BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045104
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 6 VHIHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVDSAILIKKLVRSGK 59
+ +HC+ C +K L+ + G+ SL+ D E Q++ V +V + +I L GK
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGK 66
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 6 VHIHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVDSAILIKKLVRSGK 59
+ HC+ C +K L+ + G+ SL+ D E Q+ V +V + +I L GK
Sbjct: 12 IPXHCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGK 65
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 4 LKVHIHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVDSAILIKKLVRSGKYVEL 63
V + CQ C V+K L+ + GV + + E+Q+V+V + S + L +G+ L
Sbjct: 23 FAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVL 82
Query: 64 LSPSYYQILNQG 75
Q+ N G
Sbjct: 83 KGMGSGQLQNSG 94
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 8 IHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVDSAILIKKLVRSGKYVELLSPS 67
+HC+ C ++ L ++ V S+ + EN+ IV N S + + +R K +E +SP
Sbjct: 12 MHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASS--VTPESLR--KAIEAVSPG 67
Query: 68 YYQI 71
Y++
Sbjct: 68 LYRV 71
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 8 IHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVDSAILIKKLVRS 57
+ C C VKK L K+EGV + + E + +V+ + D+ ++KL ++
Sbjct: 12 MTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD-DTKASVQKLTKA 60
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 8 IHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVDSAILIKKLVRS 57
+ C C VKK + K+EGV + + E + +V+ + D+ ++KL ++
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFD-DAKTSVQKLTKA 60
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 6 VHIHCQGCQQKVKKLLRKIE-GVYSLHIDAENQVVIVSVNVDSAILIKKLVRSGKYV 61
V + C GC V K+L K+E V + I E Q+V V + +++K+ ++GK V
Sbjct: 11 VVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEV 67
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 6 VHIHCQGCQQKVKKLLRKIE-GVYSLHIDAENQVVIVSVNVDSAILIKKLVRSGKYV 61
V + C GC V K+L K+E V + I E Q+V V + +++K+ ++GK V
Sbjct: 11 VVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEV 67
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 8 IHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVD 46
+ CQ C + V+ + +++GV ++H++ E V VS + D
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDAD 49
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 8 IHCQGCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVNVD 46
+ CQ C + V+ + +++GV ++H++ E V VS + D
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDAD 49
>pdb|2PRO|A Chain A, Pro Region Of Alpha-Lytic Protease
pdb|2PRO|B Chain B, Pro Region Of Alpha-Lytic Protease
pdb|2PRO|C Chain C, Pro Region Of Alpha-Lytic Protease
pdb|3PRO|C Chain C, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|3PRO|D Chain D, Alpha-Lytic Protease Complexed With C-Terminal Truncated
Pro Region
pdb|4PRO|C Chain C, Alpha-lytic Protease Complexed With Pro Region
pdb|4PRO|D Chain D, Alpha-lytic Protease Complexed With Pro Region
Length = 166
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 12 GCQQKVKKLLRKIEGVYSLHIDAENQVVIVSVN 44
G +VK + + ++GV S ++D + V+V V+
Sbjct: 101 GANARVKGVSKPLDGVQSWYVDPRSNAVVVKVD 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,638,758
Number of Sequences: 62578
Number of extensions: 183865
Number of successful extensions: 387
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 17
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)