Query 045101
Match_columns 153
No_of_seqs 117 out of 289
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5608 LEA14-like dessication 99.9 1.7E-24 3.6E-29 161.9 15.3 127 11-140 22-151 (161)
2 smart00769 WHy Water Stress an 99.9 2.1E-24 4.6E-29 152.1 13.3 98 26-123 2-99 (100)
3 PF03168 LEA_2: Late embryogen 99.8 5.5E-18 1.2E-22 117.3 11.9 97 44-140 1-101 (101)
4 PLN03160 uncharacterized prote 98.7 1.5E-06 3.2E-11 69.4 15.3 103 20-124 65-179 (219)
5 PF11797 DUF3324: Protein of u 96.4 0.18 3.9E-06 37.4 12.7 104 20-143 26-130 (140)
6 PF07705 CARDB: CARDB; InterP 95.5 0.19 4.2E-06 33.7 8.5 72 21-97 1-72 (101)
7 PF07092 DUF1356: Protein of u 95.1 0.099 2.1E-06 42.4 7.2 62 39-100 124-185 (238)
8 PF11906 DUF3426: Protein of u 92.4 1.9 4.2E-05 31.7 9.3 73 23-95 52-135 (149)
9 PF00927 Transglut_C: Transglu 87.1 3 6.6E-05 28.9 6.3 66 30-95 6-75 (107)
10 PRK09525 lacZ beta-D-galactosi 82.6 2.8 6E-05 40.7 5.7 49 43-93 638-687 (1027)
11 PF12751 Vac7: Vacuolar segreg 80.9 4.6 0.0001 35.0 5.9 64 4-69 315-378 (387)
12 PF06280 DUF1034: Fn3-like dom 80.4 17 0.00037 25.3 10.4 54 72-136 56-111 (112)
13 PF12505 DUF3712: Protein of u 80.3 3.3 7.2E-05 29.7 4.2 42 23-64 83-125 (125)
14 PF12505 DUF3712: Protein of u 77.5 23 0.0005 25.3 8.8 75 71-150 3-81 (125)
15 PF10633 NPCBM_assoc: NPCBM-as 77.5 17 0.00036 23.6 7.4 59 38-99 4-63 (78)
16 PRK10340 ebgA cryptic beta-D-g 77.3 6.3 0.00014 38.2 6.2 50 44-94 613-663 (1021)
17 PF08102 Antimicrobial_7: Scor 76.5 2 4.2E-05 25.6 1.6 13 5-17 28-40 (43)
18 PHA02516 W baseplate wedge sub 73.7 14 0.0003 25.8 5.7 44 4-48 52-95 (103)
19 PF07233 DUF1425: Protein of u 71.6 30 0.00064 23.7 9.1 65 23-93 11-79 (94)
20 PF08626 TRAPPC9-Trs120: Trans 70.9 9.3 0.0002 37.6 5.7 52 40-95 652-704 (1185)
21 PF12690 BsuPI: Intracellular 70.4 5.8 0.00013 26.7 3.1 52 41-94 2-68 (82)
22 PF11622 DUF3251: Protein of u 64.3 25 0.00055 27.1 5.8 41 41-83 78-124 (165)
23 COG3121 FimC P pilus assembly 64.0 11 0.00024 30.3 4.0 46 43-94 165-210 (235)
24 PRK15253 putative fimbrial ass 64.0 2.4 5.3E-05 34.4 0.2 42 44-93 175-216 (242)
25 PF02753 PapD_C: Pili assembly 62.5 1.7 3.6E-05 27.7 -0.8 44 45-93 1-44 (68)
26 PHA00415 25 baseplate wedge su 62.3 48 0.001 24.3 6.8 48 4-52 70-118 (131)
27 PRK15285 putative fimbrial cha 61.0 11 0.00025 30.6 3.6 45 44-93 165-209 (250)
28 PRK15224 pili assembly chapero 56.3 16 0.00035 29.5 3.7 41 44-93 170-210 (237)
29 PRK10340 ebgA cryptic beta-D-g 54.7 2.2E+02 0.0047 27.9 12.0 113 20-144 205-329 (1021)
30 PRK11385 putativi pili assembl 54.1 23 0.0005 28.6 4.3 41 44-93 168-208 (236)
31 PRK09926 putative chaperone pr 54.1 16 0.00035 29.5 3.4 44 44-93 174-217 (246)
32 PF10296 DUF2404: Putative int 53.0 68 0.0015 21.6 6.4 45 3-48 16-61 (91)
33 TIGR02745 ccoG_rdxA_fixG cytoc 52.2 1.7E+02 0.0036 25.9 9.6 74 21-99 323-402 (434)
34 PF11611 DUF4352: Domain of un 50.4 80 0.0017 21.6 8.7 76 23-98 13-103 (123)
35 PRK15195 fimbrial chaperone pr 50.2 22 0.00048 28.5 3.6 40 44-93 164-203 (229)
36 PRK15211 fimbrial chaperone pr 47.9 29 0.00063 27.8 3.9 46 44-93 159-206 (229)
37 PRK15290 lfpB fimbrial chapero 47.9 22 0.00047 28.9 3.2 40 44-93 177-216 (243)
38 PRK15208 long polar fimbrial c 47.8 23 0.00051 28.2 3.4 41 44-93 159-199 (228)
39 PF11739 DctA-YdbH: Dicarboxyl 47.8 1.1E+02 0.0024 23.7 7.2 76 41-127 15-92 (207)
40 PF07977 FabA: FabA-like domai 46.5 87 0.0019 22.3 6.0 52 24-75 86-138 (138)
41 PRK15188 fimbrial chaperone pr 46.4 35 0.00076 27.4 4.2 38 44-91 165-202 (228)
42 PRK15246 fimbrial assembly cha 46.4 27 0.00058 28.1 3.5 39 45-93 155-193 (233)
43 PF14343 PrcB_C: PrcB C-termin 44.9 41 0.00089 21.0 3.6 34 29-62 18-51 (60)
44 PF05753 TRAP_beta: Translocon 44.9 1.4E+02 0.0031 23.0 7.9 72 20-97 19-98 (181)
45 PRK15295 fimbrial assembly cha 44.2 31 0.00066 27.6 3.5 41 44-93 158-198 (226)
46 PF08531 Bac_rhamnosid_N: Alph 44.1 24 0.00053 26.6 2.8 15 61-75 15-29 (172)
47 PRK15249 fimbrial chaperone pr 44.0 30 0.00065 28.1 3.5 45 44-94 177-221 (253)
48 PF05506 DUF756: Domain of unk 43.7 96 0.0021 20.6 5.5 45 42-94 21-65 (89)
49 PF07070 Spo0M: SpoOM protein; 43.2 1.7E+02 0.0037 23.4 9.0 52 69-127 69-120 (218)
50 PF13027 DUF3888: Protein of u 42.6 92 0.002 21.2 5.3 53 21-73 24-83 (88)
51 cd09030 DUF1425 Putative perip 42.4 89 0.0019 21.4 5.3 52 39-93 32-87 (101)
52 PF12723 DUF3809: Protein of u 42.3 41 0.00088 25.0 3.6 23 117-139 35-57 (134)
53 PF11614 FixG_C: IG-like fold 41.5 64 0.0014 22.5 4.5 57 37-100 29-88 (118)
54 PRK15192 fimbrial chaperone Bc 38.9 38 0.00082 27.3 3.3 40 45-93 164-203 (234)
55 PRK05641 putative acetyl-CoA c 38.7 53 0.0012 24.8 3.9 36 34-69 6-41 (153)
56 PRK15254 fimbrial chaperone pr 38.5 46 0.00099 26.9 3.7 44 44-93 155-199 (239)
57 PRK15299 fimbrial chaperone pr 38.2 45 0.00098 26.5 3.6 41 44-93 161-201 (227)
58 PRK15274 putative periplasmic 38.1 38 0.00083 27.7 3.3 43 45-93 168-210 (257)
59 PRK11530 hypothetical protein; 35.9 1.4E+02 0.0029 23.4 5.7 41 42-84 98-144 (183)
60 PRK15218 fimbrial chaperone pr 35.2 53 0.0011 26.3 3.6 41 44-93 160-200 (226)
61 PF06832 BiPBP_C: Penicillin-B 34.8 1.3E+02 0.0029 19.7 6.2 46 41-94 32-77 (89)
62 PF00354 Pentaxin: Pentaxin fa 33.7 86 0.0019 24.3 4.5 28 60-87 98-125 (195)
63 TIGR01750 fabZ beta-hydroxyacy 33.7 1.7E+02 0.0037 20.6 6.6 50 24-76 87-136 (140)
64 PF06030 DUF916: Bacterial pro 32.8 1.9E+02 0.004 20.8 8.0 20 80-99 87-106 (121)
65 PF11209 DUF2993: Protein of u 32.1 2.3E+02 0.005 21.6 8.1 96 7-107 13-112 (225)
66 PRK06789 flagellar motor switc 31.7 55 0.0012 21.8 2.6 15 62-76 44-58 (74)
67 PF09624 DUF2393: Protein of u 30.7 2.1E+02 0.0046 20.8 8.3 47 20-69 46-92 (149)
68 PF02883 Alpha_adaptinC2: Adap 30.4 75 0.0016 21.9 3.4 59 35-96 20-79 (115)
69 PRK09918 putative fimbrial cha 30.3 96 0.0021 24.7 4.4 45 44-93 156-200 (230)
70 PF10045 DUF2280: Uncharacteri 30.0 20 0.00042 25.6 0.3 24 1-24 1-24 (104)
71 PF08329 ChitinaseA_N: Chitina 29.7 1.4E+02 0.0031 22.0 4.9 34 38-77 37-70 (133)
72 PF10816 DUF2760: Domain of un 29.5 1.1E+02 0.0024 22.5 4.1 38 112-149 75-112 (125)
73 PF12371 DUF3651: Protein of u 28.9 33 0.00071 22.3 1.2 22 38-59 51-72 (73)
74 PRK10579 hypothetical protein; 27.9 1.3E+02 0.0028 21.0 4.1 44 55-98 45-89 (94)
75 PF06865 DUF1255: Protein of u 26.2 1.1E+02 0.0023 21.4 3.4 42 57-98 47-89 (94)
76 PF09087 Cyc-maltodext_N: Cycl 25.2 42 0.0009 23.1 1.2 16 37-52 35-50 (88)
77 PRK15233 putative fimbrial cha 24.7 74 0.0016 25.9 2.8 39 44-90 184-222 (246)
78 cd00493 FabA_FabZ FabA/Z, beta 24.6 2.3E+02 0.0051 19.2 7.0 49 24-75 78-126 (131)
79 COG2088 SpoVG Uncharacterized 24.6 2.5E+02 0.0054 19.5 5.1 61 25-97 2-67 (95)
80 PF04965 GPW_gp25: Gene 25-lik 24.4 1.7E+02 0.0037 19.5 4.3 42 6-48 47-90 (99)
81 PF13598 DUF4139: Domain of un 24.1 3.9E+02 0.0085 21.7 8.2 43 43-90 170-212 (317)
82 KOG2411 Aspartyl-tRNA syntheta 24.1 45 0.00097 30.4 1.5 26 51-76 504-529 (628)
83 PF08154 NLE: NLE (NUC135) dom 23.9 80 0.0017 20.0 2.3 33 86-118 16-50 (65)
84 PF13144 SAF_2: SAF-like 23.4 3.3E+02 0.0071 20.6 7.0 78 6-95 3-80 (196)
85 PF12733 Cadherin-like: Cadher 23.4 1.5E+02 0.0033 19.2 3.7 32 62-94 38-70 (88)
86 PRK00476 aspS aspartyl-tRNA sy 22.8 40 0.00086 30.9 0.9 24 54-77 467-490 (588)
87 TIGR00459 aspS_bact aspartyl-t 22.7 49 0.0011 30.4 1.5 21 56-76 464-484 (583)
88 PF14208 DUF4320: Domain of un 22.6 1.5E+02 0.0033 21.3 3.8 31 110-140 76-107 (116)
89 PF14321 DUF4382: Domain of un 22.6 3E+02 0.0065 19.8 6.3 14 22-35 20-33 (139)
90 PF04350 PilO: Pilus assembly 22.2 2.5E+02 0.0054 19.8 5.0 44 68-111 67-110 (144)
91 PF08770 SoxZ: Sulphur oxidati 21.1 2.9E+02 0.0063 19.1 6.7 48 33-80 7-64 (100)
92 PRK07018 flgA flagellar basal 21.0 4.3E+02 0.0093 20.9 6.8 62 3-69 32-95 (235)
93 PF11322 DUF3124: Protein of u 20.8 3.1E+02 0.0067 20.1 5.1 55 38-94 22-77 (125)
94 PF07944 DUF1680: Putative gly 20.8 2.2E+02 0.0048 25.4 5.3 56 43-98 430-496 (520)
95 PF00932 LTD: Lamin Tail Domai 20.5 2.9E+02 0.0062 18.7 5.0 55 20-85 9-63 (116)
96 PF02563 Poly_export: Polysacc 20.3 1.2E+02 0.0026 19.8 2.7 23 5-27 56-79 (82)
No 1
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=99.93 E-value=1.7e-24 Score=161.93 Aligned_cols=127 Identities=16% Similarity=0.283 Sum_probs=116.3
Q ss_pred hHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEE
Q 045101 11 YVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVL 90 (153)
Q Consensus 11 f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v 90 (153)
|+..-+.-+++|.++..+++|+.++..++++..+++|+|||+||||++|+.|++++||.++++|...++++||+++.+++
T Consensus 22 ~lS~~~i~~~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tv 101 (161)
T COG5608 22 HLSGCMIPVKKPGVESMKAKWGKVTNSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETV 101 (161)
T ss_pred HhhCCceEcCCCCceEEEEEEEEEeccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEE
Confidence 55566777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEechhHHHHHH-hhcCCC--ccceEEEEEEEEccCcccceeeeeeeEe
Q 045101 91 NVPVKVPHSVLVSLVK-DIARDW--DIDYLLEVGLIIDLPLIGNFTIPLSTQG 140 (153)
Q Consensus 91 ~vpv~v~~~~l~~~~~-~l~~~~--~i~Y~l~g~l~~~~p~~G~~~ip~~~~G 140 (153)
.+++++++..+++.++ .+.+++ .++|+++|.++++.- ...+|++..+
T Consensus 102 dv~l~~d~~~~ke~w~~hi~ngErs~Ir~~i~~~v~vg~~---d~eVpi~~~~ 151 (161)
T COG5608 102 DVPLRLDNSKIKEWWVTHIENGERSTIRVRIKGVVKVGGM---DYEVPIKDNE 151 (161)
T ss_pred EEEEEEehHHHHHHHHHHhhccCcccEEEEEEEEEEEccE---EEEEEEEEcc
Confidence 9999999999999998 455554 499999999998754 4689998887
No 2
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=99.92 E-value=2.1e-24 Score=152.14 Aligned_cols=98 Identities=33% Similarity=0.511 Sum_probs=95.2
Q ss_pred EEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHH
Q 045101 26 LSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLV 105 (153)
Q Consensus 26 l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~ 105 (153)
+.+++|.++++.+++|.++++|+|||++||++++++|++++||+++++|.+++.++|||++++.+++|+++++..+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~~~~~~~ 81 (100)
T smart00769 2 VVDVEWGPVSGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFLAEALI 81 (100)
T ss_pred cceeEeccccceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehhHhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCccceEEEEEEE
Q 045101 106 KDIARDWDIDYLLEVGLI 123 (153)
Q Consensus 106 ~~l~~~~~i~Y~l~g~l~ 123 (153)
.++.+++.++|+++|+++
T Consensus 82 ~~l~~~~~~~y~l~g~l~ 99 (100)
T smart00769 82 WHIANGEEIPYRLDGKLT 99 (100)
T ss_pred HhhccCCCccEEEEEEEC
Confidence 999999999999999985
No 3
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.78 E-value=5.5e-18 Score=117.31 Aligned_cols=97 Identities=29% Similarity=0.454 Sum_probs=88.1
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhc---CCCccceEEEE
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIA---RDWDIDYLLEV 120 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~---~~~~i~Y~l~g 120 (153)
+++|+|||++++.+++++|+++++|.+++++...+.+.+|+++++.+.+++++++..+.+.+.++. ....++|+++|
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~~~l~~~~~~~~~~~v~~~~~g 80 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLPRLLKDLLAGRVPFDVTYRIRG 80 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHHHHHHhhhccccceEEEEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999988888887 57889999999
Q ss_pred EEE-EccCcccceeeeeeeEe
Q 045101 121 GLI-IDLPLIGNFTIPLSTQG 140 (153)
Q Consensus 121 ~l~-~~~p~~G~~~ip~~~~G 140 (153)
++. ++.++++..++|++.+|
T Consensus 81 ~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 81 TFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEcccceeeeEEEeEEeEC
Confidence 999 58887789999999986
No 4
>PLN03160 uncharacterized protein; Provisional
Probab=98.68 E-value=1.5e-06 Score=69.42 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=78.6
Q ss_pred cCCeEEEEEEEEceeccc---------ceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEE
Q 045101 20 RKPEASLSKFRLKGVSRE---------GVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVL 90 (153)
Q Consensus 20 ~~P~V~l~~v~~~~~~l~---------~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v 90 (153)
+.|++++.++++.++++. .+++.+.++|+|||..++..++.+-.++-+|..++++..+ ++.++|+++..+
T Consensus 65 k~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p-~g~~~ar~T~~l 143 (219)
T PLN03160 65 KDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTP-PGKAKARRTMRM 143 (219)
T ss_pred cCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcC-CcccCCCCeEEE
Confidence 889999999999988752 2457788899999999999999999999999999999975 488999998887
Q ss_pred EEeEEEechhH---HHHHHhhcCCCccceEEEEEEEE
Q 045101 91 NVPVKVPHSVL---VSLVKDIARDWDIDYLLEVGLII 124 (153)
Q Consensus 91 ~vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~~ 124 (153)
.+.+.+....+ ..+..|+ ..+.++..+..++..
T Consensus 144 ~~tv~~~~~~~~~~~~L~~D~-~~G~v~l~~~~~v~g 179 (219)
T PLN03160 144 NVTVDIIPDKILSVPGLLTDI-SSGLLNMNSYTRIGG 179 (219)
T ss_pred EEEEEEEeceeccchhHHHHh-hCCeEEEEEEEEEEE
Confidence 77766554432 3344443 345566665555544
No 5
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=96.41 E-value=0.18 Score=37.38 Aligned_cols=104 Identities=12% Similarity=0.147 Sum_probs=79.7
Q ss_pred cCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCE-EEEEEECCCCeeEeCCCeEEEEEeEEEec
Q 045101 20 RKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGR-VIATGTIPDPGSIKGNDKTVLNVPVKVPH 98 (153)
Q Consensus 20 ~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~-~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~ 98 (153)
..|++++.++.+..... +-.+...++||.+.-|.=-.+++.|+=.|. ++......+...+.+++.-.+.+++.-.
T Consensus 26 ~~p~L~l~~v~~~~~n~---~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~- 101 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQING---RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGK- 101 (140)
T ss_pred cCcccEEeeeeeeEECC---eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCc-
Confidence 68899999999865554 677899999999999999999999998885 5666666778999999998887775211
Q ss_pred hhHHHHHHhhcCCCccceEEEEEEEEccCcccceeeeeeeEeEEe
Q 045101 99 SVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVK 143 (153)
Q Consensus 99 ~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G~~~ip~~~~G~i~ 143 (153)
.| .+=.|+++..+.- |.-+-.|+++.+|+
T Consensus 102 --------~l---k~G~Y~l~~~~~~-----~~~~W~f~k~F~It 130 (140)
T PF11797_consen 102 --------KL---KPGKYTLKITAKS-----GKKTWTFTKDFTIT 130 (140)
T ss_pred --------Cc---cCCEEEEEEEEEc-----CCcEEEEEEEEEEC
Confidence 12 2226999999874 34477788877664
No 6
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=95.45 E-value=0.19 Score=33.67 Aligned_cols=72 Identities=19% Similarity=0.197 Sum_probs=48.5
Q ss_pred CCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEe
Q 045101 21 KPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVP 97 (153)
Q Consensus 21 ~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~ 97 (153)
+|.+.+........-..+..+.+.+.|+|-.... ...+...++++|..+.+-.. ..|+++.+..+.+.+...
T Consensus 1 ~pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i---~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 1 KPDLTVSITVSPSNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTI---PSLAPGESETVTFTWTPP 72 (101)
T ss_dssp ---EEE-EEEC-SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEE---SEB-TTEEEEEEEEEE-S
T ss_pred CCCEEEEEeeCCCcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEE---CCcCCCcEEEEEEEEEeC
Confidence 5777773222223335678899999999988777 77889999999999944333 588999999998888665
No 7
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=95.15 E-value=0.099 Score=42.42 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=55.5
Q ss_pred eEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechh
Q 045101 39 VDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSV 100 (153)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~ 100 (153)
..+.-.+.|+|||=+++.+.+++-++......++++.......|++.+++.+.+.+.....+
T Consensus 124 l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t~i~~ 185 (238)
T PF07092_consen 124 LNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKTTIGD 185 (238)
T ss_pred EEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeEEecC
Confidence 46788999999999999999999999999999999999999999999998888877777543
No 8
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=92.43 E-value=1.9 Score=31.66 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=57.3
Q ss_pred eEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEE-ECCEEEEEEECCC----------CeeEeCCCeEEEE
Q 045101 23 EASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLK-SDGRVIATGTIPD----------PGSIKGNDKTVLN 91 (153)
Q Consensus 23 ~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~-lng~~ia~G~~~~----------~~~Ipa~g~~~v~ 91 (153)
.+.+.+.++.......-.+.++..|.|-.+++.++=.+.-++. .+|+.+++=...- ...+|++++..+.
T Consensus 52 ~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~ 131 (149)
T PF11906_consen 52 ALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFR 131 (149)
T ss_pred eEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEE
Confidence 3455555555555455679999999999999999999999999 9999888866622 5679999988888
Q ss_pred EeEE
Q 045101 92 VPVK 95 (153)
Q Consensus 92 vpv~ 95 (153)
+.+.
T Consensus 132 ~~~~ 135 (149)
T PF11906_consen 132 LRLE 135 (149)
T ss_pred EEee
Confidence 7764
No 9
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=87.14 E-value=3 Score=28.85 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=42.0
Q ss_pred EEceecccceEEEEEEEEECCCCCCccccc---EEEEEEECCEEEEE-EECCCCeeEeCCCeEEEEEeEE
Q 045101 30 RLKGVSREGVDYLADVSIDNPYSHSIPICE---ISYVLKSDGRVIAT-GTIPDPGSIKGNDKTVLNVPVK 95 (153)
Q Consensus 30 ~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~---l~y~l~lng~~ia~-G~~~~~~~Ipa~g~~~v~vpv~ 95 (153)
++.+----|.+|.+.++++||-+.+|.=.. -...++-+|..-.. .......+|+++++..+++.++
T Consensus 6 ~~~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 6 KLPGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EEESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred EECCCccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 343334478899999999999887743222 33455777886533 3334557999999998888874
No 10
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=82.64 E-value=2.8 Score=40.68 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=41.3
Q ss_pred EEEEEECCCCC-CcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 43 ADVSIDNPYSH-SIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 43 ~~l~V~NPN~~-~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
..++|.|-|.| .|.=-.+.|+|..||+.+.+|.. . ..|+++.+..+++|
T Consensus 638 ~~~~i~N~~~F~~l~~~~~~w~~~~~G~~~~~g~~-~-~~~~p~~~~~i~l~ 687 (1027)
T PRK09525 638 LTIEVTSEYLFRHSDNELLHWSVALDGKPLASGEV-P-LDLAPQGSQRITLP 687 (1027)
T ss_pred cEEEEEEcccCCcccccEEEEEEEECCEEEEeeeE-c-cccCCCCceEEecC
Confidence 48999999998 34444678899999999999996 3 58999999999998
No 11
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=80.93 E-value=4.6 Score=35.03 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=46.0
Q ss_pred hhHHhhhhHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCE
Q 045101 4 LVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGR 69 (153)
Q Consensus 4 ~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~ 69 (153)
++.-+-+|+..-.- +.=.|+|..|+=.=++-+++-|.++++=.|||=|++.|+.++.+++.--.
T Consensus 315 ~ig~~~gFv~AttK--pL~~v~v~~I~NVlaS~qELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~ 378 (387)
T PF12751_consen 315 VIGFAIGFVFATTK--PLTDVQVVSIQNVLASEQELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSR 378 (387)
T ss_pred HHHHHHHhhhhcCc--ccccceEEEeeeeeeccceEEEeeEEEEECCCeEEEEeccceeeeEecCC
Confidence 35666777765442 11256666666555667777888888889999999999999999986443
No 12
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=80.44 E-value=17 Score=25.32 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=30.3
Q ss_pred EEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEEEEEEEEccCccc--ceeeee
Q 045101 72 ATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIG--NFTIPL 136 (153)
Q Consensus 72 a~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G--~~~ip~ 136 (153)
......+.++|||+++..++|.++++-. +.. .-.+-+.|-+.+.-- -| .++||+
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~~-~~~---------~~~~~~eG~I~~~~~-~~~~~lsIPy 111 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPSG-LDA---------SNGPFYEGFITFKSS-DGEPDLSIPY 111 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--GG-GHH---------TT-EEEEEEEEEESS-TTSEEEEEEE
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehhc-CCc---------ccCCEEEEEEEEEcC-CCCEEEEeee
Confidence 4556778899999999999999888542 111 334566777776422 23 245554
No 13
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=80.32 E-value=3.3 Score=29.73 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=34.0
Q ss_pred eEEEEEEEEceec-ccceEEEEEEEEECCCCCCcccccEEEEE
Q 045101 23 EASLSKFRLKGVS-REGVDYLADVSIDNPYSHSIPICEISYVL 64 (153)
Q Consensus 23 ~V~l~~v~~~~~~-l~~~~~~~~l~V~NPN~~~L~i~~l~y~l 64 (153)
.+++.++++..-. .++..+...+.+.||-++.+.+..++++|
T Consensus 83 g~~I~~~~v~~~~~~~g~~~~~~~~l~NPS~~ti~lG~v~~~l 125 (125)
T PF12505_consen 83 GFTISDFDVTGGTPADGINLNATVTLPNPSPLTIDLGNVTLNL 125 (125)
T ss_pred CceEeeEEeecCCCCCcEEEEEEEEEcCCCeEEEEeccEEEeC
Confidence 4558888876555 57889999999999999999888887764
No 14
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=77.52 E-value=23 Score=25.27 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=45.3
Q ss_pred EEEEECCCCeeEeCCCeEEEEEeEEEe---chhHHHHHHhhcCCCccceEEEEEEEEccCcccceeee-eeeEeEEeCCC
Q 045101 71 IATGTIPDPGSIKGNDKTVLNVPVKVP---HSVLVSLVKDIARDWDIDYLLEVGLIIDLPLIGNFTIP-LSTQGEVKLPT 146 (153)
Q Consensus 71 ia~G~~~~~~~Ipa~g~~~v~vpv~v~---~~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p~~G~~~ip-~~~~G~i~lp~ 146 (153)
++.-..++ ..+.+++...+ +...+. ...+-+..+++-..+++.++++|+-.+ . +|.+.++ +.-+++++|+.
T Consensus 3 f~~~~lP~-~~~~~~~~~~~-~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~~~~--~-~g~l~~~~i~~~k~i~l~G 77 (125)
T PF12505_consen 3 FATLDLPQ-IKIKGNGTISI-IDQTLTITDQDAFTQFVTALLFNEEVTLTLRGKTDT--H-LGGLPFSGIPFDKTITLKG 77 (125)
T ss_pred eEEEECCC-EEecCCceEEE-eeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEeeeE--E-EccEEEEEEeecceeeccc
Confidence 44444444 33344444444 444444 344566667777788899999999543 3 5555554 55566888888
Q ss_pred Cccc
Q 045101 147 LTDF 150 (153)
Q Consensus 147 l~~~ 150 (153)
+..+
T Consensus 78 ln~l 81 (125)
T PF12505_consen 78 LNGL 81 (125)
T ss_pred cCCC
Confidence 7654
No 15
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=77.52 E-value=17 Score=23.63 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=33.0
Q ss_pred ceEEEEEEEEECCCCCCcccccEEEEEEE-CCEEEEEEECCCCeeEeCCCeEEEEEeEEEech
Q 045101 38 GVDYLADVSIDNPYSHSIPICEISYVLKS-DGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHS 99 (153)
Q Consensus 38 ~~~~~~~l~V~NPN~~~L~i~~l~y~l~l-ng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~ 99 (153)
|.+..+++.|.|...-++ .++...+.+ +|=....+. .....|+++.+..+.+.|+++-.
T Consensus 4 G~~~~~~~tv~N~g~~~~--~~v~~~l~~P~GW~~~~~~-~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPL--TNVSLSLSLPEGWTVSASP-ASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-B--SS-EEEEE--TTSE---EE-EEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCce--eeEEEEEeCCCCccccCCc-cccccCCCCCEEEEEEEEECCCC
Confidence 567889999999886665 555555553 444422222 22238999999999999988754
No 16
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=77.34 E-value=6.3 Score=38.24 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=41.6
Q ss_pred EEEEECCCCC-CcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101 44 DVSIDNPYSH-SIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 44 ~l~V~NPN~~-~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv 94 (153)
.++|+|-+.| .|.=-.+.|+|..||+.+.+|..+ ...|+++++..+++|+
T Consensus 613 ~~~i~N~~~F~~l~~~~~~w~l~~dG~~~~~g~~~-~~~i~p~~~~~v~l~~ 663 (1021)
T PRK10340 613 ELKVENKLWFTNLDDYTLHAEVRAEGETLASGQIK-LRDVAPNSEAPLQITL 663 (1021)
T ss_pred EEEEEECccCCCccccEEEEEEEECCEEEEEeeec-cCccCCCCceEEEecC
Confidence 7999999997 344446788889999999999954 4689999999999985
No 17
>PF08102 Antimicrobial_7: Scorpion antimicrobial peptide ; InterPro: IPR012526 This family consists of antimicrobial peptides secreted by scorpions. Novel antimicrobial peptides have been isolated from scorpions, namely the opistoporin [] and the pandinin []. These peptides form essentially helical structures and demonstrate high antimicrobial activity against Gram-negative and Gram-positive bacteria respectively.; GO: 0005576 extracellular region
Probab=76.55 E-value=2 Score=25.58 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=11.0
Q ss_pred hHHhhhhHhhhhc
Q 045101 5 VDKAKNYVTDKVT 17 (153)
Q Consensus 5 ~~~~~~f~~~k~~ 17 (153)
++-||+|++||++
T Consensus 28 lnAaknfVaeKiG 40 (43)
T PF08102_consen 28 LNAAKNFVAEKIG 40 (43)
T ss_pred HHHHHHHHHHHhC
Confidence 4567899999997
No 18
>PHA02516 W baseplate wedge subunit; Provisional
Probab=73.73 E-value=14 Score=25.85 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=32.4
Q ss_pred hhHHhhhhHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEE
Q 045101 4 LVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSID 48 (153)
Q Consensus 4 ~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~ 48 (153)
+..+.+..+.+.+..|| |++++..|++.......+.+.+...+.
T Consensus 52 ~~~~i~~~i~~aI~~~E-PRi~~~~V~v~~~~~g~l~i~i~~~~~ 95 (103)
T PHA02516 52 LRLQIYAACAMALMRWE-PRITLTRVQIERAADGRMTVDITGWHV 95 (103)
T ss_pred HHHHHHHHHHHHHHhcC-CCcEEEEEEEEECCCCeEEEEEEEEEc
Confidence 45667788889998888 999999999976654444555555553
No 19
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=71.57 E-value=30 Score=23.70 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=38.8
Q ss_pred eEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEE---ECCEEEEEE-ECCCCeeEeCCCeEEEEEe
Q 045101 23 EASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLK---SDGRVIATG-TIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 23 ~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~---lng~~ia~G-~~~~~~~Ipa~g~~~v~vp 93 (153)
.+++.+++... .+-...+.+.+.|-.+.++. +.|.++ -+|..+... ..-+...|+++++.++.-.
T Consensus 11 ~i~v~~~~~~~---~~g~~~~~~~l~N~~~~~~~---l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ 79 (94)
T PF07233_consen 11 GISVENPSTSR---VNGLLRAQATLSNKSSKPLT---LQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAV 79 (94)
T ss_dssp EEEEEEEEEEE---CCCEEEEEEEEEE-SSS-EE---EEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE
T ss_pred CEEEeccEEEe---eCCeEEEEEEEEECCCCcEE---EEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEE
Confidence 34555555432 24567888899999998887 567776 788888765 5666788888888777654
No 20
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=70.88 E-value=9.3 Score=37.61 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=39.3
Q ss_pred EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeE-eCCCeEEEEEeEE
Q 045101 40 DYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSI-KGNDKTVLNVPVK 95 (153)
Q Consensus 40 ~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~I-pa~g~~~v~vpv~ 95 (153)
...+.+.++||.+|+|.|.+++. ..+|..+.+ .+.++.| |+++...+.+..+
T Consensus 652 ~~~v~VtLqNPf~fel~I~~I~L--~~egv~fes--~~~s~~l~~p~s~~~v~L~g~ 704 (1185)
T PF08626_consen 652 PAEVKVTLQNPFKFELEISSISL--STEGVPFES--YPVSIVLLPPNSTQTVRLSGT 704 (1185)
T ss_pred eEEEEEEEECCccceEEEEEEEE--EEcCCcccc--ceeeeEecCCCcceEEEEEEE
Confidence 46788999999999999999875 566766633 2455667 8888888876654
No 21
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=70.39 E-value=5.8 Score=26.72 Aligned_cols=52 Identities=6% Similarity=0.140 Sum_probs=28.4
Q ss_pred EEEEEEEECCCCCCcccc---cEEEEEEEC------------CEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101 41 YLADVSIDNPYSHSIPIC---EISYVLKSD------------GRVIATGTIPDPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 41 ~~~~l~V~NPN~~~L~i~---~l~y~l~ln------------g~~ia~G~~~~~~~Ipa~g~~~v~vpv 94 (153)
+.+.+.|.|+.+.++.+. |..|++.+- |+.+.+.. ...+|+++.+.+.+..+
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal--~~~~l~pGe~~~~~~~~ 68 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQAL--QEETLEPGESLTYEETW 68 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhhee--eEEEECCCCEEEEEEEE
Confidence 678999999999999986 888888754 33444433 23567777666666544
No 22
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=64.34 E-value=25 Score=27.06 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=23.2
Q ss_pred EEEEEEEECCCCCCcccccEEEEEEE------CCEEEEEEECCCCeeEe
Q 045101 41 YLADVSIDNPYSHSIPICEISYVLKS------DGRVIATGTIPDPGSIK 83 (153)
Q Consensus 41 ~~~~l~V~NPN~~~L~i~~l~y~l~l------ng~~ia~G~~~~~~~Ip 83 (153)
-.++|+|.|++..+|| ++++.++- .|+++.....++.++.|
T Consensus 78 s~a~L~i~~~~~~pLp--af~~~veWG~ld~~t~k~l~~~~qsq~~~~~ 124 (165)
T PF11622_consen 78 SRATLRIQNLSSAPLP--AFSATVEWGQLDPTTGKPLEVDSQSQLINAP 124 (165)
T ss_dssp EEEEEEEEESSSS------EEEEEEEEEE-S-SSS--EEEEEEEEEEE-
T ss_pred cEEEEEEeCCCCCccc--CceeEEEEccccCCCCCccccchhceeEccc
Confidence 4578889999999888 78888873 45555555555444443
No 23
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.03 E-value=11 Score=30.28 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=37.2
Q ss_pred EEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101 43 ADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 43 ~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv 94 (153)
-.|+|.||-++=+.+.+++... +|+++. .....|+++++..+.++-
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~--~~~~~~----~~~~mv~P~s~~~~~l~~ 210 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV--GGRKLG----LNSGMVAPFSTRQFPLPS 210 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee--CceecC----CCcceECCCccceeecCC
Confidence 5789999999999999887666 888776 556788888888877773
No 24
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=64.00 E-value=2.4 Score=34.36 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=33.4
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.+.|.||-|+=+.+..+. ++|+.+. .+...|+++++..+.++
T Consensus 175 ~l~v~NpTPyyvtl~~l~----~~~~~~~----~~~~mi~Pfs~~~~~~~ 216 (242)
T PRK15253 175 TVIMKNDTANWITVTDVK----AGNTKIN----DQTIMLPPLSTQNINMK 216 (242)
T ss_pred EEEEECCCCcEEEeEeeE----ECCcccC----CCCceECCCCccEEecC
Confidence 489999999999997665 5787652 24578999999988865
No 25
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=62.49 E-value=1.7 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.316 Sum_probs=26.8
Q ss_pred EEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 45 VSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
|+|.||-|+=+.+..+. +++... .-.......|+++++..+.++
T Consensus 1 L~v~NpTPy~vtl~~~~----~~~~~~-~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLK----LNGGGK-KKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEE----ETHHHC-CEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeee----eccccc-ccccCCceEECCCCceEEecc
Confidence 68999999999888764 331111 222233338999999988876
No 26
>PHA00415 25 baseplate wedge subunit
Probab=62.26 E-value=48 Score=24.35 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=35.4
Q ss_pred hhHHhhhhHhhhhcCccCCeEEEEEEEEceecc-cceEEEEEEEEECCCC
Q 045101 4 LVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSR-EGVDYLADVSIDNPYS 52 (153)
Q Consensus 4 ~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l-~~~~~~~~l~V~NPN~ 52 (153)
+..+.+.-+.+.+..| .|++++..|++..-.. ....+.+..+|..-|+
T Consensus 70 ~~~~i~~~I~~AI~~~-EPRI~~~~V~v~~~~~~~~l~i~l~y~i~~tn~ 118 (131)
T PHA00415 70 TADTIERNIESAIRNY-EPRVYNLNVEVIPVYDDNSIIVTIYFSIIDNPD 118 (131)
T ss_pred HHHHHHHHHHHHHHHh-CcCeeeEEEEEEecCCCCEEEEEEEEEEcCCCC
Confidence 3455666677777777 8999999999866432 2367888888888776
No 27
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=60.97 E-value=11 Score=30.64 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=34.4
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.+.|.||-|+=+.+..+. +.++|+.+.. .+...|+++++..+.++
T Consensus 165 ~l~i~NPTPyyvtl~~l~--~~~~~~~~~~---~~~~mi~Pfs~~~~~~~ 209 (250)
T PRK15285 165 GYQVSNPTGYYVVLSNAS--NRMDGTPARG---FSPLVIAPKSNVTLGGD 209 (250)
T ss_pred EEEEECCCCcEEEeehee--eccCCeeccc---CCCceECCCCccEEEcc
Confidence 489999999999998764 3367776522 15578999999999877
No 28
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=56.33 E-value=16 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=32.6
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.|.|.||-|+=+.+.++ .++|+.+ +....|+++++..+.++
T Consensus 170 ~l~v~NpTPYyvtl~~l----~~~~~~~-----~~~~miaPfs~~~~~~~ 210 (237)
T PRK15224 170 KLKVENPTPFYMNLASV----TVGGKPI-----TGLEYIPPFADKTLNMP 210 (237)
T ss_pred EEEEECCCCcEEEeEeE----EECCccc-----CCceeECCCCccEEEcC
Confidence 38999999999999875 4688876 22356999999988876
No 29
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=54.71 E-value=2.2e+02 Score=27.93 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=62.3
Q ss_pred cCCeEEEEEEEEce-ecc--cceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEE
Q 045101 20 RKPEASLSKFRLKG-VSR--EGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKV 96 (153)
Q Consensus 20 ~~P~V~l~~v~~~~-~~l--~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v 96 (153)
..|.+.|.++.+.. +.. ..+++.+.+++.|..+-+... .+.+.+.-.+..++++... ...+.+ ...+.+.+.+
T Consensus 205 ~~p~~~I~d~~v~t~l~~~~~~a~l~v~v~~~n~~~~~~~~-~v~~~l~d~~~~v~~~~~~-~~~~~~--~~~~~~~~~i 280 (1021)
T PRK10340 205 GKPLTHINDFTVRTDFDEDYCDATLSCEVVLENLAASPVVT-TLEYTLFDGERVVHSSAID-HLAIEK--LTSASFAFTV 280 (1021)
T ss_pred EeCCceEEeeEEEeeccCccCceEEEEEEEEecCCCCccce-EEEEEEECCCceEEEEeec-eeecCC--CceEEEEEEc
Confidence 56888999888864 222 346888888998865443332 5677776556555554422 122222 2334444444
Q ss_pred echhHHHHHHhhcCCCccceEEEEEEEE---------ccCcccceeeeeeeEeEEeC
Q 045101 97 PHSVLVSLVKDIARDWDIDYLLEVGLII---------DLPLIGNFTIPLSTQGEVKL 144 (153)
Q Consensus 97 ~~~~l~~~~~~l~~~~~i~Y~l~g~l~~---------~~p~~G~~~ip~~~~G~i~l 144 (153)
.-..+ + ....+-=|+|...+.- ... +|-.+|-++. |.+-|
T Consensus 281 ~~p~l---W---s~e~P~LY~l~v~l~~~~g~~~d~~~~~-~GfR~iei~~-~~f~l 329 (1021)
T PRK10340 281 EQPQQ---W---SAESPYLYHLVMTLKDANGNVLEVVPQR-VGFRDIKVRD-GLFWI 329 (1021)
T ss_pred CCCCc---C---CCCCCeeEEEEEEEEcCCCCEEEEEEee-eEEEEEEEEC-CEEEE
Confidence 32211 1 2344444888877642 234 6766776653 33433
No 30
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=54.10 E-value=23 Score=28.58 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=31.9
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.+.|.||-|+=+.+..+ .++|+.+. ....|+++++..+.++
T Consensus 168 ~l~v~NpTPyyvtl~~l----~~~~~~~~-----~~~mi~Pfs~~~~~~~ 208 (236)
T PRK11385 168 GVQLTNPTPYYINLIQV----SVNGKALS-----NAGVVPPKSQRQTSWC 208 (236)
T ss_pred EEEEECCCCcEEEEEeE----EECCcccC-----CCceECCCCccEEecc
Confidence 38899999999999665 45787651 2357999999998875
No 31
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=54.06 E-value=16 Score=29.46 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=33.7
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.|+|.||-++=+.+..+... .+|+.+.. +...|+++++..+.++
T Consensus 174 ~L~v~Nptpy~itl~~l~~~--~~g~~~~~----~~~mi~P~s~~~~~l~ 217 (246)
T PRK09926 174 SLRVTNPTPYYVSFSSGDLE--AGGKRYPV----DSKMIAPFSDESMKVK 217 (246)
T ss_pred EEEEECCCceEEEEEeeeee--cCCeeccc----CcceECCCCcceEecC
Confidence 39999999999999876554 36776432 2358999999999876
No 32
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=53.02 E-value=68 Score=21.58 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=30.6
Q ss_pred hhhHHhhhhHhhhhcCccCCeEEEEEEEEceecccc-eEEEEEEEEE
Q 045101 3 QLVDKAKNYVTDKVTNMRKPEASLSKFRLKGVSREG-VDYLADVSID 48 (153)
Q Consensus 3 ~~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~-~~~~~~l~V~ 48 (153)
.+.++.++.+..|+..+..|..= .+++++++++-. .-..-..++.
T Consensus 16 ~~~~~i~~~L~~kL~~i~~P~fl-~~i~v~~~~lG~~~P~i~~~~~~ 61 (91)
T PF10296_consen 16 AFRDKIKEKLQKKLNKIKLPSFL-DEISVTELDLGDSPPIISNVRIP 61 (91)
T ss_pred HHHHHHHHHHHHHHccccCCCcc-CcEEEEEEECCCCCCEEEecccc
Confidence 56788999999999999999754 666666666433 3333444443
No 33
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=52.15 E-value=1.7e+02 Score=25.87 Aligned_cols=74 Identities=22% Similarity=0.183 Sum_probs=49.0
Q ss_pred CCeEEEEEEEEce-----ecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECC-CCeeEeCCCeEEEEEeE
Q 045101 21 KPEASLSKFRLKG-----VSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIP-DPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 21 ~P~V~l~~v~~~~-----~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~-~~~~Ipa~g~~~v~vpv 94 (153)
.+.++++=.+-.+ .+...++=...++|.|-...+ .+|++.++|.+=++-... +.++|+|++..++.|-+
T Consensus 323 r~~~~~~v~r~r~~l~~~~~~g~i~N~Y~~~i~Nk~~~~-----~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v 397 (434)
T TIGR02745 323 REPMDLNVLRDRNLLYVRNSDGVVENTYTLKILNKTEQP-----HEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFL 397 (434)
T ss_pred CCceEEEEEecCCcceEECCCCcEEEEEEEEEEECCCCC-----EEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEE
Confidence 3444444444433 233446677889999977655 567888777543333333 37899999999999999
Q ss_pred EEech
Q 045101 95 KVPHS 99 (153)
Q Consensus 95 ~v~~~ 99 (153)
+++..
T Consensus 398 ~~~~~ 402 (434)
T TIGR02745 398 RTPPD 402 (434)
T ss_pred Eechh
Confidence 88854
No 34
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=50.35 E-value=80 Score=21.60 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=45.0
Q ss_pred eEEEEEEEEcee-------cccceEEEEEEEEECCCCCCcccccEEEEEE-ECCEEEEE--EECCC-----CeeEeCCCe
Q 045101 23 EASLSKFRLKGV-------SREGVDYLADVSIDNPYSHSIPICEISYVLK-SDGRVIAT--GTIPD-----PGSIKGNDK 87 (153)
Q Consensus 23 ~V~l~~v~~~~~-------~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~-lng~~ia~--G~~~~-----~~~Ipa~g~ 87 (153)
++.+.+++...- .-.+.-+.++++|.|..+-++.+....+.|. -+|...-. ..... ..+|+++.+
T Consensus 13 ~vtV~~v~~~~~~~~~~~~~~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~ 92 (123)
T PF11611_consen 13 EVTVNSVEKTDGSNEYSKPKEGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGES 92 (123)
T ss_dssp EEEEEEE-EEE-SS-BEES---SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-E
T ss_pred EEEEEEEEeecCCccccccCCCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCE
Confidence 677777743332 1223457999999999999999999999886 55555443 22222 368899888
Q ss_pred EEEEEeEEEec
Q 045101 88 TVLNVPVKVPH 98 (153)
Q Consensus 88 ~~v~vpv~v~~ 98 (153)
..-.+-..++-
T Consensus 93 ~~g~l~F~vp~ 103 (123)
T PF11611_consen 93 VTGKLVFEVPK 103 (123)
T ss_dssp EEEEEEEEEST
T ss_pred EEEEEEEEECC
Confidence 87777766653
No 35
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=50.17 E-value=22 Score=28.45 Aligned_cols=40 Identities=10% Similarity=0.284 Sum_probs=31.9
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.|.|.||-|+=+.+..+. ++|..+ +...|+++++..+.+|
T Consensus 164 ~L~v~NptPy~vtl~~l~----v~~~~i------~~~mv~P~s~~~~~l~ 203 (229)
T PRK15195 164 HLKVHNPSPYYVTLVNLQ----VGSQKL------GNAMIAPKVNSQIPLP 203 (229)
T ss_pred EEEEECCCceEEEEEEEE----ECCccc------CceEECCCCceEEEcC
Confidence 599999999999997655 467665 1247999999999877
No 36
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=47.90 E-value=29 Score=27.84 Aligned_cols=46 Identities=9% Similarity=0.152 Sum_probs=33.2
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEEC--CCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTI--PDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~--~~~~~Ipa~g~~~v~vp 93 (153)
.+.|.||-|+=+.+..+. ++|..+..... .....|+++++..+.++
T Consensus 159 ~l~v~NpTPyyitl~~l~----v~~~~~~~~~~~~~~~~mi~Pfs~~~~~~~ 206 (229)
T PRK15211 159 ETYLKNPTPYYFAVTGVK----LNGQPVKLSDRVMNEIAQLAPFSEVSLGKL 206 (229)
T ss_pred EEEEECCCCcEEEeEeEE----ECCeeccccccccccceeECCCCcceEecC
Confidence 389999999999997665 68887632111 13357999999888764
No 37
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=47.86 E-value=22 Score=28.88 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=32.2
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.+.|.||-|+=+.+..+ .++|+.+ +...|+++++..+.++
T Consensus 177 ~l~v~NptPyyvtl~~l----~v~g~~~------~~~mI~P~s~~~~~~~ 216 (243)
T PRK15290 177 NLIAENPNPIHISVMDV----IVDGHDV------PLNMIRPFETLTLPLP 216 (243)
T ss_pred EEEEECCCcEEEEEEEE----eecCccc------CCceECCCCceEEEcC
Confidence 49999999999999866 3577755 2368999999988876
No 38
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=47.83 E-value=23 Score=28.22 Aligned_cols=41 Identities=17% Similarity=0.485 Sum_probs=32.7
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.|.|.||-|+=+.+..+. ++|+.+. ....|+++++..+.++
T Consensus 159 ~l~v~Nptpy~vtl~~l~----~~g~~~~-----~~~mi~P~s~~~~~l~ 199 (228)
T PRK15208 159 QIKVENPSAFNLTFNQFY----ANGRDIE-----KAGMVPAKGSLNIELP 199 (228)
T ss_pred EEEEECCCccEEEEEEEE----ECCcccC-----CCceECCCCccEEEcc
Confidence 489999999999998765 4777542 2468999999998876
No 39
>PF11739 DctA-YdbH: Dicarboxylate transport; InterPro: IPR021730 In certain bacterial families this protein is expressed from the ydbH gene, and there is a suggestion that this is a form of DctA or dicarboxylate transport protein. Dicarboxylate transport proteins are found in aerobic bacteria which grow on succinate or other C4-dicarboxylates [].
Probab=47.79 E-value=1.1e+02 Score=23.67 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=49.1
Q ss_pred EEEEEEEECC--CCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEE
Q 045101 41 YLADVSIDNP--YSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLL 118 (153)
Q Consensus 41 ~~~~l~V~NP--N~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l 118 (153)
+.+++++..| .+-++.+.+.+.++. +|+- +-++..++- .... .+++++.--++.+++..... -...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~l~~~s~~l~-gG~v-----~~~~~~~~~-~~~~-~~~l~l~~idL~ell~~~~~---~~~~~ 83 (207)
T PF11739_consen 15 IRASFQLEAPNSEAGPLRLSNASAELL-GGRV-----SLEPLRLPL-ADKS-SATLKLENIDLAELLALQGQ---KGISA 83 (207)
T ss_pred eEEEEEEecCCccCCcEEEEEeEEEcc-CCEE-----EccceecCc-ccCe-EEEEEEcCCCHHHHHhhcCc---cceEE
Confidence 4444455444 466788888888776 5543 234567777 4444 88888888888888876643 22467
Q ss_pred EEEEEEccC
Q 045101 119 EVGLIIDLP 127 (153)
Q Consensus 119 ~g~l~~~~p 127 (153)
+|++.-.+|
T Consensus 84 tG~lsG~lP 92 (207)
T PF11739_consen 84 TGRLSGRLP 92 (207)
T ss_pred EEEEEEEEe
Confidence 777765555
No 40
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=46.51 E-value=87 Score=22.32 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=37.1
Q ss_pred EEEEEEEEceecccce-EEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEE
Q 045101 24 ASLSKFRLKGVSREGV-DYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGT 75 (153)
Q Consensus 24 V~l~~v~~~~~~l~~~-~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~ 75 (153)
..+.++++.+.=.-+- ++.+++++..-....-.+.-.+.++++||+.+++++
T Consensus 86 ~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~vdg~~v~~~~ 138 (138)
T PF07977_consen 86 AGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAYVDGELVAEAE 138 (138)
T ss_dssp EEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred ccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEEECCEEEEEEC
Confidence 4677777766666666 788888887744445557778999999999999864
No 41
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=46.38 E-value=35 Score=27.41 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=29.4
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEE
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLN 91 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~ 91 (153)
.+.|.||-||=+.+..+ .++|..+ +...|+++++..+.
T Consensus 165 ~l~v~NpTPyyvtl~~l----~v~~~~~------~~~mi~P~s~~~~~ 202 (228)
T PRK15188 165 QLTITNPSPYYVSMVEL----YSAGKKL------PNTMVPPKGAITLP 202 (228)
T ss_pred EEEEECCCCcEEEEEEE----EECCccc------CCceECCCCcceee
Confidence 48999999999999654 4688766 24689999997653
No 42
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=46.38 E-value=27 Score=28.12 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.2
Q ss_pred EEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 45 VSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
|.|.||-|+=+.+..+. ++|..+ +...|+++++..+.++
T Consensus 155 l~v~NpTPyyvtl~~l~----~~~~~~------~~~mi~P~s~~~~~~~ 193 (233)
T PRK15246 155 IRIVNPTSWYMSLTLTM----DNKKSI------GDIMVAPKTALDVPLT 193 (233)
T ss_pred EEEECCCCcEEEEEeEE----ECCccc------CcceECCCCccEEEcC
Confidence 89999999999997544 477654 2468999999999876
No 43
>PF14343 PrcB_C: PrcB C-terminal
Probab=44.94 E-value=41 Score=21.01 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=23.8
Q ss_pred EEEceecccceEEEEEEEEECCCCCCcccccEEE
Q 045101 29 FRLKGVSREGVDYLADVSIDNPYSHSIPICEISY 62 (153)
Q Consensus 29 v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y 62 (153)
+++.++...+-++.++++...|.+=..--..++|
T Consensus 18 I~v~~v~~~~~~i~V~~~~~~P~~~~~~~q~iTy 51 (60)
T PF14343_consen 18 IEVESVEETENTIVVYVKLTEPAPGEMVTQVITY 51 (60)
T ss_pred EEEEEEEEeCCEEEEEEEEECCCCCCEecccccC
Confidence 4455556667889999999999876655544443
No 44
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.87 E-value=1.4e+02 Score=22.99 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=54.0
Q ss_pred cCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCE-------EEEEEECCC-CeeEeCCCeEEEE
Q 045101 20 RKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGR-------VIATGTIPD-PGSIKGNDKTVLN 91 (153)
Q Consensus 20 ~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~-------~ia~G~~~~-~~~Ipa~g~~~v~ 91 (153)
..|.+-+.+--..+.-.+|.++.+.+.|+|-.+- -.|+|.+.+. .+.+|.... +-+||++++.+..
T Consensus 19 ~~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~------~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~ 92 (181)
T PF05753_consen 19 SPARLLVSKQILNKYLVEGEDVTVTYTIYNVGSS------AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHS 92 (181)
T ss_pred CCcEEEEEEeeccccccCCcEEEEEEEEEECCCC------eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEE
Confidence 4667877777777777789999999999999865 4788888773 567775444 4689998887766
Q ss_pred EeEEEe
Q 045101 92 VPVKVP 97 (153)
Q Consensus 92 vpv~v~ 97 (153)
+.++-.
T Consensus 93 ~vv~p~ 98 (181)
T PF05753_consen 93 YVVRPK 98 (181)
T ss_pred EEEeee
Confidence 666543
No 45
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=44.20 E-value=31 Score=27.57 Aligned_cols=41 Identities=5% Similarity=0.199 Sum_probs=32.3
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.|+|.||-|+=+.+..+. ++|..+ .....|+++++..+.++
T Consensus 158 ~l~v~NptPyyitl~~l~----~~~~~~-----~~~~mI~P~s~~~~~~~ 198 (226)
T PRK15295 158 VITVNNPTPYYMNFASVT----LNSHEV-----KSATFVPPKSSASFKLG 198 (226)
T ss_pred EEEEECCCceEEEEEEEE----ECCccc-----CCCceECCCCccEEEcc
Confidence 389999999999998764 477754 22467999999999876
No 46
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=44.07 E-value=24 Score=26.65 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=13.2
Q ss_pred EEEEEECCEEEEEEE
Q 045101 61 SYVLKSDGRVIATGT 75 (153)
Q Consensus 61 ~y~l~lng~~ia~G~ 75 (153)
.|+|+|||++++.|.
T Consensus 15 ~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 15 RYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEETTEEEEEE-
T ss_pred eEEEEECCEEeeCCc
Confidence 699999999999988
No 47
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=44.02 E-value=30 Score=28.12 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=34.0
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv 94 (153)
.|.|.||-++=+.+..+... ++|+.+.. ....|+++++..+.+|.
T Consensus 177 ~l~v~Nptpyyitl~~l~~~--~~~~~~~~----~~~mv~P~s~~~~~l~~ 221 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVK--VNGASYNL----DADMIAPFSSQTWWLPG 221 (253)
T ss_pred EEEEECCCceEEEeeeeeec--cCCeecCC----CCceECCCCccEEEccC
Confidence 39999999999999877653 35654321 34679999999998873
No 48
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=43.68 E-value=96 Score=20.59 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=32.1
Q ss_pred EEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101 42 LADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 42 ~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv 94 (153)
.+.|.+.|+...++ .+.++-|.- .+..+...+|+|+.+..+.+++
T Consensus 21 ~l~l~l~N~g~~~~-----~~~v~~~~y---~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 21 NLRLTLSNPGSAAV-----TFTVYDNAY---GGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred EEEEEEEeCCCCcE-----EEEEEeCCc---CCCCCEEEEECCCCEEEEEEee
Confidence 78888899866554 455554332 3355678899999998888876
No 49
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=43.19 E-value=1.7e+02 Score=23.38 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=41.6
Q ss_pred EEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhcCCCccceEEEEEEEEccC
Q 045101 69 RVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARDWDIDYLLEVGLIIDLP 127 (153)
Q Consensus 69 ~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~~~~p 127 (153)
..+++-....+++|+|+.+..+++.+.++|..=.. .....|.|+.+++++-.
T Consensus 69 ~~~~~~~v~~~f~I~~ge~~~iPF~~~lP~etPiT-------~~~~~v~l~T~LdI~~a 120 (218)
T PF07070_consen 69 VELARVRVSGPFTIEPGEEKEIPFSFPLPWETPIT-------EGGMRVWLRTGLDIAGA 120 (218)
T ss_pred EEEEEEEeCCCEEECCCCEEEEeEEEECCCCCCcc-------CCCcEEEEEEEEEeCCC
Confidence 46788889999999999999999999888763221 26788999999988643
No 50
>PF13027 DUF3888: Protein of unknown function (DUF3888)
Probab=42.62 E-value=92 Score=21.21 Aligned_cols=53 Identities=11% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCeEEEEEEEEceecc----cceEEEEEEEEEC---CCCCCcccccEEEEEEECCEEEEE
Q 045101 21 KPEASLSKFRLKGVSR----EGVDYLADVSIDN---PYSHSIPICEISYVLKSDGRVIAT 73 (153)
Q Consensus 21 ~P~V~l~~v~~~~~~l----~~~~~~~~l~V~N---PN~~~L~i~~l~y~l~lng~~ia~ 73 (153)
.|.++..++++.++.. .+-.|.++++|+. |-.-|.....|+|.+.-+|.++.+
T Consensus 24 ~~~~~~~~~~Il~i~r~~~~~~~~f~vti~v~~~~g~h~pp~g~d~ITf~i~~~~vkv~~ 83 (88)
T PF13027_consen 24 PPQYSPYCVKILEIKRVNGFRGFNFEVTIEVTTYEGAHNPPYGKDTITFEIDPNGVKVIK 83 (88)
T ss_pred CcccCcccceEEEEEEecCCCcEEEEEEEEEEeccCCcCCCcccEEEEEEeCCCcEEEEE
Confidence 3566556666655554 3446999999995 666677788888888866666543
No 51
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=42.41 E-value=89 Score=21.36 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=40.6
Q ss_pred eEEEEEEEEECCCCCCcccccEEEEEE---ECCEEEEEE-ECCCCeeEeCCCeEEEEEe
Q 045101 39 VDYLADVSIDNPYSHSIPICEISYVLK---SDGRVIATG-TIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 39 ~~~~~~l~V~NPN~~~L~i~~l~y~l~---lng~~ia~G-~~~~~~~Ipa~g~~~v~vp 93 (153)
-.+.+.+.+.|-.+.++.+ .|.++ -+|..+... ..-+...|+++++.++.--
T Consensus 32 g~~~~~~~l~N~~~~~~~l---~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ 87 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTL---QYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAV 87 (101)
T ss_pred CeEEEEEEEEeCCCCCEEE---EEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEE
Confidence 3578889999999988875 56665 788888887 7788888888887776543
No 52
>PF12723 DUF3809: Protein of unknown function (DUF3809); InterPro: IPR024219 This family of proteins has no known function. ; PDB: 3NQN_B.
Probab=42.31 E-value=41 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEEEEEccCcccceeeeeeeE
Q 045101 117 LLEVGLIIDLPLIGNFTIPLSTQ 139 (153)
Q Consensus 117 ~l~g~l~~~~p~~G~~~ip~~~~ 139 (153)
+++|.+.+..|++|..++||...
T Consensus 35 ~vrG~L~~~~pllGEv~lPF~Sr 57 (134)
T PF12723_consen 35 RVRGELRVPVPLLGEVDLPFRSR 57 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEE
T ss_pred eeEEEEeeccccccccccchhhe
Confidence 78999999999999999999863
No 53
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=41.55 E-value=64 Score=22.49 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=35.3
Q ss_pred cceEEEEEEEEECCCCCCcccccEEEEEEECC---EEEEEEECCCCeeEeCCCeEEEEEeEEEechh
Q 045101 37 EGVDYLADVSIDNPYSHSIPICEISYVLKSDG---RVIATGTIPDPGSIKGNDKTVLNVPVKVPHSV 100 (153)
Q Consensus 37 ~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng---~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~ 100 (153)
..++=...++|.|--.-+ ..|++.+.| ..+. + ....++|+|++...+.+-|+++...
T Consensus 29 g~I~N~Y~lkl~Nkt~~~-----~~~~i~~~g~~~~~l~-~-~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 29 GSIRNQYTLKLTNKTNQP-----RTYTISVEGLPGAELQ-G-PENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp -SEEEEEEEEEEE-SSS------EEEEEEEES-SS-EE--E-S--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred CeEEEEEEEEEEECCCCC-----EEEEEEEecCCCeEEE-C-CCcceEECCCCEEEEEEEEEECHHH
Confidence 335556788888887655 457777665 4442 2 5678999999999999999999874
No 54
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=38.94 E-value=38 Score=27.34 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=31.7
Q ss_pred EEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 45 VSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
+.|.||-|+=+.+..+ .++|+.+ .....|+++++..+.++
T Consensus 164 l~v~NpTPyyvtl~~l----~v~~~~~-----~~~~miaPfs~~~~~~~ 203 (234)
T PRK15192 164 ATVRNPTPYYVTLFLL----RANERAQ-----DNAGVVAPFATRQTDWC 203 (234)
T ss_pred EEEECCCCcEEEEEeE----EEcCccc-----CCCceECCCCccEEecc
Confidence 9999999999999765 4577753 23458999999988875
No 55
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=38.71 E-value=53 Score=24.76 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=29.9
Q ss_pred ecccceEEEEEEEEECCCCCCcccccEEEEEEECCE
Q 045101 34 VSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGR 69 (153)
Q Consensus 34 ~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~ 69 (153)
+..+|..+++.+.=.....|-+.++|-.|+++++..
T Consensus 6 ~~~~g~~~~v~v~~~~~~~~~itvnG~~y~V~vee~ 41 (153)
T PRK05641 6 VIVDGVEYEVEVEELGPGKFRVSFEGKTYEVEAKGL 41 (153)
T ss_pred EEECCEEEEEEEEeecCccEEEEECCEEEEEEEEEc
Confidence 355778888888877788899999999999999773
No 56
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=38.47 E-value=46 Score=26.91 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=32.5
Q ss_pred EEEEECCCCCCcccccEEEEEEECCE-EEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGR-VIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~-~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.++|.||-|+=+.+..+. ++|+ .+. + ..+...|+++++..+.++
T Consensus 155 ~l~v~NpTPYyitl~~l~----~~~~~~~~-~-~~~~~mi~Pfs~~~~~~~ 199 (239)
T PRK15254 155 HLTLRNPTPYYITVAWLG----ADRSHRLS-G-FREGVMVPPLGSLPLKAV 199 (239)
T ss_pred EEEEECCCceEEEeeeEE----ecCccccc-c-cCCCceECCCCceEEecc
Confidence 489999999999997555 5774 332 1 235578999999988764
No 57
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=38.22 E-value=45 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=31.7
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.|.|.||-++=+.+..+. ++|..+ .....|+++++..+.++
T Consensus 161 ~l~v~Nptpy~vtl~~l~----~~~~~~-----~~~~mv~P~s~~~~~l~ 201 (227)
T PRK15299 161 TLTVKNPTPYYMNFATLS----VGSQKV-----KAPRYVAPFGNAQYTLP 201 (227)
T ss_pred EEEEECCCccEEEEEeEE----ECCccc-----CCCceECCCCccEEEcC
Confidence 499999999999997664 466654 12457999999998876
No 58
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=38.10 E-value=38 Score=27.74 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=30.8
Q ss_pred EEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 45 VSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 45 l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
|.|.||-|+=+.+..+. +++..... . .+...|+++++..+.++
T Consensus 168 l~v~NpTPYyvtl~~i~----~~~~~~~~-~-~~~~mi~Pfs~~~~~l~ 210 (257)
T PRK15274 168 VIFDNPTPFYLVISNAG----SKENETAS-G-FKNLLIAPREKVTSPIK 210 (257)
T ss_pred EEEECCCCcEEEeeeeE----eccCcccc-c-CCCceECCCCccEEecc
Confidence 89999999999998655 33332110 1 14568999999999887
No 59
>PRK11530 hypothetical protein; Provisional
Probab=35.89 E-value=1.4e+02 Score=23.41 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCCcccccEEEEEE------ECCEEEEEEECCCCeeEeC
Q 045101 42 LADVSIDNPYSHSIPICEISYVLK------SDGRVIATGTIPDPGSIKG 84 (153)
Q Consensus 42 ~~~l~V~NPN~~~L~i~~l~y~l~------lng~~ia~G~~~~~~~Ipa 84 (153)
...|+|++.+.-+|| .++-.|+ ..|++......++.+++|+
T Consensus 98 rA~L~i~~~~~~~LP--Af~a~vewGqld~ttg~pl~~~~qsq~i~~~~ 144 (183)
T PRK11530 98 RATLRIQGESNDPLP--AFSATVEWGQLDGTTGNPLEVNVQSQLINAPA 144 (183)
T ss_pred EEEEEEecCCCCCCc--cceeEEEeccccCCCCCccccccccceeecCC
Confidence 455677788888888 6666666 3567777777777776665
No 60
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=35.22 E-value=53 Score=26.31 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=31.3
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.++|.||-|+=+.+..+. +++. + ..+...|+++++..+.++
T Consensus 160 ~l~v~NpTPyyitl~~l~----~~~~-~----~~~~~mi~Pfs~~~~~~~ 200 (226)
T PRK15218 160 SISVKNNSANWITIPEIK----AKSK-V----NKETLLLAPWSSQSITTT 200 (226)
T ss_pred EEEEECCCCcEEEeEeee----cCCc-c----cCCcceECCCCccEEEcc
Confidence 499999999999998775 3443 2 124568999999999875
No 61
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=34.82 E-value=1.3e+02 Score=19.73 Aligned_cols=46 Identities=9% Similarity=-0.091 Sum_probs=34.1
Q ss_pred EEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101 41 YLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 41 ~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv 94 (153)
-.+.+++.+..+ .+..++||+.++++...+...++......-.|.|
T Consensus 32 ~~l~l~a~~~~~--------~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 32 QPLVLKAAGGRG--------PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred ceEEEEEeCCCC--------cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEE
Confidence 344555555533 6788999999999999999888887666666665
No 62
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=33.73 E-value=86 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=20.6
Q ss_pred EEEEEEECCEEEEEEECCCCeeEeCCCe
Q 045101 60 ISYVLKSDGRVIATGTIPDPGSIKGNDK 87 (153)
Q Consensus 60 l~y~l~lng~~ia~G~~~~~~~Ipa~g~ 87 (153)
=.+++++||...........-.||++|+
T Consensus 98 G~~~ly~dG~~~~~~~~~~g~~i~~gG~ 125 (195)
T PF00354_consen 98 GRWQLYVDGVRLSSTGLATGHSIPGGGT 125 (195)
T ss_dssp TEEEEEETTEEEEEEESSTT--B-SSEE
T ss_pred cEEEEEECCEecccccccCCceECCCCE
Confidence 4678899999888777888889998876
No 63
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=33.70 E-value=1.7e+02 Score=20.65 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=35.3
Q ss_pred EEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEEC
Q 045101 24 ASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTI 76 (153)
Q Consensus 24 V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~ 76 (153)
..+.++++...-.-+.++.+++++.--. =.+.-++..++++|+.+++|+.
T Consensus 87 ~~~~~~kF~~~v~pGd~l~i~~~i~~~~---~~~~~~~~~~~~~g~~va~~~~ 136 (140)
T TIGR01750 87 AGIDKAKFRRPVVPGDQLILHAEFLKKR---RKIGKFKGEATVDGKVVAEAEI 136 (140)
T ss_pred eecceeEECCccCCCCEEEEEEEEEEcc---CCEEEEEEEEEECCEEEEEEEE
Confidence 3446777777666777788888876322 2455567778899999999875
No 64
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=32.80 E-value=1.9e+02 Score=20.75 Aligned_cols=20 Identities=15% Similarity=0.405 Sum_probs=17.4
Q ss_pred eeEeCCCeEEEEEeEEEech
Q 045101 80 GSIKGNDKTVLNVPVKVPHS 99 (153)
Q Consensus 80 ~~Ipa~g~~~v~vpv~v~~~ 99 (153)
++|||+++..|++.++++-.
T Consensus 87 Vtl~~~~sk~V~~~i~~P~~ 106 (121)
T PF06030_consen 87 VTLPPNESKTVTFTIKMPKK 106 (121)
T ss_pred EEECCCCEEEEEEEEEcCCC
Confidence 99999999999999987743
No 65
>PF11209 DUF2993: Protein of unknown function (DUF2993); InterPro: IPR021373 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.09 E-value=2.3e+02 Score=21.58 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=55.1
Q ss_pred HhhhhHhhhhcCccCCeEEEEEEEEc----eecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeE
Q 045101 7 KAKNYVTDKVTNMRKPEASLSKFRLK----GVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSI 82 (153)
Q Consensus 7 ~~~~f~~~k~~~~~~P~V~l~~v~~~----~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~I 82 (153)
.+...+.+++..-++|+|++.+.-+. .-+..++++.+.=-.... -.+.+. +.++.+.+..+..+.. -...+
T Consensus 13 ~i~~~l~~~~~~~~~~~V~i~g~P~l~qll~G~~~~v~v~~~~~~~~~--~~~~~~--~~~~~~~~v~~~~~~~-~~g~~ 87 (225)
T PF11209_consen 13 QIADALRAQLDLAEDPEVSIGGFPFLTQLLGGRLDSVTVDAPGVTVDG--QGLRIA--EVTVTAEDVRLDPSDL-LSGDV 87 (225)
T ss_pred HHHHHHHHhcCCCCCceEEEcCcCcHHHHhCCEeCeEEEEeCCcEEec--cCccee--EEEEEEEEEEEcchhc-ccccc
Confidence 45566777776679999999888742 222333443332111111 122222 4455555555554443 11224
Q ss_pred eCCCeEEEEEeEEEechhHHHHHHh
Q 045101 83 KGNDKTVLNVPVKVPHSVLVSLVKD 107 (153)
Q Consensus 83 pa~g~~~v~vpv~v~~~~l~~~~~~ 107 (153)
....-..++..+.+++.++.+.+..
T Consensus 88 ~~~~~~~~~~~~~l~~~~l~~~l~~ 112 (225)
T PF11209_consen 88 SLVRADSLTATVTLSEDDLNRALGS 112 (225)
T ss_pred cccceEEEEEEEEECHHHHHHHHcc
Confidence 4455778889999999999988874
No 66
>PRK06789 flagellar motor switch protein; Validated
Probab=31.67 E-value=55 Score=21.83 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.9
Q ss_pred EEEEECCEEEEEEEC
Q 045101 62 YVLKSDGRVIATGTI 76 (153)
Q Consensus 62 y~l~lng~~ia~G~~ 76 (153)
-++.+||+.+|+|+.
T Consensus 44 vdI~vNg~lia~GEv 58 (74)
T PRK06789 44 VRLMLENEEIGTGKI 58 (74)
T ss_pred EEEEECCEEEeEEeE
Confidence 468999999999984
No 67
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=30.74 E-value=2.1e+02 Score=20.75 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=36.9
Q ss_pred cCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCE
Q 045101 20 RKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGR 69 (153)
Q Consensus 20 ~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~ 69 (153)
+++++++..-+- +. .+..+.+..+|+|-..+++.-+-++-++.=+++
T Consensus 46 ~~~~~~~~~~~~--l~-~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~ 92 (149)
T PF09624_consen 46 KKIELTLTSQKR--LQ-YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQ 92 (149)
T ss_pred CCceEEEeeeee--ee-eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCC
Confidence 788888887665 33 455699999999999999998888888865443
No 68
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=30.35 E-value=75 Score=21.85 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=38.1
Q ss_pred cccceEEEEEEEEECCCCCCcccccEEEEEEECC-EEEEEEECCCCeeEeCCCeEEEEEeEEE
Q 045101 35 SREGVDYLADVSIDNPYSHSIPICEISYVLKSDG-RVIATGTIPDPGSIKGNDKTVLNVPVKV 96 (153)
Q Consensus 35 ~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng-~~ia~G~~~~~~~Ipa~g~~~v~vpv~v 96 (153)
+..+-...+.+...|- .+-+|.++.+.+.+-. ..+.-.. ....+|++.+..+-.+.+.-
T Consensus 20 ~~~~~~~~i~~~f~N~--s~~~it~f~~q~avpk~~~l~l~~-~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 20 SPNPNQGRIKLTFGNK--SSQPITNFSFQAAVPKSFKLQLQP-PSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp CCETTEEEEEEEEEE---SSS-BEEEEEEEEEBTTSEEEEEE-SS-SSB-TTTEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEC--CCCCcceEEEEEEeccccEEEEeC-CCCCeeCCCCeEEEEEEEEE
Confidence 4455678888999986 6677888888886653 3333333 35678899887777777765
No 69
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=30.29 E-value=96 Score=24.67 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=33.0
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEe
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVP 93 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vp 93 (153)
.|.|.||-++=+.+..+.. +..+|+.+.. ...-|+++++..+.++
T Consensus 156 ~l~v~N~~p~~i~l~~l~~-~~~~g~~~~~----~~~~v~P~s~~~~~l~ 200 (230)
T PRK09918 156 NLVVSNPSPYVVRLGQQVI-LLPSGKVVAL----PKPYILPGESLTVAIT 200 (230)
T ss_pred EEEEECCCCEEEEEeccEE-EccCCceecc----CCceECCCceEEEEcc
Confidence 4889999999999988533 2347775432 2257999999988876
No 70
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.98 E-value=20 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.2
Q ss_pred CchhhHHhhhhHhhhhcCccCCeE
Q 045101 1 MAQLVDKAKNYVTDKVTNMRKPEA 24 (153)
Q Consensus 1 ~~~~~~~~~~f~~~k~~~~~~P~V 24 (153)
||-|=+..|-|+-|.+|-+++|+-
T Consensus 1 MA~L~~~vK~FIVQ~LAcfdTPs~ 24 (104)
T PF10045_consen 1 MAALKKEVKAFIVQSLACFDTPSE 24 (104)
T ss_pred CCCccHHHHHHHHHHHHhhCCHHH
Confidence 888999999999999999999964
No 71
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=29.69 E-value=1.4e+02 Score=22.04 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=21.4
Q ss_pred ceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECC
Q 045101 38 GVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIP 77 (153)
Q Consensus 38 ~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~ 77 (153)
.+++.+...+-.= =.|=+|.|+.||..+.+|...
T Consensus 37 ~v~V~VtwN~WsG------~~Gd~~kly~dG~~V~tG~~~ 70 (133)
T PF08329_consen 37 QVDVSVTWNVWSG------TNGDTAKLYFDGVLVWTGPSP 70 (133)
T ss_dssp SEEEEEEEE-SSS---------SEEEEEETTEEEEEEE--
T ss_pred ceEEEEEEEEecC------CCCCEEEEEECCEEEEeCCCc
Confidence 4455666665542 247799999999999988866
No 72
>PF10816 DUF2760: Domain of unknown function (DUF2760); InterPro: IPR021212 This is a bacterial family of uncharacterised proteins.
Probab=29.52 E-value=1.1e+02 Score=22.50 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=28.9
Q ss_pred CccceEEEEEEEEccCcccceeeeeeeEeEEeCCCCcc
Q 045101 112 WDIDYLLEVGLIIDLPLIGNFTIPLSTQGEVKLPTLTD 149 (153)
Q Consensus 112 ~~i~Y~l~g~l~~~~p~~G~~~ip~~~~G~i~lp~l~~ 149 (153)
+.-.|||.|.+.-.-|+-|.+.=+=.+-.++.||++.+
T Consensus 75 da~~irLtGnV~G~pPf~G~L~H~GWra~~v~LPk~~~ 112 (125)
T PF10816_consen 75 DASAIRLTGNVVGEPPFTGTLVHRGWRATEVRLPKLAE 112 (125)
T ss_pred CccceEEEeeecccCCCceeEeeCCeEeeEEECCCcCC
Confidence 45669999999877887676444556667999999875
No 73
>PF12371 DUF3651: Protein of unknown function (DUF3651); InterPro: IPR022113 This domain family is found in eukaryotes, and is approximately 70 amino acids in length. This family is frequently annotated as a membrane protein but there is little associated literature to back this up.
Probab=28.86 E-value=33 Score=22.28 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.0
Q ss_pred ceEEEEEEEEECCCCCCccccc
Q 045101 38 GVDYLADVSIDNPYSHSIPICE 59 (153)
Q Consensus 38 ~~~~~~~l~V~NPN~~~L~i~~ 59 (153)
+.++.-.+.+.||++.++.+.+
T Consensus 51 ~~t~~~~i~~~Np~~~~l~v~e 72 (73)
T PF12371_consen 51 NTTFSPLISLFNPHSQPLQVDE 72 (73)
T ss_pred CccccccEEEECCCCcceEeee
Confidence 3467778999999999988765
No 74
>PRK10579 hypothetical protein; Provisional
Probab=27.85 E-value=1.3e+02 Score=21.02 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=32.1
Q ss_pred cccccEEEEEEECCEE-EEEEECCCCeeEeCCCeEEEEEeEEEec
Q 045101 55 IPICEISYVLKSDGRV-IATGTIPDPGSIKGNDKTVLNVPVKVPH 98 (153)
Q Consensus 55 L~i~~l~y~l~lng~~-ia~G~~~~~~~Ipa~g~~~v~vpv~v~~ 98 (153)
+.|-.=+.++.+.|.. +-.=...+.+.|||+++=.+++...++|
T Consensus 45 MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y 89 (94)
T PRK10579 45 MTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSY 89 (94)
T ss_pred EEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcceee
Confidence 3444456667777754 6666777889999999988888776665
No 75
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=26.21 E-value=1.1e+02 Score=21.41 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=27.0
Q ss_pred cccEEEEEEECCEE-EEEEECCCCeeEeCCCeEEEEEeEEEec
Q 045101 57 ICEISYVLKSDGRV-IATGTIPDPGSIKGNDKTVLNVPVKVPH 98 (153)
Q Consensus 57 i~~l~y~l~lng~~-ia~G~~~~~~~Ipa~g~~~v~vpv~v~~ 98 (153)
|-.=+.++.+.|.. +-.=...+.+.|||+++=.+++...+.|
T Consensus 47 vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y 89 (94)
T PF06865_consen 47 VVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTAY 89 (94)
T ss_dssp EEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEE
T ss_pred EEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcceee
Confidence 33445667777775 7777778889999999888887766554
No 76
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=25.20 E-value=42 Score=23.12 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=11.2
Q ss_pred cceEEEEEEEEECCCC
Q 045101 37 EGVDYLADVSIDNPYS 52 (153)
Q Consensus 37 ~~~~~~~~l~V~NPN~ 52 (153)
.|+++.-..++.|||=
T Consensus 35 ~gV~i~~v~~~~npNY 50 (88)
T PF09087_consen 35 PGVTIKKVVKTDNPNY 50 (88)
T ss_dssp TTEEEEEEEE-SSTTE
T ss_pred CCeEEEEEEecCCCCE
Confidence 5677777778888884
No 77
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=24.69 E-value=74 Score=25.91 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=30.4
Q ss_pred EEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEE
Q 045101 44 DVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVL 90 (153)
Q Consensus 44 ~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v 90 (153)
.+.|.||-|+=+.+..+ .++|+.+. .+...|+++++..+
T Consensus 184 ~l~i~NPTPYyitl~~l----~v~~~~i~----~~~~mIaPfs~~~~ 222 (246)
T PRK15233 184 SIVIKNPTSSYVNIANI----KSGNLSFN----IPNGYIEPFGYAQL 222 (246)
T ss_pred EEEEECCCCcEEEeEeE----EECCcccC----CCCceECCCCcccc
Confidence 38999999999999864 57888652 13467999998864
No 78
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=24.60 E-value=2.3e+02 Score=19.22 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=32.3
Q ss_pred EEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEE
Q 045101 24 ASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGT 75 (153)
Q Consensus 24 V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~ 75 (153)
..+.++++...-..+-++.+++++.--.. .+..++..++.+|..+++|+
T Consensus 78 ~~~~~~kf~~~v~pgd~l~i~~~i~~~~~---~~~~~~~~~~~~g~~v~~~~ 126 (131)
T cd00493 78 AGVRKVKFRGPVLPGDTLTLEVELLKVRR---GLGKFDGRAYVDGKLVAEAE 126 (131)
T ss_pred EEcceeEECCCcCCCCEEEEEEEEEEeeC---CEEEEEEEEEECCEEEEEEE
Confidence 34456666555444446666666553322 67778888889999999987
No 79
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=24.57 E-value=2.5e+02 Score=19.54 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=43.6
Q ss_pred EEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCe-----EEEEEeEEEe
Q 045101 25 SLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDK-----TVLNVPVKVP 97 (153)
Q Consensus 25 ~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~-----~~v~vpv~v~ 97 (153)
++++|++..+..+| ++....+|+ ++-.+-+-|.++.+|...-.+.-|..-+ ..+.=|+.-.
T Consensus 2 ~iTdVRirkv~~dg-rmkA~vsvT-----------~D~efVvhdirVi~G~~GlfVAMPSrrt~dgEFrDI~HPI~~~ 67 (95)
T COG2088 2 EITDVRIRKVDTDG-RMKAYVSVT-----------LDNEFVVHDIRVIEGNNGLFVAMPSRRTPDGEFRDIAHPINSD 67 (95)
T ss_pred cceeEEEEEecCCC-cEEEEEEEE-----------ecceEEEeccEEEeCCcceEEEccCccCCCcchhhccCcCCHH
Confidence 57899999999887 677666664 3335678899999999888888777544 4444555433
No 80
>PF04965 GPW_gp25: Gene 25-like lysozyme; InterPro: IPR007048 The family of sequences represented by this entry include proteins from Bacteriophage T4 and related phage, which may be structural components of the outer wedge of the baseplate that has acidic lysozyme activity [, ]. They also include anti-adapter protein IraD, from bacteria, that inhibit RpoS proteolysis by regulating RssB activity [].; PDB: 2IA7_A.
Probab=24.42 E-value=1.7e+02 Score=19.46 Aligned_cols=42 Identities=2% Similarity=0.187 Sum_probs=25.0
Q ss_pred HHhhhhHhhhhcCccCCeEEEEEEEEceec--ccceEEEEEEEEE
Q 045101 6 DKAKNYVTDKVTNMRKPEASLSKFRLKGVS--REGVDYLADVSID 48 (153)
Q Consensus 6 ~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~--l~~~~~~~~l~V~ 48 (153)
...+.-+.+.+..| .|+++..+|++..-. .....|.++..+.
T Consensus 47 ~~i~~~I~~aI~~~-EPRl~~~~V~~~~~~~~~~~l~~~I~~~l~ 90 (99)
T PF04965_consen 47 QAIRREIREAIQRF-EPRLKVVSVEVEEDDDEDGKLTFTISGTLR 90 (99)
T ss_dssp HHHHHHHHHHHHHH--TTEEEEEEEEE-TTGGGTEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHh-CCcEEEEEEEEEecCCCCCEEEEEEEEEEE
Confidence 33444455555544 899999999998755 3334555555543
No 81
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=24.10 E-value=3.9e+02 Score=21.68 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=31.3
Q ss_pred EEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEE
Q 045101 43 ADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVL 90 (153)
Q Consensus 43 ~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v 90 (153)
+..+++|+-+++|+=. .-.++.+|.-++++.++. ++++.+-.+
T Consensus 170 l~a~~~n~~~~~L~~G--~~~v~~dg~~vG~~~l~~---~~~ge~~~l 212 (317)
T PF13598_consen 170 LVARFKNTSGLPLLPG--PVSVYRDGTFVGESRLPH---TAPGEEFEL 212 (317)
T ss_pred EEEEEECCCCCcccCC--cEEEEECCEEEEeeecCC---CCCCCEEEE
Confidence 4567888888888733 778899999999988776 444444443
No 82
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=24.08 E-value=45 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCCCcccccEEEEEEECCEEEEEEEC
Q 045101 51 YSHSIPICEISYVLKSDGRVIATGTI 76 (153)
Q Consensus 51 N~~~L~i~~l~y~l~lng~~ia~G~~ 76 (153)
..-+..++|..||+-+||..++-|.+
T Consensus 504 ~s~p~~~rgqhYDlV~NGvElGGGSi 529 (628)
T KOG2411|consen 504 ESAPEKIRGQHYDLVVNGVELGGGSI 529 (628)
T ss_pred hcCchhhhcceeeeEEccEeecCcee
Confidence 34456899999999999999998873
No 83
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=23.90 E-value=80 Score=20.04 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=26.1
Q ss_pred CeEEEEEeEEEechhHHHHHHhhc--CCCccceEE
Q 045101 86 DKTVLNVPVKVPHSVLVSLVKDIA--RDWDIDYLL 118 (153)
Q Consensus 86 g~~~v~vpv~v~~~~l~~~~~~l~--~~~~i~Y~l 118 (153)
....+.||..++...|=.++..+. ..+.++|.+
T Consensus 16 ~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF 50 (65)
T PF08154_consen 16 PGTPISVPSNITRKELSELVNQLLDDEEEPVPFDF 50 (65)
T ss_pred CCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEE
Confidence 346799999999999988888876 346788876
No 84
>PF13144 SAF_2: SAF-like
Probab=23.44 E-value=3.3e+02 Score=20.55 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHhhhhHhhhhcCccCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCC
Q 045101 6 DKAKNYVTDKVTNMRKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGN 85 (153)
Q Consensus 6 ~~~~~f~~~k~~~~~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~ 85 (153)
+.+++|+.+++.+. ++++....+..-...... -.+.+..|.. .......++.+.|+ |.......+++.
T Consensus 3 ~~i~~~l~~~~~~~---~~~i~~~~~~~~~~l~~~--~~~~~~~~~~-~~~~~~~~~~v~~~------~~~~~~~~v~~~ 70 (196)
T PF13144_consen 3 QAIEQFLKQRYPNN---EIEISVINLDPRIQLPAC--GPLSISLPSG-NRPRGRGRVSVRCD------GPPNWKIYVRVR 70 (196)
T ss_pred HHHHHHHHHhcccC---ceEEEEeccCCccCCCcC--CCeEEEecCC-CcCCCcEEEEEEEc------CCCCeEEEEEEE
Confidence 46789999998654 555554444322111111 2344444442 12335566777776 222333444444
Q ss_pred CeEEEEEeEE
Q 045101 86 DKTVLNVPVK 95 (153)
Q Consensus 86 g~~~v~vpv~ 95 (153)
-+...++.+.
T Consensus 71 v~~~~~v~va 80 (196)
T PF13144_consen 71 VSAYVEVVVA 80 (196)
T ss_pred EEEEEEEEEE
Confidence 4444444443
No 85
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=23.43 E-value=1.5e+02 Score=19.23 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=22.5
Q ss_pred EEEEECCEEEEEEECCCCeeEeCCCeEE-EEEeE
Q 045101 62 YVLKSDGRVIATGTIPDPGSIKGNDKTV-LNVPV 94 (153)
Q Consensus 62 y~l~lng~~ia~G~~~~~~~Ipa~g~~~-v~vpv 94 (153)
+.+.+||.....|.....+.+.. |... +++.|
T Consensus 38 a~v~vng~~~~~~~~~~~i~L~~-G~n~~i~i~V 70 (88)
T PF12733_consen 38 ATVTVNGVPVNSGGYSATIPLNE-GENTVITITV 70 (88)
T ss_pred EEEEEcCEEccCCCcceeeEccC-CCceEEEEEE
Confidence 78999999988875555677765 4444 66666
No 86
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=22.82 E-value=40 Score=30.91 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.3
Q ss_pred CcccccEEEEEEECCEEEEEEECC
Q 045101 54 SIPICEISYVLKSDGRVIATGTIP 77 (153)
Q Consensus 54 ~L~i~~l~y~l~lng~~ia~G~~~ 77 (153)
|+.+.+-+|||.+||..++.|...
T Consensus 467 p~~~~a~~~dlv~ng~E~~~gs~r 490 (588)
T PRK00476 467 PGKARAYAYDLVLNGYELGGGSIR 490 (588)
T ss_pred HHHhhhheeeeEEeeeeeccceEE
Confidence 345888999999999999999743
No 87
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=22.68 E-value=49 Score=30.36 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.7
Q ss_pred ccccEEEEEEECCEEEEEEEC
Q 045101 56 PICEISYVLKSDGRVIATGTI 76 (153)
Q Consensus 56 ~i~~l~y~l~lng~~ia~G~~ 76 (153)
.+.+-.|||.+||..++.|.+
T Consensus 464 ~~~~~~yDLvlnG~ElggGs~ 484 (583)
T TIGR00459 464 EALAEAYDLVLNGVELGGGSI 484 (583)
T ss_pred hhhhheeeEEEeceEecceeE
Confidence 467889999999999999984
No 88
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=22.64 E-value=1.5e+02 Score=21.29 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=19.8
Q ss_pred CCCccceEEEEEEEEccC-cccceeeeeeeEe
Q 045101 110 RDWDIDYLLEVGLIIDLP-LIGNFTIPLSTQG 140 (153)
Q Consensus 110 ~~~~i~Y~l~g~l~~~~p-~~G~~~ip~~~~G 140 (153)
-++++.|+++++..+++- .+|.+.+|+..++
T Consensus 76 ~n~~v~vtvt~~~~~~~F~~~~~~~i~i~a~~ 107 (116)
T PF14208_consen 76 LNEEVTVTVTGEYKIGIFKGFGSFPITIRAKA 107 (116)
T ss_pred CCCEEEEEEEEEEEEEEECCCCCccEEEEEEe
Confidence 357889999999887632 1455555555443
No 89
>PF14321 DUF4382: Domain of unknown function (DUF4382)
Probab=22.64 E-value=3e+02 Score=19.78 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=8.0
Q ss_pred CeEEEEEEEEceec
Q 045101 22 PEASLSKFRLKGVS 35 (153)
Q Consensus 22 P~V~l~~v~~~~~~ 35 (153)
=.|.+++|++...+
T Consensus 20 v~v~i~~v~~~~~~ 33 (139)
T PF14321_consen 20 VNVTISSVELHPSD 33 (139)
T ss_pred EEEEEEEEEEEECC
Confidence 34666666665544
No 90
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=22.17 E-value=2.5e+02 Score=19.76 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=26.6
Q ss_pred CEEEEEEECCCCeeEeCCCeEEEEEeEEEechhHHHHHHhhcCC
Q 045101 68 GRVIATGTIPDPGSIKGNDKTVLNVPVKVPHSVLVSLVKDIARD 111 (153)
Q Consensus 68 g~~ia~G~~~~~~~Ipa~g~~~v~vpv~v~~~~l~~~~~~l~~~ 111 (153)
|..+.+-.......-+.+..-.+++.++-+|.++...+.++...
T Consensus 67 gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l 110 (144)
T PF04350_consen 67 GVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENL 110 (144)
T ss_dssp T-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred CCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcC
Confidence 44445544444444455556677777777799999999988543
No 91
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=21.13 E-value=2.9e+02 Score=19.09 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=28.8
Q ss_pred eecccceEEEEEEEEECCCCCCccccc----------EEEEEEECCEEEEEEECCCCe
Q 045101 33 GVSREGVDYLADVSIDNPYSHSIPICE----------ISYVLKSDGRVIATGTIPDPG 80 (153)
Q Consensus 33 ~~~l~~~~~~~~l~V~NPN~~~L~i~~----------l~y~l~lng~~ia~G~~~~~~ 80 (153)
+....+-...+++.|.-|+..++.-+. =+..++.||+++.+.....++
T Consensus 7 ~~~~~g~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~v~~ng~~v~~~~~~~si 64 (100)
T PF08770_consen 7 KAAKKGGVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVEVTYNGKPVFRADWGPSI 64 (100)
T ss_dssp SCEETTEEEEEEEEE----B-S-BB-TTS-BB--B-EEEEEEEETTEEEEEEEE-TTB
T ss_pred ccccCCCcEEEEEEEECCCccccccCCCCCCCChHheEEEEEEECCEEEEEEEeCCcc
Confidence 344556678999999999998877654 245677899999987765543
No 92
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=21.01 E-value=4.3e+02 Score=20.95 Aligned_cols=62 Identities=8% Similarity=0.126 Sum_probs=36.8
Q ss_pred hhhHHhhhhHhhhhcCccCCeEEEEEEEEce-ecc-cceEEEEEEEEECCCCCCcccccEEEEEEECCE
Q 045101 3 QLVDKAKNYVTDKVTNMRKPEASLSKFRLKG-VSR-EGVDYLADVSIDNPYSHSIPICEISYVLKSDGR 69 (153)
Q Consensus 3 ~~~~~~~~f~~~k~~~~~~P~V~l~~v~~~~-~~l-~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~ 69 (153)
+|-..|.+|+.+++......++++.-..+.. ..+ .+.+ +.+..|+. ..+...+++.+.|++.
T Consensus 32 ~l~~~~~~~l~~~~~~~~~~~~~v~~~~l~~~~~l~~C~~----~~~~~~~~-~~~~G~~~v~v~c~~~ 95 (235)
T PRK07018 32 AISEQAEQFLEQQLEAGLPGKVSVTVATLDPRLRLPACDQ----LEASLPSN-ARLWGNVTVGVRCGGP 95 (235)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCCCcccCCCCCCC----ceeecCCC-CCcccccEEEEEeCCC
Confidence 5667899999999943344455554444321 111 1112 44555543 4677778888888776
No 93
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=20.85 E-value=3.1e+02 Score=20.15 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=43.4
Q ss_pred ceEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEECCCCeeEeCCCeEEEEEeE
Q 045101 38 GVDYLADVSIDNPYS-HSIPICEISYVLKSDGRVIATGTIPDPGSIKGNDKTVLNVPV 94 (153)
Q Consensus 38 ~~~~~~~l~V~NPN~-~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~g~~~v~vpv 94 (153)
...|.+.|.|+|-.+ -+|.|..++|- .-+|+ +.+--.++++.+++.++..+-|+-
T Consensus 22 ~~~Lt~tLSiRNtd~~~~i~i~~v~Yy-dt~G~-lvr~yl~~Pi~L~Pl~t~~~vV~e 77 (125)
T PF11322_consen 22 PFNLTATLSIRNTDPTDPIYITSVDYY-DTDGK-LVRSYLDKPIYLKPLATTEFVVEE 77 (125)
T ss_pred eEeEEEEEEEEcCCCCCCEEEEEEEEE-CCCCe-EhHHhcCCCeEcCCCceEEEEEec
Confidence 356889999999876 58999999983 34554 445567999999999999998874
No 94
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=20.79 E-value=2.2e+02 Score=25.36 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=30.3
Q ss_pred EEEEE--ECCCCCCcccc----cEEEEEEECCEEE-EEEECCCCeeEeC----CCeEEEEEeEEEec
Q 045101 43 ADVSI--DNPYSHSIPIC----EISYVLKSDGRVI-ATGTIPDPGSIKG----NDKTVLNVPVKVPH 98 (153)
Q Consensus 43 ~~l~V--~NPN~~~L~i~----~l~y~l~lng~~i-a~G~~~~~~~Ipa----~g~~~v~vpv~v~~ 98 (153)
++++| ..|-+|+|.|+ .=.+++.+||+++ .....+.-.+|.. +.+-++.+|..+..
T Consensus 430 v~i~v~~~~~~~f~l~lRIP~Wa~~~~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~ 496 (520)
T PF07944_consen 430 VRITVSPDKPVPFTLRLRIPSWAKGATIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRL 496 (520)
T ss_pred EEEEEEcCCCccEEEEEEccCCCCCcEEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEE
Confidence 34444 55555655554 2248899999994 3333333345543 34445555555554
No 95
>PF00932 LTD: Lamin Tail Domain; InterPro: IPR001322 Intermediate filaments (IF) are primordial components of the cytoskeleton and the nuclear envelope []. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups, type I: acidic cytokeratins, type II: basic cytokeratins, type III: vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin, type IV: neurofilaments L, H and M, alpha-internexin and nestin, and type V: nuclear lamins A, B1, B2 and C. The lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane that may provide a framework for the nuclear envelope and may interact with chromatin. All IF proteins are structurally similar in that they consist of a central rod domain arranged in coiled-coil alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. The C-terminal domain has been charcterised for the lamins.; PDB: 3UMN_A 2KPW_A 3JT0_A 2LLL_A 1UFG_A 3GEF_D 1IFR_A 1IVT_A.
Probab=20.49 E-value=2.9e+02 Score=18.75 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=29.0
Q ss_pred cCCeEEEEEEEEceecccceEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEECCCCeeEeCC
Q 045101 20 RKPEASLSKFRLKGVSREGVDYLADVSIDNPYSHSIPICEISYVLKSDGRVIATGTIPDPGSIKGN 85 (153)
Q Consensus 20 ~~P~V~l~~v~~~~~~l~~~~~~~~l~V~NPN~~~L~i~~l~y~l~lng~~ia~G~~~~~~~Ipa~ 85 (153)
..+.+.+..+...+-.. =-+.|+|+-+-++.|.|....-. -..........+.++
T Consensus 9 ~~~~v~I~Ei~~~~~~~------e~VEl~N~~~~~vdL~gw~L~~~-----~~~~~~~~~~~l~pg 63 (116)
T PF00932_consen 9 AAGDVVINEIMPDGSDN------EWVELYNPGDSTVDLSGWKLVDS-----NNTYTFPPGTTLAPG 63 (116)
T ss_dssp ETSSEEEEEEETTS---------SEEEEEE-SSS-EEGTT-EEEEE-----EEEEE--TT-EE-TT
T ss_pred CCCcEEEEEECCCCCcE------EEEEEEECCCCcEeeccEEEEEC-----CccEEccCCcCcCCC
Confidence 45566666665544322 35788999999999999776555 333344444555443
No 96
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=20.30 E-value=1.2e+02 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.534 Sum_probs=16.9
Q ss_pred hHHhhhhHhhhhcCc-cCCeEEEE
Q 045101 5 VDKAKNYVTDKVTNM-RKPEASLS 27 (153)
Q Consensus 5 ~~~~~~f~~~k~~~~-~~P~V~l~ 27 (153)
++.|++.+.+++..+ ..|+|+++
T Consensus 56 ~~e~~~~I~~~l~~~~~~p~V~V~ 79 (82)
T PF02563_consen 56 LEEAEEEIKQRLQKYYRDPQVSVT 79 (82)
T ss_dssp HHHHHHHHHHHHTTTSSS--EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEE
Confidence 467888899888887 88988875
Done!