BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045105
         (601 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EHB|D Chain D, The Structure Of The C-Terminal Domain Of The Protein
           Kinase Atsos2 Bound To The Calcium Sensor Atsos3
          Length = 143

 Score = 34.7 bits (78), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 406 TAYAMHGHGKEGIAHFRRILAS-GFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV 464
           T +       E IA+   +  S GF+    +F + L       SIK G +   ++  Y+V
Sbjct: 36  TRFVSRREPSEIIANIEAVANSMGFKSHTRNFKTRLEGL---SSIKAG-QLAVVIEIYEV 91

Query: 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLG 508
            PSL     MVD+   AGE  E ++F KK+    ++++W A  G
Sbjct: 92  APSL----FMVDVRKAAGETLEYHKFYKKLCSKLENIIWRATEG 131


>pdb|2EAV|A Chain A, Crystal Structure Of The C-terminal Peptidoglycan-binding
           Domain Of Human Peptidoglycan Recognition Protein Ibeta
 pdb|2EAV|B Chain B, Crystal Structure Of The C-terminal Peptidoglycan-binding
           Domain Of Human Peptidoglycan Recognition Protein Ibeta
          Length = 165

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 60  VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
           V W+  + G +  GYD+ A+G+ F     G+ PNA  L +        Q L       GY
Sbjct: 80  VGWN--VQGSSTPGYDDIALGITFMGTFTGIPPNAAALEAA-------QDLIQCAMVKGY 130

Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156
           +T N      +++ G  DV R      +   I S + 
Sbjct: 131 LTPN------YLLVGHSDVARTLSPGQALYNIISTWP 161


>pdb|2EAX|A Chain A, Crystal Structure Of Human Pgrp-Ibetac In Complex With
           Glycosamyl Muramyl Pentapeptide
 pdb|2EAX|B Chain B, Crystal Structure Of Human Pgrp-Ibetac In Complex With
           Glycosamyl Muramyl Pentapeptide
 pdb|2EAX|C Chain C, Crystal Structure Of Human Pgrp-Ibetac In Complex With
           Glycosamyl Muramyl Pentapeptide
          Length = 164

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 60  VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
           V W+  + G +  GYD+ A+G+ F     G+ PNA  L +        Q L       GY
Sbjct: 79  VGWN--VQGSSTPGYDDIALGITFMGTFTGIPPNAAALEAA-------QDLIQCAMVKGY 129

Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156
           +T N      +++ G  DV R      +   I S + 
Sbjct: 130 LTPN------YLLVGHSDVARTLSPGQALYNIISTWP 160


>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
          Length = 291

 Score = 30.0 bits (66), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSF 232
           +AEA  +F    +L  QR ++++        D+  +DEA S+F ++L  D  E   F
Sbjct: 242 LAEAEIIFPNSRYLKTQRALLTY--------DSRDFDEAESLFENILTNDPAENLYF 290


>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
           Human Fibroblast Collagenase.
 pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
           Human Fibroblast Collagenase.
 pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
           Triple- Helical Collagen Peptide
 pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
           Triple- Helical Collagen Peptide
          Length = 367

 Score = 28.9 bits (63), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 254 HALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMK 303
           HAL  +LGL   T +G  +   Y    D+   Q+A D+I+ I+ + G+ +
Sbjct: 119 HALGHSLGLSHSTDIGALMYPSYTFSGDV---QLAQDDIDGIQAIYGRSQ 165


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,148,964
Number of Sequences: 62578
Number of extensions: 752729
Number of successful extensions: 1717
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 6
length of query: 601
length of database: 14,973,337
effective HSP length: 104
effective length of query: 497
effective length of database: 8,465,225
effective search space: 4207216825
effective search space used: 4207216825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)