BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045105
(601 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/640 (32%), Positives = 339/640 (52%), Gaps = 82/640 (12%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KCGSL+D ++VF MP+R+ +WNSVVT G + EA M D T
Sbjct: 65 YSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT----- 119
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W++++ GF Q+ EEA+ M EG N + +SVL AC+ L ++ G + H I
Sbjct: 120 WNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIA 179
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
++ F+S+ ++ + LVD+Y +CG++ A ++F + +N VS N++I + +NG EA +
Sbjct: 180 KSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD 239
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
+F M + +EP T SV+ AC
Sbjct: 240 VFQMM------------------------------------LESRVEPDEVTLASVISAC 263
Query: 242 ADMNSLRKGKEIHALAIAL-GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
A +++++ G+E+H + L++D + A V+MY + + A+ FD + I N++
Sbjct: 264 ASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMP-IRNVIA 322
Query: 301 K------------------MKEDGFEPNVYTWN--------------AMQLFSEMLSLDL 328
+ M E NV +WN A+ LF + +
Sbjct: 323 ETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382
Query: 329 TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY------DSDVHIGTALVDMYAKCGS 382
P Y+ IL AC+ LA + G Q H + ++ G+ + D+ +G +L+DMY KCG
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
++ L ++++ D VS NAM+ +A +G+G E + FR +L SG +PDHI+ + LSA
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 502
Query: 443 CVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV 501
C HAG ++ G +F M + V P HYTCMVDLL RAG L EA I+++PM PDSV
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 562
Query: 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561
+WG+LL C H N+ G+ A++L+E+EP+N+G YV+L+N++A G+W D+ R+ M+
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMR 622
Query: 562 DRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
+ K PGCSWI+ + H F D+SH R ++I++++D
Sbjct: 623 KEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLD 662
Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 207/421 (49%), Gaps = 52/421 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG+++DA++VF M +R+ VSWNS++T NG +EAL+
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALD---------------- 239
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNARTLSSVLPACARLQKLSLGKEFHGY 119
+F+M E +EP+ TL+SV+ ACA L + +G+E HG
Sbjct: 240 ---------------------VFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGR 278
Query: 120 ITRNGFMSNPFVV-NGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAE 178
+ +N + N ++ N VD+Y +C + A IF I+N ++ ++I GY +
Sbjct: 279 VVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKA 338
Query: 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVL 238
AR +F +M +R ++SWN++I+GY N +EA S+F LL R+ + PT ++F ++L
Sbjct: 339 ARLMFTKM----AERNVVSWNALIAGYTQNGENEEALSLFC-LLKRESVCPTHYSFANIL 393
Query: 239 IACADMNSLRKGKEIHALAIALGL------QSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292
ACAD+ L G + H + G + D FVG +L++MY + + + F ++
Sbjct: 394 KACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM 453
Query: 293 ENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGK 352
+ + GF N Y A++LF EML PD T+ +LSAC +E G+
Sbjct: 454 MERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGR 513
Query: 353 QVHAYAIR-CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVSQNAMLTAYAM 410
+ R G T +VD+ + G L+ A+ + + PD V ++L A +
Sbjct: 514 HYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKV 573
Query: 411 H 411
H
Sbjct: 574 H 574
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/504 (26%), Positives = 235/504 (46%), Gaps = 67/504 (13%)
Query: 92 PNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKI 151
P A+ L S + + +L + + + H + ++GF + F+ N L+D Y +CG + ++
Sbjct: 21 PFAKLLDSCIKS--KLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77
Query: 152 FSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLY 211
F K +N + N+++ G + G + EA LF M +R +WNSM+SG+ +
Sbjct: 78 FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMP----ERDQCTWNSMVSGFAQHDRC 133
Query: 212 DEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGA 271
+EA F ++ ++G ++F SVL AC+ +N + KG ++H+L SD ++G A
Sbjct: 134 EEALCYFA-MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSA 192
Query: 272 LVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPD 331
LV+MY + ++ AQ FDE+ + + FE N A+ +F ML + PD
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252
Query: 332 IYTVGIILSACSSLATMERGKQVHAYAIRC-GYDSDVHIGTALVDMYAKC---------- 380
T+ ++SAC+SL+ ++ G++VH ++ +D+ + A VDMYAKC
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 381 ---------------------GSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA 419
S K ARL + +++ ++VS NA++ Y +G +E ++
Sbjct: 313 DSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALS 372
Query: 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKH--------- 470
F + P H SF + L AC + G + A+ V LKH
Sbjct: 373 LFCLLKRESVCPTHYSFANILKACADLAELHLG-----MQAHVHV---LKHGFKFQSGEE 424
Query: 471 -----YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADR 525
++D+ + G + E Y +K+ M D V W A++ G +G +G A +
Sbjct: 425 DDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNG---YGNEALEL 480
Query: 526 LIE-LEPNNTGNYVMLANLFAYAG 548
E LE +++ + + + G
Sbjct: 481 FREMLESGEKPDHITMIGVLSACG 504
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 45/292 (15%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC + +A+ +F MP R+ ++ S+++ A A +M+ N+V
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAE-----RNVV 352
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+A+I G+TQNG +EEA+ + ++ E + P + +++L ACA L +L LG + H ++
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHV 412
Query: 121 TRNGFM------SNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG 174
++GF + FV N L+D+Y +CG + +F K ++ VS N +I+G+ +NG
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472
Query: 175 NVAEARELFDQMEHLG--------------------VQRGIISWNSMISGYVDNSLYDEA 214
EA ELF +M G V+ G ++SM + L D
Sbjct: 473 YGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDH- 531
Query: 215 FSMFRDLLMRDG-------------IEPTSFTFGSVLIACADMNSLRKGKEI 253
++ DLL R G ++P S +GS+L AC ++ GK +
Sbjct: 532 YTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYV 583
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/632 (34%), Positives = 338/632 (53%), Gaps = 44/632 (6%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y K G A+K+F MP R SWN+V++A + G + E +++ D+ V
Sbjct: 58 VYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDS-----V 112
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+ +I G+ G +AI ++ M EG+EP TL++VL + A + + GK+ H +I
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G N V N L+++Y +CGD + A +F + +++ S N +I + + G + A
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
F+QM +R I++WNSMISG+ A +F +L + P FT SVL A
Sbjct: 233 AQFEQM----AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSA 288
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR---------------------- 278
CA++ L GK+IH+ + G V AL+ MY R
Sbjct: 289 CANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348
Query: 279 -YQDLVAAQMAFDEIENIENLLGKMKED----------GFEPNVYTWNAMQLFSEMLSLD 327
+ L+ + ++ +N+ +K+ G+E + A+ LF M+
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408
Query: 328 LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR 387
P+ YT+ +LS SSLA++ GKQ+H A++ G V + AL+ MYAK G++ A
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSAS 468
Query: 388 LAYKRISTP-DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446
A+ I D VS +M+ A A HGH +E + F +L G RPDHI+++ SAC HA
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528
Query: 447 GSIKTGSEFFDLMAYYD-VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA 505
G + G ++FD+M D + P+L HY CMVDL RAG L EA EFI+K+P+ PD V WG+
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588
Query: 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565
LL C H N++ G++AA+RL+ LEP N+G Y LANL++ G+W + A+ R+ MKD R+
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648
Query: 566 HKSPGCSWIEDRDEIHKFRASDRSHDRSEEIY 597
K G SWIE + ++H F D +H EIY
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIY 680
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 136/512 (26%), Positives = 238/512 (46%), Gaps = 104/512 (20%)
Query: 92 PNARTLSSVLPACARLQKLSLGKE--------FHGYITRNGFMSNPFVVNGLVDVYRRCG 143
P +LS++L C L + S+ K H + ++G M + +++N L++VY + G
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 144 DMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS 203
L A K+F + ++ S NT++ Y + G++ E FDQ+ QR +SW +MI
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP----QRDSVSWTTMIV 119
Query: 204 GYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQ 263
GY + Y +A + D++ ++GIEPT FT +VL + A + GK++H+ + LGL+
Sbjct: 120 GYKNIGQYHKAIRVMGDMV-KEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178
Query: 264 SDTFVGGALVEMYCRYQDLVAAQMAFDE--IENIENL---------LGKMK------EDG 306
+ V +L+ MY + D + A+ FD + +I + +G+M E
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238
Query: 307 FEPNVYTWNAM--------------QLFSEML--SLDLTPDIYTVGIILSACSSLATMER 350
E ++ TWN+M +FS+ML SL L+PD +T+ +LSAC++L +
Sbjct: 239 AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL-LSPDRFTLASVLSACANLEKLCI 297
Query: 351 GKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDL------------ 398
GKQ+H++ + G+D + AL+ MY++CG ++ AR ++ T DL
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 399 ---------------------VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFL 437
V+ AM+ Y HG E I FR ++ G RP+ + L
Sbjct: 358 IKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYT-L 416
Query: 438 SALSAC------------VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELG 485
+A+ + +H ++K+G Y V S ++ + ++AG +
Sbjct: 417 AAMLSVASSLASLSHGKQIHGSAVKSGE-------IYSVSVS----NALITMYAKAGNIT 465
Query: 486 EAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
A I D+V W +++ HG+ E
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/614 (35%), Positives = 328/614 (53%), Gaps = 51/614 (8%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY +C SL DA+KVF M D +V
Sbjct: 171 MYSRCRSLSDARKVFDEMSVWD------------------------------------VV 194
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
SW+++I + + G + A+ M RM E G P+ TL +VLP CA L SLGK+ H +
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+ + N FV N LVD+Y +CG M A +FS S+K+ VS N ++ GY + G +A
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 314
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
LF++M+ ++ +++W++ ISGY L EA + R +L GI+P T SVL
Sbjct: 315 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQML-SSGIKPNEVTLISVLS 373
Query: 240 ACADMNSLRKGKEIHALAIAL-------GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292
CA + +L GKEIH AI G + V L++MY + + + A+ FD +
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSL 433
Query: 293 ENIEN--LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLT--PDIYTVGIILSACSSLATM 348
E + + G+ + A++L SEM D P+ +T+ L AC+SLA +
Sbjct: 434 SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493
Query: 349 ERGKQVHAYAIRCGYDS-DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTA 407
GKQ+HAYA+R ++ + + L+DMYAKCGS+ ARL + + + V+ +++T
Sbjct: 494 RIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTG 553
Query: 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKP 466
Y MHG+G+E + F + GF+ D ++ L L AC H+G I G E+F+ M + V P
Sbjct: 554 YGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSP 613
Query: 467 SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRL 526
+HY C+VDLL RAG L A I+++PM P V+W A L C HG +E G+ AA+++
Sbjct: 614 GPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKI 673
Query: 527 IELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586
EL N+ G+Y +L+NL+A AGRW D+ R R M+ + + K PGCSW+E F
Sbjct: 674 TELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVG 733
Query: 587 DRSHDRSEEIYTII 600
D++H ++EIY ++
Sbjct: 734 DKTHPHAKEIYQVL 747
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/562 (23%), Positives = 234/562 (41%), Gaps = 91/562 (16%)
Query: 4 KCGSLDDAKKVFKMMPERDCVSWN---SVVTACAANGLVLEALECLERMSSLDNETPNLV 60
KC ++ K + + + ++ N +++ + G + A+ L R D +
Sbjct: 37 KCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSD---AGVY 93
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
W+++I + NG + + + M + P+ T V AC + + G+ H
Sbjct: 94 HWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALS 153
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
GF+SN FV N LV +Y RC + A K+F + S+ + VS N+II Y + G A
Sbjct: 154 LVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVAL 213
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
E+F +M + G P + T +VL
Sbjct: 214 EMFSRMTN-----------------------------------EFGCRPDNITLVNVLPP 238
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR---------------------Y 279
CA + + GK++H A+ + + FVG LV+MY + +
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 280 QDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN--------------AMQLFSEMLS 325
+VA E+ L KM+E+ + +V TW+ A+ + +MLS
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC-------GYDSDVHIGTALVDMYA 378
+ P+ T+ +LS C+S+ + GK++H YAI+ G+ + + L+DMYA
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418
Query: 379 KCGSLKHARLAYKRISTP--DLVSQNAMLTAYAMHGHGKEGIAHFRRILASG--FRPDHI 434
KC + AR + +S D+V+ M+ Y+ HG + + + RP+
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAF 478
Query: 435 SFLSALSACVHAGSIKTGSEF--FDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIK 492
+ AL AC +++ G + + L + P L C++D+ ++ G + +A
Sbjct: 479 TISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGSISDARLVFD 537
Query: 493 KIPMAPDSVMWGALLGGCVSHG 514
+ MA + V W +L+ G HG
Sbjct: 538 NM-MAKNEVTWTSLMTGYGMHG 558
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 172/371 (46%), Gaps = 55/371 (14%)
Query: 194 GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEI 253
G+ WNS+I Y DN ++ +F L+ P ++TF V AC +++S+R G+
Sbjct: 91 GVYHWNSLIRSYGDNGCANKCLYLF-GLMHSLSWTPDNYTFPFVFKACGEISSVRCGESA 149
Query: 254 HALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIE-----NIENLLGKMKEDGFE 308
HAL++ G S+ FVG ALV MY R + L A+ FDE+ + +++ + G +
Sbjct: 150 HALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLG-K 208
Query: 309 PNVYTWNAMQLFSEMLS-LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDV 367
P V A+++FS M + PD T+ +L C+SL T GKQ+H +A+ ++
Sbjct: 209 PKV----ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNM 264
Query: 368 HIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAM----------------------- 404
+G LVDMYAKCG + A + +S D+VS NAM
Sbjct: 265 FVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEE 324
Query: 405 ------------LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452
++ YA G G E + R++L+SG +P+ ++ +S LS C G++ G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Query: 453 SEFFDLMAYYDVKPSLKHY-------TCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWG 504
E Y + + ++D+ ++ ++ A + P D V W
Sbjct: 385 KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444
Query: 505 ALLGGCVSHGN 515
++GG HG+
Sbjct: 445 VMIGGYSQHGD 455
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 19/229 (8%)
Query: 307 FEPN---VYTWNAM--------------QLFSEMLSLDLTPDIYTVGIILSACSSLATME 349
F P+ VY WN++ LF M SL TPD YT + AC ++++
Sbjct: 85 FPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVR 144
Query: 350 RGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYA 409
G+ HA ++ G+ S+V +G ALV MY++C SL AR + +S D+VS N+++ +YA
Sbjct: 145 CGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYA 204
Query: 410 MHGHGKEGIAHFRRILAS-GFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSL 468
G K + F R+ G RPD+I+ ++ L C G+ G + ++ ++
Sbjct: 205 KLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNM 264
Query: 469 KHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
C+VD+ ++ G + EA + + D V W A++ G G E
Sbjct: 265 FVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVAGYSQIGRFE 312
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/602 (33%), Positives = 325/602 (53%), Gaps = 73/602 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC +++A+KVF MPERD LV
Sbjct: 179 MYAKCRQVNEARKVFDRMPERD------------------------------------LV 202
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+ ++ G++QNG A+ M+ M E L+P+ T+ SVLPA + L+ +S+GKE HGY
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R+GF S + LVD+Y +CG + +A R
Sbjct: 263 MRSGFDSLVNISTALVDMYAKCGSLETA-------------------------------R 291
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+LFD M ++R ++SWNSMI YV N EA +F+ +L +G++PT + L A
Sbjct: 292 QLFDGM----LERNVVSWNSMIDAYVQNENPKEAMLIFQKML-DEGVKPTDVSVMGALHA 346
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CAD+ L +G+ IH L++ LGL + V +L+ MYC+ +++ A F ++++ +
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360
GF N +A+ FS+M S + PD +T +++A + L+ K +H +R
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466
Query: 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH 420
D +V + TALVDMYAKCG++ ARL + +S + + NAM+ Y HG GK +
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526
Query: 421 FRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YYDVKPSLKHYTCMVDLLS 479
F + +P+ ++FLS +SAC H+G ++ G + F +M Y ++ S+ HY MVDLL
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLG 586
Query: 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM 539
RAG L EA++FI ++P+ P ++GA+LG C H N+ F + AA+RL EL P++ G +V+
Sbjct: 587 RAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVL 646
Query: 540 LANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTI 599
LAN++ A W + + R M + + K+PGCS +E ++E+H F + +H S++IY
Sbjct: 647 LANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAF 706
Query: 600 ID 601
++
Sbjct: 707 LE 708
Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 174/346 (50%), Gaps = 8/346 (2%)
Query: 170 YCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR-DGIE 228
+C G+V EA +F+ ++ + + +++M+ G+ S D+A F + MR D +E
Sbjct: 79 FCRYGSVDEAARVFEPID----SKLNVLYHTMLKGFAKVSDLDKALQFF--VRMRYDDVE 132
Query: 229 PTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMA 288
P + F +L C D LR GKEIH L + G D F L MY + + + A+
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 289 FDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATM 348
FD + + + G+ N A+++ M +L P T+ +L A S+L +
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAY 408
GK++H YA+R G+DS V+I TALVDMYAKCGSL+ AR + + ++VS N+M+ AY
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSL 468
+ + KE + F+++L G +P +S + AL AC G ++ G L + ++
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372
Query: 469 KHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514
++ + + E+ A K+ + V W A++ G +G
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKL-QSRTLVSWNAMILGFAQNG 417
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 1/284 (0%)
Query: 245 NSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKE 304
+SL++ ++I L GL + F LV ++CRY + A F+ I++ N+L
Sbjct: 48 SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107
Query: 305 DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYD 364
GF A+Q F M D+ P +Y +L C A + GK++H ++ G+
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFS 167
Query: 365 SDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424
D+ T L +MYAKC + AR + R+ DLVS N ++ Y+ +G + + + +
Sbjct: 168 LDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSM 227
Query: 425 LASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484
+P I+ +S L A I G E + T +VD+ ++ G L
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSL 287
Query: 485 GEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIE 528
A + + + + V W +++ V + N + + ++++
Sbjct: 288 ETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLD 330
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/581 (33%), Positives = 315/581 (54%), Gaps = 37/581 (6%)
Query: 57 PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF 116
P + S+S++I T+ ++IG+ RM + GL P++ L ++ CA L +GK+
Sbjct: 79 PTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQI 138
Query: 117 HGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNV 176
H +G + FV + +Y RCG M A K+F + S K+ V+C+ ++ Y G +
Sbjct: 139 HCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL 198
Query: 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236
E + +ME G++ I+SWN ++SG+ + + EA MF+ + G P T S
Sbjct: 199 EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI-HHLGFCPDQVTVSS 257
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
VL + D L G+ IH I GL D V A+++MY + + F++ E +E
Sbjct: 258 VLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMME 317
Query: 297 ---------------------NLLGKMKEDGFEPNVYTWN--------------AMQLFS 321
+ KE E NV +W A++LF
Sbjct: 318 AGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFR 377
Query: 322 EMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG 381
EM + P+ T+ +L AC ++A + G+ H +A+R +VH+G+AL+DMYAKCG
Sbjct: 378 EMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCG 437
Query: 382 SLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALS 441
+ +++ + + T +LV N+++ ++MHG KE ++ F ++ + +PD ISF S LS
Sbjct: 438 RINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497
Query: 442 ACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS 500
AC G G ++F +M+ Y +KP L+HY+CMV+LL RAG+L EAY+ IK++P PDS
Sbjct: 498 ACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDS 557
Query: 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560
+WGALL C N++ +IAA++L LEP N G YV+L+N++A G W+++ R KM
Sbjct: 558 CVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKM 617
Query: 561 KDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
+ + K+PGCSWI+ ++ ++ A D+SH + ++I +D
Sbjct: 618 ESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMD 658
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 212/409 (51%), Gaps = 4/409 (0%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY +CG + DA+KVF M ++D V+ ++++ A A G + E + L M S E N+V
Sbjct: 160 MYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA-NIV 218
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+ ++ GF ++GY +EA+ M ++ G P+ T+SSVLP+ + L++G+ HGY+
Sbjct: 219 SWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYV 278
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G + + V++ ++D+Y + G + + +F++F + CN I G NG V +A
Sbjct: 279 IKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKAL 338
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
E+F+ + ++ ++SW S+I+G N EA +FR++ + G++P T S+L A
Sbjct: 339 EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVA-GVKPNHVTIPSMLPA 397
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
C ++ +L G+ H A+ + L + VG AL++MY + + +Q+ F+ + +
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERG-KQVHAYAI 359
+GF + M +F ++ L PD + +LSAC + + G K +
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517
Query: 360 RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVSQNAMLTA 407
G + + +V++ + G L+ A K + PD A+L +
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNS 566
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 135/340 (39%), Gaps = 79/340 (23%)
Query: 249 KGKEIHALAIALGLQSDTFVGGALVEMYCRYQ-----DLVAAQMAFDEIENIENLLGKMK 303
K + HA + G Q+D ++ L+ Y Y DLV + I + +L+ +
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92
Query: 304 EDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY 363
+ ++T ++ +FS M S L PD + + + C+ L+ + GKQ+H + G
Sbjct: 93 ----KAKLFT-QSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGL 147
Query: 364 DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH------------ 411
D D + ++ MY +CG + AR + R+S D+V+ +A+L AYA
Sbjct: 148 DMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSE 207
Query: 412 -----------------------GHGKEGIAHFRRILASGFRPDHISFLSALSAC----- 443
G+ KE + F++I GF PD ++ S L +
Sbjct: 208 MESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEM 267
Query: 444 ------VHAGSIKTG--------SEFFDLMA----YYDVKPSLKHYTCM--------VDL 477
+H IK G S D+ Y + + M +
Sbjct: 268 LNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITG 327
Query: 478 LSRAGELGEA---YEFIKKIPMAPDSVMWGALLGGCVSHG 514
LSR G + +A +E K+ M + V W +++ GC +G
Sbjct: 328 LSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNG 367
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 1/168 (0%)
Query: 350 RGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYA 409
+ Q HA ++ G +D +I L+ Y+ A L + I P + S ++++ A
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92
Query: 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK 469
+ I F R+ + G PD + C + K G + + +
Sbjct: 93 KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152
Query: 470 HYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
M + R G +G+A + ++ D V ALL G LE
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMS-DKDVVTCSALLCAYARKGCLE 199
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/579 (34%), Positives = 318/579 (54%), Gaps = 44/579 (7%)
Query: 20 ERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAI 79
ER+ V NS+V N V A + + M+ D ++SW+++I G+ NG E+ +
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERD-----VISWNSIINGYVSNGLAEKGL 281
Query: 80 GMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVY 139
+ +M G+E + T+ SV CA + +SLG+ H + F N L+D+Y
Sbjct: 282 SVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMY 341
Query: 140 RRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWN 199
+C G++ A+ +F +M R ++S+
Sbjct: 342 SKC-------------------------------GDLDSAKAVFREMS----DRSVVSYT 366
Query: 200 SMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIA 259
SMI+GY L EA +F ++ +GI P +T +VL CA L +GK +H
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEM-EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE 425
Query: 260 LGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQL 319
L D FV AL++MY + + A++ F E+ + + G+ N Y A+ L
Sbjct: 426 NDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSL 485
Query: 320 FSEMLSLD-LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYA 378
F+ +L +PD TV +L AC+SL+ ++G+++H Y +R GY SD H+ +LVDMYA
Sbjct: 486 FNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYA 545
Query: 379 KCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLS 438
KCG+L A + + I++ DLVS M+ Y MHG GKE IA F ++ +G D ISF+S
Sbjct: 546 KCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVS 605
Query: 439 ALSACVHAGSIKTGSEFFDLMAYY-DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497
L AC H+G + G FF++M + ++P+++HY C+VD+L+R G+L +AY FI+ +P+
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665
Query: 498 PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557
PD+ +WGALL GC H +++ + A+++ ELEP NTG YV++AN++A A +W + R R
Sbjct: 666 PDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLR 725
Query: 558 QKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
+++ R + K+PGCSWIE + ++ F A D S+ +E I
Sbjct: 726 KRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENI 764
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/545 (23%), Positives = 230/545 (42%), Gaps = 75/545 (13%)
Query: 44 ECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103
+C++ +++ D + + + F ++G E A+ +L ++P RTL SVL
Sbjct: 49 DCVDSITTFDRSVTDA---NTQLRRFCESGNLENAVKLLCVSGKWDIDP--RTLCSVLQL 103
Query: 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSC 163
CA + L GKE +I NGF+ + + + L +Y CGD+ A ++F + I+ +
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFW 163
Query: 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISW------------------------- 198
N ++ ++G+ + + LF +M GV+ ++
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILK 223
Query: 199 ----------NSMISGYVDNSLYDEAFSMFRDLLMRD----------------------- 225
NS+++ Y+ N D A +F ++ RD
Sbjct: 224 SGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283
Query: 226 -------GIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR 278
GIE T SV CAD + G+ +H++ + + L++MY +
Sbjct: 284 FVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSK 343
Query: 279 YQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGII 338
DL +A+ F E+ + + G+ A++LF EM ++PD+YTV +
Sbjct: 344 CGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403
Query: 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDL 398
L+ C+ ++ GK+VH + D+ + AL+DMYAKCGS++ A L + + D+
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463
Query: 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALSACVHAGSIKTGSEFFD 457
+S N ++ Y+ + + E ++ F +L F PD + L AC + G E
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 523
Query: 458 LMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
+ +VD+ ++ G L A+ I + D V W ++ G HG
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMHG--- 579
Query: 518 FGQIA 522
FG+ A
Sbjct: 580 FGKEA 584
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 202/629 (32%), Positives = 328/629 (52%), Gaps = 71/629 (11%)
Query: 4 KCGSLDDAKKVFKMMP----ERDCVSWNSVVTACAANGLVLEALE--------------- 44
+CG + A ++FK M E D + S+V AC+A+G + +
Sbjct: 366 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK 425
Query: 45 -----------CLERMSSLD----NETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG 89
C + ++LD E N+V W+ ++ + + + +MQ E
Sbjct: 426 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEE 485
Query: 90 LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSAL 149
+ PN T S+L C RL L LG++ H I + F N +V + L+D+Y + G + +A
Sbjct: 486 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAW 545
Query: 150 KIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS 209
I +F+ K+ ++SW +MI+GY +
Sbjct: 546 DILIRFAGKD-----------------------------------VVSWTTMIAGYTQYN 570
Query: 210 LYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVG 269
D+A + FR +L R GI + + ACA + +L++G++IHA A G SD
Sbjct: 571 FDDKALTTFRQMLDR-GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 629
Query: 270 GALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLT 329
ALV +Y R + + +AF++ E +N+ GF+ + A+++F M +
Sbjct: 630 NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID 689
Query: 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLA 389
+ +T G + A S A M++GKQVHA + GYDS+ + AL+ MYAKCGS+ A
Sbjct: 690 NNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 749
Query: 390 YKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449
+ +ST + VS NA++ AY+ HG G E + F +++ S RP+H++ + LSAC H G +
Sbjct: 750 FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 809
Query: 450 KTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLG 508
G +F+ M + Y + P +HY C+VD+L+RAG L A EFI+++P+ PD+++W LL
Sbjct: 810 DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869
Query: 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKS 568
CV H N+E G+ AA L+ELEP ++ YV+L+NL+A + +W TRQKMK++ + K
Sbjct: 870 ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 929
Query: 569 PGCSWIEDRDEIHKFRASDRSHDRSEEIY 597
PG SWIE ++ IH F D++H ++EI+
Sbjct: 930 PGQSWIEVKNSIHSFYVGDQNHPLADEIH 958
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/519 (27%), Positives = 239/519 (46%), Gaps = 77/519 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y + G +D A++VF + +D SW
Sbjct: 231 LYSRNGFVDLARRVFDGLRLKDHSSW---------------------------------- 256
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
A+I G ++N + EAI + M G+ P SSVL AC +++ L +G++ HG +
Sbjct: 257 --VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV 314
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ GF S+ +V N LV +Y G+++SA IFS S ++ V+ NT+I G + G +A
Sbjct: 315 LKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 374
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
ELF +M HL DG+EP S T S+++A
Sbjct: 375 ELFKRM-HL-----------------------------------DGLEPDSNTLASLVVA 398
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAF--DEIENIENL 298
C+ +L +G+++HA LG S+ + GAL+ +Y + D+ A F E+EN+
Sbjct: 399 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 458
Query: 299 LGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYA 358
+ G ++ N+ ++F +M ++ P+ YT IL C L +E G+Q+H+
Sbjct: 459 NVMLVAYGLLDDLR--NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 516
Query: 359 IRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGI 418
I+ + + ++ + L+DMYAK G L A R + D+VS M+ Y + + +
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576
Query: 419 AHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478
FR++L G R D + +A+SAC ++K G + L +V L
Sbjct: 577 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 636
Query: 479 SRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
SR G++ E+Y ++ A D++ W AL+ G GN E
Sbjct: 637 SRCGKIEESYLAFEQTE-AGDNIAWNALVSGFQQSGNNE 674
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 138/507 (27%), Positives = 220/507 (43%), Gaps = 78/507 (15%)
Query: 6 GSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAV 65
G L A KVF MPER +WN ++ A+ L+
Sbjct: 134 GDLYGAFKVFDEMPERTIFTWNKMIKELASRNLI-------------------------- 167
Query: 66 IGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC-ARLQKLSLGKEFHGYITRNG 124
E G+ RM +E + PN T S VL AC + ++ H I G
Sbjct: 168 ----------GEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQG 217
Query: 125 FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFD 184
+ V N L+D+Y R NG V AR +FD
Sbjct: 218 LRDSTVVCNPLIDLYSR-------------------------------NGFVDLARRVFD 246
Query: 185 QMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADM 244
+ + SW +MISG N EA +F D+ + GI PT + F SVL AC +
Sbjct: 247 GLR----LKDHSSWVAMISGLSKNECEAEAIRLFCDMYVL-GIMPTPYAFSSVLSACKKI 301
Query: 245 NSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKE 304
SL G+++H L + LG SDT+V ALV +Y +L++A+ F + + +
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361
Query: 305 DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYD 364
+G Y AM+LF M L PD T+ ++ ACS+ T+ RG+Q+HAY + G+
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 421
Query: 365 SDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424
S+ I AL+++YAKC ++ A + ++V N ML AY + + FR++
Sbjct: 422 SNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 481
Query: 425 LASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC--MVDLLSRAG 482
P+ ++ S L C+ G ++ G + + + + L Y C ++D+ ++ G
Sbjct: 482 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQ--LNAYVCSVLIDMYAKLG 539
Query: 483 ELGEAYEFIKKIPMAPDSVMWGALLGG 509
+L A++ + + D V W ++ G
Sbjct: 540 KLDTAWDILIRFA-GKDVVSWTTMIAG 565
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 36/252 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y +CG ++++ F+ D ++WN++V+ +G EAL RM+
Sbjct: 635 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR--------- 685
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
EG++ N T S + A + + GK+ H I
Sbjct: 686 ---------------------------EGIDNNNFTFGSAVKAASETANMKQGKQVHAVI 718
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
T+ G+ S V N L+ +Y +CG + A K F + S KNEVS N II Y ++G +EA
Sbjct: 719 TKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEAL 778
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+ FDQM H V+ ++ ++S L D+ + F + G+ P + V+
Sbjct: 779 DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDM 838
Query: 241 CADMNSLRKGKE 252
L + KE
Sbjct: 839 LTRAGLLSRAKE 850
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 150/370 (40%), Gaps = 68/370 (18%)
Query: 202 ISGYVDNSLYDEAFSMFR-DLLMRDGIEPTSFTFGSVLIACADMN-SLRKGKEIHALAIA 259
IS Y+ DE+F R D + GI P T +L C N SL +G+++H+ +
Sbjct: 57 ISVYISE---DESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK 113
Query: 260 LGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAM-- 317
LGL S+ + L + Y DL A FDE+ E ++TWN M
Sbjct: 114 LGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMP--------------ERTIFTWNKMIK 159
Query: 318 ------------QLFSEMLSLDLTPDIYTVGIILSAC-SSLATMERGKQVHAYAIRCGYD 364
LF M+S ++TP+ T +L AC + +Q+HA + G
Sbjct: 160 ELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLR 219
Query: 365 SDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424
+ L+D+Y++ G + AR + + D S AM++ + + E I F +
Sbjct: 220 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 279
Query: 425 LASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-----------------AYYDVKP- 466
G P +F S LSAC S++ G + L+ Y+ +
Sbjct: 280 YVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNL 339
Query: 467 -SLKH------------YTCMVDLLSRAGELGEAYEFIKKIP---MAPDSVMWGALLGGC 510
S +H Y +++ LS+ G +A E K++ + PDS +L+ C
Sbjct: 340 ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 399
Query: 511 VSHGNLEFGQ 520
+ G L GQ
Sbjct: 400 SADGTLFRGQ 409
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCGS+ DA+K F + ++ VSWN+++ A + +G EAL+ ++M N PN V
Sbjct: 736 MYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIH-SNVRPNHV 794
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACARLQKLSLGKEF 116
+ V+ + G ++ I M +E GL P V+ R LS KEF
Sbjct: 795 TLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEF 851
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/546 (33%), Positives = 301/546 (55%), Gaps = 38/546 (6%)
Query: 53 DNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSL 112
D P + W+A+I G+++N + ++A+ M MQ + P++ T +L AC+ L L +
Sbjct: 78 DLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQM 137
Query: 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTIIVGY 170
G+ H + R GF ++ FV NGL+ +Y +C + SA +F + + VS I+ Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197
Query: 171 CENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT 230
+NG EA E+F QM + V+ P
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVK------------------------------------PD 221
Query: 231 SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290
SVL A + L++G+ IHA + +GL+ + + +L MY + + A++ FD
Sbjct: 222 WVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFD 281
Query: 291 EIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMER 350
++++ +L G+ N Y A+ +F EM++ D+ PD ++ +SAC+ + ++E+
Sbjct: 282 KMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQ 341
Query: 351 GKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAM 410
+ ++ Y R Y DV I +AL+DM+AKCGS++ ARL + R D+V +AM+ Y +
Sbjct: 342 ARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGL 401
Query: 411 HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKH 470
HG +E I+ +R + G P+ ++FL L AC H+G ++ G FF+ MA + + P +H
Sbjct: 402 HGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQH 461
Query: 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530
Y C++DLL RAG L +AYE IK +P+ P +WGALL C H ++E G+ AA +L ++
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 531 PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSH 590
P+NTG+YV L+NL+A A W +A R +MK++ ++K GCSW+E R + FR D+SH
Sbjct: 522 PSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSH 581
Query: 591 DRSEEI 596
R EEI
Sbjct: 582 PRYEEI 587
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 149/307 (48%), Gaps = 29/307 (9%)
Query: 221 LLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQ 280
L GI SF + S++ + L K+IHA + LGLQ F+ L+ +
Sbjct: 12 LYTNSGIHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFG 67
Query: 281 DLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS 340
D+ A+ FD++ + G+ N + +A+ ++S M ++PD +T +L
Sbjct: 68 DITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLK 127
Query: 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD--L 398
ACS L+ ++ G+ VHA R G+D+DV + L+ +YAKC L AR ++ + P+ +
Sbjct: 128 ACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTI 187
Query: 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA-----------CVHAG 447
VS A+++AYA +G E + F ++ +PD ++ +S L+A +HA
Sbjct: 188 VSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHAS 247
Query: 448 SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALL 507
+K G E ++P L + + ++ G++ A K+ +P+ ++W A++
Sbjct: 248 VVKMGLE---------IEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMI 295
Query: 508 GGCVSHG 514
G +G
Sbjct: 296 SGYAKNG 302
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/409 (22%), Positives = 163/409 (39%), Gaps = 109/409 (26%)
Query: 1 MYGKCGSLDDAKKVFK--MMPERDCVSWNSVVTACAANG--------------------- 37
+Y KC L A+ VF+ +PER VSW ++V+A A NG
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDW 222
Query: 38 ----LVLEALECLERMS----------------------SLDN----------------- 54
VL A CL+ + SL+
Sbjct: 223 VALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDK 282
Query: 55 -ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLG 113
++PNL+ W+A+I G+ +NGY EAI M M + + P+ +++S + ACA++ L
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA 342
Query: 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCEN 173
+ + Y+ R+ + + F+ + L+D++ +CG + A +F + ++ V + +IVGY +
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFR-------------- 219
G EA L+ ME GV +++ ++ + + E + F
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHY 462
Query: 220 ----DLLMRDG-------------IEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGL 262
DLL R G ++P +G++L AC + G+
Sbjct: 463 ACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGE--------YAA 514
Query: 263 QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNV 311
Q + + Y + +L AA +D + + +MKE G +V
Sbjct: 515 QQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV---RMKEKGLNKDV 560
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 356 bits (913), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 194/593 (32%), Positives = 327/593 (55%), Gaps = 13/593 (2%)
Query: 11 AKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFT 70
A++VF +P+ + SWN+++ A + GL+ E E++ D V+W+ +I G++
Sbjct: 60 ARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDG-----VTWNVLIEGYS 114
Query: 71 QNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP 129
+G A+ M + R TL ++L + +SLGK+ HG + + GF S
Sbjct: 115 LSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYL 174
Query: 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189
V + L+ +Y G + A K+F +N V N+++ G G + +A +LF ME
Sbjct: 175 LVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-- 232
Query: 190 GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK 249
+ +SW +MI G N L EA FR++ ++ G++ + FGSVL AC + ++ +
Sbjct: 233 ---KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ-GLKMDQYPFGSVLPACGGLGAINE 288
Query: 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP 309
GK+IHA I Q +VG AL++MYC+ + L A+ FD ++ + G+
Sbjct: 289 GKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQ 348
Query: 310 NVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHI 369
A+++F +M + PD YT+G +SAC++++++E G Q H AI G V +
Sbjct: 349 TGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTV 408
Query: 370 GTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF 429
+LV +Y KCG + + + ++ D VS AM++AYA G E I F +++ G
Sbjct: 409 SNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGL 468
Query: 430 RPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAY 488
+PD ++ +SAC AG ++ G +F LM + Y + PS+ HY+CM+DL SR+G L EA
Sbjct: 469 KPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAM 528
Query: 489 EFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548
FI +P PD++ W LL C + GNLE G+ AA+ LIEL+P++ Y +L++++A G
Sbjct: 529 RFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKG 588
Query: 549 RWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
+W +A+ R+ M+++ + K PG SWI+ + ++H F A D S ++IY ++
Sbjct: 589 KWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLE 641
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 123/454 (27%), Positives = 202/454 (44%), Gaps = 79/454 (17%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY G + DAKKVF + +R+ V +NS++ A G++ +AL+ M + V
Sbjct: 183 MYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEK------DSV 236
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+A+I G QNG +EAI M+ +GL+ + SVLPAC L ++ GK+ H I
Sbjct: 237 SWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACI 296
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R F + +V + L+D+Y +C + A +F + KN VS ++VGY + G EA
Sbjct: 297 IRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAV 356
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
++F M+ R GI+P +T G + A
Sbjct: 357 KIFLDMQ------------------------------------RSGIDPDHYTLGQAISA 380
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CA+++SL +G + H AI GL V +LV +Y + D+ + F+E+ + +
Sbjct: 381 CANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSW 440
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360
+ +QLF +M+ L PD T+ ++SACS +E+G Q + +
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG-QRYFKLMT 499
Query: 361 CGYDSDVHIG--TALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGI 418
Y IG + ++D++++ G L+ A
Sbjct: 500 SEYGIVPSIGHYSCMIDLFSRSGRLEEA-------------------------------- 527
Query: 419 AHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452
R I F PD I + + LSAC + G+++ G
Sbjct: 528 --MRFINGMPFPPDAIGWTTLLSACRNKGNLEIG 559
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/512 (25%), Positives = 210/512 (41%), Gaps = 78/512 (15%)
Query: 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCEN 173
K HG I R F+ N +V Y A ++F + N S N +++ Y +
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233
G ++E F+++ R ++WN +I GY + L A + ++ T T
Sbjct: 86 GLISEMESTFEKLP----DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR--------------- 278
++L + + GK+IH I LG +S VG L+ MY
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD 201
Query: 279 ------YQDLVAAQMAFDEIENIENLLGKMKED---------GFEPNVYTWNAMQLFSEM 323
Y L+ +A IE+ L M++D G N A++ F EM
Sbjct: 202 DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREM 261
Query: 324 LSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSL 383
L D Y G +L AC L + GKQ+HA IR + +++G+AL+DMY KC L
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 384 KHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443
+A+ + R+ ++VS AM+ Y G +E + F + SG PDH + A+SAC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381
Query: 444 VHAGSIKTGSEFF------DLMAYYDVKPSL-------------------------KHYT 472
+ S++ GS+F L+ Y V SL +T
Sbjct: 382 ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWT 441
Query: 473 CMVDLLSRAGELGEAYEFIKKI---PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL 529
MV ++ G E + K+ + PD V ++ C G +E GQ R +L
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQ----RYFKL 497
Query: 530 EPN------NTGNYVMLANLFAYAGRWSDLAR 555
+ + G+Y + +LF+ +GR + R
Sbjct: 498 MTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMR 529
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 206/610 (33%), Positives = 312/610 (51%), Gaps = 85/610 (13%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGK G L +K + RD V+WN+V+++ N +LEALE L M
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV---------- 294
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
EG+EP+ T+SSVLPAC+ L+ L GKE H Y
Sbjct: 295 --------------------------LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA 328
Query: 121 TRNGFM-SNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+NG + N FV + LVD+Y C +LS ++F + N +I GY +N + EA
Sbjct: 329 LKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEA 388
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
LF ME G+ S T V+
Sbjct: 389 LLLFIGMEESA-----------------------------------GLLANSTTMAGVVP 413
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL 299
AC + + + IH + GL D FV L++MY R + A F ++E+ + +
Sbjct: 414 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 473
Query: 300 GKMKEDGFEPNVYTWNAMQLFSEMLSLD-----------LTPDIYTVGIILSACSSLATM 348
G+ + + +A+ L +M +L+ L P+ T+ IL +C++L+ +
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533
Query: 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAY 408
+GK++HAYAI+ +DV +G+ALVDMYAKCG L+ +R + +I ++++ N ++ AY
Sbjct: 534 AKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAY 593
Query: 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPS 467
MHG+G+E I R ++ G +P+ ++F+S +AC H+G + G F +M Y V+PS
Sbjct: 594 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 653
Query: 468 LKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV-MWGALLGGCVSHGNLEFGQIAADRL 526
HY C+VDLL RAG + EAY+ + +P + W +LLG H NLE G+IAA L
Sbjct: 654 SDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL 713
Query: 527 IELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586
I+LEPN +YV+LAN+++ AG W R+ MK++ + K PGCSWIE DE+HKF A
Sbjct: 714 IQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAG 773
Query: 587 DRSHDRSEEI 596
D SH +SE++
Sbjct: 774 DSSHPQSEKL 783
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 140/545 (25%), Positives = 242/545 (44%), Gaps = 99/545 (18%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTA-CAANG--LVLEALECLERMSSLDNETP 57
+Y KCG KVF + ER+ VSWNS++++ C+ + LEA C
Sbjct: 142 LYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC------------ 189
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL---QKLSLGK 114
M E +EP++ TL SV+ AC+ L + L +GK
Sbjct: 190 ---------------------------MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGK 222
Query: 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG 174
+ H Y R G + N F++N LV +Y + G + S+ + F ++ V+ NT++ C+N
Sbjct: 223 QVHAYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNE 281
Query: 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF 234
+ EA E +M + +G+EP FT
Sbjct: 282 QLLEALEYLREM------------------------------------VLEGVEPDEFTI 305
Query: 235 GSVLIACADMNSLRKGKEIHALAIALG-LQSDTFVGGALVEMYCRYQDLVAAQMAFDEIE 293
SVL AC+ + LR GKE+HA A+ G L ++FVG ALV+MYC + +++ + FD +
Sbjct: 306 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365
Query: 294 NIENLLGKMKEDGFEPNVYTWNAMQLFSEM-LSLDLTPDIYTVGIILSACSSLATMERGK 352
+ + L G+ N + A+ LF M S L + T+ ++ AC R +
Sbjct: 366 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425
Query: 353 QVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHG 412
+H + ++ G D D + L+DMY++ G + A + ++ DLV+ N M+T Y
Sbjct: 426 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSE 485
Query: 413 HGKEGI------AHFRRILASG-----FRPDHISFLSALSACVHAGSIKTGSEFFDLMAY 461
H ++ + + R ++ G +P+ I+ ++ L +C ++ G E
Sbjct: 486 HHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK 545
Query: 462 YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQI 521
++ + + +VD+ ++ G L + + +IP + + W ++ HGN GQ
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN---GQE 601
Query: 522 AADRL 526
A D L
Sbjct: 602 AIDLL 606
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/456 (25%), Positives = 205/456 (44%), Gaps = 44/456 (9%)
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W ++ ++ EA+ M G++P+ ++L A A LQ + LGK+ H ++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 122 RNGF-MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G+ + + V N LV++YR+CGD + K+F + S +N+VS
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS------------------ 166
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
WNS+IS ++ A FR +L + +EP+SFT SV+ A
Sbjct: 167 -----------------WNSLISSLCSFEKWEMALEAFRCML-DENVEPSSFTLVSVVTA 208
Query: 241 CADM---NSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
C+++ L GK++HA + G + ++F+ LV MY + L ++++ +
Sbjct: 209 CSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDL 267
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
+ N A++ EM+ + PD +T+ +L ACS L + GK++HAY
Sbjct: 268 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 327
Query: 358 AIRCG-YDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKE 416
A++ G D + +G+ALVDMY C + R + + + NAM+ Y+ + H KE
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387
Query: 417 GIAHFRRILAS-GFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMV 475
+ F + S G + + + ACV +G+ + + ++
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 447
Query: 476 DLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCV 511
D+ SR G++ A K+ D V W ++ G V
Sbjct: 448 DMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYV 482
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 184/563 (32%), Positives = 308/563 (54%), Gaps = 43/563 (7%)
Query: 42 ALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101
A + ++MS L N+V+W+ +I Q G+ EAI M G E + TLSSV
Sbjct: 222 AYKVFDKMSEL-----NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276
Query: 102 PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV 161
ACA L+ LSLGK+ H + R+G + + V LVD+Y +C
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCS------------------ 316
Query: 162 SCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDN-SLYDEAFSMFRD 220
+G+V + R++FD+ME ++SW ++I+GY+ N +L EA ++F +
Sbjct: 317 ----------ADGSVDDCRKVFDRME----DHSVMSWTALITGYMKNCNLATEAINLFSE 362
Query: 221 LLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQ 280
++ + +EP FTF S AC +++ R GK++ A GL S++ V +++ M+ +
Sbjct: 363 MITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSD 422
Query: 281 DLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS 340
+ AQ AF+ + + DG N+ A +L SE+ +L +T +LS
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLS 482
Query: 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVS 400
+++ ++ +G+Q+H+ ++ G + + AL+ MY+KCGS+ A + + +++S
Sbjct: 483 GVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVIS 542
Query: 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMA 460
+M+T +A HG + F +++ G +P+ +++++ LSAC H G + G F+ M
Sbjct: 543 WTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSM- 601
Query: 461 YYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEF 518
Y D +KP ++HY CMVDLL RAG L +A+EFI +P D ++W LG C H N E
Sbjct: 602 YEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTEL 661
Query: 519 GQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRD 578
G++AA +++EL+PN Y+ L+N++A AG+W + R+KMK+R + K GCSWIE D
Sbjct: 662 GKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGD 721
Query: 579 EIHKFRASDRSHDRSEEIYTIID 601
+IHKF D +H + +IY +D
Sbjct: 722 KIHKFYVGDTAHPNAHQIYDELD 744
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 181/398 (45%), Gaps = 69/398 (17%)
Query: 78 AIGMLFRMQAEGLEP-NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLV 136
A+ L M +G+ P ++ T SS+L +C R + LGK H + + + N L+
Sbjct: 45 AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104
Query: 137 DVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGII 196
+Y + GD A+A ++F+ M G +R ++
Sbjct: 105 SLYSKSGDS-------------------------------AKAEDVFETMRRFG-KRDVV 132
Query: 197 SWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL 256
SW++M++ Y +N +A +F + L G+ P + + +V+ AC++ + + G+
Sbjct: 133 SWSAMMACYGNNGRELDAIKVFVEFL-ELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGF 191
Query: 257 AIALG-LQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315
+ G +SD VG +L++M+ + + + EN + KM E NV TW
Sbjct: 192 LMKTGHFESDVCVGCSLIDMFVKGE---------NSFENAYKVFDKMS----ELNVVTWT 238
Query: 316 --------------AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC 361
A++ F +M+ D +T+ + SAC+ L + GKQ+H++AIR
Sbjct: 239 LMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298
Query: 362 GYDSDVHIGTALVDMYAKC---GSLKHARLAYKRISTPDLVSQNAMLTAYAMHGH-GKEG 417
G DV +LVDMYAKC GS+ R + R+ ++S A++T Y + + E
Sbjct: 299 GLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEA 356
Query: 418 IAHFRRILASG-FRPDHISFLSALSACVHAGSIKTGSE 454
I F ++ G P+H +F SA AC + + G +
Sbjct: 357 INLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQ 394
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 159/356 (44%), Gaps = 40/356 (11%)
Query: 220 DLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR 278
DL+ RDGI P S TF S+L +C R GK +HA I ++ D+ + +L+ +Y +
Sbjct: 50 DLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSK 109
Query: 279 YQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAM--------------QLFSEML 324
D A+ F+ + GK +V +W+AM ++F E L
Sbjct: 110 SGDSAKAEDVFETMRR----FGKR-------DVVSWSAMMACYGNNGRELDAIKVFVEFL 158
Query: 325 SLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCG-YDSDVHIGTALVDMYAKC-GS 382
L L P+ Y ++ ACS+ + G+ + ++ G ++SDV +G +L+DM+ K S
Sbjct: 159 ELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENS 218
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
++A + ++S ++V+ M+T G +E I F ++ SGF D + S SA
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278
Query: 443 CVHAGSIKTGSEFFDLMAYY----DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAP 498
C ++ G + DV+ SL VD+ ++ G + K
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVECSL------VDMYAKCSADGSVDDCRKVFDRME 332
Query: 499 D-SVM-WGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552
D SVM W AL+ G + + NL I + + + N+ ++ F G SD
Sbjct: 333 DHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSD 388
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 55/263 (20%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
M+ K ++DA++ F+ + E++ VS+N+
Sbjct: 417 MFVKSDRMEDAQRAFESLSEKNLVSYNT-------------------------------- 444
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+ G +N E+A +L + L +A T +S+L A + + G++ H +
Sbjct: 445 ----FLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQV 500
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G N V N L+ +Y +CG + +A ++F+ +N +S ++I G+ ++G
Sbjct: 501 VKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVL 560
Query: 181 ELFDQMEHLGVQRGIISWNSMIS-----GYVD------NSLYD--------EAFSMFRDL 221
E F+QM GV+ +++ +++S G V NS+Y+ E ++ DL
Sbjct: 561 ETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDL 620
Query: 222 LMRDGIEPTSFTFGSVLIACADM 244
L R G+ +F F + + AD+
Sbjct: 621 LCRAGLLTDAFEFINTMPFQADV 643
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 201/606 (33%), Positives = 325/606 (53%), Gaps = 46/606 (7%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y G + + F MMPERD SWN VV+ A G + A M D +V+
Sbjct: 103 YMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKD-----VVT 157
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
++++ G+ NGY EEA+ + + +A TL++VL ACA L+ L GK+ H I
Sbjct: 158 LNSLLHGYILNGYAEEALRLFKELN---FSADAITLTTVLKACAELEALKCGKQIHAQIL 214
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
G + + + LV+VY +CGD+ A + + ++ S + +I GY G V E+R
Sbjct: 215 IGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRG 274
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
LFD+ + R +I WNSMISGY+ N++ EA +F + MR+ S T +V+ AC
Sbjct: 275 LFDRKSN----RCVILWNSMISGYIANNMKMEALVLFNE--MRNETREDSRTLAAVINAC 328
Query: 242 ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL-- 299
+ L GK++H A GL D V L++MY + + A F E+E+ + +L
Sbjct: 329 IGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLN 388
Query: 300 ---------GKMKE--------------------DGFEPNVYTWNAMQLFSEMLSLDLTP 330
G++ + +GF N T ++ F +M LDL
Sbjct: 389 SMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPT 448
Query: 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAY 390
D ++ ++SAC+S++++E G+QV A A G DSD + ++L+D+Y KCG ++H R +
Sbjct: 449 DEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVF 508
Query: 391 KRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450
+ D V N+M++ YA +G G E I F+++ +G RP I+F+ L+AC + G ++
Sbjct: 509 DTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVE 568
Query: 451 TGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509
G + F+ M + P +H++CMVDLL+RAG + EA ++++P D MW ++L G
Sbjct: 569 EGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRG 628
Query: 510 CVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSP 569
CV++G G+ AA+++IELEP N+ YV L+ +FA +G W A R+ M++ + K+P
Sbjct: 629 CVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNP 688
Query: 570 GCSWIE 575
G SW +
Sbjct: 689 GSSWTD 694
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 200/387 (51%), Gaps = 12/387 (3%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y KCG L A + + + E D S +++++ A G V E+ +R S+ ++
Sbjct: 231 VYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSN-----RCVI 285
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
W+++I G+ N EA+ + M+ E E ++RTL++V+ AC L L GK+ H +
Sbjct: 286 LWNSMISGYIANNMKMEALVLFNEMRNETRE-DSRTLAAVINACIGLGFLETGKQMHCHA 344
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G + + V + L+D+Y +CG + A K+FS+ + + N++I Y G + +A+
Sbjct: 345 CKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAK 404
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+F+++E+ + +ISWNSM +G+ N E F + D + + SV+ A
Sbjct: 405 RVFERIEN----KSLISWNSMTNGFSQNGCTVETLEYFHQMHKLD-LPTDEVSLSSVISA 459
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CA ++SL G+++ A A +GL SD V +L+++YC+ + + FD + + +
Sbjct: 460 CASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPW 519
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV-HAYAI 359
G+ N + A+ LF +M + P T ++L+AC+ +E G+++ + +
Sbjct: 520 NSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKV 579
Query: 360 RCGYDSDVHIGTALVDMYAKCGSLKHA 386
G+ D + +VD+ A+ G ++ A
Sbjct: 580 DHGFVPDKEHFSCMVDLLARAGYVEEA 606
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/505 (23%), Positives = 218/505 (43%), Gaps = 96/505 (19%)
Query: 100 VLPACARLQKLSLGKEFHGYITRNGFMSNPFVV-NGLVDVYRRCGDMLSALKIFSKFSIK 158
+L +C+ + +L ++ +G + + GF+S+ +V N L+ +Y R G M A +F + +
Sbjct: 32 LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91
Query: 159 NEVSCNTIIVGYCENGNVAEARELFDQME------------------HLGVQR------- 193
N S NT+I GY +G + FD M L V R
Sbjct: 92 NYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP 151
Query: 194 --GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGK 251
+++ NS++ GY+ N +EA +F++L + T +VL ACA++ +L+ GK
Sbjct: 152 EKDVVTLNSLLHGYILNGYAEEALRLFKEL----NFSADAITLTTVLKACAELEALKCGK 207
Query: 252 EIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENL-----------LG 300
+IHA + G++ D+ + +LV +Y + DL A ++I ++ G
Sbjct: 208 QIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCG 267
Query: 301 KMKE--------------------DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS 340
++ E G+ N A+ LF+EM + + D T+ +++
Sbjct: 268 RVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRN-ETREDSRTLAAVIN 326
Query: 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS------------------ 382
AC L +E GKQ+H +A + G D+ + + L+DMY+KCGS
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386
Query: 383 -------------LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF 429
+ A+ ++RI L+S N+M ++ +G E + +F ++
Sbjct: 387 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446
Query: 430 RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489
D +S S +SAC S++ G + F + + ++DL + G +
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506
Query: 490 FIKKIPMAPDSVMWGALLGGCVSHG 514
+ + D V W +++ G ++G
Sbjct: 507 VFDTM-VKSDEVPWNSMISGYATNG 530
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 345 bits (886), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 176/552 (31%), Positives = 306/552 (55%), Gaps = 19/552 (3%)
Query: 55 ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGK 114
++P +++W +VI FT +A+ M+A G P+ SVL +C + L G+
Sbjct: 66 KSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGE 125
Query: 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF---------SIKNEVSCNT 165
HG+I R G + + N L+++Y + M S + + + F S +V T
Sbjct: 126 SVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAET 185
Query: 166 IIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD 225
I+ + + R +F+ M ++ ++S+N++I+GY + +Y++A M R++ D
Sbjct: 186 CIMPF----GIDSVRRVFEVMP----RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD 237
Query: 226 GIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAA 285
++P SFT SVL ++ + KGKEIH I G+ SD ++G +LV+MY + + +
Sbjct: 238 -LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDS 296
Query: 286 QMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSL 345
+ F + + + G+ N A++LF +M++ + P ++ AC+ L
Sbjct: 297 ERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHL 356
Query: 346 ATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAML 405
AT+ GKQ+H Y +R G+ S++ I +ALVDMY+KCG++K AR + R++ D VS A++
Sbjct: 357 ATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Query: 406 TAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YYDV 464
+A+HGHG E ++ F + G +P+ ++F++ L+AC H G + +F+ M Y +
Sbjct: 417 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGL 476
Query: 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAAD 524
L+HY + DLL RAG+L EAY FI K+ + P +W LL C H NLE + A+
Sbjct: 477 NQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAE 536
Query: 525 RLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFR 584
++ ++ N G YV++ N++A GRW ++A+ R +M+ + + K P CSWIE +++ H F
Sbjct: 537 KIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFV 596
Query: 585 ASDRSHDRSEEI 596
+ DRSH ++I
Sbjct: 597 SGDRSHPSMDKI 608
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 168/380 (44%), Gaps = 73/380 (19%)
Query: 8 LDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIG 67
+D ++VF++MP +D VS+N+++ A +G+ +AL + M + D
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD-------------- 237
Query: 68 GFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMS 127
L+P++ TLSSVLP + + GKE HGY+ R G S
Sbjct: 238 ----------------------LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS 275
Query: 128 NPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQME 187
+ ++ + LVD+Y + + + ++FS+ ++ +S N+++ GY +NG EA LF QM
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV 335
Query: 188 HLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSL 247
V+ P + F SV+ ACA + +L
Sbjct: 336 TAKVK------------------------------------PGAVAFSSVIPACAHLATL 359
Query: 248 RKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGF 307
GK++H + G S+ F+ ALV+MY + ++ AA+ FD + ++ + G
Sbjct: 360 HLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGH 419
Query: 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC-GYDSD 366
+ + A+ LF EM + P+ +L+ACS + ++ + G + +
Sbjct: 420 ALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQE 479
Query: 367 VHIGTALVDMYAKCGSLKHA 386
+ A+ D+ + G L+ A
Sbjct: 480 LEHYAAVADLLGRAGKLEEA 499
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 135/286 (47%), Gaps = 70/286 (24%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY K ++D+++VF + RD +SWNS+V NG EAL
Sbjct: 286 MYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALR---------------- 329
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFR-MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
LFR M ++P A SSV+PACA L L LGK+ HGY
Sbjct: 330 ---------------------LFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGY 368
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+ R GF SN F+ + LVD+Y +CG++ +A KIF + ++ +EVS II+G+ +G+ EA
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFR-------------------D 220
LF++M+ GV+ +++ ++++ L DEA+ F D
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 488
Query: 221 LLMRDG-------------IEPTSFTFGSVLIACADMNSLRKGKEI 253
LL R G +EPT + ++L +C+ +L +++
Sbjct: 489 LLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKV 534
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 17/210 (8%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG++ A+K+F M D VSW +++ A +G EA+ E M PN V
Sbjct: 387 MYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR-QGVKPNQV 445
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRM-QAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
++ AV+ + G +EA G M + GL ++V R KL +E + +
Sbjct: 446 AFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL---EEAYNF 502
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSK-FSIKNE------VSCNTIIVGYCE 172
I++ V + L+ ++ A K+ K F++ +E + CN Y
Sbjct: 503 ISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNM----YAS 558
Query: 173 NGNVAEARELFDQMEHLGVQRG-IISWNSM 201
NG E +L +M G+++ SW M
Sbjct: 559 NGRWKEMAKLRLRMRKKGLRKKPACSWIEM 588
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV-DMYAKCGSLKHARLAYKRI 393
+ ++ + + + + KQ+HA IR S H ++V +Y L A L +K +
Sbjct: 8 IKTLIKNPTRIKSKSQAKQLHAQFIRT--QSLSHTSASIVISIYTNLKLLHEALLLFKTL 65
Query: 394 STPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452
+P +++ +++ + + +A F + ASG PDH F S L +C ++ G
Sbjct: 66 KSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 345 bits (884), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 206/667 (30%), Positives = 331/667 (49%), Gaps = 108/667 (16%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
YG+C SL A K+F MP+RD ++WN +V +G +
Sbjct: 33 YGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSG-----------------------N 69
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W E+A+ + MQ G + T+ +L C+ + + G++ HGY+
Sbjct: 70 W-------------EKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVL 116
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
R G SN + N L+ +Y R G + + K+F+ +N S N+I+ Y + G V +A
Sbjct: 117 RLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIG 176
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
L D+ME G++ I++WNS++SGY L +A ++ + + + G++P++ + S+L A
Sbjct: 177 LLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIA-GLKPSTSSISSLLQAV 235
Query: 242 ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD--EIENI---- 295
A+ L+ GK IH + L D +V L++MY + L A+M FD + +NI
Sbjct: 236 AEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWN 295
Query: 296 ---------------ENLLGKMKEDGFEPNVYTWN--------------AMQLFSEMLSL 326
E L+ +M+++G +P+ TWN A+ + +M
Sbjct: 296 SLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEK 355
Query: 327 DLTPDIYTVGIILSACSS-----------------------------------LATMERG 351
+ P++ + I S CS L+ + G
Sbjct: 356 GVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSG 415
Query: 352 KQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH 411
K+VH + +R D ++ TALVDMY K G L+ A + I L S N ML YAM
Sbjct: 416 KEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMF 475
Query: 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKH 470
G G+EGIA F +L +G PD I+F S LS C ++G ++ G ++FDLM + Y + P+++H
Sbjct: 476 GRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEH 535
Query: 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530
+CMVDLL R+G L EA++FI+ + + PD+ +WGA L C H +LE +IA RL LE
Sbjct: 536 CSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLE 595
Query: 531 PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSH 590
P+N+ NY+M+ NL++ RW D+ R R M++ R+ SWI+ +H F A ++H
Sbjct: 596 PHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTH 655
Query: 591 DRSEEIY 597
+IY
Sbjct: 656 PDEGDIY 662
Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 211/461 (45%), Gaps = 65/461 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY + G L+ ++KVF M +R+ SWNS++++ G V +A+ L+ M + P++V
Sbjct: 133 MYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEME-ICGLKPDIV 191
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+W++++ G+ G ++AI +L RMQ GL+P+ ++SS+L A A L LGK HGYI
Sbjct: 192 TWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYI 251
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
RN + +V L+D+Y + G + A +F KN V+ N+++ G + +A
Sbjct: 252 LRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAE 311
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSM----------------------- 217
L +ME G++ I+WNS+ SGY ++A +
Sbjct: 312 ALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGC 371
Query: 218 -----FRDLL------MRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT 266
FR+ L +G+ P + T ++L ++ L GKE+H + L D
Sbjct: 372 SKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDA 431
Query: 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQL------- 319
+V ALV+MY + DL +A F I+N ++ +WN M +
Sbjct: 432 YVATALVDMYGKSGDLQSAIEIFWGIKN--------------KSLASWNCMLMGYAMFGR 477
Query: 320 -------FSEMLSLDLTPDIYTVGIILSACSSLATMERG-KQVHAYAIRCGYDSDVHIGT 371
FS ML + PD T +LS C + ++ G K R G + +
Sbjct: 478 GEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCS 537
Query: 372 ALVDMYAKCGSLKHARLAYKRIS-TPDLVSQNAMLTAYAMH 411
+VD+ + G L A + +S PD A L++ +H
Sbjct: 538 CMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIH 578
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/442 (22%), Positives = 185/442 (41%), Gaps = 77/442 (17%)
Query: 112 LGKEFHGYITRNGF-MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGY 170
LG HG + + G S+ VV+ + Y RC + A K+F + +++++ N I++
Sbjct: 5 LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64
Query: 171 CENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT 230
+GN +A ELF +M+ G + YD
Sbjct: 65 LRSGNWEKAVELFREMQFSGAKA-----------------YDS----------------- 90
Query: 231 SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290
T +L C++ +G++IH + LGL+S+ + +L+ MY R L ++ F+
Sbjct: 91 --TMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFN 148
Query: 291 E---------------------IENIENLLGKMKEDGFEPNVYTWN-------------- 315
+++ LL +M+ G +P++ TWN
Sbjct: 149 SMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKD 208
Query: 316 AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375
A+ + M L P ++ +L A + ++ GK +H Y +R DV++ T L+D
Sbjct: 209 AIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLID 268
Query: 376 MYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHIS 435
MY K G L +AR+ + + ++V+ N++++ + K+ A R+ G +PD I+
Sbjct: 269 MYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAIT 328
Query: 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495
+ S S G + + M V P++ +T + S+ G A + K+
Sbjct: 329 WNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQ 388
Query: 496 ---MAPDSVMWGALLG--GCVS 512
+ P++ LL GC+S
Sbjct: 389 EEGVGPNAATMSTLLKILGCLS 410
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 343 bits (879), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/600 (31%), Positives = 314/600 (52%), Gaps = 69/600 (11%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KCG + A K+F MP + N++S
Sbjct: 294 YVKCGRVIAAHKLFNGMPNK------------------------------------NIIS 317
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W+ ++ G+ QN +EA+ + M GL+P+ SS+L +CA L L G + H Y
Sbjct: 318 WTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTI 377
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
+ ++ +V N L+D+Y +C + A K+F F+ + V N +I GY
Sbjct: 378 KANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGY----------- 426
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
LG Q W EA ++FRD+ R I P+ TF S+L A
Sbjct: 427 -----SRLGTQ-----WE-----------LHEALNIFRDMRFR-LIRPSLLTFVSLLRAS 464
Query: 242 ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGK 301
A + SL K+IH L GL D F G AL+++Y L +++ FDE++ + ++
Sbjct: 465 ASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWN 524
Query: 302 MKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC 361
G+ A+ LF E+ PD +T +++A +LA+++ G++ H ++
Sbjct: 525 SMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584
Query: 362 GYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHF 421
G + + +I AL+DMYAKCGS + A A+ ++ D+V N+++++YA HG GK+ +
Sbjct: 585 GLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQML 644
Query: 422 RRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481
++++ G P++I+F+ LSAC HAG ++ G + F+LM + ++P +HY CMV LL RA
Sbjct: 645 EKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRA 704
Query: 482 GELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541
G L +A E I+K+P P +++W +LL GC GN+E + AA+ I +P ++G++ ML+
Sbjct: 705 GRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLS 764
Query: 542 NLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601
N++A G W++ + R++MK + K PG SWI E+H F + D+SH ++ +IY ++D
Sbjct: 765 NIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLD 824
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/523 (25%), Positives = 225/523 (43%), Gaps = 79/523 (15%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y + G + A+KVF+ MPER NLV
Sbjct: 88 LYSRAGGMVYARKVFEKMPER------------------------------------NLV 111
Query: 61 SWSAVIGGFTQNG-YDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLS--LGKEFH 117
SWS ++ +G Y+E + L + PN LSS + AC+ L + +
Sbjct: 112 SWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQ 171
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
++ ++GF + +V L+D Y + +GN+
Sbjct: 172 SFLVKSGFDRDVYVGTLLIDFYLK-------------------------------DGNID 200
Query: 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237
AR +FD + ++ ++W +MISG V + +F L M D + P + +V
Sbjct: 201 YARLVFDALP----EKSTVTWTTMISGCVKMGRSYVSLQLFYQL-MEDNVVPDGYILSTV 255
Query: 238 LIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
L AC+ + L GK+IHA + GL+ D + L++ Y + ++AA F+ + N
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNI 315
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
+ G++ N AM+LF+ M L PD+Y IL++C+SL + G QVHAY
Sbjct: 316 ISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAY 375
Query: 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHG--- 414
I+ +D ++ +L+DMYAKC L AR + + D+V NAM+ Y+ G
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWEL 435
Query: 415 KEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM 474
E + FR + RP ++F+S L A S+ + LM Y + + + +
Sbjct: 436 HEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSAL 495
Query: 475 VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
+D+ S L ++ ++ + D V+W ++ G V E
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMKV-KDLVIWNSMFAGYVQQSENE 537
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 176/354 (49%), Gaps = 19/354 (5%)
Query: 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223
N +I Y G + AR++F++M +R ++SW++M+S + +Y+E+ +F +
Sbjct: 83 NILINLYSRAGGMVYARKVFEKMP----ERNLVSWSTMVSACNHHGIYEESLVVFLEFWR 138
Query: 224 RDGIEPTSFTFGSVLIACADMNSLRKGK----EIHALAIALGLQSDTFVGGALVEMYCRY 279
P + S + AC+ ++ +G+ ++ + + G D +VG L++ Y +
Sbjct: 139 TRKDSPNEYILSSFIQACSGLDG--RGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKD 196
Query: 280 QDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIIL 339
++ A++ FD + + G ++ ++QLF +++ ++ PD Y + +L
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVL 256
Query: 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLV 399
SACS L +E GKQ+HA+ +R G + D + L+D Y KCG + A + + +++
Sbjct: 257 SACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNII 316
Query: 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459
S +L+ Y + KE + F + G +PD + S L++C ++ G++ +
Sbjct: 317 SWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ----V 372
Query: 460 AYYDVKPSLKH----YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509
Y +K +L + ++D+ ++ L +A + + I A D V++ A++ G
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARK-VFDIFAAADVVLFNAMIEG 425
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/417 (22%), Positives = 171/417 (41%), Gaps = 76/417 (18%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC L DA+KVF + D V +N
Sbjct: 394 MYAKCDCLTDARKVFDIFAAADVVLFN--------------------------------- 420
Query: 61 SWSAVIGGFTQNGYD---EEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFH 117
A+I G+++ G EA+ + M+ + P+ T S+L A A L L L K+ H
Sbjct: 421 ---AMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIH 477
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
G + + G + F + L+DVY C + + +F + +K+ V N++ GY +
Sbjct: 478 GLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE 537
Query: 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237
EA LF +++ L R+ P FTF ++
Sbjct: 538 EALNLFLELQ----------------------------------LSRE--RPDEFTFANM 561
Query: 238 LIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
+ A ++ S++ G+E H + GL+ + ++ AL++MY + A AFD + +
Sbjct: 562 VTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDV 621
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
+ + + A+Q+ +M+S + P+ T +LSACS +E G +
Sbjct: 622 VCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFEL 681
Query: 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-PDLVSQNAMLTAYAMHGH 413
+R G + + +V + + G L AR +++ T P + ++L+ A G+
Sbjct: 682 MLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGN 738
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 121/276 (43%), Gaps = 36/276 (13%)
Query: 253 IHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVY 312
+H I GL+ DT++ L+ +Y R +V A+ F+++ E N+
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP--------------ERNLV 111
Query: 313 TWNAMQ-------LFSEMLSLDL--------TPDIYTVGIILSACSSLATMERGK----Q 353
+W+ M ++ E L + L +P+ Y + + ACS L RG+ Q
Sbjct: 112 SWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDG--RGRWMVFQ 169
Query: 354 VHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGH 413
+ ++ ++ G+D DV++GT L+D Y K G++ +ARL + + V+ M++ G
Sbjct: 170 LQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGR 229
Query: 414 GKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC 473
+ F +++ PD + LSAC ++ G + + Y ++
Sbjct: 230 SYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNV 289
Query: 474 MVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509
++D + G + A++ +P + + W LL G
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMP-NKNIISWTTLLSG 324
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/617 (31%), Positives = 308/617 (49%), Gaps = 102/617 (16%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG DDA K+F+MM D V+WN
Sbjct: 283 MYSKCGRFDDASKLFRMMSRADTVTWN--------------------------------- 309
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+I G+ Q+G EE++ + M + G+ P+A T SS+LP+ ++ + L K+ H YI
Sbjct: 310 ---CMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYI 366
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R+ + F+ + L+D Y +C + A IFS+ CN++
Sbjct: 367 MRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ--------CNSV-------------- 404
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
++ + +MISGY+ N LY ++ MFR L++ I P T S+L
Sbjct: 405 -------------DVVVFTAMISGYLHNGLYIDSLEMFR-WLVKVKISPNEITLVSILPV 450
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
+ +L+ G+E+H I G + +G A+++MY + + A F+ +
Sbjct: 451 IGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS------- 503
Query: 301 KMKEDGFEPNVYTWNAM--------------QLFSEMLSLDLTPDIYTVGIILSACSSLA 346
K D + +WN+M +F +M + D ++ LSAC++L
Sbjct: 504 --KRD-----IVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLP 556
Query: 347 TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLT 406
+ GK +H + I+ SDV+ + L+DMYAKCG+LK A +K + ++VS N+++
Sbjct: 557 SESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIA 616
Query: 407 AYAMHGHGKEGIAHFRRIL-ASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDV 464
A HG K+ + F ++ SG RPD I+FL +S+C H G + G FF M Y +
Sbjct: 617 ACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGI 676
Query: 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAAD 524
+P +HY C+VDL RAG L EAYE +K +P PD+ +WG LLG C H N+E ++A+
Sbjct: 677 QPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASS 736
Query: 525 RLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFR 584
+L++L+P+N+G YV+++N A A W + + R MK+R + K PG SWIE H F
Sbjct: 737 KLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFV 796
Query: 585 ASDRSHDRSEEIYTIID 601
+ D +H S IY++++
Sbjct: 797 SGDVNHPESSHIYSLLN 813
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/563 (24%), Positives = 260/563 (46%), Gaps = 62/563 (11%)
Query: 1 MYGKCGSLDDAKKVFKMMPER--DCVSWNSVVTACAANGLVLEALECLERM----SSLDN 54
MY CGS D K+F + R WNS++++ NGL+ +AL +M S D
Sbjct: 79 MYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDV 138
Query: 55 ET-PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLG 113
T P LV + F + + + L G++ N SS++ A K+ +
Sbjct: 139 STFPCLVKACVALKNFKGIDFLSDTVSSL------GMDCNEFVASSLIKAYLEYGKIDVP 192
Query: 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI----KNEVS--C---- 163
+ + + + ++NG Y +CG + S +K FS + N V+ C
Sbjct: 193 SKLFDRVLQKDCVIWNVMLNG----YAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248
Query: 164 -----------------------------NTIIVGYCENGNVAEARELFDQMEHLGVQRG 194
N+++ Y + G +A +LF M +
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMS----RAD 304
Query: 195 IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIH 254
++WN MISGYV + L +E+ + F +++ G+ P + TF S+L + + +L K+IH
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMI-SSGVLPDAITFSSLLPSVSKFENLEYCKQIH 363
Query: 255 ALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTW 314
+ + D F+ AL++ Y + + + AQ F + +++ ++ G+ N
Sbjct: 364 CYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYI 423
Query: 315 NAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV 374
+++++F ++ + ++P+ T+ IL L ++ G+++H + I+ G+D+ +IG A++
Sbjct: 424 DSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVI 483
Query: 375 DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI 434
DMYAKCG + A ++R+S D+VS N+M+T A + I FR++ SG D +
Sbjct: 484 DMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCV 543
Query: 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494
S +ALSAC + S G M + + + + ++D+ ++ G L A K +
Sbjct: 544 SISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTM 603
Query: 495 PMAPDSVMWGALLGGCVSHGNLE 517
+ V W +++ C +HG L+
Sbjct: 604 K-EKNIVSWNSIIAACGNHGKLK 625
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 155/352 (44%), Gaps = 34/352 (9%)
Query: 91 EPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALK 150
E R LS +L AC+ L GK+ H ++ N + + ++ +Y CG K
Sbjct: 32 ETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGK 91
Query: 151 IFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSL 210
+F + ++ + I WNS+IS +V N L
Sbjct: 92 MFYRLDLR---------------------------------RSSIRPWNSIISSFVRNGL 118
Query: 211 YDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGG 270
++A + + +L G+ P TF ++ AC + + + + +LG+ + FV
Sbjct: 119 LNQALAFYFKMLCF-GVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVAS 177
Query: 271 ALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP 330
+L++ Y Y + FD + + ++ + +G+ + ++ FS M ++P
Sbjct: 178 SLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISP 237
Query: 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAY 390
+ T +LS C+S ++ G Q+H + G D + I +L+ MY+KCG A +
Sbjct: 238 NAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLF 297
Query: 391 KRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
+ +S D V+ N M++ Y G +E + F +++SG PD I+F S L +
Sbjct: 298 RMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 7/285 (2%)
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
+L AC++ N LR+GK++HA I + D++ ++ MY F ++
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 297 NLLGKMKE--DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV 354
+ + F N A+ + +ML ++PD+ T ++ AC +L + +
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160
Query: 355 HAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHG 414
G D + + ++L+ Y + G + + R+ D V N ML YA G
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220
Query: 415 KEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY--YDVKPSLKHYT 472
I F + P+ ++F LS C I G + L+ D + S+K+
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN-- 278
Query: 473 CMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
++ + S+ G +A + + + A D+V W ++ G V G +E
Sbjct: 279 SLLSMYSKCGRFDDASKLFRMMSRA-DTVTWNCMISGYVQSGLME 322
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 5/202 (2%)
Query: 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS 394
+ ++L ACS+ + +GKQVHA+ I D + ++ MYA CGS + R+
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97
Query: 395 T--PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452
+ N++++++ +G + +A + ++L G PD +F + ACV + K
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157
Query: 453 SEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVS 512
D ++ + + + ++ G++ + ++ + D V+W +L G
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVMLNGYAK 216
Query: 513 HGNLE--FGQIAADRLIELEPN 532
G L+ + R+ ++ PN
Sbjct: 217 CGALDSVIKGFSVMRMDQISPN 238
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 339 bits (869), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 208/639 (32%), Positives = 329/639 (51%), Gaps = 49/639 (7%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y K L+ A+++F + E D ++ ++V+ A+G + A E+ +T V
Sbjct: 58 VYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDT---V 114
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL---QKLSLGKEFH 117
++A+I GF+ N AI + +M+ EG +P+ T +SVL A + +K + +FH
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCV--QFH 172
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGD----MLSALKIFSKFSIKNEVSCNTIIVGYCEN 173
++G V N LV VY +C + SA K+F + K+E S T++ GY +N
Sbjct: 173 AAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKN 232
Query: 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233
G EL + M+ ++++N+MISGYV+ Y EA M R ++ GIE FT
Sbjct: 233 GYFDLGEELLEGMDD---NMKLVAYNAMISGYVNRGFYQEALEMVRRMV-SSGIELDEFT 288
Query: 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR--------------- 278
+ SV+ ACA L+ GK++HA + S F +LV +Y +
Sbjct: 289 YPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF-DNSLVSLYYKCGKFDEARAIFEKMP 347
Query: 279 YQDLVA----------------AQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSE 322
+DLV+ A++ F E++ L + G N + ++LFS
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 323 MLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382
M P Y + +C+ L G+Q HA ++ G+DS + G AL+ MYAKCG
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGV 467
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
++ AR ++ + D VS NA++ A HGHG E + + +L G RPD I+ L+ L+A
Sbjct: 468 VEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTA 527
Query: 443 CVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV 501
C HAG + G ++FD M Y + P HY ++DLL R+G+ +A I+ +P P +
Sbjct: 528 CSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAE 587
Query: 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561
+W ALL GC HGN+E G IAAD+L L P + G Y++L+N+ A G+W ++AR R+ M+
Sbjct: 588 IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMR 647
Query: 562 DRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTII 600
DR + K CSWIE ++H F D SH +E +Y +
Sbjct: 648 DRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYL 686
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/490 (25%), Positives = 217/490 (44%), Gaps = 75/490 (15%)
Query: 94 ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFS 153
A L LP R L L + HG I GF ++N L+DVY + ++ A ++F
Sbjct: 16 AANLRLCLPL--RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFD 73
Query: 154 KFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE 213
+ S ++++ T++ GYC +G++ AR +F++ R + +N+MI+G+ N+
Sbjct: 74 EISEPDKIARTTMVSGYCASGDITLARGVFEKAP--VCMRDTVMYNAMITGFSHNNDGYS 131
Query: 214 AFSMFRDLLMRDGIEPTSFTFGSVLIACADM-NSLRKGKEIHALAIALGLQSDTFVGGAL 272
A ++F + +G +P +FTF SVL A + + ++ + HA A+ G T V AL
Sbjct: 132 AINLFCK-MKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNAL 190
Query: 273 VEMYCRYQD----LVAAQMAFDEI-------------------------ENIENLLGKMK 303
V +Y + L +A+ FDEI E +E + MK
Sbjct: 191 VSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMK 250
Query: 304 E-------DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356
G+ + A+++ M+S + D +T ++ AC++ ++ GKQVHA
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 357 YAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGH--- 413
Y +R D H +LV +Y KCG AR ++++ DLVS NA+L+ Y GH
Sbjct: 311 YVLR-REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369
Query: 414 ----------------------------GKEGIAHFRRILASGFRPDHISFLSALSACVH 445
G+EG+ F + GF P +F A+ +C
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429
Query: 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA 505
G+ G ++ + SL ++ + ++ G + EA + + +P DSV W A
Sbjct: 430 LGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP-CLDSVSWNA 488
Query: 506 LLGGCVSHGN 515
L+ HG+
Sbjct: 489 LIAALGQHGH 498
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 335 bits (859), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 189/567 (33%), Positives = 303/567 (53%), Gaps = 59/567 (10%)
Query: 53 DNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSL 112
++E N S++A+I G++Q + +A+ + R+ + GL + +LS V ACA ++ LS
Sbjct: 341 NSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSE 400
Query: 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCE 172
G + +G ++ + V N +D+Y +C +
Sbjct: 401 GLQIYGLAIKSSLSLDVCVANAAIDMYGKCQAL--------------------------- 433
Query: 173 NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSF 232
AEA +FD+M +R +SWN++I+ + N E +F +L R IEP F
Sbjct: 434 ----AEAFRVFDEMR----RRDAVSWNAIIAAHEQNGKGYETLFLFVSML-RSRIEPDEF 484
Query: 233 TFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292
TFGS+L AC SL G EIH+ + G+ S++ VG +L++MY + + A+
Sbjct: 485 TFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF 543
Query: 293 ENIENLLGKMKE------DGFEPNVYTWN--------------AMQLFSEMLSLDLTPDI 332
N+ G M+E + +WN A LF+ M+ + +TPD
Sbjct: 544 FQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDK 603
Query: 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKR 392
+T +L C++LA+ GKQ+HA I+ SDV+I + LVDMY+KCG L +RL +++
Sbjct: 604 FTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEK 663
Query: 393 ISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452
D V+ NAM+ YA HG G+E I F R++ +P+H++F+S L AC H G I G
Sbjct: 664 SLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG 723
Query: 453 SEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCV 511
E+F +M Y + P L HY+ MVD+L ++G++ A E I+++P D V+W LLG C
Sbjct: 724 LEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCT 783
Query: 512 SH-GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570
H N+E + A L+ L+P ++ Y +L+N++A AG W ++ R+ M+ ++ K PG
Sbjct: 784 IHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPG 843
Query: 571 CSWIEDRDEIHKFRASDRSHDRSEEIY 597
CSW+E +DE+H F D++H R EEIY
Sbjct: 844 CSWVELKDELHVFLVGDKAHPRWEEIY 870
Score = 192 bits (487), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 139/541 (25%), Positives = 245/541 (45%), Gaps = 67/541 (12%)
Query: 11 AKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETP--NLVSWSAVIGG 68
A VF MP RD VSWN ++ + + + +A +S N P ++VSW++++ G
Sbjct: 102 ASMVFDKMPLRDVVSWNKMINGYSKSNDMFKA-------NSFFNMMPVRDVVSWNSMLSG 154
Query: 69 FTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSN 128
+ QNG ++I + M EG+E + RT + +L C+ L+ SLG + HG + R G ++
Sbjct: 155 YLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTD 214
Query: 129 PFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188
+ L+D+Y + + +L++F KN VS
Sbjct: 215 VVAASALLDMYAKGKRFVESLRVFQGIPEKNSVS-------------------------- 248
Query: 189 LGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL-MRDGIEPTSFTFGSVLIACADMNSL 247
W+++I+G V N+L A F+++ + G+ + + SVL +CA ++ L
Sbjct: 249 ---------WSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQS--IYASVLRSCAALSEL 297
Query: 248 RKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGF 307
R G ++HA A+ +D V A ++MY + ++ AQ+ FD EN+ G+
Sbjct: 298 RLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGY 357
Query: 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDV 367
+ + A+ LF ++S L D ++ + AC+ + + G Q++ AI+ DV
Sbjct: 358 SQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDV 417
Query: 368 HIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS 427
+ A +DMY KC +L A + + D VS NA++ A+ +G G E + F +L S
Sbjct: 418 CVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRS 477
Query: 428 GFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487
PD +F S L AC GS+ G E + + + ++D+ S+ G + EA
Sbjct: 478 RIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEA 536
Query: 488 -------------------YEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIE 528
E + + V W +++ G V E Q+ R++E
Sbjct: 537 EKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMME 596
Query: 529 L 529
+
Sbjct: 597 M 597
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 209/424 (49%), Gaps = 14/424 (3%)
Query: 96 TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155
S V CA+ L LGK+ H ++ +GF FV+N L+ VY D +SA +F K
Sbjct: 50 NFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKM 109
Query: 156 SIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215
+++ VS N +I GY ++ ++ +A F+ M R ++SWNSM+SGY+ N ++
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMP----VRDVVSWNSMLSGYLQNGESLKSI 165
Query: 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEM 275
+F D + R+GIE TF +L C+ + G +IH + + +G +D AL++M
Sbjct: 166 EVFVD-MGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDM 224
Query: 276 YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTV 335
Y + + V + F I ++ G N A++ F EM ++
Sbjct: 225 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 284
Query: 336 GIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST 395
+L +C++L+ + G Q+HA+A++ + +D + TA +DMYAKC +++ A++ +
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSEN 344
Query: 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEF 455
+ S NAM+T Y+ HG + + F R+++SG D IS AC + G +
Sbjct: 345 LNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 404
Query: 456 FDLMAYYDVKPSLKHYTCM----VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCV 511
+ L +K SL C+ +D+ + L EA+ ++ D+V W A++
Sbjct: 405 YGLA----IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHE 459
Query: 512 SHGN 515
+G
Sbjct: 460 QNGK 463
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 179/402 (44%), Gaps = 84/402 (20%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGKC +L +A +VF M RD VSWN+++ A
Sbjct: 426 MYGKCQALAEAFRVFDEMRRRDAVSWNAIIAA---------------------------- 457
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
QNG E + + M +EP+ T S+L AC L G E H I
Sbjct: 458 --------HEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSI 508
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
++G SN V L+D+Y +CG + A KI S+F + NV+
Sbjct: 509 VKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRF---------------FQRANVSGTM 553
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
E ++M + +Q +SWNS+ISGYV ++A +F +M GI P FT+ +VL
Sbjct: 554 EELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTR-MMEMGITPDKFTYATVLDT 612
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CA++ S GK+IHA I LQSD ++ LV+MY + DL +++ F
Sbjct: 613 CANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMF----------- 661
Query: 301 KMKEDGFEPNVYTWNAM--------------QLFSEMLSLDLTPDIYTVGIILSACSSLA 346
E + TWNAM QLF M+ ++ P+ T IL AC+ +
Sbjct: 662 ---EKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718
Query: 347 TMERGKQVHAYAIRCGYDSDVHIG--TALVDMYAKCGSLKHA 386
+++G + + Y ++ Y D + + +VD+ K G +K A
Sbjct: 719 LIDKGLE-YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRA 759
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 37/305 (12%)
Query: 184 DQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR-DGIEPTSFTFGSVLIACA 242
+ + L + R ++S+N ++ + +FS F D L + + + T+F+F V CA
Sbjct: 3 ESLRLLHMTRSVVSFNRCLTEKISYRRV-PSFSYFTDFLNQVNSVSTTNFSF--VFKECA 59
Query: 243 DMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302
+L GK+ HA I G + TFV L+++Y +D V+A M FD++ + +++
Sbjct: 60 KQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMP-LRDVVSWN 118
Query: 303 K--------EDGFEPN----------VYTWNAM--------------QLFSEMLSLDLTP 330
K D F+ N V +WN+M ++F +M +
Sbjct: 119 KMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEF 178
Query: 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAY 390
D T IIL CS L G Q+H +R G D+DV +AL+DMYAK + +
Sbjct: 179 DGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 238
Query: 391 KRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450
+ I + VS +A++ + + F+ + + S L +C ++
Sbjct: 239 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 298
Query: 451 TGSEF 455
G +
Sbjct: 299 LGGQL 303
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 188/595 (31%), Positives = 317/595 (53%), Gaps = 60/595 (10%)
Query: 10 DAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGF 69
DA+K+F MP+R+ +SWN +V+ NG + EA + + M N+VSW+A++ G+
Sbjct: 66 DARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPER-----NVVSWTALVKGY 120
Query: 70 TQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP 129
NG + A + ++M E N + + +L
Sbjct: 121 VHNGKVDVAESLFWKMP----EKNKVSWTVMLIG-------------------------- 150
Query: 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189
F+ +G +D A K++ K+ ++ ++I G C+ G V EARE+FD+M
Sbjct: 151 FLQDGRID---------DACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS-- 199
Query: 190 GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK 249
+R +I+W +M++GY N+ D+A +F D++ E T ++ S+L+ +
Sbjct: 200 --ERSVITWTTMVTGYGQNNRVDDARKIF-DVMP----EKTEVSWTSMLMGYVQNGRIED 252
Query: 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP 309
+E+ + A++ + ++ A+ FD ++ + + E
Sbjct: 253 AEELFEVMPV----KPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHER 308
Query: 310 NVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHI 369
N + A+ LF M + P T+ ILS C+SLA++ GKQVHA +RC +D DV++
Sbjct: 309 NGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYV 368
Query: 370 GTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG- 428
+ L+ MY KCG L ++L + R + D++ N++++ YA HG G+E + F + SG
Sbjct: 369 ASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGS 428
Query: 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAGELGEA 487
+P+ ++F++ LSAC +AG ++ G + ++ M + + VKP HY CMVD+L RAG EA
Sbjct: 429 TKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEA 488
Query: 488 YEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547
E I + + PD+ +WG+LLG C +H L+ + A +LIE+EP N+G Y++L+N++A
Sbjct: 489 MEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQ 548
Query: 548 GRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKF-RASDRSHDRSEEIYTIID 601
GRW+D+A R+ MK R + KSPGCSW E +++H F R SH E I I+D
Sbjct: 549 GRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILD 603
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 199/442 (45%), Gaps = 44/442 (9%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y K G +D+A+KVF +MPER+ VSW ++V NG V A +M N VS
Sbjct: 89 YMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE-----KNKVS 143
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W+ ++ GF Q+G ++A L+ M + + ART S++ + ++ +E ++
Sbjct: 144 WTVMLIGFLQDGRIDDACK-LYEMIPDK-DNIART--SMIHGLCKEGRVDEAREIFDEMS 199
Query: 122 RNGFMSNPFVVNGL-----VDVYRRCGDMLS----------------------ALKIFSK 154
++ +V G VD R+ D++ A ++F
Sbjct: 200 ERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEV 259
Query: 155 FSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214
+K ++CN +I G + G +A+AR +FD M+ +R SW ++I + N EA
Sbjct: 260 MPVKPVIACNAMISGLGQKGEIAKARRVFDSMK----ERNDASWQTVIKIHERNGFELEA 315
Query: 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVE 274
+F L+ + G+ PT T S+L CA + SL GK++HA + D +V L+
Sbjct: 316 LDLF-ILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMT 374
Query: 275 MYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEM-LSLDLTPDIY 333
MY + +LV +++ FD + + ++ G+ + A+++F EM LS P+
Sbjct: 375 MYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEV 434
Query: 334 TVGIILSACSSLATMERGKQVH-AYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKR 392
T LSACS +E G +++ + G +VDM + G A
Sbjct: 435 TFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDS 494
Query: 393 IST-PDLVSQNAMLTAYAMHGH 413
++ PD ++L A H
Sbjct: 495 MTVEPDAAVWGSLLGACRTHSQ 516
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 151/298 (50%), Gaps = 13/298 (4%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y + G ++DA+++F++MP + ++ N++++ G + +A + M ++ S
Sbjct: 244 YVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERND-----AS 298
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W VI +NG++ EA+ + MQ +G+ P TL S+L CA L L GK+ H +
Sbjct: 299 WQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLV 358
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
R F + +V + L+ +Y +CG+++ + IF +F K+ + N+II GY +G EA +
Sbjct: 359 RCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALK 418
Query: 182 LFDQMEHLG-VQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+F +M G + +++ + +S + +E ++ + G++P + + ++
Sbjct: 419 VFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMV-- 476
Query: 241 CADMNSLRKGKEIHALAI--ALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
DM R G+ A+ + ++ ++ D V G+L+ + L A+ ++ IE
Sbjct: 477 --DMLG-RAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIE 531
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/455 (21%), Positives = 175/455 (38%), Gaps = 59/455 (12%)
Query: 129 PFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188
P N + R G + A K+F K+ S N+++ GY N +AR+LFD+M
Sbjct: 17 PPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMP- 75
Query: 189 LGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLR 248
R IISWN ++SGY+ N DEA +F + R+ + T+ G V D+
Sbjct: 76 ---DRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESL 132
Query: 249 KGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKE---- 304
K ++ + F+ ++ C+ +++ + D I + G KE
Sbjct: 133 FWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK---DNIARTSMIHGLCKEGRVD 189
Query: 305 -------DGFEPNVYTWNAMQL-FSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356
+ E +V TW M + + +D I+ V M +V
Sbjct: 190 EAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDV------------MPEKTEVSW 237
Query: 357 YAIRCGYDSDVHIG-----------------TALVDMYAKCGSLKHARLAYKRISTPDLV 399
++ GY + I A++ + G + AR + + +
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297
Query: 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459
S ++ + +G E + F + G RP + +S LS C S+ G + +
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 460 AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFG 519
+ + ++ + + GEL ++ + P + D +MW +++ G SHG G
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFP-SKDIIMWNSIISGYASHG---LG 413
Query: 520 QIAADRLIEL------EPNNTGNYVMLANLFAYAG 548
+ A E+ +PN +V + +YAG
Sbjct: 414 EEALKVFCEMPLSGSTKPNEV-TFVATLSACSYAG 447
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG L +K +F P +D + WNS+++ A++GL EAL+ M + PN V
Sbjct: 375 MYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEV 434
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEP 92
++ A + + G EE + + M++ G++P
Sbjct: 435 TFVATLSACSYAGMVEEGLKIYESMESVFGVKP 467
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 332 bits (850), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 190/555 (34%), Positives = 307/555 (55%), Gaps = 18/555 (3%)
Query: 55 ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGK 114
+ PNL+ W+ + G + A+ + M + GL PN+ T VL +CA+ + G+
Sbjct: 95 QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 154
Query: 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG 174
+ HG++ + G + +V L+ +Y + G + A K+F K ++ VS +I GY G
Sbjct: 155 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRG 214
Query: 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF 234
+ A++LFD++ + ++SWN+MISGY + Y EA +F+D+ M+ + P T
Sbjct: 215 YIENAQKLFDEIP----VKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTM 269
Query: 235 GSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAA-----QMAF 289
+V+ ACA S+ G+++H G S+ + AL+++Y + +L A ++ +
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 290 DEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATME 349
++ + L+G N+Y A+ LF EML TP+ T+ IL AC+ L ++
Sbjct: 330 KDVISWNTLIGGYTH----MNLYK-EALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384
Query: 350 RGKQVHAYAIR--CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTA 407
G+ +H Y + G + + T+L+DMYAKCG ++ A + I L S NAM+
Sbjct: 385 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 444
Query: 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKP 466
+AMHG F R+ G +PD I+F+ LSAC H+G + G F M Y + P
Sbjct: 445 FAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTP 504
Query: 467 SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRL 526
L+HY CM+DLL +G EA E I + M PD V+W +LL C HGN+E G+ A+ L
Sbjct: 505 KLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENL 564
Query: 527 IELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586
I++EP N G+YV+L+N++A AGRW+++A+TR + D+ M K PGCS IE +H+F
Sbjct: 565 IKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIG 624
Query: 587 DRSHDRSEEIYTIID 601
D+ H R+ EIY +++
Sbjct: 625 DKFHPRNREIYGMLE 639
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 202/441 (45%), Gaps = 85/441 (19%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETP--N 58
MY + G L+DA KVF P RD VS+ +++ A+ G + E L +E P +
Sbjct: 178 MYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI-------ENAQKLFDEIPVKD 230
Query: 59 LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHG 118
+VSW+A+I G+ + G +EA+ + M + P+ T+ +V+ ACA+ + LG++ H
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL 290
Query: 119 YITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAE 178
+I +GF SN +VN L+D+Y +CG++ +A +F + K+ +S NT+I GY
Sbjct: 291 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGY-------- 342
Query: 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVL 238
H+ +LY EA +F+++L R G P T S+L
Sbjct: 343 --------THM-------------------NLYKEALLLFQEML-RSGETPNDVTMLSIL 374
Query: 239 IACADMNSLRKGKEIHALAIAL--GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
ACA + ++ G+ IH G+ + + + +L++MY + D+ AA F+ I
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI---- 430
Query: 297 NLLGKMKEDGFEPNVYTWNAM--------------QLFSEMLSLDLTPDIYTVGIILSAC 342
++ +WNAM LFS M + + PD T +LSAC
Sbjct: 431 ----------LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Query: 343 SSLATMERGKQV-----HAYAIRCGYDSDVHIGTALVDMYAKCGSLK-HARLAYKRISTP 396
S ++ G+ + Y + + H G ++D+ G K + P
Sbjct: 481 SHSGMLDLGRHIFRTMTQDYKMTPKLE---HYG-CMIDLLGHSGLFKEAEEMINMMEMEP 536
Query: 397 DLVSQNAMLTAYAMHGHGKEG 417
D V ++L A MHG+ + G
Sbjct: 537 DGVIWCSLLKACKMHGNVELG 557
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 83/191 (43%), Gaps = 4/191 (2%)
Query: 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD---MYAKCGSLKHARLAYKRIST 395
LS + T++ + +HA I+ G + + + L++ + L +A +K I
Sbjct: 37 LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96
Query: 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEF 455
P+L+ N M +A+ + + +++ G P+ +F L +C + + K G +
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 456 FDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGN 515
+ L +T ++ + + G L +A++ K P D V + AL+ G S G
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR-DVVSYTALIKGYASRGY 215
Query: 516 LEFGQIAADRL 526
+E Q D +
Sbjct: 216 IENAQKLFDEI 226
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 183/599 (30%), Positives = 307/599 (51%), Gaps = 74/599 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY +C SL+DA K+F M E N V
Sbjct: 127 MYCECRSLEDADKLFDEMSEL------------------------------------NAV 150
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
S + +I + + G ++A+G+ M A G +P + +++L + + L G++ H ++
Sbjct: 151 SRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHV 210
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R G SN + G+V++Y +CG ++ A ++F + ++K V+C ++VGY + G +A
Sbjct: 211 IRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDAL 270
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+LF VD L+ +G+E SF F VL A
Sbjct: 271 KLF----------------------VD--------------LVTEGVEWDSFVFSVVLKA 294
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
CA + L GK+IHA LGL+S+ VG LV+ Y + +A AF EI ++
Sbjct: 295 CASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSW 354
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATMERGKQVHAYAI 359
G+ A++ F + S + + + +T I ACS LA G QVHA AI
Sbjct: 355 SAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAI 414
Query: 360 RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA 419
+ + +AL+ MY+KCG L A ++ + PD+V+ A ++ +A +G+ E +
Sbjct: 415 KRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALR 474
Query: 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLL 478
F ++++ G +P+ ++F++ L+AC HAG ++ G D M Y+V P++ HY CM+D+
Sbjct: 475 LFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIY 534
Query: 479 SRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538
+R+G L EA +F+K +P PD++ W L GC +H NLE G+IA + L +L+P +T YV
Sbjct: 535 ARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYV 594
Query: 539 MLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIY 597
+ NL+ +AG+W + A + M +R + K CSWI+++ +IH+F D+ H +++EIY
Sbjct: 595 LPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIY 653
Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 122/491 (24%), Positives = 222/491 (45%), Gaps = 73/491 (14%)
Query: 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVV--NG 134
EA L M G+ ++ + + AC L+ LS G+ H + R G + NP V+ N
Sbjct: 66 EAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRM-RMG-IENPSVLLQNC 123
Query: 135 LVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRG 194
++ +Y C + A K+F + S N VS T+I Y E G
Sbjct: 124 VLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQG-------------------- 163
Query: 195 IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIH 254
+ D+A +F +L G +P S + ++L + + +L G++IH
Sbjct: 164 ---------------ILDKAVGLFSGMLA-SGDKPPSSMYTTLLKSLVNPRALDFGRQIH 207
Query: 255 ALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTW 314
A I GL S+T + +V MY + LV A+ FD++ + + G+
Sbjct: 208 AHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRAR 267
Query: 315 NAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV 374
+A++LF ++++ + D + ++L AC+SL + GKQ+HA + G +S+V +GT LV
Sbjct: 268 DALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLV 327
Query: 375 DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DH 433
D Y KC S + A A++ I P+ VS +A+++ Y +E + F+ + + +
Sbjct: 328 DFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNS 387
Query: 434 ISFLSALSAC-----------VHAGSIK---TGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479
++ S AC VHA +IK GS++ + + ++ + S
Sbjct: 388 FTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGE--------------SALITMYS 433
Query: 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIE--LEPNNTGNY 537
+ G L +A E + + PD V W A + G +GN ++++ ++PN+ +
Sbjct: 434 KCGCLDDANEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSV-TF 491
Query: 538 VMLANLFAYAG 548
+ + ++AG
Sbjct: 492 IAVLTACSHAG 502
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 137/299 (45%), Gaps = 4/299 (1%)
Query: 212 DEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT-FVGG 270
+EAF +++ + G+ +S+++ + AC ++ SL G+ +H + +G+++ + +
Sbjct: 65 NEAFEFLQEM-DKAGVSVSSYSYQCLFEACRELRSLSHGRLLHD-RMRMGIENPSVLLQN 122
Query: 271 ALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP 330
+++MYC + L A FDE+ + + + A+ LFS ML+ P
Sbjct: 123 CVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKP 182
Query: 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAY 390
+L + + ++ G+Q+HA+ IR G S+ I T +V+MY KCG L A+ +
Sbjct: 183 PSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVF 242
Query: 391 KRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450
+++ V+ ++ Y G ++ + F ++ G D F L AC +
Sbjct: 243 DQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELN 302
Query: 451 TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509
G + +A ++ + T +VD + A ++I P+ V W A++ G
Sbjct: 303 LGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEI-REPNDVSWSAIISG 360
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 118/301 (39%), Gaps = 63/301 (20%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNS-------------------------------- 28
MY KCG LDDA +VF+ M D V+W +
Sbjct: 431 MYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVT 490
Query: 29 ---VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRM 85
V+TAC+ GLV + CL+ M N P + + +I + ++G +EA+ + M
Sbjct: 491 FIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNM 550
Query: 86 QAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRN-------GFMSNPFVVNGLVDV 138
EP+A + L C + L LG E G R G++ PF +
Sbjct: 551 P---FEPDAMSWKCFLSGCWTHKNLELG-EIAGEELRQLDPEDTAGYVL-PFNLYTWAGK 605
Query: 139 YRRCGDMLSALKIFSKFSIKNEVSCNTI---------IVGYCENGNVAEARELFDQMEHL 189
+ +M +K+ ++ +K E+SC+ I IVG + + + +E++++++
Sbjct: 606 WEEAAEM---MKLMNERMLKKELSCSWIQEKGKIHRFIVG---DKHHPQTQEIYEKLKEF 659
Query: 190 -GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLR 248
G G + +M + E ++ L+ G P L AC D +
Sbjct: 660 DGFMEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFA 719
Query: 249 K 249
K
Sbjct: 720 K 720
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/535 (33%), Positives = 294/535 (54%), Gaps = 37/535 (6%)
Query: 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLV 136
EA+ +L R + +P A T +++ C++ + L GK+ H +I +GF+ + N L+
Sbjct: 72 EAVQLLGRAK----KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLL 127
Query: 137 DVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGII 196
+Y +CG ++ A K+F + ++ S N ++ GY E G + EAR+LFD+M ++
Sbjct: 128 RMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM----TEKDSY 183
Query: 197 SWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL 256
SW +M++GYV +EA ++ + P FT + A A + +R+GKEIH
Sbjct: 184 SWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGH 243
Query: 257 AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316
+ GL SD + +L++MY + + A+ FD+I E +V +W +
Sbjct: 244 IVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI--------------VEKDVVSWTS 289
Query: 317 M--------------QLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCG 362
M LFSE++ P+ YT +L+AC+ L T E GKQVH Y R G
Sbjct: 290 MIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG 349
Query: 363 YDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFR 422
+D ++LVDMY KCG+++ A+ PDLVS +++ A +G E + +F
Sbjct: 350 FDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD 409
Query: 423 RILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRA 481
+L SG +PDH++F++ LSAC HAG ++ G EFF + + + + HYTC+VDLL+R+
Sbjct: 410 LLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARS 469
Query: 482 GELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541
G + I ++PM P +W ++LGGC ++GN++ + AA L ++EP N YV +A
Sbjct: 470 GRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMA 529
Query: 542 NLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
N++A AG+W + + R++M++ + K PG SW E + + H F A+D SH +I
Sbjct: 530 NIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQI 584
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 192/397 (48%), Gaps = 59/397 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCGSL DA+KVF MP RD SWN +V A GL+ EA + + M+ D+
Sbjct: 129 MYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDS-----Y 183
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQ-AEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
SW+A++ G+ + EEA+ + MQ PN T+S + A A ++ + GKE HG+
Sbjct: 184 SWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGH 243
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
I R G S+ + + L+D+Y +CG + A IF K K+ VS
Sbjct: 244 IVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVS----------------- 286
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
W SMI Y +S + E FS+F +L+ P +TF VL
Sbjct: 287 ------------------WTSMIDRYFKSSRWREGFSLFSELV-GSCERPNEYTFAGVLN 327
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD-----EIEN 294
ACAD+ + GK++H +G +F +LV+MY + ++ +A+ D ++ +
Sbjct: 328 ACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVS 387
Query: 295 IENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV 354
+L+G ++G +P+ A++ F +L PD T +LSAC+ +E+G +
Sbjct: 388 WTSLIGGCAQNG-QPD----EALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEF 442
Query: 355 HAYAI----RCGYDSDVHIGTALVDMYAKCGSLKHAR 387
Y+I R + SD + T LVD+ A+ G + +
Sbjct: 443 F-YSITEKHRLSHTSDHY--TCLVDLLARSGRFEQLK 476
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 43/298 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGKCG +D+A+ +F + E+D +V
Sbjct: 262 MYGKCGCIDEARNIFDKIVEKD------------------------------------VV 285
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+++I + ++ E + + PN T + VL ACA L LGK+ HGY+
Sbjct: 286 SWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYM 345
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
TR GF F + LVD+Y +CG++ SA + + VS ++I G +NG EA
Sbjct: 346 TRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEAL 405
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+ FD + G + +++ +++S L ++ F + + + TS + ++
Sbjct: 406 KYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDL 465
Query: 241 CADMNSLRKGK--EIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
A R G+ ++ ++ + ++ F+ +++ Y ++ A+ A E+ IE
Sbjct: 466 LA-----RSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIE 518
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/309 (21%), Positives = 128/309 (41%), Gaps = 21/309 (6%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG+++ AK V P+ D VSW S++ CA NG EAL+ + + P+ V
Sbjct: 363 MYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLK-SGTKPDHV 421
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRM-QAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
++ V+ T G E+ + + + + L + + ++ AR + ++
Sbjct: 422 TFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF---EQLKSV 478
Query: 120 ITRNGFMSNPFV---VNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNV 176
I+ + F+ V G Y A + K +N V+ T+ Y G
Sbjct: 479 ISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKW 538
Query: 177 AEARELFDQMEHLGV-QRGIISWNSM-------ISGYVDNSLYDEAFSMFRDLLMRDGIE 228
E ++ +M+ +GV +R SW + I+ + +Y++ R+L R ++
Sbjct: 539 EEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLREL--RKKMK 596
Query: 229 PTSFTFGSVLIACADMNSLRKGKEI--HALAIALGLQSDTFVGGALVEMYCRYQDLVAAQ 286
+ + L+ D+ +K + + H+ +A+ + G ++++ + V
Sbjct: 597 EEGYVPATSLVL-HDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCH 655
Query: 287 MAFDEIENI 295
A I NI
Sbjct: 656 GAIKFISNI 664
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 328 bits (841), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 195/572 (34%), Positives = 307/572 (53%), Gaps = 43/572 (7%)
Query: 27 NSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQ 86
N+++ G + +A L +M++ D +V+W+++I G+ QN +EA+ M
Sbjct: 324 NALIAMYTRCGKMPQAERILRQMNNAD-----VVTWNSLIKGYVQNLMYKEALEFFSDMI 378
Query: 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML 146
A G + + +++S++ A RL L G E H Y+ ++G+ SN V N L+D+Y +C
Sbjct: 379 AAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTC 438
Query: 147 SALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYV 206
+ F + K+ +ISW ++I+GY
Sbjct: 439 YMGRAFLRMHDKD-----------------------------------LISWTTVIAGYA 463
Query: 207 DNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT 266
N + EA +FRD+ + +E GS+L A + + S+ KEIH + GL DT
Sbjct: 464 QNDCHVEALELFRDV-AKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-DT 521
Query: 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSL 326
+ LV++Y + +++ A F+ I+ + + N A++LF M+
Sbjct: 522 VIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVET 581
Query: 327 DLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHA 386
L+ D + ILSA +SL+ + +G+++H Y +R G+ + I A+VDMYA CG L+ A
Sbjct: 582 GLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSA 641
Query: 387 RLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446
+ + RI L+ +M+ AY MHG GK + F ++ PDHISFL+ L AC HA
Sbjct: 642 KAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHA 701
Query: 447 GSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA 505
G + G F +M + Y+++P +HY C+VD+L RA + EA+EF+K + P + +W A
Sbjct: 702 GLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCA 761
Query: 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565
LL C SH E G+IAA RL+ELEP N GN V+++N+FA GRW+D+ + R KMK M
Sbjct: 762 LLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGM 821
Query: 566 HKSPGCSWIEDRDEIHKFRASDRSHDRSEEIY 597
K PGCSWIE ++HKF A D+SH S+EIY
Sbjct: 822 EKHPGCSWIEMDGKVHKFTARDKSHPESKEIY 853
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/517 (25%), Positives = 225/517 (43%), Gaps = 76/517 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGKCGSLDDA+KVF MP+R +WN++
Sbjct: 125 MYGKCGSLDDAEKVFDEMPDRTAFAWNTM------------------------------- 153
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
IG + NG A+ + + M+ EG+ + ++L ACA+L+ + G E H +
Sbjct: 154 -----IGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLL 208
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE-VSCNTIIVGYCENGNVAEA 179
+ G+ S F+VN LV +Y + D+ +A ++F F K + V N+I+ Y +G E
Sbjct: 209 VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLET 268
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
ELF +M H+ G P S+T S L
Sbjct: 269 LELFREM-HM-----------------------------------TGPAPNSYTIVSALT 292
Query: 240 ACADMNSLRKGKEIHALAIALGLQ-SDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENL 298
AC + + GKEIHA + S+ +V AL+ MY R + A+ ++ N + +
Sbjct: 293 ACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVV 352
Query: 299 LGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYA 358
G+ N+ A++ FS+M++ D ++ I++A L+ + G ++HAY
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYV 412
Query: 359 IRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGI 418
I+ G+DS++ +G L+DMY+KC + A+ R+ DL+S ++ YA + E +
Sbjct: 413 IKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEAL 472
Query: 419 AHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478
FR + D + S L A S+ E + + ++ +VD+
Sbjct: 473 ELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNE-LVDVY 531
Query: 479 SRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGN 515
+ +G A + I D V W +++ +GN
Sbjct: 532 GKCRNMGYATRVFESIK-GKDVVSWTSMISSSALNGN 567
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 172/334 (51%), Gaps = 8/334 (2%)
Query: 150 KIFSKF-SIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDN 208
+IF F S + + ++ Y + G++ +A ++FD+M R +WN+MI YV N
Sbjct: 105 RIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMP----DRTAFAWNTMIGAYVSN 160
Query: 209 SLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFV 268
A +++ ++ + +G+ +F ++L ACA + +R G E+H+L + LG S F+
Sbjct: 161 GEPASALALYWNMRV-EGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFI 219
Query: 269 GGALVEMYCRYQDLVAAQMAFDEI-ENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLD 327
ALV MY + DL AA+ FD E + +L + + + ++LF EM
Sbjct: 220 VNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTG 279
Query: 328 LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCG-YDSDVHIGTALVDMYAKCGSLKHA 386
P+ YT+ L+AC + + GK++HA ++ + S++++ AL+ MY +CG + A
Sbjct: 280 PAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQA 339
Query: 387 RLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446
++++ D+V+ N+++ Y + KE + F ++A+G + D +S S ++A
Sbjct: 340 ERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRL 399
Query: 447 GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480
++ G E + + +L+ ++D+ S+
Sbjct: 400 SNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 433
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 173/432 (40%), Gaps = 85/432 (19%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC + F M ++D +SW +V+ A N +EALE
Sbjct: 430 MYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALE---------------- 473
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNARTLSSVLPACARLQKLSLGKEFHGY 119
LFR A+ +E + L S+L A + L+ + + KE H +
Sbjct: 474 ---------------------LFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
I R G + + + N LVDVY +C +M A ++F K+ VS ++I NGN +EA
Sbjct: 513 ILRKGLL-DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEA 571
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
ELF +M + G+ S +L
Sbjct: 572 VELFRRM------------------------------------VETGLSADSVALLCILS 595
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL 299
A A +++L KG+EIH + G + + A+V+MY DL +A+ FD IE L
Sbjct: 596 AAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQ 655
Query: 300 GKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV----- 354
+ + + A++LF +M +++PD + +L ACS ++ G+
Sbjct: 656 YTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIME 715
Query: 355 HAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-PDLVSQNAMLTAYAMHGH 413
H Y + + V LVDM + + A K + T P A+L A H
Sbjct: 716 HEYELEPWPEHYV----CLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSE 771
Query: 414 GKEGIAHFRRIL 425
+ G +R+L
Sbjct: 772 KEIGEIAAQRLL 783
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 141/342 (41%), Gaps = 79/342 (23%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+YGKC ++ A +VF+ + +D VSW S++++ A NG NE+
Sbjct: 530 VYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNG----------------NES---- 569
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
EA+ + RM GL ++ L +L A A L L+ G+E H Y+
Sbjct: 570 ----------------EAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYL 613
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R GF + +VD+Y CGD+ SA +F + K + ++I Y +G A
Sbjct: 614 LRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAV 673
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFR-------------------DL 221
ELFD+M H V IS+ +++ L DE + D+
Sbjct: 674 ELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDM 733
Query: 222 LMRDG-------------IEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFV 268
L R EPT+ + ++L AC + KEI +A L+ +
Sbjct: 734 LGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSE----KEIGEIAAQRLLELEPKN 789
Query: 269 GGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPN 310
G LV + ++ A Q ++++E + KMK G E +
Sbjct: 790 PGNLVLV----SNVFAEQGRWNDVEKVR---AKMKASGMEKH 824
>sp|Q9LHN5|PP242_ARATH Putative pentatricopeptide repeat-containing protein At3g18840
OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1
Length = 678
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 201/640 (31%), Positives = 336/640 (52%), Gaps = 48/640 (7%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y K G L +A+ VF M ER+ SWN+V+ A V EA E E DN +L+
Sbjct: 32 LYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKFNNVKEARELFES----DNCERDLI 87
Query: 61 SWSAVIGGFTQ-NGYDEEAI---GMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF 116
+++ ++ GF + +G + EAI G + R + + + + T+++++ A+L + G++
Sbjct: 88 TYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFYGEQL 147
Query: 117 HGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK--NEVSCNTIIVGYCENG 174
HG + + G F V+ L+ +Y +CG IF+ ++ + V+ N +I YC G
Sbjct: 148 HGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAYCREG 207
Query: 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF 234
++ +A +F + L ISWN++I+GY N +EA M + +G++ +F
Sbjct: 208 DIDKALSVFWRNPELN---DTISWNTLIAGYAQNGYEEEALKMAVSM-EENGLKWDEHSF 263
Query: 235 GSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMA-----F 289
G+VL + + SL+ GKE+HA + G S+ FV +V++YC+ ++ A+ A F
Sbjct: 264 GAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGF 323
Query: 290 DEIENIENLL------GKMKE-----DGF-EPNVYTWNAMQLFSEMLS-----LDL---- 328
+ + +++ GKM E D E N+ W AM L L L+L
Sbjct: 324 GNLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAF 383
Query: 329 ------TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382
TPD + +L ACS A ME GK++H +++R G D + TA VDMY+KCG+
Sbjct: 384 IANETNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGN 443
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
+++A + D V NAM+ A HGH + HF + GF+PD I+F++ LSA
Sbjct: 444 VEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSA 503
Query: 443 CVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS 500
C H G + G ++F ++ Y++ P HYTCM+DL +A L +A E ++ I + D+
Sbjct: 504 CRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDA 563
Query: 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560
V+ GA L C + N E + ++L+ +E +N Y+ +AN +A +GRW ++ R R +M
Sbjct: 564 VILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQIANAYASSGRWDEMQRIRHQM 623
Query: 561 KDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTII 600
+ + + GCSW + H F +SD SH +E IY ++
Sbjct: 624 RGKELEIFSGCSWANIDKQFHMFTSSDISHYETEAIYAML 663
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/452 (24%), Positives = 190/452 (42%), Gaps = 73/452 (16%)
Query: 133 NGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ 192
N LV++Y + G + A +F + +N S N +I Y + NV EARELF E +
Sbjct: 27 NQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKFNNVKEARELF---ESDNCE 83
Query: 193 RGIISWNSMISGYVD-NSLYDEAFSMFRDLLM--RDGIEPTSFTFGSVLIACADMNSLRK 249
R +I++N+++SG+ + EA MF ++ +D I FT +++ A + ++
Sbjct: 84 RDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFY 143
Query: 250 GKEIHALAIALGLQSDTFVGGALVEM---------------------------------Y 276
G+++H + + G F +L+ M Y
Sbjct: 144 GEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAY 203
Query: 277 CRYQDLVAAQMAFDEIENIENLLG-KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTV 335
CR D+ A F + + + G+ N Y A+++ M L D ++
Sbjct: 204 CREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSF 263
Query: 336 GIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST 395
G +L+ SSL +++ GK+VHA ++ G S+ + + +VD+Y KCG++K+A A+
Sbjct: 264 GAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGF 323
Query: 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRI--------------------------LASGF 429
+L S ++M+ Y+ G E F + LA F
Sbjct: 324 GNLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAF 383
Query: 430 ------RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE 483
PD + +S L AC ++ G E + K T VD+ S+ G
Sbjct: 384 IANETNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGN 443
Query: 484 LGEAYEFIKKIPMAPDSVMWGALLGGCVSHGN 515
+ E E I D+VM+ A++ GC HG+
Sbjct: 444 V-EYAERIFDSSFERDTVMYNAMIAGCAHHGH 474
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 355 HAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHG 414
H +I+ G LV++Y+K G L+ AR + + ++ S NA++ AY +
Sbjct: 11 HIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKFNNV 70
Query: 415 KEG 417
KE
Sbjct: 71 KEA 73
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/542 (32%), Positives = 294/542 (54%), Gaps = 39/542 (7%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL-QKLSLGKEF 116
+L+SW++VI G QNG + EA+ + ++ GL+P+ T++SVL A + L + LSL K+
Sbjct: 380 DLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQV 439
Query: 117 HGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNV 176
H + + +S+ FV L+D Y R N +
Sbjct: 440 HVHAIKINNVSDSFVSTALIDAYSR-------------------------------NRCM 468
Query: 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236
EA LF++ +++WN+M++GY + + +F L+ + G FT +
Sbjct: 469 KEAEILFERHNF-----DLVAWNAMMAGYTQSHDGHKTLKLFA-LMHKQGERSDDFTLAT 522
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
V C + ++ +GK++HA AI G D +V +++MY + D+ AAQ AFD I +
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 582
Query: 297 NLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356
++ G N A +FS+M + + PD +T+ + A S L +E+G+Q+HA
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 642
Query: 357 YAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKE 416
A++ +D +GT+LVDMYAKCGS+ A +KRI ++ + NAML A HG GKE
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702
Query: 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMV 475
+ F+++ + G +PD ++F+ LSAC H+G + + M Y +KP ++HY+C+
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLA 762
Query: 476 DLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535
D L RAG + +A I+ + M + M+ LL C G+ E G+ A +L+ELEP ++
Sbjct: 763 DALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 822
Query: 536 NYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEE 595
YV+L+N++A A +W ++ R MK ++ K PG SWIE +++IH F DRS+ ++E
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTEL 882
Query: 596 IY 597
IY
Sbjct: 883 IY 884
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 155/581 (26%), Positives = 252/581 (43%), Gaps = 95/581 (16%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCGSL A++VF MP+RD VSWNS++ A A ++ EC+ ++N
Sbjct: 83 MYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA------QSSECV-----VEN------ 125
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSLGKEFHGY 119
Q + +LFR+ + + +R TLS +L C + + FHGY
Sbjct: 126 ---------IQQAF------LLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGY 170
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+ G + FV LV++Y + G + +F + ++ V N ++ Y E G EA
Sbjct: 171 ACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA 230
Query: 180 RELFDQMEHLGVQRG----------------------------------IISWNSMISGY 205
+L G+ II N +S Y
Sbjct: 231 IDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEY 290
Query: 206 VDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSD 265
+ + Y F D++ D +E TF +L ++SL G+++H +A+ LGL
Sbjct: 291 LHSGQYSALLKCFADMVESD-VECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM 349
Query: 266 TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLS 325
V +L+ MYC+ + A+ FD + + + G N A+ LF ++L
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409
Query: 326 LDLTPDIYTVGIILSACSSLAT-MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLK 384
L PD YT+ +L A SSL + KQVH +AI+ SD + TAL+D Y++ +K
Sbjct: 410 CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMK 469
Query: 385 HARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC- 443
A + ++R DLV+ NAM+ Y G + + F + G R D + + C
Sbjct: 470 EAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCG 528
Query: 444 ----------VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKK 493
VHA +IK+G YD+ L + ++D+ + G++ A
Sbjct: 529 FLFAINQGKQVHAYAIKSG---------YDL--DLWVSSGILDMYVKCGDMSAAQFAFDS 577
Query: 494 IPMAPDSVMWGALLGGCVSHGNLE--FGQIAADRLIELEPN 532
IP+ PD V W ++ GC+ +G E F + RL+ + P+
Sbjct: 578 IPV-PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPD 617
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%)
Query: 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKE 115
P+ V+W+ +I G +NG +E A + +M+ G+ P+ T++++ A + L L G++
Sbjct: 580 VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ 639
Query: 116 FHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGN 175
H + ++PFV LVD+Y +CG + A +F + + N + N ++VG ++G
Sbjct: 640 IHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 699
Query: 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP 229
E +LF QM+ LG++ +++ ++S + L EA+ R + GI+P
Sbjct: 700 GKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKP 753
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/407 (20%), Positives = 155/407 (38%), Gaps = 68/407 (16%)
Query: 110 LSLGKEFHGYITRNGFMSNP--FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTII 167
L LGK H I F NP F++N L+ +Y +CG + A ++F K ++ VS N+I+
Sbjct: 55 LMLGKCTHARILT--FEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 168 VGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGI 227
Y ++ V+N +AF +FR +L +D +
Sbjct: 113 AAYAQSSECV----------------------------VEN--IQQAFLLFR-ILRQDVV 141
Query: 228 EPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQM 287
+ T +L C + + H A +GL D FV GALV +Y ++ + ++
Sbjct: 142 YTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKV 201
Query: 288 AFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347
F+E+ + +L + + + A+ L S S L P+ T+ ++
Sbjct: 202 LFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLL--------- 252
Query: 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTA 407
A G DSD G +K S +++ +N L+
Sbjct: 253 ----------ARISGDDSDA-------------GQVKSFANGNDASSVSEIIFRNKGLSE 289
Query: 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS 467
Y G + F ++ S D ++F+ L+ V S+ G + + +
Sbjct: 290 YLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM 349
Query: 468 LKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514
L ++++ + + G A + D + W +++ G +G
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMS-ERDLISWNSVIAGIAQNG 395
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCGS+DDA +FK + + +WN+++ A +G E L+ ++M SL + P+ V
Sbjct: 662 MYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIK-PDKV 720
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACAR 106
++ V+ + +G EA + M + G++P S + A R
Sbjct: 721 TFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGR 767
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/602 (30%), Positives = 319/602 (52%), Gaps = 29/602 (4%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y + G + A+K+F MPERD VSWN ++ N + +A E E M D + S
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERD-----VCS 159
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W+ ++ G+ QNG ++A + RM E N + +++L A + K+
Sbjct: 160 WNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEACMLFKSRE 215
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
+S ++ G V + ++ A + F ++++ VS NTII GY ++G + EAR+
Sbjct: 216 NWALVSWNCLLGGFVKKKK----IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
LFD+ + + +W +M+SGY+ N + +EA +F + R+ + ++ ++L
Sbjct: 272 LFDE----SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEV-----SWNAMLAGY 322
Query: 242 ADMNSLRKGKEIHALAIALGLQS-DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
+ KE+ + + + +T + G Y + + A+ FD++ + +
Sbjct: 323 VQGERMEMAKELFDVMPCRNVSTWNTMITG-----YAQCGKISEAKNLFDKMPKRDPVSW 377
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360
G+ + +++ A++LF +M + + LS C+ + +E GKQ+H ++
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437
Query: 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH 420
GY++ +G AL+ MY KCGS++ A +K ++ D+VS N M+ Y+ HG G+ +
Sbjct: 438 GGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRF 497
Query: 421 FRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLS 479
F + G +PD + ++ LSAC H G + G ++F M Y V P+ +HY CMVDLL
Sbjct: 498 FESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLG 557
Query: 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM 539
RAG L +A+ +K +P PD+ +WG LLG HGN E + AAD++ +EP N+G YV+
Sbjct: 558 RAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVL 617
Query: 540 LANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTI 599
L+NL+A +GRW D+ + R +M+D+ + K PG SWIE +++ H F D H +EI+
Sbjct: 618 LSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAF 677
Query: 600 ID 601
++
Sbjct: 678 LE 679
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 105/440 (23%), Positives = 183/440 (41%), Gaps = 63/440 (14%)
Query: 133 NGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ 192
N + Y R G AL++F + + VS N +I GY NG AR+LFD+M +
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP----E 123
Query: 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD-----MNSL 247
R ++SWN MI GYV N +A +F + RD + G C D + +
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM 183
Query: 248 RKGKEIHALAIALGLQSDTFV-----------GGALVEMYC------RYQDLVAAQMAFD 290
+ ++ A+ ++ + ALV C + + +V A+ FD
Sbjct: 184 PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFD 243
Query: 291 EIENIENLL------------GKMKE------DGFEPNVYTWNAM-------QLFSEMLS 325
+ N+ +++ GK+ E + +V+TW AM ++ E
Sbjct: 244 SM-NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARE 302
Query: 326 L-DLTPDIYTV--GIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382
L D P+ V +L+ ME K++ + C +V ++ YA+CG
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFD-VMPC---RNVSTWNTMITGYAQCGK 358
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442
+ A+ + ++ D VS AM+ Y+ GH E + F ++ G R + SF SALS
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418
Query: 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVM 502
C +++ G + + + ++ + + G + EA + K++ D V
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA-GKDIVS 477
Query: 503 WGALLGGCVSHGNLEFGQIA 522
W ++ G HG FG++A
Sbjct: 478 WNTMIAGYSRHG---FGEVA 494
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 38/188 (20%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCGS+++A +FK M +D VSWN+
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNT-------------------------------- 480
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+I G++++G+ E A+ M+ EGL+P+ T+ +VL AC+ + G+++ +
Sbjct: 481 ----MIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTM 536
Query: 121 TRN-GFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCE-NGNVAE 178
T++ G M N +VD+ R G + A + + + + ++G +GN
Sbjct: 537 TQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTEL 596
Query: 179 ARELFDQM 186
A D++
Sbjct: 597 AETAADKI 604
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 10/159 (6%)
Query: 359 IRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGI 418
++CG DSD+ + Y + G A +KR+ VS N M++ Y +G
Sbjct: 57 LKCG-DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGE----F 111
Query: 419 AHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478
R++ D +S+ + V ++ E F++M DV + M+
Sbjct: 112 ELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCS----WNTMLSGY 167
Query: 479 SRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517
++ G + +A ++P D V W ALL V + +E
Sbjct: 168 AQNGCVDDARSVFDRMPEKND-VSWNALLSAYVQNSKME 205
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 325 bits (833), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 181/602 (30%), Positives = 317/602 (52%), Gaps = 59/602 (9%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y G +A+++F M ER+ VSWN +V+ N +++EA E M N+VS
Sbjct: 58 YFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPE-----RNVVS 112
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W+A++ G+ Q G EA + +RM ++S F G I
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPER-------------------NEVSWTVMFGGLID 153
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
+G +D R+ DM+ +K+ V+ +I G C G V EAR
Sbjct: 154 -----------DGRIDKARKLYDMMP---------VKDVVASTNMIGGLCREGRVDEARL 193
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
+FD+M +R +++W +MI+GY N+ D A +F + + + TS G L
Sbjct: 194 IFDEMR----ERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTL--S 247
Query: 242 ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGK 301
+ + E+ + + A++ + ++ A+ FD +E+ +N +
Sbjct: 248 GRIEDAEEFFEVMPMKPVIACN-------AMIVGFGEVGEISKARRVFDLMEDRDNATWR 300
Query: 302 MKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC 361
+E + A+ LF++M + P ++ ILS C++LA+++ G+QVHA+ +RC
Sbjct: 301 GMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360
Query: 362 GYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHF 421
+D DV++ + L+ MY KCG L A+L + R S+ D++ N++++ YA HG G+E + F
Sbjct: 361 QFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIF 420
Query: 422 RRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSR 480
+ +SG P+ ++ ++ L+AC +AG ++ G E F+ M + + V P+++HY+C VD+L R
Sbjct: 421 HEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGR 480
Query: 481 AGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVML 540
AG++ +A E I+ + + PD+ +WGALLG C +H L+ ++AA +L E EP+N G YV+L
Sbjct: 481 AGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLL 540
Query: 541 ANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKF-RASDRSHDRSEEIYTI 599
+++ A +W D+A R+ M+ + K PGCSWIE ++H F R ++H I +
Sbjct: 541 SSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMM 600
Query: 600 ID 601
++
Sbjct: 601 LE 602
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 170/464 (36%), Gaps = 109/464 (23%)
Query: 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGV---------------------------QR 193
V+C+ I G + EAR+ FD ++ + +R
Sbjct: 18 VNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER 77
Query: 194 GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG------------------ 235
++SWN ++SGY+ N + EA ++F + R+ + T+ G
Sbjct: 78 NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP 137
Query: 236 -------SVLI-ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQM 287
+V+ D + K ++++ + + + T + G L CR + A++
Sbjct: 138 ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGL----CREGRVDEARL 193
Query: 288 AFDEIENIENLLGKMKEDGFEPNVYTWNAMQL-FSEMLSLDLTPDIYTVGIILSACSSLA 346
FDE+ E NV TW M + + +D+ ++ V
Sbjct: 194 IFDEMR--------------ERNVVTWTTMITGYRQNNRVDVARKLFEV----------- 228
Query: 347 TMERGKQVHAYAIRCGYDSDVHIG-----------------TALVDMYAKCGSLKHARLA 389
M +V ++ GY I A++ + + G + AR
Sbjct: 229 -MPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRV 287
Query: 390 YKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449
+ + D + M+ AY G E + F ++ G RP S +S LS C S+
Sbjct: 288 FDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASL 347
Query: 450 KTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509
+ G + + + + ++ + + GEL +A + + D +MW +++ G
Sbjct: 348 QYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFS-SKDIIMWNSIISG 406
Query: 510 CVSHGNLEFGQIAADRLIELEPNNT-GNYVMLANLF---AYAGR 549
SHG G+ A E+ + T N V L + +YAG+
Sbjct: 407 YASHG---LGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGK 447
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 44/192 (22%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG L AK VF +D + WNS+++ A++GL EAL+ M S
Sbjct: 375 MYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPS--------- 425
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
G PN TL ++L AC+ KL G E +
Sbjct: 426 ---------------------------SGTMPNKVTLIAILTACSYAGKLEEGLEIFESM 458
Query: 121 TRNGFMSNPFV--VNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG---N 175
+ F P V + VD+ R G + A+++ +IK + + ++G C+ +
Sbjct: 459 -ESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLD 517
Query: 176 VAE--ARELFDQ 185
+AE A++LF+
Sbjct: 518 LAEVAAKKLFEN 529
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 325 bits (832), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 181/521 (34%), Positives = 275/521 (52%), Gaps = 41/521 (7%)
Query: 81 MLFRMQAEGLE-----PNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL 135
+L R + LE + R +++L C + L G+ H +I ++ F + + N L
Sbjct: 42 LLLRTSSNDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTL 101
Query: 136 VDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI 195
+++Y +CG + EAR++F++M QR
Sbjct: 102 LNMYAKCGSL-------------------------------EEARKVFEKMP----QRDF 126
Query: 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHA 255
++W ++ISGY + +A F +L R G P FT SV+ A A G ++H
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQML-RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185
Query: 256 LAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315
+ G S+ VG AL+++Y RY + AQ+ FD +E+ ++ G T
Sbjct: 186 FCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEK 245
Query: 316 AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375
A++LF ML P ++ + ACSS +E+GK VHAY I+ G G L+D
Sbjct: 246 ALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLD 305
Query: 376 MYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHIS 435
MYAK GS+ AR + R++ D+VS N++LTAYA HG GKE + F + G RP+ IS
Sbjct: 306 MYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEIS 365
Query: 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495
FLS L+AC H+G + G +++LM + P HY +VDLL RAG+L A FI+++P
Sbjct: 366 FLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425
Query: 496 MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555
+ P + +W ALL C H N E G AA+ + EL+P++ G +V+L N++A GRW+D AR
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485
Query: 556 TRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
R+KMK+ + K P CSW+E + IH F A+D H + EEI
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 526
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/423 (26%), Positives = 176/423 (41%), Gaps = 83/423 (19%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCGSL++A+KVF+ MP+RD V
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRD------------------------------------FV 127
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+W+ +I G++Q+ +A+ +M G PN TLSSV+ A A ++ G + HG+
Sbjct: 128 TWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFC 187
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ GF SN V + L+D+Y R G M A +F +N+VS N +I G+ +A
Sbjct: 188 VKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKAL 247
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
ELF M +RDG P+ F++ S+ A
Sbjct: 248 ELFQGM------------------------------------LRDGFRPSHFSYASLFGA 271
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD-----EIENI 295
C+ L +GK +HA I G + F G L++MY + + A+ FD ++ +
Sbjct: 272 CSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSW 331
Query: 296 ENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVH 355
+LL + GF W F EM + + P+ + +L+ACS ++ G +
Sbjct: 332 NSLLTAYAQHGFGKEAVWW-----FEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYY 386
Query: 356 AYAIRCGYDSDVHIGTALVDMYAKCGSLKHA-RLAYKRISTPDLVSQNAMLTAYAMHGHG 414
+ G + +VD+ + G L A R + P A+L A MH +
Sbjct: 387 ELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNT 446
Query: 415 KEG 417
+ G
Sbjct: 447 ELG 449
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 191/601 (31%), Positives = 302/601 (50%), Gaps = 78/601 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY K +++ +VF MPERD +
Sbjct: 151 MYAKFNLFENSLQVFDEMPERD------------------------------------VA 174
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
SW+ VI F Q+G E+A+ + RM++ G EPN+ +L+ + AC+RL L GKE H
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKC 234
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ GF + +V + LVD+Y +C D L AR
Sbjct: 235 VKKGFELDEYVNSALVDMYGKC-DCLEV------------------------------AR 263
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
E+F +M ++ +++WNSMI GYV + +++ +G P+ T S+L+A
Sbjct: 264 EVFQKMP----RKSLVAWNSMIKGYVAKGDSKSCVEILNRMII-EGTRPSQTTLTSILMA 318
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIE-NIENLL 299
C+ +L GK IH I + +D +V +L+++Y + + A+ F + + ++
Sbjct: 319 CSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESW 378
Query: 300 GKMKEDGFEPNVYTW-NAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYA 358
M +V W A++++ +M+S+ + PD+ T +L ACS LA +E+GKQ+H
Sbjct: 379 NVMISSYI--SVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSI 436
Query: 359 IRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGI 418
++D + +AL+DMY+KCG+ K A + I D+VS M++AY HG +E +
Sbjct: 437 SESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREAL 496
Query: 419 AHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDL 477
F + G +PD ++ L+ LSAC HAG I G +FF M + Y ++P ++HY+CM+D+
Sbjct: 497 YQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDI 556
Query: 478 LSRAGELGEAYEFIKKIPMAPDSV-MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536
L RAG L EAYE I++ P D+ + L C H G A L+E P++
Sbjct: 557 LGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDAST 616
Query: 537 YVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
Y++L NL+A W R R KMK+ + K PGCSWIE D++ F A DRSH R+E +
Sbjct: 617 YMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENV 676
Query: 597 Y 597
Y
Sbjct: 677 Y 677
Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/434 (25%), Positives = 182/434 (41%), Gaps = 64/434 (14%)
Query: 97 LSSVLPACARLQK-LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155
L S+L C K L K H I G + + L++VY C D SA +F F
Sbjct: 6 LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 65
Query: 156 SIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215
I+++ + WNS++SGY NS++ +
Sbjct: 66 DIRSD----------------------------------VYIWNSLMSGYSKNSMFHDTL 91
Query: 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEM 275
+F+ LL P SFTF +V+ A + G+ IH L + G D V +LV M
Sbjct: 92 EVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGM 151
Query: 276 YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN--------------AMQLFS 321
Y ++ + FDE+ E +V +WN A++LF
Sbjct: 152 YAKFNLFENSLQVFDEMP--------------ERDVASWNTVISCFYQSGEAEKALELFG 197
Query: 322 EMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG 381
M S P+ ++ + +SACS L +ERGK++H ++ G++ D ++ +ALVDMY KC
Sbjct: 198 RMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCD 257
Query: 382 SLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALS 441
L+ AR ++++ LV+ N+M+ Y G K + R++ G RP + S L
Sbjct: 258 CLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILM 317
Query: 442 ACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV 501
AC + ++ G + V + ++DL + GE A K +
Sbjct: 318 ACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSK-TQKDVAE 376
Query: 502 MWGALLGGCVSHGN 515
W ++ +S GN
Sbjct: 377 SWNVMISSYISVGN 390
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 322 bits (825), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 177/517 (34%), Positives = 279/517 (53%), Gaps = 21/517 (4%)
Query: 93 NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIF 152
N + + +C Q L GK+ H + +GF S+ F+ N L+ +Y + GD SA+ ++
Sbjct: 43 NTSLFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVY 102
Query: 153 SKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYD 212
+ KN +S N +I GY G++ AR++FD+M R + +WN+MI+G + +
Sbjct: 103 GRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMP----DRKLTTWNAMIAGLIQFEFNE 158
Query: 213 EAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGAL 272
E S+FR++ G P +T GSV A + S+ G++IH I GL+ D V +L
Sbjct: 159 EGLSLFREM-HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSL 217
Query: 273 VEMYCRYQDLVAAQMAFDEIENIENL-------LGKMKEDGFEPNVYTWNAMQLFSEMLS 325
MY R L ++ + + NL +G + E +Y + M++
Sbjct: 218 AHMYMRNGKLQDGEIVIRSMP-VRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISG---- 272
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKH 385
P+ T +LS+CS LA +G+Q+HA AI+ G S V + ++L+ MY+KCG L
Sbjct: 273 --CRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGD 330
Query: 386 ARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRIL-ASGFRPDHISFLSALSACV 444
A A+ D V ++M++AY HG G E I F + + + ++FL+ L AC
Sbjct: 331 AAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS 390
Query: 445 HAGSIKTGSEFFDLMA-YYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMW 503
H+G G E FD+M Y KP LKHYTC+VDLL RAG L +A I+ +P+ D V+W
Sbjct: 391 HSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIW 450
Query: 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563
LL C H N E Q +++++PN++ YV+LAN+ A A RW D++ R+ M+D+
Sbjct: 451 KTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDK 510
Query: 564 RMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTII 600
+ K G SW E + E+H+F+ DRS +S+EIY+ +
Sbjct: 511 NVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYL 547
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 184/429 (42%), Gaps = 46/429 (10%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY K G A V+ M +++ +S N ++ G ++ A + + M L
Sbjct: 88 MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPD-----RKLT 142
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+W+A+I G Q ++EE + + M G P+ TL SV A L+ +S+G++ HGY
Sbjct: 143 TWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYT 202
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ G + V + L +Y R G + + ++N V+ NT+I+G +NG
Sbjct: 203 IKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVL 262
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
L+ M+ IS G P TF +VL +
Sbjct: 263 YLYKMMK--------IS----------------------------GCRPNKITFVTVLSS 286
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
C+D+ +G++IHA AI +G S V +L+ MY + L A AF E E+ + ++
Sbjct: 287 CSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMW 346
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGI--ILSACSSLATMERGKQVHAYA 358
+ + A++LF+ M +I V +L ACS ++G ++
Sbjct: 347 SSMISAYGFHGQGDEAIELFNTMAE-QTNMEINEVAFLNLLYACSHSGLKDKGLELFDMM 405
Query: 359 I-RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVSQNAMLTAYAMHGHGKE 416
+ + G+ + T +VD+ + G L A + + D+V +L+A +H + +
Sbjct: 406 VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEM 465
Query: 417 GIAHFRRIL 425
F+ IL
Sbjct: 466 AQRVFKEIL 474
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 117/240 (48%), Gaps = 4/240 (1%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFH 117
NLV+W+ +I G QNG E + + M+ G PN T +VL +C+ L G++ H
Sbjct: 241 NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIH 300
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
+ G S VV+ L+ +Y +CG + A K FS+ ++EV +++I Y +G
Sbjct: 301 AEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGD 360
Query: 178 EARELFDQM-EHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236
EA ELF+ M E ++ +++ +++ + L D+ +F ++ + G +P +
Sbjct: 361 EAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTC 420
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
V+ L + + A+ ++ +++D + L+ +++ AQ F EI I+
Sbjct: 421 VVDLLGRAGCLDQAE---AIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 477
>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490
OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
Length = 681
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 183/550 (33%), Positives = 288/550 (52%), Gaps = 15/550 (2%)
Query: 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
+ W+ +I + +N EE I RM ++G+ P+A T SVL AC ++ G+ HG
Sbjct: 110 LPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGS 169
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
I + + S+ +V N L+ +Y+R +M A ++F + ++ VS N +I Y G +EA
Sbjct: 170 IEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEA 229
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD---GIEPTSFTFGS 236
ELFD+M GV+ +I+WN + G + Y A + MR+ ++P + G
Sbjct: 230 FELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISR--MRNFPTSLDPVAMIIG- 286
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
L AC+ + ++R GKEIH LAI V L+ MY + +DL A + F + E E
Sbjct: 287 -LKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTE--E 343
Query: 297 NLLGKMKE--DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV 354
N L G+ + A L EML P+ T+ IL C+ +A ++ GK+
Sbjct: 344 NSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEF 403
Query: 355 HAYAIR--CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHG 412
H Y +R C D + + +LVD+YAK G + A+ +S D V+ +++ Y G
Sbjct: 404 HCYILRRKCFKDYTM-LWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQG 462
Query: 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHY 471
G +A F+ + SG +PDH++ ++ LSAC H+ + G F + Y ++P L+H+
Sbjct: 463 EGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHF 522
Query: 472 TCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531
+CMVDL RAG L +A + I +P P W LL C HGN + G+ AA++L+E++P
Sbjct: 523 SCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKP 582
Query: 532 NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHD 591
N G YV++AN++A AG WS LA R M+D + K PGC+WI+ F D S
Sbjct: 583 ENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSP 642
Query: 592 RSEEIYTIID 601
+ Y ++D
Sbjct: 643 EACNTYPLLD 652
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/423 (26%), Positives = 192/423 (45%), Gaps = 46/423 (10%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY + ++ A+++F M ERD VSWN+V+ A+ G+ EA E ++M E +++
Sbjct: 188 MYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEV-SVI 246
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQ--AEGLEPNARTLSSVLPACARLQKLSLGKEFHG 118
+W+ + GG Q G A+G++ RM+ L+P A + L AC+ + + LGKE HG
Sbjct: 247 TWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIG--LKACSLIGAIRLGKEIHG 304
Query: 119 YITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAE 178
+ + V N L+ +Y +C D+ AL +F + + + N+II GY + E
Sbjct: 305 LAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEE 364
Query: 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVL 238
A L +M + G +P S T S+L
Sbjct: 365 ASHLLREM------------------------------------LVAGFQPNSITLASIL 388
Query: 239 IACADMNSLRKGKEIHALAIALGLQSD-TFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
CA + +L+ GKE H + D T + +LV++Y + +VAA+ D + +
Sbjct: 389 PLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDE 448
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
+ DG+ A+ LF EM + PD TV +LSACS + G+++
Sbjct: 449 VTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFM- 507
Query: 358 AIRCGYDSD--VHIGTALVDMYAKCGSLKHAR-LAYKRISTPDLVSQNAMLTAYAMHGHG 414
++C Y + + +VD+Y + G L A+ + + P + +L A +HG+
Sbjct: 508 KMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNT 567
Query: 415 KEG 417
+ G
Sbjct: 568 QIG 570
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%)
Query: 235 GSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294
S+L AC D+ + G ++HA I+ G++ + + LV Y + AQ + +
Sbjct: 47 ASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDI 106
Query: 295 IENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV 354
+ L + + N + + M+S + PD +T +L AC + G+ V
Sbjct: 107 LHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVV 166
Query: 355 HAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHG 414
H Y S +++ AL+ MY + ++ AR + R+ D VS NA++ YA G
Sbjct: 167 HGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMW 226
Query: 415 KEGIAHFRRILASGFRPDHISFLSALSACVHAGS 448
E F ++ SG I++ C+ G+
Sbjct: 227 SEAFELFDKMWFSGVEVSVITWNIISGGCLQTGN 260
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 5/224 (2%)
Query: 293 ENIENLLGKMKEDGFEPNVY-TWNAMQL-FSEMLSLDLTPDIYTVGIILSACSSLATMER 350
E++ LG + G + + T++ ++L S +S DL +++ +LSAC +
Sbjct: 4 ESLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLV--LHSAASLLSACVDVRAFLA 61
Query: 351 GKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAM 410
G QVHA+ I G + + LV Y+ A+ + + N ++ +YA
Sbjct: 62 GVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAK 121
Query: 411 HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKH 470
+ +E IA ++R+++ G RPD ++ S L AC + G + K SL
Sbjct: 122 NELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYV 181
Query: 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514
++ + R +G A ++ D+V W A++ S G
Sbjct: 182 CNALISMYKRFRNMGIARRLFDRM-FERDAVSWNAVINCYASEG 224
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 183/599 (30%), Positives = 310/599 (51%), Gaps = 72/599 (12%)
Query: 19 PERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78
P++ + +++ + GLV EA + M D +V+W+A+I G+ + Y+ A
Sbjct: 41 PKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRD-----VVAWTAMITGYASSNYNARA 95
Query: 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV 138
M +G PN TLSSVL +C ++ L+ G HG + + G + +V N ++++
Sbjct: 96 WECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNM 155
Query: 139 YRRCG-DMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIIS 197
Y C M +A IF +KN+V+ T+I G+ HLG G
Sbjct: 156 YATCSVTMEAACLIFRDIKVKNDVTWTTLITGFT----------------HLGDGIG--- 196
Query: 198 WNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALA 257
M++ +L+ + E T + + A A ++S+ GK+IHA
Sbjct: 197 ----------------GLKMYKQMLLENA-EVTPYCITIAVRASASIDSVTTGKQIHASV 239
Query: 258 IALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN-- 315
I G QS+ V +++++YCR L A+ F E+E + ++ TWN
Sbjct: 240 IKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEME--------------DKDLITWNTL 285
Query: 316 -----------AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYD 364
A+ +F S P+ YT +++AC+++A + G+Q+H R G++
Sbjct: 286 ISELERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFN 345
Query: 365 SDVHIGTALVDMYAKCGSLKHARLAYKRI-STPDLVSQNAMLTAYAMHGHGKEGIAHFRR 423
+V + AL+DMYAKCG++ ++ + I +LVS +M+ Y HG+G E + F +
Sbjct: 346 KNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDK 405
Query: 424 ILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLLSRAG 482
+++SG RPD I F++ LSAC HAG ++ G ++F++M + Y + P Y C+VDLL RAG
Sbjct: 406 MVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAG 465
Query: 483 ELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG-NLEFGQIAADRLIELEPNNTGNYVMLA 541
++GEAYE ++++P PD WGA+LG C +H N ++AA +++EL+P G YVML+
Sbjct: 466 KIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLS 525
Query: 542 NLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTII 600
++A G+W D AR R+ M+ K G SWI +++ F SD+ + +Y+++
Sbjct: 526 YIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVL 584
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 318 bits (815), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 167/546 (30%), Positives = 297/546 (54%), Gaps = 41/546 (7%)
Query: 54 NETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLG 113
E ++V+W+++I G+ NG D EA+GM + M+ + + + +SV+ CA L++L
Sbjct: 255 TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFT 314
Query: 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCEN 173
++ H + + GF+ + + L+ Y +C ML AL++F E+ C
Sbjct: 315 EQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLF------KEIGCV--------- 359
Query: 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233
GNV +SW +MISG++ N +EA +F ++ R G+ P FT
Sbjct: 360 GNV-------------------VSWTAMISGFLQNDGKEEAVDLFSEM-KRKGVRPNEFT 399
Query: 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIE 293
+ +L A ++ E+HA + + + VG AL++ Y + + A F I+
Sbjct: 400 YSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGID 455
Query: 294 NIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSL-ATMERGK 352
+ + + G+ T A+++F E+ + P+ +T IL+ C++ A+M +GK
Sbjct: 456 DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGK 515
Query: 353 QVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHG 412
Q H +AI+ DS + + +AL+ MYAK G+++ A +KR DLVS N+M++ YA HG
Sbjct: 516 QFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHG 575
Query: 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKHY 471
+ + F+ + + D ++F+ +AC HAG ++ G ++FD+M + P+ +H
Sbjct: 576 QAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN 635
Query: 472 TCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531
+CMVDL SRAG+L +A + I+ +P S +W +L C H E G++AA+++I ++P
Sbjct: 636 SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP 695
Query: 532 NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHD 591
++ YV+L+N++A +G W + A+ R+ M +R + K PG SWIE +++ + F A DRSH
Sbjct: 696 EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHP 755
Query: 592 RSEEIY 597
++IY
Sbjct: 756 LKDQIY 761
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/511 (22%), Positives = 215/511 (42%), Gaps = 71/511 (13%)
Query: 35 ANGLVLEALECLERMSS--------LDNETP--NLVSWSAVIGGFTQNGYDEEAIGMLFR 84
ANG+ + C +SS L +++P + S+ +++ GF+++G +EA +
Sbjct: 24 ANGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLN 83
Query: 85 MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144
+ G+E + SSVL A L G++ H + GF+ + V LVD Y + +
Sbjct: 84 IHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSN 143
Query: 145 MLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISG 204
K+F + +N V+ T+I GY N E LF +M++
Sbjct: 144 FKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN---------------- 187
Query: 205 YVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQS 264
+G +P SFTF + L A+ +G ++H + + GL
Sbjct: 188 --------------------EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDK 227
Query: 265 DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEML 324
V +L+ +Y + ++ A++ FD+ E + G+ N A+ +F M
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 287
Query: 325 SLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLK 384
+ + ++ C++L + +Q+H ++ G+ D +I TAL+ Y+KC ++
Sbjct: 288 LNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAML 347
Query: 385 HARLAYKRIS-TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443
A +K I ++VS AM++ + + +E + F + G RP+ ++ L+A
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407
Query: 444 -------VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPM 496
VHA +KT E + T ++D + G++ EA + I
Sbjct: 408 PVISPSEVHAQVVKTNYERSSTVG-----------TALLDAYVKLGKVEEAAKVFSGID- 455
Query: 497 APDSVMWGALLGGCVSHGNLE-----FGQIA 522
D V W A+L G G E FG++
Sbjct: 456 DKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY K G+++ A++VFK E+D VSWNS+++ A +G ++AL+ + M + V
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG-V 597
Query: 61 SWSAVIGGFTQNGYDEE 77
++ V T G EE
Sbjct: 598 TFIGVFAACTHAGLVEE 614
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 318 bits (814), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 184/568 (32%), Positives = 297/568 (52%), Gaps = 45/568 (7%)
Query: 37 GLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRM-QAEGLEPNAR 95
G ++EAL + + E P++V+WS+++ GF +NG +A+ RM A + P+
Sbjct: 110 GRMIEALRMFDEL-----EKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRV 164
Query: 96 TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155
TL +++ AC +L LG+ HG++ R GF ++ +VN L++ Y + A+ +F
Sbjct: 165 TLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMI 224
Query: 156 SIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215
+ ++ +ISW+++I+ YV N EA
Sbjct: 225 A-----------------------------------EKDVISWSTVIACYVQNGAAAEAL 249
Query: 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEM 275
+F D+ M DG EP T VL ACA + L +G++ H LAI GL+++ V ALV+M
Sbjct: 250 LVFNDM-MDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDM 308
Query: 276 YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLT-PDIYT 334
Y + A F I + + GF N +++ FS ML + T PD
Sbjct: 309 YMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAIL 368
Query: 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS 394
+ +L +CS L +E+ K H+Y I+ G+DS+ IG +LV++Y++CGSL +A + I+
Sbjct: 369 MVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIA 428
Query: 395 TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALSACVHAGSIKTGS 453
D V +++T Y +HG G + + F ++ S +P+ ++FLS LSAC HAG I G
Sbjct: 429 LKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGL 488
Query: 454 EFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVS 512
F LM Y + P+L+HY +VDLL R G+L A E K++P +P + G LLG C
Sbjct: 489 RIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRI 548
Query: 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCS 572
H N E + A +L ELE N+ G Y++++N++ G W ++ + R +K R + K S
Sbjct: 549 HQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAES 608
Query: 573 WIEDRDEIHKFRASDRSHDRSEEIYTII 600
IE R ++H+F A D H E +Y ++
Sbjct: 609 LIEIRRKVHRFVADDELHPEKEPVYGLL 636
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 192/394 (48%), Gaps = 13/394 (3%)
Query: 168 VGYCEN-GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDG 226
+G+C + +AR++F +M +R + WN+++ ++E F + RD
Sbjct: 1 MGFCRKFSSSVDARQMFGEM----TKRSLYQWNTLLKSLSREKQWEEVLYHFSHMF-RDE 55
Query: 227 IEPTSFTFGSVLIACADMNSLRKGKEIHALAIA-LGLQSDTFVGGALVEMYCRYQDLVAA 285
+P +FT L AC ++ + G+ IH + L SD +VG +L+ MY + ++ A
Sbjct: 56 EKPDNFTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEA 115
Query: 286 QMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEM-LSLDLTPDIYTVGIILSACSS 344
FDE+E + + GFE N + A++ F M ++ D+TPD T+ ++SAC+
Sbjct: 116 LRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTK 175
Query: 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAM 404
L+ G+ VH + IR G+ +D+ + +L++ YAK + K A +K I+ D++S + +
Sbjct: 176 LSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTV 235
Query: 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV 464
+ Y +G E + F ++ G P+ + L L AC A ++ G + +L +
Sbjct: 236 IACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGL 295
Query: 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAAD 524
+ +K T +VD+ + EAY +IP D V W AL+ G +G + I
Sbjct: 296 ETEVKVSTALVDMYMKCFSPEEAYAVFSRIP-RKDVVSWVALISGFTLNG-MAHRSIEEF 353
Query: 525 RLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558
++ LE N + +++ + G S+L Q
Sbjct: 354 SIMLLENNTRPDAILMVKVL---GSCSELGFLEQ 384
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 171/394 (43%), Gaps = 47/394 (11%)
Query: 27 NSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQ 86
NS++ A + EA+ + ++ D ++SWS VI + QNG EA+ + M
Sbjct: 202 NSLLNCYAKSRAFKEAVNLFKMIAEKD-----VISWSTVIACYVQNGAAAEALLVFNDMM 256
Query: 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML 146
+G EPN T+ VL ACA L G++ H R G + V LVD+Y +C
Sbjct: 257 DDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPE 316
Query: 147 SALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYV 206
A +FS+ K+ VS +I G+ NG M H +
Sbjct: 317 EAYAVFSRIPRKDVVSWVALISGFTLNG-----------MAHRSI--------------- 350
Query: 207 DNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT 266
E FS+ +L+ + P + VL +C+++ L + K H+ I G S+
Sbjct: 351 ------EEFSI---MLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNP 401
Query: 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEML-S 325
F+G +LVE+Y R L A F+ I + ++ G+ + A++ F+ M+ S
Sbjct: 402 FIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKS 461
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR-CGYDSDVHIGTALVDMYAKCGSLK 384
++ P+ T ILSACS + G ++ + ++ LVD+ + G L
Sbjct: 462 SEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLD 521
Query: 385 HARLAYKRI---STPDLVSQNAMLTAYAMHGHGK 415
A KR+ TP ++ +L A +H +G+
Sbjct: 522 TAIEITKRMPFSPTPQIL--GTLLGACRIHQNGE 553
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 37/226 (16%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC S ++A VF +P +D VSW ++++ NG+ ++E M +N P+ +
Sbjct: 308 MYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAI 367
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
V+G ++ G+ E+A K FH Y+
Sbjct: 368 LMVKVLGSCSELGFLEQA-----------------------------------KCFHSYV 392
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ GF SNPF+ LV++Y RCG + +A K+F+ ++K+ V ++I GY +G +A
Sbjct: 393 IKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKAL 452
Query: 181 ELFDQM-EHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD 225
E F+ M + V+ +++ S++S L E +F+ L++ D
Sbjct: 453 ETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFK-LMVND 497
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 43/191 (22%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y +CGSL +A KVF + +D V W S++T +G +ALE M PN V
Sbjct: 410 LYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEV 469
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEG--LEPNARTLSSVLPACARLQKLSLGKEFHG 118
++ +++ + G E + +F++ L PN L+ ++
Sbjct: 470 TFLSILSACSHAGLIHEGL-RIFKLMVNDYRLAPN-------------LEHYAV------ 509
Query: 119 YITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYC---ENGN 175
LVD+ R GD+ +A++I + ++G C +NG
Sbjct: 510 ----------------LVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGE 553
Query: 176 VAE--ARELFD 184
+AE A++LF+
Sbjct: 554 MAETVAKKLFE 564
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 198/681 (29%), Positives = 319/681 (46%), Gaps = 130/681 (19%)
Query: 1 MYGKCGSLDDAKKVFKMMPER-----------------------------------DCVS 25
MYGKCGSL DA++VF MPER D +
Sbjct: 111 MYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFA 170
Query: 26 WNSVVTACAANGLVLEALECLERMSSLDNET----------------------------- 56
+ S++ ACA++ V + ++ L++ +
Sbjct: 171 FGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIP 230
Query: 57 -PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL-EPNARTLSSVLPACARLQKLSLGK 114
+L+SWS++I GF+Q G++ EA+ L M + G+ PN S L AC+ L + G
Sbjct: 231 MKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGS 290
Query: 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG 174
+ HG ++ N L D+Y RCG + SA
Sbjct: 291 QIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSA-------------------------- 324
Query: 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF 234
R +FDQ+E + SWN +I+G +N DEA S+F + G P + +
Sbjct: 325 -----RRVFDQIE----RPDTASWNVIIAGLANNGYADEAVSVFSQM-RSSGFIPDAISL 374
Query: 235 GSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294
S+L A +L +G +IH+ I G +D V +L+ MY DL F++ N
Sbjct: 375 RSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRN 434
Query: 295 IENLLGKMKEDGFEPNVYTWNA--------------MQLFSEMLSLDLTPDIYTVGIILS 340
+ +WN ++LF ML + PD T+G +L
Sbjct: 435 -------------NADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLR 481
Query: 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVS 400
C +++++ G QVH Y+++ G + I L+DMYAKCGSL AR + + D+VS
Sbjct: 482 GCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS 541
Query: 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM- 459
+ ++ YA G G+E + F+ + ++G P+H++F+ L+AC H G ++ G + + M
Sbjct: 542 WSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQ 601
Query: 460 AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFG 519
+ + P+ +H +C+VDLL+RAG L EA FI ++ + PD V+W LL C + GN+
Sbjct: 602 TEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLA 661
Query: 520 QIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDE 579
Q AA+ +++++P N+ +V+L ++ A +G W + A R MK + K PG SWIE D+
Sbjct: 662 QKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDK 721
Query: 580 IHKFRASDRSHDRSEEIYTII 600
IH F A D H ++IYT++
Sbjct: 722 IHIFFAEDIFHPERDDIYTVL 742
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 115/443 (25%), Positives = 192/443 (43%), Gaps = 37/443 (8%)
Query: 72 NGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFV 131
N Y E F + + RT S++ AC+ + L+ G++ H +I + + +
Sbjct: 45 NFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTIL 104
Query: 132 VNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGV 191
N ++ +Y +CG + A ++F +N VS ++I GY +NG AEA L+ +M
Sbjct: 105 NNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKM----- 159
Query: 192 QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGK 251
+++ + P F FGS++ ACA + + GK
Sbjct: 160 -------------------------------LQEDLVPDQFAFGSIIKACASSSDVGLGK 188
Query: 252 EIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNV 311
++HA I L S AL+ MY R+ + A F I + + GF
Sbjct: 189 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG 248
Query: 312 YTWNAMQLFSEMLSLDL-TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIG 370
+ + A+ EMLS + P+ Y G L ACSSL + G Q+H I+ + G
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG 308
Query: 371 TALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFR 430
+L DMYA+CG L AR + +I PD S N ++ A +G+ E ++ F ++ +SGF
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI 368
Query: 431 PDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEF 490
PD IS S L A ++ G + + + L ++ + + +L +
Sbjct: 369 PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNL 428
Query: 491 IKKIPMAPDSVMWGALLGGCVSH 513
+ DSV W +L C+ H
Sbjct: 429 FEDFRNNADSVSWNTILTACLQH 451
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 146/318 (45%), Gaps = 4/318 (1%)
Query: 199 NSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAI 258
N I+ ++ Y EA F + T+ S++ AC+ SL +G++IH +
Sbjct: 35 NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94
Query: 259 ALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKE-DGFEPNVYTWNAM 317
+ DT + ++ MY + L A+ FD + NL+ G+ N A+
Sbjct: 95 NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE-RNLVSYTSVITGYSQNGQGAEAI 153
Query: 318 QLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMY 377
+L+ +ML DL PD + G I+ AC+S + + GKQ+HA I+ S + AL+ MY
Sbjct: 154 RLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMY 213
Query: 378 AKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISF 436
+ + A + I DL+S ++++ ++ G E ++H + +L+ G F P+ F
Sbjct: 214 VRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIF 273
Query: 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPM 496
S+L AC GS+ L ++ + + D+ +R G L A +I
Sbjct: 274 GSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIE- 332
Query: 497 APDSVMWGALLGGCVSHG 514
PD+ W ++ G ++G
Sbjct: 333 RPDTASWNVIIAGLANNG 350
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 197/670 (29%), Positives = 321/670 (47%), Gaps = 107/670 (15%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KCG L A +F + +D VSWNS++T
Sbjct: 59 YAKCGKLAKAHSIFNAIICKDVVSWNSLIT------------------------------ 88
Query: 62 WSAVIGGFTQNG--YDEEAIGMLFR-MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHG 118
G++QNG + LFR M+A+ + PNA TL+ + A + LQ ++G++ H
Sbjct: 89 ------GYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHA 142
Query: 119 YITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAE 178
+ + + +V LV +Y + G + LK+F+ +N + +T++ GY G V E
Sbjct: 143 LVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEE 202
Query: 179 ARELFD---------------------------------QMEHLGVQRGIISW----NSM 201
A ++F+ Q+ + ++ G++ + N++
Sbjct: 203 AIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNAL 262
Query: 202 ISGYVDNSLYDEAFSMFRDLLMRD------------------------------GIEPTS 231
++ Y +EA MF R+ GI+P+
Sbjct: 263 VTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSE 322
Query: 232 FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDE 291
+T VL AC+D+ L +GK++H+ + LG + F ALV+MY + L A+ FD
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDC 382
Query: 292 IENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERG 351
++ + L G+ N A+ L+ M + + P+ T+ +L ACSSLAT+E G
Sbjct: 383 LQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG 442
Query: 352 KQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH 411
KQVH + I+ G+ +V IG+AL MY+KCGSL+ L ++R D+VS NAM++ + +
Sbjct: 443 KQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHN 502
Query: 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YYDVKPSLKH 470
G G E + F +LA G PD ++F++ +SAC H G ++ G +F++M+ + P + H
Sbjct: 503 GQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDH 562
Query: 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530
Y CMVDLLSRAG+L EA EFI+ + +W LL C +HG E G A ++L+ L
Sbjct: 563 YACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALG 622
Query: 531 PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSH 590
+ YV L+ ++ GR D+ R + M+ + K GCSWIE +++ H F D H
Sbjct: 623 SRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMH 682
Query: 591 DRSEEIYTII 600
EE ++
Sbjct: 683 PMIEETKDLV 692
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/463 (23%), Positives = 195/463 (42%), Gaps = 84/463 (18%)
Query: 90 LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSAL 149
L P+ TL L ++ + L G+ HG I R G + N LV+ Y +CG + A
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69
Query: 150 KIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS 209
IF N + C + ++SWNS+I+GY N
Sbjct: 70 SIF------NAIIC-----------------------------KDVVSWNSLITGYSQNG 94
Query: 210 LYDEAFS---MFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT 266
+++ +FR++ +D I P ++T + A + + S G++ HAL + + D
Sbjct: 95 GISSSYTVMQLFREMRAQD-ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDI 153
Query: 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGF-------EPNVYTWNAM-- 317
+V +LV MYC+ + EDG E N YTW+ M
Sbjct: 154 YVDTSLVGMYCK---------------------AGLVEDGLKVFAYMPERNTYTWSTMVS 192
Query: 318 ------------QLFSEML--SLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY 363
++F+ L + + Y +LS+ ++ + G+Q+H I+ G
Sbjct: 193 GYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGL 252
Query: 364 DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRR 423
V + ALV MY+KC SL A + + ++ +AM+T Y+ +G E + F R
Sbjct: 253 LGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSR 312
Query: 424 ILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE 483
+ ++G +P + + L+AC ++ G + + + L T +VD+ ++AG
Sbjct: 313 MFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGC 372
Query: 484 LGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRL 526
L +A + + D +W +L+ G V + + E I R+
Sbjct: 373 LADARKGFDCLQ-ERDVALWTSLISGYVQNSDNEEALILYRRM 414
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 36/252 (14%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY K G L DA+K F + ERD W S+++
Sbjct: 366 MYAKAGCLADARKGFDCLQERDVALWTSLIS----------------------------- 396
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
G+ QN +EEA+ + RM+ G+ PN T++SVL AC+ L L LGK+ HG+
Sbjct: 397 -------GYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHT 449
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
++GF + + L +Y +CG + +F + K+ VS N +I G NG EA
Sbjct: 450 IKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEAL 509
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
ELF++M G++ +++ ++IS + + F + + G++P + ++
Sbjct: 510 ELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDL 569
Query: 241 CADMNSLRKGKE 252
+ L++ KE
Sbjct: 570 LSRAGQLKEAKE 581
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 13/229 (5%)
Query: 327 DLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHA 386
+L P T+ L+ S + G+ VH IR G + + LV+ YAKCG L A
Sbjct: 9 ELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKA 68
Query: 387 RLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH-------FRRILASGFRPDHISFLSA 439
+ I D+VS N+++T Y+ +G GI+ FR + A P+ +
Sbjct: 69 HSIFNAIICKDVVSWNSLITGYSQNG----GISSSYTVMQLFREMRAQDILPNAYTLAGI 124
Query: 440 LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPD 499
A S G + L+ + T +V + +AG + + + +P +
Sbjct: 125 FKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERN 183
Query: 500 SVMWGALLGGCVSHGNLEFG-QIAADRLIELEPNNTGNYVMLANLFAYA 547
+ W ++ G + G +E ++ L E E + +YV A L + A
Sbjct: 184 TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLA 232
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 193/658 (29%), Positives = 320/658 (48%), Gaps = 77/658 (11%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
+ + G+L +A+ +F+ M R VSW ++++A A NG + +A + + M S
Sbjct: 60 HARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMP-----VRVTTS 114
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
++A+I +N D +G + + + E NA + ++++ R + EF T
Sbjct: 115 YNAMITAMIKNKCD---LGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEA-EFLYAET 170
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
F + N L+ Y R G A+++F ++K VSC++++ GYC+ G + +AR
Sbjct: 171 PVKF-RDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
LFD+M +R +I+W +MI GY +++ F +F + ++ S T + AC
Sbjct: 230 LFDRM----TERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKAC 285
Query: 242 ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR----------------------- 278
D R+G +IH L + L+ D F+G +L+ MY +
Sbjct: 286 RDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWN 345
Query: 279 -----------------------------YQDLVAAQMAFDEIENIENLLGKMKE----- 304
+ D++ EI L G M E
Sbjct: 346 SLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNIT 405
Query: 305 -----DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAI 359
F N Y A+ F +ML ++ P+ YT +LSA +SLA + G Q+H +
Sbjct: 406 WTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVV 465
Query: 360 RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA 419
+ +D+ + +LV MY KCG+ A + IS P++VS N M++ Y+ +G GK+ +
Sbjct: 466 KMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALK 525
Query: 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYTCMVDLL 478
F + +SG P+ ++FL+ LSACVH G + G ++F M + Y+++P HY CMVDLL
Sbjct: 526 LFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLL 585
Query: 479 SRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538
R+G L +A I +P P S +WG+LL +H ++ ++AA +LIELEP++ YV
Sbjct: 586 GRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYV 645
Query: 539 MLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEI 596
+L+ L++ G+ D R K +R+ K PG SWI + E+H F A D S EEI
Sbjct: 646 VLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEI 703
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 124/256 (48%), Gaps = 28/256 (10%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLD------- 53
MY K G + +AK VF +M +D VSWNS++T + EA E E+M D
Sbjct: 319 MYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDM 378
Query: 54 --------------------NETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN 93
E N ++W+A+I F NGY EEA+ +M + + PN
Sbjct: 379 IKGFSGKGEISKCVELFGMMPEKDN-ITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPN 437
Query: 94 ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFS 153
+ T SSVL A A L L G + HG + + +++ V N LV +Y +CG+ A KIFS
Sbjct: 438 SYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFS 497
Query: 154 KFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE 213
S N VS NT+I GY NG +A +LF +E G + +++ +++S V D
Sbjct: 498 CISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDL 557
Query: 214 AFSMFRDLLMRDGIEP 229
+ F+ + IEP
Sbjct: 558 GWKYFKSMKSSYNIEP 573
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/447 (21%), Positives = 176/447 (39%), Gaps = 69/447 (15%)
Query: 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189
F N + + R G++ A IF + S ++ VS +I Y ENG +++A ++FD+M
Sbjct: 51 FQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMP-- 108
Query: 190 GVQRGIISWNSMISGYVDNSL-YDEAFSMFRDLLMRDGI---------------EPTSFT 233
R S+N+MI+ + N +A+ +F D+ ++ + + F
Sbjct: 109 --VRVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFL 166
Query: 234 FGSVLIACADMNS--------LRKGKEIHALAIALGLQSDTFVG-GALVEMYCRYQDLVA 284
+ + D + LR GK A+ + G+ V ++V YC+ +V
Sbjct: 167 YAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVD 226
Query: 285 AQMAFDEIENIENLLGKMKEDGFEPNVYTWNAM-------QLFSEMLSL--------DLT 329
A+ FD + E NV TW AM F + L D+
Sbjct: 227 ARSLFDRMT--------------ERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVK 272
Query: 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLA 389
+ T+ ++ AC G Q+H R + D+ +G +L+ MY+K G + A+
Sbjct: 273 VNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAV 332
Query: 390 YKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449
+ + D VS N+++T E F ++ D +S+ + G I
Sbjct: 333 FGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK----DMVSWTDMIKGFSGKGEI 388
Query: 450 KTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI---PMAPDSVMWGAL 506
E F +M D +T M+ G EA + K+ + P+S + ++
Sbjct: 389 SKCVELFGMMPEKDNIT----WTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSV 444
Query: 507 LGGCVSHGNLEFGQIAADRLIELEPNN 533
L S +L G R++++ N
Sbjct: 445 LSATASLADLIEGLQIHGRVVKMNIVN 471
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 188/602 (31%), Positives = 307/602 (50%), Gaps = 48/602 (7%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
+Y KCG L A+ F E + S+N +V A A + + A + + + P+ V
Sbjct: 52 LYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQ-----PDTV 106
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
S++ +I G+ A+ + RM+ G E + TLS ++ AC ++ L K+ H +
Sbjct: 107 SYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACC--DRVDLIKQLHCFS 164
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
GF S V N V Y + G + EA
Sbjct: 165 VSGGFDSYSSVNNAFVTYYSK-------------------------------GGLLREAV 193
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+F M+ L R +SWNSMI Y + +A +++++++ + G + FT SVL A
Sbjct: 194 SVFYGMDEL---RDEVSWNSMIVAYGQHKEGAKALALYKEMIFK-GFKIDMFTLASVLNA 249
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY---QDLVAAQMAFDEIENIEN 297
++ L G++ H I G ++ VG L++ Y + + ++ F EI + +
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDL 309
Query: 298 LLGKMKEDGFEPNV-YTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356
++ G+ N + A++ F +M + PD + + SACS+L++ + KQ+H
Sbjct: 310 VVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHG 369
Query: 357 YAIRCGYDSD-VHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGK 415
AI+ S+ + + AL+ +Y K G+L+ AR + R+ + VS N M+ YA HGHG
Sbjct: 370 LAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGT 429
Query: 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YYDVKPSLKHYTCM 474
E + ++R+L SG P+ I+F++ LSAC H G + G E+F+ M + ++P +HY+CM
Sbjct: 430 EALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCM 489
Query: 475 VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534
+DLL RAG+L EA FI +P P SV W ALLG C H N+ + AA+ L+ ++P
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAA 549
Query: 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSE 594
YVMLAN++A A +W ++A R+ M+ +R+ K PGCSWIE + + H F A D SH
Sbjct: 550 TPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIR 609
Query: 595 EI 596
E+
Sbjct: 610 EV 611
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/512 (25%), Positives = 229/512 (44%), Gaps = 67/512 (13%)
Query: 95 RTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSK 154
+T +L + L GK H ++ S+ ++ N V++Y +CG + A F
Sbjct: 9 KTFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYS 68
Query: 155 FSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214
N S N I+ Y ++ + AR+LFD++ Q +S+N++ISGY D A
Sbjct: 69 TEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIP----QPDTVSYNTLISGYADARETFAA 124
Query: 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVE 274
+F+ + + G E FT ++ AC D L K++H +++ G S + V A V
Sbjct: 125 MVLFKR-MRKLGFEVDGFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVT 181
Query: 275 MYCR---YQDLVAAQMAFDEIENIENL------LGKMKEDGFEPNVYTWNAMQLFSEMLS 325
Y + ++ V+ DE+ + + G+ KE A+ L+ EM+
Sbjct: 182 YYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGA--------KALALYKEMIF 233
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG---S 382
D++T+ +L+A +SL + G+Q H I+ G+ + H+G+ L+D Y+KCG
Sbjct: 234 KGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDG 293
Query: 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGH-GKEGIAHFRRILASGFRPDHISFLSALS 441
+ + ++ I +PDLV N M++ Y+M+ +E + FR++ G RPD SF+ S
Sbjct: 294 MYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353
Query: 442 AC-----------VHAGSIKT-------------------GSEFFDLMAYYDVKPSLK-- 469
AC +H +IK+ D +D P L
Sbjct: 354 ACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAV 413
Query: 470 HYTCMVDLLSRAGELGEA---YEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRL 526
+ CM+ ++ G EA Y+ + +AP+ + + A+L C G ++ GQ + +
Sbjct: 414 SFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTM 473
Query: 527 IE---LEPNNTGNYVMLANLFAYAGRWSDLAR 555
E +EP +Y + +L AG+ + R
Sbjct: 474 KETFKIEP-EAEHYSCMIDLLGRAGKLEEAER 504
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 314 bits (804), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/525 (33%), Positives = 272/525 (51%), Gaps = 41/525 (7%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFH 117
+++SW+ +I G+ +NGY +A+ M M E ++ + T+ S+LP C L+ L +G+ H
Sbjct: 182 DVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVH 241
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
+ V N LV++Y +CG M
Sbjct: 242 KLVEEKRLGDKIEVKNALVNMYLKCGRM-------------------------------D 270
Query: 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237
EAR +FD+ME +R +I+W MI+GY ++ + A + R L+ +G+ P + T S+
Sbjct: 271 EARFVFDRME----RRDVITWTCMINGYTEDGDVENALELCR-LMQFEGVRPNAVTIASL 325
Query: 238 LIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
+ C D + GK +H A+ + SD + +L+ MY + + + F
Sbjct: 326 VSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHT 385
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
G N +A+ LF M D+ P+I T+ +L A ++LA + + +H Y
Sbjct: 386 GPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCY 445
Query: 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TPDLVSQNAMLTAYAMHGH 413
+ G+ S + T LV +Y+KCG+L+ A + I + D+V A+++ Y MHG
Sbjct: 446 LTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGD 505
Query: 414 GKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVKPSLKHYT 472
G + F ++ SG P+ I+F SAL+AC H+G ++ G F M +Y HYT
Sbjct: 506 GHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYT 565
Query: 473 CMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532
C+VDLL RAG L EAY I IP P S +WGALL CV+H N++ G++AA++L ELEP
Sbjct: 566 CIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPE 625
Query: 533 NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDR 577
NTGNYV+LAN++A GRW D+ + R M++ + K PG S IE R
Sbjct: 626 NTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIR 670
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 180/404 (44%), Gaps = 23/404 (5%)
Query: 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223
+T+ V Y G++ AR+LF++M Q ++S+N +I YV LY +A S+F ++
Sbjct: 53 STLSVTYALCGHITYARKLFEEMP----QSSLLSYNIVIRMYVREGLYHDAISVFIRMV- 107
Query: 224 RDGIE--PTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQD 281
+G++ P +T+ V A ++ S++ G +H + D +V AL+ MY +
Sbjct: 108 SEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGK 167
Query: 282 LVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSA 341
+ A+ FD ++N + + G+ N Y +A+ +F M++ + D T+ +L
Sbjct: 168 VEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPV 227
Query: 342 CSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQ 401
C L +E G+ VH + + ALV+MY KCG + AR + R+ D+++
Sbjct: 228 CGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITW 287
Query: 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY 461
M+ Y G + + R + G RP+ ++ S +S C A + G
Sbjct: 288 TCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVR 347
Query: 462 YDVKPSLKHYTCMVDLLSRAGELGEAYEFI---KKIPMAPDSVMWGALLGGCVSHGNLE- 517
V + T ++ + ++ + + K P W A++ GCV + +
Sbjct: 348 QQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP----WSAIIAGCVQNELVSD 403
Query: 518 -FGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560
G R ++EPN +A L + ++ LA RQ M
Sbjct: 404 ALGLFKRMRREDVEPN-------IATLNSLLPAYAALADLRQAM 440
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 103/421 (24%), Positives = 164/421 (38%), Gaps = 86/421 (20%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG +D+A+ VF M RD ++W ++ +G V ALE L R+
Sbjct: 262 MYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALE-LCRL----------- 309
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
MQ EG+ PNA T++S++ C K++ GK HG+
Sbjct: 310 ------------------------MQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWA 345
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
R S+ + L+ +Y +C + ++FS S + + II G +N V++A
Sbjct: 346 VRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDAL 405
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
LF +M V+ I + NS++ Y
Sbjct: 406 GLFKRMRREDVEPNIATLNSLLPAY----------------------------------- 430
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN--- 297
A + LR+ IH G S LV +Y + L +A F+ I+
Sbjct: 431 -AALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKD 489
Query: 298 -LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356
+L G+ + NA+Q+F EM+ +TP+ T L+ACS +E G +
Sbjct: 490 VVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFR 549
Query: 357 YAIRCGYDSDVHIG--TALVDMYAKCGSLKHARLAYKRIST----PDLVSQNAMLTAYAM 410
+ + Y + T +VD+ + G L AY I+T P A+L A
Sbjct: 550 FMLE-HYKTLARSNHYTCIVDLLGRAGRLDE---AYNLITTIPFEPTSTVWGALLAACVT 605
Query: 411 H 411
H
Sbjct: 606 H 606
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 121/287 (42%), Gaps = 72/287 (25%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC +D +VF + W++++ C N LV +AL +RM
Sbjct: 363 MYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRM----------- 411
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+ E +EPN TL+S+LPA A L L H Y+
Sbjct: 412 -------------------------RREDVEPNIATLNSLLPAYAALADLRQAMNIHCYL 446
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFS----KFSIKNEVSCNTIIVGYCENGNV 176
T+ GFMS+ GLV VY +CG + SA KIF+ K K+ V +I GY +G+
Sbjct: 447 TKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDG 506
Query: 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFR----------------- 219
A ++F +M GV I++ S ++ + L +E ++FR
Sbjct: 507 HNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTC 566
Query: 220 --DLLMRDG-------------IEPTSFTFGSVLIACADMNSLRKGK 251
DLL R G EPTS +G++L AC +++ G+
Sbjct: 567 IVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGE 613
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD 397
+L+ ++ ++ + K +H + I G S HI + L YA CG + +AR ++ +
Sbjct: 21 LLNHFAATQSISKTKALHCHVITGGRVSG-HILSTLSVTYALCGHITYARKLFEEMPQSS 79
Query: 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFR--PDHISFLSALSACVHAGSIKTG 452
L+S N ++ Y G + I+ F R+++ G + PD ++ A S+K G
Sbjct: 80 LLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLG 136
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/535 (33%), Positives = 288/535 (53%), Gaps = 42/535 (7%)
Query: 54 NETPNLVSWSAVIGGFTQNGYDEEAIGMLFR-MQAEGLEPNARTLSSVLPACARLQKLSL 112
E PN S++ +I G T D EA L+R M+ GL+P+ T + V ACA+L+++ +
Sbjct: 91 TEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGV 150
Query: 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCE 172
G+ H + + G + + + L+ +Y +CG VGY
Sbjct: 151 GRSVHSSLFKVGLERDVHINHSLIMMYAKCGQ-----------------------VGY-- 185
Query: 173 NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSF 232
AR+LFD++ +R +SWNSMISGY + +A +FR + +G EP
Sbjct: 186 ------ARKLFDEI----TERDTVSWNSMISGYSEAGYAKDAMDLFRKM-EEEGFEPDER 234
Query: 233 TFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292
T S+L AC+ + LR G+ + +AI + TF+G L+ MY + DL +A+ F+++
Sbjct: 235 TLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQM 294
Query: 293 ENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGK 352
+ + + N + A +LF EM ++PD T+ +LSAC S+ +E GK
Sbjct: 295 IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGK 354
Query: 353 QVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHG 412
Q+ +A ++++ T LVDMY KCG ++ A ++ + + + NAM+TAYA G
Sbjct: 355 QIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQG 414
Query: 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHY 471
H KE + F R+ P I+F+ LSACVHAG + G +F ++ + + + P ++HY
Sbjct: 415 HAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHY 471
Query: 472 TCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL-E 530
T ++DLLSRAG L EA+EF+++ P PD +M A+LG C ++ + A L+E+ E
Sbjct: 472 TNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKE 531
Query: 531 PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRA 585
N GNYV+ +N+ A W + A+ R M+DR + K+PGCSWIE E+ +F A
Sbjct: 532 AKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLA 586
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 175/410 (42%), Gaps = 79/410 (19%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG + A+K+F + ERD VSWNS+++
Sbjct: 176 MYAKCGQVGYARKLFDEITERDTVSWNSMIS----------------------------- 206
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
G+++ GY ++A+ + +M+ EG EP+ RTL S+L AC+ L L G+
Sbjct: 207 -------GYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMA 259
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ F+ + L+ +Y +CGD+ SA ++F++ K+ V+ +I Y +NG +EA
Sbjct: 260 ITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAF 319
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+LF +ME + G+ P + T +VL A
Sbjct: 320 KLFFEME------------------------------------KTGVSPDAGTLSTVLSA 343
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
C + +L GK+I A L LQ + +V LV+MY + + A F+ +
Sbjct: 344 CGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATW 403
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATMERG-KQVHAYA 358
+ + A+ LF M + P DI +G +LSAC + +G + H +
Sbjct: 404 NAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIG-VLSACVHAGLVHQGCRYFHEMS 459
Query: 359 IRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVSQNAMLTA 407
G + T ++D+ ++ G L A +R PD + A+L A
Sbjct: 460 SMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGA 509
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 89/231 (38%), Gaps = 51/231 (22%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGKCG +++A +VF+ MP ++ +WN+++TA A G EAL +RMS
Sbjct: 378 MYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMS---------- 427
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLG-KEFHGY 119
+ P+ T VL AC + G + FH
Sbjct: 428 -----------------------------VPPSDITFIGVLSACVHAGLVHQGCRYFHEM 458
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
+ G + ++D+ R G + A + +F K + I+G C
Sbjct: 459 SSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAI 518
Query: 180 RE-----LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD 225
RE L + E +IS N + D ++DE+ M LMRD
Sbjct: 519 REKAMRMLMEMKEAKNAGNYVISSNVL----ADMKMWDESAKM--RALMRD 563
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 188/579 (32%), Positives = 293/579 (50%), Gaps = 78/579 (13%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG + A KVF + R N+V
Sbjct: 185 MYAKCGEIKSAHKVFNDITLR------------------------------------NVV 208
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
W+++I G+ +N EE + + RM+ + N T +++ AC +L L GK FHG +
Sbjct: 209 CWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCL 268
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
++G + +V L+D+Y +CGD+ +A ++F++ S + V +IVGY NG+V EA
Sbjct: 269 VKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEAL 328
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
LF +M+ GV+ I+P T SVL
Sbjct: 329 SLFQKMK--GVE----------------------------------IKPNCVTIASVLSG 352
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
C + +L G+ +H L+I +G+ DT V ALV MY + A+ F E+E+ ++++
Sbjct: 353 CGLIENLELGRSVHGLSIKVGIW-DTNVANALVHMYAKCYQNRDAKYVF-EMESEKDIVA 410
Query: 301 -KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAI 359
GF N A+ LF M S +TP+ TV + SAC+SL ++ G +HAY++
Sbjct: 411 WNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSV 470
Query: 360 RCGY--DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417
+ G+ S VH+GTAL+D YAKCG + ARL + I + ++ +AM+ Y G
Sbjct: 471 KLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGS 530
Query: 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVD 476
+ F +L +P+ +F S LSAC H G + G ++F M Y+ PS KHYTCMVD
Sbjct: 531 LELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVD 590
Query: 477 LLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536
+L+RAGEL +A + I+K+P+ PD +GA L GC H + G+I ++++L P++
Sbjct: 591 MLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASY 650
Query: 537 YVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIE 575
YV+++NL+A GRW+ R MK R + K G S +E
Sbjct: 651 YVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTME 689
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/461 (24%), Positives = 218/461 (47%), Gaps = 41/461 (8%)
Query: 57 PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF 116
P+ W ++ + N E + + + G + S L AC LQ L GK+
Sbjct: 105 PDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKI 164
Query: 117 HGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNV 176
H + + N V+ GL+D+Y +CG++ SA K+F+ +++N V ++I GY +N
Sbjct: 165 HCQLVKVPSFDN-VVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLC 223
Query: 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236
E LF++M +N L +E +T+G+
Sbjct: 224 EEGLVLFNRMRE------------------NNVLGNE------------------YTYGT 247
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
+++AC +++L +GK H + G++ + + +L++MY + D+ A+ F+E +++
Sbjct: 248 LIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVD 307
Query: 297 NLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356
++ G+ N A+ LF +M +++ P+ T+ +LS C + +E G+ VH
Sbjct: 308 LVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHG 367
Query: 357 YAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKE 416
+I+ G D ++ ALV MYAKC + A+ ++ S D+V+ N++++ ++ +G E
Sbjct: 368 LSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHE 426
Query: 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEF--FDLMAYYDVKPSLKHYTCM 474
+ F R+ + P+ ++ S SAC GS+ GS + + + S+ T +
Sbjct: 427 ALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTAL 486
Query: 475 VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGN 515
+D ++ G+ A I +++ W A++GG G+
Sbjct: 487 LDFYAKCGDPQSARLIFDTIE-EKNTITWSAMIGGYGKQGD 526
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/466 (23%), Positives = 196/466 (42%), Gaps = 66/466 (14%)
Query: 100 VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN 159
+L C + L ++ HG +T NG M + + LV +Y
Sbjct: 50 LLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYG------------------- 87
Query: 160 EVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFR 219
GY + +AR +FDQ+ + W M+ Y N E ++
Sbjct: 88 -------FFGYTK-----DARLVFDQIP----EPDFYLWKVMLRCYCLNKESVEVVKLY- 130
Query: 220 DLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY 279
DLLM+ G F L AC ++ L GK+IH + + D V L++MY +
Sbjct: 131 DLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKC 189
Query: 280 QDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIIL 339
++ +A F++I + G+ N + LF+ M ++ + YT G ++
Sbjct: 190 GEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLI 249
Query: 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLV 399
AC+ L+ + +GK H ++ G + + T+L+DMY KCG + +AR + S DLV
Sbjct: 250 MACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLV 309
Query: 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC-----------VHAGS 448
AM+ Y +G E ++ F+++ +P+ ++ S LS C VH S
Sbjct: 310 MWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLS 369
Query: 449 IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLG 508
IK G +D + +V + ++ + +A +++ ++ D V W +++
Sbjct: 370 IKVG--------IWDTNVA----NALVHMYAKCYQNRDA-KYVFEMESEKDIVAWNSIIS 416
Query: 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554
G +G++ R+ + T N V +A+LF+ LA
Sbjct: 417 GFSQNGSIHEALFLFHRMN--SESVTPNGVTVASLFSACASLGSLA 460
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 177/550 (32%), Positives = 282/550 (51%), Gaps = 70/550 (12%)
Query: 87 AEGLEPNARTLSSVLPA---CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCG 143
++ P++ ++S VL A C SL ++ HG++ R GF S+ FV NG++ Y +C
Sbjct: 122 SDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCD 181
Query: 144 DMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS 203
N+ AR++FD+M +R ++SWNSMIS
Sbjct: 182 -------------------------------NIESARKVFDEMS----ERDVVSWNSMIS 206
Query: 204 GYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQ 263
GY + +++ M++ +L +P T SV AC + L G E+H I +Q
Sbjct: 207 GYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQ 266
Query: 264 SDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEM 323
D + A++ Y + L A+ FDE+ +++ G+ + AM LFSEM
Sbjct: 267 MDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEM 326
Query: 324 LSLDLT-------------------------------PDIYTVGIILSACSSLATMERGK 352
S+ L+ P+ T+ +L + + + ++ GK
Sbjct: 327 ESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGK 386
Query: 353 QVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHG 412
++HA+AIR G D+++++ T+++D YAK G L A+ + L++ A++TAYA+HG
Sbjct: 387 EIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHG 446
Query: 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFD-LMAYYDVKPSLKHY 471
+ F ++ G +PD ++ + LSA H+G FD ++ YD++P ++HY
Sbjct: 447 DSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHY 506
Query: 472 TCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531
CMV +LSRAG+L +A EFI K+P+ P + +WGALL G G+LE + A DRL E+EP
Sbjct: 507 ACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEP 566
Query: 532 NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHD 591
NTGNY ++ANL+ AGRW + R KMK + K PG SWIE + F A D S +
Sbjct: 567 ENTGNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCE 626
Query: 592 RSEEIYTIID 601
RS+E+Y II+
Sbjct: 627 RSKEMYEIIE 636
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 165/341 (48%), Gaps = 42/341 (12%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KC +++ A+KVF M ERD +VS
Sbjct: 177 YTKCDNIESARKVFDEMSERD------------------------------------VVS 200
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQA-EGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
W+++I G++Q+G E+ M M A +PN T+ SV AC + L G E H +
Sbjct: 201 WNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKM 260
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
N + + N ++ Y +CG + A +F + S K+ V+ II GY +G V EA
Sbjct: 261 IENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAM 320
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
LF +ME +G+ +WN+MISG + N+ ++E + FR+++ R G P + T S+L +
Sbjct: 321 ALFSEMESIGLS----TWNAMISGLMQNNHHEEVINSFREMI-RCGSRPNTVTLSSLLPS 375
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
++L+ GKEIHA AI G ++ +V ++++ Y + L+ AQ FD ++ +
Sbjct: 376 LTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAW 435
Query: 301 KMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSA 341
+ + + +A LF +M L PD T+ +LSA
Sbjct: 436 TAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSA 476
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 146/297 (49%), Gaps = 12/297 (4%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KCGSLD A+ +F M E+D V++ ++++ A+GLV EA+ M S+ L +
Sbjct: 279 YAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESI-----GLST 333
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W+A+I G QN + EE I M G PN TLSS+LP+ L GKE H +
Sbjct: 334 WNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAI 393
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
RNG +N +V ++D Y + G +L A ++F ++ ++ II Y +G+ A
Sbjct: 394 RNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACS 453
Query: 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC 241
LFDQM+ LG + ++ +++S + + D A +F +L + IEP G AC
Sbjct: 454 LFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEP-----GVEHYAC 508
Query: 242 ADMNSLRKGKEIHALAIALGLQSDTF--VGGALVEMYCRYQDLVAAQMAFDEIENIE 296
R GK A+ + D V GAL+ DL A+ A D + +E
Sbjct: 509 MVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEME 565
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 194/498 (38%), Gaps = 111/498 (22%)
Query: 155 FSIK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE 213
FSIK + + +I Y +A +FD++ R S+N+++ Y +Y +
Sbjct: 51 FSIKPDNFLASKLISFYTRQDRFRQALHVFDEI----TVRNAFSYNALLIAYTSREMYFD 106
Query: 214 AFSMFRDLL-----MRDGIEPTSFTFGSVLIA---CADMNSLRKGKEIHALAIALGLQSD 265
AFS+F + D P S + VL A C D +++H I G SD
Sbjct: 107 AFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGFDSD 166
Query: 266 TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAM-------- 317
FVG ++ Y + ++ +A+ FDE+ E +V +WN+M
Sbjct: 167 VFVGNGMITYYTKCDNIESARKVFDEMS--------------ERDVVSWNSMISGYSQSG 212
Query: 318 ------QLFSEMLSL-DLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIG 370
+++ ML+ D P+ TV + AC + + G +VH I D+ +
Sbjct: 213 SFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLC 272
Query: 371 TALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHG------------------ 412
A++ YAKCGSL +AR + +S D V+ A+++ Y HG
Sbjct: 273 NAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLS 332
Query: 413 -------------HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459
H +E I FR ++ G RP+ ++ S L + ++ ++K G E
Sbjct: 333 TWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFA 392
Query: 460 AYYDVKPSLKHYTCMVDLLSRAGELGEA-------------------------------- 487
++ T ++D ++ G L A
Sbjct: 393 IRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSAC 452
Query: 488 --YEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLI---ELEPNNTGNYVMLAN 542
++ ++ + PD V A+L G+ + Q D ++ ++EP +Y + +
Sbjct: 453 SLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEP-GVEHYACMVS 511
Query: 543 LFAYAGRWSDLARTRQKM 560
+ + AG+ SD KM
Sbjct: 512 VLSRAGKLSDAMEFISKM 529
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 129/280 (46%), Gaps = 25/280 (8%)
Query: 252 EIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNV 311
++HA + ++ D F+ L+ Y R A FDEI + N + +
Sbjct: 43 QLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEI-TVRNAFS------YNALL 95
Query: 312 YTWNAMQLFSEMLSLDLT-------------PDIYTVGIIL---SACSSLATMERGKQVH 355
+ + +++ + SL L+ PD ++ +L S C +QVH
Sbjct: 96 IAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVH 155
Query: 356 AYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGK 415
+ IR G+DSDV +G ++ Y KC +++ AR + +S D+VS N+M++ Y+ G +
Sbjct: 156 GFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFE 215
Query: 416 EGIAHFRRILA-SGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM 474
+ ++ +LA S F+P+ ++ +S AC + + G E M ++ L +
Sbjct: 216 DCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAV 275
Query: 475 VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514
+ ++ G L A ++ DSV +GA++ G ++HG
Sbjct: 276 IGFYAKCGSLDYARALFDEMS-EKDSVTYGAIISGYMAHG 314
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/620 (29%), Positives = 318/620 (51%), Gaps = 55/620 (8%)
Query: 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83
V S + + A +G + A + + M LD V+W+ ++ +++ G +EAI +
Sbjct: 5 VRLTSKIASLAKSGRIASARQVFDGMPELDT-----VAWNTMLTSYSRLGLHQEAIALFT 59
Query: 84 RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCG 143
+++ +P+ + +++L CA L + G++ + R+GF ++ V N L+D+Y +C
Sbjct: 60 QLRFSDAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCS 119
Query: 144 DMLSALKIFSKFSI--KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSM 201
D LSA K+F +NEV+ +++ Y A ++F +M +R +WN M
Sbjct: 120 DTLSANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMP----KRVAFAWNIM 175
Query: 202 ISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIAC-ADMNSLRKGKEIHALAIAL 260
ISG+ + S+F+++L + +P +TF S++ AC AD +++ G+ +HA+ +
Sbjct: 176 ISGHAHCGKLESCLSLFKEMLESE-FKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKN 234
Query: 261 GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENL--------------LGKMKED- 305
G S +++ Y + L + A E+E+IE L +G+ ++
Sbjct: 235 GWSSAVEAKNSVLSFYTK---LGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKAL 291
Query: 306 -----GFEPNVYTWN--------------AMQLFSEMLSLDLTPDIYTVGIILSACSSLA 346
E N+ TW A++ F EM+ + D + G +L ACS LA
Sbjct: 292 EVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLA 351
Query: 347 TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLT 406
+ GK +H I CG+ ++G ALV++YAKCG +K A A+ I+ DLVS N ML
Sbjct: 352 LLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLF 411
Query: 407 AYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVK 465
A+ +HG + + + ++ASG +PD+++F+ L+ C H+G ++ G F+ M Y +
Sbjct: 412 AFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIP 471
Query: 466 PSLKHYTCMVDLLSRAGELGEAYEFIKK----IPMAPDSVMWGALLGGCVSHGNLEFGQI 521
+ H TCM+D+ R G L EA + + + ++ W LLG C +H + E G+
Sbjct: 472 LEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGRE 531
Query: 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIH 581
+ L EP+ ++V+L+NL+ GRW + R++M +R M K+PGCSWIE +++
Sbjct: 532 VSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVS 591
Query: 582 KFRASDRSHDRSEEIYTIID 601
F D SH R EE+ ++
Sbjct: 592 TFVVGDSSHPRLEELSETLN 611
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/432 (28%), Positives = 197/432 (45%), Gaps = 31/432 (7%)
Query: 1 MYGKCGSLDDAKKVFKMM--PERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN 58
MYGKC A KVF+ M R+ V+W S++ A AL+ M P
Sbjct: 114 MYGKCSDTLSANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEM-------PK 166
Query: 59 LV--SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC-ARLQKLSLGKE 115
V +W+ +I G G E + + M +P+ T SS++ AC A + G+
Sbjct: 167 RVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRM 226
Query: 116 FHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGN 175
H + +NG+ S N ++ Y + G A++ + +VS N+II + G
Sbjct: 227 VHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGE 286
Query: 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235
+A E+F HL ++ I++W +MI+GY N ++A F + +M+ G++ F +G
Sbjct: 287 TEKALEVF----HLAPEKNIVTWTTMITGYGRNGDGEQALRFFVE-MMKSGVDSDHFAYG 341
Query: 236 SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENI 295
+VL AC+ + L GK IH I G Q +VG ALV +Y + D+ A AF +I N
Sbjct: 342 AVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANK 401
Query: 296 ENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERG---- 351
+ + F + A++L+ M++ + PD T +L+ CS +E G
Sbjct: 402 DLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIF 461
Query: 352 -KQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR---LAYKRIST--PDLVSQNAML 405
V Y I D H+ T ++DM+ + G L A+ Y + T + S +L
Sbjct: 462 ESMVKDYRIPLEVD---HV-TCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLL 517
Query: 406 TAYAMHGHGKEG 417
A + H H + G
Sbjct: 518 GACSTHWHTELG 529
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 179/566 (31%), Positives = 296/566 (52%), Gaps = 70/566 (12%)
Query: 55 ETPNLVSWSAVIGGFTQNGYDEEAIGML-FR-MQAEGLEPNARTLSSVLPACARLQKLSL 112
+T ++ W ++IG F+ + L +R M+ G+ P+ T +L A +L+ S
Sbjct: 63 QTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SN 121
Query: 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCE 172
+FH +I + G S+PFV N L I GY
Sbjct: 122 PFQFHAHIVKFGLDSDPFVRNSL-------------------------------ISGYSS 150
Query: 173 NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSF 232
+G A LFD E + +++W +MI G+V N EA F ++ + G+
Sbjct: 151 SGLFDFASRLFDGAE----DKDVVTWTAMIDGFVRNGSASEAMVYFVEM-KKTGVAANEM 205
Query: 233 TFGSVLIACADMNSLRKGKEIHALAIALG-LQSDTFVGGALVEMYCRYQDLVAAQMAFDE 291
T SVL A + +R G+ +H L + G ++ D F+G +LV+MY + AQ FDE
Sbjct: 206 TVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDE 265
Query: 292 IENIENLLGKMKEDGFEPNVYTWNA--------------MQLFSEMLSLDLTPDIYTVGI 337
+ + NV TW A M +F EML D+ P+ T+
Sbjct: 266 MPS--------------RNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSS 311
Query: 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD 397
+LSAC+ + + RG++VH Y I+ + + GT L+D+Y KCG L+ A L ++R+ +
Sbjct: 312 VLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKN 371
Query: 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF- 456
+ + AM+ +A HG+ ++ F +L+S P+ ++F++ LSAC H G ++ G F
Sbjct: 372 VYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFL 431
Query: 457 DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNL 516
+ ++++P HY CMVDL R G L EA I+++PM P +V+WGAL G C+ H +
Sbjct: 432 SMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDY 491
Query: 517 EFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIED 576
E G+ AA R+I+L+P+++G Y +LANL++ + W ++AR R++MKD+++ KSPG SWIE
Sbjct: 492 ELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEV 551
Query: 577 RDEIHKFRA-SDRSHDRSEEIYTIID 601
+ ++ +F A D+ S+++Y +D
Sbjct: 552 KGKLCEFIAFDDKKPLESDDLYKTLD 577
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/410 (23%), Positives = 182/410 (44%), Gaps = 46/410 (11%)
Query: 27 NSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQ 86
NS+++ +++GL A + E ++V+W+A+I GF +NG EA+ M+
Sbjct: 142 NSLISGYSSSGLFDFASRLFD-----GAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMK 196
Query: 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHG-YITRNGFMSNPFVVNGLVDVYRRCGDM 145
G+ N T+ SVL A +++ + G+ HG Y+ + F+ + LVD+Y +C
Sbjct: 197 KTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCY 256
Query: 146 LSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGY 205
A K+F + +N V+ +I G Y
Sbjct: 257 DDAQKVFDEMPSRNVVTWTALIAG-----------------------------------Y 281
Query: 206 VDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSD 265
V + +D+ +F ++L D + P T SVL ACA + +L +G+ +H I ++ +
Sbjct: 282 VQSRCFDKGMLVFEEMLKSD-VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEIN 340
Query: 266 TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLS 325
T G L+++Y + L A + F+ + +GF + Y +A LF MLS
Sbjct: 341 TTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLS 400
Query: 326 LDLTPDIYTVGIILSACSSLATMERGKQVH-AYAIRCGYDSDVHIGTALVDMYAKCGSLK 384
++P+ T +LSAC+ +E G+++ + R + +VD++ + G L+
Sbjct: 401 SHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLE 460
Query: 385 HARLAYKRIST-PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH 433
A+ +R+ P V A+ + +H + G R++ +P H
Sbjct: 461 EAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK--LQPSH 508
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 10/339 (2%)
Query: 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE--AFSMFRDLLMRDGIEPTSFTFGS 236
AR L Q++ L +Q W+S+I + + +F +R + R+G+ P+ TF
Sbjct: 55 ARRLLCQLQTLSIQL----WDSLIGHFSGGITLNRRLSFLAYRHM-RRNGVIPSRHTFPP 109
Query: 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIE 296
+L A + + HA + GL SD FV +L+ Y A FD E+ +
Sbjct: 110 LLKAVFKLRD-SNPFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKD 168
Query: 297 NLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356
+ DGF N AM F EM + + TV +L A + + G+ VH
Sbjct: 169 VVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHG 228
Query: 357 YAIRCG-YDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGK 415
+ G DV IG++LVDMY KC A+ + + + ++V+ A++ Y
Sbjct: 229 LYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFD 288
Query: 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMV 475
+G+ F +L S P+ + S LSAC H G++ G M ++ + T ++
Sbjct: 289 KGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLI 348
Query: 476 DLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514
DL + G L EA +++ + W A++ G +HG
Sbjct: 349 DLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGFAAHG 386
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 43/274 (15%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MYGKC DDA+KVF MP R N+V
Sbjct: 249 MYGKCSCYDDAQKVFDEMPSR------------------------------------NVV 272
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
+W+A+I G+ Q+ ++ + + M + PN +TLSSVL ACA + L G+ H Y+
Sbjct: 273 TWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM 332
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+N N L+D+Y +CG + A+ +F + KN + +I G+ +G +A
Sbjct: 333 IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAF 392
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+LF M V +++ +++S L +E +F + R +EP + + A
Sbjct: 393 DLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHY-----A 447
Query: 241 CADMNSLRKG--KEIHALAIALGLQSDTFVGGAL 272
C RKG +E AL + ++ V GAL
Sbjct: 448 CMVDLFGRKGLLEEAKALIERMPMEPTNVVWGAL 481
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 186/578 (32%), Positives = 279/578 (48%), Gaps = 76/578 (13%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y KCG L+ A KVF MP+RD +V+
Sbjct: 148 YAKCGELEMAIKVFDEMPKRD------------------------------------MVA 171
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQ-AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
W+A+I GF+ + + IG+ M+ +GL PN T+ + PA R L GK HGY
Sbjct: 172 WNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYC 231
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
TR GF ++ V G++DVY + ++ A ++F KNEV+
Sbjct: 232 TRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT------------------ 273
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIE-PTSFTFGSVLI 239
W++MI GYV+N + EA +F +L+ D + T G +L+
Sbjct: 274 -----------------WSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILM 316
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL 299
CA L G+ +H A+ G D V ++ Y +Y L A F EI + +
Sbjct: 317 GCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVIS 376
Query: 300 GKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAI 359
G N + +LF EM + + PDI T+ +L+ACS LA + G H Y +
Sbjct: 377 YNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCV 436
Query: 360 RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA 419
GY + I AL+DMY KCG L A+ + + D+VS N ML + +HG GKE ++
Sbjct: 437 VHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALS 496
Query: 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY--YDVKPSLKHYTCMVDL 477
F + +G PD ++ L+ LSAC H+G + G + F+ M+ ++V P + HY CM DL
Sbjct: 497 LFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDL 556
Query: 478 LSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537
L+RAG L EAY+F+ K+P PD + G LL C ++ N E G + ++ L T +
Sbjct: 557 LARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSL-GETTESL 615
Query: 538 VMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIE 575
V+L+N ++ A RW D AR R K R + K+PG SW++
Sbjct: 616 VLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVD 653
Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/461 (24%), Positives = 208/461 (45%), Gaps = 42/461 (9%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFH 117
N ++W +I + N + E+A+ + ++M G+ P T VL ACA L+ + GK H
Sbjct: 67 NPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIH 126
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
++ + F ++ +V LVD Y +CG++ A+K+
Sbjct: 127 SHVNCSDFATDMYVCTALVDFYAKCGELEMAIKV-------------------------- 160
Query: 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237
FD+M +R +++WN+MISG+ + + +F D+ DG+ P T +
Sbjct: 161 -----FDEMP----KRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGM 211
Query: 238 LIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
A +LR+GK +H +G +D V ++++Y + + ++ A+ FD
Sbjct: 212 FPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNE 271
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLD----LTPDIYTVGIILSACSSLATMERGKQ 353
+ G+ N A ++F +ML D +TP +G+IL C+ + G+
Sbjct: 272 VTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTP--VAIGLILMGCARFGDLSGGRC 329
Query: 354 VHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGH 413
VH YA++ G+ D+ + ++ YAK GSL A + I D++S N+++T ++
Sbjct: 330 VHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCR 389
Query: 414 GKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC 473
+E F + SG RPD + L L+AC H ++ GS + +
Sbjct: 390 PEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNA 449
Query: 474 MVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514
++D+ ++ G+L A + D V W +L G HG
Sbjct: 450 LMDMYTKCGKLDVAKRVFDTMH-KRDIVSWNTMLFGFGIHG 489
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/425 (24%), Positives = 188/425 (44%), Gaps = 55/425 (12%)
Query: 99 SVLPACARLQKLSLGKEFHGYITRNGF-MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI 157
S+L C R + L LG+ H ++ + +S+ V+ L +Y C
Sbjct: 4 SLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASC--------------- 48
Query: 158 KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSM 217
NEV AR +FD++ H + I+W+ MI Y N ++A +
Sbjct: 49 -NEVEL---------------ARHVFDEIPHPRINP--IAWDLMIRAYASNDFAEKALDL 90
Query: 218 FRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYC 277
+ +L G+ PT +T+ VL ACA + ++ GK IH+ +D +V ALV+ Y
Sbjct: 91 YYKML-NSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYA 149
Query: 278 RYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLD-LTPDIYTVG 336
+ +L A FDE+ + + GF + + + LF +M +D L+P++ T+
Sbjct: 150 KCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIV 209
Query: 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP 396
+ A + GK VH Y R G+ +D+ + T ++D+YAK + +AR +
Sbjct: 210 GMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKK 269
Query: 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSA------LSACVHAGSIK 450
+ V+ +AM+ Y + KE F ++L + D+++ ++ L C G +
Sbjct: 270 NEVTWSAMIGGYVENEMIKEAGEVFFQMLVN----DNVAMVTPVAIGLILMGCARFGDLS 325
Query: 451 TGSEFFDLMAYYDVKP----SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGAL 506
G + Y VK L ++ ++ G L +A+ +I + D + + +L
Sbjct: 326 GGR----CVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGL-KDVISYNSL 380
Query: 507 LGGCV 511
+ GCV
Sbjct: 381 ITGCV 385
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 148/319 (46%), Gaps = 17/319 (5%)
Query: 234 FGSVLIACADMNSLRKGKEIHA--LAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDE 291
F S+L C +L G+ IH L +L L S T + L +Y ++ A+ FDE
Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVN-LTRLYASCNEVELARHVFDE 60
Query: 292 IEN--IENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATME 349
I + I + + + N + A+ L+ +ML+ + P YT +L AC+ L ++
Sbjct: 61 IPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAID 120
Query: 350 RGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYA 409
GK +H++ + +D+++ TALVD YAKCG L+ A + + D+V+ NAM++ ++
Sbjct: 121 DGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFS 180
Query: 410 MHGHGKEGIAHF---RRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKP 466
+H + I F RRI G P+ + + A AG+++ G
Sbjct: 181 LHCCLTDVIGLFLDMRRI--DGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSN 238
Query: 467 SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSH------GNLEFGQ 520
L T ++D+ +++ + A + + + V W A++GG V + G + F
Sbjct: 239 DLVVKTGILDVYAKSKCIIYARR-VFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQM 297
Query: 521 IAADRLIELEPNNTGNYVM 539
+ D + + P G +M
Sbjct: 298 LVNDNVAMVTPVAIGLILM 316
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG LD AK+VF M +RD VSWN+++
Sbjct: 453 MYTKCGKLDVAKRVFDTMHKRDIVSWNTMLF----------------------------- 483
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
GF +G +EA+ + MQ G+ P+ TL ++L AC+ + GK+ +
Sbjct: 484 -------GFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSM 536
Query: 121 TRNGFMSNPFV--VNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAE 178
+R F P + N + D+ R G + A +K + ++ ++ C AE
Sbjct: 537 SRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAE 596
Query: 179 -ARELFDQMEHLG 190
E+ +M+ LG
Sbjct: 597 LGNEVSKKMQSLG 609
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 178/555 (32%), Positives = 299/555 (53%), Gaps = 51/555 (9%)
Query: 56 TP--NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLG 113
TP N+VSW+++I G QNG+ A+ F M+ EG+ PN T A A L+ G
Sbjct: 68 TPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTG 127
Query: 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCEN 173
K+ H + G ++DV+ C SA ++ K ++++
Sbjct: 128 KQIHALAVKCG---------RILDVFVGC----SAFDMYCKTRLRDD------------- 161
Query: 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233
AR+LFD++ +R + +WN+ IS V + EA F + DG P S T
Sbjct: 162 -----ARKLFDEIP----ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDG-HPNSIT 211
Query: 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIE 293
F + L AC+D L G ++H L + G +D V L++ Y + + + ++++ F E+
Sbjct: 212 FCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEM- 270
Query: 294 NIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDI-----YTVGIILSACSSLATM 348
+N + Y N + +L L DI + + +LSAC+ +A +
Sbjct: 271 GTKNAVSWCSLVA----AYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 326
Query: 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAY 408
E G+ +HA+A++ + + +G+ALVDMY KCG ++ + A+ + +LV++N+++ Y
Sbjct: 327 ELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 386
Query: 409 AMHGHGKEGIAHFRRILASGF--RPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVK 465
A G +A F + G P++++F+S LSAC AG+++ G + FD M + Y ++
Sbjct: 387 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIE 446
Query: 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADR 525
P +HY+C+VD+L RAG + AYEFIKK+P+ P +WGAL C HG + G +AA+
Sbjct: 447 PGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAEN 506
Query: 526 LIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRA 585
L +L+P ++GN+V+L+N FA AGRW++ R+++K + K G SWI ++++H F+A
Sbjct: 507 LFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQA 566
Query: 586 SDRSHDRSEEIYTII 600
DRSH ++EI T +
Sbjct: 567 KDRSHILNKEIQTTL 581
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 122/296 (41%), Gaps = 67/296 (22%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSW-----NSV------------------------VT 31
MY K DDA+K+F +PER+ +W NSV +T
Sbjct: 152 MYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSIT 211
Query: 32 ACA--------------------------------ANGLVLEALECLERMSS----LDNE 55
CA NGL+ +C + SS +
Sbjct: 212 FCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMG 271
Query: 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKE 115
T N VSW +++ + QN DE+A + R + + +E + +SSVL ACA + L LG+
Sbjct: 272 TKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRS 331
Query: 116 FHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGN 175
H + + FV + LVD+Y +CG + + + F + KN V+ N++I GY G
Sbjct: 332 IHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQ 391
Query: 176 VAEARELFDQM--EHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP 229
V A LF++M G +++ S++S + +F + GIEP
Sbjct: 392 VDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEP 447
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 9/204 (4%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLD-NETPNL 59
MYGKCG ++D+++ F MPE++ V+ NS++ A G V AL E M+ TPN
Sbjct: 354 MYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNY 413
Query: 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACARLQKLSLGKEFHG 118
+++ +++ ++ G E + + M++ G+EP A S ++ R + EF
Sbjct: 414 MTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEF-- 471
Query: 119 YITRNGFMSNPFVVNGLVDVYRRCGD-MLSALKIFSKFSIKNEVSCNTIIVG--YCENGN 175
I + V L + R G L L + F + + S N +++ + G
Sbjct: 472 -IKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGR 530
Query: 176 VAEARELFDQMEHLGVQRGI-ISW 198
AEA + ++++ +G+++G SW
Sbjct: 531 WAEANTVREELKGVGIKKGAGYSW 554
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 37/221 (16%)
Query: 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDV--HIGTALVDMYAKCGSLKHARLAYKR 392
+G++L S ++M G+ VHA ++ DS + L++MY+K + ARL +
Sbjct: 9 LGLLLKNAISASSMRLGRVVHARIVKT-LDSPPPPFLANYLINMYSKLDHPESARLVLRL 67
Query: 393 ISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC--------- 443
++VS ++++ A +GH + F + G P+ +F A A
Sbjct: 68 TPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTG 127
Query: 444 --VHAGSIK--------TGSEFFDLMA----------YYDVKP--SLKHYTCMVD---LL 478
+HA ++K G FD+ +D P +L+ + +
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 187
Query: 479 SRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFG 519
R E EA+ ++I P+S+ + A L C +L G
Sbjct: 188 GRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLG 228
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 306 bits (784), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 192/621 (30%), Positives = 302/621 (48%), Gaps = 88/621 (14%)
Query: 4 KCGSLDDAKKVFKMMPERD-------CVSWNSVVTACAANGLVLEALECLERMSSLDNET 56
KC +L+ K++ + R+ S ++ C L + ++
Sbjct: 28 KCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQE-------- 79
Query: 57 PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF 116
PN+ +++I QN +A + MQ GL + T +L AC+ L + K
Sbjct: 80 PNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMM 139
Query: 117 HGYITRNGFMSNPFVVNGLVDVYRRCGDM--LSALKIFSKFSIKNEVSCNTIIVGYCENG 174
H +I + G S+ +V N L+D Y RCG + A+K+F K S ++ VS N+++ G + G
Sbjct: 140 HNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAG 199
Query: 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF 234
+ +AR LFD+M QR +ISWN+M+ GY +AF +F + R+ + ++
Sbjct: 200 ELRDARRLFDEMP----QRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVM 255
Query: 235 GSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294
G Y + D+ A++ FD++
Sbjct: 256 G----------------------------------------YSKAGDMEMARVMFDKMP- 274
Query: 295 IENLLGKMKEDGFEPNVYTWN--------------AMQLFSEMLSLDLTPDIYTVGIILS 340
L K NV TW A +L +M++ L D V IL+
Sbjct: 275 ---LPAK--------NVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILA 323
Query: 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVS 400
AC+ + G ++H+ R S+ ++ AL+DMYAKCG+LK A + I DLVS
Sbjct: 324 ACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS 383
Query: 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM- 459
N ML +HGHGKE I F R+ G RPD ++F++ L +C HAG I G ++F M
Sbjct: 384 WNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSME 443
Query: 460 AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFG 519
YD+ P ++HY C+VDLL R G L EA + ++ +PM P+ V+WGALLG C H ++
Sbjct: 444 KVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIA 503
Query: 520 QIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDE 579
+ D L++L+P + GNY +L+N++A A W +A R KMK + K G S +E D
Sbjct: 504 KEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDG 563
Query: 580 IHKFRASDRSHDRSEEIYTII 600
IH+F D+SH +S++IY ++
Sbjct: 564 IHEFTVFDKSHPKSDQIYQML 584
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 144/284 (50%), Gaps = 35/284 (12%)
Query: 2 YGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVS 61
Y +C + A ++F+ MPER+ VSW+++V + G + A ++M N+V+
Sbjct: 226 YARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPL---PAKNVVT 282
Query: 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYIT 121
W+ +I G+ + G +EA ++ +M A GL+ +A + S+L AC LSLG H +
Sbjct: 283 WTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILK 342
Query: 122 RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARE 181
R+ SN +V+N L+D+Y +CG++ A +F+ K+ VS NT++ G +G+ EA E
Sbjct: 343 RSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIE 402
Query: 182 LFDQMEHLGVQRGIISWNSMI-----SGYVDNSL---------YD-----EAFSMFRDLL 222
LF +M G++ +++ +++ +G +D + YD E + DLL
Sbjct: 403 LFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLL 462
Query: 223 MRDG-------------IEPTSFTFGSVLIACADMNSLRKGKEI 253
R G +EP +G++L AC N + KE+
Sbjct: 463 GRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEV 506
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/431 (22%), Positives = 174/431 (40%), Gaps = 76/431 (17%)
Query: 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE 160
LP CA L ++ K+ H I R + + L+ C A+++F++ N
Sbjct: 26 LPKCANLNQV---KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82
Query: 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRD 220
CN S+I + NS +AF +F +
Sbjct: 83 HLCN-----------------------------------SLIRAHAQNSQPYQAFFVFSE 107
Query: 221 LLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQ 280
+ R G+ +FT+ +L AC+ + L K +H LGL SD +V AL++ Y R
Sbjct: 108 M-QRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCG 166
Query: 281 DLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAM--------------QLFSEMLSL 326
L + + L KM E + +WN+M +LF EM
Sbjct: 167 GL--------GVRDAMKLFEKMSER----DTVSWNSMLGGLVKAGELRDARRLFDEMPQR 214
Query: 327 DLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHA 386
DL + +L + M + ++ + + + +V Y+K G ++ A
Sbjct: 215 DLI----SWNTMLDGYARCREMSKAFELFEKM----PERNTVSWSTMVMGYSKAGDMEMA 266
Query: 387 RLAYKRISTP--DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV 444
R+ + ++ P ++V+ ++ YA G KE +++ASG + D + +S L+AC
Sbjct: 267 RVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACT 326
Query: 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWG 504
+G + G ++ ++ + ++D+ ++ G L +A++ IP D V W
Sbjct: 327 ESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWN 385
Query: 505 ALLGGCVSHGN 515
+L G HG+
Sbjct: 386 TMLHGLGVHGH 396
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KCG+L A VF +P++D VSWN+++ +G EA+E RM + P+ V
Sbjct: 359 MYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR-EGIRPDKV 417
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQ-AEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
++ AV+ G +E I + M+ L P ++ R+ +L KE
Sbjct: 418 TFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRL---KEAIKV 474
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGN 175
+ + P N ++ G +L A ++ ++ I EV N + + C+ GN
Sbjct: 475 VQ-----TMPMEPNVVI-----WGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGN 520
>sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protein At3g13880
OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1
Length = 748
Score = 305 bits (782), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 187/675 (27%), Positives = 302/675 (44%), Gaps = 110/675 (16%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY KC L A+++F MPER N++
Sbjct: 91 MYCKCRELGFARQLFDRMPER------------------------------------NII 114
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
S++++I G+TQ G+ E+A+ + + L+ + T + L C L LG+ HG +
Sbjct: 115 SFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLV 174
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
NG F++N L+D+Y +CG + A+ +F + +++VS N++I GY G E
Sbjct: 175 VVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPL 234
Query: 181 ELFDQMEH--------------------------------------LGVQRGIISWNSMI 202
L +M LG++ I+ +++
Sbjct: 235 NLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALL 294
Query: 203 SGYVDNSLYDEAFSMFRDL-----------------------------------LMRDGI 227
Y N EA +F + + R G+
Sbjct: 295 DMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGL 354
Query: 228 EPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQM 287
EP+ TF VL AC+ +L G++IHAL QSD F+G AL+E+Y
Sbjct: 355 EPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQ 414
Query: 288 AFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347
F + D N +A LF ++ S + P+ YTV +++SAC+ A
Sbjct: 415 CFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAA 474
Query: 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTA 407
+ G+Q+ YAI+ G D+ + T+ + MYAK G++ A + + PD+ + +AM+++
Sbjct: 475 LSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISS 534
Query: 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAY-YDVKP 466
A HG E + F + G +P+ +FL L AC H G + G ++F M Y + P
Sbjct: 535 LAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQCMKNDYRINP 594
Query: 467 SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRL 526
+ KH+TC+VDLL R G L +A I V W ALL C + + G+ A+RL
Sbjct: 595 NEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSSCRVYKDSVIGKRVAERL 654
Query: 527 IELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586
+ELEP +G+YV+L N++ +G S R+ M+DR + K P SWI ++ H F +
Sbjct: 655 MELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHSFAVA 714
Query: 587 DRSHDRSEEIYTIID 601
D SH S+ IYT+++
Sbjct: 715 DLSHPSSQMIYTMLE 729
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/533 (22%), Positives = 223/533 (41%), Gaps = 115/533 (21%)
Query: 79 IGMLFRMQAEGLEPNARTLSS-----VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVN 133
+G+ +R + +P L S + A+ + LGK HG++ ++ +++N
Sbjct: 27 VGLGYRFLSSLCQPKNTALDSEGYKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLN 86
Query: 134 GLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELF---------- 183
L+++Y +C ++ A ++F + +N +S N++I GY + G +A ELF
Sbjct: 87 NLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKL 146
Query: 184 ------------------DQMEHL-------GVQRGIISWNSMISGYVDNSLYDEAFSMF 218
D E L G+ + + N +I Y D+A S+F
Sbjct: 147 DKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLF 206
Query: 219 -----RDL-------------------------LMRDGIEPTSFTFGSVLIACA-DMNS- 246
RD + RDG+ T++ GSVL AC ++N
Sbjct: 207 DRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEG 266
Query: 247 -LRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKED 305
+ KG IH LG++ D V AL++MY + L A F + +
Sbjct: 267 FIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPS----------- 315
Query: 306 GFEPNVYTWNAM-------------------QLFSEMLSLDLTPDIYTVGIILSACSSLA 346
NV T+NAM +LF +M L P T ++L ACS+
Sbjct: 316 ---KNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAK 372
Query: 347 TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLT 406
T+E G+Q+HA + + SD IG+AL+++YA GS + + S D+ S +M+
Sbjct: 373 TLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMID 432
Query: 407 AYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKP 466
+ + + FR++ +S RP+ + +SAC ++ +G + + Y +K
Sbjct: 433 CHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQ----IQGYAIKS 488
Query: 467 SLKHYTCM----VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGN 515
+ +T + + + +++G + A + ++ PD + A++ HG+
Sbjct: 489 GIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQ-NPDVATYSAMISSLAQHGS 540
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
Query: 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP 396
I+ + ++ GK H + I+ + +++ L++MY KC L AR + R+
Sbjct: 52 ILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPER 111
Query: 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456
+++S N++++ Y G ++ + F + + D ++ AL C + G
Sbjct: 112 NIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLH 171
Query: 457 DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNL 516
L+ + + ++D+ S+ G+L +A + D V W +L+ G V G
Sbjct: 172 GLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCD-ERDQVSWNSLISGYVRVGAA 230
Query: 517 E 517
E
Sbjct: 231 E 231
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 186/612 (30%), Positives = 311/612 (50%), Gaps = 102/612 (16%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY K DA++VF M RD VS+N+++ L LE +E RM
Sbjct: 251 MYLKFRRPTDARRVFDEMDVRDSVSYNTMICGY----LKLEMVEESVRM----------- 295
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
F +N + +P+ T+SSVL AC L+ LSL K + Y+
Sbjct: 296 --------FLEN--------------LDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYM 333
Query: 121 TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180
+ GF+ V N L+DVY +CGDM++A +F+ K+ VS N+II GY ++G++ EA
Sbjct: 334 LKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393
Query: 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240
+LF M + Q I++ +IS V L D
Sbjct: 394 KLFKMMMIMEEQADHITYLMLIS--VSTRLAD---------------------------- 423
Query: 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLG 300
L+ GK +H+ I G+ D V AL++MY + ++ + F + + +
Sbjct: 424 ------LKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTV-- 475
Query: 301 KMKEDGFEPNVYTWNA--------------MQLFSEMLSLDLTPDIYTVGIILSACSSLA 346
TWN +Q+ ++M ++ PD+ T + L C+SLA
Sbjct: 476 ------------TWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLA 523
Query: 347 TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLT 406
GK++H +R GY+S++ IG AL++MY+KCG L+++ ++R+S D+V+ M+
Sbjct: 524 AKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIY 583
Query: 407 AYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM-AYYDVK 465
AY M+G G++ + F + SG PD + F++ + AC H+G + G F+ M +Y +
Sbjct: 584 AYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKID 643
Query: 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADR 525
P ++HY C+VDLLSR+ ++ +A EFI+ +P+ PD+ +W ++L C + G++E + + R
Sbjct: 644 PMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRR 703
Query: 526 LIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRA 585
+IEL P++ G ++ +N +A +W ++ R+ +KD+ + K+PG SWIE +H F +
Sbjct: 704 IIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSS 763
Query: 586 SDRSHDRSEEIY 597
D S +SE IY
Sbjct: 764 GDDSAPQSEAIY 775
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/462 (26%), Positives = 217/462 (46%), Gaps = 38/462 (8%)
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFH 117
N+ W+++I F++NG EA+ +++ + P+ T SV+ ACA L +G +
Sbjct: 70 NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
I GF S+ FV N LVD+Y R G +
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLL-------------------------------T 158
Query: 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237
AR++FD+M R ++SWNS+ISGY + Y+EA ++ +L I P SFT SV
Sbjct: 159 RARQVFDEMP----VRDLVSWNSLISGYSSHGYYEEALEIYHEL-KNSWIVPDSFTVSSV 213
Query: 238 LIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
L A ++ +++G+ +H A+ G+ S V LV MY +++ A+ FDE++ ++
Sbjct: 214 LPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDS 273
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
+ G+ ++++F E L PD+ TV +L AC L + K ++ Y
Sbjct: 274 VSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLLTVSSVLRACGHLRDLSLAKYIYNY 332
Query: 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417
++ G+ + + L+D+YAKCG + AR + + D VS N++++ Y G E
Sbjct: 333 MLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEA 392
Query: 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477
+ F+ ++ + DHI++L +S +K G + L ++D+
Sbjct: 393 MKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDM 452
Query: 478 LSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFG 519
++ GE+G++ + + D+V W ++ CV G+ G
Sbjct: 453 YAKCGEVGDSLKIFSSMGTG-DTVTWNTVISACVRFGDFATG 493
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/550 (24%), Positives = 251/550 (45%), Gaps = 55/550 (10%)
Query: 5 CGSLDDAK-------KVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETP 57
C L DA+ ++ M E D N++V + GL+ A + + M D
Sbjct: 116 CAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRD---- 171
Query: 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFH 117
LVSW+++I G++ +GY EEA+ + ++ + P++ T+SSVLPA L + G+ H
Sbjct: 172 -LVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLH 230
Query: 118 GYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
G+ ++G S V NGLV +Y + A ++F + +++ VS NT+I GY + V
Sbjct: 231 GFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVE 290
Query: 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237
E+ +F +E+L D +P T SV
Sbjct: 291 ESVRMF--LENL-----------------------------------DQFKPDLLTVSSV 313
Query: 238 LIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
L AC + L K I+ + G ++ V L+++Y + D++ A+ F+ +E +
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373
Query: 298 LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY 357
+ G+ + AM+LF M+ ++ D T +++S + LA ++ GK +H+
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433
Query: 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417
I+ G D+ + AL+DMYAKCG + + + + T D V+ N +++A G G
Sbjct: 434 GIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATG 493
Query: 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477
+ ++ S PD +FL L C + + G E + + + L+ ++++
Sbjct: 494 LQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEM 553
Query: 478 LSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT--G 535
S+ G L + +++ D V W ++ ++G G+ A + ++E +
Sbjct: 554 YSKCGCLENSSRVFERMSRR-DVVTWTGMI---YAYGMYGEGEKALETFADMEKSGIVPD 609
Query: 536 NYVMLANLFA 545
+ V +A ++A
Sbjct: 610 SVVFIAIIYA 619
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 112/460 (24%), Positives = 207/460 (45%), Gaps = 48/460 (10%)
Query: 97 LSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156
+S L + + L +L + H + G S+ F L+D Y + S+L +F + S
Sbjct: 10 ISRALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVS 66
Query: 157 IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFS 216
+ + WNS+I + N L+ EA
Sbjct: 67 ----------------------------------PAKNVYLWNSIIRAFSKNGLFPEALE 92
Query: 217 MFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMY 276
F L + P +TF SV+ ACA + G ++ + +G +SD FVG ALV+MY
Sbjct: 93 -FYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMY 151
Query: 277 CRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVG 336
R L A+ FDE+ + + G+ + Y A++++ E+ + + PD +TV
Sbjct: 152 SRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVS 211
Query: 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP 396
+L A +L +++G+ +H +A++ G +S V + LV MY K AR + +
Sbjct: 212 SVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVR 271
Query: 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456
D VS N M+ Y +E + F L F+PD ++ S L AC H + +
Sbjct: 272 DSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIY 330
Query: 457 DLM--AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514
+ M A + ++ ++++ ++D+ ++ G++ A + + D+V W +++ G + G
Sbjct: 331 NYMLKAGFVLESTVRN--ILIDVYAKCGDMITARDVFNSME-CKDTVSWNSIISGYIQSG 387
Query: 515 NL-EFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553
+L E ++ +I E + Y+ML ++ + R +DL
Sbjct: 388 DLMEAMKLFKMMMIMEEQADHITYLMLISV---STRLADL 424
>sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein At3g50420
OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1
Length = 794
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/593 (31%), Positives = 293/593 (49%), Gaps = 75/593 (12%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY CG L+ A+++F + RD V+WN++
Sbjct: 243 MYSSCGDLESARRIFDCVNNRDAVAWNTM------------------------------- 271
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFR-MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGY 119
I G +N E+ + M FR M G++P T S VL C++L SLGK H
Sbjct: 272 -----IVGSLKNDKIEDGL-MFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHAR 325
Query: 120 ITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179
I + +++ + N L+D+Y CGDM A +F + N
Sbjct: 326 IIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPN-------------------- 365
Query: 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239
++SWNS+ISG +N ++A M+R LL P +TF + +
Sbjct: 366 ---------------LVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAIS 410
Query: 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL 299
A A+ GK +H LG + FVG L+ MY + ++ +AQ FD ++ + +L
Sbjct: 411 ATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVL 470
Query: 300 GKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAI 359
G + A+Q F EM D +++ ++ ACS +A + +G+ H AI
Sbjct: 471 WTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAI 530
Query: 360 RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA 419
R G+D + + ALVDMY K G + A + S PDL N+ML AY+ HG ++ ++
Sbjct: 531 RTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALS 590
Query: 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479
F +IL +GF PD +++LS L+AC H GS G ++ M +K KHY+CMV+L+S
Sbjct: 591 FFEQILENGFMPDAVTYLSLLAACSHRGSTLQGKFLWNQMKEQGIKAGFKHYSCMVNLVS 650
Query: 480 RAGELGEAYEFIKKIPMAPDSV-MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538
+AG + EA E I++ P + +W LL CV+ NL+ G AA+++++L+P +T ++
Sbjct: 651 KAGLVDEALELIEQSPPGNNQAELWRTLLSACVNTRNLQIGLYAAEQILKLDPEDTATHI 710
Query: 539 MLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIE-DRDEIHKFRASDRSH 590
+L+NL+A GRW D+A R+K++ K PG SWIE + + F + D+S+
Sbjct: 711 LLSNLYAVNGRWEDVAEMRRKIRGLASSKDPGLSWIEVNNNNTQVFSSGDQSN 763
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 139/570 (24%), Positives = 241/570 (42%), Gaps = 91/570 (15%)
Query: 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLV 60
MY +C SL+ A+KVF MP+R+ V+ + E + SSL ++ L
Sbjct: 31 MYVRCSSLEQARKVFDKMPQRNIVTLFGLSAV----------FEYVSMGSSLHSQIIKLG 80
Query: 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120
S+ M+F M L A ++ + C + L ++ H +
Sbjct: 81 SFQ-----------------MIFFMP---LNEIASSVVELTRKCVSITVLKRARQIHALV 120
Query: 121 TRNGF---MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVA 177
G +P+ N L+ +Y RCG + A K+F K +N VS N + Y N + A
Sbjct: 121 LTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFA 180
Query: 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237
F H+ + ++P S TF S+
Sbjct: 181 SYA--FPLTTHMAFEY---------------------------------VKPNSSTFTSL 205
Query: 238 LIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIEN 297
+ CA + + G +++ I LG + V +++ MY DL +A+ FD + N +
Sbjct: 206 VQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDA 265
Query: 298 ------LLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERG 351
++G +K D E + + F ML + P +T I+L+ CS L + G
Sbjct: 266 VAWNTMIVGSLKNDKIE------DGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLG 319
Query: 352 KQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH 411
K +HA I +D+ + AL+DMY CG ++ A + RI P+LVS N++++ + +
Sbjct: 320 KLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSEN 379
Query: 412 GHGKEGIAHFRRIL-ASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKH 470
G G++ + +RR+L S RPD +F +A+SA G + + S+
Sbjct: 380 GFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFV 439
Query: 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL- 529
T ++ + + E E+ + + + D V+W ++ V H L ++A IE+
Sbjct: 440 GTTLLSMYFKNRE-AESAQKVFDVMKERDVVLWTEMI---VGHSRLGNSELAVQFFIEMY 495
Query: 530 -EPNNTGNYVMLANLFAYAGRWSDLARTRQ 558
E N + + +L + G SD+A RQ
Sbjct: 496 REKNRSDGF----SLSSVIGACSDMAMLRQ 521
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 176/395 (44%), Gaps = 18/395 (4%)
Query: 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWN--SMISGYVD--NSLYDEAFSM-- 217
N +I Y ++ +AR++FD+M QR I++ S + YV +SL+ + +
Sbjct: 26 NNLISMYVRCSSLEQARKVFDKMP----QRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGS 81
Query: 218 FRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT---FVGGALVE 274
F+ + E S + + C + L++ ++IHAL + G + T + L+
Sbjct: 82 FQMIFFMPLNEIAS-SVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLIS 140
Query: 275 MYCRYQDLVAAQMAFDEI--ENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDI 332
MY R L A+ FD++ N+ + P+ ++ A L + M + P+
Sbjct: 141 MYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASY-AFPLTTHMAFEYVKPNS 199
Query: 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKR 392
T ++ C+ L + G +++ I+ GY +V + T+++ MY+ CG L+ AR +
Sbjct: 200 STFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDC 259
Query: 393 ISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452
++ D V+ N M+ + ++G+ FR +L SG P ++ L+ C GS G
Sbjct: 260 VNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLG 319
Query: 453 SEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVS 512
+ D L ++D+ G++ EA+ +I P+ V W +++ GC
Sbjct: 320 KLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRI-HNPNLVSWNSIISGCSE 378
Query: 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547
+G E + RL+ + Y A + A A
Sbjct: 379 NGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATA 413
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 112/268 (41%), Gaps = 21/268 (7%)
Query: 267 FVGGALVEMYCRYQDLVAAQMAFDEI--ENIENLLGKMKEDGFEPNVYTWNAMQLFSEML 324
+ L+ MY R L A+ FD++ NI L G FE Y L S+++
Sbjct: 23 YANNNLISMYVRCSSLEQARKVFDKMPQRNIVTLFG--LSAVFE---YVSMGSSLHSQII 77
Query: 325 SLDLTPDIY---------TVGIILSACSSLATMERGKQVHAYAIRCGYDSDV---HIGTA 372
L I+ +V + C S+ ++R +Q+HA + G + +
Sbjct: 78 KLGSFQMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNN 137
Query: 373 LVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RP 431
L+ MY +CGSL+ AR + ++ ++VS NA+ +AY+ + +A + +P
Sbjct: 138 LISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKP 197
Query: 432 DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI 491
+ +F S + C + GS + ++ T ++ + S G+L A
Sbjct: 198 NSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIF 257
Query: 492 KKIPMAPDSVMWGALLGGCVSHGNLEFG 519
+ D+V W ++ G + + +E G
Sbjct: 258 DCVN-NRDAVAWNTMIVGSLKNDKIEDG 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,316,611
Number of Sequences: 539616
Number of extensions: 9408010
Number of successful extensions: 32264
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 21349
Number of HSP's gapped (non-prelim): 2982
length of query: 601
length of database: 191,569,459
effective HSP length: 123
effective length of query: 478
effective length of database: 125,196,691
effective search space: 59844018298
effective search space used: 59844018298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)