Query 045097
Match_columns 80
No_of_seqs 100 out of 178
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lyd_A Decapping protein 1; DC 100.0 2.5E-34 8.5E-39 196.2 4.5 70 11-80 8-77 (134)
2 2qkl_A DCP1 protein, SPBC3B9.2 100.0 1.9E-33 6.6E-38 190.5 2.4 66 14-80 6-71 (127)
3 1q67_A Decapping protein invol 99.9 1.4E-27 4.9E-32 174.8 3.2 56 16-71 19-74 (231)
4 1rrp_B Nuclear pore complex pr 92.1 0.29 9.9E-06 32.1 5.1 38 39-77 27-64 (134)
5 1xke_A RAN-binding protein 2; 91.7 0.36 1.2E-05 31.5 5.1 38 39-77 13-50 (130)
6 1evh_A WH1 domain, protein (ME 91.5 0.31 1.1E-05 31.3 4.6 40 38-77 8-50 (112)
7 1ddw_A GLGF-domain protein hom 90.6 0.7 2.4E-05 30.1 5.7 39 38-76 8-48 (120)
8 1egx_A VAsp, vasodilator-stimu 90.6 0.3 1E-05 31.5 3.9 40 38-77 8-51 (115)
9 1qc6_A EVH1 domain from ENA/VA 90.5 0.61 2.1E-05 30.4 5.3 38 38-76 8-50 (130)
10 4hat_B RAN-specific GTPase-act 87.3 1.2 4.2E-05 29.6 5.2 39 38-77 27-65 (140)
11 2y8g_A Ranbp3-B, RAN-binding p 85.0 1.2 4E-05 29.4 4.1 29 39-68 20-48 (138)
12 3n7c_A ABR034WP; nuclear pore 84.8 1.1 3.9E-05 29.3 3.9 37 39-76 16-53 (130)
13 2crf_A RAN binding protein 3; 83.2 1.5 5.2E-05 29.3 4.1 29 39-68 32-60 (150)
14 3m1i_B RAN-specific GTPase-act 83.1 2.3 7.9E-05 30.0 5.2 39 38-77 78-116 (191)
15 1k5d_B RAN-specific GTPase-act 82.8 2.2 7.4E-05 30.1 4.9 38 39-77 51-90 (201)
16 1i2h_A PSD-ZIP45(homer-1C/VESL 82.1 3.1 0.00011 28.8 5.4 40 38-77 13-54 (168)
17 2jp2_A Spred-2, sprouty-relate 73.8 4.2 0.00014 26.6 3.9 30 38-67 17-48 (126)
18 1xod_A Spred1; sprouty, EVH1, 69.8 4.3 0.00015 26.1 3.2 30 38-67 8-39 (118)
19 3syx_A Sprouty-related, EVH1 d 46.0 34 0.0012 22.6 4.4 30 38-67 15-46 (130)
20 2dbc_A PDCL2, unnamed protein 39.9 60 0.0021 19.5 4.7 45 25-71 46-92 (135)
21 2ec1_A Nucleoporin 50 kDa; ran 33.5 83 0.0028 20.0 4.7 35 39-77 18-52 (125)
22 3tgv_A Heme-binding protein HU 29.4 1.1E+02 0.0037 19.2 5.0 52 26-78 2-67 (148)
23 2woz_A Kelch repeat and BTB do 28.0 29 0.00098 23.5 1.9 17 40-56 277-293 (318)
24 1mke_A WIP - N-WAsp, fusion pr 27.5 1.3E+02 0.0044 20.1 5.0 31 38-70 45-75 (152)
25 2xc8_A Gene 22 product; siphov 26.8 36 0.0012 22.5 2.1 13 57-69 108-120 (146)
26 2ifs_A N-WAsp, wiskott-aldrich 26.4 1.3E+02 0.0046 20.3 5.0 32 37-70 61-92 (169)
27 4asc_A Kelch repeat and BTB do 26.1 36 0.0012 22.9 2.1 17 40-56 267-283 (315)
28 3vii_A Beta-glucosidase; cellu 25.2 19 0.00066 28.1 0.6 33 16-48 98-132 (487)
29 3evi_A Phosducin-like protein 23.8 52 0.0018 20.1 2.4 42 25-67 39-82 (118)
30 2uvk_A YJHT; unknown function, 23.7 42 0.0014 22.9 2.1 18 41-58 86-103 (357)
31 4ha4_A Beta-galactosidase; TIM 23.6 19 0.00067 27.8 0.4 33 16-48 120-154 (489)
32 2vpj_A Kelch-like protein 12; 23.4 44 0.0015 22.1 2.1 16 41-56 269-284 (301)
33 2xn4_A Kelch-like protein 2; s 22.8 46 0.0016 22.1 2.1 17 41-57 267-283 (302)
34 1zgk_A Kelch-like ECH-associat 22.5 47 0.0016 22.3 2.1 18 40-57 230-247 (308)
35 4a3y_A Raucaffricine-O-beta-D- 22.4 28 0.00096 27.3 1.1 32 17-48 110-143 (540)
36 4dde_A 6-phospho-beta-glucosid 22.1 28 0.00094 27.1 0.9 32 17-48 103-136 (480)
37 3ptm_A Beta-glucosidase OS4BGl 20.9 30 0.001 27.1 0.9 32 17-48 122-155 (505)
38 3ii7_A Kelch-like protein 7; p 20.8 54 0.0019 21.8 2.1 17 41-57 24-40 (306)
39 2djj_A PDI, protein disulfide- 20.4 73 0.0025 18.0 2.4 28 40-68 62-91 (121)
40 3r84_A Mediator of RNA polymer 20.2 15 0.00052 22.8 -0.7 22 20-41 6-27 (86)
41 3kvp_A Uncharacterized protein 20.2 61 0.0021 19.6 2.0 17 38-54 37-53 (72)
42 3ta9_A Glycoside hydrolase fam 20.1 25 0.00086 27.2 0.3 32 17-48 98-131 (458)
No 1
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-34 Score=196.23 Aligned_cols=70 Identities=36% Similarity=0.777 Sum_probs=67.5
Q ss_pred CChHhhhhhcHHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEEecC
Q 045097 11 LDQQSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNR 80 (80)
Q Consensus 11 ~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iILNR 80 (80)
+.+++..+|||+||||+||+|++||++|+||+||+||+++++|+|+|+||+||||+|+..|+|+|+||||
T Consensus 8 m~~~~~~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR 77 (134)
T 2lyd_A 8 MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNR 77 (134)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEET
T ss_pred cChHHHHhhhHHHHhhhCcHHHHHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcC
Confidence 3567788999999999999999999999999999999999999999999999999999999999999998
No 2
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=99.97 E-value=1.9e-33 Score=190.52 Aligned_cols=66 Identities=35% Similarity=0.663 Sum_probs=58.0
Q ss_pred HhhhhhcHHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEEecC
Q 045097 14 QSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVVMNR 80 (80)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iILNR 80 (80)
..++++||+||||+||+|++||++|+||+||+||+++++|+|+||||+||||+|+ .|+|+|+||||
T Consensus 6 ~~r~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~-~P~~~~iVlNR 71 (127)
T 2qkl_A 6 ILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ-RARVGYVILNR 71 (127)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEEEEEEECC------CCEEEEEEEEEEEEET-TCCEEEEEEES
T ss_pred HHHHHhHHHHHhhhCchHHHHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEcc-CCceEEEEEcC
Confidence 3568999999999999999999999999999999999999999999999999999 99999999998
No 3
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=99.93 E-value=1.4e-27 Score=174.80 Aligned_cols=56 Identities=27% Similarity=0.624 Sum_probs=51.3
Q ss_pred hhhhcHHHHhhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCC
Q 045097 16 TKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQP 71 (80)
Q Consensus 16 ~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P 71 (80)
+++|||+||+|+||.|++||++|+||+||+||.++++|+|+++||+||||.|+..|
T Consensus 19 RkaLNlnVL~RyDP~IkqIL~~t~hasvYkfd~~~~eW~K~~~eG~LfIy~Rd~~p 74 (231)
T 1q67_A 19 RKALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQ 74 (231)
T ss_dssp ---CCHHHHHHHCTTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECCC-
T ss_pred HHHhHHHHHHhhChhHHHHHhcCCeEEEEEecCCCCceEecCcEEEEEEEEecCCC
Confidence 68999999999999999999999999999999999999999999999999998877
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=92.13 E-value=0.29 Score=32.09 Aligned_cols=38 Identities=11% Similarity=0.614 Sum_probs=29.6
Q ss_pred CcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
..|-||.||.++++|...|+ |+|.|.+....-++++++
T Consensus 27 ~raKL~~~~~~~~~WkerG~-G~lkil~~k~~~k~Rlvm 64 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGI-GNVKILRHKTSGKIRLLM 64 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEE-EEEEEEEESSSCCCEEEE
T ss_pred EEEEEEEEcccCCCcccCcE-EEEEEEEECCCCeEEEEE
Confidence 46899999988899999885 889988765545666654
No 5
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=91.66 E-value=0.36 Score=31.54 Aligned_cols=38 Identities=21% Similarity=0.670 Sum_probs=29.6
Q ss_pred CcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
..|-||.||.++++|...|+ |.|.|.+....-++++++
T Consensus 13 ~raKL~~~~~~~~~WkERG~-G~lkil~~k~~~k~Rlvm 50 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGL-GNLKILKNEVNGKLRMLM 50 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEETTSSCEEEEE
T ss_pred EEEEEEEEcCCCCCcccCcE-EEEEEEEcCCCCeEEEEE
Confidence 45889999988899998886 789988776555666553
No 6
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=91.48 E-value=0.31 Score=31.25 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCcEEEEeeeCCCCCeeeCCce-ee--EEEEEeCCCCceeEEE
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVE-GS--LFVVKRNTQPRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vE-Gt--LFv~~R~~~P~~~~iI 77 (80)
++-|.||.+|+.++.|.+.+-. |. +-+|+....-.|.|+.
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~ 50 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVG 50 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEE
Confidence 4568999999999999999964 43 7888887666677654
No 7
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=90.63 E-value=0.7 Score=30.11 Aligned_cols=39 Identities=5% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCcEEEEeeeCCCC-CeeeCC-ceeeEEEEEeCCCCceeEE
Q 045097 38 AAHVTFYEFNIDLS-QWSRKD-VEGSLFVVKRNTQPRFQFV 76 (80)
Q Consensus 38 as~v~lY~f~~~t~-~W~K~~-vEGtLFv~~R~~~P~~~~i 76 (80)
++-|.||.+|+.++ .|.+.+ -.|.+-+|.......|+|+
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRIv 48 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRII 48 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEEE
Confidence 35688999999885 999944 3367778887777677775
No 8
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=90.62 E-value=0.3 Score=31.52 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCcEEEEeeeCCCCCeeeCCc--ee--eEEEEEeCCCCceeEEE
Q 045097 38 AAHVTFYEFNIDLSQWSRKDV--EG--SLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~v--EG--tLFv~~R~~~P~~~~iI 77 (80)
++-|.||.+|+.++.|.+.+. +| ++-+|+....-.|.|+.
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~ 51 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVG 51 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEE
Confidence 456889999999999999886 68 48888887766676654
No 9
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=90.52 E-value=0.61 Score=30.41 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=24.1
Q ss_pred CCcEEEEeeeCCCCCeeeCCceee-----EEEEEeCCCCceeEE
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGS-----LFVVKRNTQPRFQFV 76 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGt-----LFv~~R~~~P~~~~i 76 (80)
+.-|.||.||+++++|.+.+ .|. +-|+.-...-.|+|+
T Consensus 8 ~~~A~V~~~d~~~~~W~~~g-~G~~~l~~V~i~~~~~~~~~Riv 50 (130)
T 1qc6_A 8 QARASVMVYDDTSKKWVPIK-PGQQGFSRINIYHNTASSTFRVV 50 (130)
T ss_dssp EEEEEEEEEETTTTEEEECC------CEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEEECCCCCceeECC-CCceeeeEEEEEecCCCcEEEEE
Confidence 35688999999999999998 663 333444443345544
No 10
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=87.34 E-value=1.2 Score=29.61 Aligned_cols=39 Identities=13% Similarity=0.465 Sum_probs=29.4
Q ss_pred CCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
+..|-||.|+.++++|...|+ |.|.|.+....-++++++
T Consensus 27 ~~raKLf~f~~~~~~WkerG~-G~lkilk~k~~~k~Rllm 65 (140)
T 4hat_B 27 KVRAKLFRFDKDAKEWKERGT-GDCKFLKNKKTNKVRILM 65 (140)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEETTTCCEEEEE
T ss_pred EEeEEEEEEcCCCCCcccccE-EEEEEEEcCCCCeEEEEE
Confidence 446889999988899998875 888887765544666543
No 11
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=85.00 E-value=1.2 Score=29.43 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=24.7
Q ss_pred CcEEEEeeeCCCCCeeeCCceeeEEEEEeC
Q 045097 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~vEGtLFv~~R~ 68 (80)
..|-||.|+.++++|...|+ |+|.|....
T Consensus 20 ~raKL~~f~~~~~~WkERG~-G~lkil~~k 48 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGR-GLLRLNDMA 48 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEE
T ss_pred EEeEEEEEecCCCCchhceE-EEEEEEEec
Confidence 46889999998899999886 889888764
No 12
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=84.79 E-value=1.1 Score=29.31 Aligned_cols=37 Identities=14% Similarity=0.407 Sum_probs=24.8
Q ss_pred CcEEEEeeeCCCCCeeeCCceeeEEEEEeCC-CCceeEE
Q 045097 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT-QPRFQFV 76 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~-~P~~~~i 76 (80)
..|-||.||.++++|...|+ |+|-|.+... .-+++++
T Consensus 16 ~raKL~~f~~~~~~WkerG~-G~lkil~~k~~~~k~Rll 53 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGV-GELKLLRKKDDKGKVRVL 53 (130)
T ss_dssp EEEEEEEECC---CEEEEEE-EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEeCCCCCchhcce-EEEEEEEecCCCCEEEEE
Confidence 45889999998899998774 8888876552 3355554
No 13
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=83.22 E-value=1.5 Score=29.33 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=23.9
Q ss_pred CcEEEEeeeCCCCCeeeCCceeeEEEEEeC
Q 045097 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~vEGtLFv~~R~ 68 (80)
..|-||.||.++++|...|+ |+|.|.+..
T Consensus 32 ~raKL~~fd~~~~~WkERG~-G~lkil~~k 60 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGR-GLLRLNDMA 60 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEE
T ss_pred EEeEEEEEcCCCCCccccee-EEEEEEecc
Confidence 46899999998999998774 888888754
No 14
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=83.13 E-value=2.3 Score=29.96 Aligned_cols=39 Identities=13% Similarity=0.476 Sum_probs=30.0
Q ss_pred CCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
...|-||.|+.++++|.-.|+ |+|-|.+....-+++|++
T Consensus 78 ~~RaKLf~f~~~~~~WKERGv-G~lkilk~ket~k~RllM 116 (191)
T 3m1i_B 78 KVRAKLFRFDADAKEWKERGT-GDCKFLKNKKTNKVRILM 116 (191)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEETTTCCEEEEE
T ss_pred EEeeEEEEEecCCCCccceeE-EEEEEEEcCCCCeEEEEE
Confidence 457999999988899998876 888887765544666553
No 15
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=82.83 E-value=2.2 Score=30.13 Aligned_cols=38 Identities=16% Similarity=0.544 Sum_probs=29.1
Q ss_pred CcEEEEee--eCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 39 AHVTFYEF--NIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 39 s~v~lY~f--~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
..|-||.| |..+++|.-.|+ |+|.|.+....-+++|++
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGv-G~lkIlk~k~t~k~RlvM 90 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGT-GDVKLLKHKEKGAIRLLM 90 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEE-EEEEEEECSSSCCEEEEE
T ss_pred EeeeEEEecccccCCCccccce-EEEEEEEcCCCCcEEEEE
Confidence 46899999 777899998886 888888765544666654
No 16
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=82.07 E-value=3.1 Score=28.76 Aligned_cols=40 Identities=5% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCcEEEEeeeCCCC-CeeeCC-ceeeEEEEEeCCCCceeEEE
Q 045097 38 AAHVTFYEFNIDLS-QWSRKD-VEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 38 as~v~lY~f~~~t~-~W~K~~-vEGtLFv~~R~~~P~~~~iI 77 (80)
++-|.||.+|+.++ .|.+.+ -.|.+-||.......|+|+=
T Consensus 13 s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyRIvg 54 (168)
T 1i2h_A 13 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIIS 54 (168)
T ss_dssp EEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEEEEE
Confidence 45689999999876 999954 23566677776666677753
No 17
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.78 E-value=4.2 Score=26.60 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCcEEEEeeeCCCCCeeeCCceee--EEEEEe
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGS--LFVVKR 67 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGt--LFv~~R 67 (80)
++-|.||.+|+.+..|.+.+--|. .-||..
T Consensus 17 ~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~ 48 (126)
T 2jp2_A 17 RVKAVVMTRDDSSGGWFPQEGGGISRVGVCKV 48 (126)
T ss_dssp EEEEEEEEECTTSSSSEECSCCSCEEEEEECC
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEe
Confidence 567899999999999999886442 445544
No 18
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=69.80 E-value=4.3 Score=26.09 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=22.6
Q ss_pred CCcEEEEeeeCCCCCeeeCCcee--eEEEEEe
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEG--SLFVVKR 67 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEG--tLFv~~R 67 (80)
++-|.||.+|+.+..|.+.+--| .+-||..
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~ 39 (118)
T 1xod_A 8 RVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKT 39 (118)
T ss_dssp EEEEEEEEECSSSSCEEEGGGCCCEEEEEECC
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEe
Confidence 45689999999999999987534 2456654
No 19
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=45.99 E-value=34 Score=22.61 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=23.6
Q ss_pred CCcEEEEeeeCCCCCeeeCCcee--eEEEEEe
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEG--SLFVVKR 67 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEG--tLFv~~R 67 (80)
..-|.|..+|+.++.|.-.+=.| ..+||..
T Consensus 15 ~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~ 46 (130)
T 3syx_A 15 RVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKV 46 (130)
T ss_dssp EEEEEEEEECSSSSCEEESSSSCCEEEEEEEE
T ss_pred EEEEEeeeEcCCCCceEeCCCCCCceEEEEec
Confidence 45689999999999999987444 4667875
No 20
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.89 E-value=60 Score=19.54 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=29.9
Q ss_pred hhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCcee--eEEEEEeCCCC
Q 045097 25 QRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG--SLFVVKRNTQP 71 (80)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEG--tLFv~~R~~~P 71 (80)
++..|.+.++...-..+.++..|.+... ++-+|.| |+++|+ +...
T Consensus 46 ~~~~p~l~~la~~~~~v~~~~vd~~~~~-~~~~i~~~Pt~~~~~-~G~~ 92 (135)
T 2dbc_A 46 LVVNQHLSVLARKFPETKFVKAIVNSCI-EHYHDNCLPTIFVYK-NGQI 92 (135)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECCSSSC-SSCCSSCCSEEEEES-SSSC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEhhcCc-ccCCCCCCCEEEEEE-CCEE
Confidence 4556677777766677888998876544 6667777 566664 4433
No 21
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.51 E-value=83 Score=19.95 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=24.3
Q ss_pred CcEEEEeeeCCCCCeeeCCceeeEEEEEeCCCCceeEEE
Q 045097 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFVV 77 (80)
Q Consensus 39 s~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~P~~~~iI 77 (80)
.-|-||.|+. ++|.-.|+ |+|.|-+.. .-+++|++
T Consensus 18 ~raKLf~~~~--~~WkERGv-G~lki~~~k-~~k~Rllm 52 (125)
T 2ec1_A 18 KKCKLFYKKD--NEFKEKGI-GTLHLKPTA-NQKTQLLV 52 (125)
T ss_dssp EEEEEEEECS--SSEEEEEE-EEEEEEECS-SSSEEEEE
T ss_pred EeeEEEEecC--CCcccccE-EEEEeeecC-CCcEEEEE
Confidence 4678999964 79998886 888885543 23555554
No 22
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=29.38 E-value=1.1e+02 Score=19.24 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=34.6
Q ss_pred hhCcchHHHhhhCCcEEEEeeeCCCC-----CeeeCCceeeEEEEEeCC---------CCceeEEEe
Q 045097 26 RIDPFIEEILITAAHVTFYEFNIDLS-----QWSRKDVEGSLFVVKRNT---------QPRFQFVVM 78 (80)
Q Consensus 26 R~Dp~I~~Il~~as~v~lY~f~~~t~-----~W~K~~vEGtLFv~~R~~---------~P~~~~iIL 78 (80)
|+.|.|+++|.....++|=+-+.+.. -|=-.+ +|.++++.... .|+.++.|.
T Consensus 2 ~L~~ei~~fl~~~~~~~LaT~~~~G~P~~s~v~~~~~-~~~~~~~~s~~~~~~~nl~~~prvsl~v~ 67 (148)
T 3tgv_A 2 RLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQN-QEGYFVLISHIARHARNLEVNPQVSIMMI 67 (148)
T ss_dssp CHHHHHHHHHHHCCEEEEEEECTTCCEEEEEEEEEEE-TTEEEEEEETTSHHHHHHHHSCEEEEEEE
T ss_pred CchHHHHHHHhhCCEEEEEEECCCCCEEEEEEEEEEE-CCEEEEEECCccHHHHHHHhCCCeEEEEe
Confidence 56788999999999999988876422 121222 35566665432 788888775
No 23
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=27.98 E-value=29 Score=23.49 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=14.7
Q ss_pred cEEEEeeeCCCCCeeeC
Q 045097 40 HVTFYEFNIDLSQWSRK 56 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~ 56 (80)
.-.+|.||.++++|++.
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 45689999999999986
No 24
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=27.50 E-value=1.3e+02 Score=20.10 Aligned_cols=31 Identities=35% Similarity=0.584 Sum_probs=24.7
Q ss_pred CCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCC
Q 045097 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ 70 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~ 70 (80)
++-|-||.-++. ++|.+. ..|.+-+++-...
T Consensus 45 taVaqLy~a~~~-~~W~~~-~~Gal~~VkD~~~ 75 (152)
T 1mke_A 45 SAVVQLYAADRN-CMWSKK-CSGVACLVKDNPQ 75 (152)
T ss_dssp EEEEEEEEEETT-TEEEEE-EEEEEEEEEETTT
T ss_pred EeeEEEEEECCC-CceEec-CceEEEEEEECCC
Confidence 556779999875 799996 7999988887653
No 25
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=26.81 E-value=36 Score=22.53 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=10.6
Q ss_pred CceeeEEEEEeCC
Q 045097 57 DVEGSLFVVKRNT 69 (80)
Q Consensus 57 ~vEGtLFv~~R~~ 69 (80)
--||++|+|+...
T Consensus 108 tregtiflyeked 120 (146)
T 2xc8_A 108 TREGTIFLYEKED 120 (146)
T ss_dssp CEEEEEEEEEECC
T ss_pred ccceeEEEEeccc
Confidence 4699999999764
No 26
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=26.40 E-value=1.3e+02 Score=20.32 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=25.1
Q ss_pred hCCcEEEEeeeCCCCCeeeCCceeeEEEEEeCCC
Q 045097 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ 70 (80)
Q Consensus 37 ~as~v~lY~f~~~t~~W~K~~vEGtLFv~~R~~~ 70 (80)
.++-|-||.-++. ++|.+. ..|.+-+++-...
T Consensus 61 ataVaqLy~a~~~-~~W~~~-~~Gal~~vkD~~~ 92 (169)
T 2ifs_A 61 SSAVVQLYAADRN-CMWSKK-CSGVACLVKDNPQ 92 (169)
T ss_dssp EEEEEEEEEEETT-TEEEEE-EEEEEEEEEETTT
T ss_pred EEEEEEEEEECCC-CeeEec-CceEEEEEEECCC
Confidence 3556779999875 799996 7999998887654
No 27
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=26.05 E-value=36 Score=22.93 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=14.6
Q ss_pred cEEEEeeeCCCCCeeeC
Q 045097 40 HVTFYEFNIDLSQWSRK 56 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~ 56 (80)
...+|.||+++++|++.
T Consensus 267 ~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 267 LNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEETTTTEEEEE
T ss_pred cCcEEEecCCCChhhhh
Confidence 35689999999999986
No 28
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*
Probab=25.20 E-value=19 Score=28.10 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=29.5
Q ss_pred hhhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 16 TKLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 16 ~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
..+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 98 ~g~~N~~Gl~fY~~lId~Ll~~GIeP~VTL~H~Dl 132 (487)
T 3vii_A 98 DNIVNQDGIDYYNNLINELLANGIEPMVTMYHWDL 132 (487)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCCcCHHHHHHHHHHHHHHHHCCCEEEEEEecCCC
Confidence 3578999999999999999986 79999999995
No 29
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=23.77 E-value=52 Score=20.07 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=29.8
Q ss_pred hhhCcchHHHhhhCCcEEEEeeeCCCCCeeeCCcee--eEEEEEe
Q 045097 25 QRIDPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG--SLFVVKR 67 (80)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~t~~W~K~~vEG--tLFv~~R 67 (80)
+.++|.++++...-+.+.+++-|.+.. -++-+|.+ ||.+|+.
T Consensus 39 ~~~~p~l~~la~~~~~v~f~kvd~d~~-~~~~~v~~~PT~~~fk~ 82 (118)
T 3evi_A 39 LLVNQHLSLLARKFPETKFVKAIVNSC-IQHYHDNCLPTIFVYKN 82 (118)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEGGGT-STTCCGGGCSEEEEEET
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEhHHh-HHHCCCCCCCEEEEEEC
Confidence 556788888887777888999987654 25567777 5666653
No 30
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=23.74 E-value=42 Score=22.93 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=14.9
Q ss_pred EEEEeeeCCCCCeeeCCc
Q 045097 41 VTFYEFNIDLSQWSRKDV 58 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~v 58 (80)
..+|.||..+++|++...
T Consensus 86 ~~v~~yd~~~~~W~~~~~ 103 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMS 103 (357)
T ss_dssp CCEEEEETTTTEEEECSC
T ss_pred ccEEEEeCCCCcEEECCC
Confidence 458999999999998653
No 31
>4ha4_A Beta-galactosidase; TIM barrel, beta-glycosidase, hydrolase; HET: GOL PG6; 1.37A {Acidilobus saccharovorans} PDB: 4ha3_A* 1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 4eam_A 4ean_A
Probab=23.65 E-value=19 Score=27.78 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=29.7
Q ss_pred hhhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 16 TKLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 16 ~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
..+.|-.-|+-||--|.+++.. -+.|+||+||.
T Consensus 120 ~~~~N~~Gl~fY~~lid~Ll~~GIeP~VTL~H~Dl 154 (489)
T 4ha4_A 120 DKMANRDAINHYREMFSDLRSRGITFILNLYHWPL 154 (489)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHTTCEEEEESCSSCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCeeeEeecCCCc
Confidence 3578999999999999999986 89999999995
No 32
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=23.42 E-value=44 Score=22.13 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=14.3
Q ss_pred EEEEeeeCCCCCeeeC
Q 045097 41 VTFYEFNIDLSQWSRK 56 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~ 56 (80)
..+|.||.++++|++.
T Consensus 269 ~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 269 SSIECYDPIIDSWEVV 284 (301)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred ccEEEEcCCCCeEEEc
Confidence 6789999999999985
No 33
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=22.80 E-value=46 Score=22.14 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.3
Q ss_pred EEEEeeeCCCCCeeeCC
Q 045097 41 VTFYEFNIDLSQWSRKD 57 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~ 57 (80)
..++.||+++++|++..
T Consensus 267 ~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 267 ASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp CCEEEEETTTTEEEECS
T ss_pred ccEEEEcCCCCeEEECC
Confidence 45899999999999864
No 34
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=22.45 E-value=47 Score=22.32 Aligned_cols=18 Identities=6% Similarity=0.329 Sum_probs=14.7
Q ss_pred cEEEEeeeCCCCCeeeCC
Q 045097 40 HVTFYEFNIDLSQWSRKD 57 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~~ 57 (80)
.-.+|.||.++++|++..
T Consensus 230 ~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 230 LNSVERYDVETETWTFVA 247 (308)
T ss_dssp CCCEEEEETTTTEEEECC
T ss_pred cceEEEEeCCCCcEEECC
Confidence 356899999999999853
No 35
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A {Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Probab=22.38 E-value=28 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=29.4
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.+.|-..|+-||--|.+++.. -+.|+||+||.
T Consensus 110 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~dl 143 (540)
T 4a3y_A 110 GGVNKEGINYYNNLIDGLLANGIKPFVTLFHWDV 143 (540)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCccceeccCCCC
Confidence 578999999999999999987 79999999995
No 36
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans} PDB: 3pn8_A* 4f66_A* 4gpn_A* 4f79_A*
Probab=22.13 E-value=28 Score=27.11 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=28.9
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.+.|-.-|+-+|.-|.+++.. -+.|+||+||.
T Consensus 103 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~Dl 136 (480)
T 4dde_A 103 AEPNEAGLQFYDDLFDECLKYGIEPVVTLSHFEL 136 (480)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCcceEEeeCCCC
Confidence 478999999999999999986 89999999995
No 37
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase, hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A* 3ptq_A*
Probab=20.87 E-value=30 Score=27.13 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=29.0
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 122 g~vN~~Gl~fY~~lid~l~~~GIeP~VTL~HwDl 155 (505)
T 3ptm_A 122 GGVNKEGIKYYNNLINELLSKGVQPFITLFHWDS 155 (505)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 478999999999999999986 89999999995
No 38
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=20.80 E-value=54 Score=21.81 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.1
Q ss_pred EEEEeeeCCCCCeeeCC
Q 045097 41 VTFYEFNIDLSQWSRKD 57 (80)
Q Consensus 41 v~lY~f~~~t~~W~K~~ 57 (80)
..+|.||+.+++|++..
T Consensus 24 ~~~~~~d~~~~~W~~~~ 40 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIR 40 (306)
T ss_dssp TSEEEEETTTTEEEECC
T ss_pred ceEEEecCCCCCEecCC
Confidence 45789999999999863
No 39
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=20.36 E-value=73 Score=18.03 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=20.9
Q ss_pred cEEEEeeeCCCCCeeeCCcee--eEEEEEeC
Q 045097 40 HVTFYEFNIDLSQWSRKDVEG--SLFVVKRN 68 (80)
Q Consensus 40 ~v~lY~f~~~t~~W~K~~vEG--tLFv~~R~ 68 (80)
.+.++..|.+.+...+ ++.| +++++...
T Consensus 62 ~v~~~~vd~~~~~~~~-~v~~~Pt~~~~~~~ 91 (121)
T 2djj_A 62 RVVIAKVDATANDVPD-EIQGFPTIKLYPAG 91 (121)
T ss_dssp SSEEEEEETTTSCCSS-CCSSSSEEEEECSS
T ss_pred ceEEEEEECccccccc-ccCcCCeEEEEeCc
Confidence 5788899987777666 8887 67777654
No 40
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=20.17 E-value=15 Score=22.82 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred cHHHHhhhCcchHHHhhhCCcE
Q 045097 20 NLTVLQRIDPFIEEILITAAHV 41 (80)
Q Consensus 20 NL~vL~R~Dp~I~~Il~~as~v 41 (80)
+|..|-.+|..|.++|..|+.+
T Consensus 6 RL~sL~~ID~~i~sLL~~as~~ 27 (86)
T 3r84_A 6 RLKSLNDIETQLCSMLQEASQV 27 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998765
No 41
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=20.16 E-value=61 Score=19.60 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.1
Q ss_pred CCcEEEEeeeCCCCCee
Q 045097 38 AAHVTFYEFNIDLSQWS 54 (80)
Q Consensus 38 as~v~lY~f~~~t~~W~ 54 (80)
..++-+|+||+.+|+=+
T Consensus 37 ~g~iKIykyde~tNeI~ 53 (72)
T 3kvp_A 37 DGYIKIYEYNESRNEVK 53 (72)
T ss_dssp TTEEEEEEEETTTTEEE
T ss_pred CCEEEEEEeCCCCCeEE
Confidence 45678999999888643
No 42
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}
Probab=20.06 E-value=25 Score=27.16 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=28.8
Q ss_pred hhhcHHHHhhhCcchHHHhhh--CCcEEEEeeeC
Q 045097 17 KLLNLTVLQRIDPFIEEILIT--AAHVTFYEFNI 48 (80)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (80)
.+.|-.-|+.+|.-|.+++.. .+.|+||+||.
T Consensus 98 g~~N~~Gl~fY~~lid~l~~~GIeP~vTL~H~dl 131 (458)
T 3ta9_A 98 GRVNQKGLDFYKRLVDNLLKANIRPMITLYHWDL 131 (458)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 478999999999999999985 89999999995
Done!