48 (111)
T cd01206 8 STRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRII 48 (111)
T ss_pred eeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEE
Confidence 35678889999765 999877421 4445555555566554
No 39
>PF07193 DUF1408: Protein of unknown function (DUF1408); InterPro: IPR009848 This entry is represented by Bacteriophage bIL285, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Lactococcus lactis and related phage proteins of around 75 residues in length. The function of this family is unknown.
Probab=31.43 E-value=40 Score=21.26 Aligned_cols=16 Identities=38% Similarity=0.983 Sum_probs=13.8
Q ss_pred CeeeCCceeeEEEEEeCC
Q 045097 52 QWSRKDVEGSLFVVKRNT 69 (80)
Q Consensus 52 ~W~K~~vEGtLFv~~R~~ 69 (80)
.|++.| |+||+.+|+.
T Consensus 38 t~~r~d--gs~y~~~r~~ 53 (75)
T PF07193_consen 38 TWERPD--GSMYMTSRKK 53 (75)
T ss_pred EEEcCC--CeEEEEEccc
Confidence 798876 9999999985
No 40
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=29.39 E-value=65 Score=20.45 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=30.1
Q ss_pred hhhCcchHHHhhhCCcEEEEeeeCCCCC--eeeCCcee--eEEEEE
Q 045097 25 QRIDPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG--SLFVVK 66 (80)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~t~~--W~K~~vEG--tLFv~~ 66 (80)
+..+|.++++...-+.+.+|+-|.+.+. |++-+|.+ |+.+|+
T Consensus 38 ~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 38 KIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 4567777788777777899999987664 77777777 455554
No 41
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=29.37 E-value=37 Score=19.94 Aligned_cols=32 Identities=38% Similarity=0.395 Sum_probs=24.1
Q ss_pred cchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEE
Q 045097 29 PFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLF 63 (80)
Q Consensus 29 p~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLF 63 (80)
|.|.+|+..-..+.+-......+ |.-++|.+.
T Consensus 1 P~I~~Il~~~~~v~i~~~~v~~~---kv~v~G~l~ 32 (87)
T PF12673_consen 1 PDIEKILSSDAEVKITEIKVIDD---KVIVEGELN 32 (87)
T ss_pred CChHhEEEeeeEEEEEEEEEECC---EEEEEEEEE
Confidence 67888888888888777765444 778899765
No 42
>PHA03098 kelch-like protein; Provisional
Probab=28.82 E-value=65 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=14.2
Q ss_pred EEEEeeeCCCCCeeeCC
Q 045097 41 VTFYEFNIDLSQWSRKD 57 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~ 57 (80)
-.++.||+.+++|++..
T Consensus 406 ~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 406 KTVECFSLNTNKWSKGS 422 (534)
T ss_pred ceEEEEeCCCCeeeecC
Confidence 56899999999999753
No 43
>PRK10557 hypothetical protein; Provisional
Probab=27.96 E-value=93 Score=22.15 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=23.2
Q ss_pred hCCcEEEEeeeCCCC-Ceee-CCceeeEEEEEeCC
Q 045097 37 TAAHVTFYEFNIDLS-QWSR-KDVEGSLFVVKRNT 69 (80)
Q Consensus 37 ~as~v~lY~f~~~t~-~W~K-~~vEGtLFv~~R~~ 69 (80)
....|.+|.||.+.+ .|++ .+.|--.|.|+.+.
T Consensus 86 ~~~sCi~~~YD~n~nG~~~~~~~~~~e~~gyrl~~ 120 (192)
T PRK10557 86 AQGSCLIVAWDLNSNGRWEGAPHKESEQFGYRLRN 120 (192)
T ss_pred CCCCeEEEEEcCCCCCcccCCCCCccceEEEEecC
Confidence 367789999996544 4997 44555688888553
No 44
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=26.40 E-value=31 Score=27.86 Aligned_cols=31 Identities=23% Similarity=0.106 Sum_probs=28.5
Q ss_pred hhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 18 LLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.+|-..|+.||--|..++.. .+.|+||+||.
T Consensus 107 ~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dl 139 (478)
T PRK09593 107 EPNEAGLQFYEDIFKECHKYGIEPLVTITHFDC 139 (478)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 58999999999999999987 68999999995
No 45
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=25.97 E-value=56 Score=20.14 Aligned_cols=18 Identities=6% Similarity=0.313 Sum_probs=13.3
Q ss_pred hhCCcEEEEeeeCCCCCe
Q 045097 36 ITAAHVTFYEFNIDLSQW 53 (80)
Q Consensus 36 ~~as~v~lY~f~~~t~~W 53 (80)
+-.-++-+|+||+++|+=
T Consensus 36 ~e~~~iKIfkyd~~tNei 53 (63)
T PF14157_consen 36 DEDGQIKIFKYDEDTNEI 53 (63)
T ss_dssp -ETTEEEEEEEETTTTEE
T ss_pred ecCCeEEEEEeCCCCCeE
Confidence 445667789999998864
No 46
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=25.52 E-value=62 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=14.2
Q ss_pred EEEEeeeCCCCCeeeCC
Q 045097 41 VTFYEFNIDLSQWSRKD 57 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~ 57 (80)
-.++.||+++++|++.+
T Consensus 271 ~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 271 RKILIYNVRTGKWKSIG 287 (323)
T ss_pred ceEEEEECCCCeeeEcc
Confidence 35999999999999754
No 47
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=25.45 E-value=1.1e+02 Score=17.76 Aligned_cols=42 Identities=10% Similarity=0.240 Sum_probs=26.8
Q ss_pred hhhCcchHHHhhh-CCcEEEEeeeCCCCC--eeeCCcee--eEEEEE
Q 045097 25 QRIDPFIEEILIT-AAHVTFYEFNIDLSQ--WSRKDVEG--SLFVVK 66 (80)
Q Consensus 25 ~R~Dp~I~~Il~~-as~v~lY~f~~~t~~--W~K~~vEG--tLFv~~ 66 (80)
++.+|.++++... ...+.+|..|.++.. +.+-++.| ++.+|+
T Consensus 30 ~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 30 KQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEE
Confidence 4556666666666 678899999865322 34566776 456665
No 48
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=24.29 E-value=1.8e+02 Score=18.33 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=29.0
Q ss_pred HHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCC
Q 045097 33 EILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (80)
Q Consensus 33 ~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~ 69 (80)
.|+....-..++.|.....-++...+.+.+++.+++.
T Consensus 68 ~l~~~~~i~~i~~f~~~~~vF~~a~v~t~I~~~~k~~ 104 (106)
T PF07669_consen 68 FLLNNTNIKKIIDFGERKKVFEDASVYTCIIIFKKSK 104 (106)
T ss_pred HHhcCCCeeEEEECCCcccCCCCCCcceeEEEEEecC
Confidence 3556677778999987555799999999999888764
No 49
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=24.02 E-value=71 Score=22.65 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCC--CCCCCCCCChHhhhhhcHHHHhhhCcchHHHhhhCC
Q 045097 1 MSQ--NGKLMPNLDQQSTKLLNLTVLQRIDPFIEEILITAA 39 (80)
Q Consensus 1 ~~~--~~~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~as 39 (80)
|++ ||...|-++.. ..++==+.+||.+-.|++|++...
T Consensus 1 M~~g~GG~s~~~~~as-k~al~k~~~~Rl~ddIkS~~dNF~ 40 (148)
T KOG3304|consen 1 MAQGGGGGSRPALPAS-KEALLKSYNKRLKDDIKSIMDNFT 40 (148)
T ss_pred CCCCCCCCCccccHHH-HHHHHHHHHHHHHHhHHHHHHhHH
Confidence 664 35566555443 345555677999999999988643
No 50
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=23.54 E-value=39 Score=25.10 Aligned_cols=37 Identities=19% Similarity=0.632 Sum_probs=26.8
Q ss_pred HHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCC
Q 045097 32 EEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ 70 (80)
Q Consensus 32 ~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~ 70 (80)
+.||+.+ .|-||.||.++.+|+-.+ +|.+-|.+-+..
T Consensus 89 E~vlfK~-RaKLfrFd~~akewkERg-tGd~~~lkhkkt 125 (211)
T COG5171 89 ETVLFKA-RAKLFRFDEEAKEWKERG-TGDMIILKHKKT 125 (211)
T ss_pred hhhhhhh-hhhheeehHHHHHHHhcC-CCcEEEEecccc
Confidence 4466664 689999999999998765 566666554443
No 51
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=23.11 E-value=50 Score=26.48 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.2
Q ss_pred cEEEEeeeCCCCCeeeCCceee
Q 045097 40 HVTFYEFNIDLSQWSRKDVEGS 61 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~~vEGt 61 (80)
.=-||-||.++++|.+.++.|.
T Consensus 189 ~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 189 LNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred eeeeeeeccccccceecccCCC
Confidence 3457888888999999999985
No 52
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=22.88 E-value=79 Score=14.66 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=11.1
Q ss_pred CCceeeEEEEEeCC
Q 045097 56 KDVEGSLFVVKRNT 69 (80)
Q Consensus 56 ~~vEGtLFv~~R~~ 69 (80)
.++-|.|.++.|..
T Consensus 2 sgvpgalavvtrrt 15 (17)
T PF08077_consen 2 SGVPGALAVVTRRT 15 (17)
T ss_pred CCCCceEEEEEEee
Confidence 36889999998863
No 53
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.34 E-value=49 Score=25.44 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=40.4
Q ss_pred hhhcHHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeee-CCceeeEEEEEeCCCC
Q 045097 17 KLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSR-KDVEGSLFVVKRNTQP 71 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K-~~vEGtLFv~~R~~~P 71 (80)
..++..-+.++-..|++||..|--..-+++..-.+.=-+ ...+..|+||-|..+|
T Consensus 192 ~~l~~~~~~~l~~~i~~vl~~ai~~gGtt~r~~~~~~g~~G~fq~~l~VYgR~Gep 247 (273)
T COG0266 192 GDLSLAQLALLHEAIKDVLADAIERGGTTLRDFVNADGKPGYFQQELKVYGRAGEP 247 (273)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhCCCcccceeccCCCCCccceeEEEecCCCCC
Confidence 567777788888899999998877777777643221111 2477789999999988
No 54
>PHA03149 hypothetical protein; Provisional
Probab=21.84 E-value=53 Score=20.42 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.1
Q ss_pred eeEE-EEEeCCCC
Q 045097 60 GSLF-VVKRNTQP 71 (80)
Q Consensus 60 GtLF-v~~R~~~P 71 (80)
|+|| +|+|...|
T Consensus 2 G~l~SiCkRr~nP 14 (66)
T PHA03149 2 GTLCSICKRRPNP 14 (66)
T ss_pred cceeeeecCCCCC
Confidence 6777 78888766
No 55
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=21.54 E-value=70 Score=27.31 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=24.7
Q ss_pred HHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeC
Q 045097 21 LTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (80)
Q Consensus 21 L~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~ 68 (80)
+++||++.-.=..++...+.+.+.+-+ .|--|++|++.|+
T Consensus 346 Fr~lR~l~g~~~alvsl~sryil~E~~--------~GKSGSff~~trD 385 (612)
T COG5253 346 FRELRALCGCDEALVSLLSRYILWESN--------GGKSGSFFLFTRD 385 (612)
T ss_pred HHHHHHHhCCcHHHHHHHhhhheeccC--------CCcccceEEEecc
Confidence 445555433323355556666665554 3567999999998
No 56
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=20.76 E-value=99 Score=21.02 Aligned_cols=26 Identities=19% Similarity=0.011 Sum_probs=22.1
Q ss_pred EEEEeeeCCCCCeeeCCceeeEEEEE
Q 045097 41 VTFYEFNIDLSQWSRKDVEGSLFVVK 66 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~vEGtLFv~~ 66 (80)
-.-|.+.....+|.-.+.||+|-+|.
T Consensus 52 ~~~~~i~scGr~~~~sGTEGsfdl~d 77 (131)
T PF06355_consen 52 GGSYSICSCGREGSPSGTEGSFDLYD 77 (131)
T ss_pred CCeEEEEEecCCCCCcCceEEEEEEe
Confidence 55677888889999999999999994
No 57
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=20.31 E-value=96 Score=22.84 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=14.0
Q ss_pred EEEEeeeCCCCCeeeC
Q 045097 41 VTFYEFNIDLSQWSRK 56 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~ 56 (80)
-.++.||+.+++|++.
T Consensus 168 ~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNL 183 (346)
T ss_pred ceEEEEECCCCceeEC
Confidence 5689999999999974
No 58
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=20.12 E-value=49 Score=27.42 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 50 LSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 50 t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
.++|+|-+ -.++|.|.-.-+|+++.+|
T Consensus 177 k~tw~~~~-~~p~~gyDfwyqpr~~~mI 203 (476)
T KOG0918|consen 177 KGTWEKPG-HSPLFGYDFWYQPRHNVMI 203 (476)
T ss_pred ecccccCC-CccccccceeeccccceEE
Confidence 45899999 9999999999999999887
Done!