Query 045099
Match_columns 217
No_of_seqs 225 out of 2640
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.1E-23 2.4E-28 194.5 16.3 195 8-214 27-251 (968)
2 PLN03150 hypothetical protein; 99.7 2E-16 4.3E-21 139.6 14.0 157 5-190 367-532 (623)
3 PLN00113 leucine-rich repeat r 99.6 1.1E-15 2.4E-20 141.7 10.2 115 92-213 160-274 (968)
4 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.4E-21 116.3 -4.9 136 58-217 32-191 (264)
5 KOG4194 Membrane glycoprotein 99.4 4E-14 8.6E-19 119.7 2.6 96 119-217 240-335 (873)
6 PLN03150 hypothetical protein; 99.4 7.2E-13 1.6E-17 117.2 9.8 112 97-215 419-532 (623)
7 KOG0617 Ras suppressor protein 99.3 9.5E-15 2.1E-19 106.3 -5.7 100 89-198 95-195 (264)
8 KOG0472 Leucine-rich repeat pr 99.3 2E-13 4.3E-18 110.9 1.0 145 60-216 389-544 (565)
9 KOG4194 Membrane glycoprotein 99.3 1.7E-12 3.6E-17 110.0 4.9 122 86-215 92-213 (873)
10 PF14580 LRR_9: Leucine-rich r 99.3 3.2E-12 6.8E-17 95.0 5.3 125 60-206 20-147 (175)
11 KOG0444 Cytoskeletal regulator 99.2 4E-13 8.7E-18 114.8 -2.6 150 59-217 7-168 (1255)
12 KOG4237 Extracellular matrix p 99.2 2E-11 4.4E-16 99.1 5.3 90 119-211 269-358 (498)
13 PF14580 LRR_9: Leucine-rich r 99.2 3.7E-11 8.1E-16 89.3 5.1 113 92-214 15-128 (175)
14 KOG0444 Cytoskeletal regulator 99.1 2.6E-12 5.6E-17 109.9 -2.0 146 60-215 104-284 (1255)
15 KOG1259 Nischarin, modulator o 99.1 9.2E-12 2E-16 98.2 -0.7 114 92-216 303-416 (490)
16 KOG0472 Leucine-rich repeat pr 99.1 1.3E-12 2.8E-17 106.3 -6.7 111 95-216 182-292 (565)
17 KOG0618 Serine/threonine phosp 99.0 4E-11 8.6E-16 106.2 0.4 112 89-210 376-487 (1081)
18 PF13855 LRR_8: Leucine rich r 99.0 2.4E-10 5.3E-15 70.3 3.2 60 149-211 2-61 (61)
19 cd00116 LRR_RI Leucine-rich re 99.0 2.7E-10 5.9E-15 92.8 4.2 115 96-212 137-263 (319)
20 PF13855 LRR_8: Leucine rich r 99.0 2.5E-10 5.4E-15 70.3 2.8 59 125-184 2-60 (61)
21 PRK15370 E3 ubiquitin-protein 99.0 4.5E-08 9.7E-13 88.1 16.9 102 96-216 199-300 (754)
22 cd00116 LRR_RI Leucine-rich re 99.0 5.8E-10 1.3E-14 90.8 4.3 121 92-214 161-293 (319)
23 PF08263 LRRNT_2: Leucine rich 98.9 1.4E-09 3.1E-14 61.8 4.0 43 8-55 1-43 (43)
24 PRK15387 E3 ubiquitin-protein 98.9 5.2E-09 1.1E-13 93.9 7.6 107 97-215 343-461 (788)
25 PLN03210 Resistant to P. syrin 98.8 2.8E-08 6E-13 94.0 11.7 114 91-216 629-742 (1153)
26 PRK15370 E3 ubiquitin-protein 98.8 1E-08 2.2E-13 92.2 7.3 103 96-215 220-341 (754)
27 PRK15387 E3 ubiquitin-protein 98.8 2.7E-08 5.8E-13 89.4 9.7 17 95-111 241-257 (788)
28 KOG0618 Serine/threonine phosp 98.8 3.3E-10 7.1E-15 100.5 -2.5 110 95-214 358-467 (1081)
29 KOG4237 Extracellular matrix p 98.8 2.9E-10 6.4E-15 92.4 -2.9 132 60-211 68-200 (498)
30 KOG0532 Leucine-rich repeat (L 98.7 4.8E-10 1E-14 95.0 -3.4 114 91-216 116-251 (722)
31 PLN03210 Resistant to P. syrin 98.7 2.9E-07 6.3E-12 87.2 12.2 107 94-210 609-715 (1153)
32 KOG1259 Nischarin, modulator o 98.6 5.7E-09 1.2E-13 82.6 0.0 107 94-213 282-388 (490)
33 KOG0532 Leucine-rich repeat (L 98.5 1.3E-08 2.8E-13 86.5 -0.0 88 91-187 161-248 (722)
34 COG4886 Leucine-rich repeat (L 98.5 5.3E-08 1.2E-12 81.9 3.0 112 92-214 159-270 (394)
35 PF12799 LRR_4: Leucine Rich r 98.3 3.6E-07 7.8E-12 52.0 2.6 37 149-187 2-38 (44)
36 KOG1644 U2-associated snRNP A' 98.3 1E-06 2.3E-11 66.0 5.7 107 96-208 42-149 (233)
37 KOG3207 Beta-tubulin folding c 98.3 7.8E-08 1.7E-12 79.4 -0.8 119 92-215 168-317 (505)
38 KOG3207 Beta-tubulin folding c 98.3 1.5E-07 3.2E-12 77.8 0.7 114 94-212 220-339 (505)
39 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.3E-13 87.7 -4.8 103 97-212 165-267 (1096)
40 COG4886 Leucine-rich repeat (L 98.3 3.7E-07 7.9E-12 76.9 2.8 104 95-209 115-219 (394)
41 KOG1859 Leucine-rich repeat pr 98.3 1.1E-08 2.4E-13 89.2 -6.6 109 92-212 183-292 (1096)
42 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.3E-11 48.9 3.9 37 124-161 1-37 (44)
43 KOG4658 Apoptotic ATPase [Sign 98.2 7.6E-07 1.7E-11 81.6 3.1 107 95-209 544-652 (889)
44 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.4E-12 66.4 -2.0 87 93-186 50-136 (177)
45 KOG0531 Protein phosphatase 1, 98.2 5.6E-07 1.2E-11 76.3 0.8 109 92-213 91-200 (414)
46 KOG0531 Protein phosphatase 1, 98.1 6.4E-07 1.4E-11 76.0 0.5 111 93-216 69-179 (414)
47 KOG1909 Ran GTPase-activating 98.1 1.3E-06 2.9E-11 70.4 1.8 90 121-212 154-254 (382)
48 KOG4579 Leucine-rich repeat (L 98.1 2.6E-07 5.6E-12 65.3 -2.0 113 58-191 52-164 (177)
49 KOG2739 Leucine-rich acidic nu 97.9 5.5E-06 1.2E-10 64.4 1.6 85 95-187 42-130 (260)
50 KOG4658 Apoptotic ATPase [Sign 97.9 7.3E-06 1.6E-10 75.3 2.3 113 87-207 562-676 (889)
51 KOG1909 Ran GTPase-activating 97.7 4E-05 8.7E-10 62.0 3.8 114 96-211 185-310 (382)
52 KOG1644 U2-associated snRNP A' 97.6 7.6E-05 1.6E-09 56.2 4.3 104 61-183 44-150 (233)
53 KOG3665 ZYG-1-like serine/thre 97.5 0.00014 3E-09 65.4 5.2 112 95-211 147-262 (699)
54 KOG2982 Uncharacterized conser 97.5 4.5E-05 9.8E-10 60.8 1.8 87 123-211 70-158 (418)
55 COG5238 RNA1 Ran GTPase-activa 97.5 0.00018 3.8E-09 56.8 4.6 121 91-212 87-227 (388)
56 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.4E-09 56.5 2.6 90 88-181 57-151 (260)
57 KOG2123 Uncharacterized conser 97.3 8.7E-06 1.9E-10 64.2 -4.4 83 91-179 36-123 (388)
58 PF13306 LRR_5: Leucine rich r 97.2 0.0014 3.1E-08 45.8 6.8 107 90-208 6-112 (129)
59 KOG2123 Uncharacterized conser 97.2 1.6E-05 3.4E-10 62.8 -3.9 103 95-205 18-123 (388)
60 KOG3665 ZYG-1-like serine/thre 97.2 0.00025 5.3E-09 63.8 2.9 110 96-213 122-234 (699)
61 KOG2120 SCF ubiquitin ligase, 97.1 2.8E-05 6.1E-10 61.9 -3.5 111 97-210 186-324 (419)
62 KOG2982 Uncharacterized conser 97.1 0.00015 3.2E-09 57.9 0.4 86 96-183 71-156 (418)
63 PF13306 LRR_5: Leucine rich r 96.9 0.0036 7.8E-08 43.8 5.9 105 86-202 25-129 (129)
64 PRK15386 type III secretion pr 96.7 0.0063 1.4E-07 51.3 7.2 94 97-209 73-187 (426)
65 COG5238 RNA1 Ran GTPase-activa 96.5 0.0057 1.2E-07 48.5 5.2 142 59-211 30-197 (388)
66 KOG2120 SCF ubiquitin ligase, 96.2 0.00068 1.5E-08 54.3 -1.6 22 93-114 207-228 (419)
67 PF13504 LRR_7: Leucine rich r 96.1 0.0033 7.2E-08 27.8 1.1 16 200-215 2-17 (17)
68 PRK15386 type III secretion pr 95.9 0.054 1.2E-06 45.8 8.3 74 96-184 94-188 (426)
69 PF00560 LRR_1: Leucine Rich R 95.8 0.003 6.5E-08 30.0 0.4 12 150-161 2-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0065 1.4E-07 28.8 1.1 21 174-197 1-21 (22)
71 smart00369 LRR_TYP Leucine-ric 94.8 0.025 5.5E-07 27.8 1.9 18 199-216 2-19 (26)
72 smart00370 LRR Leucine-rich re 94.8 0.025 5.5E-07 27.8 1.9 18 199-216 2-19 (26)
73 KOG1947 Leucine rich repeat pr 93.6 0.049 1.1E-06 46.7 2.4 62 146-209 241-305 (482)
74 KOG0473 Leucine-rich repeat pr 93.3 0.00087 1.9E-08 51.9 -7.7 89 91-187 37-125 (326)
75 smart00370 LRR Leucine-rich re 93.3 0.1 2.2E-06 25.5 2.3 13 149-161 3-15 (26)
76 smart00369 LRR_TYP Leucine-ric 93.3 0.1 2.2E-06 25.5 2.3 13 149-161 3-15 (26)
77 smart00364 LRR_BAC Leucine-ric 92.1 0.11 2.4E-06 25.6 1.5 18 199-216 2-19 (26)
78 PF13516 LRR_6: Leucine Rich r 91.9 0.062 1.3E-06 25.8 0.4 13 125-137 3-15 (24)
79 KOG1947 Leucine rich repeat pr 91.8 0.1 2.3E-06 44.6 2.1 112 93-206 211-328 (482)
80 KOG0473 Leucine-rich repeat pr 91.5 0.0029 6.4E-08 49.0 -6.8 88 119-212 37-124 (326)
81 KOG3864 Uncharacterized conser 90.8 0.045 9.8E-07 41.5 -1.0 81 97-182 102-185 (221)
82 KOG3864 Uncharacterized conser 90.4 0.057 1.2E-06 41.0 -0.8 34 123-156 150-184 (221)
83 smart00365 LRR_SD22 Leucine-ri 85.8 0.72 1.6E-05 22.8 1.7 16 199-214 2-17 (26)
84 KOG3763 mRNA export factor TAP 85.5 0.66 1.4E-05 40.5 2.5 64 94-161 216-283 (585)
85 smart00368 LRR_RI Leucine rich 81.8 1.5 3.4E-05 21.8 2.0 13 125-137 3-15 (28)
86 KOG3763 mRNA export factor TAP 78.9 1.3 2.8E-05 38.7 1.9 82 121-205 215-307 (585)
87 KOG4308 LRR-containing protein 77.7 0.071 1.5E-06 46.2 -6.1 116 95-212 171-303 (478)
88 KOG4308 LRR-containing protein 72.3 0.22 4.8E-06 43.2 -4.5 95 93-187 201-304 (478)
89 TIGR00864 PCC polycystin catio 56.3 8.8 0.00019 40.2 2.5 32 130-161 1-32 (2740)
90 smart00367 LRR_CC Leucine-rich 42.3 20 0.00043 17.1 1.4 16 172-187 1-17 (26)
91 TIGR00864 PCC polycystin catio 36.9 24 0.00053 37.3 2.2 24 86-109 9-32 (2740)
92 PF08093 Toxin_23: Magi 5 toxi 35.7 36 0.00079 17.2 1.7 17 35-51 4-20 (30)
93 KOG4242 Predicted myosin-I-bin 23.8 91 0.002 27.4 3.2 19 96-114 165-183 (553)
94 TIGR03271 methan_mark_5 putati 22.6 72 0.0016 22.6 1.9 20 1-20 92-111 (142)
95 KOG4341 F-box protein containi 21.8 53 0.0012 28.3 1.4 13 95-107 319-331 (483)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.1e-23 Score=194.54 Aligned_cols=195 Identities=27% Similarity=0.356 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEcCCCCcEEEEecCCccccCCCCCCCC-CCCcee
Q 045099 8 LEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNNS-SDGVII 86 (217)
Q Consensus 8 ~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~-~~~~~~ 86 (217)
++.|+.||++||+.+.++. ..+.+|.. ..+||.|.|+.|+. .++|+.++++++.+.+..++... ...+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~--~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPL------KYLSNWNS--SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCc------ccCCCCCC--CCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCE
Confidence 6789999999999997654 56789975 56899999999985 56999999999988876543211 011111
Q ss_pred -----------ecCCCCCCCCCccEEECCCCcCCCccCcc------------------hhhcccCCCCCCEEEccCCCCC
Q 045099 87 -----------LDLSLFPPFQELQSLDLSENWFGGVSESK------------------AYNSSGNLKQLKILNLGNNRLN 137 (217)
Q Consensus 87 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------~~~~~~~l~~L~~L~L~~n~l~ 137 (217)
++...+..+.+|++|++++|.+++.+|.. ....++.+++|++|++++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 11112334555666666655555544320 0014455555666666666555
Q ss_pred ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+.+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|. .++.+++|++|++++|++++.
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCCh--hHhcCCCCCEEECcCceeccc
Confidence 55555555566666666666665555554 555666666666666666655555 556666666666666665543
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=2e-16 Score=139.64 Aligned_cols=157 Identities=25% Similarity=0.281 Sum_probs=118.2
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCc----cccceEEcCC--C--CcEEEEecCCccccCCCC
Q 045099 5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCC----DWERLKCNAT--A--GRVTELSLNRLKHYKSSN 76 (217)
Q Consensus 5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c----~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~ 76 (217)
..+.+.|.+||+++|..+..+. ..+|.. .+|+ .|.|+.|... . ..|+.++|+++.+.|.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i- 434 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--------RFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI- 434 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--------cCCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC-
Confidence 4567789999999999885432 247964 2332 7999999521 1 25888888888887543
Q ss_pred CCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEcc
Q 045099 77 PNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILC 156 (217)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 156 (217)
+..+..+++|+.|+|++|.+.+.+|. .+..+++|+.|+|++|.+++.+|..++.+++|+.|+++
T Consensus 435 ------------p~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 435 ------------PNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred ------------CHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 23466788888999999988888887 78888889999999999888888888888889999999
Q ss_pred CccccCccchHhhcC-CCCCCEEEccCCcCccccc
Q 045099 157 DNSIEGSRTKQGLAN-LRYLQVLDLSGNPITGRFI 190 (217)
Q Consensus 157 ~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~p 190 (217)
+|+++|.+|. .+.. ..++..+++.+|......|
T Consensus 499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPA-ALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCCh-HHhhccccCceEEecCCccccCCC
Confidence 8888888887 4544 3466778888876444333
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=1.1e-15 Score=141.66 Aligned_cols=115 Identities=32% Similarity=0.356 Sum_probs=65.9
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|++++|.+.+..|. .+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|. .+..
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~ 234 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGG 234 (968)
T ss_pred HhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhc
Confidence 44556666666666666655554 555566666666666666555555555566666666666655555554 4555
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
+++|++|++++|.+++.+|. .++++++|+.|++++|++++
T Consensus 235 l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred CCCCCEEECcCceeccccCh--hHhCCCCCCEEECcCCeeec
Confidence 55555555555555555554 45555555555555555443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-16 Score=116.28 Aligned_cols=136 Identities=26% Similarity=0.354 Sum_probs=88.7
Q ss_pred CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099 58 AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137 (217)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (217)
.+.++.+.++.+.+. +-++.+..+.+|+.|++++|+++..++ .+..+++|+.|+++-|++.
T Consensus 32 ~s~ITrLtLSHNKl~--------------~vppnia~l~nlevln~~nnqie~lp~-----~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT--------------VVPPNIAELKNLEVLNLSNNQIEELPT-----SISSLPKLRILNVGMNRLN 92 (264)
T ss_pred hhhhhhhhcccCcee--------------ecCCcHHHhhhhhhhhcccchhhhcCh-----hhhhchhhhheecchhhhh
Confidence 357888999998876 223345667777777777777766554 5666777777777777665
Q ss_pred ccchHHhhcCCCCCEEEccCccccC------------------------ccchHhhcCCCCCCEEEccCCcCcccccccc
Q 045099 138 DSILSYLNTLTSLTTLILCDNSIEG------------------------SRTKQGLANLRYLQVLDLSGNPITGRFIARL 193 (217)
Q Consensus 138 ~~~p~~~~~l~~L~~L~l~~n~l~~------------------------~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 193 (217)
..|..|+.++.|+.||+.+|++.. .+|+ .++++++|+.|.+..|.+.. +|.
T Consensus 93 -~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~-lpk-- 167 (264)
T KOG0617|consen 93 -ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLS-LPK-- 167 (264)
T ss_pred -cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhh-CcH--
Confidence 566666777777777776666542 2333 45566666666666666553 555
Q ss_pred cccCCCCCCEEeccCCCCCCCCCC
Q 045099 194 GLSSLRNLKRLDLSNNYGFTTPSQ 217 (217)
Q Consensus 194 ~l~~l~~L~~L~l~~N~l~~~p~~ 217 (217)
.++.+.+|++|++.+|.++-+|||
T Consensus 168 eig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChh
Confidence 666666666666666666666664
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.44 E-value=4e-14 Score=119.66 Aligned_cols=96 Identities=28% Similarity=0.223 Sum_probs=63.4
Q ss_pred cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198 (217)
Q Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l 198 (217)
.|.++++|+.|.|.+|.++......|..+.++++|+|+.|+++ .+-.+++-+++.|++|+|+.|.+....++ .|.-.
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d--~Wsft 316 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHID--SWSFT 316 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecc--hhhhc
Confidence 3444444444444444444333334445666777777777776 34444666778888888888888877777 66777
Q ss_pred CCCCEEeccCCCCCCCCCC
Q 045099 199 RNLKRLDLSNNYGFTTPSQ 217 (217)
Q Consensus 199 ~~L~~L~l~~N~l~~~p~~ 217 (217)
++|+.|+|++|+++.++++
T Consensus 317 qkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ccceeEeccccccccCChh
Confidence 8889999999988888763
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=7.2e-13 Score=117.17 Aligned_cols=112 Identities=29% Similarity=0.426 Sum_probs=98.9
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ 176 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 176 (217)
.++.|+|++|.+++.+|. .+..+++|+.|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|. .+..+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence 377899999999999988 889999999999999999999999999999999999999999998887 799999999
Q ss_pred EEEccCCcCcccccccccccCC-CCCCEEeccCCC-CCCCC
Q 045099 177 VLDLSGNPITGRFIARLGLSSL-RNLKRLDLSNNY-GFTTP 215 (217)
Q Consensus 177 ~L~L~~n~l~~~~p~~~~l~~l-~~L~~L~l~~N~-l~~~p 215 (217)
+|+|++|.++|.+|. .+... .++..+++.+|. +.+.|
T Consensus 494 ~L~Ls~N~l~g~iP~--~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 494 ILNLNGNSLSGRVPA--ALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EEECcCCcccccCCh--HHhhccccCceEEecCCccccCCC
Confidence 999999999999998 66553 467789999886 44443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=9.5e-15 Score=106.26 Aligned_cols=100 Identities=29% Similarity=0.352 Sum_probs=83.6
Q ss_pred CCCCCCCCCccEEECCCCcCCCc-cCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchH
Q 045099 89 LSLFPPFQELQSLDLSENWFGGV-SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQ 167 (217)
Q Consensus 89 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 167 (217)
+..|+.++.|+.||+.+|++... .|. .|-.+..|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+- .+|.
T Consensus 95 prgfgs~p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk- 167 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK- 167 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-
Confidence 55788899999999998888764 344 6667888888999999988 78899999999999999999987 5786
Q ss_pred hhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099 168 GLANLRYLQVLDLSGNPITGRFIARLGLSSL 198 (217)
Q Consensus 168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l 198 (217)
.++.+..|+.|++.+|+++- +|. .++++
T Consensus 168 eig~lt~lrelhiqgnrl~v-lpp--el~~l 195 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTV-LPP--ELANL 195 (264)
T ss_pred HHHHHHHHHHHhcccceeee-cCh--hhhhh
Confidence 89999999999999999995 555 55544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=2e-13 Score=110.94 Aligned_cols=145 Identities=30% Similarity=0.382 Sum_probs=116.1
Q ss_pred cEEEEecCCccccCCCCCCCC-----------CCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099 60 RVTELSLNRLKHYKSSNPNNS-----------SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI 128 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~ 128 (217)
-|+.++++++.+..- +.... .++.....+..++.+++|..|++++|.+...+. +++.+..|+.
T Consensus 389 ~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-----e~~~lv~Lq~ 462 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE-----EMGSLVRLQT 462 (565)
T ss_pred ceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch-----hhhhhhhhhe
Confidence 489999999987632 21100 012222234457789999999999999887654 7788889999
Q ss_pred EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099 129 LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208 (217)
Q Consensus 129 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~ 208 (217)
|+++.|+|. .+|..+-.+..+|.+-.+.|++. .+++..+.++.+|..|||.+|.+.. +|+ .++++.+|++|.+.+
T Consensus 463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq~-IPp--~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDLQQ-IPP--ILGNMTNLRHLELDG 537 (565)
T ss_pred ecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCchhh-CCh--hhccccceeEEEecC
Confidence 999999998 78988888888888888889997 6777679999999999999999996 777 899999999999999
Q ss_pred CCCCCCCC
Q 045099 209 NYGFTTPS 216 (217)
Q Consensus 209 N~l~~~p~ 216 (217)
|.|+ .|+
T Consensus 538 Npfr-~Pr 544 (565)
T KOG0472|consen 538 NPFR-QPR 544 (565)
T ss_pred CccC-CCH
Confidence 9998 554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.31 E-value=1.7e-12 Score=110.02 Aligned_cols=122 Identities=26% Similarity=0.300 Sum_probs=69.4
Q ss_pred eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099 86 ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT 165 (217)
Q Consensus 86 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 165 (217)
.++...|.++++|+++++..|.++..+. ......+|+.|+|.+|.|+..-.+.++.++.|+.|||+.|.|+ .+|
T Consensus 92 ~id~~~f~nl~nLq~v~l~~N~Lt~IP~-----f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~ 165 (873)
T KOG4194|consen 92 HIDFEFFYNLPNLQEVNLNKNELTRIPR-----FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIP 165 (873)
T ss_pred cCcHHHHhcCCcceeeeeccchhhhccc-----ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-ccc
Confidence 4455566677777777777777765432 2222334666666666666555556666666666666666665 344
Q ss_pred hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
...+..-.++++|+|++|+++..-.. .|..+.+|..|.|+.|+++.+|
T Consensus 166 ~~sfp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred CCCCCCCCCceEEeeccccccccccc--cccccchheeeecccCcccccC
Confidence 43444445566666666666543333 4444555555555555555554
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=3.2e-12 Score=95.03 Aligned_cols=125 Identities=30% Similarity=0.381 Sum_probs=52.0
Q ss_pred cEEEEecCCccccCCCCCCCCCCCceeecCCCCC-CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFP-PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
+...++|+++.+. .+ +.++ .+.+|+.|++++|.++... .+..+++|++|++++|+++.
T Consensus 20 ~~~~L~L~~n~I~-------------~I--e~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 20 KLRELNLRGNQIS-------------TI--ENLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS---S
T ss_pred ccccccccccccc-------------cc--cchhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCc
Confidence 5677888888876 11 2344 4788999999999998754 56789999999999999985
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccc--cccccCCCCCCEEec
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIA--RLGLSSLRNLKRLDL 206 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~l~~l~~L~~L~l 206 (217)
..+.....+++|+.|++++|+|...-....+..+++|+.|++.+|+++.. +. ...+..+|+|+.||-
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 43332346899999999999997432223577889999999999998853 32 115677899998885
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=4e-13 Score=114.76 Aligned_cols=150 Identities=24% Similarity=0.236 Sum_probs=90.5
Q ss_pred CcEEEEecCCccccCCCCCCCCC--CC--ceeec-------CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSS--DG--VIILD-------LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK 127 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~--~~--~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~ 127 (217)
.-|.++|+++|.++|...|+... .. ...++ +..++.+.+|++|.++.|++..... .+..+++|+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG-----ELs~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG-----ELSDLPRLR 81 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh-----hhccchhhH
Confidence 35788999999998766554211 01 11111 2234456667777777777665433 556666666
Q ss_pred EEEccCCCCC-ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099 128 ILNLGNNRLN-DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206 (217)
Q Consensus 128 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l 206 (217)
.+.+..|++. .-+|..+..+..|..|||++|+++ +.|. .+.+.+++-.|+|++|++.. ||.. .+-++..|-.|||
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~-~LE~AKn~iVLNLS~N~Iet-IPn~-lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT-NLEYAKNSIVLNLSYNNIET-IPNS-LFINLTDLLFLDL 157 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcch-hhhhhcCcEEEEcccCcccc-CCch-HHHhhHhHhhhcc
Confidence 6666666664 235566666666666777777666 4565 56666666666666666664 4432 4455666666666
Q ss_pred cCCCCCCCCCC
Q 045099 207 SNNYGFTTPSQ 217 (217)
Q Consensus 207 ~~N~l~~~p~~ 217 (217)
++|++..+||+
T Consensus 158 S~NrLe~LPPQ 168 (1255)
T KOG0444|consen 158 SNNRLEMLPPQ 168 (1255)
T ss_pred ccchhhhcCHH
Confidence 66666666653
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=2e-11 Score=99.09 Aligned_cols=90 Identities=27% Similarity=0.248 Sum_probs=72.2
Q ss_pred cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198 (217)
Q Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l 198 (217)
.|..+++|++|+|++|++++.-+..|.++.++++|.|..|++. .+....|..+..|+.|+|.+|+++..-|. .|..+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~--aF~~~ 345 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPG--AFQTL 345 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecc--ccccc
Confidence 3667888888888888888777778888888888888888887 45555788888888888888888877776 77778
Q ss_pred CCCCEEeccCCCC
Q 045099 199 RNLKRLDLSNNYG 211 (217)
Q Consensus 199 ~~L~~L~l~~N~l 211 (217)
.+|..|+|-.|.|
T Consensus 346 ~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 346 FSLSTLNLLSNPF 358 (498)
T ss_pred ceeeeeehccCcc
Confidence 8888888887765
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3.7e-11 Score=89.31 Aligned_cols=113 Identities=32% Similarity=0.347 Sum_probs=43.5
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhccc-CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSG-NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
+.+...+++|+|.+|.|+... .+. .+.+|+.|++++|.++. + +.+..++.|+.|++++|+++. +......
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred ccccccccccccccccccccc------chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHH
Confidence 445567899999999998753 344 57899999999999984 3 357789999999999999984 5542234
Q ss_pred CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
.+++|+.|++++|++... .+-..+..+++|+.|++.+|.++..
T Consensus 86 ~lp~L~~L~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp H-TT--EEE-TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred hCCcCCEEECcCCcCCCh-HHhHHHHcCCCcceeeccCCcccch
Confidence 689999999999999863 2111567899999999999988754
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.15 E-value=2.6e-12 Score=109.90 Aligned_cols=146 Identities=32% Similarity=0.344 Sum_probs=84.7
Q ss_pred cEEEEecCCccccCCCCC----------CCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEE
Q 045099 60 RVTELSLNRLKHYKSSNP----------NNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKIL 129 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L 129 (217)
.++.+||+.|.+...... +.+.+.+..++.+.|.++.-|-+|||++|++...+| .+..+..|++|
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-----Q~RRL~~LqtL 178 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-----QIRRLSMLQTL 178 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH-----HHHHHhhhhhh
Confidence 567788888877532111 233344445555566667777778888888777666 45566666666
Q ss_pred EccCCCCCcc-------------------------chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCc
Q 045099 130 NLGNNRLNDS-------------------------ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184 (217)
Q Consensus 130 ~L~~n~l~~~-------------------------~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 184 (217)
.|++|.+... +|..+..+.+|..+|++.|.+. .+|. .+-++++|+.|+|++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCc
Confidence 6666655322 3333444445555555555554 3444 45556666666666666
Q ss_pred CcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 185 ITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 185 l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
++. +.. ..+.+.+|+.|+++.|+++.+|
T Consensus 257 ite-L~~--~~~~W~~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 257 ITE-LNM--TEGEWENLETLNLSRNQLTVLP 284 (1255)
T ss_pred eee-eec--cHHHHhhhhhhccccchhccch
Confidence 653 222 3445556666666666666665
No 15
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=9.2e-12 Score=98.15 Aligned_cols=114 Identities=31% Similarity=0.324 Sum_probs=84.1
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
..-++.++.|+++.|.+.... .++.+++|+.|||++|.++. +..+-..+.+.+.|.++.|.+.. +. .+..
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~-LS--GL~K 372 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET-LS--GLRK 372 (490)
T ss_pred hhhccceeEEeccccceeeeh------hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh-hh--hhHh
Confidence 344577777888888776543 56778888888888888762 33333456677788888888763 32 4778
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+.+|.+||+++|++....... .++++|.|+++.|.+|.+.++|.
T Consensus 373 LYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhheeccccccchhhHHHhc-ccccccHHHHHhhcCCCccccch
Confidence 889999999999988532211 68999999999999999998864
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.07 E-value=1.3e-12 Score=106.25 Aligned_cols=111 Identities=31% Similarity=0.395 Sum_probs=67.4
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 174 (217)
++.|++||...|-++..+| .++.+.+|.-|++..|++. .+| .|.++..|.++.++.|.+. .+|......+.+
T Consensus 182 m~~L~~ld~~~N~L~tlP~-----~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~ 253 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPP-----ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS 253 (565)
T ss_pred HHHHHhcccchhhhhcCCh-----hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc
Confidence 5666666666666655444 5666666666666666665 334 4555555555666556555 355434446666
Q ss_pred CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+.+|||..|+++. .|+ .+.-+++|.+||+++|.++++|.
T Consensus 254 l~vLDLRdNklke-~Pd--e~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 254 LLVLDLRDNKLKE-VPD--EICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred ceeeecccccccc-Cch--HHHHhhhhhhhcccCCccccCCc
Confidence 6666666666663 555 55566666666666666666664
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.04 E-value=4e-11 Score=106.21 Aligned_cols=112 Identities=34% Similarity=0.394 Sum_probs=92.0
Q ss_pred CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099 89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG 168 (217)
Q Consensus 89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 168 (217)
.+.+..+.+|+.|+|++|++...+.. .+.++..|+.|+|++|+++ .+|..+..+..|++|...+|++. .+| .
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP--e 447 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP--E 447 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech--h
Confidence 34567889999999999999876655 7888999999999999998 68888999999999999999997 566 4
Q ss_pred hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCC
Q 045099 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~ 210 (217)
+..++.|+.+|++.|+++-..-. .....++|++|||++|.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~--~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLP--EALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhh--hhCCCcccceeeccCCc
Confidence 88999999999999998854322 22233899999999996
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.4e-10 Score=70.28 Aligned_cols=60 Identities=38% Similarity=0.452 Sum_probs=33.4
Q ss_pred CCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCC
Q 045099 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYG 211 (217)
Q Consensus 149 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l 211 (217)
+|++|++++|+++ .+|...|..+++|++|++++|.++...+. .+..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~--~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPD--AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETT--TTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHH--HHcCCCCCCEEeCcCCcC
Confidence 4555555555555 34444555556666666666665554444 555566666666665543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=2.7e-10 Score=92.75 Aligned_cols=115 Identities=30% Similarity=0.314 Sum_probs=60.9
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccch---Hh
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTK---QG 168 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~---~~ 168 (217)
++|+.|++++|.+++.....+...+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.... ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 56666666666666433222222444555666666666666532 222334445666666666666532111 13
Q ss_pred hcCCCCCCEEEccCCcCccccccccccc-----CCCCCCEEeccCCCCC
Q 045099 169 LANLRYLQVLDLSGNPITGRFIARLGLS-----SLRNLKRLDLSNNYGF 212 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~-----~l~~L~~L~l~~N~l~ 212 (217)
+..+++|++|++++|.+++.... .+. ..+.|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~--~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAA--ALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHH--HHHHHHhccCCCceEEEccCCCCC
Confidence 44556677777776666642111 111 1356677777766664
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=2.5e-10 Score=70.25 Aligned_cols=59 Identities=36% Similarity=0.479 Sum_probs=28.2
Q ss_pred CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCc
Q 045099 125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184 (217)
Q Consensus 125 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 184 (217)
+|++|++++|+++...+..|..+++|++|++++|.++ .+++..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence 3444555555554333334444555555555555554 2333345555555555555554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.96 E-value=4.5e-08 Score=88.08 Aligned_cols=102 Identities=27% Similarity=0.312 Sum_probs=71.0
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
+.|+.|++++|.++..+. .+ .++|++|++++|.++ .+|..+. .+|+.|++++|+++ .+|. .+. .+|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~-----~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~-~l~--s~L 264 (754)
T PRK15370 199 EQITTLILDNNELKSLPE-----NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPE-RLP--SAL 264 (754)
T ss_pred cCCcEEEecCCCCCcCCh-----hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCCh-hHh--CCC
Confidence 357788888888876543 22 247888888888887 4565443 46888888888887 5665 332 478
Q ss_pred CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+.|++++|+++. +|. .+. ++|+.|++++|+|+++|.
T Consensus 265 ~~L~Ls~N~L~~-LP~--~l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 265 QSLDLFHNKISC-LPE--NLP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred CEEECcCCccCc-ccc--ccC--CCCcEEECCCCccccCcc
Confidence 888888888874 565 332 478888888888877764
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=5.8e-10 Score=90.82 Aligned_cols=121 Identities=27% Similarity=0.248 Sum_probs=87.2
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhhcCCCCCEEEccCccccCccchH
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLNTLTSLTTLILCDNSIEGSRTKQ 167 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p~~ 167 (217)
+..+++|++|++++|.+++.....+...+..+++|++|++++|.+++.. ...+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 4456789999999999986433222224566789999999999997543 334566788999999999998522221
Q ss_pred hhc----CCCCCCEEEccCCcCcc----cccccccccCCCCCCEEeccCCCCCCC
Q 045099 168 GLA----NLRYLQVLDLSGNPITG----RFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 168 ~~~----~l~~L~~L~L~~n~l~~----~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
... ..+.|++|++++|.+++ .+.. .+..+++|+++++++|.++..
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAE--VLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHH--HHhcCCCccEEECCCCCCcHH
Confidence 111 24799999999999873 2333 455678999999999998753
No 23
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.93 E-value=1.4e-09 Score=61.85 Aligned_cols=43 Identities=28% Similarity=0.601 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEc
Q 045099 8 LEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCN 55 (217)
Q Consensus 8 ~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~ 55 (217)
++.|++||++||+++..++ ...+.+|......++|.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~-----~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDP-----SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC------CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhccccc-----CcccccCCCcCCCCCeeeccEEeC
Confidence 3679999999999998643 368999997433699999999995
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.88 E-value=5.2e-09 Score=93.92 Aligned_cols=107 Identities=22% Similarity=0.194 Sum_probs=67.3
Q ss_pred CccEEECCCCcCCCccCcc--h------hhccc----CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCcc
Q 045099 97 ELQSLDLSENWFGGVSESK--A------YNSSG----NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSR 164 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~--~------~~~~~----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 164 (217)
+|++|++++|+++..++.. + .+.+. ...+|+.|++++|.|++ +|.. .++|+.|++++|++++ +
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-I 417 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-L 417 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-C
Confidence 6778888888877643210 0 00000 11245666666666653 3322 2456777777777763 5
Q ss_pred chHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 165 TKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 165 p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
|. . ..+|+.|++++|+++ .+|. .+.++++|+.|+|++|+|++..
T Consensus 418 P~-l---~~~L~~L~Ls~NqLt-~LP~--sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 418 PM-L---PSGLLSLSVYRNQLT-RLPE--SLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred Cc-c---hhhhhhhhhccCccc-ccCh--HHhhccCCCeEECCCCCCCchH
Confidence 53 2 245677888888887 4777 7888999999999999998753
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.84 E-value=2.8e-08 Score=94.02 Aligned_cols=114 Identities=22% Similarity=0.139 Sum_probs=85.1
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
.+..+++|++|+++++.....+| .+..+++|++|+|++|.....+|..+..+++|+.|++++|..-..+|. .+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i- 701 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI- 701 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-
Confidence 34567888888888876555555 567788899999988776667888888888999999988754446665 23
Q ss_pred CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
++++|++|++++|.....+|. . .++|+.|++++|.+..+|+
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~--~---~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPD--I---STNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCCCCCEEeCCCCCCcccccc--c---cCCcCeeecCCCccccccc
Confidence 678888888888876655664 2 4577888888888877764
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.81 E-value=1e-08 Score=92.16 Aligned_cols=103 Identities=22% Similarity=0.278 Sum_probs=61.9
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
.+|++|++++|.++.. |. .+ ..+|+.|+|++|.+. .+|..+. .+|+.|++++|+++ .+|. .+. .+|
T Consensus 220 ~nL~~L~Ls~N~LtsL-P~----~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l~--~sL 285 (754)
T PRK15370 220 GNIKTLYANSNQLTSI-PA----TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE-NLP--EEL 285 (754)
T ss_pred cCCCEEECCCCccccC-Ch----hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc-ccC--CCC
Confidence 4788888888888754 32 22 235777777777776 4555443 35777777777776 3554 222 466
Q ss_pred CEEEccCCcCccccccccccc-------------------CCCCCCEEeccCCCCCCCC
Q 045099 176 QVLDLSGNPITGRFIARLGLS-------------------SLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 176 ~~L~L~~n~l~~~~p~~~~l~-------------------~l~~L~~L~l~~N~l~~~p 215 (217)
++|++++|+++. +|. .+. -.++|+.|++++|.++++|
T Consensus 286 ~~L~Ls~N~Lt~-LP~--~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 286 RYLSVYDNSIRT-LPA--HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLP 341 (754)
T ss_pred cEEECCCCcccc-Ccc--cchhhHHHHHhcCCccccCCccccccceeccccCCccccCC
Confidence 777777776664 332 111 1245666677777666665
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.80 E-value=2.7e-08 Score=89.39 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=12.8
Q ss_pred CCCccEEECCCCcCCCc
Q 045099 95 FQELQSLDLSENWFGGV 111 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~ 111 (217)
.++|++|++++|.++..
T Consensus 241 p~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 241 PPELRTLEVSGNQLTSL 257 (788)
T ss_pred CCCCcEEEecCCccCcc
Confidence 46788888888888765
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.80 E-value=3.3e-10 Score=100.52 Aligned_cols=110 Identities=35% Similarity=0.358 Sum_probs=94.9
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 174 (217)
++.|+.|.+.+|.++...-+ .+.++++|+.|+|++|++.......+.++..|+.|+|++|+++ .+|. .+.++..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~ 431 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGR 431 (1081)
T ss_pred hHHHHHHHHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhh
Confidence 56688899999999987766 7889999999999999998433456788999999999999998 6886 7899999
Q ss_pred CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
|++|...+|++.. +| .+..++.|+.+|++.|+++.+
T Consensus 432 L~tL~ahsN~l~~-fP---e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLS-FP---ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hHHHhhcCCceee-ch---hhhhcCcceEEecccchhhhh
Confidence 9999999999885 66 578899999999999998754
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.79 E-value=2.9e-10 Score=92.45 Aligned_cols=132 Identities=26% Similarity=0.295 Sum_probs=93.7
Q ss_pred cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccC-CCCCc
Q 045099 60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGN-NRLND 138 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~ 138 (217)
..+.|+|..|.+. .++...|..+++|+.|||+.|.|+.+.|. +|.+++.|..|-+.+ |+|+.
T Consensus 68 ~tveirLdqN~I~-------------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-------------SIPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cceEEEeccCCcc-------------cCChhhccchhhhceecccccchhhcChH----hhhhhHhhhHHHhhcCCchhh
Confidence 4556666665554 56667778888888888888888877776 777777777666554 77875
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYG 211 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l 211 (217)
..-..|.++.+|+.|.+.-|++. -++...+..++++..|.+.+|.+...-.. .+..+..++.+.+..|.+
T Consensus 131 l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccc--cccchhccchHhhhcCcc
Confidence 54556777888888888777776 45555777888888888888877753333 566677777887777763
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=4.8e-10 Score=94.99 Aligned_cols=114 Identities=29% Similarity=0.354 Sum_probs=68.2
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccC--------
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEG-------- 162 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-------- 162 (217)
.+..+..|++|+|+.|++...+. .++.+ -|+.|-+++|+++ .+|..++.+.+|..||.+.|.+..
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~-----~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPD-----GLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCCh-----hhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 44556666667777666665544 22222 2455555555554 344444444444444444444431
Q ss_pred --------------ccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 163 --------------SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 163 --------------~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
.+|+ ++. .-.|..||++.|+++. +|. .|.+++.|++|-|.+|.+.+.|.
T Consensus 189 ~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNkis~-iPv--~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKISY-LPV--DFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCceee-cch--hhhhhhhheeeeeccCCCCCChH
Confidence 2444 344 3456778888888874 677 78888888888888888887764
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.66 E-value=2.9e-07 Score=87.21 Aligned_cols=107 Identities=24% Similarity=0.247 Sum_probs=85.6
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
...+|++|++.+|.+..... .+..+++|+.|+|+++.....+|. ++.+++|+.|++++|.....+|. .+.+++
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~-----~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~ 681 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWD-----GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLN 681 (1153)
T ss_pred CccCCcEEECcCcccccccc-----ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccC
Confidence 35789999999998876433 567899999999998765445664 77889999999999876567886 788999
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEeccCCC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~ 210 (217)
+|+.|++++|.....+|. .+ ++++|+.|++++|.
T Consensus 682 ~L~~L~L~~c~~L~~Lp~--~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPT--GI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCEEeCCCCCCcCccCC--cC-CCCCCCEEeCCCCC
Confidence 999999999765556776 44 78999999999875
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=5.7e-09 Score=82.61 Aligned_cols=107 Identities=33% Similarity=0.351 Sum_probs=86.2
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
.+..|+++||+.|.|+.... +..-.|.++.|+++.|.+.. ...+..+++|+.||+++|.++ .+.. +-..+-
T Consensus 282 TWq~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVG-WHLKLG 352 (490)
T ss_pred hHhhhhhccccccchhhhhh-----hhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhh-hHhhhc
Confidence 35679999999999876543 56667899999999999973 334888999999999999998 3443 556778
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
+.+.|.|++|.+.+. . .++.+-+|..||+++|++..
T Consensus 353 NIKtL~La~N~iE~L--S--GL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--S--GLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred CEeeeehhhhhHhhh--h--hhHhhhhheeccccccchhh
Confidence 899999999988852 2 67889999999999998754
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=1.3e-08 Score=86.49 Aligned_cols=88 Identities=30% Similarity=0.371 Sum_probs=70.7
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
.++.+..|..||.+.|.+...++ .++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++ .+|. .|.
T Consensus 161 ~ig~~~tl~~ld~s~nei~slps-----ql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv-~fr 231 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPS-----QLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV-DFR 231 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchH-----HhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch-hhh
Confidence 34456667777777777766554 6778888888888888887 467777744 4889999999998 6898 899
Q ss_pred CCCCCCEEEccCCcCcc
Q 045099 171 NLRYLQVLDLSGNPITG 187 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~ 187 (217)
+|+.|++|-|.+|.++.
T Consensus 232 ~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhheeeeeccCCCCC
Confidence 99999999999999996
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=5.3e-08 Score=81.92 Aligned_cols=112 Identities=32% Similarity=0.420 Sum_probs=54.9
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|+.|+++.|.++...+ .....+.|+.|++++|++. .+|..+.....|+++.+++|.+. .++. .+..
T Consensus 159 ~~~l~~L~~L~l~~N~l~~l~~-----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~ 230 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSDLPK-----LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS-SLSN 230 (394)
T ss_pred hhccccccccccCCchhhhhhh-----hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch-hhhh
Confidence 4556666666666666665544 2225566666666666665 34444334444555555555322 1111 2333
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+.++..+.+.+|++.. ++. .++.++.++.|++++|.++.+
T Consensus 231 ~~~l~~l~l~~n~~~~-~~~--~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 231 LKNLSGLELSNNKLED-LPE--SIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cccccccccCCceeee-ccc--hhccccccceecccccccccc
Confidence 3344444444444332 122 344444555555555555444
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=3.6e-07 Score=52.03 Aligned_cols=37 Identities=41% Similarity=0.561 Sum_probs=22.7
Q ss_pred CCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc
Q 045099 149 SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG 187 (217)
Q Consensus 149 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 187 (217)
+|++|++++|+|+ .+|+ .+.++++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCC
Confidence 5666777777776 3554 46666777777777776664
No 36
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.34 E-value=1e-06 Score=66.03 Aligned_cols=107 Identities=30% Similarity=0.363 Sum_probs=81.1
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
.+...+||++|.+-... .|..++.|.+|.+++|+|+...|.--..++.|..|.+.+|.|........+..+++|
T Consensus 42 d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 45678899999887654 678899999999999999976666555678899999999998732222236788999
Q ss_pred CEEEccCCcCccccc-ccccccCCCCCCEEeccC
Q 045099 176 QVLDLSGNPITGRFI-ARLGLSSLRNLKRLDLSN 208 (217)
Q Consensus 176 ~~L~L~~n~l~~~~p-~~~~l~~l~~L~~L~l~~ 208 (217)
++|.+-+|+++..-- ..+.+..+|+|+.||++.
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 999999998885211 012567889999999764
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=7.8e-08 Score=79.41 Aligned_cols=119 Identities=24% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH-HhhcCCC---------------------
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS-YLNTLTS--------------------- 149 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~--------------------- 149 (217)
..++++|+.|+++.|.+.-....... ..+++|+.|.++.|.++-.... ....+|+
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i 244 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI 244 (505)
T ss_pred HHhcccchhcccccccccCCccccch---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh
Confidence 35667777777777766654433211 1345566666666666522221 1223344
Q ss_pred ---CCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-cccccc-----ccCCCCCCEEeccCCCCCCCC
Q 045099 150 ---LTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLG-----LSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 150 ---L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~-----l~~l~~L~~L~l~~N~l~~~p 215 (217)
|+.|||++|++...--....+.++.|+.|+++.+.+... +|+ . ...+++|++|++..|++...+
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d--~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD--VESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC--ccchhhhcccccceeeecccCcccccc
Confidence 444555555443211011244555666666665555532 222 1 245677888888888775543
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.5e-07 Score=77.85 Aligned_cols=114 Identities=29% Similarity=0.272 Sum_probs=75.4
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccc-hHHhhcCCCCCEEEccCccccCc-cchH----
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI-LSYLNTLTSLTTLILCDNSIEGS-RTKQ---- 167 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~-~p~~---- 167 (217)
.++.|+.|++..|........ ...-+..|++|+|++|.+-... -...+.++.|..|.++.+.+... +|+.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD 295 (505)
T ss_pred hCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchh
Confidence 356666666666642221111 3345778999999998875321 24567889999999999998742 2221
Q ss_pred hhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 168 GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
....+++|++|++..|++... +.--.+..+++|++|.+..|+|+
T Consensus 296 kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISENNIRDW-RSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhcccccceeeecccCccccc-cccchhhccchhhhhhccccccc
Confidence 135678999999999998652 21114556778888888888775
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=2e-08 Score=87.70 Aligned_cols=103 Identities=30% Similarity=0.358 Sum_probs=53.7
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ 176 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 176 (217)
.|.+.+.++|.+..... ++.-++.|+.|+|++|++... ..+..+++|++||+++|.++ .+|......+. |.
T Consensus 165 ~L~~a~fsyN~L~~mD~-----SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDE-----SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhhHHhHHH-----HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-he
Confidence 35555555555544322 445556666666666666532 25555666666666666665 34431222222 56
Q ss_pred EEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 177 ~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
.|++++|.++.. . .+.++.+|+.||+++|-+.
T Consensus 236 ~L~lrnN~l~tL--~--gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--R--GIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred eeeecccHHHhh--h--hHHhhhhhhccchhHhhhh
Confidence 666666655531 1 3455555666666665443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=3.7e-07 Score=76.86 Aligned_cols=104 Identities=40% Similarity=0.506 Sum_probs=54.5
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCC-CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLK-QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
++.++.|++.+|.++...+ ....+. +|+.|++++|.+. .+|..+..++.|+.|+++.|+++ .+|. .....+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~-~~~~~~ 186 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPK-LLSNLS 186 (394)
T ss_pred ccceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhh-hhhhhh
Confidence 3455666666666655544 233332 5666666666665 34444555666666666666665 3443 222455
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N 209 (217)
.|+.|++++|+++. +|. .......|+.+.+++|
T Consensus 187 ~L~~L~ls~N~i~~-l~~--~~~~~~~L~~l~~~~N 219 (394)
T COG4886 187 NLNNLDLSGNKISD-LPP--EIELLSALEELDLSNN 219 (394)
T ss_pred hhhheeccCCcccc-Cch--hhhhhhhhhhhhhcCC
Confidence 56666666666554 333 2233444555555555
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.1e-08 Score=89.20 Aligned_cols=109 Identities=32% Similarity=0.291 Sum_probs=85.6
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH-HhhcCCCCCEEEccCccccCccchHhhc
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS-YLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
+.-++.|+.|+|+.|+++... .+..+++|++|||+.|.+. .+|. ....+ +|+.|.+.+|.++. +- .+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t-L~--gie 251 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT-LR--GIE 251 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh-hh--hHH
Confidence 344688999999999998754 6788999999999999998 3443 22233 49999999999983 43 478
Q ss_pred CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
++.+|+.||++.|-+.+. ..-..++.+..|+.|.|.+|.+.
T Consensus 252 ~LksL~~LDlsyNll~~h-seL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEH-SELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcc-hhhhHHHHHHHHHHHhhcCCccc
Confidence 899999999999988863 21114567889999999999874
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=2e-06 Score=48.93 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=23.8
Q ss_pred CCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcccc
Q 045099 124 KQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIE 161 (217)
Q Consensus 124 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 161 (217)
++|++|++++|+|+ .+|+.++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 35555677777777777777776
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=7.6e-07 Score=81.55 Aligned_cols=107 Identities=27% Similarity=0.275 Sum_probs=67.3
Q ss_pred CCCccEEECCCCc--CCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099 95 FQELQSLDLSENW--FGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172 (217)
Q Consensus 95 l~~L~~L~l~~n~--l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l 172 (217)
.+.|++|-+..|. +...... .|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++ .+|. .+.++
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNL 617 (889)
T ss_pred CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHH
Confidence 3456666666664 3333322 4666777777777766655567777777777777777777776 4665 56777
Q ss_pred CCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099 173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N 209 (217)
..|.+|++..+.....+|. ....+++|++|.+...
T Consensus 618 k~L~~Lnl~~~~~l~~~~~--i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPG--ILLELQSLRVLRLPRS 652 (889)
T ss_pred Hhhheeccccccccccccc--hhhhcccccEEEeecc
Confidence 7777777776654444444 4445677777666543
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=1.6e-07 Score=66.37 Aligned_cols=87 Identities=25% Similarity=0.295 Sum_probs=60.6
Q ss_pred CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099 93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172 (217)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l 172 (217)
....+|+..++++|.+...++. .-..++.+++|++++|.++ .+|..+..++.|+.|+++.|.+. ..|. .+..+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi~~L 122 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKK----FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VIAPL 122 (177)
T ss_pred hCCceEEEEecccchhhhCCHH----Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HHHHH
Confidence 3445677778888887765553 2234567777888888887 46777778888888888888876 3454 55667
Q ss_pred CCCCEEEccCCcCc
Q 045099 173 RYLQVLDLSGNPIT 186 (217)
Q Consensus 173 ~~L~~L~L~~n~l~ 186 (217)
.++-.|+..+|.+.
T Consensus 123 ~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 123 IKLDMLDSPENARA 136 (177)
T ss_pred HhHHHhcCCCCccc
Confidence 77777777777665
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=5.6e-07 Score=76.34 Aligned_cols=109 Identities=34% Similarity=0.401 Sum_probs=70.0
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+..|+.|++.+|.+..... .+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++. +. .+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~--~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-IS--GLES 160 (414)
T ss_pred cccccceeeeeccccchhhccc-----chhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-cc--CCcc
Confidence 5566777777777777776543 256677777777777777642 234455667777777777763 33 3555
Q ss_pred CCCCCEEEccCCcCccccccccc-ccCCCCCCEEeccCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLG-LSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~-l~~l~~L~~L~l~~N~l~~ 213 (217)
+..|+.+++++|++...-+ . ...+.+++.+.+.+|.+..
T Consensus 161 l~~L~~l~l~~n~i~~ie~---~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIEN---DELSELISLEELDLGGNSIRE 200 (414)
T ss_pred chhhhcccCCcchhhhhhh---hhhhhccchHHHhccCCchhc
Confidence 6777777777777775322 1 2556667777777766543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=6.4e-07 Score=76.01 Aligned_cols=111 Identities=35% Similarity=0.474 Sum_probs=89.6
Q ss_pred CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099 93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172 (217)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l 172 (217)
..+..++.+.+..|.+..... .+..+.+|..|++.+|.|.. +...+..+++|++|++++|.|+. +. .+..+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~-----~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~-i~--~l~~l 139 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILN-----HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK-LE--GLSTL 139 (414)
T ss_pred HHhHhHHhhccchhhhhhhhc-----ccccccceeeeeccccchhh-cccchhhhhcchheecccccccc-cc--chhhc
Confidence 356777888899998877332 57889999999999999984 33337789999999999999985 43 36777
Q ss_pred CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+.|+.|++.+|.++. +. .+..+..|+.+++++|.+..+.+
T Consensus 140 ~~L~~L~l~~N~i~~-~~---~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 140 TLLKELNLSGNLISD-IS---GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred cchhhheeccCcchh-cc---CCccchhhhcccCCcchhhhhhh
Confidence 889999999999996 33 45668999999999999887654
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=1.3e-06 Score=70.36 Aligned_cols=90 Identities=26% Similarity=0.350 Sum_probs=56.4
Q ss_pred cCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCc---cchHhhcCCCCCCEEEccCCcCccc----c
Q 045099 121 GNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGS---RTKQGLANLRYLQVLDLSGNPITGR----F 189 (217)
Q Consensus 121 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~---~p~~~~~~l~~L~~L~L~~n~l~~~----~ 189 (217)
..-+.|+++...+|++... +...+...+.|+.+.++.|.|... .....+..+++|+.|||.+|-|+-. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 4455677777777776532 223445567777777777776521 1123567788888888888877731 2
Q ss_pred cccccccCCCCCCEEeccCCCCC
Q 045099 190 IARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 190 p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
.. .+..+++|+.|+++++.+.
T Consensus 234 ak--aL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 234 AK--ALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HH--Hhcccchheeecccccccc
Confidence 22 4556777888888777654
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=2.6e-07 Score=65.27 Aligned_cols=113 Identities=20% Similarity=0.190 Sum_probs=86.2
Q ss_pred CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099 58 AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137 (217)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (217)
.-+++.+++++|.+. .++......++.++.|++.+|.+...+. ++..++.|+.|+++.|.+.
T Consensus 52 ~~el~~i~ls~N~fk-------------~fp~kft~kf~t~t~lNl~~neisdvPe-----E~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-------------KFPKKFTIKFPTATTLNLANNEISDVPE-----ELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred CceEEEEecccchhh-------------hCCHHHhhccchhhhhhcchhhhhhchH-----HHhhhHHhhhcccccCccc
Confidence 357888999998876 3334445567789999999999988654 7889999999999999998
Q ss_pred ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccc
Q 045099 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIA 191 (217)
Q Consensus 138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 191 (217)
..|..+..+.+|..|+...|.+. ++|.. +-.....-..+++++.+.+.-+.
T Consensus 114 -~~p~vi~~L~~l~~Lds~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 114 -AEPRVIAPLIKLDMLDSPENARA-EIDVD-LFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred -cchHHHHHHHhHHHhcCCCCccc-cCcHH-HhccccHHHHHhcCCcccccCcc
Confidence 67887778999999999999987 67763 33333444445677777765554
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.88 E-value=5.5e-06 Score=64.41 Aligned_cols=85 Identities=27% Similarity=0.343 Sum_probs=45.4
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC--CCCccchHHhhcCCCCCEEEccCccccC--ccchHhhc
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN--RLNDSILSYLNTLTSLTTLILCDNSIEG--SRTKQGLA 170 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~ 170 (217)
+..|+.|.+.+..++... .+..+++|++|.++.| ++++.++.....+++|+++.+++|+++. .++ .+.
T Consensus 42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~ 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK 113 (260)
T ss_pred ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence 344455555555554433 3455666666666666 4444444434444666666666666652 122 144
Q ss_pred CCCCCCEEEccCCcCcc
Q 045099 171 NLRYLQVLDLSGNPITG 187 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~ 187 (217)
.+.+|..|++.+|..+.
T Consensus 114 ~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhcchhhhhcccCCccc
Confidence 45556666666665553
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.86 E-value=7.3e-06 Score=75.27 Aligned_cols=113 Identities=27% Similarity=0.302 Sum_probs=86.7
Q ss_pred ecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch
Q 045099 87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK 166 (217)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 166 (217)
+....|..++.|.+|||++|.=-+..|. .++.+-+|++|+++++.++ .+|..+..+.+|.+|++..+.....+|.
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence 3344588899999999999877777777 8999999999999999999 7999999999999999999876544544
Q ss_pred HhhcCCCCCCEEEccCCcCc--ccccccccccCCCCCCEEecc
Q 045099 167 QGLANLRYLQVLDLSGNPIT--GRFIARLGLSSLRNLKRLDLS 207 (217)
Q Consensus 167 ~~~~~l~~L~~L~L~~n~l~--~~~p~~~~l~~l~~L~~L~l~ 207 (217)
....+.+|++|.+...... ...-. .+.++.+|+.+...
T Consensus 637 -i~~~L~~Lr~L~l~~s~~~~~~~~l~--el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 637 -ILLELQSLRVLRLPRSALSNDKLLLK--ELENLEHLENLSIT 676 (889)
T ss_pred -hhhhcccccEEEeeccccccchhhHH--hhhcccchhhheee
Confidence 5667999999999765422 22222 34555566555543
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.69 E-value=4e-05 Score=62.02 Aligned_cols=114 Identities=25% Similarity=0.313 Sum_probs=55.1
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccch---Hh
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTK---QG 168 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~---~~ 168 (217)
+.|+.+.++.|.|.......++..+..+++|+.|||..|.++-. +...+..+++|+.|++++|.+...-.. ..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 44455555554444332222333455566666666666665421 122344455566666666655522111 01
Q ss_pred h-cCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEeccCCCC
Q 045099 169 L-ANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLDLSNNYG 211 (217)
Q Consensus 169 ~-~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l 211 (217)
+ ...++|+.+.+.+|.++.. +.. .+...+.|..|+|++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~--~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAA--CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHH--HHhcchhhHHhcCCcccc
Confidence 1 1245666666666665531 111 234456666666666666
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=7.6e-05 Score=56.23 Aligned_cols=104 Identities=25% Similarity=0.252 Sum_probs=76.9
Q ss_pred EEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccc
Q 045099 61 VTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI 140 (217)
Q Consensus 61 v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (217)
...+||+.+.+. ....|..++.|..|.+.+|+|+...|. --..+++|+.|.|.+|.|....
T Consensus 44 ~d~iDLtdNdl~---------------~l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 44 FDAIDLTDNDLR---------------KLDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred cceecccccchh---------------hcccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhh
Confidence 445677776655 234577889999999999999998874 3345788999999999986321
Q ss_pred -hHHhhcCCCCCEEEccCccccCc--cchHhhcCCCCCCEEEccCC
Q 045099 141 -LSYLNTLTSLTTLILCDNSIEGS--RTKQGLANLRYLQVLDLSGN 183 (217)
Q Consensus 141 -p~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~~l~~L~~L~L~~n 183 (217)
...+..+++|++|.+-+|.++.. .-...+..+++|+.||++.-
T Consensus 105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 23466789999999999988731 11124678899999998654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=0.00014 Score=65.37 Aligned_cols=112 Identities=23% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 174 (217)
+|.|+.|.+.+-.+.... +..-..++|+|..||+++.+++.. ..++.+++|+.|.+.+=.+...-.-..+.++++
T Consensus 147 LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred CcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 566666666655554321 111334566677777777666532 456666666666665544442111124556777
Q ss_pred CCEEEccCCcCcccc--cccc--cccCCCCCCEEeccCCCC
Q 045099 175 LQVLDLSGNPITGRF--IARL--GLSSLRNLKRLDLSNNYG 211 (217)
Q Consensus 175 L~~L~L~~n~l~~~~--p~~~--~l~~l~~L~~L~l~~N~l 211 (217)
|++||+|........ ...+ .-..+|+|+.||.+++.+
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 777777766544311 1000 123467777777776544
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=4.5e-05 Score=60.78 Aligned_cols=87 Identities=30% Similarity=0.316 Sum_probs=48.8
Q ss_pred CCCCCEEEccCCCCCcc--chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCC
Q 045099 123 LKQLKILNLGNNRLNDS--ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRN 200 (217)
Q Consensus 123 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~ 200 (217)
.+.++.+||.+|.|++. +-.-+..+|.|+.|+++.|.+...|.. .-....+|+.|-|.+..+...-.. ..+..+|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~-s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQST-SSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhh-hhhhcchh
Confidence 45566777777777642 222345567777777777776644332 113445667777766655432111 04456666
Q ss_pred CCEEeccCCCC
Q 045099 201 LKRLDLSNNYG 211 (217)
Q Consensus 201 L~~L~l~~N~l 211 (217)
+++|+++.|++
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 66676666643
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.47 E-value=0.00018 Score=56.80 Aligned_cols=121 Identities=27% Similarity=0.249 Sum_probs=73.8
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc----chHHh---------hcCCCCCEEEccC
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS----ILSYL---------NTLTSLTTLILCD 157 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~---------~~l~~L~~L~l~~ 157 (217)
.+..|++|+.++||+|.|....|+.+...+.+-..|.+|.+++|.+.-. +-..+ ..-|.|+.....+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4567899999999999998888876666678888999999999987522 22111 2347788888888
Q ss_pred ccccCccchH----hhcCCCCCCEEEccCCcCcccccc---cccccCCCCCCEEeccCCCCC
Q 045099 158 NSIEGSRTKQ----GLANLRYLQVLDLSGNPITGRFIA---RLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 158 n~l~~~~p~~----~~~~l~~L~~L~L~~n~l~~~~p~---~~~l~~l~~L~~L~l~~N~l~ 212 (217)
|++.. .+.. .+..-..|+.+-+..|.+.-.-.. .+.+..+.+|+.|||++|-|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 88762 2211 111113555555555554421000 002234556666666666554
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=0.00015 Score=56.48 Aligned_cols=90 Identities=31% Similarity=0.408 Sum_probs=62.9
Q ss_pred cCCCCCCCCCccEEECCCC--cCCCccCcchhhcccCCCCCCEEEccCCCCCcc-chHHhhcCCCCCEEEccCccccCcc
Q 045099 88 DLSLFPPFQELQSLDLSEN--WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS-ILSYLNTLTSLTTLILCDNSIEGSR 164 (217)
Q Consensus 88 ~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~ 164 (217)
....+..+++|+.|.++.| ++.+..+. -...+++|++|++++|++... ....+..+.+|..|++..|..+..-
T Consensus 57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 57 TLTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD 132 (260)
T ss_pred ecccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence 3455677889999999999 66655544 345669999999999999731 1123455677889999998876421
Q ss_pred --chHhhcCCCCCCEEEcc
Q 045099 165 --TKQGLANLRYLQVLDLS 181 (217)
Q Consensus 165 --p~~~~~~l~~L~~L~L~ 181 (217)
-...+.-+++|++|+-.
T Consensus 133 dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 133 DYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cHHHHHHHHhhhhcccccc
Confidence 11245667888877643
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=8.7e-06 Score=64.16 Aligned_cols=83 Identities=30% Similarity=0.302 Sum_probs=51.8
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccch-HHhhcCCCCCEEEccCccccCccch---
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSIL-SYLNTLTSLTTLILCDNSIEGSRTK--- 166 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~--- 166 (217)
....|+.|++|.|+-|.|+...| +..+++|++|+|..|.|.+... .-+.++++|+.|+|..|...|.-+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 34567777777777777776653 4567777777777777764321 2346677777777777766554332
Q ss_pred -HhhcCCCCCCEEE
Q 045099 167 -QGLANLRYLQVLD 179 (217)
Q Consensus 167 -~~~~~l~~L~~L~ 179 (217)
..+.-+++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 1244456666554
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.24 E-value=0.0014 Score=45.83 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=43.1
Q ss_pred CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099 90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169 (217)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 169 (217)
..|..+.+|+.+.+.. .+...... .|..+++|+.+.+..+ +.......+..+++++.+.+.. .+. .++...+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F 77 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAF 77 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccc
Confidence 3455555666666553 34433333 4555556666666553 4322233455555566666644 322 2333345
Q ss_pred cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~ 208 (217)
..+++|+.+.+..+ +...... .+.++ .|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~--~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSS--SFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTT--TTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchh--hhcCC-CceEEEECC
Confidence 55666666666544 3322222 44444 566665543
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=1.6e-05 Score=62.77 Aligned_cols=103 Identities=30% Similarity=0.354 Sum_probs=67.4
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 174 (217)
+.+.+.|++.++.++.+. ....++.|+.|.|+-|+|+. ...+..++.|++|.|..|.|.+.-...-+.++++
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 455667777777776643 33567888888888888874 2345677788888888888764211123567778
Q ss_pred CCEEEccCCcCcccccccc---cccCCCCCCEEe
Q 045099 175 LQVLDLSGNPITGRFIARL---GLSSLRNLKRLD 205 (217)
Q Consensus 175 L~~L~L~~n~l~~~~p~~~---~l~~l~~L~~L~ 205 (217)
|+.|.|..|...+.-+..+ .+..+|+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888887776444321 455677777765
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00025 Score=63.84 Aligned_cols=110 Identities=22% Similarity=0.305 Sum_probs=79.1
Q ss_pred CCccEEECCCCcCCCccCcchhhcc-cCCCCCCEEEccCCCCCc-cchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSS-GNLKQLKILNLGNNRLND-SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
.+|++|++++...-..... ..+ ..+|.|+.|.+.+-.+.. ..-....++++|..||+++.+++. + ..+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~---~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP---KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L--SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHH---HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c--HHHhccc
Confidence 5688899988654322211 123 358999999999877753 233445678999999999999984 4 3588999
Q ss_pred CCCEEEccCCcCcc-cccccccccCCCCCCEEeccCCCCCC
Q 045099 174 YLQVLDLSGNPITG-RFIARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 174 ~L~~L~L~~n~l~~-~~p~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
+|+.|.+.+=.+.. ..-. .+.++++|+.||+|......
T Consensus 196 nLq~L~mrnLe~e~~~~l~--~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLI--DLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred cHHHHhccCCCCCchhhHH--HHhcccCCCeeecccccccc
Confidence 99999887766653 1122 56789999999999876543
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=2.8e-05 Score=61.92 Aligned_cols=111 Identities=25% Similarity=0.208 Sum_probs=72.5
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCc-cccCccchHhhcCCCCC
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN-SIEGSRTKQGLANLRYL 175 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~l~~L 175 (217)
.|++|||++..++...-.. -+..+.+|+.|.+.++++.+.+...+..-..|+.++++.+ .++..-..-.+..++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~---iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHG---ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHH---HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 4888888888776543211 3456778888888888888888888888888888888775 35422112235566777
Q ss_pred CEEEccCCcCcccccc---------------------------cccccCCCCCCEEeccCCC
Q 045099 176 QVLDLSGNPITGRFIA---------------------------RLGLSSLRNLKRLDLSNNY 210 (217)
Q Consensus 176 ~~L~L~~n~l~~~~p~---------------------------~~~l~~l~~L~~L~l~~N~ 210 (217)
..|+++.+.++..... .....++++|.+|||++|.
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 7777776654421100 0023568889999998863
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00015 Score=57.91 Aligned_cols=86 Identities=28% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
+.++.+||.+|.|+.... ++..+.++|.|++|+++.|.+...+-..-....+|+.|.|.+..+...-....+..+|.+
T Consensus 71 ~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 445555555555544321 112334455555555555555432211112334455555555444322111233344444
Q ss_pred CEEEccCC
Q 045099 176 QVLDLSGN 183 (217)
Q Consensus 176 ~~L~L~~n 183 (217)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55544444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0036 Score=43.75 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=58.5
Q ss_pred eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099 86 ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT 165 (217)
Q Consensus 86 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 165 (217)
.+....|..+..|+.+.+..+ +...... .|..++.++.+.+.. .+.......+..+++|+.+++..+ +. .++
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~ 96 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIG 96 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEH
T ss_pred EeChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccccccccccccCcc-cc-EEc
Confidence 566777888989999999875 6665554 788888899999976 444333456677899999999776 54 455
Q ss_pred hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCC
Q 045099 166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLK 202 (217)
Q Consensus 166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~ 202 (217)
...+.++ .|+.+.+.. .++..... .+.++++|+
T Consensus 97 ~~~f~~~-~l~~i~~~~-~~~~i~~~--~F~~~~~l~ 129 (129)
T PF13306_consen 97 SSSFSNC-NLKEINIPS-NITKIEEN--AFKNCTKLK 129 (129)
T ss_dssp TTTTTT--T--EEE-TT-B-SS------GGG------
T ss_pred hhhhcCC-CceEEEECC-CccEECCc--cccccccCC
Confidence 5567777 899998875 33332233 666666653
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.74 E-value=0.0063 Score=51.33 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=51.0
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC-CCCccchHHhhcCCCCCEEEccCcccc--CccchHhhcCC-
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN-RLNDSILSYLNTLTSLTTLILCDNSIE--GSRTKQGLANL- 172 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~~l- 172 (217)
+|++|.++++.--...|. .+ .++|++|.+++| .+. .+|. +|+.|++..+... +.+|. .+..+
T Consensus 73 sLtsL~Lsnc~nLtsLP~----~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs-sLk~L~ 138 (426)
T PRK15386 73 ELTEITIENCNNLTTLPG----SI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN-GLTSLS 138 (426)
T ss_pred CCcEEEccCCCCcccCCc----hh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc-hHhhee
Confidence 588888876433233343 22 247888888877 444 3443 3566666655432 13333 22111
Q ss_pred -----------------CCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099 173 -----------------RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 173 -----------------~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N 209 (217)
++|++|++++|.... .|. .-..+|+.|+++.+
T Consensus 139 I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~----~LP~SLk~L~ls~n 187 (426)
T PRK15386 139 INSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE----KLPESLQSITLHIE 187 (426)
T ss_pred ccccccccccccccccCCcccEEEecCCCccc-Ccc----cccccCcEEEeccc
Confidence 356677776665442 232 23457777777665
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.51 E-value=0.0057 Score=48.54 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=80.2
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch-------hhcccCCCCCCEEEc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA-------YNSSGNLKQLKILNL 131 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~~~~l~~L~~L~L 131 (217)
..++.++|+||.+...... .+ ...+.+-.+|+..+++... +|...+.+ ...+.++|+|++++|
T Consensus 30 d~~~evdLSGNtigtEA~e--------~l-~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 30 DELVEVDLSGNTIGTEAME--------EL-CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred cceeEEeccCCcccHHHHH--------HH-HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 4677788888776622100 00 1123445667777766552 33322211 124567788888888
Q ss_pred cCCCCCccchHH----hhcCCCCCEEEccCccccCccchH-------------hhcCCCCCCEEEccCCcCcccccccc-
Q 045099 132 GNNRLNDSILSY----LNTLTSLTTLILCDNSIEGSRTKQ-------------GLANLRYLQVLDLSGNPITGRFIARL- 193 (217)
Q Consensus 132 ~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~~-------------~~~~l~~L~~L~L~~n~l~~~~p~~~- 193 (217)
+.|.+....|+. ++..+.|++|.+++|.+. .+... ....-|.|+.+....|++.......+
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 888887655543 445677888888888774 33221 12234678888888888764222200
Q ss_pred cccCC-CCCCEEeccCCCC
Q 045099 194 GLSSL-RNLKRLDLSNNYG 211 (217)
Q Consensus 194 ~l~~l-~~L~~L~l~~N~l 211 (217)
..... ..|+.+.+.+|-+
T Consensus 179 ~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 179 ALLESHENLKEVKIQQNGI 197 (388)
T ss_pred HHHHhhcCceeEEeeecCc
Confidence 01111 2677777777655
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.00068 Score=54.26 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=13.2
Q ss_pred CCCCCccEEECCCCcCCCccCc
Q 045099 93 PPFQELQSLDLSENWFGGVSES 114 (217)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~~~~~ 114 (217)
.++.+|+.|.+.++++...+..
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~ 228 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVN 228 (419)
T ss_pred HHHHhhhhccccccccCcHHHH
Confidence 3456666666666666655443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.06 E-value=0.0033 Score=27.83 Aligned_cols=16 Identities=56% Similarity=0.671 Sum_probs=7.9
Q ss_pred CCCEEeccCCCCCCCC
Q 045099 200 NLKRLDLSNNYGFTTP 215 (217)
Q Consensus 200 ~L~~L~l~~N~l~~~p 215 (217)
+|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666777776666654
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.90 E-value=0.054 Score=45.83 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=44.7
Q ss_pred CCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCC--ccchHHhhcC------------------CCCCEEE
Q 045099 96 QELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLN--DSILSYLNTL------------------TSLTTLI 154 (217)
Q Consensus 96 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l------------------~~L~~L~ 154 (217)
..|++|++++| .+.. .|. .|+.|++..+... +.+|..+..+ ++|++|+
T Consensus 94 ~nLe~L~Ls~Cs~L~s-LP~----------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~ 162 (426)
T PRK15386 94 EGLEKLTVCHCPEISG-LPE----------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLS 162 (426)
T ss_pred hhhhheEccCcccccc-ccc----------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEE
Confidence 47899999988 4443 332 3555555554421 2344443322 4789999
Q ss_pred ccCccccCccchHhhcCCCCCCEEEccCCc
Q 045099 155 LCDNSIEGSRTKQGLANLRYLQVLDLSGNP 184 (217)
Q Consensus 155 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 184 (217)
+++|... .+|. .+ ..+|++|.++.+.
T Consensus 163 Is~c~~i-~LP~-~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 163 LTGCSNI-ILPE-KL--PESLQSITLHIEQ 188 (426)
T ss_pred ecCCCcc-cCcc-cc--cccCcEEEecccc
Confidence 9988865 3443 22 2588999988763
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.003 Score=29.99 Aligned_cols=12 Identities=33% Similarity=0.385 Sum_probs=5.2
Q ss_pred CCEEEccCcccc
Q 045099 150 LTTLILCDNSIE 161 (217)
Q Consensus 150 L~~L~l~~n~l~ 161 (217)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0065 Score=28.80 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=15.1
Q ss_pred CCCEEEccCCcCcccccccccccC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSS 197 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~ 197 (217)
+|++|++++|+++ .+|. .+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~--~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPS--SFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGT--TTTT
T ss_pred CccEEECCCCcCE-eCCh--hhcC
Confidence 4788888888888 5776 4443
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.81 E-value=0.025 Score=27.78 Aligned_cols=18 Identities=50% Similarity=0.589 Sum_probs=12.7
Q ss_pred CCCCEEeccCCCCCCCCC
Q 045099 199 RNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 199 ~~L~~L~l~~N~l~~~p~ 216 (217)
++|+.|+|++|+++.+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 567777777777777764
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.81 E-value=0.025 Score=27.78 Aligned_cols=18 Identities=50% Similarity=0.589 Sum_probs=12.7
Q ss_pred CCCCEEeccCCCCCCCCC
Q 045099 199 RNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 199 ~~L~~L~l~~N~l~~~p~ 216 (217)
++|+.|+|++|+++.+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 567777777777777764
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.61 E-value=0.049 Score=46.71 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=28.4
Q ss_pred cCCCCCEEEccCcc-ccCccchHhhcCCCCCCEEEccCCc-Cccc-ccccccccCCCCCCEEeccCC
Q 045099 146 TLTSLTTLILCDNS-IEGSRTKQGLANLRYLQVLDLSGNP-ITGR-FIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 146 ~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~l~~l~~L~~L~l~~N 209 (217)
.+.+|+.++++.+. ++...-......+++|+.|.+.++. +++. +.. ....++.|++|+++.+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~--i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS--IAERCPSLRELDLSGC 305 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH--HHHhcCcccEEeeecC
Confidence 34556666666555 4322111111225566666655554 3432 111 2344555666666544
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.31 E-value=0.00087 Score=51.86 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=55.4
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
.+..+...+.||++.|++..... .|+.++.|..|+++.|.+. ..|..++....+..+++..|..+ ..|. .+.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~-----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGK-----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK 108 (326)
T ss_pred hhhccceeeeehhhhhHHHhhcc-----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence 34455666677777776655443 4555666667777777665 45665655556666666666665 3454 566
Q ss_pred CCCCCCEEEccCCcCcc
Q 045099 171 NLRYLQVLDLSGNPITG 187 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~ 187 (217)
..+.++++++-.|.++.
T Consensus 109 k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccCCcchhhhccCcchH
Confidence 67777777777766553
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.30 E-value=0.1 Score=25.55 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=6.5
Q ss_pred CCCEEEccCcccc
Q 045099 149 SLTTLILCDNSIE 161 (217)
Q Consensus 149 ~L~~L~l~~n~l~ 161 (217)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4455555555554
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.30 E-value=0.1 Score=25.55 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=6.5
Q ss_pred CCCEEEccCcccc
Q 045099 149 SLTTLILCDNSIE 161 (217)
Q Consensus 149 ~L~~L~l~~n~l~ 161 (217)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4455555555554
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.08 E-value=0.11 Score=25.61 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=12.7
Q ss_pred CCCCEEeccCCCCCCCCC
Q 045099 199 RNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 199 ~~L~~L~l~~N~l~~~p~ 216 (217)
++|+.|++++|+|+.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777763
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.86 E-value=0.062 Score=25.81 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=5.0
Q ss_pred CCCEEEccCCCCC
Q 045099 125 QLKILNLGNNRLN 137 (217)
Q Consensus 125 ~L~~L~L~~n~l~ 137 (217)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444444
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.81 E-value=0.1 Score=44.65 Aligned_cols=112 Identities=28% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCC-CCccchHHhhc-CCCCCEEEccCcc-ccCccchHh
Q 045099 93 PPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNR-LNDSILSYLNT-LTSLTTLILCDNS-IEGSRTKQG 168 (217)
Q Consensus 93 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~l~~n~-l~~~~p~~~ 168 (217)
..+++|+.|+++.+ ......+.........+.+|+.|++++.. +++..-..+.. ++.|+.|.+.++. +++.--...
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 45688999999873 22222221111133456889999999888 77665555544 7899999988777 664332224
Q ss_pred hcCCCCCCEEEccCCcCc-cc-ccccccccCCCCCCEEec
Q 045099 169 LANLRYLQVLDLSGNPIT-GR-FIARLGLSSLRNLKRLDL 206 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~-~~-~p~~~~l~~l~~L~~L~l 206 (217)
...++.|++|+++.+... +. +.. ....+++|+.|.+
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~--~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEA--LLKNCPNLRELKL 328 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHH--HHHhCcchhhhhh
Confidence 557888999999988754 21 222 3445777666554
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.51 E-value=0.0029 Score=49.02 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=72.1
Q ss_pred cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198 (217)
Q Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l 198 (217)
++..+...+.||++.|++.. +-..++.++.|..|+++.|.+. ..|. .+.+...++++++..|..+- .|. +++..
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~~-~p~--s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHSQ-QPK--SQKKE 110 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchhh-CCc--ccccc
Confidence 56677888999999998862 3456777888999999999997 5665 68888888999998888875 677 88999
Q ss_pred CCCCEEeccCCCCC
Q 045099 199 RNLKRLDLSNNYGF 212 (217)
Q Consensus 199 ~~L~~L~l~~N~l~ 212 (217)
++++++++-.|.|+
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 99999999888764
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=0.045 Score=41.52 Aligned_cols=81 Identities=25% Similarity=0.237 Sum_probs=54.9
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC-ccchHHhhc-CCCCCEEEccCcc-ccCccchHhhcCCC
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN-DSILSYLNT-LTSLTTLILCDNS-IEGSRTKQGLANLR 173 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~-l~~L~~L~l~~n~-l~~~~p~~~~~~l~ 173 (217)
.++.+|-++..|....-. .+..++.++.|.+.++.-- +.-...++. .++|+.|++++|. ||.. -...+..++
T Consensus 102 ~IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE----HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHH----HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhh
Confidence 467888888888776554 6778888888888877643 222333333 4789999999774 6532 223566778
Q ss_pred CCCEEEccC
Q 045099 174 YLQVLDLSG 182 (217)
Q Consensus 174 ~L~~L~L~~ 182 (217)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 888887755
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=0.057 Score=41.01 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=17.2
Q ss_pred CCCCCEEEccCC-CCCccchHHhhcCCCCCEEEcc
Q 045099 123 LKQLKILNLGNN-RLNDSILSYLNTLTSLTTLILC 156 (217)
Q Consensus 123 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~ 156 (217)
.++|+.|++++| +|+......+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 345555555533 3554444455555555555443
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.81 E-value=0.72 Score=22.75 Aligned_cols=16 Identities=44% Similarity=0.380 Sum_probs=9.4
Q ss_pred CCCCEEeccCCCCCCC
Q 045099 199 RNLKRLDLSNNYGFTT 214 (217)
Q Consensus 199 ~~L~~L~l~~N~l~~~ 214 (217)
.+|+.|+|+.|+++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.51 E-value=0.66 Score=40.49 Aligned_cols=64 Identities=30% Similarity=0.321 Sum_probs=30.5
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC--CCCccchHHhh--cCCCCCEEEccCcccc
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN--RLNDSILSYLN--TLTSLTTLILCDNSIE 161 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~--~l~~L~~L~l~~n~l~ 161 (217)
+.+.+..++|++|++...... ..--...|+|+.|+|++| .+.. ..++. +...|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~--sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDAL--SSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhh--hHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 345556666666666544311 001224556666666666 3321 11121 2234566666666654
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.81 E-value=1.5 Score=21.79 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=7.5
Q ss_pred CCCEEEccCCCCC
Q 045099 125 QLKILNLGNNRLN 137 (217)
Q Consensus 125 ~L~~L~L~~n~l~ 137 (217)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.87 E-value=1.3 Score=38.73 Aligned_cols=82 Identities=33% Similarity=0.329 Sum_probs=50.1
Q ss_pred cCCCCCCEEEccCCCCCccc--hHHhhcCCCCCEEEccCc--cccCccchHhhc--CCCCCCEEEccCCcCcccccccc-
Q 045099 121 GNLKQLKILNLGNNRLNDSI--LSYLNTLTSLTTLILCDN--SIEGSRTKQGLA--NLRYLQVLDLSGNPITGRFIARL- 193 (217)
Q Consensus 121 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~p~~~- 193 (217)
.+.+.+..++|++|++.... ..--...++|..|+|++| .+... + ++. ....|+.|-+.+|++...+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~--el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-S--ELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-h--hhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 35677888889999886321 122244688999999998 44421 1 233 33567888899998776433211
Q ss_pred ----cccCCCCCCEEe
Q 045099 194 ----GLSSLRNLKRLD 205 (217)
Q Consensus 194 ----~l~~l~~L~~L~ 205 (217)
....+|+|..||
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 112566666554
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.75 E-value=0.071 Score=46.24 Aligned_cols=116 Identities=32% Similarity=0.279 Sum_probs=54.3
Q ss_pred CCCccEEECCCCcCCCccCcchhhcc----cCCCCCCEEEccCCCCCccch----HHhhcCCC-CCEEEccCccccCccc
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSS----GNLKQLKILNLGNNRLNDSIL----SYLNTLTS-LTTLILCDNSIEGSRT 165 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~-L~~L~l~~n~l~~~~p 165 (217)
...++.++++.|.+.......+...+ ....++++|.+.++.++...- ..+...++ +..+++..|.+.+..-
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 45556666666655321111111112 234556666666666552111 12222333 4446666666542200
Q ss_pred h---HhhcCC-CCCCEEEccCCcCccc----ccccccccCCCCCCEEeccCCCCC
Q 045099 166 K---QGLANL-RYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 166 ~---~~~~~l-~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
. ..+..+ ..++++++..|.++.. +.. .+..++.++.+.+..|.+.
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~--~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE--VLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHH--HHhhhHHHHHhhcccCccc
Confidence 0 023333 4556777777766642 222 3445556677777766654
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=72.30 E-value=0.22 Score=43.23 Aligned_cols=95 Identities=32% Similarity=0.376 Sum_probs=67.3
Q ss_pred CCCCCccEEECCCCcCCCccCcchhhcccCCCC-CCEEEccCCCCCccc----hHHhhcC-CCCCEEEccCccccCccch
Q 045099 93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQ-LKILNLGNNRLNDSI----LSYLNTL-TSLTTLILCDNSIEGSRTK 166 (217)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~----p~~~~~l-~~L~~L~l~~n~l~~~~p~ 166 (217)
....++++|.+.++.++...-......+...+. +..|++.+|.+.+.. .+.+..+ ..+++++++.|.++..-..
T Consensus 201 ~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 201 SPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred cccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 457889999999999884432222224555666 778999999998542 2344455 6789999999999843221
Q ss_pred ---HhhcCCCCCCEEEccCCcCcc
Q 045099 167 ---QGLANLRYLQVLDLSGNPITG 187 (217)
Q Consensus 167 ---~~~~~l~~L~~L~L~~n~l~~ 187 (217)
..+..++.++.+.+..|.+.+
T Consensus 281 ~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 281 DLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhhhHHHHHhhcccCcccc
Confidence 245566789999999999886
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.31 E-value=8.8 Score=40.22 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.2
Q ss_pred EccCCCCCccchHHhhcCCCCCEEEccCcccc
Q 045099 130 NLGNNRLNDSILSYLNTLTSLTTLILCDNSIE 161 (217)
Q Consensus 130 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 161 (217)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889998655667888899999999998775
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.30 E-value=20 Score=17.11 Aligned_cols=16 Identities=50% Similarity=0.547 Sum_probs=10.5
Q ss_pred CCCCCEEEccCCc-Ccc
Q 045099 172 LRYLQVLDLSGNP-ITG 187 (217)
Q Consensus 172 l~~L~~L~L~~n~-l~~ 187 (217)
+++|++|++++|. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 3567777777774 554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.91 E-value=24 Score=37.28 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=12.3
Q ss_pred eecCCCCCCCCCccEEECCCCcCC
Q 045099 86 ILDLSLFPPFQELQSLDLSENWFG 109 (217)
Q Consensus 86 ~~~~~~~~~l~~L~~L~l~~n~l~ 109 (217)
.++...|..+++|+.|+|++|.+.
T Consensus 9 tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 9 TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred ccChHHhccCCCceEEEeeCCccc
Confidence 334444555555555555555443
No 92
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=35.68 E-value=36 Score=17.17 Aligned_cols=17 Identities=41% Similarity=0.997 Sum_probs=10.1
Q ss_pred cCCCcCCCCCCCccccc
Q 045099 35 LTSWVDDGISDCCDWER 51 (217)
Q Consensus 35 l~~W~~~~~~~~c~w~g 51 (217)
+..|...+..+||.|+-
T Consensus 4 l~~~~Cssdk~CCg~tp 20 (30)
T PF08093_consen 4 LTFWRCSSDKDCCGWTP 20 (30)
T ss_dssp -SSSB-SSCCCCCTT--
T ss_pred eeceeecCCcccccCcc
Confidence 56686655678999984
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=23.83 E-value=91 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=11.8
Q ss_pred CCccEEECCCCcCCCccCc
Q 045099 96 QELQSLDLSENWFGGVSES 114 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~ 114 (217)
+.+.+++++.|.+....+.
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 4466677777766655544
No 94
>TIGR03271 methan_mark_5 putative methanogenesis marker protein 5. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.64 E-value=72 Score=22.57 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=14.8
Q ss_pred CCCCCCCCHHHHHHHHHHHh
Q 045099 1 MHGYDGCLEEERIGLLEIKR 20 (217)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~k~ 20 (217)
.|||.+|..++.....-+|+
T Consensus 92 ~FGC~GCartnEL~~~lir~ 111 (142)
T TIGR03271 92 AFGCMGCARTNELTVFLVRR 111 (142)
T ss_pred cccccccccHHHHHHHHHhh
Confidence 48999999988665555554
No 95
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=21.76 E-value=53 Score=28.27 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=6.7
Q ss_pred CCCccEEECCCCc
Q 045099 95 FQELQSLDLSENW 107 (217)
Q Consensus 95 l~~L~~L~l~~n~ 107 (217)
..+|++|-++.++
T Consensus 319 ~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 319 CHNLQVLELSGCQ 331 (483)
T ss_pred CCceEEEeccccc
Confidence 3555555555543
Done!