BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045099
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 31/109 (28%)
Query: 101 LDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSI 160
LD+S N G + G++ L ILNLG+N I
Sbjct: 637 LDMSYNMLSGYIPKEI----GSMPYLFILNLGHN------------------------DI 668
Query: 161 EGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
GS + + +LR L +LDLS N + GR +S+L L +DLSNN
Sbjct: 669 SGSIPDE-VGDLRGLNILDLSSNKLDGRIPQ--AMSALTMLTEIDLSNN 714
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXX 155
EL SL LS N+ G S S G+L +L+ L L N L
Sbjct: 418 SELVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
N + G GL+N L + LS N +TG +G L NL L LSNN
Sbjct: 474 DFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNN 524
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 31/109 (28%)
Query: 101 LDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXXCDNSI 160
LD+S N G + G++ L ILNLG+N I
Sbjct: 634 LDMSYNMLSGYIPKEI----GSMPYLFILNLGHN------------------------DI 665
Query: 161 EGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
GS + + +LR L +LDLS N + GR +S+L L +DLSNN
Sbjct: 666 SGSIPDE-VGDLRGLNILDLSSNKLDGRIPQ--AMSALTMLTEIDLSNN 711
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDXXXXXXXXXXXXXXXXX 155
EL SL LS N+ G S S G+L +L+ L L N L
Sbjct: 415 SELVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 156 CDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209
N + G GL+N L + LS N +TG +G L NL L LSNN
Sbjct: 471 DFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNN 521
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 24/75 (32%)
Query: 160 IEGSRTKQGLANLRY----LQVLDLSGNPITGRFIARLG--------------------L 195
+ S KQ LA+LR ++ LDLSGNP++ A L L
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 196 SSLRNLKRLDLSNNY 210
SL L+ LDL+NNY
Sbjct: 77 ESLSTLRTLDLNNNY 91
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 24/75 (32%)
Query: 160 IEGSRTKQGLANLRY----LQVLDLSGNPITGRFIARLG--------------------L 195
+ S KQ LA+LR ++ LDLSGNP++ A L L
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 196 SSLRNLKRLDLSNNY 210
SL L+ LDL+NNY
Sbjct: 77 ESLSTLRTLDLNNNY 91
>pdb|2C0K|A Chain A, The Structure Of Hemoglobin From The Botfly Gasterophilus
Intestinalis
pdb|2C0K|B Chain B, The Structure Of Hemoglobin From The Botfly Gasterophilus
Intestinalis
Length = 151
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 56 ATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSEN 106
A ++TE + LK Y P+N L+ FP F+E+ DL EN
Sbjct: 15 VVAAKMTEAGVEMLKRYFKKYPHN---------LNHFPWFKEIPFDDLPEN 56
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 34 ILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLK--HYKSSNPNNSSDGVIILDLSL 91
I+ + DG++ +W+ + C+ + E SLN L+ Y+ + LS+
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRK----------MFDRLSV 380
Query: 92 FPPFQELQSLDLSENWF 108
FPP + ++ LS WF
Sbjct: 381 FPPSAHIPTILLSLIWF 397
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPSQ 217
L L LQ LDLS N I L L +L +L+ L+LS+N SQ
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQ 391
>pdb|3UCP|A Chain A, Outer Membrane Endecaheme Cytochrome Unda From Shewanella
Sp. Hrcr-6
pdb|3UFH|A Chain A, Crystal Structure Of Unda With Iron Citrate Bound
pdb|3UFK|A Chain A, Crystal Structure Of Unda Complexed With Iron
Nitrilotriacetate
Length = 874
Score = 27.3 bits (59), Expect = 7.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 158 NSIEGSRTKQGLANLRYLQVLDLSGNPIT 186
NS++ + + LAN Y D +GNPIT
Sbjct: 119 NSVKAADPARSLANYSYTDGKDSAGNPIT 147
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 18/75 (24%)
Query: 80 SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYN------------------SSG 121
S + + LD+S+F QEL+ LDLS N +S N G
Sbjct: 53 SHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFG 112
Query: 122 NLKQLKILNLGNNRL 136
N+ QLK L L L
Sbjct: 113 NMSQLKFLGLSTTHL 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,169,599
Number of Sequences: 62578
Number of extensions: 224623
Number of successful extensions: 869
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 55
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)