Query 045099
Match_columns 217
No_of_seqs 225 out of 2640
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 17:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.4E-30 1.8E-34 207.6 12.1 179 5-212 1-187 (313)
2 4eco_A Uncharacterized protein 99.9 1.1E-25 3.7E-30 198.3 11.2 78 8-106 28-115 (636)
3 3rgz_A Protein brassinosteroid 99.9 1.3E-25 4.4E-30 201.6 10.7 193 5-216 7-217 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 1.2E-24 3.9E-29 196.7 9.4 192 6-215 265-589 (876)
5 4fcg_A Uncharacterized protein 99.9 2.6E-24 9E-29 175.2 6.3 194 5-215 22-245 (328)
6 3e6j_A Variable lymphocyte rec 99.9 6.8E-21 2.3E-25 147.5 15.1 151 43-214 15-174 (229)
7 3m19_A Variable lymphocyte rec 99.8 2.3E-20 7.8E-25 146.3 14.7 120 90-216 53-172 (251)
8 2o6s_A Variable lymphocyte rec 99.8 5.3E-20 1.8E-24 140.1 15.5 152 45-216 5-165 (208)
9 2o6q_A Variable lymphocyte rec 99.8 7.3E-20 2.5E-24 144.9 14.6 119 91-216 80-198 (270)
10 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.6E-24 140.0 14.2 148 45-212 9-165 (220)
11 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.5E-24 139.4 13.1 150 45-214 9-168 (220)
12 3rgz_A Protein brassinosteroid 99.8 3E-19 1E-23 160.2 11.7 95 120-217 628-722 (768)
13 3m19_A Variable lymphocyte rec 99.8 4.2E-18 1.4E-22 133.4 16.6 149 59-214 35-194 (251)
14 2o6q_A Variable lymphocyte rec 99.8 4.8E-18 1.6E-22 134.4 16.5 163 45-216 3-174 (270)
15 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-18 4.5E-23 151.9 13.7 138 59-216 52-190 (635)
16 2xot_A Amphoterin-induced prot 99.8 4.4E-18 1.5E-22 140.1 14.2 151 46-216 17-180 (361)
17 3rfs_A Internalin B, repeat mo 99.8 5.4E-18 1.9E-22 134.3 14.1 150 59-216 63-222 (272)
18 3rfs_A Internalin B, repeat mo 99.8 8.7E-18 3E-22 133.1 14.8 120 90-216 79-198 (272)
19 3v47_A TOLL-like receptor 5B a 99.8 5.1E-18 1.7E-22 143.2 14.3 154 45-216 6-171 (455)
20 2v9t_B SLIT homolog 2 protein 99.8 1.2E-17 4E-22 128.5 13.9 114 96-216 32-145 (220)
21 1ozn_A Reticulon 4 receptor; N 99.8 9.3E-18 3.2E-22 133.6 13.3 151 59-216 32-194 (285)
22 1w8a_A SLIT protein; signaling 99.8 1.5E-17 5.1E-22 125.2 13.2 112 97-214 30-141 (192)
23 3vq2_A TLR4, TOLL-like recepto 99.8 8.9E-18 3E-22 146.6 13.7 138 59-216 32-170 (606)
24 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-17 4.1E-22 132.9 13.0 151 59-216 56-218 (285)
25 2z80_A TOLL-like receptor 2, v 99.7 5.9E-18 2E-22 138.7 11.3 151 43-214 26-189 (353)
26 2o6r_A Variable lymphocyte rec 99.7 1.6E-17 5.6E-22 123.2 12.5 114 95-215 27-140 (177)
27 4b8c_D Glucose-repressible alc 99.7 1.1E-18 3.9E-23 155.6 7.1 191 7-216 129-333 (727)
28 2z81_A CD282 antigen, TOLL-lik 99.7 6.5E-18 2.2E-22 145.7 11.6 149 46-215 3-164 (549)
29 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5E-22 131.8 12.3 137 59-215 28-165 (276)
30 2ell_A Acidic leucine-rich nuc 99.7 1E-17 3.4E-22 123.3 10.4 137 59-216 24-164 (168)
31 3v47_A TOLL-like receptor 5B a 99.7 3.7E-17 1.3E-21 137.9 14.4 123 87-216 290-412 (455)
32 3e6j_A Variable lymphocyte rec 99.7 9.1E-17 3.1E-21 124.2 14.8 139 49-216 14-152 (229)
33 1ogq_A PGIP-2, polygalacturona 99.7 4.8E-18 1.6E-22 137.3 7.2 147 59-213 76-235 (313)
34 2id5_A Lingo-1, leucine rich r 99.7 4E-17 1.4E-21 138.7 13.1 159 49-214 13-191 (477)
35 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.8E-21 123.0 14.3 132 63-216 15-146 (220)
36 3o6n_A APL1; leucine-rich repe 99.7 1.3E-17 4.5E-22 138.3 9.6 117 91-214 64-180 (390)
37 1p9a_G Platelet glycoprotein I 99.7 1.1E-16 3.9E-21 128.0 14.2 116 93-216 74-189 (290)
38 1p9a_G Platelet glycoprotein I 99.7 6.4E-17 2.2E-21 129.4 12.2 135 59-216 31-165 (290)
39 3oja_B Anopheles plasmodium-re 99.7 2.2E-17 7.5E-22 144.3 10.2 122 87-215 66-187 (597)
40 2o6s_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 119.1 15.3 115 95-216 27-141 (208)
41 2je0_A Acidic leucine-rich nuc 99.7 6.9E-17 2.4E-21 116.4 11.0 129 59-208 17-149 (149)
42 3zyi_A Leucine-rich repeat-con 99.7 1.7E-16 5.8E-21 134.2 14.4 159 49-215 56-234 (452)
43 2z66_A Variable lymphocyte rec 99.7 6.9E-17 2.4E-21 129.7 10.7 118 90-214 144-263 (306)
44 2xwt_C Thyrotropin receptor; s 99.7 4.8E-17 1.6E-21 126.3 9.4 135 59-215 31-172 (239)
45 4fcg_A Uncharacterized protein 99.7 4.9E-17 1.7E-21 132.2 9.3 114 94-216 181-294 (328)
46 3t6q_A CD180 antigen; protein- 99.7 1.6E-16 5.5E-21 138.7 12.9 136 59-214 33-168 (606)
47 2z63_A TOLL-like receptor 4, v 99.7 1.3E-16 4.5E-21 138.0 12.2 137 59-215 28-165 (570)
48 1ziw_A TOLL-like receptor 3; i 99.7 1E-16 3.5E-21 141.7 11.5 137 59-215 25-161 (680)
49 2z66_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 126.7 12.1 139 59-216 101-240 (306)
50 1xku_A Decorin; proteoglycan, 99.7 6.6E-16 2.3E-20 125.3 14.9 148 45-215 29-187 (330)
51 3zyj_A Leucine-rich repeat-con 99.7 4.4E-16 1.5E-20 131.2 14.3 160 49-216 45-224 (440)
52 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.7E-21 126.2 10.6 150 59-216 52-217 (276)
53 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.6E-21 120.3 10.0 114 90-214 82-196 (197)
54 3j0a_A TOLL-like receptor 5; m 99.7 1.4E-16 4.9E-21 144.3 11.7 148 47-215 14-164 (844)
55 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.5E-21 119.5 10.4 130 60-215 45-175 (197)
56 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.3E-21 114.6 9.3 114 94-216 15-130 (149)
57 2wfh_A SLIT homolog 2 protein 99.7 8E-16 2.7E-20 115.9 13.3 110 96-213 31-140 (193)
58 3vq2_A TLR4, TOLL-like recepto 99.7 1.4E-16 4.7E-21 139.1 9.7 118 91-215 419-537 (606)
59 1w8a_A SLIT protein; signaling 99.7 3.3E-16 1.1E-20 117.8 10.1 128 45-190 6-143 (192)
60 2ft3_A Biglycan; proteoglycan, 99.7 8.8E-16 3E-20 124.7 13.1 146 46-215 32-188 (332)
61 2id5_A Lingo-1, leucine rich r 99.7 4.3E-16 1.5E-20 132.4 11.6 148 59-213 56-214 (477)
62 1wwl_A Monocyte differentiatio 99.7 8.4E-16 2.9E-20 124.0 12.5 116 96-216 149-270 (312)
63 3zyj_A Leucine-rich repeat-con 99.7 7.8E-16 2.7E-20 129.7 12.6 149 59-216 88-248 (440)
64 2ell_A Acidic leucine-rich nuc 99.7 5.2E-16 1.8E-20 114.0 9.9 114 94-216 22-137 (168)
65 4g8a_A TOLL-like receptor 4; l 99.7 6.5E-16 2.2E-20 134.8 12.0 113 96-215 52-164 (635)
66 3zyi_A Leucine-rich repeat-con 99.7 1E-15 3.5E-20 129.4 12.8 149 59-216 99-259 (452)
67 2xot_A Amphoterin-induced prot 99.6 1.5E-15 5.1E-20 124.9 13.0 114 96-216 39-153 (361)
68 1wwl_A Monocyte differentiatio 99.6 5.7E-16 1.9E-20 125.0 9.9 149 59-215 121-290 (312)
69 2z7x_B TOLL-like receptor 1, v 99.6 2.4E-15 8.3E-20 129.0 12.1 110 94-212 372-481 (520)
70 2z7x_B TOLL-like receptor 1, v 99.6 3.8E-15 1.3E-19 127.7 13.3 116 94-216 322-461 (520)
71 4glp_A Monocyte differentiatio 99.6 1E-15 3.4E-20 123.4 8.6 115 94-215 143-267 (310)
72 1xku_A Decorin; proteoglycan, 99.6 6.2E-15 2.1E-19 119.6 13.3 117 89-216 164-280 (330)
73 3t6q_A CD180 antigen; protein- 99.6 6.4E-15 2.2E-19 128.5 14.1 147 60-214 255-415 (606)
74 2z63_A TOLL-like receptor 4, v 99.6 2.1E-15 7.3E-20 130.4 10.9 138 59-216 52-194 (570)
75 3g39_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 109.4 11.1 88 96-188 30-117 (170)
76 2z80_A TOLL-like receptor 2, v 99.6 5.1E-16 1.7E-20 127.1 6.3 135 59-213 76-212 (353)
77 3oja_A Leucine-rich immune mol 99.6 1.9E-15 6.4E-20 129.2 9.8 113 94-216 118-231 (487)
78 4eco_A Uncharacterized protein 99.6 6.2E-15 2.1E-19 129.8 13.2 151 60-216 403-583 (636)
79 2r9u_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 109.4 10.9 87 96-187 33-119 (174)
80 3o6n_A APL1; leucine-rich repe 99.6 8.3E-15 2.8E-19 121.4 12.9 120 83-212 80-199 (390)
81 3oja_B Anopheles plasmodium-re 99.6 7.1E-15 2.4E-19 128.4 13.0 122 82-213 85-206 (597)
82 4glp_A Monocyte differentiatio 99.6 1.8E-15 6E-20 121.9 8.5 120 86-215 159-288 (310)
83 2xwt_C Thyrotropin receptor; s 99.6 1.4E-15 5E-20 117.9 7.6 124 84-217 93-223 (239)
84 1a9n_A U2A', U2A'; complex (nu 99.6 4.4E-15 1.5E-19 110.0 9.9 128 59-211 19-152 (176)
85 2wfh_A SLIT homolog 2 protein 99.6 4.9E-15 1.7E-19 111.6 10.2 123 46-187 9-140 (193)
86 2ft3_A Biglycan; proteoglycan, 99.6 4.1E-15 1.4E-19 120.8 10.5 149 59-216 102-281 (332)
87 1ziw_A TOLL-like receptor 3; i 99.6 2.4E-15 8.1E-20 133.0 9.3 140 59-216 49-188 (680)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.2E-14 4E-19 126.1 13.4 119 90-216 371-490 (562)
89 3oja_A Leucine-rich immune mol 99.6 7.2E-15 2.5E-19 125.5 11.5 113 89-212 137-250 (487)
90 1h6t_A Internalin B; cell adhe 99.6 2.1E-14 7.3E-19 114.7 13.2 127 59-215 68-194 (291)
91 2z81_A CD282 antigen, TOLL-lik 99.6 1.2E-15 4.1E-20 131.6 6.3 137 59-214 50-211 (549)
92 1dce_A Protein (RAB geranylger 99.6 7.2E-15 2.5E-19 127.7 11.1 108 97-216 442-550 (567)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.2E-15 2.8E-19 127.0 11.4 148 58-214 352-512 (562)
94 1h6t_A Internalin B; cell adhe 99.6 2.7E-14 9.1E-19 114.2 13.5 127 59-215 90-216 (291)
95 3o53_A Protein LRIM1, AGAP0063 99.6 5.6E-15 1.9E-19 119.4 9.4 111 95-215 119-230 (317)
96 1h6u_A Internalin H; cell adhe 99.6 3.2E-14 1.1E-18 114.6 13.6 109 92-215 103-211 (308)
97 1h6u_A Internalin H; cell adhe 99.6 3.7E-14 1.3E-18 114.2 13.8 128 59-216 63-190 (308)
98 3j0a_A TOLL-like receptor 5; m 99.6 7E-15 2.4E-19 133.2 9.9 117 59-191 48-166 (844)
99 3o53_A Protein LRIM1, AGAP0063 99.6 1.9E-14 6.6E-19 116.2 11.5 115 87-212 135-250 (317)
100 2o6r_A Variable lymphocyte rec 99.6 2.3E-14 8E-19 106.1 10.9 128 45-190 5-141 (177)
101 1xeu_A Internalin C; cellular 99.6 3E-14 1E-18 112.3 11.4 126 59-215 63-188 (263)
102 1m9s_A Internalin B; cell inva 99.5 4.8E-14 1.6E-18 123.3 13.5 141 59-215 65-213 (605)
103 4ecn_A Leucine-rich repeat pro 99.5 3E-14 1E-18 129.0 12.1 151 60-216 645-823 (876)
104 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.2E-19 107.1 8.3 116 91-216 14-130 (176)
105 1xeu_A Internalin C; cellular 99.5 6.1E-14 2.1E-18 110.5 12.2 125 59-214 41-165 (263)
106 1m9s_A Internalin B; cell inva 99.5 1E-13 3.4E-18 121.3 13.0 109 92-215 83-191 (605)
107 4fmz_A Internalin; leucine ric 99.5 9.9E-14 3.4E-18 113.0 11.9 111 92-215 217-327 (347)
108 4fmz_A Internalin; leucine ric 99.5 1.5E-13 5.1E-18 111.9 12.5 108 92-212 239-346 (347)
109 1dce_A Protein (RAB geranylger 99.5 7.6E-14 2.6E-18 121.2 11.1 124 60-206 442-567 (567)
110 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 100.7 11.4 108 98-215 11-118 (170)
111 4b8c_D Glucose-repressible alc 99.5 2.4E-15 8.4E-20 134.1 0.8 92 92-191 243-334 (727)
112 3cvr_A Invasion plasmid antige 99.5 4.7E-14 1.6E-18 122.4 8.6 154 34-216 32-197 (571)
113 2r9u_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 99.9 11.3 108 99-216 15-122 (174)
114 1o6v_A Internalin A; bacterial 99.5 4E-13 1.4E-17 113.9 13.3 107 94-215 285-391 (466)
115 1o6v_A Internalin A; bacterial 99.5 3.7E-13 1.3E-17 114.1 12.3 128 59-216 243-370 (466)
116 2ast_B S-phase kinase-associat 99.5 1.2E-14 4E-19 117.9 2.4 112 92-210 89-206 (336)
117 4ay9_X Follicle-stimulating ho 99.5 1.8E-13 6.2E-18 112.0 9.2 119 46-181 8-136 (350)
118 2ifg_A High affinity nerve gro 99.4 6.5E-13 2.2E-17 108.3 10.4 90 92-187 27-117 (347)
119 2ast_B S-phase kinase-associat 99.4 1.7E-13 5.7E-18 111.1 6.4 148 59-213 70-237 (336)
120 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.3E-17 106.6 11.4 106 99-214 11-118 (347)
121 1ds9_A Outer arm dynein; leuci 99.4 5.1E-16 1.7E-20 117.2 -9.5 91 92-189 66-156 (198)
122 2ca6_A RAN GTPase-activating p 99.4 1.3E-13 4.6E-18 114.0 4.0 121 92-215 183-319 (386)
123 3goz_A Leucine-rich repeat-con 99.4 1.9E-13 6.5E-18 112.3 4.2 118 96-213 80-210 (362)
124 3bz5_A Internalin-J, INLJ; leu 99.4 1.1E-11 3.8E-16 105.0 14.0 107 92-216 144-250 (457)
125 3bz5_A Internalin-J, INLJ; leu 99.4 9.7E-12 3.3E-16 105.3 13.6 104 92-213 81-184 (457)
126 3cvr_A Invasion plasmid antige 99.4 7.5E-12 2.6E-16 108.6 12.8 130 59-216 80-224 (571)
127 2ca6_A RAN GTPase-activating p 99.3 1.4E-13 4.8E-18 113.9 1.3 115 96-213 159-288 (386)
128 1jl5_A Outer protein YOPM; leu 99.3 1.7E-11 6E-16 103.7 13.7 106 91-215 148-253 (454)
129 4ay9_X Follicle-stimulating ho 99.3 2.4E-12 8.3E-17 105.2 7.2 150 59-216 54-219 (350)
130 3g06_A SSPH2 (leucine-rich rep 99.3 3.2E-12 1.1E-16 112.0 7.6 161 34-216 11-198 (622)
131 1jl5_A Outer protein YOPM; leu 99.3 5E-11 1.7E-15 100.9 14.3 135 59-215 91-231 (454)
132 3goz_A Leucine-rich repeat-con 99.3 8.9E-13 3E-17 108.3 3.4 145 59-215 22-183 (362)
133 1ds9_A Outer arm dynein; leuci 99.3 5.8E-14 2E-18 105.9 -4.0 136 60-214 19-155 (198)
134 3g06_A SSPH2 (leucine-rich rep 99.3 1.3E-11 4.5E-16 108.2 9.7 107 95-215 180-300 (622)
135 1z7x_W Ribonuclease inhibitor; 99.2 1.2E-12 4E-17 110.4 0.6 87 124-213 313-412 (461)
136 1z7x_W Ribonuclease inhibitor; 99.2 1.5E-12 5.1E-17 109.8 0.8 143 59-212 227-383 (461)
137 3rw6_A Nuclear RNA export fact 99.2 1.1E-12 3.8E-17 103.2 -1.7 160 45-206 76-258 (267)
138 3un9_A NLR family member X1; l 99.1 8.2E-12 2.8E-16 103.1 1.9 140 59-213 101-253 (372)
139 3un9_A NLR family member X1; l 99.0 1.8E-11 6E-16 101.1 -0.4 141 59-213 72-225 (372)
140 1io0_A Tropomodulin; LRR prote 99.0 2E-10 7E-15 85.6 5.0 117 92-211 32-163 (185)
141 3sb4_A Hypothetical leucine ri 99.0 1.3E-09 4.3E-14 88.3 10.1 89 123-216 225-314 (329)
142 3sb4_A Hypothetical leucine ri 98.8 1E-08 3.4E-13 82.9 8.7 103 95-206 225-328 (329)
143 3ogk_B Coronatine-insensitive 98.8 1.7E-09 6E-14 93.7 4.3 93 120-214 432-528 (592)
144 3ogk_B Coronatine-insensitive 98.7 6.2E-09 2.1E-13 90.3 4.0 88 123-212 402-501 (592)
145 3rw6_A Nuclear RNA export fact 98.6 4.8E-08 1.6E-12 76.8 6.9 82 93-180 167-258 (267)
146 2p1m_B Transport inhibitor res 98.6 2.9E-08 9.9E-13 86.0 4.3 90 120-211 428-518 (594)
147 1io0_A Tropomodulin; LRR prote 98.6 1.2E-08 4.2E-13 75.8 1.6 121 58-187 35-165 (185)
148 2p1m_B Transport inhibitor res 98.4 7E-08 2.4E-12 83.6 2.1 86 123-212 396-494 (594)
149 3e4g_A ATP synthase subunit S, 98.4 1.9E-07 6.6E-12 68.6 4.2 87 96-187 61-154 (176)
150 4fdw_A Leucine rich hypothetic 98.4 1.7E-06 5.6E-11 72.0 10.3 122 84-215 214-361 (401)
151 3e4g_A ATP synthase subunit S, 98.3 3.4E-07 1.2E-11 67.2 3.2 84 124-210 61-150 (176)
152 2ra8_A Uncharacterized protein 98.2 3.3E-07 1.1E-11 75.2 2.4 63 147-212 251-320 (362)
153 2ra8_A Uncharacterized protein 98.2 1.7E-06 5.8E-11 70.9 6.2 111 93-213 169-293 (362)
154 4fdw_A Leucine rich hypothetic 98.2 9.7E-06 3.3E-10 67.3 10.1 115 84-207 168-308 (401)
155 1pgv_A TMD-1, tropomodulin TMD 98.1 6.2E-06 2.1E-10 61.6 6.2 116 93-210 38-168 (197)
156 4gt6_A Cell surface protein; l 97.7 0.00034 1.1E-08 57.6 11.4 115 84-209 253-367 (394)
157 4h09_A Hypothetical leucine ri 97.7 0.00024 8.1E-09 58.1 9.4 112 88-209 232-343 (379)
158 4gt6_A Cell surface protein; l 97.6 0.00038 1.3E-08 57.3 9.6 113 86-211 278-390 (394)
159 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00028 9.6E-09 52.6 6.8 88 119-209 36-136 (197)
160 4fs7_A Uncharacterized protein 97.3 0.0014 4.9E-08 53.9 9.5 85 119-209 292-376 (394)
161 4fs7_A Uncharacterized protein 97.1 0.001 3.5E-08 54.8 6.7 103 90-204 291-393 (394)
162 3rfe_A Platelet glycoprotein I 97.0 0.0017 5.7E-08 45.0 6.4 57 127-186 11-68 (130)
163 4h09_A Hypothetical leucine ri 97.0 0.0085 2.9E-07 48.8 11.5 111 89-209 210-320 (379)
164 3rfe_A Platelet glycoprotein I 96.9 0.0027 9.2E-08 44.0 6.4 37 97-137 32-68 (130)
165 2lz0_A Uncharacterized protein 62.2 12 0.00041 24.0 4.3 47 83-134 7-53 (100)
166 3ox7_P MH027; urokinase-type p 30.0 18 0.0006 15.9 0.7 11 44-54 5-15 (23)
167 2gx1_A Neurotoxin MAGI-5; spid 21.7 58 0.002 15.2 1.6 17 35-51 4-20 (29)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.4e-30 Score=207.59 Aligned_cols=179 Identities=25% Similarity=0.409 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCcc--ccceEEcCCC--CcEEEEecCCccccC--CCCCC
Q 045099 5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCD--WERLKCNATA--GRVTELSLNRLKHYK--SSNPN 78 (217)
Q Consensus 5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~--~~~~~ 78 (217)
+.|.+.|++||++||+++.++. .+.+|.. +.+||. |.||.|+... ++|+.++++++.+.+ .++
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~--~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-- 69 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-------TLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-- 69 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-------GGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC--
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-------cccCCCC--CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC--
Confidence 4699999999999999996543 6889976 568998 9999998654 799999999999886 332
Q ss_pred CCCCCceeecCCCCCCCCCccEEECCC-CcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccC
Q 045099 79 NSSDGVIILDLSLFPPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCD 157 (217)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 157 (217)
..+..+++|++|++++ |.+.+.+|. .|..+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus 70 -----------~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 70 -----------SSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp -----------GGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred -----------hhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 2344555555555553 555555554 455555555555555555555555555555555555555
Q ss_pred ccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCC-CCCEEeccCCCCC
Q 045099 158 NSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLR-NLKRLDLSNNYGF 212 (217)
Q Consensus 158 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~-~L~~L~l~~N~l~ 212 (217)
|.+++.+|. .+..+++|++|++++|.+++.+|. .+..++ +|++|++++|+++
T Consensus 135 N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 135 NALSGTLPP-SISSLPNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp SEEESCCCG-GGGGCTTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEE
T ss_pred CccCCcCCh-HHhcCCCCCeEECcCCcccCcCCH--HHhhhhhcCcEEECcCCeee
Confidence 555544444 455555555555555555555554 455554 5555555555544
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.1e-25 Score=198.26 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHhhhhccCCCCccccc-------cCCCcCCCCCCCccc---cceEEcCCCCcEEEEecCCccccCCCCC
Q 045099 8 LEEERIGLLEIKRFFISINGGEYADEI-------LTSWVDDGISDCCDW---ERLKCNATAGRVTELSLNRLKHYKSSNP 77 (217)
Q Consensus 8 ~~~~~~~l~~~k~~~~~~~~~~~~~~~-------l~~W~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~ 77 (217)
...|++||.+||+++.+++ |.. ..+|.. +.++|.| .||.|+.. ++|++++|+++++.|.+++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~-----w~~~~~~~~~~~~W~~--~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKN-----WSQQGFGTQPGANWNF--NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGG-----CCCCC------CCCCC--SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG
T ss_pred HHHHHHHHHHHHHHcCCCC-----cccCCcCCccCCCCCC--CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh
Confidence 3479999999999998776 322 347986 5789999 99999864 8999999999999866543
Q ss_pred CCCCCCceeecCCCCCCCCCccEEECCCC
Q 045099 78 NNSSDGVIILDLSLFPPFQELQSLDLSEN 106 (217)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 106 (217)
.++.+++|++|++++|
T Consensus 100 -------------~l~~L~~L~~L~Ls~N 115 (636)
T 4eco_A 100 -------------AIGQLTELEVLALGSH 115 (636)
T ss_dssp -------------GGGGCTTCCEEESCCG
T ss_pred -------------HHhcCccceEEECcCC
Confidence 3444555555555554
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.3e-25 Score=201.59 Aligned_cols=193 Identities=29% Similarity=0.314 Sum_probs=154.8
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEcCCCCcEEEEecCCccccCC---CCCCC--
Q 045099 5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKS---SNPNN-- 79 (217)
Q Consensus 5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~---~~~~~-- 79 (217)
.++.+.|++||++||+++.++. .+.+|.. +.+||.|.||.|+ .++|+.++++++.+.|. +++..
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-------~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-------LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLS 75 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-------SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-------cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhc
Confidence 4467889999999999997543 6899975 5689999999998 58999999999998875 33211
Q ss_pred ---------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHh-hcCCC
Q 045099 80 ---------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTS 149 (217)
Q Consensus 80 ---------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~ 149 (217)
...++.. .+..++.+++|++|++++|.+++.+|... .++.+++|++|++++|.+.+.+|..+ ..+++
T Consensus 76 L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 76 LTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLT--SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp CTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGG--GGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred cCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChH--HHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 1122211 13568889999999999999998766411 57889999999999999988777765 78999
Q ss_pred CCEEEccCccccCccchHh---hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 150 LTTLILCDNSIEGSRTKQG---LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 150 L~~L~l~~n~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
|++|++++|.+++..+. . +..+++|++|++++|.+++.++ +..+++|++|++++|++++.++
T Consensus 153 L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~ 217 (768)
T 3rgz_A 153 LEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP 217 (768)
T ss_dssp CSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC
T ss_pred CCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc
Confidence 99999999999976664 4 7889999999999999998554 3789999999999999988654
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.2e-24 Score=196.74 Aligned_cols=192 Identities=19% Similarity=0.178 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCC---CCCC--ccc------------cceEEcCCCCcEEEEecCC
Q 045099 6 GCLEEERIGLLEIKRFFISINGGEYADEILTSWVDDG---ISDC--CDW------------ERLKCNATAGRVTELSLNR 68 (217)
Q Consensus 6 ~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~---~~~~--c~w------------~gv~c~~~~~~v~~l~l~~ 68 (217)
.+...|++||++||+++.++ +|..+. ..++ |.| .||.|+. .++|++|+|++
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~ 332 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG 332 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT
T ss_pred ccchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc
Confidence 35568999999999999654 465422 1344 999 9999986 68999999999
Q ss_pred ccccCCCCCCCCC-CCceee------------------------------------------------------------
Q 045099 69 LKHYKSSNPNNSS-DGVIIL------------------------------------------------------------ 87 (217)
Q Consensus 69 ~~~~~~~~~~~~~-~~~~~~------------------------------------------------------------ 87 (217)
+++.|.+++.+.. ..+..+
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 9998776542100 000000
Q ss_pred ---------------------------cCCCCCCCCCccEEECCCCcCCC-----------------ccCcchhhccc--
Q 045099 88 ---------------------------DLSLFPPFQELQSLDLSENWFGG-----------------VSESKAYNSSG-- 121 (217)
Q Consensus 88 ---------------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~~~~~-- 121 (217)
-+..+..+++|++|++++|.+++ .+|. .++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~ 488 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWS 488 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGG
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhc
Confidence 11234556666666666666666 2444 444
Q ss_pred CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcc-ccC-ccchHhhcCC-------CCCCEEEccCCcCccccccc
Q 045099 122 NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNS-IEG-SRTKQGLANL-------RYLQVLDLSGNPITGRFIAR 192 (217)
Q Consensus 122 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~l-------~~L~~L~L~~n~l~~~~p~~ 192 (217)
.+++|++|+|++|.+.+.+|..++.+++|+.|++++|+ +++ .+|. .+..+ ++|++|++++|.++ .+|..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 66666777776666666666666666667777776666 665 4554 33333 36677777776666 34420
Q ss_pred ccccCCCCCCEEeccCCCCCCCC
Q 045099 193 LGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 193 ~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
..+..+++|+.|++++|+++.+|
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC
T ss_pred hhhhcCCCCCEEECCCCCcccch
Confidence 13566667777777777666554
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.6e-24 Score=175.25 Aligned_cols=194 Identities=19% Similarity=0.203 Sum_probs=129.1
Q ss_pred CCCCHHHHHHHHHHHhhhhccCCCCccccccCCCcC--CCCCCCccccceEEcC--------CCCcEEEEecCCccccCC
Q 045099 5 DGCLEEERIGLLEIKRFFISINGGEYADEILTSWVD--DGISDCCDWERLKCNA--------TAGRVTELSLNRLKHYKS 74 (217)
Q Consensus 5 ~~~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~--~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~ 74 (217)
.++...|++||++||..+..+. .+++..|.. .....+|.|.|+.|+. ...+|+.++++++.+. .
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~-----~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~ 95 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADR-----NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCC-----TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-S
T ss_pred cccCchHHHHHHHHHHhccCCc-----hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-h
Confidence 4466789999999999985443 256788941 1246899999999952 3478999999999887 3
Q ss_pred CCCCCC-C----------CCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHH
Q 045099 75 SNPNNS-S----------DGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSY 143 (217)
Q Consensus 75 ~~~~~~-~----------~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 143 (217)
+++... . +.+..+ +..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+.+.+|..
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~-~lp~----~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLR-ALPA----SIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCC-CCCG----GGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred cChhhhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccc-cCcH----HHhcCcCCCEEECCCCCCccccChh
Confidence 333211 0 111111 223556667777777777776 3344 5666777777777776666666665
Q ss_pred hhc---------CCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 144 LNT---------LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 144 ~~~---------l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+.. +++|++|++++|+++ .+|. .+..+++|++|++++|.+++ +|. .+..+++|++|++++|++.+.
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N~l~~-l~~--~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLSA-LGP--AIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESSCCCC-CCG--GGGGCTTCCEEECTTCTTCCB
T ss_pred HhhccchhhhccCCCCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCCCCCc-Cch--hhccCCCCCEEECcCCcchhh
Confidence 543 677777777777776 5665 57777777777777777775 555 667777777777777776554
Q ss_pred C
Q 045099 215 P 215 (217)
Q Consensus 215 p 215 (217)
.
T Consensus 245 ~ 245 (328)
T 4fcg_A 245 Y 245 (328)
T ss_dssp C
T ss_pred h
Confidence 3
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=6.8e-21 Score=147.50 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=129.8
Q ss_pred CCCCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccC
Q 045099 43 ISDCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSE 113 (217)
Q Consensus 43 ~~~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 113 (217)
+...|.|.++.|... ...++.++++++.+. .+.+..+..+++|++|++++|.++...+
T Consensus 15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQIT-------------KLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccC-------------ccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 468999999999742 246778888888877 2345668889999999999999988776
Q ss_pred cchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccc
Q 045099 114 SKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARL 193 (217)
Q Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 193 (217)
. .|..+++|++|+|++|.+++..+..+..+++|+.|++++|+++ .+|. .+..+++|++|++++|++++..+.
T Consensus 82 ~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~~-- 153 (229)
T 3e6j_A 82 G----VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPHG-- 153 (229)
T ss_dssp T----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCTT--
T ss_pred h----hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccCHH--
Confidence 5 6789999999999999999776777889999999999999998 6776 688999999999999999986656
Q ss_pred cccCCCCCCEEeccCCCCCCC
Q 045099 194 GLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 194 ~l~~l~~L~~L~l~~N~l~~~ 214 (217)
.+..+++|+.|++++|.+...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 788999999999999998754
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.3e-20 Score=146.27 Aligned_cols=120 Identities=28% Similarity=0.328 Sum_probs=62.9
Q ss_pred CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099 90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169 (217)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 169 (217)
..+..+++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~ 127 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVF 127 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred hHhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-cChhHh
Confidence 3455555555555555555555443 44555555555555555554444445555555555555555553 333234
Q ss_pred cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+++|++|++++|.+++..+. .+..+++|++|+|++|+++++++
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAG--AFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccCCcccEEECcCCcCCccCHH--HcCcCcCCCEEECCCCcCCccCH
Confidence 4555555555555555544333 44555555555555555555543
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=5.3e-20 Score=140.12 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=127.3
Q ss_pred CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099 45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK 115 (217)
Q Consensus 45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 115 (217)
-.|.|.++.|... ..+++.++++++.+. .+....+..+++|++|++++|.+++..+.
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 70 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK-------------SLPNGVFDELTSLTQLYLGGNKLQSLPNG- 70 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-------------CCCTTTTTTCTTCSEEECCSSCCCCCCTT-
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC-------------cCChhhhcccccCcEEECCCCccCccChh-
Confidence 4589999999642 235788888888776 23445678899999999999999987765
Q ss_pred hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099 116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL 195 (217)
Q Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l 195 (217)
.|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|++++|.+++..+. .+
T Consensus 71 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~ 144 (208)
T 2o6s_A 71 ---VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDG--VF 144 (208)
T ss_dssp ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT--TT
T ss_pred ---hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHH--Hh
Confidence 67899999999999999997666678899999999999999985 5544688999999999999999986655 68
Q ss_pred cCCCCCCEEeccCCCCCCCCC
Q 045099 196 SSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 196 ~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+++|++|++++|.+.+..+
T Consensus 145 ~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTCTTCCEEECCSCCBCCCTT
T ss_pred ccCCCccEEEecCCCeecCCC
Confidence 899999999999999877644
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.3e-20 Score=144.89 Aligned_cols=119 Identities=26% Similarity=0.293 Sum_probs=78.9
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
.|..+++|++|++++|.++...+. .|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++...+.
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~ 154 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred hhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHcc
Confidence 345556666666666666655544 45666677777777777766555566667777777777777764 4443566
Q ss_pred CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
.+++|++|++++|.+++..+. .+..+++|++|++++|+++++|+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEG--AFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCcccceeEecCCcCcEeChh--HhccCCCcCEEECCCCcCCcCCH
Confidence 777777777777777765444 56677777777777777777664
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.1e-19 Score=139.95 Aligned_cols=148 Identities=24% Similarity=0.369 Sum_probs=125.7
Q ss_pred CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099 45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK 115 (217)
Q Consensus 45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 115 (217)
-.|.|..+.|... ...++.++++++.+. .+....|..+++|++|++++|.+++..+.
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~-------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~- 74 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK-------------VIPPGAFSPYKKLRRIDLSNNQISELAPD- 74 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC-------------EECTTSSTTCTTCCEEECCSSCCCEECTT-
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC-------------CcCHhHhhCCCCCCEEECCCCcCCCcCHH-
Confidence 3478888888642 236778888887766 45566788999999999999999998887
Q ss_pred hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099 116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL 195 (217)
Q Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l 195 (217)
.|..+++|++|+|++|.++...+..+..+++|++|++++|++++..+. .+..+++|++|+|++|.+++..+. .+
T Consensus 75 ---~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~ 148 (220)
T 2v9t_B 75 ---AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKG--TF 148 (220)
T ss_dssp ---TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTT--TT
T ss_pred ---HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECHH--HH
Confidence 889999999999999999965556678899999999999999965454 799999999999999999987666 78
Q ss_pred cCCCCCCEEeccCCCCC
Q 045099 196 SSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 196 ~~l~~L~~L~l~~N~l~ 212 (217)
..+++|+.|++++|.+.
T Consensus 149 ~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred hCCCCCCEEEeCCCCcC
Confidence 89999999999999874
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=139.44 Aligned_cols=150 Identities=23% Similarity=0.313 Sum_probs=125.2
Q ss_pred CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceee-cCCCCCCCCCccEEECCCCcCCCccCc
Q 045099 45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIIL-DLSLFPPFQELQSLDLSENWFGGVSES 114 (217)
Q Consensus 45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 114 (217)
-.|.|..+.|... ...++.++++++.+. .+ ....|..+++|++|++++|.+++..+.
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~-------------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFT-------------VLEATGIFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-------------EECCCCCGGGCTTCCEEECCSSCCCEECTT
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCC-------------ccCchhhhccCCCCCEEECCCCcCCEECHH
Confidence 3467888887532 124566777777665 23 234578899999999999999998876
Q ss_pred chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccccccc
Q 045099 115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLG 194 (217)
Q Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 194 (217)
.|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..|. .+..+++|++|+|++|.+++..|. .
T Consensus 76 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~ 148 (220)
T 2v70_A 76 ----AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPG--A 148 (220)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTT--T
T ss_pred ----HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHH--H
Confidence 789999999999999999988888899999999999999999975554 789999999999999999997788 8
Q ss_pred ccCCCCCCEEeccCCCCCCC
Q 045099 195 LSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 195 l~~l~~L~~L~l~~N~l~~~ 214 (217)
+..+++|+.|++++|.+...
T Consensus 149 ~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTCTTCCEEECCSCCEECS
T ss_pred hcCCCCCCEEEecCcCCcCC
Confidence 99999999999999998643
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=3e-19 Score=160.25 Aligned_cols=95 Identities=32% Similarity=0.383 Sum_probs=86.3
Q ss_pred ccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCC
Q 045099 120 SGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLR 199 (217)
Q Consensus 120 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~ 199 (217)
+..+++|++|++++|+++|.+|..++.++.|+.|++++|+++|.+|. .+..+++|+.|+|++|+++|.+|. .+..++
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~ 704 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQ--AMSALT 704 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCG--GGGGCC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCCh--HHhCCC
Confidence 34467899999999999999999999999999999999999999997 899999999999999999999998 899999
Q ss_pred CCCEEeccCCCCCCCCCC
Q 045099 200 NLKRLDLSNNYGFTTPSQ 217 (217)
Q Consensus 200 ~L~~L~l~~N~l~~~p~~ 217 (217)
+|++|++++|+++|..|+
T Consensus 705 ~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCSEEECCSSEEEEECCS
T ss_pred CCCEEECcCCcccccCCC
Confidence 999999999999887653
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=4.2e-18 Score=133.36 Aligned_cols=149 Identities=23% Similarity=0.261 Sum_probs=123.1
Q ss_pred CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK 127 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~ 127 (217)
..++.++++++.+.+..+... +.+.+..+....+..+++|++|++++|.+++..+. .|..+++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh----HhcccCCCC
Confidence 357788888888775543221 11333444455688899999999999999988876 788999999
Q ss_pred EEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEecc
Q 045099 128 ILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207 (217)
Q Consensus 128 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~ 207 (217)
+|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++|++|++++|++++..+. .+..+++|+.|+++
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITLF 187 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCccCHH--HHhCCCCCCEEEee
Confidence 99999999997666678899999999999999995 5544788999999999999999987776 78899999999999
Q ss_pred CCCCCCC
Q 045099 208 NNYGFTT 214 (217)
Q Consensus 208 ~N~l~~~ 214 (217)
+|++...
T Consensus 188 ~N~~~c~ 194 (251)
T 3m19_A 188 GNQFDCS 194 (251)
T ss_dssp SCCBCTT
T ss_pred CCceeCC
Confidence 9999775
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=4.8e-18 Score=134.40 Aligned_cols=163 Identities=21% Similarity=0.226 Sum_probs=115.5
Q ss_pred CCccccceEEcCCCCcEEEEecCCccccCCCCCC---------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099 45 DCCDWERLKCNATAGRVTELSLNRLKHYKSSNPN---------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK 115 (217)
Q Consensus 45 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 115 (217)
++|.|.|+.|.- ...++.++++++.+.. ++.. .+.+.+..+....|..+++|++|++++|.++...+.
T Consensus 3 ~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~- 79 (270)
T 2o6q_A 3 ALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG- 79 (270)
T ss_dssp CCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT-
T ss_pred ccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh-
Confidence 678888887753 2344566666666553 2211 111233344445677788888888888888876654
Q ss_pred hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099 116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL 195 (217)
Q Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l 195 (217)
.|..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..+. .+
T Consensus 80 ---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~ 153 (270)
T 2o6q_A 80 ---IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKG--VF 153 (270)
T ss_dssp ---TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT--TT
T ss_pred ---hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHh--Hc
Confidence 56778888888888888886666667788888888888888875 4443677888888888888888875544 57
Q ss_pred cCCCCCCEEeccCCCCCCCCC
Q 045099 196 SSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 196 ~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+++|++|++++|+++++++
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcccceeEecCCcCcEeCh
Confidence 788888888888888887765
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.3e-18 Score=151.90 Aligned_cols=138 Identities=26% Similarity=0.267 Sum_probs=121.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++|++|.+. .+....|..+++|++|+|++|.|++..+. .|.++++|++|+|++|++++
T Consensus 52 ~~~~~LdLs~N~i~-------------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-------------HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCE
T ss_pred cCCCEEEeeCCCCC-------------CCCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCC
Confidence 46788888888876 56677899999999999999999998876 78999999999999999997
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-ccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+..|..+++|++|++++|++++ ++...+..+++|++|++++|.+++. +|. .+..+++|++|++++|+++++++
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEECG
T ss_pred CCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCch--hhccchhhhhhcccCcccccccc
Confidence 777789999999999999999985 5554789999999999999999863 566 78899999999999999988764
No 16
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=4.4e-18 Score=140.13 Aligned_cols=151 Identities=26% Similarity=0.277 Sum_probs=121.9
Q ss_pred CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCC-CCCCccEEECCCCcCCCccCcc
Q 045099 46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFP-PFQELQSLDLSENWFGGVSESK 115 (217)
Q Consensus 46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~ 115 (217)
.|.+..+.|... ...++.++++++.+. .+....+. .+++|++|++++|.+++..+.
T Consensus 17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~-------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~- 82 (361)
T 2xot_A 17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS-------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSE- 82 (361)
T ss_dssp EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCC-------------EECTTSSSSCCTTCCEEECCSSCCCEECTT-
T ss_pred EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCC-------------ccChhhhhhcccccCEEECCCCcCCccChh-
Confidence 467777777531 124566777777665 44555666 899999999999999998876
Q ss_pred hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccc
Q 045099 116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGL 195 (217)
Q Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l 195 (217)
.|..+++|++|+|++|+++...+..|..+++|+.|+|++|++++..+ ..+..+++|++|+|++|.+++..+. .+
T Consensus 83 ---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~--~~ 156 (361)
T 2xot_A 83 ---AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVE--LI 156 (361)
T ss_dssp ---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGG--GT
T ss_pred ---hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHH--Hh
Confidence 78999999999999999997777788999999999999999986444 4799999999999999999974333 34
Q ss_pred ---cCCCCCCEEeccCCCCCCCCC
Q 045099 196 ---SSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 196 ---~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+++|+.|+|++|+|+++|+
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCH
T ss_pred cCcccCCcCCEEECCCCCCCccCH
Confidence 578999999999999998874
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=5.4e-18 Score=134.26 Aligned_cols=150 Identities=23% Similarity=0.199 Sum_probs=104.2
Q ss_pred CcEEEEecCCccccCCCCCC----------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099 59 GRVTELSLNRLKHYKSSNPN----------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI 128 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~ 128 (217)
..++.++++++.+.+. +.- .+.+.+..+....+..+++|++|++++|.+++..+. .+..+++|++
T Consensus 63 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~ 137 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTY 137 (272)
T ss_dssp TTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCE
T ss_pred CCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCE
Confidence 4667777777776642 110 111222333344567778888888888888876665 5677888888
Q ss_pred EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099 129 LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208 (217)
Q Consensus 129 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~ 208 (217)
|++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|++|++++|.+++..+. .+..+++|+.|++++
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDG--VFDRLTSLQYIWLHD 214 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCS
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCccCHH--HHhCCcCCCEEEccC
Confidence 8888888876666667778888888888888875 4433567778888888888888876665 677788888888888
Q ss_pred CCCCCCCC
Q 045099 209 NYGFTTPS 216 (217)
Q Consensus 209 N~l~~~p~ 216 (217)
|.+.+..+
T Consensus 215 N~~~~~~~ 222 (272)
T 3rfs_A 215 NPWDCTCP 222 (272)
T ss_dssp SCBCCCTT
T ss_pred CCccccCc
Confidence 88776543
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=8.7e-18 Score=133.09 Aligned_cols=120 Identities=28% Similarity=0.264 Sum_probs=104.0
Q ss_pred CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099 90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169 (217)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 169 (217)
+.+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+
T Consensus 79 ~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 153 (272)
T 3rfs_A 79 SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVF 153 (272)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHh
Confidence 3577889999999999999988776 67889999999999999997777778899999999999999985 444467
Q ss_pred cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+++|++|++++|.+++..+. .+..+++|++|++++|+++++++
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEG--VFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccCccCCEEECCCCCcCccCHH--HhcCCccCCEEECCCCcCCccCH
Confidence 8899999999999999986665 67889999999999999998876
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=5.1e-18 Score=143.23 Aligned_cols=154 Identities=23% Similarity=0.224 Sum_probs=111.2
Q ss_pred CCccccc--eEEcCC--------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCc
Q 045099 45 DCCDWER--LKCNAT--------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSES 114 (217)
Q Consensus 45 ~~c~w~g--v~c~~~--------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 114 (217)
..|.|.+ +.|... ..+++.++++++.+. .+.+..+..+++|++|++++|.+.+.++.
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~~~~~i~~ 72 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIA-------------ELNETSFSRLQDLQFLKVEQQTPGLVIRN 72 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCC-------------EECTTTTSSCTTCCEEECCCCSTTCEECT
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccC-------------cCChhHhccCccccEEECcCCcccceECc
Confidence 3455554 677542 256888999998877 34455677788888888888887755532
Q ss_pred chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCcccccccc
Q 045099 115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFIARL 193 (217)
Q Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~~~ 193 (217)
. .|..+++|++|++++|.+++..|..+..+++|++|++++|++++.++. ..+..+++|++|++++|.+++..|.
T Consensus 73 ~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 147 (455)
T 3v47_A 73 N---TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-- 147 (455)
T ss_dssp T---TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC--
T ss_pred c---cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc--
Confidence 1 577788888888888888877777788888888888888888764443 1267778888888888888876565
Q ss_pred c-ccCCCCCCEEeccCCCCCCCCC
Q 045099 194 G-LSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 194 ~-l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
. +..+++|++|++++|+++++++
T Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp GGGGGCTTCCEEECTTCCBSCCCT
T ss_pred cccCCCCcccEEeCCCCcccccCh
Confidence 4 6778888888888888877654
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.2e-17 Score=128.48 Aligned_cols=114 Identities=25% Similarity=0.310 Sum_probs=105.4
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
+.|++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|++++|+++ .+|...+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCC
Confidence 6799999999999998876 7899999999999999999888999999999999999999999 4666568899999
Q ss_pred CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
++|+|++|.+++..+. .+..+++|++|+|++|+++++++
T Consensus 107 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 107 QLLLLNANKINCLRVD--AFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCCCCEeCHH--HcCCCCCCCEEECCCCcCCEECH
Confidence 9999999999998787 89999999999999999999876
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=9.3e-18 Score=133.58 Aligned_cols=151 Identities=23% Similarity=0.243 Sum_probs=111.9
Q ss_pred CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCc-CCCccCcchhhcccCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENW-FGGVSESKAYNSSGNLKQL 126 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~l~~L 126 (217)
..++.++++++.+.+..+... +.+.+..+.+..+..+++|++|++++|. ++...+. .+..+++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCC
Confidence 467778888877764322111 1123334445567788888888888886 7766565 67788888
Q ss_pred CEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099 127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206 (217)
Q Consensus 127 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l 206 (217)
++|++++|.+++..|..+..+++|++|++++|++++ ++...+..+++|++|++++|.+++..+. .+..+++|++|++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l 184 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLL 184 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEEC
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccCHH--HhcCccccCEEEC
Confidence 888888888887777778888888889998888875 4443677888899999998888875555 6788888999999
Q ss_pred cCCCCCCCCC
Q 045099 207 SNNYGFTTPS 216 (217)
Q Consensus 207 ~~N~l~~~p~ 216 (217)
++|+++++++
T Consensus 185 ~~n~l~~~~~ 194 (285)
T 1ozn_A 185 HQNRVAHVHP 194 (285)
T ss_dssp CSSCCCEECT
T ss_pred CCCcccccCH
Confidence 9988877643
No 22
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.5e-17 Score=125.23 Aligned_cols=112 Identities=25% Similarity=0.276 Sum_probs=99.4
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ 176 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 176 (217)
.|++|++++|.+++..+.. .|..+++|++|+|++|.+++..|..+..+++|++|++++|++++..+. .+..+++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK-MFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCC
T ss_pred CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-HhcCCCCCC
Confidence 7899999999999877631 378899999999999999988889999999999999999999965443 688899999
Q ss_pred EEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 177 ~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+|++++|++++..|. .+..+++|++|++++|.+.+.
T Consensus 106 ~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 106 TLNLYDNQISCVMPG--SFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSSCCCEECTT--SSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCeeCHH--HhhcCCCCCEEEeCCCCccCc
Confidence 999999999998888 889999999999999998764
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=8.9e-18 Score=146.61 Aligned_cols=138 Identities=28% Similarity=0.285 Sum_probs=107.6
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. .+....|..+++|++|++++|.+++..+. .|..+++|++|++++|.+++
T Consensus 32 ~~l~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-------------ILKSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCC
T ss_pred CCcCEEECCCCCcC-------------EeChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccc
Confidence 57888899888876 34455677888888888888888877766 67788888888888888887
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc-cccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG-RFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..|..++.+++|++|++++|.+++..+. .+..+++|++|++++|.+++ .+|. .++++++|++|++++|+++++++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~--~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPA--YFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCG--GGGTCTTCCEEECCSSCCCEECT
T ss_pred cChhhcCCcccCCEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechH--hHhhcCCCCEEEccCCcceecCh
Confidence 7777888888888888888888753333 57788888888888888875 4576 77888888888888888877654
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.2e-17 Score=132.93 Aligned_cols=151 Identities=22% Similarity=0.184 Sum_probs=107.7
Q ss_pred CcEEEEecCCccccCCCCCCC-----------CCCC-ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNN-----------SSDG-VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L 126 (217)
.+++.++++++.+.+..+... +.+. +..+.+..+..+++|++|++++|.+++..+. .+..+++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCC
Confidence 356667777666554322111 1111 3334455677788888888888888887665 67778888
Q ss_pred CEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099 127 KILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206 (217)
Q Consensus 127 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l 206 (217)
++|++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|++|++++|.+++..|. .+..+++|+.|++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l 208 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPH--AFRDLGRLMTLYL 208 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEEC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcccccCHh--HccCcccccEeeC
Confidence 888888888886666667788888888888888874 4443577788888888888888877676 7778888888888
Q ss_pred cCCCCCCCCC
Q 045099 207 SNNYGFTTPS 216 (217)
Q Consensus 207 ~~N~l~~~p~ 216 (217)
++|+++++++
T Consensus 209 ~~n~l~~~~~ 218 (285)
T 1ozn_A 209 FANNLSALPT 218 (285)
T ss_dssp CSSCCSCCCH
T ss_pred CCCcCCcCCH
Confidence 8888877763
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=138.72 Aligned_cols=151 Identities=25% Similarity=0.271 Sum_probs=99.1
Q ss_pred CCCCccccceEEcCC-----------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCc
Q 045099 43 ISDCCDWERLKCNAT-----------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGV 111 (217)
Q Consensus 43 ~~~~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 111 (217)
....|.|.++ |+.. ...++.++++++.+. .+....+..+++|++|++++|.+++.
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-------------YISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCc-------------ccCHHHhccCCCCCEEECCCCccCcc
Confidence 4578999987 6531 236778888888766 33444566777777777777777766
Q ss_pred cCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCc-Ccccc
Q 045099 112 SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNP-ITGRF 189 (217)
Q Consensus 112 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~-l~~~~ 189 (217)
.+. .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ +|. ..+..+++|++|++++|. ++...
T Consensus 92 ~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 92 EED----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CTT----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CHh----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccC
Confidence 555 56677777777777777775444456677777777777777763 443 246666777777777763 44443
Q ss_pred cccccccCCCCCCEEeccCCCCCCC
Q 045099 190 IARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 190 p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+. .+..+++|++|++++|+++++
T Consensus 167 ~~--~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 167 RK--DFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp TT--TTTTCCEEEEEEEEETTCCEE
T ss_pred HH--HccCCCCCCEEECCCCCcCcc
Confidence 44 566666666666666666655
No 26
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=1.6e-17 Score=123.21 Aligned_cols=114 Identities=22% Similarity=0.210 Sum_probs=95.5
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 174 (217)
.++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQ 101 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcc
Confidence 36789999999999987765 67889999999999999987666667889999999999999985 44446788999
Q ss_pred CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
|++|++++|.+++..+. .+..+++|++|++++|.+.+.+
T Consensus 102 L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCBCCCH
T ss_pred cCEEECcCCcceEeCHH--HhcCCcccCEEEecCCCeeccC
Confidence 99999999999975554 5678999999999999988754
No 27
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.1e-18 Score=155.56 Aligned_cols=191 Identities=15% Similarity=0.057 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHhhhhccCCCCccccccCCCcCCCCCCCccccceEEcCCCCcEEEEecCCccccCCCCCCC-----CC
Q 045099 7 CLEEERIGLLEIKRFFISINGGEYADEILTSWVDDGISDCCDWERLKCNATAGRVTELSLNRLKHYKSSNPNN-----SS 81 (217)
Q Consensus 7 ~~~~~~~~l~~~k~~~~~~~~~~~~~~~l~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~-----~~ 81 (217)
....+++++++++..+.... +..-..|.. .....+.|.++.+.. .+++.+++.++.+........ +.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~ 200 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSK-----TAKKQQPTG-DSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQ 200 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----TTC----------------------------------------------------
T ss_pred ccccchhhhhhhhhhccccc-----CcccCCCcC-CCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCc
Confidence 34567889999998886665 344556754 234567888877753 578888887766654211110 00
Q ss_pred CCce---------eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCE
Q 045099 82 DGVI---------ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTT 152 (217)
Q Consensus 82 ~~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 152 (217)
..+. .+....+..+..|+.|+|++|.+... +. .+..+++|++|+|++|.|+ .+|..+..+++|++
T Consensus 201 ~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 201 YSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-SA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV 274 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCSCC-CG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred ccccCccccccceecChhhhccCCCCcEEECCCCCCCCC-Ch----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence 1111 12345678899999999999999854 44 5668999999999999999 78999999999999
Q ss_pred EEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 153 LILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 153 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
|+|++|+|+ .+|. .+..+++|++|+|++|.++ .+|. .++.+++|+.|+|++|+|++.+|
T Consensus 275 L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~lp~--~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 275 LDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TLPW--EFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp EECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CCCS--STTSCTTCCCEECTTSCCCSHHH
T ss_pred EeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-ccCh--hhhcCCCccEEeCCCCccCCCCh
Confidence 999999999 6887 7999999999999999998 5788 89999999999999999998654
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=6.5e-18 Score=145.75 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=117.7
Q ss_pred CccccceEEcCC-----------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCc
Q 045099 46 CCDWERLKCNAT-----------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSES 114 (217)
Q Consensus 46 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 114 (217)
.|.|.++ |+.. ..+++.++++++.+. .+.+..+..+++|++|++++|.+++..+.
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-------------YIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCC-------------EECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccC-------------ccChhhhhcCCcccEEECCCCCcCccChh
Confidence 5889888 7632 236788888888776 34455678889999999999999887776
Q ss_pred chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCc-cchHhhcCCCCCCEEEccCCcCccccc-cc
Q 045099 115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGS-RTKQGLANLRYLQVLDLSGNPITGRFI-AR 192 (217)
Q Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~ 192 (217)
.|..+++|++|++++|.+++..|..++.+++|++|++++|.+++. +|. .+..+++|++|++++|.+.+.+| .
T Consensus 69 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~- 142 (549)
T 2z81_A 69 ----AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRI- 142 (549)
T ss_dssp ----TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTT-
T ss_pred ----hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHh-
Confidence 788889999999999999887777788899999999999988752 343 67888899999999888554454 4
Q ss_pred ccccCCCCCCEEeccCCCCCCCC
Q 045099 193 LGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 193 ~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
.+..+++|++|++++|++++..
T Consensus 143 -~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 143 -DFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp -TTTTCCEEEEEEEEETTCCEEC
T ss_pred -hhhcccccCeeeccCCcccccC
Confidence 6788888888888888887643
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.5e-17 Score=131.85 Aligned_cols=137 Identities=26% Similarity=0.276 Sum_probs=85.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++++++.+.+ +....+..+++|++|++++|.+++..+. .|..+++|++|++++|.+++
T Consensus 28 ~~l~~L~ls~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-------------LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp TTCCEEECTTCCCCE-------------ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCE
T ss_pred CCccEEECCCCcccc-------------cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCc
Confidence 357888888887762 3333456666666666666666665554 55666666666666666665
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-ccccccccCCCCCCEEeccCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++. +|. .+..+++|++|++++|++++++
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEEC
T ss_pred cChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCch--hhccCCCCCEEECCCCCCCcCC
Confidence 555566666666666666666664322 2455666666666666666652 355 5666666666666666666554
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=1e-17 Score=123.29 Aligned_cols=137 Identities=28% Similarity=0.255 Sum_probs=116.7
Q ss_pred CcEEEEecCCcccc-CCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099 59 GRVTELSLNRLKHY-KSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137 (217)
Q Consensus 59 ~~v~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (217)
..++.++++++.+. +.+ +..+..+++|++|++++|.+++. . .+..+++|++|++++|.++
T Consensus 24 ~~L~~L~l~~n~l~~~~i-------------~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKI-------------EGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIF 84 (168)
T ss_dssp TSCSEEECCSCBCBTTBC-------------SSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCC
T ss_pred ccCCEEECCCCCCChhhH-------------HHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCc
Confidence 57889999998876 322 23367789999999999999987 3 7889999999999999999
Q ss_pred ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc---ccccccCCCCCCEEeccCCCCCCC
Q 045099 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI---ARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+.+|..+..+++|++|++++|.+++......+..+++|++|++++|.+++..+ . .+..+++|++|++++|.+..+
T Consensus 85 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES--VFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH--HHTTCSSCCEETTEETTSCBC
T ss_pred hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH--HHHhCccCcEecCCCCChhhc
Confidence 87888888899999999999999863221368899999999999999998655 4 678999999999999999988
Q ss_pred CC
Q 045099 215 PS 216 (217)
Q Consensus 215 p~ 216 (217)
|.
T Consensus 163 ~~ 164 (168)
T 2ell_A 163 PD 164 (168)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=3.7e-17 Score=137.92 Aligned_cols=123 Identities=24% Similarity=0.236 Sum_probs=106.0
Q ss_pred ecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch
Q 045099 87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK 166 (217)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 166 (217)
+.+..+..+++|++|++++|.+++..+. .|..+++|++|++++|.+++..|..+..+++|++|++++|++++..|.
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 3455678889999999999999988776 788899999999999999887788889999999999999999865554
Q ss_pred HhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 167 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
.+..+++|++|++++|++++..+. .+..+++|++|++++|++++..+
T Consensus 366 -~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 366 -SFLGLPNLKELALDTNQLKSVPDG--IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCBCCCTT
T ss_pred -hccccccccEEECCCCccccCCHh--HhccCCcccEEEccCCCcccCCC
Confidence 788899999999999999986555 67889999999999999988654
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=9.1e-17 Score=124.19 Aligned_cols=139 Identities=24% Similarity=0.255 Sum_probs=115.2
Q ss_pred ccceEEcCCCCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099 49 WERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI 128 (217)
Q Consensus 49 w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~ 128 (217)
|..-.|.. +.++.+++.+. .++.. -.++|++|++++|.+++..+. .|..+++|++
T Consensus 14 ~~~~~Cs~-----~~v~c~~~~l~-------------~ip~~---~~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~ 68 (229)
T 3e6j_A 14 PSQCSCSG-----TTVDCRSKRHA-------------SVPAG---IPTNAQILYLHDNQITKLEPG----VFDSLINLKE 68 (229)
T ss_dssp CTTCEEET-----TEEECTTSCCS-------------SCCSC---CCTTCSEEECCSSCCCCCCTT----TTTTCTTCCE
T ss_pred CCCCEEeC-----CEeEccCCCcC-------------ccCCC---CCCCCCEEEcCCCccCccCHH----HhhCccCCcE
Confidence 44556753 34777777665 12221 237899999999999998887 7899999999
Q ss_pred EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccC
Q 045099 129 LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSN 208 (217)
Q Consensus 129 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~ 208 (217)
|+|++|.++...+..+..+++|+.|++++|++++ ++...+..+++|++|++++|.++ .+|. .+..+++|++|+|++
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~--~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPR--GIERLTHLTHLALDQ 144 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCT--TGGGCTTCSEEECCS
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-ccCc--ccccCCCCCEEECCC
Confidence 9999999986666678899999999999999995 55546889999999999999999 4787 889999999999999
Q ss_pred CCCCCCCC
Q 045099 209 NYGFTTPS 216 (217)
Q Consensus 209 N~l~~~p~ 216 (217)
|+++++++
T Consensus 145 N~l~~~~~ 152 (229)
T 3e6j_A 145 NQLKSIPH 152 (229)
T ss_dssp SCCCCCCT
T ss_pred CcCCccCH
Confidence 99999875
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=4.8e-18 Score=137.30 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=98.0
Q ss_pred CcEEEEecCC-ccccCCCCCCCCC-----------CCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCC
Q 045099 59 GRVTELSLNR-LKHYKSSNPNNSS-----------DGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQL 126 (217)
Q Consensus 59 ~~v~~l~l~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L 126 (217)
..++.+++++ +.+.+.++..... +.+....+..+..+++|++|++++|.+++.+|. .+..+++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCC
Confidence 3567788874 7776655432211 122223344567788888888888888877776 77788888
Q ss_pred CEEEccCCCCCccchHHhhcCC-CCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEe
Q 045099 127 KILNLGNNRLNDSILSYLNTLT-SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205 (217)
Q Consensus 127 ~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~ 205 (217)
++|++++|.+++.+|..+..++ +|+.|++++|++++.+|. .+..+. |++|++++|.+++.+|. .+..+++|+.|+
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~ 227 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASV--LFGSDKNTQKIH 227 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEEECCGG--GCCTTSCCSEEE
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCcccCcCCH--HHhcCCCCCEEE
Confidence 8888888888877888887777 788888888887766665 555554 66666666666655555 555555555555
Q ss_pred ccCCCCCC
Q 045099 206 LSNNYGFT 213 (217)
Q Consensus 206 l~~N~l~~ 213 (217)
+++|++++
T Consensus 228 L~~N~l~~ 235 (313)
T 1ogq_A 228 LAKNSLAF 235 (313)
T ss_dssp CCSSEECC
T ss_pred CCCCceee
Confidence 55555544
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=138.72 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=76.8
Q ss_pred ccceEEcC---------CCCcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcC
Q 045099 49 WERLKCNA---------TAGRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWF 108 (217)
Q Consensus 49 w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 108 (217)
|..+.|.. ....++.++++++.+.+..+... +.+.+..+.+..|..+++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 56677753 12467788888888763321110 01122222233444445555555555554
Q ss_pred CCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc
Q 045099 109 GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR 188 (217)
Q Consensus 109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 188 (217)
+...+. .|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+. .+..+++|++|++++|.+++.
T Consensus 93 ~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 93 KLIPLG----VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSCCTT----SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSC
T ss_pred CccCcc----cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCccc
Confidence 444333 344455555555555555544444444555555555555555432222 444455555555555555543
Q ss_pred ccccccccCCCCCCEEeccCCCCCCC
Q 045099 189 FIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 189 ~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
.+. .+..+++|+.|++++|.+.++
T Consensus 168 ~~~--~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 168 PTE--ALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp CHH--HHTTCTTCCEEEEESCCCCEE
T ss_pred Chh--HhcccCCCcEEeCCCCcCcEe
Confidence 333 344555555555555555444
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=123.03 Aligned_cols=132 Identities=22% Similarity=0.213 Sum_probs=111.8
Q ss_pred EEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH
Q 045099 63 ELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS 142 (217)
Q Consensus 63 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 142 (217)
.++++++.+.. ++. .+ ...+++|++++|.+++..+.. .|..+++|++|++++|.+++..+.
T Consensus 15 ~l~~s~n~l~~-------------iP~-~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~ 75 (220)
T 2v70_A 15 TVDCSNQKLNK-------------IPE-HI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEG 75 (220)
T ss_dssp EEECCSSCCSS-------------CCS-CC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTT
T ss_pred EeEeCCCCccc-------------Ccc-CC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHH
Confidence 68888887762 111 12 245689999999999986531 578999999999999999987777
Q ss_pred HhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 143 YLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 143 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
.+..+++|++|++++|++++ ++...+..+++|++|+|++|.+++..|. .+..+++|++|+|++|+++++++
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGND--SFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTT--SSTTCTTCSEEECTTSCCCCBCT
T ss_pred HhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHh--HcCCCccCCEEECCCCcCCEECH
Confidence 89999999999999999986 4444799999999999999999998787 88999999999999999999865
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=1.3e-17 Score=138.34 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=77.5
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
.+..+++|++|++++|.+++..+. .|..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|...+.
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 138 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 138 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred HhcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhc
Confidence 345566777777777777666554 5666777777777777776655666666777777777777776 35543456
Q ss_pred CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
.+++|++|++++|.+++..+. .+..+++|++|++++|+++++
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTT--TTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCCcEEECCCCccCccChh--hccCCCCCCEEECCCCcCCcc
Confidence 667777777777777665555 566667777777777766654
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.1e-16 Score=127.95 Aligned_cols=116 Identities=29% Similarity=0.298 Sum_probs=80.8
Q ss_pred CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099 93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172 (217)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l 172 (217)
..+++|++|++++|.++.. |. .+..+++|++|++++|++++..+..+..+++|++|++++|++++ +|...+..+
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l-~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 147 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSL-PL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPT 147 (290)
T ss_dssp SCCTTCCEEECCSSCCSSC-CC----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTC
T ss_pred CCCCcCCEEECCCCcCCcC-ch----hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccc
Confidence 5566777777777777643 32 56677777777777777776555667777777777777777774 444456677
Q ss_pred CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
++|+.|++++|+++...+. .+..+++|++|++++|+++.+|+
T Consensus 148 ~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAG--LLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp TTCCEEECTTSCCSCCCTT--TTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCEEECCCCcCCccCHH--HhcCcCCCCEEECCCCcCCccCh
Confidence 7777777777777764444 55667777777777777777664
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=6.4e-17 Score=129.41 Aligned_cols=135 Identities=28% Similarity=0.307 Sum_probs=114.6
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++++++.+. .+....+..+++|++|++++|.+++..+ ...+++|++|++++|.++
T Consensus 31 ~~l~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~- 90 (290)
T 1p9a_G 31 KDTTILHLSENLLY-------------TFSLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQ- 90 (290)
T ss_dssp TTCCEEECTTSCCS-------------EEEGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCS-
T ss_pred CCCCEEEcCCCcCC-------------ccCHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCC-
Confidence 35666777776665 3445668889999999999999988654 368999999999999998
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
.+|..+..+++|++|++++|++++ +++..+..+++|++|++++|++++..+. .+..+++|+.|++++|+++++|+
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCSCCCT
T ss_pred cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChh--hcccccCCCEEECCCCcCCccCH
Confidence 677788899999999999999995 5544789999999999999999986665 77899999999999999999886
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.2e-17 Score=144.33 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=83.6
Q ss_pred ecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch
Q 045099 87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK 166 (217)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 166 (217)
++...+..+++|++|++++|.+++.++. .|..+++|++|+|++|.+++..|..++.+++|++|++++|.+++ +|.
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~ 140 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPR 140 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCH
Confidence 3334455667777777777777776665 66677777777777777776666666777777777777777763 444
Q ss_pred HhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 167 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
..+..+++|++|++++|.+++..|. .+..+++|+.|++++|.+++++
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECTTSCCSBCC
T ss_pred HHhccCCCCCEEEeeCCcCCCCChh--hhhcCCcCcEEECcCCCCCCcC
Confidence 3456777777777777777766665 6677777777777777776653
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.2e-16 Score=119.14 Aligned_cols=115 Identities=28% Similarity=0.278 Sum_probs=101.9
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 174 (217)
.++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++...+..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccC
Confidence 46899999999999987775 67899999999999999997666678899999999999999995 55546789999
Q ss_pred CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
|++|++++|.+++..+. .+..+++|++|++++|+++++++
T Consensus 102 L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDG--VFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCEEEcCCCcCcccCHh--HhccCCcCCEEECCCCccceeCH
Confidence 99999999999986665 68899999999999999998876
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=6.9e-17 Score=116.44 Aligned_cols=129 Identities=26% Similarity=0.264 Sum_probs=107.6
Q ss_pred CcEEEEecCCcccc-CCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099 59 GRVTELSLNRLKHY-KSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137 (217)
Q Consensus 59 ~~v~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (217)
.+++.++++++.+. +.+ +..+..+++|++|++++|.+++. . .+..+++|++|++++|.++
T Consensus 17 ~~l~~L~l~~n~l~~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKL-------------EGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVS 77 (149)
T ss_dssp GGCSEEECTTCBCBTTBC-------------CSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCC
T ss_pred ccCeEEEccCCcCChhHH-------------HHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCccc
Confidence 46788999988876 332 23467889999999999999987 3 7889999999999999999
Q ss_pred ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc---ccccccCCCCCCEEeccC
Q 045099 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI---ARLGLSSLRNLKRLDLSN 208 (217)
Q Consensus 138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~l~~l~~L~~L~l~~ 208 (217)
+.+|..+..+++|++|++++|.+++......+..+++|++|++++|.+++..+ . .+..+++|++|++++
T Consensus 78 ~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN--VFKLLPQLTYLDGYD 149 (149)
T ss_dssp SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHH--HHHHCTTCCEETTBC
T ss_pred chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHH--HHHHCCCcccccCCC
Confidence 87888888899999999999999863211368899999999999999998654 4 678899999999864
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.7e-16 Score=134.19 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=87.0
Q ss_pred ccceEEcCC---------CCcEEEEecCCccccCCCCCC-----------CCCCCceeecCCCCCCCCCccEEECCCCcC
Q 045099 49 WERLKCNAT---------AGRVTELSLNRLKHYKSSNPN-----------NSSDGVIILDLSLFPPFQELQSLDLSENWF 108 (217)
Q Consensus 49 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 108 (217)
|..+.|... ...++.++++++.+.+..+.. .+.+.+..+....|..+++|++|++++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 567888642 246788899888877432211 111222333334455555555555555555
Q ss_pred CCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc
Q 045099 109 GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR 188 (217)
Q Consensus 109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 188 (217)
+...+. .|..+++|++|++++|.++...+..+..+++|+.|++++|+..+.++...+..+++|++|++++|.+++
T Consensus 136 ~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 136 TVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CccChh----hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 554443 455555555555555555543344455555555555555333234444345566666666666666664
Q ss_pred ccccccccCCCCCCEEeccCCCCCCCC
Q 045099 189 FIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 189 ~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
+| .+..+++|+.|+|++|++++++
T Consensus 211 ~~---~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 211 MP---NLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CC---CCTTCTTCCEEECTTSCCSEEC
T ss_pred cc---cccccccccEEECcCCcCcccC
Confidence 23 3556666777777777666554
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=6.9e-17 Score=129.70 Aligned_cols=118 Identities=27% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCCCCCCCccEEECCCCcCCC-ccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099 90 SLFPPFQELQSLDLSENWFGG-VSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG 168 (217)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 168 (217)
..+..+++|++|++++|.+++ ..|. .+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+ ..
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 218 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FP 218 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GG
T ss_pred hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hh
Confidence 345566666677776666665 3343 56667777777777777776666667777777777777777764333 25
Q ss_pred hcCCCCCCEEEccCCcCcccccccccccCCC-CCCEEeccCCCCCCC
Q 045099 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLR-NLKRLDLSNNYGFTT 214 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~-~L~~L~l~~N~l~~~ 214 (217)
+..+++|++|++++|.+++..+. .+..++ +|++|++++|.+++.
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEECS
T ss_pred ccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCeecc
Confidence 66677777777777777776666 666663 777777777776543
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=4.8e-17 Score=126.29 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=78.0
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCc-CCCccCcchhhcccCCCCCCEEEccC-CCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENW-FGGVSESKAYNSSGNLKQLKILNLGN-NRL 136 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~l~~L~~L~L~~-n~l 136 (217)
..++.++++++.+. .+....+..+++|++|++++|. ++...+. .|..+++|++|++++ |.+
T Consensus 31 ~~l~~L~l~~n~l~-------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-------------TIPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp TTCCEEEEESCCCS-------------EECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTC
T ss_pred CcccEEEEeCCcce-------------EECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCe
Confidence 46778888887776 2334445566666666666665 5555444 455666666666665 666
Q ss_pred CccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC---EEEccCC-cCcccccccccccCCCCCC-EEeccCCCC
Q 045099 137 NDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ---VLDLSGN-PITGRFIARLGLSSLRNLK-RLDLSNNYG 211 (217)
Q Consensus 137 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~l~~l~~L~-~L~l~~N~l 211 (217)
+...+..+..+++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+. .+..+++|+ +|++++|++
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~--~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTT--TTTTTBSSEEEEECCSCCC
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcc--cccchhcceeEEEcCCCCC
Confidence 64444455566666666666666653 443 44555555 5555555 55543333 455555555 555555555
Q ss_pred CCCC
Q 045099 212 FTTP 215 (217)
Q Consensus 212 ~~~p 215 (217)
+.+|
T Consensus 169 ~~i~ 172 (239)
T 2xwt_C 169 TSVQ 172 (239)
T ss_dssp CEEC
T ss_pred cccC
Confidence 5444
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=4.9e-17 Score=132.24 Aligned_cols=114 Identities=22% Similarity=0.168 Sum_probs=90.2
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
.+++|++|++++|.++ .+|. .+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|. .+..++
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~----~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~ 253 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPA----SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRA 253 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCG----GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCC
T ss_pred cCCCCCEEECcCCCcC-cchH----hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH-HhcCCC
Confidence 3778888888888887 4454 67788888888888888885 555678888888888888888877776 678888
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+|++|++++|.+.+.+|. .+..+++|++|++++|++.+..|
T Consensus 254 ~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CCCEEECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCEEECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhhcc
Confidence 888888888888888887 78888888888888887766544
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=1.6e-16 Score=138.66 Aligned_cols=136 Identities=21% Similarity=0.129 Sum_probs=71.5
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++++++.+.+ +.+..|..+++|++|++++|.+++..|. .|..+++|++|++++|.+++
T Consensus 33 ~~l~~L~Ls~n~i~~-------------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT-------------IQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp TTCCEEECTTCCCSE-------------ECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSE
T ss_pred CcCcEEEccCCccCc-------------CChhHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccc
Confidence 468889999988773 3334455555555555555555554444 45555555555555555555
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++.... .+..+++|++|++++|+++++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCC--TTCCCTTCCEEECCSSCCCEE
T ss_pred cChhhhcccccccEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCcc--cccCCcccCEEEcccCccccc
Confidence 4455555555555555555555532122 344555555555555555542111 222345555555555544443
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=138.02 Aligned_cols=137 Identities=26% Similarity=0.283 Sum_probs=98.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. .+....|..+++|++|++++|.+++..+. .|..+++|++|++++|.+++
T Consensus 28 ~~l~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-------------HLGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp SSCCEEECCSCCCC-------------EECTTTTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCE
T ss_pred ccccEEEccCCccC-------------ccChhHhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCc
Confidence 46788899888876 33445667777777778777777776665 66777777777777777776
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc-cccccccccCCCCCCEEeccCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG-RFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
..|..+..+++|++|++++|++++ ++...+..+++|++|++++|.+++ .+|. .+.++++|++|++++|++++++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~--~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECTTSCCCEEC
T ss_pred cCHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChh--hhcccCCCCEEeCcCCccceec
Confidence 666677777777777777777764 333246777777777777777775 3566 6777777777777777776654
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=1e-16 Score=141.71 Aligned_cols=137 Identities=28% Similarity=0.284 Sum_probs=81.2
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+.+. ....|..+++|++|++++|.+++..+. .|..+++|++|++++|.+++
T Consensus 25 ~~l~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-------------PAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp TTCSEEECCSSCCCCC-------------CGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCC
T ss_pred CCCcEEECCCCCCCCc-------------CHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCc
Confidence 5788889988887632 233455566666666666666665554 55556666666666666654
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
..+..+..+++|++|++++|++++ +++..+..+++|++|++++|.+++..+. .+..+++|++|++++|++++++
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCC--SSSCCTTCCEEECCSSCCCCBC
T ss_pred cChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCch--hhcccccCCEEEccCCcccccC
Confidence 333345566666666666666653 3322455666666666666666655554 5555666666666666555543
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=2.2e-16 Score=126.75 Aligned_cols=139 Identities=23% Similarity=0.263 Sum_probs=118.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++++++.+.+.. ....+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++
T Consensus 101 ~~L~~L~l~~n~l~~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMS------------EFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp TTCCEEECTTSEEESST------------TTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTTCEEGG
T ss_pred CCCCEEECCCCcccccc------------cchhhhhccCCCEEECCCCcCCccchh----hcccCcCCCEEECCCCcccc
Confidence 46777888887766211 124578899999999999999988776 78899999999999999986
Q ss_pred -cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 139 -SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 139 -~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..|..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++..+. .+..+++|++|++++|++++.++
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTF--PYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSG--GGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChh--hccCcccCCEeECCCCCCcccCH
Confidence 5788899999999999999999965454 788999999999999999987666 78899999999999999988764
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=6.6e-16 Score=125.29 Aligned_cols=148 Identities=20% Similarity=0.285 Sum_probs=91.0
Q ss_pred CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099 45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK 115 (217)
Q Consensus 45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 115 (217)
..|.|+.+.|... ...++.++++++.+.+ +....+..+++|++|++++|.+++..|.
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 94 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-------------IKDGDFKNLKNLHTLILINNKISKISPG- 94 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-------------BCTTTTTTCTTCCEEECCSSCCCCBCTT-
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-------------eChhhhccCCCCCEEECCCCcCCeeCHH-
Confidence 3578998888641 2356778888887763 2334566677777777777777766555
Q ss_pred hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc--cccccc
Q 045099 116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG--RFIARL 193 (217)
Q Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~p~~~ 193 (217)
.|..+++|++|++++|.++ .+|..+. ++|++|++++|.+++ ++...+..+++|++|++++|.++. ..+.
T Consensus 95 ---~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 165 (330)
T 1xku_A 95 ---AFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG-- 165 (330)
T ss_dssp ---TTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTT--
T ss_pred ---HhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChh--
Confidence 5666777777777777666 3443332 566666666666653 333355666666666666666643 3333
Q ss_pred cccCCCCCCEEeccCCCCCCCC
Q 045099 194 GLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 194 ~l~~l~~L~~L~l~~N~l~~~p 215 (217)
.+..+++|++|++++|.++.+|
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCC
T ss_pred hccCCCCcCEEECCCCccccCC
Confidence 4555666666666666655554
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=4.4e-16 Score=131.24 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=86.2
Q ss_pred ccceEEcCC---------CCcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcC
Q 045099 49 WERLKCNAT---------AGRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWF 108 (217)
Q Consensus 49 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 108 (217)
|..+.|... ...++.++++++.+.+..+... +.+.+..+....|..+++|++|++++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 567788541 2456778888887763321110 11122223333444555555555555555
Q ss_pred CCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc
Q 045099 109 GGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR 188 (217)
Q Consensus 109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 188 (217)
+...+. .|..+++|++|++++|.++...+..+..+++|+.|++++|+..+.++...+..+++|++|++++|.++.
T Consensus 125 ~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 125 TTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CeeCHh----HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 554443 455555555555555555544444555555555555555333334444345566666666666666663
Q ss_pred ccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 189 FIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 189 ~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+| .+..+++|+.|+|++|+++++++
T Consensus 200 ~~---~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 200 IP---NLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp CC---CCTTCSSCCEEECTTSCCCEECT
T ss_pred cc---ccCCCcccCEEECCCCccCccCh
Confidence 33 35566677777777776666543
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.4e-16 Score=126.19 Aligned_cols=150 Identities=27% Similarity=0.276 Sum_probs=96.6
Q ss_pred CcEEEEecCCccccCCCCCC-----------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPN-----------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK 127 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~ 127 (217)
.+++.++++++.+.+..+.. .+.+.+..+....+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~ 127 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLK 127 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch----hcccCCCCC
Confidence 46777888877765322211 111223334445566777777777777777776654 566777777
Q ss_pred EEEccCCCCCcc-chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC----EEEccCCcCcccccccccccCCCCCC
Q 045099 128 ILNLGNNRLNDS-ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ----VLDLSGNPITGRFIARLGLSSLRNLK 202 (217)
Q Consensus 128 ~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~----~L~L~~n~l~~~~p~~~~l~~l~~L~ 202 (217)
+|++++|.+++. +|..+..+++|+.|++++|++++ ++...+..+.+|+ .|++++|.+++..+. .....+|+
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~---~~~~~~L~ 203 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLK 203 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCSSCCCEECTT---SSCSCCEE
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCCCcccccCcc---ccCCCccc
Confidence 777777777653 46777777777777777777774 3322454444444 777777777764333 33445788
Q ss_pred EEeccCCCCCCCCC
Q 045099 203 RLDLSNNYGFTTPS 216 (217)
Q Consensus 203 ~L~l~~N~l~~~p~ 216 (217)
+|++++|+++++|+
T Consensus 204 ~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 204 ELALDTNQLKSVPD 217 (276)
T ss_dssp EEECCSSCCSCCCT
T ss_pred EEECCCCceeecCH
Confidence 99999998888875
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.4e-16 Score=120.33 Aligned_cols=114 Identities=19% Similarity=0.243 Sum_probs=91.1
Q ss_pred CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcc-ccCccchHh
Q 045099 90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNS-IEGSRTKQG 168 (217)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~ 168 (217)
+.+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .++ .
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~ 154 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--P 154 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--G
T ss_pred hhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--h
Confidence 3567788899999999998876666 78888999999999999988788888899999999999998 65 465 4
Q ss_pred hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.+.
T Consensus 155 l~~l~~L~~L~l~~n~i~~-~~---~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 155 LKTLPELKSLNIQFDGVHD-YR---GIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp GGGCSSCCEEECTTBCCCC-CT---TGGGCSSCCEEEECBC-----
T ss_pred hcCCCCCCEEECCCCCCcC-hH---HhccCCCCCEEEeeCcccCCc
Confidence 7888999999999999886 33 567888999999999988653
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=144.27 Aligned_cols=148 Identities=26% Similarity=0.298 Sum_probs=102.1
Q ss_pred ccccceEEcCCCCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCcc-CcchhhcccCCCC
Q 045099 47 CDWERLKCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVS-ESKAYNSSGNLKQ 125 (217)
Q Consensus 47 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~l~~ 125 (217)
|.|..|-+ ...+++.++++++.+. .+.+..|..+++|++|++++|.+.+.+ +. .|..+++
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~-------------~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~ 74 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIR-------------TVTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPN 74 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCC-------------EECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCC-------------ccChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCC
Confidence 45666655 3568899999998877 334556677777777777777555544 33 5677777
Q ss_pred CCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCccccc-ccccccCCCCCCE
Q 045099 126 LKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFI-ARLGLSSLRNLKR 203 (217)
Q Consensus 126 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p-~~~~l~~l~~L~~ 203 (217)
|++|+|++|.+++..|..+..+++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+ . .++++++|++
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~L~~L~~ 152 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKS 152 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG--GGGTCSSCCE
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch--hHhhCCCCCE
Confidence 77777777777766677777777777777777777764443 126677777777777777776433 3 5677777777
Q ss_pred EeccCCCCCCCC
Q 045099 204 LDLSNNYGFTTP 215 (217)
Q Consensus 204 L~l~~N~l~~~p 215 (217)
|++++|.++++.
T Consensus 153 L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 153 IDFSSNQIFLVC 164 (844)
T ss_dssp EEEESSCCCCCC
T ss_pred EECCCCcCCeeC
Confidence 777777776654
No 55
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.9e-16 Score=119.53 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=111.0
Q ss_pred cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099 60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS 139 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 139 (217)
+++.++++++.+. . .+.+..+++|++|++++|.++... .+..+++|++|++++|.+++.
T Consensus 45 ~L~~L~l~~n~i~-------------~--l~~l~~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~l~~~ 103 (197)
T 4ezg_A 45 SLTYITLANINVT-------------D--LTGIEYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSD 103 (197)
T ss_dssp TCCEEEEESSCCS-------------C--CTTGGGCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTTCBGG
T ss_pred CccEEeccCCCcc-------------C--hHHHhcCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCccCcc
Confidence 5778888888766 1 124678899999999999776542 678899999999999999987
Q ss_pred chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCc-CcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 140 ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 140 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
.+..+..+++|++|++++|.+++..+. .+..+++|++|++++|. ++. ++ .+..+++|++|++++|++++++
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~-~~---~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD-IM---PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCC-CG---GGGGCSSCCEEECTTBCCCCCT
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccc-cH---hhcCCCCCCEEECCCCCCcChH
Confidence 888899999999999999999976665 78999999999999998 664 44 5788999999999999998875
No 56
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=1.5e-16 Score=114.60 Aligned_cols=114 Identities=29% Similarity=0.290 Sum_probs=100.4
Q ss_pred CCCCccEEECCCCcCC-CccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099 94 PFQELQSLDLSENWFG-GVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l 172 (217)
..++|+.|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHC
T ss_pred CCccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhC
Confidence 3578999999999998 66776 778999999999999999975 7788999999999999999976665 67789
Q ss_pred CCCCEEEccCCcCccc-ccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 173 RYLQVLDLSGNPITGR-FIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 173 ~~L~~L~L~~n~l~~~-~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
++|++|++++|.+++. .+. .+..+++|++|++++|+++++|+
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIE--PLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHG--GGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCEEECCCCcCCChHHHH--HHhhCCCCCEEeCcCCcccchHH
Confidence 9999999999999984 336 78999999999999999998875
No 57
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=8e-16 Score=115.90 Aligned_cols=110 Identities=27% Similarity=0.361 Sum_probs=95.1
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
++|++|++++|.++.. |. .|..+++|++|+|++|.+++..+..|..+++|+.|++++|++++ +++..+..+++|
T Consensus 31 ~~l~~L~L~~n~i~~i-p~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLV-PK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSC-CG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCchh-HH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHHhCCCCCC
Confidence 5799999999999854 44 78899999999999999998777889999999999999999986 444478899999
Q ss_pred CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099 176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
++|+|++|.++...+. .+..+++|+.|++++|.+..
T Consensus 105 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEG--AFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CEEECCSSCCCBCCTT--TTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCCCCeeChh--hhhcCccccEEEeCCCCeec
Confidence 9999999999976555 68889999999999998753
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=1.4e-16 Score=139.08 Aligned_cols=118 Identities=25% Similarity=0.173 Sum_probs=63.2
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc-cchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND-SILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 169 (217)
.+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|. .+
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~ 493 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-VF 493 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TT
T ss_pred hhhccccCCEEECcCCCCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-hh
Confidence 344555555566655555555444 45555555555555555554 2444455555555555555555543332 45
Q ss_pred cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
..+++|++|++++|++++..|. .+..+++|+.|++++|+++.+|
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSS--HYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGG--GTTTCTTCCEEECTTSCCCCEE
T ss_pred cccccCCEEECCCCcCCCcCHH--HccCCCcCCEEECCCCcCcccC
Confidence 5555555555555555554454 5555555555555555555444
No 59
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.3e-16 Score=117.83 Aligned_cols=128 Identities=25% Similarity=0.357 Sum_probs=106.4
Q ss_pred CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecC-CCCCCCCCccEEECCCCcCCCccCc
Q 045099 45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDL-SLFPPFQELQSLDLSENWFGGVSES 114 (217)
Q Consensus 45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~ 114 (217)
-.|.|..+.|... ...++.++++++.+.+ +.. ..+..+++|++|++++|.+++..+.
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR-------------ISSDGLFGRLPHLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS-------------BCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc-------------cCCccccccCCCCCEEECCCCCCCCcCHh
Confidence 3477888888542 2367778888877662 222 2478899999999999999999887
Q ss_pred chhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc
Q 045099 115 KAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI 190 (217)
Q Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 190 (217)
.|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|. .+..+++|++|++++|.+++..+
T Consensus 73 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 73 ----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCCSGG
T ss_pred ----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccCcCc
Confidence 889999999999999999988888899999999999999999976665 78999999999999999986443
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=8.8e-16 Score=124.71 Aligned_cols=146 Identities=25% Similarity=0.328 Sum_probs=104.3
Q ss_pred CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch
Q 045099 46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA 116 (217)
Q Consensus 46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 116 (217)
.|.|+.+.|... ...++.++++++.+. .+.+..+..+++|++|++++|.+++..+.
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 96 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-------------ELRKDDFKGLQHLYALVLVNNKISKIHEK-- 96 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-------------EECTTTTTTCTTCCEEECCSSCCCEECGG--
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-------------ccCHhHhhCCCCCcEEECCCCccCccCHh--
Confidence 378888888642 235677788777765 34455678888888888888888887666
Q ss_pred hhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc--ccccccc
Q 045099 117 YNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG--RFIARLG 194 (217)
Q Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~ 194 (217)
.|..+++|++|++++|.++ .+|..+. ++|++|++++|++++ ++...+..+++|++|++++|.++. ..+. .
T Consensus 97 --~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~ 168 (332)
T 2ft3_A 97 --AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPG--A 168 (332)
T ss_dssp --GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTT--S
T ss_pred --HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcc--c
Confidence 7788888888888888887 4555443 788888888888874 444467888888888888888763 3444 4
Q ss_pred ccCCCCCCEEeccCCCCCCCC
Q 045099 195 LSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 195 l~~l~~L~~L~l~~N~l~~~p 215 (217)
+..+ +|++|++++|+++++|
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCC
T ss_pred ccCC-ccCEEECcCCCCCccC
Confidence 5555 5666666666665554
No 61
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=132.40 Aligned_cols=148 Identities=25% Similarity=0.217 Sum_probs=122.1
Q ss_pred CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK 127 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~ 127 (217)
.+++.++++++.+.+..+... +.+.+..++...|..+++|++|++++|.+++..+. .|..+++|+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~ 131 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLK 131 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCC
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCC
Confidence 467788888887765433221 11233344455678899999999999999998877 889999999
Q ss_pred EEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEecc
Q 045099 128 ILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLS 207 (217)
Q Consensus 128 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~ 207 (217)
+|++++|.+++..+..+..+++|+.|++++|++++ ++...+..+++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEIS 208 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCCEECTT--CSCSCTTCCEEEEE
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCcEeChh--hcccCcccceeeCC
Confidence 99999999998888889999999999999999985 6655799999999999999999987776 88999999999999
Q ss_pred CCCCCC
Q 045099 208 NNYGFT 213 (217)
Q Consensus 208 ~N~l~~ 213 (217)
+|.+.+
T Consensus 209 ~~~~~~ 214 (477)
T 2id5_A 209 HWPYLD 214 (477)
T ss_dssp CCTTCC
T ss_pred CCcccc
Confidence 987543
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=8.4e-16 Score=123.96 Aligned_cols=116 Identities=23% Similarity=0.156 Sum_probs=66.5
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc--chHHh--hcCCCCCEEEccCccccC--ccchHhh
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS--ILSYL--NTLTSLTTLILCDNSIEG--SRTKQGL 169 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p~~~~ 169 (217)
++|++|++++|.+++..+. .|..+++|++|++++|++.+. .|..+ ..+++|++|++++|++++ .++...+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEESCSCCCCCTT----TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccchHH----HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 5566666666666665554 566666666666666666544 23333 556666666666666652 1222233
Q ss_pred cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+++|++|++++|.+++.+|.. .+..+++|++|++++|+++.+|.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCSSCCS
T ss_pred hcCCCCCEEECCCCcCCcccchh-hhhhcCCCCEEECCCCccChhhh
Confidence 45566666666666666644310 34445666666666666665553
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=7.8e-16 Score=129.73 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=117.0
Q ss_pred CcEEEEecCCccccCCCCCC-----------CCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPN-----------NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK 127 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~ 127 (217)
.+++.++++++.+.+..+.. .+.+.+..+....|..+++|++|++++|.++...+. .|..+++|+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~ 163 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLR 163 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT----TTTTCTTCC
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH----HhhhCcccC
Confidence 46777888887765432111 112334444555688899999999999999987776 788999999
Q ss_pred EEEccCC-CCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099 128 ILNLGNN-RLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206 (217)
Q Consensus 128 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l 206 (217)
+|++++| .+....+..+..+++|++|++++|+++ .+|. +..+++|++|++++|.+++..|. .+..+++|+.|++
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L 238 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPG--SFQGLMHLQKLWM 238 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTT--TTTTCTTCCEEEC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChh--hhccCccCCEEEC
Confidence 9999985 455444457888999999999999998 5664 78899999999999999987787 8899999999999
Q ss_pred cCCCCCCCCC
Q 045099 207 SNNYGFTTPS 216 (217)
Q Consensus 207 ~~N~l~~~p~ 216 (217)
++|+++++++
T Consensus 239 ~~n~l~~~~~ 248 (440)
T 3zyj_A 239 IQSQIQVIER 248 (440)
T ss_dssp TTCCCCEECT
T ss_pred CCCceeEECh
Confidence 9999988764
No 64
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.2e-16 Score=114.02 Aligned_cols=114 Identities=29% Similarity=0.245 Sum_probs=99.8
Q ss_pred CCCCccEEECCCCcCC-CccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCC
Q 045099 94 PFQELQSLDLSENWFG-GVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANL 172 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l 172 (217)
..++|++|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|. .+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHC
T ss_pred CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhC
Confidence 3578999999999998 66665 678899999999999999965 7788899999999999999976665 67779
Q ss_pred CCCCEEEccCCcCcccc-cccccccCCCCCCEEeccCCCCCCCCC
Q 045099 173 RYLQVLDLSGNPITGRF-IARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 173 ~~L~~L~L~~n~l~~~~-p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
++|++|++++|.+++.. +. .+..+++|++|++++|+++++|+
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~--~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLE--PLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGG--GGSSCSCCCEEECCSSGGGTSTT
T ss_pred CCCCEEeccCCccCcchhHH--HHhcCCCCCEEEeeCCcCcchHH
Confidence 99999999999999842 25 78899999999999999998875
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=6.5e-16 Score=134.81 Aligned_cols=113 Identities=23% Similarity=0.220 Sum_probs=102.4
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
+.+++|+|++|.|++..+. .|..+++|++|+|++|.|++..+..|..+++|++|+|++|++++ +|...|..+++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCC
Confidence 4689999999999998877 89999999999999999998777789999999999999999985 665579999999
Q ss_pred CEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 176 QVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 176 ~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
++|++++|++++..+. .++.+++|++|++++|++++++
T Consensus 127 ~~L~Ls~N~l~~l~~~--~~~~L~~L~~L~Ls~N~l~~~~ 164 (635)
T 4g8a_A 127 QKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFK 164 (635)
T ss_dssp CEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSCCCCCC
T ss_pred CEEECCCCcCCCCChh--hhhcCcccCeeccccCccccCC
Confidence 9999999999986666 7899999999999999998764
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1e-15 Score=129.39 Aligned_cols=149 Identities=20% Similarity=0.152 Sum_probs=117.3
Q ss_pred CcEEEEecCCccccCCCCCCC-----------CCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK 127 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~ 127 (217)
.+++.++++++.+.+..+... +.+.+..+....+..+++|++|++++|.++...+. .|..+++|+
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~ 174 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLM 174 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT----TTTTCTTCC
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHh----HHhcCCccc
Confidence 467888888888765432221 11334445555678899999999999999887766 788999999
Q ss_pred EEEccCC-CCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099 128 ILNLGNN-RLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206 (217)
Q Consensus 128 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l 206 (217)
+|++++| .+....+..+..+++|++|++++|++++ +|. +..+++|++|++++|.+++..|. .+..+++|+.|++
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L 249 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN--LTPLVGLEELEMSGNHFPEIRPG--SFHGLSSLKKLWV 249 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC--CTTCTTCCEEECTTSCCSEECGG--GGTTCTTCCEEEC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc--ccccccccEEECcCCcCcccCcc--cccCccCCCEEEe
Confidence 9999984 5554334568889999999999999984 553 78889999999999999987787 8899999999999
Q ss_pred cCCCCCCCCC
Q 045099 207 SNNYGFTTPS 216 (217)
Q Consensus 207 ~~N~l~~~p~ 216 (217)
++|+++++++
T Consensus 250 ~~n~l~~~~~ 259 (452)
T 3zyi_A 250 MNSQVSLIER 259 (452)
T ss_dssp TTSCCCEECT
T ss_pred CCCcCceECH
Confidence 9999987754
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=1.5e-15 Score=124.94 Aligned_cols=114 Identities=25% Similarity=0.197 Sum_probs=103.0
Q ss_pred CCccEEECCCCcCCCccCcchhhccc-CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSG-NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRY 174 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~ 174 (217)
..++.|++++|.+++..+. .+. .+++|++|+|++|.|++..+..|..+++|++|+|++|++++ ++...+..+++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc-CCHHHhCCCcC
Confidence 4589999999999998876 676 89999999999999998777889999999999999999985 55547899999
Q ss_pred CCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 175 LQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 175 L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
|++|+|++|.+++..+. .+..+++|++|+|++|+++++|+
T Consensus 114 L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRN--AFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp CCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCSCCG
T ss_pred CCEEECCCCcccEECHH--HhCCcccCCEEECCCCcCCeeCH
Confidence 99999999999987777 89999999999999999999875
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=5.7e-16 Score=124.96 Aligned_cols=149 Identities=22% Similarity=0.204 Sum_probs=108.6
Q ss_pred CcEEEEecCCccccCCCCC-----------C-----CCCCCceeecCCCCCCCCCccEEECCCCcCCCcc--Ccchhhcc
Q 045099 59 GRVTELSLNRLKHYKSSNP-----------N-----NSSDGVIILDLSLFPPFQELQSLDLSENWFGGVS--ESKAYNSS 120 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~ 120 (217)
..++.++++++.+.+. +. . .+.+.+..+.+..+..+++|++|++++|.+.+.. +..+ .+
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~ 197 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL--CP 197 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS--CT
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH--Hh
Confidence 3566777777776653 11 1 0112333445567889999999999999987752 2210 23
Q ss_pred cCCCCCCEEEccCCCCCc--cch-HHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccC
Q 045099 121 GNLKQLKILNLGNNRLND--SIL-SYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS 197 (217)
Q Consensus 121 ~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~ 197 (217)
..+++|++|++++|.+++ .++ ..+..+++|++|++++|++++.+|...+..+++|++|++++|.++ .+|. .+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~--~~~- 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLP- 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS--SCC-
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh--hcc-
Confidence 789999999999999983 233 344678999999999999997664335667889999999999998 5776 554
Q ss_pred CCCCCEEeccCCCCCCCC
Q 045099 198 LRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 198 l~~L~~L~l~~N~l~~~p 215 (217)
++|++|++++|+++++|
T Consensus 274 -~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp -SEEEEEECCSSCCCSCC
T ss_pred -CCceEEECCCCCCCCCh
Confidence 78999999999998885
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=128.96 Aligned_cols=110 Identities=27% Similarity=0.294 Sum_probs=47.2
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
.+++|++|++++|.+++.+|.. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|. .+..++
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~-~~~~l~ 444 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK-QVVKLE 444 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG-GGGGCT
T ss_pred hCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch-hhhcCC
Confidence 3444444444444444422210 233344444444444444433333221 34445555555444 3443 233445
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
+|++|++++|+++. +|.. .+..+++|++|++++|+++
T Consensus 445 ~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 445 ALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCcCCc-cCHH-HhccCCcccEEECcCCCCc
Confidence 55555555555543 3320 2444455555555555444
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.62 E-value=3.8e-15 Score=127.73 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=63.0
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc--cchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND--SILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
.+++|++|++++|.+++..+. .+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|...+..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 444555555555555554443 44445555555555555543 233444445555555555555543333322333
Q ss_pred C----------------------CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 172 L----------------------RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 172 l----------------------~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+ ++|++|++++|+++ .+|. .+..+++|++|++++|+++.+|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~--~~~~l~~L~~L~L~~N~l~~l~~ 461 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPK--QVVKLEALQELNVASNQLKSVPD 461 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCG--GGGGCTTCCEEECCSSCCCCCCT
T ss_pred CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccch--hhhcCCCCCEEECCCCcCCccCH
Confidence 3 45666666666666 3555 55677788888888888877765
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=123.36 Aligned_cols=115 Identities=19% Similarity=0.142 Sum_probs=63.3
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc--chH--HhhcCCCCCEEEccCccccCccch---
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS--ILS--YLNTLTSLTTLILCDNSIEGSRTK--- 166 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~--~~~~l~~L~~L~l~~n~l~~~~p~--- 166 (217)
.+++|++|++++|.+++..+. .+..+++|++|++++|++.+. ++. .+..+++|++|++++|+++. ++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCE----QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTT----SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHH----HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence 356677777777777666555 556666666666666665532 111 12445566666666666642 221
Q ss_pred HhhcCCCCCCEEEccCCcCcccccccccccCC---CCCCEEeccCCCCCCCC
Q 045099 167 QGLANLRYLQVLDLSGNPITGRFIARLGLSSL---RNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 167 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l---~~L~~L~l~~N~l~~~p 215 (217)
..+..+++|++|++++|.+++..|. .+..+ ++|++|++++|+++.+|
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNP--SAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCS--CCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHHhcCCCCCEEECCCCCCCccchh--hHHhccCcCcCCEEECCCCCCCchh
Confidence 0134455666666666666654444 34443 45566666666555554
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=6.2e-15 Score=119.56 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=89.1
Q ss_pred CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099 89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG 168 (217)
Q Consensus 89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 168 (217)
...+..+++|++|++++|.++..+. .+ .++|++|++++|.+++..|..+..+++|+.|++++|.+++..+ ..
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~-----~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~ 235 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQ-----GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GS 235 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCS-----SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TT
T ss_pred hhhccCCCCcCEEECCCCccccCCc-----cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hh
Confidence 3445667788888888888776433 22 2678888888888887777788888888888888888875444 36
Q ss_pred hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+..+++|++|++++|.++ .+|. .+..+++|++|++++|+++++++
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~--~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPG--GLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCT--TTTTCSSCCEEECCSSCCCCCCT
T ss_pred ccCCCCCCEEECCCCcCc-cCCh--hhccCCCcCEEECCCCcCCccCh
Confidence 778888888888888888 4676 77888888888888888888765
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=6.4e-15 Score=128.50 Aligned_cols=147 Identities=25% Similarity=0.223 Sum_probs=86.1
Q ss_pred cEEEEecCCccccCCCCCCCC-----------CCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCE
Q 045099 60 RVTELSLNRLKHYKSSNPNNS-----------SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKI 128 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~ 128 (217)
.++.++++++.+.+..+.... .+.+..+ +..+..+++|++|++++|.+++..+. .+..+++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQI----SASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGG----CGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchh----hhhccCcCCE
Confidence 678888888877643221110 0111111 12345556666666666666655554 5556666666
Q ss_pred EEccCCCCCccchH-HhhcCCCCCEEEccCccccCcc--chHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEe
Q 045099 129 LNLGNNRLNDSILS-YLNTLTSLTTLILCDNSIEGSR--TKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLD 205 (217)
Q Consensus 129 L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~ 205 (217)
|++++|.+.+.+|. .+..+++|++|++++|.+++.. +. .+..+++|++|++++|.+++..|. .+..+++|++|+
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~ 406 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKTE--AFKECPQLELLD 406 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-TTTTCTTCCEEECCSCSCEEECTT--TTTTCTTCSEEE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-hcccCCCCCEEECCCCcCCcCCHH--HhcCCccCCeEE
Confidence 66666666544443 3556666666666666665432 32 466666777777777776665565 666677777777
Q ss_pred ccCCCCCCC
Q 045099 206 LSNNYGFTT 214 (217)
Q Consensus 206 l~~N~l~~~ 214 (217)
+++|++++.
T Consensus 407 l~~n~l~~~ 415 (606)
T 3t6q_A 407 LAFTRLKVK 415 (606)
T ss_dssp CTTCCEECC
T ss_pred CCCCcCCCc
Confidence 777776554
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=130.41 Aligned_cols=138 Identities=23% Similarity=0.226 Sum_probs=115.8
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. .+....|..+++|++|++++|.+++..+. .|..+++|++|++++|.+++
T Consensus 52 ~~L~~L~Ls~n~i~-------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~ 114 (570)
T 2z63_A 52 PELQVLDLSRCEIQ-------------TIEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLAS 114 (570)
T ss_dssp SSCCEEECTTCCCC-------------EECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCC
T ss_pred CCceEEECCCCcCC-------------ccCcccccCchhCCEEeCcCCcCCccCHh----hhcCcccccccccccccccc
Confidence 46788899888776 34566788899999999999999988776 78899999999999999986
Q ss_pred cchHHhhcCCCCCEEEccCccccC-ccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCC----CEEeccCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEG-SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL----KRLDLSNNYGFT 213 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L----~~L~l~~N~l~~ 213 (217)
..+..++.+++|++|++++|.+++ .+|. .+.++++|++|++++|.+++..+. .+..+++| +.+++++|.+++
T Consensus 115 l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 115 LENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp STTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEECGG--GGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccceecHH--HccchhccchhhhhcccCCCCcee
Confidence 555468899999999999999986 3565 788999999999999999987666 77777777 899999999887
Q ss_pred CCC
Q 045099 214 TPS 216 (217)
Q Consensus 214 ~p~ 216 (217)
+++
T Consensus 192 ~~~ 194 (570)
T 2z63_A 192 IQP 194 (570)
T ss_dssp ECT
T ss_pred cCH
Confidence 765
No 75
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=4.6e-15 Score=109.45 Aligned_cols=88 Identities=30% Similarity=0.311 Sum_probs=59.6
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
+.|++|++++|.+++..+. .|..+++|++|+|++|+|++..+..+..+++|++|++++|++++ ++...+..+++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence 5677777777777776665 66677777777777777775555556667777777777777764 443356667777
Q ss_pred CEEEccCCcCccc
Q 045099 176 QVLDLSGNPITGR 188 (217)
Q Consensus 176 ~~L~L~~n~l~~~ 188 (217)
++|+|++|+++..
T Consensus 105 ~~L~L~~N~~~c~ 117 (170)
T 3g39_A 105 THIWLLNNPWDCA 117 (170)
T ss_dssp CEEECCSSCBCTT
T ss_pred CEEEeCCCCCCCC
Confidence 7777777776653
No 76
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=5.1e-16 Score=127.14 Aligned_cols=135 Identities=23% Similarity=0.261 Sum_probs=86.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. .+....+..+++|++|++++|.+++..+. .+..+++|++|++++|.++.
T Consensus 76 ~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 76 VNLQALVLTSNGIN-------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSS
T ss_pred CCCCEEECCCCccC-------------ccCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcc
Confidence 46778888887766 23344566777777777777777765543 46667777777777777764
Q ss_pred cch-HHhhcCCCCCEEEccCcc-ccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099 139 SIL-SYLNTLTSLTTLILCDNS-IEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 139 ~~p-~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
..+ ..+..+++|++|++++|+ ++ .+++..+..+++|++|++++|.+++..|. .+..+++|++|++++|++..
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPK--SLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSCSTT
T ss_pred cCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHH--HHhccccCCeecCCCCcccc
Confidence 322 256667777777777774 44 34333566667777777777777665555 55666555555555555543
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.9e-15 Score=129.17 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=82.1
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhh-cCCCCCEEEccCccccCccchHhhcCC
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN-TLTSLTTLILCDNSIEGSRTKQGLANL 172 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~l 172 (217)
.+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++ ++. ...+
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~~--~~~l 190 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVF 190 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCC
T ss_pred ccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-ccc--cccC
Confidence 356788888888888877666 667778888888888888877777665 67778888888887774 332 3457
Q ss_pred CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 173 RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 173 ~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
++|++|+|++|.+++ +|. .+..+++|+.|++++|.++++|+
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~--~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGP--EFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp TTCCEEECCSSCCCE-ECG--GGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCEEECCCCCCCC-CCH--hHcCCCCccEEEecCCcCcccch
Confidence 777777777777776 444 56677777777777777777654
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=6.2e-15 Score=129.76 Aligned_cols=151 Identities=18% Similarity=0.175 Sum_probs=102.6
Q ss_pred cEEEEecCCccccCCCCCCCC--------CCCceeec----------CCCCCCCCCccEEECCCCcCCCccCcchhh---
Q 045099 60 RVTELSLNRLKHYKSSNPNNS--------SDGVIILD----------LSLFPPFQELQSLDLSENWFGGVSESKAYN--- 118 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~--------~~~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--- 118 (217)
+++.++++++.+.+..+.... ...+..++ ...+..+++|++|++++|.++..++. .+.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN-SLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS-SSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH-Hhcccc
Confidence 567777777777665443222 11222222 12233467788888888888743332 110
Q ss_pred -cccCCCCCCEEEccCCCCCccchHHhh--cCCCCCEEEccCccccCccchHhhcCCCCCCEEEc------cCCcCcccc
Q 045099 119 -SSGNLKQLKILNLGNNRLNDSILSYLN--TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDL------SGNPITGRF 189 (217)
Q Consensus 119 -~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L------~~n~l~~~~ 189 (217)
.+.++++|++|++++|.++ .+|..+. .+++|+.|++++|++++ +|. .+..+++|++|++ ++|.+.+.+
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccC
Confidence 0112338888888888888 5777776 88888888888888886 776 6778888888888 457777778
Q ss_pred cccccccCCCCCCEEeccCCCCCCCCC
Q 045099 190 IARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 190 p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
|. .+..+++|++|++++|++..+|.
T Consensus 559 p~--~l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 559 PE--GITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp CT--TGGGCSSCCEEECCSSCCCBCCS
T ss_pred hH--HHhcCCCCCEEECCCCcCCccCH
Confidence 87 78888888888888888877765
No 79
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=5.8e-15 Score=109.36 Aligned_cols=87 Identities=26% Similarity=0.303 Sum_probs=62.1
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCC
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYL 175 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 175 (217)
++|++|++++|.+++.++. .|..+++|++|+|++|+|++..+..+..+++|++|++++|++++ +|...+..+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence 6677777777777777665 67777777777777777776444455677777777777777774 444356777777
Q ss_pred CEEEccCCcCcc
Q 045099 176 QVLDLSGNPITG 187 (217)
Q Consensus 176 ~~L~L~~n~l~~ 187 (217)
++|++++|++..
T Consensus 108 ~~L~L~~N~~~c 119 (174)
T 2r9u_A 108 THIYLYNNPWDC 119 (174)
T ss_dssp SEEECCSSCBCT
T ss_pred CEEEeCCCCccc
Confidence 777777777765
No 80
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=8.3e-15 Score=121.43 Aligned_cols=120 Identities=24% Similarity=0.195 Sum_probs=93.6
Q ss_pred CceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccC
Q 045099 83 GVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEG 162 (217)
Q Consensus 83 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 162 (217)
.+..+....+..+++|++|++++|.+++..+. .|..+++|++|++++|.++...+..+..+++|++|++++|++++
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred cccccChhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 44455566788999999999999999998876 78899999999999999995444456889999999999999986
Q ss_pred ccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 163 SRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 163 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
..+ ..+..+++|++|++++|.+++.. +..+++|++|++++|.++
T Consensus 156 ~~~-~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 156 IED-DTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCT-TTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCS
T ss_pred cCh-hhccCCCCCCEEECCCCcCCccc-----cccccccceeeccccccc
Confidence 444 37889999999999999998632 233455555554444443
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=7.1e-15 Score=128.43 Aligned_cols=122 Identities=25% Similarity=0.187 Sum_probs=96.8
Q ss_pred CCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcccc
Q 045099 82 DGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIE 161 (217)
Q Consensus 82 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 161 (217)
+.+..+.+..|..+++|++|++++|.+++.++. .|..+++|++|+|++|.+++..+..+..+++|++|++++|.++
T Consensus 85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 344556666789999999999999999998886 7889999999999999999655556789999999999999998
Q ss_pred CccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099 162 GSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 162 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
+..|. .+..+++|++|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 161 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 161 RIEDD-TFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp BCCTT-TTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSE
T ss_pred CCChh-hhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCcccc
Confidence 75554 7899999999999999998742 2334555555555554443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=121.90 Aligned_cols=120 Identities=24% Similarity=0.225 Sum_probs=89.6
Q ss_pred eecCCCCCCCCCccEEECCCCcCCCc---cCcchhhcccCCCCCCEEEccCCCCCccchH----HhhcCCCCCEEEccCc
Q 045099 86 ILDLSLFPPFQELQSLDLSENWFGGV---SESKAYNSSGNLKQLKILNLGNNRLNDSILS----YLNTLTSLTTLILCDN 158 (217)
Q Consensus 86 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~l~~n 158 (217)
.+....+..+++|++|++++|.+.+. .+. ..+..+++|++|++++|.++. ++. .+..+++|++|++++|
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAA---LCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT---SCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTS
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHH---HhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCC
Confidence 34455678889999999999988763 111 034678889999999999873 232 2467889999999999
Q ss_pred cccCccchHhhcCC---CCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 159 SIEGSRTKQGLANL---RYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 159 ~l~~~~p~~~~~~l---~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
++++.+|. .+..+ ++|++|++++|+++ .+|. .+. ++|++|++++|+++++|
T Consensus 235 ~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~--~~~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 235 SLRATVNP-SAPRCMWSSALNSLNLSFAGLE-QVPK--GLP--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp CCCCCCCS-CCSSCCCCTTCCCEECCSSCCC-SCCS--CCC--SCCSCEECCSCCCCSCC
T ss_pred CCCccchh-hHHhccCcCcCCEEECCCCCCC-chhh--hhc--CCCCEEECCCCcCCCCc
Confidence 99876564 45555 68999999999988 4676 443 78889999999888865
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.4e-15 Score=117.88 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=96.3
Q ss_pred ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC---EEEccCC-CCCccchHHhhcCCCCC-EEEccCc
Q 045099 84 VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK---ILNLGNN-RLNDSILSYLNTLTSLT-TLILCDN 158 (217)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~l~~n 158 (217)
+..++...|..+++|++|++++|.+++ +| .+..+++|+ +|++++| .+++..+..+..+++|+ .|++++|
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKM-FP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCS-CC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCcc-cc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 334445566778888888888888877 33 356677777 8888888 88866666788899999 9999999
Q ss_pred cccCccchHhhcCCCCCCEEEccCCc-CcccccccccccCC-CCCCEEeccCCCCCCCCCC
Q 045099 159 SIEGSRTKQGLANLRYLQVLDLSGNP-ITGRFIARLGLSSL-RNLKRLDLSNNYGFTTPSQ 217 (217)
Q Consensus 159 ~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~l~~l-~~L~~L~l~~N~l~~~p~~ 217 (217)
+++ .+|...+.. ++|+.|++++|+ +++..+. .+..+ ++|+.|++++|+++++|++
T Consensus 167 ~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~--~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 167 GFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKD--AFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CCC-EECTTTTTT-CEEEEEECTTCTTCCEECTT--TTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHH--HhhccccCCcEEECCCCccccCChh
Confidence 998 677644544 789999999995 8865555 77888 9999999999999998863
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=4.4e-15 Score=109.98 Aligned_cols=128 Identities=26% Similarity=0.250 Sum_probs=104.8
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCC-CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQ-ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (217)
..++.++++++.+.. + +.+..+. +|++|++++|.+++. . .+..+++|++|++++|.++
T Consensus 19 ~~L~~L~l~~n~l~~-------------i--~~~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-------------I--ENLGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp TSCEEEECTTSCCCS-------------C--CCGGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCC
T ss_pred CCceEEEeeCCCCch-------------h--HHhhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCccc
Confidence 468899999998771 1 2233444 899999999999986 3 7889999999999999999
Q ss_pred ccchHHhhcCCCCCEEEccCccccCccch-HhhcCCCCCCEEEccCCcCccccccccc----ccCCCCCCEEeccCCCC
Q 045099 138 DSILSYLNTLTSLTTLILCDNSIEGSRTK-QGLANLRYLQVLDLSGNPITGRFIARLG----LSSLRNLKRLDLSNNYG 211 (217)
Q Consensus 138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~----l~~l~~L~~L~l~~N~l 211 (217)
+..+..+..+++|++|++++|+++ .+|. ..+..+++|++|++++|.++. +|. . +..+++|+.|+++.|..
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~--~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKH--YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STT--HHHHHHHHCTTCSEETTEECCH
T ss_pred ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHh--HHHHHHHHCCccceeCCCcCCH
Confidence 655455689999999999999997 4553 357889999999999999985 554 4 78899999999999864
No 85
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=111.57 Aligned_cols=123 Identities=28% Similarity=0.338 Sum_probs=102.4
Q ss_pred CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch
Q 045099 46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA 116 (217)
Q Consensus 46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 116 (217)
.|.|..+.|... ...++.++++++.+. .++ ..+..+++|++|++++|.+++..+.
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-------------~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~-- 72 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-------------LVP-KELSNYKHLTLIDLSNNRISTLSNQ-- 72 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-------------SCC-GGGGGCTTCCEEECCSSCCCCCCTT--
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-------------hhH-HHhhcccCCCEEECCCCcCCEeCHh--
Confidence 466777777531 235677777777765 222 4578899999999999999998876
Q ss_pred hhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc
Q 045099 117 YNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG 187 (217)
Q Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 187 (217)
.|..+++|++|+|++|.+++..+..|..+++|+.|++++|++++ ++...+..+++|++|++++|.+..
T Consensus 73 --~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 73 --SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp --TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred --HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeec
Confidence 78999999999999999998888889999999999999999994 665578899999999999999874
No 86
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=4.1e-15 Score=120.78 Aligned_cols=149 Identities=20% Similarity=0.243 Sum_probs=93.9
Q ss_pred CcEEEEecCCccccCCCCCCCC---------CCCceeecCCCCCCCCCccEEECCCCcCCC--ccCcchhhcccC-----
Q 045099 59 GRVTELSLNRLKHYKSSNPNNS---------SDGVIILDLSLFPPFQELQSLDLSENWFGG--VSESKAYNSSGN----- 122 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~----- 122 (217)
..++.++++++.+. .++.... .+.+..+....+..+++|++|++++|.++. ..+. .+..
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~L~~ 176 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG----AFDGLKLNY 176 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT----SSCSCCCSC
T ss_pred CCCCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc----cccCCccCE
Confidence 35667777777665 2222111 112222233345666777777777776642 2221 1111
Q ss_pred ---------------CCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcc
Q 045099 123 ---------------LKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITG 187 (217)
Q Consensus 123 ---------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 187 (217)
.++|++|++++|.+++..+..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.++
T Consensus 177 L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp CBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCC-
T ss_pred EECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCe-
Confidence 1467777777777776666677777888888888888875433 36777788888888888887
Q ss_pred cccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 188 RFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 188 ~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
.+|. .+..+++|++|++++|+++++++
T Consensus 255 ~lp~--~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 255 RVPA--GLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp BCCT--TGGGCTTCCEEECCSSCCCBCCT
T ss_pred ecCh--hhhcCccCCEEECCCCCCCccCh
Confidence 4666 67778888888888888877764
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=2.4e-15 Score=132.99 Aligned_cols=140 Identities=24% Similarity=0.216 Sum_probs=98.1
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+.+ +.+..+..+++|++|++++|.++..++. .|..+++|++|++++|.+++
T Consensus 49 ~~L~~L~Ls~n~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 49 SQLTSLDVGFNTISK-------------LEPELCQKLPMLKVLNLQHNELSQLSDK----TFAFCTNLTELHLMSNSIQK 111 (680)
T ss_dssp TTCSEEECCSSCCCC-------------CCTTHHHHCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCC
T ss_pred CcCcEEECCCCccCc-------------cCHHHHhcccCcCEEECCCCccCccChh----hhccCCCCCEEECCCCccCc
Confidence 467888888887763 2334456677788888888877776654 57777788888888887776
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+.......+++|++|++++|+++++++
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 112 IKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 5566777778888888888877765443 5677778888888888777655441112345777888888887777654
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=1.2e-14 Score=126.06 Aligned_cols=119 Identities=24% Similarity=0.277 Sum_probs=75.8
Q ss_pred CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchH-HhhcCCCCCEEEccCccccCccchHh
Q 045099 90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILS-YLNTLTSLTTLILCDNSIEGSRTKQG 168 (217)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~ 168 (217)
..+..+++|++|++++|.+++..+. +..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|. .
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 447 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKV--ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-C 447 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHH--HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-S
T ss_pred hhhcccCCCCEEECCCCCcCCcccc--hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-h
Confidence 3455566666666666666653210 01455666666666666666653443 355566666666666666654332 1
Q ss_pred hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+. ++|++|++++|+++. +|. .+..+++|++|++++|+++++|+
T Consensus 448 l~--~~L~~L~L~~N~l~~-ip~--~~~~l~~L~~L~L~~N~l~~l~~ 490 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIMS-IPK--DVTHLQALQELNVASNQLKSVPD 490 (562)
T ss_dssp CC--TTCSEEECCSSCCCC-CCT--TTTSSCCCSEEECCSSCCCCCCT
T ss_pred hc--CcCCEEECCCCcCcc-cCh--hhcCCCCCCEEECCCCCCCCCCH
Confidence 21 577888888887774 666 56688888899999988888875
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=7.2e-15 Score=125.53 Aligned_cols=113 Identities=22% Similarity=0.087 Sum_probs=98.2
Q ss_pred CCCCCCCCCccEEECCCCcCCCccCcchhhccc-CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchH
Q 045099 89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSG-NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQ 167 (217)
Q Consensus 89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 167 (217)
+..+..+++|++|++++|.+++.++. .+. .+++|++|+|++|.+++.. ....+++|+.|++++|.+++ +|+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~- 208 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGP- 208 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECG-
T ss_pred chhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCH-
Confidence 44567789999999999999998776 554 7899999999999999753 23468999999999999996 555
Q ss_pred hhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 168 GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
.+..+++|+.|++++|.+++ +|. .+..+++|+.|++++|.+.
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECT--TCCCCTTCCEEECTTCCBC
T ss_pred hHcCCCCccEEEecCCcCcc-cch--hhccCCCCCEEEcCCCCCc
Confidence 58899999999999999997 777 7889999999999999986
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.1e-14 Score=114.71 Aligned_cols=127 Identities=34% Similarity=0.329 Sum_probs=101.7
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+.+ +.. +..+++|++|++++|.+++.. .+..+++|++|++++|.+++
T Consensus 68 ~~L~~L~L~~n~l~~-------------~~~--l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTD-------------IKP--LANLKNLGWLFLDENKVKDLS------SLKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp TTCCEEECCSSCCCC-------------CGG--GTTCTTCCEEECCSSCCCCGG------GGTTCTTCCEEECTTSCCCC
T ss_pred CCCCEEEccCCccCC-------------Ccc--cccCCCCCEEECCCCcCCCCh------hhccCCCCCEEECCCCcCCC
Confidence 356666666666551 112 678899999999999988742 57889999999999999986
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
. ..+..+++|+.|++++|++++ ++ .+..+++|++|++++|.+++.. .+..+++|++|++++|++++++
T Consensus 127 ~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 127 I--NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp C--GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCBCG
T ss_pred C--hhhcCCCCCCEEEccCCcCCc-ch--hhccCCCCCEEEccCCccccch----hhcCCCccCEEECCCCcCCCCh
Confidence 3 467889999999999999985 43 5888999999999999998743 3678999999999999998764
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.58 E-value=1.2e-15 Score=131.58 Aligned_cols=137 Identities=25% Similarity=0.282 Sum_probs=108.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. .+.+..|..+++|++|++++|.+++.++. .|..+++|++|++++|.+++
T Consensus 50 ~~L~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 50 ANLQVLILKSSRIN-------------TIEGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSS
T ss_pred CcccEEECCCCCcC-------------ccChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccc
Confidence 47888999988876 34456688889999999999999887775 68889999999999999885
Q ss_pred -cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccC--------------------
Q 045099 139 -SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS-------------------- 197 (217)
Q Consensus 139 -~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~-------------------- 197 (217)
..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.+|. .+..
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~ 190 (549)
T 2z81_A 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSIRDIHHLTLHLSESAFLLEI 190 (549)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSBSTTHHHH
T ss_pred cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh--hhhccccCceEecccCcccccchh
Confidence 34567888899999999999855567655688888999999999988876665 4443
Q ss_pred ----CCCCCEEeccCCCCCCC
Q 045099 198 ----LRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 198 ----l~~L~~L~l~~N~l~~~ 214 (217)
+++|++|++++|++++.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 191 FADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp HHHSTTTBSEEEEESCBCTTC
T ss_pred hHhhcccccEEEccCCccccc
Confidence 56777777777777764
No 92
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=7.2e-15 Score=127.66 Aligned_cols=108 Identities=29% Similarity=0.299 Sum_probs=99.1
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ 176 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 176 (217)
.|+.|++++|.+++. | .+..+++|+.|+|++|.++ .+|..++.+++|+.|++++|++++ +| .+..+++|+
T Consensus 442 ~L~~L~Ls~n~l~~l-p-----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-C-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSSC-C-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCC
T ss_pred CceEEEecCCCCCCC-c-----CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCc
Confidence 588999999999984 4 5788999999999999999 789999999999999999999996 66 589999999
Q ss_pred EEEccCCcCcccc-cccccccCCCCCCEEeccCCCCCCCCC
Q 045099 177 VLDLSGNPITGRF-IARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 177 ~L~L~~n~l~~~~-p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+|+|++|.+++.. |. .+..+++|+.|+|++|+++++|+
T Consensus 512 ~L~Ls~N~l~~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQ--PLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EEECCSSCCCSSSTTG--GGGGCTTCCEEECTTSGGGGSSS
T ss_pred EEECCCCCCCCCCCcH--HHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999999876 88 89999999999999999999876
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=8.2e-15 Score=127.04 Aligned_cols=148 Identities=23% Similarity=0.231 Sum_probs=113.5
Q ss_pred CCcEEEEecCCccccCCCCCCCCC-CCceeecC------------CCCCCCCCccEEECCCCcCCCccCcchhhcccCCC
Q 045099 58 AGRVTELSLNRLKHYKSSNPNNSS-DGVIILDL------------SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLK 124 (217)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~ 124 (217)
...++.++++++.+.+..+..... ..+..+.. ..+..+++|++|++++|.+++.+|.. .+..++
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~~l~ 428 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR---TCAWAE 428 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC---CCCCCT
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh---hhcCcc
Confidence 457888899988888754433211 12222211 24678899999999999999854431 577889
Q ss_pred CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEE
Q 045099 125 QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204 (217)
Q Consensus 125 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L 204 (217)
+|++|++++|.+++.+|..+. ++|+.|++++|+++ .+|. .+..+++|++|++++|+++. +|.. .+..+++|+.|
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L 502 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK-DVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYI 502 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT-TTTSSCCCSEEECCSSCCCC-CCTT-STTTCTTCCCE
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh-hhcCCCCCCEEECCCCCCCC-CCHH-HHhcCCCCCEE
Confidence 999999999999887766543 68999999999998 6887 45689999999999999995 5651 38899999999
Q ss_pred eccCCCCCCC
Q 045099 205 DLSNNYGFTT 214 (217)
Q Consensus 205 ~l~~N~l~~~ 214 (217)
++++|.+.+.
T Consensus 503 ~l~~N~~~c~ 512 (562)
T 3a79_B 503 WLHDNPWDCT 512 (562)
T ss_dssp ECCSCCBCCC
T ss_pred EecCCCcCCC
Confidence 9999998763
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.7e-14 Score=114.17 Aligned_cols=127 Identities=36% Similarity=0.419 Sum_probs=90.0
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. . .+.+..+++|++|++++|.+++. + .+..+++|++|++++|.+++
T Consensus 90 ~~L~~L~l~~n~l~----------~-----~~~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 90 KNLGWLFLDENKVK----------D-----LSSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp TTCCEEECCSSCCC----------C-----GGGGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCC----------C-----ChhhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCc
Confidence 35666677766655 1 12366777888888888887774 2 56677888888888888875
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
. ..+..+++|+.|++++|++++ +++ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++..|
T Consensus 149 ~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~~-l~---~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 149 I--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD-LR---ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB-CG---GGTTCTTCSEEEEEEEEEECCC
T ss_pred c--hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCCC-Ch---hhccCCCCCEEECcCCcccCCc
Confidence 4 467777888888888888875 333 6777888888888888776 33 4677788888888888776544
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=5.6e-15 Score=119.36 Aligned_cols=111 Identities=21% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHh-hcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYL-NTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++ ++. ...++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~--~~~l~ 191 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG--QVVFA 191 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGB----CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC--CCCCT
T ss_pred cCCCCEEECCCCCCCCccch----hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc--ccccc
Confidence 44556666666666555444 44555555555555555555444443 244555555555555542 222 22344
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
+|++|++++|.+++ +|. .+..+++|++|++++|+++++|
T Consensus 192 ~L~~L~Ls~N~l~~-l~~--~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 192 KLKTLDLSSNKLAF-MGP--EFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp TCCEEECCSSCCCE-ECG--GGGGGTTCSEEECTTSCCCEEC
T ss_pred cCCEEECCCCcCCc-chh--hhcccCcccEEECcCCcccchh
Confidence 55555555555553 233 3444455555555555544443
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=3.2e-14 Score=114.60 Aligned_cols=109 Identities=29% Similarity=0.349 Sum_probs=61.9
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|++++|.+++.. .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++ ++. +..
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~ 171 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--LAN 171 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTT
T ss_pred hcCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--hcC
Confidence 455566666666666665532 34556666666666666654322 5556666666666666653 332 555
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
+++|+.|++++|.+++. + .+..+++|++|++++|++++++
T Consensus 172 l~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDI-S---PLASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CTTCCEEECCSSCCCCC-G---GGGGCTTCCEEECTTSCCCBCG
T ss_pred CCCCCEEECCCCccCcC-h---hhcCCCCCCEEEccCCccCccc
Confidence 66666666666666542 2 2455566666666666665543
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=3.7e-14 Score=114.16 Aligned_cols=128 Identities=25% Similarity=0.297 Sum_probs=104.5
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. .+.. +..+++|++|++++|.+++.. .+..+++|++|++++|.+++
T Consensus 63 ~~L~~L~L~~n~i~-------------~~~~--~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 63 NNLIGLELKDNQIT-------------DLAP--LKNLTKITELELSGNPLKNVS------AIAGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp TTCCEEECCSSCCC-------------CCGG--GTTCCSCCEEECCSCCCSCCG------GGTTCTTCCEEECTTSCCCC
T ss_pred CCCCEEEccCCcCC-------------CChh--HccCCCCCEEEccCCcCCCch------hhcCCCCCCEEECCCCCCCC
Confidence 35667777777665 1122 778899999999999998752 67889999999999999986
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
. +. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. + .+..+++|+.|++++|+++++++
T Consensus 122 ~-~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~-~---~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 122 V-TP-LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVSDL-T---PLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp C-GG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC-G---GGTTCTTCCEEECCSSCCCCCGG
T ss_pred c-hh-hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCCcCCCC-h---hhcCCCCCCEEECCCCccCcChh
Confidence 4 33 8899999999999999985 443 78899999999999999973 3 36889999999999999988763
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=7e-15 Score=133.24 Aligned_cols=117 Identities=24% Similarity=0.201 Sum_probs=69.6
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++++++...+ .+.+..|..+++|++|++++|.+++..|. .|.++++|++|+|++|.+++
T Consensus 48 ~~L~~LdLs~n~~~~------------~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 48 EQLQLLELGSQYTPL------------TIDKEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp CSCSEEEECTTCCCC------------EECTTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSS
T ss_pred ccCeEEeCCCCCCcc------------ccCHHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCc
Confidence 456778888775442 23344556666666666666666665555 56666666666666666665
Q ss_pred cchHH--hhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccc
Q 045099 139 SILSY--LNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIA 191 (217)
Q Consensus 139 ~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 191 (217)
.+|.. +..+++|++|++++|.+++..+...+.++++|++|++++|.+++..+.
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 44443 556666666666666665443322456666666666666666554443
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=1.9e-14 Score=116.20 Aligned_cols=115 Identities=23% Similarity=0.096 Sum_probs=97.8
Q ss_pred ecCCCCCCCCCccEEECCCCcCCCccCcchhhcc-cCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099 87 LDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS-GNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT 165 (217)
Q Consensus 87 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 165 (217)
+....+..+++|++|++++|.+++..+. .+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence 3344567789999999999999997765 44 4789999999999999865 3 23458999999999999985 66
Q ss_pred hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
. .+..+++|++|++++|.++. +|. .+..+++|+.|++++|.+.
T Consensus 208 ~-~~~~l~~L~~L~L~~N~l~~-l~~--~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 P-EFQSAAGVTWISLRNNKLVL-IEK--ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp G-GGGGGTTCSEEECTTSCCCE-ECT--TCCCCTTCCEEECTTCCCB
T ss_pred h-hhcccCcccEEECcCCcccc-hhh--HhhcCCCCCEEEccCCCcc
Confidence 5 58899999999999999995 787 7889999999999999986
No 100
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2.3e-14 Score=106.06 Aligned_cols=128 Identities=26% Similarity=0.326 Sum_probs=106.4
Q ss_pred CCccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcc
Q 045099 45 DCCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESK 115 (217)
Q Consensus 45 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 115 (217)
-.|.|.++.|... ...++.++++++.+. .+....+..+++|++|++++|.+++..+.
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 70 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-------------SLPHGVFDKLTQLTKLSLSQNQIQSLPDG- 70 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCC-------------CCCTTTTTTCTTCSEEECCSSCCCCCCTT-
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCccc-------------EeCHHHhcCcccccEEECCCCcceEeChh-
Confidence 4578999999642 246778888887766 23445678899999999999999987775
Q ss_pred hhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc
Q 045099 116 AYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI 190 (217)
Q Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 190 (217)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ +|...+..+++|++|++++|++++..+
T Consensus 71 ---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 71 ---VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccCc
Confidence 67899999999999999997777778899999999999999985 665467889999999999999997654
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=3e-14 Score=112.27 Aligned_cols=126 Identities=29% Similarity=0.396 Sum_probs=97.9
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++++++.+.+ +.. +..+++|++|++++|.+++..+ +.. ++|++|++++|.+++
T Consensus 63 ~~L~~L~L~~N~i~~-------------~~~--l~~l~~L~~L~L~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 63 TNLKELHLSHNQISD-------------LSP--LKDLTKLEELSVNRNRLKNLNG------IPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp TTCCEEECCSSCCCC-------------CGG--GTTCSSCCEEECCSSCCSCCTT------CCC-SSCCEEECCSSCCSB
T ss_pred CCCCEEECCCCccCC-------------Chh--hccCCCCCEEECCCCccCCcCc------ccc-CcccEEEccCCccCC
Confidence 356666676666551 122 6788889999999998888543 233 889999999999986
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
. +.+..+++|+.|++++|++++ ++ .+..+++|++|++++|.+++. . .+..+++|+.|++++|.++..|
T Consensus 121 ~--~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~--~--~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 121 T--DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT--G--GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp S--GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC--T--TSTTCCCCCEEEEEEEEEECCC
T ss_pred C--hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch--H--HhccCCCCCEEeCCCCcccCCc
Confidence 3 358889999999999999985 44 478889999999999999875 4 6788999999999999887664
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=4.8e-14 Score=123.31 Aligned_cols=141 Identities=36% Similarity=0.402 Sum_probs=101.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceee--------cCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEE
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIIL--------DLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILN 130 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~ 130 (217)
..++.|+++++.+.+..+ ......+..+ ..+.+..+++|++|+|++|.+++. + .+..+++|+.|+
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~ 137 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCSEEE
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC-c-----cccCCCccCEEE
Confidence 467778888877664321 0000111111 123567788888888888888874 2 577888888888
Q ss_pred ccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCC
Q 045099 131 LGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNY 210 (217)
Q Consensus 131 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~ 210 (217)
|++|.+++. ..+..+++|+.|+|++|.+++. ++ +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|+
T Consensus 138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~i~~-l~---~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSKNHISD-LR---ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCB-CG---GGTTCTTCSEEECCSEE
T ss_pred CCCCccCCc--hhhcccCCCCEEECcCCcCCCc-hh--hccCCCCCEEECcCCCCCC-Ch---HHccCCCCCEEEccCCc
Confidence 888888864 5678888888888888888854 33 7788888999999888886 33 57788889999999888
Q ss_pred CCCCC
Q 045099 211 GFTTP 215 (217)
Q Consensus 211 l~~~p 215 (217)
+++.|
T Consensus 209 l~~~p 213 (605)
T 1m9s_A 209 CLNKP 213 (605)
T ss_dssp EECCC
T ss_pred CcCCc
Confidence 87765
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=3e-14 Score=129.04 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=96.2
Q ss_pred cEEEEecCCccccCCCCCCC------CCCCceeecC----------CCCCCCCCccEEECCCCcCCCccCcchhhc----
Q 045099 60 RVTELSLNRLKHYKSSNPNN------SSDGVIILDL----------SLFPPFQELQSLDLSENWFGGVSESKAYNS---- 119 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---- 119 (217)
++..++++++.+.+..+... ....+..++. ..+..+++|++|++++|.++..+.. .+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN-SLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT-SSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH-Hhcccccc
Confidence 37778888887776443211 0012222221 1223567788888888877743332 1100
Q ss_pred ccCCCCCCEEEccCCCCCccchHHhh--cCCCCCEEEccCccccCccchHhhcCCCCCCEEEccC------CcCcccccc
Q 045099 120 SGNLKQLKILNLGNNRLNDSILSYLN--TLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSG------NPITGRFIA 191 (217)
Q Consensus 120 ~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~------n~l~~~~p~ 191 (217)
+.++++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|. .+..+++|+.|+|++ |.+.+.+|.
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch-hhhcCCCCCEEECCCCCCcccccccccChH
Confidence 112337888888888887 5676665 77888888888888875 665 567778888887765 667777777
Q ss_pred cccccCCCCCCEEeccCCCCCCCCC
Q 045099 192 RLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 192 ~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
.+..+++|+.|+|++|++..+|.
T Consensus 801 --~l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 801 --GITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp --TGGGCSSCCEEECCSSCCCBCCS
T ss_pred --HHhcCCCCCEEECCCCCCCccCH
Confidence 77778888888888888766664
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.5e-14 Score=107.07 Aligned_cols=116 Identities=21% Similarity=0.154 Sum_probs=95.9
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCC-CCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLK-QLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 169 (217)
.+..+.+|++|++++|.++.. + .+..+. +|++|++++|.+++. ..+..+++|++|++++|++++ +|+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~-----~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-E-----NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-C-----CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred hcCCcCCceEEEeeCCCCchh-H-----HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchh
Confidence 355688999999999999965 4 344554 999999999999964 678889999999999999985 554356
Q ss_pred cCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+++|++|++++|.++. +|....+..+++|+.|++++|.++.+|.
T Consensus 85 ~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp HHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred hcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 889999999999999976 3421157889999999999999987764
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=6.1e-14 Score=110.50 Aligned_cols=125 Identities=26% Similarity=0.351 Sum_probs=104.6
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+. . .+.+..+++|++|++++|.+++..+ +..+++|++|++++|++++
T Consensus 41 ~~L~~L~l~~n~i~-------------~--l~~l~~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-------------S--LAGMQFFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp TTCSEEECTTSCCC-------------C--CTTGGGCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSC
T ss_pred CcCcEEECcCCCcc-------------c--chHHhhCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCC
Confidence 46778889888776 1 1256788999999999999998653 6789999999999999986
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+|. +.. ++|+.|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|+++++
T Consensus 100 -l~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-~---~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 100 -LNG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI-V---MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp -CTT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-G---GGGGCTTCCEEECTTSCCCBC
T ss_pred -cCc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-h---HHccCCCCCEEECCCCcCcch
Confidence 443 233 899999999999985 54 488999999999999999974 3 578899999999999999876
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=1e-13 Score=121.27 Aligned_cols=109 Identities=34% Similarity=0.346 Sum_probs=85.4
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|+.|+|++|.+++.. .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++ ++ .+..
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~ 151 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-IT--VLSR 151 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG--GGGS
T ss_pred hccCCCCCEEECcCCCCCCCh------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-ch--hhcc
Confidence 566778888888888877632 567888888888888888853 457788888888888888885 43 5788
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
+++|+.|+|++|.+++..| +..+++|+.|+|++|++++++
T Consensus 152 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp CTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBCG
T ss_pred cCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCCh
Confidence 8888999998888887433 577888999999998888764
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.52 E-value=9.9e-14 Score=112.98 Aligned_cols=111 Identities=30% Similarity=0.333 Sum_probs=65.6
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|++++|.+++.. .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++ ++ .+..
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--~~~~ 285 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLS------PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS--VLNN 285 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred hhcCCcCCEEEccCCccCCCc------chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch--hhcC
Confidence 445566666666666665543 244566666666666666542 345556666666666666653 32 3555
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
+++|++|++++|.+++..+. .+..+++|++|++++|++++++
T Consensus 286 l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDME--VIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHH--HHHTCTTCSEEECCSSSCCCCG
T ss_pred CCCCCEEECcCCcCCCcChh--HhhccccCCEEEccCCcccccc
Confidence 66666666666666655555 5566666666666666666554
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.51 E-value=1.5e-13 Score=111.93 Aligned_cols=108 Identities=30% Similarity=0.418 Sum_probs=93.0
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|++++|.+++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+. .+..
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~ 309 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI-N-----AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGG 309 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHT
T ss_pred hhcCCCCCEEECCCCccCCC-h-----hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-Hhhc
Confidence 77899999999999999885 2 678999999999999999864 4588999999999999999865554 7899
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 310 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence 9999999999999998544 578999999999999986
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=7.6e-14 Score=121.22 Aligned_cols=124 Identities=23% Similarity=0.272 Sum_probs=102.8
Q ss_pred cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099 60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS 139 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 139 (217)
.++.++++++.+.+ + +.+..+++|++|++++|.++ .+|. .+..+++|++|+|++|.+++
T Consensus 442 ~L~~L~Ls~n~l~~-------------l--p~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-------------L--CHLEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp TCSEEECTTSCCSS-------------C--CCGGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCCC-
T ss_pred CceEEEecCCCCCC-------------C--cCccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCCC-
Confidence 46678898888772 2 12788999999999999999 4565 88999999999999999997
Q ss_pred chHHhhcCCCCCEEEccCccccCcc-chHhhcCCCCCCEEEccCCcCcccccccc-cccCCCCCCEEec
Q 045099 140 ILSYLNTLTSLTTLILCDNSIEGSR-TKQGLANLRYLQVLDLSGNPITGRFIARL-GLSSLRNLKRLDL 206 (217)
Q Consensus 140 ~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~l~~l~~L~~L~l 206 (217)
+| .++.+++|+.|++++|++++.. |. .+..+++|+.|+|++|++++.+|... .+..+++|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 67 8999999999999999999754 65 79999999999999999998654311 2344899999874
No 110
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.9e-13 Score=100.74 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=88.4
Q ss_pred ccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCE
Q 045099 98 LQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQV 177 (217)
Q Consensus 98 L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 177 (217)
.+.+++++|.++..+. .+ .++|++|+|++|.+++..|..+..+++|++|++++|++++ ++...+..+++|++
T Consensus 11 ~~~l~~s~n~l~~ip~-----~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT-----GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccCc-----cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCE
Confidence 4678888888877543 33 3788999999999998778888899999999999999985 55546788999999
Q ss_pred EEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 178 LDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 178 L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
|+|++|++++..+. .+..+++|++|+|++|.+...+
T Consensus 83 L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDNQLKSIPRG--AFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCCccCEeCHH--HhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999986665 6888999999999999887654
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=2.4e-15 Score=134.15 Aligned_cols=92 Identities=28% Similarity=0.399 Sum_probs=83.6
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|+|++|.|+ .+|. .|..+++|++|+|++|.|+ .+|..++.+++|++|+|++|.++ .+|. .+..
T Consensus 243 ~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~ 314 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGN 314 (727)
T ss_dssp GGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTS
T ss_pred hcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhc
Confidence 347899999999999999 5565 7899999999999999999 78999999999999999999997 6887 6999
Q ss_pred CCCCCEEEccCCcCcccccc
Q 045099 172 LRYLQVLDLSGNPITGRFIA 191 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~ 191 (217)
+++|++|+|++|.+++.+|.
T Consensus 315 l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHH
T ss_pred CCCccEEeCCCCccCCCChH
Confidence 99999999999999987776
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=4.7e-14 Score=122.43 Aligned_cols=154 Identities=23% Similarity=0.246 Sum_probs=108.1
Q ss_pred ccCCCcCCCCCCCc-----cccce-EEcCCCCcEEEEecCCccccCCCCCCCCCCCceeecCC--CC----CCCCCccEE
Q 045099 34 ILTSWVDDGISDCC-----DWERL-KCNATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS--LF----PPFQELQSL 101 (217)
Q Consensus 34 ~l~~W~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~l~~L~~L 101 (217)
.+.+|.. ...+| .|.++ .|.. .+++.++++++.+.+ ++.... ..+..++.. .+ ..+++|++|
T Consensus 32 ~l~~W~~--~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~~ip~~l~~L~~L 105 (571)
T 3cvr_A 32 AWDKWEK--QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALISLPELPASLEYL 105 (571)
T ss_dssp HHHHHHT--TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCSCCCCCCTTCCEE
T ss_pred HHHHHhc--cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCcccccccCCCCEE
Confidence 4566865 34667 69999 6853 478899999999875 433221 122222111 00 346788888
Q ss_pred ECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEcc
Q 045099 102 DLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181 (217)
Q Consensus 102 ~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~ 181 (217)
++++|.+++ +| .+.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|+++
T Consensus 106 ~Ls~N~l~~-ip-----~l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls 168 (571)
T 3cvr_A 106 DACDNRLST-LP-----ELPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVR 168 (571)
T ss_dssp ECCSSCCSC-CC-----CCCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECC
T ss_pred EccCCCCCC-cc-----hhhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECC
Confidence 888888887 44 2222 88888888888886 555 57888899999998885 664 46788999999
Q ss_pred CCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 182 GNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 182 ~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+|.+++ +|. +. ++|+.|+|++|+|+.+|.
T Consensus 169 ~N~L~~-lp~---l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 169 NNQLTF-LPE---LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SSCCSC-CCC---CC--TTCCEEECCSSCCSSCCC
T ss_pred CCCCCC-cch---hh--CCCCEEECcCCCCCchhh
Confidence 998887 564 33 789999999999888764
No 113
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=3.2e-13 Score=99.89 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=91.0
Q ss_pred cEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEE
Q 045099 99 QSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVL 178 (217)
Q Consensus 99 ~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L 178 (217)
+.+++++|.++..+. .+ .++|++|+|++|.+++..|..+..+++|++|+|++|++++ +|...+..+++|++|
T Consensus 15 ~~l~~~~n~l~~iP~-----~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-----GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCCS-----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccCC-----Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEE
Confidence 678888888866443 33 3789999999999998888889999999999999999985 665467889999999
Q ss_pred EccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 179 DLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 179 ~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+|++|++++..+. .+..+++|++|+|++|.+...++
T Consensus 87 ~L~~N~l~~l~~~--~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 87 DLNDNHLKSIPRG--AFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp ECCSSCCCCCCTT--TTTTCTTCSEEECCSSCBCTTBG
T ss_pred ECCCCccceeCHH--HhccccCCCEEEeCCCCcccccc
Confidence 9999999975555 68899999999999999886653
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=4e-13 Score=113.90 Aligned_cols=107 Identities=29% Similarity=0.392 Sum_probs=55.8
Q ss_pred CCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCC
Q 045099 94 PFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 94 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
.+++|++|++++|.+++.. .+..+++|++|++++|.+++..| +..+++|+.|++++|.+++ ++ .+..++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~ 353 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLANLT 353 (466)
T ss_dssp TCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred CCCccCeEEcCCCcccCch------hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhccCC
Confidence 3444444444444444422 23445555555555555554433 4455555555555555553 22 355556
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
+|++|++++|++++..| +..+++|+.|++++|.++++|
T Consensus 354 ~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP----LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TCCEEECCSSCCCBCGG----GTTCTTCCEEECCCEEEECCC
T ss_pred CCCEEeCCCCccCccch----hhcCCCCCEEeccCCcccCCc
Confidence 66666666666655433 345566666666666666544
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.47 E-value=3.7e-13 Score=114.10 Aligned_cols=128 Identities=25% Similarity=0.290 Sum_probs=108.2
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
.+++.++++++.+.+. ..+..+++|++|++++|.+++.. .+..+++|++|++++|.+++
T Consensus 243 ~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 243 TNLTDLDLANNQISNL---------------APLSGLTKLTELKLGANQISNIS------PLAGLTALTNLELNENQLED 301 (466)
T ss_dssp TTCSEEECCSSCCCCC---------------GGGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCSC
T ss_pred CCCCEEECCCCccccc---------------hhhhcCCCCCEEECCCCccCccc------cccCCCccCeEEcCCCcccC
Confidence 4677888888877621 12678899999999999999865 36789999999999999997
Q ss_pred cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 139 SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 139 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. . .+..+++|+.|++++|++++.+|
T Consensus 302 ~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 302 ISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--S--SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--G--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred chh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--h--hhccCCCCCEEeCCCCccCccch
Confidence 554 7899999999999999996443 67899999999999999974 3 67899999999999999988764
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=1.2e-14 Score=117.90 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=95.2
Q ss_pred CCCCCCccEEECCCCcCCCc-cCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCc-cccCc-cchHh
Q 045099 92 FPPFQELQSLDLSENWFGGV-SESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN-SIEGS-RTKQG 168 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~ 168 (217)
+..+++|++|++++|.+++. .+. .+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++. .
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~ 163 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-L 163 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-H
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-H
Confidence 45689999999999998765 444 6788999999999999999888999999999999999999 67753 443 5
Q ss_pred hcCCCCCCEEEccCC-cCccc-ccccccccCCC-CCCEEeccCCC
Q 045099 169 LANLRYLQVLDLSGN-PITGR-FIARLGLSSLR-NLKRLDLSNNY 210 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n-~l~~~-~p~~~~l~~l~-~L~~L~l~~N~ 210 (217)
+..+++|++|++++| .+++. ++. .+..++ +|++|++++|.
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQV--AVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHH--HHHHSCTTCCEEECCSCG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHH--HHHhcccCCCEEEeCCCc
Confidence 788999999999999 88864 565 678899 99999999994
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=1.8e-13 Score=111.99 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=84.9
Q ss_pred CccccceEEcCC---------CCcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcch
Q 045099 46 CCDWERLKCNAT---------AGRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKA 116 (217)
Q Consensus 46 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 116 (217)
.|.+..|.|... ...++.++++++.+. .++...|..+++|++|+|++|.+.+.++..
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-------------~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~- 73 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-------------VIQKGAFSGFGDLEKIEISQNDVLEVIEAD- 73 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-------------EECTTSSTTCTTCCEEEEECCTTCCEECTT-
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-------------CcCHHHHcCCCCCCEEECcCCCCCCccChh-
Confidence 378889999641 235677888887766 566677899999999999999987766542
Q ss_pred hhcccCCCCCCE-EEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEcc
Q 045099 117 YNSSGNLKQLKI-LNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181 (217)
Q Consensus 117 ~~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~ 181 (217)
.|.+++++++ +.+..|+++...|..+..+++|++|++++|+++. ++...+....++..+++.
T Consensus 74 --~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 74 --VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp --SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEE
T ss_pred --HhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhc
Confidence 5777888776 4566788887767788889999999999988874 333233333344444443
No 118
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=6.5e-13 Score=108.31 Aligned_cols=90 Identities=23% Similarity=0.265 Sum_probs=79.4
Q ss_pred CCCCCCccEEECCC-CcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 92 FPPFQELQSLDLSE-NWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 92 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
+..+.+|++|+|++ |.+++.++. .|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++ +|...+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence 77888999999996 999998877 78999999999999999999888899999999999999999985 5654565
Q ss_pred CCCCCCEEEccCCcCcc
Q 045099 171 NLRYLQVLDLSGNPITG 187 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~ 187 (217)
.++ |+.|+|.+|.+..
T Consensus 102 ~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-CCEEECCSSCCCC
T ss_pred cCC-ceEEEeeCCCccC
Confidence 555 9999999999884
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.7e-13 Score=111.10 Aligned_cols=148 Identities=20% Similarity=0.165 Sum_probs=112.7
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecC-----------CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDL-----------SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLK 127 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~ 127 (217)
..++.+++.++.+.+..+.......+..++. ..+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCS
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCC
Confidence 3566677777776655444332233333322 2356789999999999998877666 788899999
Q ss_pred EEEccCC-CCCcc-chHHhhcCCCCCEEEccCc-cccCc-cchHhhcCCC-CCCEEEccCC--cCc-ccccccccccCCC
Q 045099 128 ILNLGNN-RLNDS-ILSYLNTLTSLTTLILCDN-SIEGS-RTKQGLANLR-YLQVLDLSGN--PIT-GRFIARLGLSSLR 199 (217)
Q Consensus 128 ~L~L~~n-~l~~~-~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~~~l~~l~ 199 (217)
+|++++| .+++. ++..+..+++|++|++++| .+++. ++. .+..++ +|++|++++| .++ +.++. .+..++
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~--~~~~~~ 222 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLST--LVRRCP 222 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHH--HHHHCT
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHH--HHhhCC
Confidence 9999999 78864 6777889999999999999 88854 443 678899 9999999999 566 44666 778899
Q ss_pred CCCEEeccCCC-CCC
Q 045099 200 NLKRLDLSNNY-GFT 213 (217)
Q Consensus 200 ~L~~L~l~~N~-l~~ 213 (217)
+|++|++++|. +++
T Consensus 223 ~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 223 NLVHLDLSDSVMLKN 237 (336)
T ss_dssp TCSEEECTTCTTCCG
T ss_pred CCCEEeCCCCCcCCH
Confidence 99999999998 553
No 120
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.3e-12 Score=106.62 Aligned_cols=106 Identities=20% Similarity=0.157 Sum_probs=88.7
Q ss_pred cEEECCCC-cCCCccCcchhhcccCCCCCCEEEccC-CCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC
Q 045099 99 QSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGN-NRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ 176 (217)
Q Consensus 99 ~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 176 (217)
..++++++ .++. +| .+..+++|++|+|++ |.|++..+..|..+++|+.|+|++|+|++..|. .|..+++|+
T Consensus 11 ~~v~~~~~n~l~~-ip-----~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LH-----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT-TT-----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCC
T ss_pred CEEEcCCCCCCCc-cC-----CCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-HhcCCcCCC
Confidence 45688887 7876 34 367888999999996 999988788899999999999999999975554 789999999
Q ss_pred EEEccCCcCcccccccccccCCCCCCEEeccCCCCCCC
Q 045099 177 VLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 177 ~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+|+|++|++++..+. .+..++ |+.|+|++|+|...
T Consensus 84 ~L~l~~N~l~~~~~~--~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 84 RLNLSFNALESLSWK--TVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EEECCSSCCSCCCST--TTCSCC-CCEEECCSSCCCCC
T ss_pred EEeCCCCccceeCHH--HcccCC-ceEEEeeCCCccCC
Confidence 999999999985554 555555 99999999998743
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=5.1e-16 Score=117.25 Aligned_cols=91 Identities=24% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|++++|.++.. |. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|++++..+...+..
T Consensus 66 ~~~l~~L~~L~l~~n~l~~l-~~----~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKKI-EN----LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA 138 (198)
T ss_dssp HHHHTTCCEEEEEEEEECSC-SS----HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTT
T ss_pred cccCCCCCEEECCCCCcccc-cc----hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhc
Confidence 34455555666655555532 22 33444556666666666554 23 35555556666666666553111123555
Q ss_pred CCCCCEEEccCCcCcccc
Q 045099 172 LRYLQVLDLSGNPITGRF 189 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~ 189 (217)
+++|++|++++|.+++.+
T Consensus 139 l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp TTTCSEEEECSCHHHHHH
T ss_pred CCCCCEEEecCCcccccc
Confidence 566666666666655543
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.3e-13 Score=114.04 Aligned_cols=121 Identities=19% Similarity=0.178 Sum_probs=93.6
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhh-cccCCCCCCEEEccCCCCC----ccchHHhhcCCCCCEEEccCccccCc---
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYN-SSGNLKQLKILNLGNNRLN----DSILSYLNTLTSLTTLILCDNSIEGS--- 163 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~~--- 163 (217)
+..+++|++|++++|.++......+.. .+..+++|++|+|++|.++ ..+|..+..+++|+.|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 345778999999999887321111111 5678899999999999996 56788888999999999999999854
Q ss_pred -cchHhh--cCCCCCCEEEccCCcCcc----cccccccc-cCCCCCCEEeccCCCCCCCC
Q 045099 164 -RTKQGL--ANLRYLQVLDLSGNPITG----RFIARLGL-SSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 164 -~p~~~~--~~l~~L~~L~L~~n~l~~----~~p~~~~l-~~l~~L~~L~l~~N~l~~~p 215 (217)
++. .+ ..+++|++|+|++|.+++ .+|. .+ .++++|++|++++|++++..
T Consensus 263 ~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKT--VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHH--HHHhcCCCceEEEccCCcCCcch
Confidence 333 45 348999999999999998 4676 55 66899999999999998764
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=1.9e-13 Score=112.30 Aligned_cols=118 Identities=27% Similarity=0.312 Sum_probs=75.3
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCC-CCCCEEEccCCCCCccchHHhhc-----CCCCCEEEccCccccCccch---
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNL-KQLKILNLGNNRLNDSILSYLNT-----LTSLTTLILCDNSIEGSRTK--- 166 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~~p~--- 166 (217)
++|++|++++|.+++..+..+...+..+ ++|++|++++|.+++..+..+.. ..+|++|++++|.+++....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 6777888888877766654333334455 67888888888877665554432 25788888888877742221
Q ss_pred HhhcCCC-CCCEEEccCCcCcccccccc--cccCC-CCCCEEeccCCCCCC
Q 045099 167 QGLANLR-YLQVLDLSGNPITGRFIARL--GLSSL-RNLKRLDLSNNYGFT 213 (217)
Q Consensus 167 ~~~~~l~-~L~~L~L~~n~l~~~~p~~~--~l~~l-~~L~~L~l~~N~l~~ 213 (217)
..+..++ +|++|++++|.+++..+... .+..+ ++|++|+|++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 1234444 78888888888776544300 22334 488888888887765
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.36 E-value=1.1e-11 Score=105.01 Aligned_cols=107 Identities=22% Similarity=0.115 Sum_probs=68.9
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|++++ + .+..
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~ 210 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL------DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQ 210 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC------CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTT
T ss_pred cccCCcCCEEECCCCCccccc------ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e---cccc
Confidence 445555666666665433333 24566777777777777775 33 6667777777777777764 2 2566
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p~ 216 (217)
+++|++|++++|++++ +| +..+++|+.|++++|+++++|.
T Consensus 211 l~~L~~L~Ls~N~l~~-ip----~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE-ID----VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC----CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCCCEEECcCCcccc-cC----ccccCCCCEEEeeCCcCCCcCH
Confidence 6777777777777776 33 3567777777777777776653
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.36 E-value=9.7e-12 Score=105.35 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcC
Q 045099 92 FPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN 171 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~ 171 (217)
+..+++|++|++++|.+++. .+..+++|++|++++|.+++ +| ++.+++|++|++++|++++ ++ +..
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~ 146 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSH 146 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTT
T ss_pred cccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---ccc
Confidence 44555566666666655553 13455555555555555554 22 4555555555555555553 22 334
Q ss_pred CCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCC
Q 045099 172 LRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 172 l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
+++|++|++++|...+.+ .+..+++|++|++++|++++
T Consensus 147 l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCC
T ss_pred CCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccce
Confidence 444444444444322222 12334444444444444444
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=7.5e-12 Score=108.60 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=96.7
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCC--------CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEE
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLS--------LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILN 130 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~ 130 (217)
.+++.+++++|.+. .++. ....+..++.. .+.. +|++|++++|.+++ +| . .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip~--~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~-lp-----~--~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLPE--LPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM-LP-----E--LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC-CC-----C--CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-cccc--ccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC-CC-----C--cCccccEEe
Confidence 46888889888877 3331 11222222211 1322 89999999999998 44 3 578999999
Q ss_pred ccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCC-------CE
Q 045099 131 LGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNL-------KR 203 (217)
Q Consensus 131 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L-------~~ 203 (217)
+++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|++|+|++|.++. +|. +.. +| +.
T Consensus 147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~-lp~---~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLES-LPA---VPV--RNHHSEETEIF 211 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSS-CCC---CC----------CCEE
T ss_pred CCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCc-hhh---HHH--hhhcccccceE
Confidence 99999996 555 57899999999999996 775 54 899999999999994 664 222 56 99
Q ss_pred EeccCCCCCCCCC
Q 045099 204 LDLSNNYGFTTPS 216 (217)
Q Consensus 204 L~l~~N~l~~~p~ 216 (217)
|+|++|+|+.+|+
T Consensus 212 L~Ls~N~l~~lp~ 224 (571)
T 3cvr_A 212 FRCRENRITHIPE 224 (571)
T ss_dssp EECCSSCCCCCCG
T ss_pred EecCCCcceecCH
Confidence 9999999999885
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=1.4e-13 Score=113.92 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc-----chHHhhcCCCCCEEEccCcccc----Cccch
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS-----ILSYLNTLTSLTTLILCDNSIE----GSRTK 166 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~----~~~p~ 166 (217)
++|++|++++|.++......+...+..+++|++|++++|.++.. .+..+..+++|+.|++++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45556666666555222111222444556666666666666521 2224555666666666666664 23443
Q ss_pred HhhcCCCCCCEEEccCCcCccc----ccccccc--cCCCCCCEEeccCCCCCC
Q 045099 167 QGLANLRYLQVLDLSGNPITGR----FIARLGL--SSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 167 ~~~~~l~~L~~L~L~~n~l~~~----~p~~~~l--~~l~~L~~L~l~~N~l~~ 213 (217)
.+..+++|++|+|++|.+++. ++. .+ +.+++|++|+|++|.+++
T Consensus 239 -~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 -ALKSWPNLRELGLNDCLLSARGAAAVVD--AFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp -HGGGCTTCCEEECTTCCCCHHHHHHHHH--HHHTCSSCCCCEEECCSSCCBH
T ss_pred -HHccCCCcCEEECCCCCCchhhHHHHHH--HHhhccCCCeEEEECcCCcCCH
Confidence 455666666666666666653 333 33 236666666666666654
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.33 E-value=1.7e-11 Score=103.69 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhc
Q 045099 91 LFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLA 170 (217)
Q Consensus 91 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 170 (217)
.+..+++|++|++++|.+++. |. . .++|++|++++|.+++ +| .++.+++|+.|++++|++++ +|.
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~l-p~----~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---- 212 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKL-PD----L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---- 212 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCC-CC----C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----
T ss_pred ccCCCCCCCEEECCCCcCccc-CC----C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----
Confidence 355666666666666666652 21 1 2355555555555554 33 35555555555555555553 322
Q ss_pred CCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 171 NLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 171 ~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
..++|++|++++|.++ .+| .+..+++|++|++++|+++++|
T Consensus 213 ~~~~L~~L~l~~n~l~-~lp---~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 213 LPLSLESIVAGNNILE-ELP---ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CCTTCCEEECCSSCCS-SCC---CCTTCTTCCEEECCSSCCSSCC
T ss_pred CcCcccEEECcCCcCC-ccc---ccCCCCCCCEEECCCCcCCccc
Confidence 0134444555554444 233 2345555555555555555544
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=2.4e-12 Score=105.25 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=97.8
Q ss_pred CcEEEEecCCccccCCCCCCC----C---------CCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNN----S---------SDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQ 125 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~----~---------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~ 125 (217)
.+++.|++++|.+.+.++... . .+.+..+.+..|..+++|++|++++|.++...+. .+....+
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~ 129 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV----HKIHSLQ 129 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC----TTCCBSS
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch----hhcccch
Confidence 478899999988765443321 0 1345556677788899999999999999887665 4445556
Q ss_pred CCEEEccC-CCCCccchHHhhcCC-CCCEEEccCccccCccchHhhcCCCCCCEEEccC-CcCcccccccccccCCCCCC
Q 045099 126 LKILNLGN-NRLNDSILSYLNTLT-SLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSG-NPITGRFIARLGLSSLRNLK 202 (217)
Q Consensus 126 L~~L~L~~-n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~l~~l~~L~ 202 (217)
+..|++.+ +.+....+..+..+. .++.|++++|+++ .++. ......+|+.+++.+ |.++. +|.. .+..+++|+
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~-~~f~~~~L~~l~l~~~n~l~~-i~~~-~f~~l~~L~ 205 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN-SAFNGTQLDELNLSDNNNLEE-LPND-VFHGASGPV 205 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT-TSSTTEEEEEEECTTCTTCCC-CCTT-TTTTEECCS
T ss_pred hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh-hhccccchhHHhhccCCcccC-CCHH-HhccCcccc
Confidence 66777654 455543334444443 5777778888776 4555 333456677777765 44443 4431 567777788
Q ss_pred EEeccCCCCCCCCC
Q 045099 203 RLDLSNNYGFTTPS 216 (217)
Q Consensus 203 ~L~l~~N~l~~~p~ 216 (217)
.|++++|+++.+|+
T Consensus 206 ~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 206 ILDISRTRIHSLPS 219 (350)
T ss_dssp EEECTTSCCCCCCS
T ss_pred hhhcCCCCcCccCh
Confidence 88888887777765
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=3.2e-12 Score=112.04 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=100.4
Q ss_pred ccCCCcCCCCCCCccccceEE------cCCCCcEEEEecCCccccCCCCCCCCCCCceeecCC--CC----CCCCCccEE
Q 045099 34 ILTSWVDDGISDCCDWERLKC------NATAGRVTELSLNRLKHYKSSNPNNSSDGVIILDLS--LF----PPFQELQSL 101 (217)
Q Consensus 34 ~l~~W~~~~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~l~~L~~L 101 (217)
....|.. ..++|.|.+..| ......++.++++++.+. .++.... ..+..++.. .+ ..+++|++|
T Consensus 11 ~w~~W~~--~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~lp~~l~~L~~L 86 (622)
T 3g06_A 11 VWSAWRR--AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTSLPALPPELRTL 86 (622)
T ss_dssp HHHHHHH--TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSCCCCCCTTCCEE
T ss_pred HHHHHHh--cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCCCCCcCCCCCEE
Confidence 4566876 457899966432 111234778888888876 3333221 111111110 00 145778888
Q ss_pred ECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEcc
Q 045099 102 DLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLS 181 (217)
Q Consensus 102 ~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~ 181 (217)
++++|.++..+. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|+++
T Consensus 87 ~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls 149 (622)
T 3g06_A 87 EVSGNQLTSLPV--------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVS 149 (622)
T ss_dssp EECSCCCSCCCC--------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECC
T ss_pred EcCCCcCCcCCC--------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEECc
Confidence 888888875332 56788888888888875 333 56788888888888874 554 24788999999
Q ss_pred CCcCccccccc-ccccCC--------------CCCCEEeccCCCCCCCCC
Q 045099 182 GNPITGRFIAR-LGLSSL--------------RNLKRLDLSNNYGFTTPS 216 (217)
Q Consensus 182 ~n~l~~~~p~~-~~l~~l--------------~~L~~L~l~~N~l~~~p~ 216 (217)
+|.+++ +|.. ..+..+ ++|+.|++++|+++++|+
T Consensus 150 ~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 150 DNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp SSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC
Confidence 988886 3330 012222 667777777777777664
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=5e-11 Score=100.89 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=81.4
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecC-----CCCCCC-CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEcc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDL-----SLFPPF-QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLG 132 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~ 132 (217)
.+++.++++++.+.+ ++... ..+..++. ..+..+ ++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~--~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-----~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELP--QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-----ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCc-ccccc--CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-----ccCCCCCCCEEECC
Confidence 456677777776664 22211 11111111 112222 467777777777766 33 46677777777777
Q ss_pred CCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCC
Q 045099 133 NNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 133 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
+|.+++ +|.. ..+|++|++++|++++ +| .+..+++|++|++++|.+++ +|. . .++|++|++++|+++
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l~~--~---~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-LPD--L---PLSLESIVAGNNILE 228 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-CCC--C---CTTCCEEECCSSCCS
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-CCC--C---cCcccEEECcCCcCC
Confidence 777764 4432 3467777777777774 55 36777777777777777775 443 2 247777777777777
Q ss_pred CCC
Q 045099 213 TTP 215 (217)
Q Consensus 213 ~~p 215 (217)
.+|
T Consensus 229 ~lp 231 (454)
T 1jl5_A 229 ELP 231 (454)
T ss_dssp SCC
T ss_pred ccc
Confidence 665
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=8.9e-13 Score=108.30 Aligned_cols=145 Identities=24% Similarity=0.259 Sum_probs=104.3
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCC-CccEEECCCCcCCCccCcchhhcccCC-CCCCEEEccCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQ-ELQSLDLSENWFGGVSESKAYNSSGNL-KQLKILNLGNNRL 136 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~l-~~L~~L~L~~n~l 136 (217)
..++.++++++.+.+.. ...+ ...+..++ +|++|++++|.+++..+..+...+... ++|++|++++|.+
T Consensus 22 ~~L~~L~Ls~n~l~~~~--------~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSIS--------TVEL-IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TTCCEEECTTSCGGGSC--------HHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCceEEEccCCCCChHH--------HHHH-HHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 45888999998877220 0000 03456677 899999999999887766332233333 8999999999999
Q ss_pred CccchHHhhc----C-CCCCEEEccCccccCccchHhh----cC-CCCCCEEEccCCcCccc----ccccccccCCC-CC
Q 045099 137 NDSILSYLNT----L-TSLTTLILCDNSIEGSRTKQGL----AN-LRYLQVLDLSGNPITGR----FIARLGLSSLR-NL 201 (217)
Q Consensus 137 ~~~~p~~~~~----l-~~L~~L~l~~n~l~~~~p~~~~----~~-l~~L~~L~L~~n~l~~~----~p~~~~l~~l~-~L 201 (217)
++..+..+.. + ++|++|++++|.+++..+. .+ .. .++|++|++++|.+++. ++. .+..++ +|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--~l~~~~~~L 169 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ--ILAAIPANV 169 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH--HHHTSCTTC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH--HHhcCCccc
Confidence 8777765444 4 8999999999999854332 33 33 36999999999999963 333 445565 99
Q ss_pred CEEeccCCCCCCCC
Q 045099 202 KRLDLSNNYGFTTP 215 (217)
Q Consensus 202 ~~L~l~~N~l~~~p 215 (217)
++|++++|++++..
T Consensus 170 ~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 170 NSLNLRGNNLASKN 183 (362)
T ss_dssp CEEECTTSCGGGSC
T ss_pred cEeeecCCCCchhh
Confidence 99999999987654
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=5.8e-14 Score=105.89 Aligned_cols=136 Identities=25% Similarity=0.314 Sum_probs=107.1
Q ss_pred cEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCcc
Q 045099 60 RVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDS 139 (217)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 139 (217)
.++.++++.+.+.|..+. +..++ ..+..+++|++|++++|.+++. | .+..+++|++|++++|.++ .
T Consensus 19 ~l~~l~l~~~~l~~~~~~------l~~l~-~~~~~l~~L~~L~ls~n~l~~l-~-----~~~~l~~L~~L~l~~n~l~-~ 84 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPP------IEKMD-ATLSTLKACKHLALSTNNIEKI-S-----SLSGMENLRILSLGRNLIK-K 84 (198)
T ss_dssp CCCCTTCSEEECCBCCTT------CCCCH-HHHHHTTTCSEEECSEEEESCC-C-----CHHHHTTCCEEEEEEEEEC-S
T ss_pred cccCcchheeEeccccCc------Hhhhh-HHHhcCCCCCEEECCCCCCccc-c-----ccccCCCCCEEECCCCCcc-c
Confidence 555666666666654322 11111 1466789999999999999983 3 5778999999999999998 5
Q ss_pred chHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccccc-ccccccCCCCCCEEeccCCCCCCC
Q 045099 140 ILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFI-ARLGLSSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 140 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~l~~l~~L~~L~l~~N~l~~~ 214 (217)
+|..+..+++|+.|++++|++++ +| .+..+++|++|++++|.+++..+ . .+..+++|++|++++|.+++.
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIAS-LS--GIEKLVNLRVLYMSNNKITNWGEID--KLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHHSSEEEESEEECCCHHHHH--HHTTTTTCSEEEECSCHHHHH
T ss_pred ccchhhcCCcCCEEECcCCcCCc-CC--ccccCCCCCEEECCCCcCCchhHHH--HHhcCCCCCEEEecCCccccc
Confidence 77777788999999999999985 55 47888999999999999997432 3 678899999999999987554
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.27 E-value=1.3e-11 Score=108.16 Aligned_cols=107 Identities=22% Similarity=0.169 Sum_probs=80.1
Q ss_pred CCCccEEECCCCcCCCccCcchhhccc--------------CCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccc
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSG--------------NLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSI 160 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~--------------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 160 (217)
+++|+.|++++|.+++.... ...+. .+++|++|++++|.+++ +| ..+++|+.|++++|++
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRL 253 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC
T ss_pred CCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCC
Confidence 36677777777777663321 00111 23678888888888885 45 4568899999999999
Q ss_pred cCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 161 EGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 161 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
+ .+|. .+++|++|++++|.++ .+|. .+..+++|+.|+|++|++++.+
T Consensus 254 ~-~lp~----~~~~L~~L~Ls~N~L~-~lp~--~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 254 T-SLPM----LPSGLLSLSVYRNQLT-RLPE--SLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp S-CCCC----CCTTCCEEECCSSCCC-SCCG--GGGGSCTTCEEECCSCCCCHHH
T ss_pred C-cCCc----ccccCcEEeCCCCCCC-cCCH--HHhhccccCEEEecCCCCCCcC
Confidence 8 4664 5688999999999999 5787 8899999999999999987643
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=1.2e-12 Score=110.44 Aligned_cols=87 Identities=26% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCCEEEccCCCCCcc----chHHhhcCCCCCEEEccCccccCccchHhhc-----CCCCCCEEEccCCcCcc----ccc
Q 045099 124 KQLKILNLGNNRLNDS----ILSYLNTLTSLTTLILCDNSIEGSRTKQGLA-----NLRYLQVLDLSGNPITG----RFI 190 (217)
Q Consensus 124 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----~l~~L~~L~L~~n~l~~----~~p 190 (217)
++|++|++++|.+++. ++..+..+++|++|++++|.+++..+. .+. ..++|++|++++|.+++ .++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 4566666666665543 344555667777777777777643222 222 15677778887777775 566
Q ss_pred ccccccCCCCCCEEeccCCCCCC
Q 045099 191 ARLGLSSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 191 ~~~~l~~l~~L~~L~l~~N~l~~ 213 (217)
. .+..+++|++|++++|++++
T Consensus 392 ~--~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 392 A--TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp H--HHHHCCCCCEEECCSSSCCH
T ss_pred H--HHHhCCCccEEECCCCCCCH
Confidence 6 66677888888888887754
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=1.5e-12 Score=109.81 Aligned_cols=143 Identities=23% Similarity=0.152 Sum_probs=84.0
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..++.++++++.+... ++..+....+..+++|++|++++|.++......+...+..+++|++|++++|.+++
T Consensus 227 ~~L~~L~Ls~n~l~~~--------~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 227 ASLRELALGSNKLGDV--------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp TTCCEEECCSSBCHHH--------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred CCccEEeccCCcCChH--------HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 4677788887766521 11111112233466777777777777664221122245567777777777777765
Q ss_pred cchHHhhc-----CCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCcccccccccccC-----CCCCCEE
Q 045099 139 SILSYLNT-----LTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGRFIARLGLSS-----LRNLKRL 204 (217)
Q Consensus 139 ~~p~~~~~-----l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~-----l~~L~~L 204 (217)
..+..+.. .++|+.|++++|.+++. ++. .+..+++|++|++++|.+++..+. .+.. .++|++|
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVR--ELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHH--HHHHHHTSTTCCCCEE
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHH--HHHHHHcCCCCceEEE
Confidence 44444432 25777777777777643 232 455667777777777777764333 2221 5677777
Q ss_pred eccCCCCC
Q 045099 205 DLSNNYGF 212 (217)
Q Consensus 205 ~l~~N~l~ 212 (217)
++++|+++
T Consensus 376 ~L~~n~i~ 383 (461)
T 1z7x_W 376 WLADCDVS 383 (461)
T ss_dssp ECTTSCCC
T ss_pred ECCCCCCC
Confidence 77777765
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.18 E-value=1.1e-12 Score=103.22 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=100.7
Q ss_pred CCccccceEEcCCCCcEEEEecCC---ccccCCCCCCC-----------CCCCceeecCCCCCCCCCccE--EECCCCcC
Q 045099 45 DCCDWERLKCNATAGRVTELSLNR---LKHYKSSNPNN-----------SSDGVIILDLSLFPPFQELQS--LDLSENWF 108 (217)
Q Consensus 45 ~~c~w~gv~c~~~~~~v~~l~l~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~L~~--L~l~~n~l 108 (217)
..|.|.|+.|+....+|+.+...+ ..+.+.+.++. .......++++.+...+.|.. ++++.|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 468899999987555665544433 23333332210 001112344555555555655 66666632
Q ss_pred CCccCcchhhcccCCCCCCEEEccCCCCCc--cchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCc
Q 045099 109 GGVSESKAYNSSGNLKQLKILNLGNNRLND--SILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186 (217)
Q Consensus 109 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 186 (217)
... +..+.-....+++|++|+|++|+|++ .+|..+..+++|+.|+|++|++++.-....+..+ +|+.|+|.+|.+.
T Consensus 156 ~~~-~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCM-AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHH-HHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred HHH-HHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 211 11000022468899999999999997 4557778899999999999999864111123333 9999999999999
Q ss_pred cccccc-----ccccCCCCCCEEec
Q 045099 187 GRFIAR-----LGLSSLRNLKRLDL 206 (217)
Q Consensus 187 ~~~p~~-----~~l~~l~~L~~L~l 206 (217)
+.+|.. ..+..+++|+.||-
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCcchhHHHHHHHHCcccCeECC
Confidence 766521 14678999999873
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=8.2e-12 Score=103.09 Aligned_cols=140 Identities=23% Similarity=0.209 Sum_probs=96.2
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcc-cCCCCCCEEEccCCCCC
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSS-GNLKQLKILNLGNNRLN 137 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~ 137 (217)
..++.++++++.+... +.. .....+++|++|++++|.++......+...+ ...++|++|+|++|.++
T Consensus 101 ~~L~~L~Ls~n~l~~~--------~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 101 HALDEVNLASCQLDPA--------GLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp SCEEEEECTTCCCCHH--------HHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCH
T ss_pred CCceEEEecCCCCCHH--------HHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCC
Confidence 3667777777665411 000 0112345789999999988765544222233 34678999999999997
Q ss_pred cc----chHHhhcCCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEe
Q 045099 138 DS----ILSYLNTLTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLD 205 (217)
Q Consensus 138 ~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~ 205 (217)
+. ++..+..+++|++|+|++|.+++. +.. .+...++|+.|+|++|.+++. +.. .+...++|++|+
T Consensus 169 ~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~~~l~~--~L~~~~~L~~L~ 245 (372)
T 3un9_A 169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALAR--AAREHPSLELLH 245 (372)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHHHHHHH--HHHHCSSCCEEE
T ss_pred hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHHHHHHH--HHHhCCCCCEEe
Confidence 53 344457788999999999998742 122 466778999999999999863 333 455678999999
Q ss_pred ccCCCCCC
Q 045099 206 LSNNYGFT 213 (217)
Q Consensus 206 l~~N~l~~ 213 (217)
|++|.++.
T Consensus 246 Ls~N~i~~ 253 (372)
T 3un9_A 246 LYFNELSS 253 (372)
T ss_dssp CTTSSCCH
T ss_pred ccCCCCCH
Confidence 99998863
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=1.8e-11 Score=101.12 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=100.1
Q ss_pred CcEEEEecCCccccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCc
Q 045099 59 GRVTELSLNRLKHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLND 138 (217)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (217)
..+..++++++.+... ....+........++|++|++++|.++...... ....+++|++|+|++|.+++
T Consensus 72 ~~L~~L~Ls~n~l~~~--------~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~---l~~~L~~L~~L~Ls~n~l~~ 140 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPV--------KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLRARKLGLQLNSLGP 140 (372)
T ss_dssp TTCCEEECTTSCCCHH--------HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH---THHHHHTEEEEECCSSCCCH
T ss_pred hhCCEEEecCCCCCHH--------HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH---HHHHHHhccHhhcCCCCCCH
Confidence 4678899998887621 000010000123468999999999987654332 22345689999999999986
Q ss_pred cchHHhh-----cCCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEe
Q 045099 139 SILSYLN-----TLTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLD 205 (217)
Q Consensus 139 ~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~ 205 (217)
.....+. ..++|+.|++++|.++.. ++. .+..+++|++|+|++|.+++. ++. .+...++|+.|+
T Consensus 141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~--~L~~~~~L~~L~ 217 (372)
T 3un9_A 141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAA--QLDRNRQLQELN 217 (372)
T ss_dssp HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHH--HGGGCSCCCEEE
T ss_pred HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHH--HHhcCCCcCeEE
Confidence 6555442 468899999999999742 222 457789999999999999863 244 567788999999
Q ss_pred ccCCCCCC
Q 045099 206 LSNNYGFT 213 (217)
Q Consensus 206 l~~N~l~~ 213 (217)
|++|.++.
T Consensus 218 Ls~N~i~~ 225 (372)
T 3un9_A 218 VAYNGAGD 225 (372)
T ss_dssp CCSSCCCH
T ss_pred CCCCCCCH
Confidence 99999864
No 140
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.03 E-value=2e-10 Score=85.58 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=90.0
Q ss_pred CCCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhhcCCCCCEEEccCccccCc---
Q 045099 92 FPPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLNTLTSLTTLILCDNSIEGS--- 163 (217)
Q Consensus 92 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~--- 163 (217)
+...+.|++|+|++| .+.......+...+...++|++|+|++|.+.+.. ...+...++|++|+|++|.|+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456788999999999 8876544444446777889999999999998543 34455678999999999999742
Q ss_pred -cchHhhcCCCCCCEEEc--cCCcCccc----ccccccccCCCCCCEEeccCCCC
Q 045099 164 -RTKQGLANLRYLQVLDL--SGNPITGR----FIARLGLSSLRNLKRLDLSNNYG 211 (217)
Q Consensus 164 -~p~~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l 211 (217)
+. ..+...+.|++|+| ++|.+++. +.. .+...++|++|+|++|.+
T Consensus 112 ~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~--~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIAN--MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH--HHHHCSSCCEEECCCSSH
T ss_pred HHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHH--HHHhCCCcCEEeccCCCC
Confidence 22 25667789999999 88999864 333 556678999999999976
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=1.3e-09 Score=88.27 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=72.7
Q ss_pred CCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCC-EEEccCCcCcccccccccccCCCCC
Q 045099 123 LKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQ-VLDLSGNPITGRFIARLGLSSLRNL 201 (217)
Q Consensus 123 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~l~~l~~L 201 (217)
+++|++++|++|.++......|..+.+|+.+++..| ++ .++...|..+.+|+ .+++.. .++...+. .|..+++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~--aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFG--AFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTT--TTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchh--hhhCCccC
Confidence 678999999998888655567888999999999887 66 57766889999999 999988 66654445 88899999
Q ss_pred CEEeccCCCCCCCCC
Q 045099 202 KRLDLSNNYGFTTPS 216 (217)
Q Consensus 202 ~~L~l~~N~l~~~p~ 216 (217)
+.++++.|+++.+++
T Consensus 300 ~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 300 RYVLATGDKITTLGD 314 (329)
T ss_dssp EEEEECSSCCCEECT
T ss_pred CEEEeCCCccCccch
Confidence 999999888877654
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1e-08 Score=82.94 Aligned_cols=103 Identities=19% Similarity=0.082 Sum_probs=90.3
Q ss_pred CCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCC-EEEccCccccCccchHhhcCCC
Q 045099 95 FQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLT-TLILCDNSIEGSRTKQGLANLR 173 (217)
Q Consensus 95 l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~~l~ 173 (217)
+++|+.|++++|.++..... .|..+.+|++|++.+| +....+..|.++.+|+ .+++.. .++ .++...|..++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCc
Confidence 78999999999999987776 8999999999999998 7765567899999999 999988 776 56666899999
Q ss_pred CCCEEEccCCcCcccccccccccCCCCCCEEec
Q 045099 174 YLQVLDLSGNPITGRFIARLGLSSLRNLKRLDL 206 (217)
Q Consensus 174 ~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l 206 (217)
+|+.+++..|.++...+. .|..+++|+.++.
T Consensus 298 ~L~~l~l~~n~i~~I~~~--aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDE--LFGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECSSCCCEECTT--TTCTTCCCCEEEC
T ss_pred cCCEEEeCCCccCccchh--hhcCCcchhhhcc
Confidence 999999999999976555 8999999999874
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.83 E-value=1.7e-09 Score=93.74 Aligned_cols=93 Identities=19% Similarity=0.135 Sum_probs=63.5
Q ss_pred ccCCCCCCEEEccCC--CCCccchHHhhc-CCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCccc-ccccccc
Q 045099 120 SGNLKQLKILNLGNN--RLNDSILSYLNT-LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGR-FIARLGL 195 (217)
Q Consensus 120 ~~~l~~L~~L~L~~n--~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~l 195 (217)
+..+++|++|+++.+ .+++..+..+.. +++|++|++++|++++......+..+++|++|++++|.+++. ++. .+
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~ 509 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA--AV 509 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH--HH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH--HH
Confidence 344666777777532 355555555443 778888888888887532222457788899999999888754 333 44
Q ss_pred cCCCCCCEEeccCCCCCCC
Q 045099 196 SSLRNLKRLDLSNNYGFTT 214 (217)
Q Consensus 196 ~~l~~L~~L~l~~N~l~~~ 214 (217)
..+++|++|++++|+++..
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 6788899999999987754
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.72 E-value=6.2e-09 Score=90.26 Aligned_cols=88 Identities=15% Similarity=0.038 Sum_probs=52.6
Q ss_pred CCCCCEEEcc----CCCCCcc-----chHHhhcCCCCCEEEccCc--cccCccchHhhcCCCCCCEEEccCCcCccc-cc
Q 045099 123 LKQLKILNLG----NNRLNDS-----ILSYLNTLTSLTTLILCDN--SIEGSRTKQGLANLRYLQVLDLSGNPITGR-FI 190 (217)
Q Consensus 123 l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p 190 (217)
+++|++|+++ .|.+++. ++..+..+++|+.|+++.| .+++..+......+++|++|++++|.+++. ++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 4555555553 4445432 3333445566666666532 244333332233477888888888888763 44
Q ss_pred ccccccCCCCCCEEeccCCCCC
Q 045099 191 ARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 191 ~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
. .+..+++|++|++++|.++
T Consensus 482 ~--~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 482 E--FSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp H--HHTCCTTCCEEEEESCCCB
T ss_pred H--HHhcCcccCeeeccCCCCc
Confidence 4 5577888999999998864
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.65 E-value=4.8e-08 Score=76.75 Aligned_cols=82 Identities=30% Similarity=0.283 Sum_probs=65.1
Q ss_pred CCCCCccEEECCCCcCCCcc--CcchhhcccCCCCCCEEEccCCCCCccchHHhhcCC--CCCEEEccCccccCccch--
Q 045099 93 PPFQELQSLDLSENWFGGVS--ESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLT--SLTTLILCDNSIEGSRTK-- 166 (217)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~p~-- 166 (217)
..+++|+.|+|++|.+++.. +. .+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch
Confidence 35789999999999999954 33 567899999999999999975 3334444 999999999999876652
Q ss_pred ----HhhcCCCCCCEEEc
Q 045099 167 ----QGLANLRYLQVLDL 180 (217)
Q Consensus 167 ----~~~~~l~~L~~L~L 180 (217)
..+..+++|+.||-
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 24678899998873
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.58 E-value=2.9e-08 Score=86.03 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=60.0
Q ss_pred ccCCCCCCEEEccCCCCCccchHHhhc-CCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099 120 SGNLKQLKILNLGNNRLNDSILSYLNT-LTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198 (217)
Q Consensus 120 ~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l 198 (217)
+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|++|++++|.+++..... .+..+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~-~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA-NASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH-TGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH-HHHhC
Confidence 44566777777766 666555555554 7788888888888765433322256788888888888886543321 33457
Q ss_pred CCCCEEeccCCCC
Q 045099 199 RNLKRLDLSNNYG 211 (217)
Q Consensus 199 ~~L~~L~l~~N~l 211 (217)
++|+.|++++|++
T Consensus 506 ~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 506 ETMRSLWMSSCSV 518 (594)
T ss_dssp GGSSEEEEESSCC
T ss_pred CCCCEEeeeCCCC
Confidence 7888888888876
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=1.2e-08 Score=75.82 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=87.6
Q ss_pred CCcEEEEecCCc-cccCCCCCCCCCCCceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCC
Q 045099 58 AGRVTELSLNRL-KHYKSSNPNNSSDGVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRL 136 (217)
Q Consensus 58 ~~~v~~l~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l 136 (217)
...++.++++++ .+... +...+ ...+...+.|++|+|++|.+.......+...+...++|++|+|++|.|
T Consensus 35 ~~~L~~L~L~~n~~i~~~--------g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVP--------TLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp CTTCCEEECTTCTTCCHH--------HHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred CCCCCEEEecCCCCCCHH--------HHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 457889999988 76521 11111 123456788999999999998754443444566778999999999999
Q ss_pred Ccc----chHHhhcCCCCCEEEc--cCccccCccc---hHhhcCCCCCCEEEccCCcCcc
Q 045099 137 NDS----ILSYLNTLTSLTTLIL--CDNSIEGSRT---KQGLANLRYLQVLDLSGNPITG 187 (217)
Q Consensus 137 ~~~----~p~~~~~l~~L~~L~l--~~n~l~~~~p---~~~~~~l~~L~~L~L~~n~l~~ 187 (217)
.+. +...+...++|++|++ ++|.++.... ...+...++|++|++++|.+..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 865 3455667789999999 8899974311 1245667899999999998764
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.41 E-value=7e-08 Score=83.62 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=51.9
Q ss_pred CCCCCEEEcc--C----CCCCc-----cchHHhhcCCCCCEEEccCccccCccchHhhcC-CCCCCEEEccCCcCccccc
Q 045099 123 LKQLKILNLG--N----NRLND-----SILSYLNTLTSLTTLILCDNSIEGSRTKQGLAN-LRYLQVLDLSGNPITGRFI 190 (217)
Q Consensus 123 l~~L~~L~L~--~----n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~p 190 (217)
+++|++|+++ + +.+++ .++..+..+++|+.|++++ .+++.... .+.. +++|++|++++|.+++..+
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~-~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE-YIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH-HHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH-HHHHhchhccEeeccCCCCcHHHH
Confidence 5566666666 2 34441 1222344556666666655 44433222 2333 7788888888888876544
Q ss_pred ccccc-cCCCCCCEEeccCCCCC
Q 045099 191 ARLGL-SSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 191 ~~~~l-~~l~~L~~L~l~~N~l~ 212 (217)
. .+ ..+++|+.|++++|.++
T Consensus 474 ~--~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 474 H--HVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp H--HHHHHCTTCCEEEEESCSCC
T ss_pred H--HHHhcCCCcCEEECcCCCCc
Confidence 3 33 56888999999988874
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=1.9e-07 Score=68.57 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=68.5
Q ss_pred CCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCC-CCccchHHhhcC----CCCCEEEccCcc-ccCccchHhh
Q 045099 96 QELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNR-LNDSILSYLNTL----TSLTTLILCDNS-IEGSRTKQGL 169 (217)
Q Consensus 96 ~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~ 169 (217)
..|++||++++.++...-. .+..+++|++|+|+++. +++.....+..+ ++|++|++++|. ++..-- ..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHG
T ss_pred ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHH
Confidence 4689999999988765544 67889999999999985 887777777765 479999999985 774322 257
Q ss_pred cCCCCCCEEEccCCc-Ccc
Q 045099 170 ANLRYLQVLDLSGNP-ITG 187 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~-l~~ 187 (217)
..+++|++|+++++. +++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 789999999999986 664
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=1.7e-06 Score=72.00 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=80.0
Q ss_pred ceeecCCCCCCCCCccEEECCCC---------------------cCCCccCcchhhcccCCCCCCEEEccCCCCC-----
Q 045099 84 VIILDLSLFPPFQELQSLDLSEN---------------------WFGGVSESKAYNSSGNLKQLKILNLGNNRLN----- 137 (217)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 137 (217)
+..+....|..+.+|+.+++..+ .++..... .|..+++|+.+.+.+|.+.
T Consensus 214 l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 214 LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTC
T ss_pred hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCccc
Confidence 44455566777777777777653 12222222 5667778888888777654
Q ss_pred ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCCCCCC
Q 045099 138 DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYGFTTP 215 (217)
Q Consensus 138 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l~~~p 215 (217)
......|..+++|+.+.+. +.++ .++...|..+.+|+.+.+..| ++..-.. .|..+ +|+.+++.+|.+..++
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~--aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFS--AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CCEECTT--SSSSS-CCCEEEECCSSCCBCC
T ss_pred EECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-ccEEcHH--hCCCC-CCCEEEEcCCCCcccc
Confidence 2334567778888888887 4465 455567888888888888554 5543334 77778 8999999888765543
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=3.4e-07 Score=67.23 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=67.8
Q ss_pred CCCCEEEccCCCCCccchHHhhcCCCCCEEEccCcc-ccCccchHhhcCC----CCCCEEEccCCc-CcccccccccccC
Q 045099 124 KQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNS-IEGSRTKQGLANL----RYLQVLDLSGNP-ITGRFIARLGLSS 197 (217)
Q Consensus 124 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~l~~ 197 (217)
.+|+.||++++.+++.....+..+++|+.|+|++|. +++.-- ..+..+ ++|++|+|++|. +|+.--. .+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGII--ALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHH--HGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHH--HHhc
Confidence 469999999999998777788899999999999995 764322 245554 479999999985 8876444 6778
Q ss_pred CCCCCEEeccCCC
Q 045099 198 LRNLKRLDLSNNY 210 (217)
Q Consensus 198 l~~L~~L~l~~N~ 210 (217)
+++|++|++++..
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 9999999999864
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=3.3e-07 Score=75.23 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=34.8
Q ss_pred CCCCCEEEccCccccCccchHhh---cCCCCCCEEEccCCcCccc----ccccccccCCCCCCEEeccCCCCC
Q 045099 147 LTSLTTLILCDNSIEGSRTKQGL---ANLRYLQVLDLSGNPITGR----FIARLGLSSLRNLKRLDLSNNYGF 212 (217)
Q Consensus 147 l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~----~p~~~~l~~l~~L~~L~l~~N~l~ 212 (217)
+++|+.|++.+|.+++..+. .+ ..+++|++|+|+.|.+++. ++. .+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~--~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLD--HVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHT--THHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHh--hcccCCcceEEECCCCcCC
Confidence 56666666666666532222 12 1355667777766666652 222 3344566777777666554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.7e-06 Score=70.94 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=77.0
Q ss_pred CCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhh--cCCCCCEEEccC--ccccCc-----
Q 045099 93 PPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLN--TLTSLTTLILCD--NSIEGS----- 163 (217)
Q Consensus 93 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~----- 163 (217)
..+++|+.|.+++|.-.. .+ .+ .+++|++|+|..+.+.......+. .+++|+.|+|+. |...+.
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~-----~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IG-----KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CC-----SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred hcCCCCcEEEEeCCCCce-ec-----cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 457899999998773111 12 23 378999999999988765555554 789999999863 222211
Q ss_pred cchHhh--cCCCCCCEEEccCCcCcccccccccc---cCCCCCCEEeccCCCCCC
Q 045099 164 RTKQGL--ANLRYLQVLDLSGNPITGRFIARLGL---SSLRNLKRLDLSNNYGFT 213 (217)
Q Consensus 164 ~p~~~~--~~l~~L~~L~L~~n~l~~~~p~~~~l---~~l~~L~~L~l~~N~l~~ 213 (217)
+.. .+ ..+++|++|+|.+|.+++..+. .+ ..+++|++|+|+.|.+.+
T Consensus 242 l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~--~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 242 FRP-LFSKDRFPNLKWLGIVDAEEQNVVVE--MFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TGG-GSCTTTCTTCCEEEEESCTTHHHHHH--HHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHH-HHhcCCCCCcCEEeCCCCCCchHHHH--HHHhCccCCCCCEEECCCCCCCh
Confidence 111 12 3578999999999998864433 22 357899999999998764
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.18 E-value=9.7e-06 Score=67.34 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=62.5
Q ss_pred ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCc-----
Q 045099 84 VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDN----- 158 (217)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n----- 158 (217)
+..+....|..+.+|+.+++..|.++..... .|. ..+|+.+.+..+ +.......|..+++|+.+++..+
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~----aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~ 241 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPAS----TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIG 241 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCCSEECTT----TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEEC
T ss_pred ccEehHHHhhCcccCCeeecCCCcceEechh----hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcc
Confidence 3345555677777888888877766655443 333 244555555422 33222334444555555555432
Q ss_pred ----------------cccCccchHhhcCCCCCCEEEccCCcCc-----ccccccccccCCCCCCEEecc
Q 045099 159 ----------------SIEGSRTKQGLANLRYLQVLDLSGNPIT-----GRFIARLGLSSLRNLKRLDLS 207 (217)
Q Consensus 159 ----------------~l~~~~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~l~~l~~L~~L~l~ 207 (217)
.++ .++...|..+++|+.+.+.+|.+. ..... .+..+++|+.+.+.
T Consensus 242 ~~aF~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 242 QEAFRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIP 308 (401)
T ss_dssp TTTTTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCC
T ss_pred ccccccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeC
Confidence 232 243445666777777777666544 11222 56667777777776
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.08 E-value=6.2e-06 Score=61.63 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCCCCccEEECCCC-cCCCccCcchhhcccCCCCCCEEEccCCCCCccc----hHHhhcCCCCCEEEccCccccCccch-
Q 045099 93 PPFQELQSLDLSEN-WFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSI----LSYLNTLTSLTTLILCDNSIEGSRTK- 166 (217)
Q Consensus 93 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~~~~p~- 166 (217)
..-+.|++|+|++| .+....-..++..+..-+.|+.|+|++|.+.+.. ...+..-++|+.|+|+.|.|+..--.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45678999999985 7765433334456777889999999999997543 33445668899999999999742111
Q ss_pred --HhhcCCCCCCEEEccCC---cCcc----cccccccccCCCCCCEEeccCCC
Q 045099 167 --QGLANLRYLQVLDLSGN---PITG----RFIARLGLSSLRNLKRLDLSNNY 210 (217)
Q Consensus 167 --~~~~~l~~L~~L~L~~n---~l~~----~~p~~~~l~~l~~L~~L~l~~N~ 210 (217)
..+..-..|+.|+|++| .+.. .+.. .+..-+.|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~--aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH--HHHhCCCcCeEeccCCC
Confidence 24556678999999865 3343 2333 55667889999998764
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.73 E-value=0.00034 Score=57.64 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=67.1
Q ss_pred ceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCc
Q 045099 84 VIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGS 163 (217)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 163 (217)
+..+....|..+..|+.+.+..+.. ..... .|..++.|+.+.+. +.++......|..+.+|+.+.+..+ ++ .
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~----aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~ 324 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVV-SIGTG----AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-Q 324 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCC-EECTT----TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-E
T ss_pred ceEcccceeeecccccEEecccccc-eecCc----ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-E
Confidence 3444455677777888887765432 22222 55666777777765 3344333345666777777777643 43 3
Q ss_pred cchHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099 164 RTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 164 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N 209 (217)
+....|..+.+|+.+.+..+ ++..-.. .|.++++|+.+++.++
T Consensus 325 I~~~aF~~C~~L~~i~ip~s-v~~I~~~--aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 325 ILDDAFAGCEQLERIAIPSS-VTKIPES--AFSNCTALNNIEYSGS 367 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCBCCGG--GGTTCTTCCEEEESSC
T ss_pred ehHhHhhCCCCCCEEEECcc-cCEEhHh--HhhCCCCCCEEEECCc
Confidence 44446777777777777543 4432222 6667777777776654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.66 E-value=0.00024 Score=58.09 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=71.7
Q ss_pred cCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchH
Q 045099 88 DLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQ 167 (217)
Q Consensus 88 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 167 (217)
....+..+..|+.+.+..+ ++..... .|..+..|+.+.+..+ +.......|..+.+|+.+.+..+.++ .++..
T Consensus 232 ~~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~ 304 (379)
T 4h09_A 232 GDGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPR 304 (379)
T ss_dssp CTTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTT
T ss_pred ccccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhh
Confidence 3345556667777776554 4433333 5667777777777543 44333446677888888888877776 46555
Q ss_pred hhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099 168 GLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 168 ~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N 209 (217)
.|..+.+|+.+.+..+ ++..-.. .+.++++|+.+.+..+
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~--aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVY--AFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTT--TTTTCTTCCCCCCCTT
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHH--HhhCCCCCCEEEECCc
Confidence 7888888888888654 4432223 6777788887777543
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.00038 Score=57.33 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=79.2
Q ss_pred eecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccc
Q 045099 86 ILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRT 165 (217)
Q Consensus 86 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 165 (217)
.+....|..+..|+.+.+. +.++..... .|.++.+|+.+.|..+ ++......|.++.+|+.+.+..+ ++ .+.
T Consensus 278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~ 349 (394)
T 4gt6_A 278 SIGTGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIP 349 (394)
T ss_dssp EECTTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCC
T ss_pred eecCcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEh
Confidence 4455678889999999996 445555554 7889999999999865 55444567889999999999755 65 466
Q ss_pred hHhhcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCCCC
Q 045099 166 KQGLANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNNYG 211 (217)
Q Consensus 166 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N~l 211 (217)
...|.++.+|+.+++.++.... . .+..+..|+.+.+..|.+
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~~---~--~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQW---N--AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHHH---H--TCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECCceeeh---h--hhhccCCCCEEEeCCCCE
Confidence 6789999999999999876442 2 566788899988877654
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=0.00028 Score=52.61 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=67.0
Q ss_pred cccCCCCCCEEEccCC-CCCcc----chHHhhcCCCCCEEEccCccccCc----cchHhhcCCCCCCEEEccCCcCccc-
Q 045099 119 SSGNLKQLKILNLGNN-RLNDS----ILSYLNTLTSLTTLILCDNSIEGS----RTKQGLANLRYLQVLDLSGNPITGR- 188 (217)
Q Consensus 119 ~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~- 188 (217)
.+..-+.|++|+|++| .+.+. +-..+..-.+|+.|+|++|.+... +.. .+..-+.|++|+|+.|.+.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHHH
Confidence 4566789999999985 88753 334566678999999999999732 222 456678999999999999963
Q ss_pred ---ccccccccCCCCCCEEeccCC
Q 045099 189 ---FIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 189 ---~p~~~~l~~l~~L~~L~l~~N 209 (217)
+.+ .+..-+.|++|+|++|
T Consensus 115 a~ala~--aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLR--STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHH--HTTTTCCCSEEECCCC
T ss_pred HHHHHH--HHhhCCceeEEECCCC
Confidence 333 5566678999999865
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.28 E-value=0.0014 Score=53.85 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=58.8
Q ss_pred cccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCcccccccccccCC
Q 045099 119 SSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPITGRFIARLGLSSL 198 (217)
Q Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l 198 (217)
.|..+.+|+.+.+..+ +.......|..+.+|+.+++..+ ++ .+....|..+.+|+.+.+..+ ++..-.. .+..+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~--aF~~C 365 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGAN--AFQGC 365 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT--TBTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHH--HhhCC
Confidence 4556777888877654 54333456778888888888644 55 455557888888888888766 5543333 77888
Q ss_pred CCCCEEeccCC
Q 045099 199 RNLKRLDLSNN 209 (217)
Q Consensus 199 ~~L~~L~l~~N 209 (217)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 88888887654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.09 E-value=0.001 Score=54.75 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=76.0
Q ss_pred CCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHhh
Q 045099 90 SLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQGL 169 (217)
Q Consensus 90 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 169 (217)
..+..+..|+.+.+..+ ++..... .|..+.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++ .+....|
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF 362 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAF 362 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTB
T ss_pred ccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHh
Confidence 45667778888888654 5444444 7888999999999754 66444568889999999999877 65 4666689
Q ss_pred cCCCCCCEEEccCCcCcccccccccccCCCCCCEE
Q 045099 170 ANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRL 204 (217)
Q Consensus 170 ~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L 204 (217)
..+.+|+.+++..+ ++. +.. .+.++++|+.+
T Consensus 363 ~~C~~L~~i~lp~~-~~~-~~~--~F~~c~~L~~I 393 (394)
T 4fs7_A 363 QGCINLKKVELPKR-LEQ-YRY--DFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEEEEEGG-GGG-GGG--GBCTTCEEEEE
T ss_pred hCCCCCCEEEECCC-CEE-hhh--eecCCCCCcEE
Confidence 99999999999754 332 333 67788877654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.0017 Score=45.02 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=43.8
Q ss_pred CEEEccCCCCC-ccchHHhhcCCCCCEEEccCccccCccchHhhcCCCCCCEEEccCCcCc
Q 045099 127 KILNLGNNRLN-DSILSYLNTLTSLTTLILCDNSIEGSRTKQGLANLRYLQVLDLSGNPIT 186 (217)
Q Consensus 127 ~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 186 (217)
..++-+++.++ ..+|..+ -.+|+.|+|++|+|+ .++...|..+++|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 47788888886 2455432 246899999999998 477667888999999999999876
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.00 E-value=0.0085 Score=48.76 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=81.7
Q ss_pred CCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCCccchHHhhcCCCCCEEEccCccccCccchHh
Q 045099 89 LSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLNDSILSYLNTLTSLTTLILCDNSIEGSRTKQG 168 (217)
Q Consensus 89 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 168 (217)
...+..+..|+.+.+..+ +...... .+..+..|+.+.+..+ ++......+..+.+|+.+.+..+ ++ .++...
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~----~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~a 281 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDG----AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLL 281 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTT----TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTT
T ss_pred ecccccccccceeeeccc-eeEEccc----cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccc
Confidence 345566777888887654 3333333 6778889999998776 55444567788899999999654 44 455567
Q ss_pred hcCCCCCCEEEccCCcCcccccccccccCCCCCCEEeccCC
Q 045099 169 LANLRYLQVLDLSGNPITGRFIARLGLSSLRNLKRLDLSNN 209 (217)
Q Consensus 169 ~~~l~~L~~L~L~~n~l~~~~p~~~~l~~l~~L~~L~l~~N 209 (217)
+..+.+|+.+.+.++.++..-.. .+.++.+|+.+.|..+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~--aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPR--VFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTT--TTTTCTTCCEEECCTT
T ss_pred cccccccccccccccccceehhh--hhcCCCCCCEEEcCcc
Confidence 89999999999998888854344 8889999999999654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.88 E-value=0.0027 Score=43.95 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=22.1
Q ss_pred CccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCCCCC
Q 045099 97 ELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNNRLN 137 (217)
Q Consensus 97 ~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (217)
+|++|+|++|.|+...+. .|..+++|++|+|.+|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence 456666666666665554 5555666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.24 E-value=12 Score=23.98 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=32.1
Q ss_pred CceeecCCCCCCCCCccEEECCCCcCCCccCcchhhcccCCCCCCEEEccCC
Q 045099 83 GVIILDLSLFPPFQELQSLDLSENWFGGVSESKAYNSSGNLKQLKILNLGNN 134 (217)
Q Consensus 83 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~l~~L~~L~L~~n 134 (217)
++..+....|..+..|+.+.+..+ ++..... .|..+.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~----aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDG----MFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTT----SSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHH----HHhccCCccEEEEcCC
Confidence 445566677888888888888764 4444444 6777888888877653
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=29.95 E-value=18 Score=15.88 Aligned_cols=11 Identities=27% Similarity=0.912 Sum_probs=7.9
Q ss_pred CCCccccceEE
Q 045099 44 SDCCDWERLKC 54 (217)
Q Consensus 44 ~~~c~w~gv~c 54 (217)
...|+|+|...
T Consensus 5 dgacswrglen 15 (23)
T 3ox7_P 5 DGACSWRGLEN 15 (26)
T ss_pred Ccccccccchh
Confidence 35799998754
No 167
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=21.70 E-value=58 Score=15.18 Aligned_cols=17 Identities=35% Similarity=1.023 Sum_probs=11.7
Q ss_pred cCCCcCCCCCCCccccc
Q 045099 35 LTSWVDDGISDCCDWER 51 (217)
Q Consensus 35 l~~W~~~~~~~~c~w~g 51 (217)
+.-|..-....||.|.-
T Consensus 4 ltfw~ck~~keccgwn~ 20 (29)
T 2gx1_A 4 LTFWKCKNKKECCGWNA 20 (29)
T ss_dssp CSSSCCSSTTSBSSCCC
T ss_pred eEEEEecCCcccccccc
Confidence 45676644568999974
Done!