Query 045105
Match_columns 601
No_of_seqs 566 out of 2776
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 09:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.1E-86 1.1E-90 707.7 62.4 575 1-601 130-758 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.5E-76 3.2E-81 619.8 58.4 510 56-601 84-595 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.5E-71 1.2E-75 591.8 54.9 540 2-569 61-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.4E-68 5.2E-73 559.1 57.1 512 21-570 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-66 2.9E-71 545.9 53.7 490 2-530 380-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.5E-59 5.4E-64 490.0 47.8 504 21-571 85-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-33 9.7E-38 307.0 56.3 537 2-562 339-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-31 2.2E-36 296.2 56.6 540 2-566 305-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.7E-24 3.7E-29 238.6 56.7 539 4-562 40-739 (1157)
10 PRK11447 cellulose synthase su 100.0 5.6E-23 1.2E-27 226.6 54.0 516 2-531 122-742 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 3.5E-21 7.6E-26 202.7 52.8 535 5-564 57-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 6.1E-20 1.3E-24 193.4 52.2 508 25-565 44-674 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.1E-19 2.4E-24 170.2 32.7 446 26-552 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 3.9E-19 8.4E-24 166.6 30.0 426 98-567 52-489 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1E-17 2.3E-22 173.7 44.1 193 369-563 367-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 2.8E-19 6.1E-24 176.3 28.9 304 201-576 41-360 (389)
17 PRK11788 tetratricopeptide rep 99.9 8.6E-19 1.9E-23 172.8 30.3 297 30-368 42-354 (389)
18 KOG2002 TPR-containing nuclear 99.8 4.2E-17 9E-22 161.2 39.8 551 4-566 176-801 (1018)
19 PRK10049 pgaA outer membrane p 99.8 6.6E-17 1.4E-21 170.8 43.6 404 127-565 13-458 (765)
20 PRK15174 Vi polysaccharide exp 99.8 4.3E-17 9.4E-22 168.4 38.3 331 162-534 44-386 (656)
21 PRK14574 hmsH outer membrane p 99.8 9E-16 2E-20 158.8 46.6 180 105-290 45-227 (822)
22 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-16 3.4E-21 165.0 40.3 430 25-532 129-574 (615)
23 KOG4422 Uncharacterized conser 99.8 7E-16 1.5E-20 138.7 38.4 429 59-530 116-591 (625)
24 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.3E-20 158.3 44.7 450 30-535 41-519 (822)
25 PRK15174 Vi polysaccharide exp 99.8 2.1E-16 4.5E-21 163.4 37.7 332 196-567 43-385 (656)
26 KOG4422 Uncharacterized conser 99.8 1.7E-15 3.7E-20 136.2 37.1 423 24-494 117-587 (625)
27 PRK10049 pgaA outer membrane p 99.8 5.2E-16 1.1E-20 164.0 40.1 420 56-536 12-463 (765)
28 KOG2002 TPR-containing nuclear 99.8 6.1E-15 1.3E-19 146.1 43.8 539 8-564 146-746 (1018)
29 KOG2076 RNA polymerase III tra 99.8 1.7E-13 3.7E-18 135.1 45.3 544 5-567 152-853 (895)
30 KOG2003 TPR repeat-containing 99.8 6.6E-15 1.4E-19 133.4 31.1 466 29-549 207-709 (840)
31 KOG0495 HAT repeat protein [RN 99.7 5.5E-12 1.2E-16 120.0 47.0 490 35-576 388-891 (913)
32 KOG2076 RNA polymerase III tra 99.7 9.2E-12 2E-16 123.2 45.2 328 33-397 149-513 (895)
33 KOG4318 Bicoid mRNA stability 99.7 1.3E-12 2.8E-17 128.4 36.2 207 20-246 22-286 (1088)
34 KOG0547 Translocase of outer m 99.6 1.8E-12 3.8E-17 119.2 31.2 374 163-561 118-564 (606)
35 KOG0495 HAT repeat protein [RN 99.6 1.8E-10 3.9E-15 110.0 45.4 467 29-542 412-893 (913)
36 KOG4318 Bicoid mRNA stability 99.6 5.2E-12 1.1E-16 124.3 35.7 487 44-567 11-598 (1088)
37 KOG1915 Cell cycle control pro 99.6 3.5E-10 7.6E-15 104.0 41.9 489 34-560 84-622 (677)
38 PF13429 TPR_15: Tetratricopep 99.6 6.9E-15 1.5E-19 137.1 10.6 256 271-561 13-275 (280)
39 KOG1915 Cell cycle control pro 99.6 2E-10 4.3E-15 105.5 37.7 380 5-427 86-536 (677)
40 KOG2003 TPR repeat-containing 99.5 9.3E-11 2E-15 107.0 30.9 451 64-562 206-688 (840)
41 TIGR00540 hemY_coli hemY prote 99.5 3.6E-11 7.9E-16 118.0 30.1 283 4-290 96-394 (409)
42 KOG1126 DNA-binding cell divis 99.5 1.7E-12 3.7E-17 124.3 19.4 230 329-564 350-587 (638)
43 PRK10747 putative protoheme IX 99.5 5.6E-11 1.2E-15 116.0 30.2 274 5-290 97-385 (398)
44 PRK10747 putative protoheme IX 99.5 1.4E-11 3E-16 120.3 23.9 250 3-259 129-389 (398)
45 KOG3785 Uncharacterized conser 99.5 2E-09 4.4E-14 95.3 34.4 444 30-531 29-492 (557)
46 KOG1126 DNA-binding cell divis 99.5 1.4E-11 3.1E-16 118.0 22.1 283 246-565 334-622 (638)
47 PF13429 TPR_15: Tetratricopep 99.5 2.8E-13 6.1E-18 126.3 10.6 252 30-290 15-272 (280)
48 TIGR00540 hemY_coli hemY prote 99.4 2.8E-10 6E-15 111.8 30.5 79 482-561 313-397 (409)
49 KOG1173 Anaphase-promoting com 99.4 2E-09 4.4E-14 101.4 33.9 266 263-563 241-518 (611)
50 COG2956 Predicted N-acetylgluc 99.4 3E-10 6.6E-15 99.4 24.9 179 402-583 184-367 (389)
51 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.6E-14 98.7 29.5 289 173-529 97-390 (400)
52 KOG1155 Anaphase-promoting com 99.4 3.3E-09 7.2E-14 97.5 31.8 360 159-563 163-536 (559)
53 KOG1155 Anaphase-promoting com 99.4 4E-09 8.7E-14 97.0 32.1 230 327-562 257-494 (559)
54 TIGR02521 type_IV_pilW type IV 99.4 8.4E-11 1.8E-15 107.1 21.9 197 366-563 30-232 (234)
55 COG3071 HemY Uncharacterized e 99.4 2.2E-09 4.7E-14 97.1 29.0 276 5-290 97-385 (400)
56 KOG0547 Translocase of outer m 99.4 2.3E-09 5.1E-14 99.1 29.5 194 335-531 363-568 (606)
57 KOG2047 mRNA splicing factor [ 99.4 3.7E-07 8E-12 87.8 43.9 214 333-549 478-709 (835)
58 KOG3785 Uncharacterized conser 99.3 2.8E-08 6.1E-13 88.3 33.1 454 66-570 29-497 (557)
59 COG2956 Predicted N-acetylgluc 99.3 3E-09 6.6E-14 93.2 26.3 217 36-260 48-278 (389)
60 PF13041 PPR_2: PPR repeat fam 99.3 5E-12 1.1E-16 82.0 6.2 50 57-106 1-50 (50)
61 KOG2376 Signal recognition par 99.3 1.7E-07 3.6E-12 89.3 38.3 456 30-558 19-515 (652)
62 PF13041 PPR_2: PPR repeat fam 99.3 9.1E-12 2E-16 80.8 6.3 50 396-445 1-50 (50)
63 KOG1840 Kinesin light chain [C 99.3 2E-09 4.3E-14 104.6 24.6 231 331-561 198-477 (508)
64 KOG0985 Vesicle coat protein c 99.3 2.1E-06 4.6E-11 86.8 45.0 143 398-560 1104-1246(1666)
65 KOG1173 Anaphase-promoting com 99.3 3.7E-08 8.1E-13 93.2 30.9 478 25-545 18-534 (611)
66 KOG1129 TPR repeat-containing 99.2 4E-10 8.8E-15 98.6 15.0 227 335-565 226-460 (478)
67 KOG1156 N-terminal acetyltrans 99.2 3.7E-06 8E-11 81.4 44.4 421 6-459 55-508 (700)
68 KOG1156 N-terminal acetyltrans 99.2 3.8E-07 8.3E-12 87.9 35.0 441 7-494 22-508 (700)
69 KOG1174 Anaphase-promoting com 99.2 1.7E-07 3.6E-12 85.3 30.7 259 261-537 227-508 (564)
70 TIGR02521 type_IV_pilW type IV 99.2 5.8E-09 1.3E-13 94.9 21.5 194 61-259 33-231 (234)
71 KOG3616 Selective LIM binding 99.2 2.6E-07 5.7E-12 90.0 32.8 210 339-572 798-1033(1636)
72 PF12569 NARP1: NMDA receptor- 99.2 4E-07 8.6E-12 90.0 35.0 251 30-290 11-286 (517)
73 KOG4162 Predicted calmodulin-b 99.2 3.3E-07 7.2E-12 90.1 32.6 127 436-563 653-783 (799)
74 COG3063 PilF Tfp pilus assembl 99.1 7E-09 1.5E-13 86.8 17.7 163 400-565 37-204 (250)
75 PRK12370 invasion protein regu 99.1 6.8E-09 1.5E-13 106.1 21.5 262 21-294 254-534 (553)
76 KOG2047 mRNA splicing factor [ 99.1 1E-05 2.2E-10 78.2 43.5 514 23-561 27-613 (835)
77 KOG3616 Selective LIM binding 99.1 8.3E-07 1.8E-11 86.7 33.2 171 338-526 738-908 (1636)
78 PRK12370 invasion protein regu 99.1 4.5E-08 9.8E-13 100.1 26.0 230 54-292 251-499 (553)
79 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-08 2.9E-13 95.0 20.2 189 369-565 66-267 (296)
80 KOG1840 Kinesin light chain [C 99.1 1E-07 2.2E-12 93.0 25.3 174 194-393 198-393 (508)
81 KOG2376 Signal recognition par 99.0 2.7E-06 5.8E-11 81.4 32.6 221 338-564 230-488 (652)
82 PF12569 NARP1: NMDA receptor- 99.0 1.1E-06 2.4E-11 86.9 29.5 300 134-459 9-331 (517)
83 KOG3617 WD40 and TPR repeat-co 99.0 4E-06 8.8E-11 83.1 32.3 308 32-385 809-1189(1416)
84 KOG1129 TPR repeat-containing 99.0 4.1E-08 8.9E-13 86.3 16.3 222 63-290 227-453 (478)
85 KOG4340 Uncharacterized conser 99.0 3.4E-06 7.3E-11 73.6 27.4 316 26-394 13-337 (459)
86 KOG0985 Vesicle coat protein c 98.9 1.5E-05 3.3E-10 80.9 34.4 458 27-558 842-1365(1666)
87 KOG0548 Molecular co-chaperone 98.9 1E-06 2.2E-11 83.3 24.5 401 137-564 10-456 (539)
88 COG3063 PilF Tfp pilus assembl 98.9 5.3E-07 1.2E-11 75.8 20.2 198 334-533 37-240 (250)
89 PF04733 Coatomer_E: Coatomer 98.9 1.6E-07 3.4E-12 86.4 18.9 156 373-534 108-270 (290)
90 KOG4340 Uncharacterized conser 98.9 2.9E-06 6.3E-11 74.0 25.1 416 60-563 11-443 (459)
91 KOG3617 WD40 and TPR repeat-co 98.9 0.00011 2.4E-09 73.3 39.4 31 535-565 1331-1361(1416)
92 KOG4162 Predicted calmodulin-b 98.9 3.1E-05 6.7E-10 76.8 33.7 378 158-565 321-751 (799)
93 KOG1125 TPR repeat-containing 98.9 7.5E-08 1.6E-12 91.5 15.1 217 342-561 295-525 (579)
94 KOG1127 TPR repeat-containing 98.8 1.6E-05 3.5E-10 80.8 31.4 178 6-188 472-658 (1238)
95 KOG1174 Anaphase-promoting com 98.8 0.0001 2.3E-09 67.7 32.9 303 90-433 190-504 (564)
96 PRK11189 lipoprotein NlpI; Pro 98.8 4.3E-06 9.4E-11 78.2 25.3 231 37-274 40-279 (296)
97 KOG1914 mRNA cleavage and poly 98.8 0.00016 3.4E-09 69.0 36.3 440 21-494 18-536 (656)
98 PRK10370 formate-dependent nit 98.8 5.4E-07 1.2E-11 78.1 17.1 151 405-568 23-178 (198)
99 PRK04841 transcriptional regul 98.8 5.7E-05 1.2E-09 83.6 37.2 367 137-531 349-762 (903)
100 KOG0624 dsRNA-activated protei 98.8 3.5E-05 7.6E-10 68.9 27.8 197 339-538 162-379 (504)
101 KOG0548 Molecular co-chaperone 98.7 9.8E-05 2.1E-09 70.4 31.4 104 31-139 10-114 (539)
102 cd05804 StaR_like StaR_like; a 98.7 4.6E-05 1E-09 74.2 30.3 193 372-564 119-337 (355)
103 KOG1127 TPR repeat-containing 98.7 6.8E-05 1.5E-09 76.5 31.0 450 96-560 494-993 (1238)
104 TIGR03302 OM_YfiO outer membra 98.7 1.5E-06 3.2E-11 78.9 18.1 180 366-564 32-233 (235)
105 cd05804 StaR_like StaR_like; a 98.7 8.9E-05 1.9E-09 72.2 30.9 263 25-291 8-289 (355)
106 PF04733 Coatomer_E: Coatomer 98.7 3.9E-07 8.4E-12 83.8 13.2 218 334-564 37-266 (290)
107 PRK15359 type III secretion sy 98.6 4.7E-07 1E-11 74.2 11.1 94 471-564 27-122 (144)
108 PRK15359 type III secretion sy 98.6 2.5E-06 5.4E-11 69.9 13.5 124 418-546 13-138 (144)
109 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.5E-12 55.0 3.9 32 463-494 2-33 (34)
110 PRK04841 transcriptional regul 98.5 0.00032 6.9E-09 77.8 32.8 302 134-462 414-760 (903)
111 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 5.1E-12 53.7 4.2 32 124-155 2-33 (34)
112 PLN02789 farnesyltranstransfer 98.5 7.8E-05 1.7E-09 69.7 23.0 224 335-561 40-300 (320)
113 COG5010 TadD Flp pilus assembl 98.5 1.8E-05 3.8E-10 68.4 16.4 155 402-558 70-226 (257)
114 COG5010 TadD Flp pilus assembl 98.4 3.1E-05 6.7E-10 67.0 17.5 121 401-523 103-225 (257)
115 KOG1128 Uncharacterized conser 98.4 1.1E-05 2.3E-10 79.4 16.3 186 364-563 395-582 (777)
116 KOG0624 dsRNA-activated protei 98.4 0.0009 2E-08 60.2 26.5 157 58-221 37-215 (504)
117 KOG2053 Mitochondrial inherita 98.4 0.0034 7.3E-08 64.0 44.5 541 5-588 22-633 (932)
118 PRK15363 pathogenicity island 98.4 4E-06 8.6E-11 67.3 10.6 96 469-564 36-133 (157)
119 PRK10370 formate-dependent nit 98.4 3.3E-05 7.2E-10 67.1 17.3 154 374-537 23-181 (198)
120 KOG1128 Uncharacterized conser 98.4 6.1E-05 1.3E-09 74.3 20.4 209 338-564 404-617 (777)
121 PRK15179 Vi polysaccharide bio 98.3 8.7E-05 1.9E-09 76.8 21.4 175 396-579 84-261 (694)
122 KOG1125 TPR repeat-containing 98.3 3.4E-05 7.5E-10 74.0 16.8 212 3-221 296-524 (579)
123 PRK15179 Vi polysaccharide bio 98.3 0.00016 3.5E-09 74.8 22.2 129 363-494 82-214 (694)
124 KOG1070 rRNA processing protei 98.3 8.2E-05 1.8E-09 78.6 19.6 197 366-566 1457-1666(1710)
125 TIGR02552 LcrH_SycD type III s 98.3 1.2E-05 2.6E-10 65.6 11.4 96 469-564 18-115 (135)
126 COG4783 Putative Zn-dependent 98.3 0.00049 1.1E-08 65.1 22.8 111 444-555 317-429 (484)
127 KOG3081 Vesicle coat complex C 98.3 0.00012 2.5E-09 63.4 17.2 150 406-564 116-272 (299)
128 PLN02789 farnesyltranstransfer 98.3 0.0001 2.2E-09 68.9 18.1 189 376-566 46-253 (320)
129 TIGR03302 OM_YfiO outer membra 98.2 0.00016 3.6E-09 65.5 18.9 185 22-223 32-231 (235)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.8E-05 6.1E-10 74.0 14.1 123 435-561 171-295 (395)
131 PRK14720 transcript cleavage f 98.2 0.00051 1.1E-08 72.0 23.7 148 369-545 118-268 (906)
132 COG4783 Putative Zn-dependent 98.2 0.00032 6.8E-09 66.4 19.6 144 405-569 313-460 (484)
133 KOG1070 rRNA processing protei 98.2 0.00046 1E-08 73.2 21.9 228 55-287 1454-1692(1710)
134 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9.1E-11 49.4 4.2 33 61-93 2-34 (35)
135 PF13812 PPR_3: Pentatricopept 98.1 4.6E-06 9.9E-11 48.8 4.2 33 60-92 2-34 (34)
136 KOG3081 Vesicle coat complex C 98.1 0.0014 3.1E-08 56.9 20.6 238 30-282 15-257 (299)
137 PRK14720 transcript cleavage f 98.1 0.0006 1.3E-08 71.5 21.8 150 21-188 29-197 (906)
138 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 48.7 4.3 33 400-432 2-34 (35)
139 KOG3060 Uncharacterized conser 98.1 0.00095 2.1E-08 57.6 18.6 197 345-543 25-234 (289)
140 TIGR02552 LcrH_SycD type III s 98.1 0.00013 2.7E-09 59.5 13.1 113 420-535 5-120 (135)
141 PF12895 Apc3: Anaphase-promot 98.1 5.3E-06 1.2E-10 60.9 4.3 78 481-559 2-83 (84)
142 TIGR02795 tol_pal_ybgF tol-pal 98.1 5.6E-05 1.2E-09 60.0 10.5 96 470-565 4-107 (119)
143 PF13432 TPR_16: Tetratricopep 98.0 1.2E-05 2.7E-10 55.5 5.7 60 506-565 3-62 (65)
144 PF13414 TPR_11: TPR repeat; P 98.0 1.4E-05 3.1E-10 56.0 6.0 66 499-564 2-68 (69)
145 PF13812 PPR_3: Pentatricopept 98.0 9.4E-06 2E-10 47.4 4.2 33 399-431 2-34 (34)
146 cd00189 TPR Tetratricopeptide 98.0 6.3E-05 1.4E-09 56.9 10.0 94 471-564 3-98 (100)
147 KOG3060 Uncharacterized conser 98.0 0.00082 1.8E-08 57.9 17.0 166 400-568 54-225 (289)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00019 4.2E-09 68.5 14.6 127 369-497 171-297 (395)
149 COG4235 Cytochrome c biogenesi 98.0 0.0001 2.2E-09 65.6 11.7 108 465-572 153-265 (287)
150 PF09976 TPR_21: Tetratricopep 98.0 0.00043 9.4E-09 57.0 14.6 114 411-525 24-143 (145)
151 PF07079 DUF1347: Protein of u 97.9 0.025 5.3E-07 53.5 35.8 452 4-505 18-530 (549)
152 PLN03088 SGT1, suppressor of 97.9 0.00013 2.7E-09 70.1 10.9 107 440-547 9-117 (356)
153 PF14559 TPR_19: Tetratricopep 97.9 2.6E-05 5.6E-10 54.5 4.7 55 511-565 2-56 (68)
154 PF13371 TPR_9: Tetratricopept 97.8 6.3E-05 1.4E-09 53.4 6.6 59 507-565 2-60 (73)
155 KOG2053 Mitochondrial inherita 97.8 0.053 1.2E-06 55.8 43.6 221 34-262 20-257 (932)
156 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.5E-08 54.4 14.3 113 72-185 24-143 (145)
157 COG4700 Uncharacterized protei 97.8 0.0047 1E-07 50.6 16.7 133 429-562 85-221 (251)
158 PF08579 RPM2: Mitochondrial r 97.8 0.00028 6.2E-09 52.5 9.1 78 64-141 30-116 (120)
159 KOG1914 mRNA cleavage and poly 97.8 0.042 9E-07 53.2 36.5 159 399-560 367-536 (656)
160 PF10037 MRP-S27: Mitochondria 97.8 0.00042 9.1E-09 66.5 12.8 120 159-279 65-186 (429)
161 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00046 1E-08 54.7 11.2 104 435-538 4-114 (119)
162 PF07079 DUF1347: Protein of u 97.8 0.039 8.4E-07 52.2 36.9 71 489-560 445-521 (549)
163 PF04840 Vps16_C: Vps16, C-ter 97.7 0.039 8.4E-07 51.7 26.2 105 401-522 180-284 (319)
164 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.2E-10 43.5 3.5 29 61-89 2-30 (31)
165 KOG0553 TPR repeat-containing 97.7 0.00012 2.5E-09 64.8 7.4 102 441-543 89-192 (304)
166 PF08579 RPM2: Mitochondrial r 97.7 0.00025 5.5E-09 52.7 7.8 78 164-242 29-115 (120)
167 PRK02603 photosystem I assembl 97.7 0.0005 1.1E-08 58.6 10.9 95 470-564 37-150 (172)
168 PF01535 PPR: PPR repeat; Int 97.7 6.5E-05 1.4E-09 42.7 3.5 29 162-190 2-30 (31)
169 PF10037 MRP-S27: Mitochondria 97.6 0.00064 1.4E-08 65.3 11.9 116 26-141 69-185 (429)
170 KOG0553 TPR repeat-containing 97.6 0.00071 1.5E-08 60.0 10.1 100 406-509 89-191 (304)
171 PLN03088 SGT1, suppressor of 97.6 0.0011 2.5E-08 63.6 12.5 101 405-507 9-110 (356)
172 PF13432 TPR_16: Tetratricopep 97.6 0.00022 4.7E-09 49.2 5.7 61 474-534 3-65 (65)
173 KOG2796 Uncharacterized conser 97.6 0.0042 9.1E-08 53.9 14.1 134 437-570 181-322 (366)
174 PF14938 SNAP: Soluble NSF att 97.5 0.021 4.5E-07 53.1 19.7 103 401-504 158-272 (282)
175 PF06239 ECSIT: Evolutionarily 97.5 0.0017 3.7E-08 55.1 10.8 113 12-144 34-153 (228)
176 PRK10153 DNA-binding transcrip 97.5 0.005 1.1E-07 61.9 16.1 139 394-534 333-487 (517)
177 CHL00033 ycf3 photosystem I as 97.5 0.0011 2.4E-08 56.3 9.9 93 468-560 35-139 (168)
178 PRK02603 photosystem I assembl 97.5 0.0031 6.7E-08 53.7 12.7 131 397-549 34-166 (172)
179 PRK10866 outer membrane biogen 97.4 0.025 5.5E-07 50.9 18.8 174 373-561 38-239 (243)
180 cd00189 TPR Tetratricopeptide 97.4 0.0016 3.5E-08 48.8 9.7 94 26-122 3-96 (100)
181 PRK15331 chaperone protein Sic 97.4 0.0015 3.2E-08 53.0 9.4 88 475-562 44-133 (165)
182 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3E-09 42.0 2.6 33 523-555 2-34 (34)
183 PF14938 SNAP: Soluble NSF att 97.4 0.025 5.5E-07 52.6 19.0 164 201-405 100-275 (282)
184 PF12688 TPR_5: Tetratrico pep 97.4 0.0029 6.2E-08 49.3 10.4 88 474-561 7-102 (120)
185 PF12895 Apc3: Anaphase-promot 97.4 0.00042 9.1E-09 50.7 5.6 81 411-493 2-83 (84)
186 PF06239 ECSIT: Evolutionarily 97.4 0.00094 2E-08 56.6 8.1 88 157-245 44-152 (228)
187 PF05843 Suf: Suppressor of fo 97.3 0.0064 1.4E-07 56.3 13.5 132 399-532 2-139 (280)
188 PRK10803 tol-pal system protei 97.3 0.0023 5E-08 58.0 10.0 86 479-564 154-247 (263)
189 PF14559 TPR_19: Tetratricopep 97.2 0.00099 2.1E-08 46.4 5.5 63 34-100 2-64 (68)
190 KOG2041 WD40 repeat protein [G 97.2 0.31 6.8E-06 48.9 25.7 116 126-254 689-819 (1189)
191 PF13414 TPR_11: TPR repeat; P 97.2 0.00061 1.3E-08 47.6 4.3 64 468-531 3-69 (69)
192 PF13281 DUF4071: Domain of un 97.2 0.22 4.8E-06 47.2 22.2 161 372-534 146-339 (374)
193 KOG1538 Uncharacterized conser 97.2 0.064 1.4E-06 53.0 18.9 79 340-427 755-846 (1081)
194 KOG1538 Uncharacterized conser 97.1 0.11 2.4E-06 51.5 20.1 86 434-528 748-845 (1081)
195 PF13428 TPR_14: Tetratricopep 97.1 0.00081 1.8E-08 41.8 4.0 42 501-542 2-43 (44)
196 PRK10153 DNA-binding transcrip 97.1 0.02 4.3E-07 57.7 15.9 136 428-566 332-485 (517)
197 PF05843 Suf: Suppressor of fo 97.1 0.005 1.1E-07 57.0 10.9 127 61-189 3-136 (280)
198 CHL00033 ycf3 photosystem I as 97.0 0.013 2.8E-07 49.7 11.9 63 25-87 37-100 (168)
199 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0035 7.7E-08 59.8 8.6 65 499-563 74-141 (453)
200 PRK10866 outer membrane biogen 97.0 0.051 1.1E-06 49.0 15.7 180 65-258 38-239 (243)
201 PRK15363 pathogenicity island 96.9 0.015 3.3E-07 47.1 10.6 95 26-123 38-132 (157)
202 COG4700 Uncharacterized protei 96.9 0.17 3.7E-06 41.9 16.4 100 90-189 85-189 (251)
203 PF13371 TPR_9: Tetratricopept 96.9 0.0028 6.1E-08 44.8 5.9 63 476-538 3-67 (73)
204 PF03704 BTAD: Bacterial trans 96.9 0.0033 7.2E-08 51.9 6.9 69 502-570 64-137 (146)
205 KOG0550 Molecular chaperone (D 96.9 0.39 8.6E-06 45.2 22.2 86 342-427 259-350 (486)
206 PF12688 TPR_5: Tetratrico pep 96.8 0.04 8.7E-07 43.0 11.9 106 404-510 7-116 (120)
207 PF13424 TPR_12: Tetratricopep 96.8 0.0021 4.5E-08 46.2 4.4 62 501-562 6-74 (78)
208 KOG1130 Predicted G-alpha GTPa 96.8 0.011 2.4E-07 54.8 9.8 258 276-561 27-342 (639)
209 PF13512 TPR_18: Tetratricopep 96.8 0.043 9.3E-07 43.7 11.6 90 475-564 17-129 (142)
210 PF03704 BTAD: Bacterial trans 96.7 0.0058 1.3E-07 50.4 7.2 66 29-96 68-138 (146)
211 KOG0550 Molecular chaperone (D 96.7 0.12 2.6E-06 48.5 15.5 81 480-560 261-347 (486)
212 PRK10803 tol-pal system protei 96.6 0.03 6.4E-07 50.9 11.4 101 435-535 145-252 (263)
213 COG3898 Uncharacterized membra 96.6 0.62 1.4E-05 43.5 23.3 272 5-290 97-387 (531)
214 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.89 1.9E-05 43.4 30.5 128 402-531 401-533 (660)
215 PF04840 Vps16_C: Vps16, C-ter 96.4 0.83 1.8E-05 43.0 28.1 121 371-510 181-301 (319)
216 PF13525 YfiO: Outer membrane 96.4 0.15 3.2E-06 44.8 14.2 162 376-555 14-199 (203)
217 KOG4555 TPR repeat-containing 96.3 0.026 5.6E-07 43.4 7.6 89 477-565 52-146 (175)
218 KOG2796 Uncharacterized conser 96.3 0.22 4.8E-06 43.7 14.0 151 76-237 166-325 (366)
219 COG4235 Cytochrome c biogenesi 96.2 0.23 4.9E-06 44.9 14.0 105 430-535 153-262 (287)
220 PF09205 DUF1955: Domain of un 96.1 0.5 1.1E-05 36.8 14.9 141 408-566 12-152 (161)
221 PF13525 YfiO: Outer membrane 96.0 0.42 9.2E-06 41.9 15.2 60 29-88 11-71 (203)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.5 3.2E-05 42.0 34.7 427 13-461 30-530 (660)
223 KOG2114 Vacuolar assembly/sort 96.0 2.3 5E-05 44.2 24.3 177 25-222 336-517 (933)
224 COG3898 Uncharacterized membra 96.0 1.4 2.9E-05 41.4 27.8 214 340-563 162-392 (531)
225 PF12921 ATP13: Mitochondrial 96.0 0.12 2.6E-06 40.8 10.3 84 22-105 1-99 (126)
226 PRK11906 transcriptional regul 96.0 0.1 2.2E-06 50.3 11.6 154 402-557 257-430 (458)
227 PF13424 TPR_12: Tetratricopep 95.9 0.012 2.5E-07 42.3 4.0 60 470-529 7-75 (78)
228 PF12921 ATP13: Mitochondrial 95.9 0.079 1.7E-06 41.8 8.8 95 160-275 2-97 (126)
229 PF13281 DUF4071: Domain of un 95.9 1.3 2.9E-05 42.1 18.1 158 130-290 142-329 (374)
230 KOG0543 FKBP-type peptidyl-pro 95.8 0.036 7.9E-07 51.8 7.6 125 440-564 215-356 (397)
231 KOG2041 WD40 repeat protein [G 95.8 2.6 5.6E-05 42.8 31.3 119 56-185 689-821 (1189)
232 COG3118 Thioredoxin domain-con 95.7 0.86 1.9E-05 41.2 15.2 116 444-561 145-263 (304)
233 COG1729 Uncharacterized protei 95.7 0.092 2E-06 46.7 9.3 84 480-565 153-246 (262)
234 smart00299 CLH Clathrin heavy 95.6 0.93 2E-05 36.9 14.6 89 23-120 7-95 (140)
235 KOG0543 FKBP-type peptidyl-pro 95.6 0.13 2.7E-06 48.4 10.2 127 404-531 214-357 (397)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.077 1.7E-06 51.0 8.8 62 468-529 75-141 (453)
237 TIGR02561 HrpB1_HrpK type III 95.2 0.17 3.6E-06 40.4 8.3 52 513-564 23-74 (153)
238 PF09613 HrpB1_HrpK: Bacterial 95.2 0.18 3.9E-06 41.1 8.6 82 470-551 9-95 (160)
239 smart00299 CLH Clathrin heavy 95.1 1.3 2.8E-05 36.0 14.0 45 62-107 10-54 (140)
240 KOG3941 Intermediate in Toll s 95.1 0.13 2.8E-06 45.6 8.1 112 150-281 55-173 (406)
241 KOG3941 Intermediate in Toll s 95.1 0.17 3.8E-06 44.8 8.9 34 111-144 140-173 (406)
242 COG4105 ComL DNA uptake lipopr 95.1 2.3 5E-05 37.8 18.1 170 378-561 45-231 (254)
243 KOG1130 Predicted G-alpha GTPa 95.0 0.28 6.1E-06 46.0 10.4 93 334-426 237-343 (639)
244 KOG4555 TPR repeat-containing 94.9 0.77 1.7E-05 35.6 10.7 92 31-124 51-145 (175)
245 PF10345 Cohesin_load: Cohesin 94.9 6 0.00013 41.6 32.2 183 379-561 373-604 (608)
246 PRK11906 transcriptional regul 94.9 1.2 2.6E-05 43.3 14.5 111 415-529 321-436 (458)
247 COG0457 NrfG FOG: TPR repeat [ 94.8 2.7 6E-05 37.5 24.5 216 347-565 38-267 (291)
248 KOG2114 Vacuolar assembly/sort 94.8 1.5 3.2E-05 45.5 15.6 76 378-456 379-454 (933)
249 PF07719 TPR_2: Tetratricopept 94.8 0.086 1.9E-06 30.2 4.5 31 502-532 3-33 (34)
250 KOG1941 Acetylcholine receptor 94.8 0.4 8.6E-06 44.3 10.5 192 368-559 44-271 (518)
251 COG3118 Thioredoxin domain-con 94.8 3 6.5E-05 37.8 15.7 54 32-87 143-196 (304)
252 PF04053 Coatomer_WDAD: Coatom 94.7 1.3 2.9E-05 43.8 14.8 157 31-220 269-427 (443)
253 PF04097 Nic96: Nup93/Nic96; 94.6 3.8 8.3E-05 42.9 18.9 213 61-290 113-351 (613)
254 KOG2610 Uncharacterized conser 94.6 3 6.4E-05 38.4 15.3 146 36-185 116-272 (491)
255 KOG4234 TPR repeat-containing 94.6 0.13 2.8E-06 43.1 6.4 125 441-565 103-235 (271)
256 KOG2610 Uncharacterized conser 94.4 0.44 9.6E-06 43.5 9.9 159 410-570 115-283 (491)
257 PF00515 TPR_1: Tetratricopept 94.4 0.086 1.9E-06 30.2 3.8 31 502-532 3-33 (34)
258 COG1729 Uncharacterized protei 94.4 0.5 1.1E-05 42.2 10.1 102 435-537 144-252 (262)
259 KOG2280 Vacuolar assembly/sort 94.4 7.2 0.00016 40.2 37.3 153 70-223 400-574 (829)
260 COG3629 DnrI DNA-binding trans 94.3 0.22 4.8E-06 45.1 7.8 59 503-561 156-214 (280)
261 PF10300 DUF3808: Protein of u 94.0 3.1 6.8E-05 41.9 16.3 158 402-561 192-374 (468)
262 PRK15331 chaperone protein Sic 93.9 1.5 3.3E-05 36.0 11.2 85 408-494 47-131 (165)
263 PF09205 DUF1955: Domain of un 93.9 2.5 5.3E-05 33.1 11.8 115 345-463 15-150 (161)
264 PF02259 FAT: FAT domain; Int 93.9 2.6 5.7E-05 40.8 15.4 68 498-565 144-215 (352)
265 PF04053 Coatomer_WDAD: Coatom 93.7 4.1 8.8E-05 40.5 15.9 104 375-495 326-429 (443)
266 COG3629 DnrI DNA-binding trans 93.7 0.57 1.2E-05 42.5 9.2 77 25-103 155-236 (280)
267 KOG1920 IkappaB kinase complex 93.6 14 0.0003 40.6 23.6 79 440-526 972-1052(1265)
268 PF07035 Mic1: Colon cancer-as 93.5 3.8 8.3E-05 34.1 15.4 30 81-110 16-45 (167)
269 PF13176 TPR_7: Tetratricopept 93.4 0.17 3.7E-06 29.5 3.8 26 536-561 1-26 (36)
270 PF08631 SPO22: Meiosis protei 93.3 6.7 0.00015 36.4 22.2 15 276-290 256-270 (278)
271 PF10300 DUF3808: Protein of u 93.3 3.2 6.9E-05 41.8 14.9 174 42-223 176-375 (468)
272 PF04184 ST7: ST7 protein; In 93.3 1.3 2.9E-05 43.1 11.3 96 437-532 263-378 (539)
273 KOG1941 Acetylcholine receptor 93.2 1.9 4E-05 40.1 11.5 129 401-529 125-275 (518)
274 PF13428 TPR_14: Tetratricopep 93.0 0.27 5.8E-06 30.3 4.5 26 26-51 4-29 (44)
275 KOG1585 Protein required for f 93.0 5.9 0.00013 34.9 13.6 206 25-253 33-249 (308)
276 COG4649 Uncharacterized protei 92.9 3.5 7.5E-05 34.1 11.5 119 70-188 69-195 (221)
277 COG4649 Uncharacterized protei 92.8 4.9 0.00011 33.3 13.3 115 171-290 69-191 (221)
278 KOG1585 Protein required for f 92.8 6.5 0.00014 34.6 15.1 201 334-558 33-251 (308)
279 PF13512 TPR_18: Tetratricopep 92.5 4.5 9.8E-05 32.5 11.7 79 29-107 16-95 (142)
280 PF04184 ST7: ST7 protein; In 92.5 5 0.00011 39.4 13.9 63 500-562 259-323 (539)
281 COG0457 NrfG FOG: TPR repeat [ 92.4 7.5 0.00016 34.5 22.9 199 332-532 59-268 (291)
282 PF07035 Mic1: Colon cancer-as 92.4 5.7 0.00012 33.1 15.2 134 115-261 15-150 (167)
283 KOG2280 Vacuolar assembly/sort 92.4 15 0.00033 38.0 35.3 137 122-259 425-574 (829)
284 PF13170 DUF4003: Protein of u 92.3 9.7 0.00021 35.5 17.3 128 348-477 78-226 (297)
285 PF07721 TPR_4: Tetratricopept 92.1 0.22 4.9E-06 26.4 2.8 24 535-558 2-25 (26)
286 PF00637 Clathrin: Region in C 92.0 0.02 4.4E-07 46.9 -2.0 83 338-423 13-95 (143)
287 PF07719 TPR_2: Tetratricopept 91.9 0.27 5.8E-06 28.0 3.3 30 535-564 2-31 (34)
288 KOG0890 Protein kinase of the 91.9 34 0.00073 40.9 29.5 64 500-565 1670-1733(2382)
289 PRK11619 lytic murein transgly 91.9 19 0.00041 38.0 29.7 116 411-528 254-374 (644)
290 PF09613 HrpB1_HrpK: Bacterial 91.8 5.8 0.00013 32.6 11.6 94 31-128 18-111 (160)
291 PF13181 TPR_8: Tetratricopept 91.7 0.33 7.1E-06 27.7 3.5 30 502-531 3-32 (34)
292 PF13176 TPR_7: Tetratricopept 91.6 0.34 7.4E-06 28.2 3.5 28 502-529 1-28 (36)
293 COG4785 NlpI Lipoprotein NlpI, 91.1 9.5 0.00021 33.0 12.6 156 398-563 99-266 (297)
294 PF00515 TPR_1: Tetratricopept 91.0 0.39 8.4E-06 27.4 3.3 31 535-565 2-32 (34)
295 PF13174 TPR_6: Tetratricopept 90.9 0.38 8.2E-06 27.1 3.2 28 537-564 3-30 (33)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 2.4 5.3E-05 31.0 7.5 65 308-374 18-83 (103)
297 PF10602 RPN7: 26S proteasome 90.6 3.4 7.4E-05 35.1 10.0 95 400-494 38-139 (177)
298 PF00637 Clathrin: Region in C 89.7 0.48 1E-05 38.7 4.1 84 100-186 13-96 (143)
299 KOG1258 mRNA processing protei 89.6 25 0.00055 35.5 31.1 36 513-548 454-489 (577)
300 PF08631 SPO22: Meiosis protei 89.5 18 0.00038 33.6 23.5 60 334-394 86-148 (278)
301 PF02284 COX5A: Cytochrome c o 89.3 3.7 8E-05 30.5 7.6 67 308-375 21-87 (108)
302 PF02259 FAT: FAT domain; Int 89.3 22 0.00047 34.4 22.2 150 396-547 144-305 (352)
303 KOG1920 IkappaB kinase complex 89.3 39 0.00085 37.3 24.1 115 365-495 933-1053(1265)
304 KOG2063 Vacuolar assembly/sort 88.7 23 0.00051 38.2 16.1 117 25-141 506-638 (877)
305 PF13374 TPR_10: Tetratricopep 88.6 0.88 1.9E-05 27.3 3.8 29 535-563 3-31 (42)
306 KOG4648 Uncharacterized conser 88.6 0.97 2.1E-05 41.5 5.3 93 440-535 104-200 (536)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 88.3 3 6.5E-05 30.6 6.5 48 494-541 36-83 (103)
308 KOG4234 TPR repeat-containing 88.3 7.8 0.00017 33.0 9.9 94 405-501 102-202 (271)
309 TIGR03504 FimV_Cterm FimV C-te 88.2 1 2.2E-05 27.7 3.6 27 538-564 3-29 (44)
310 PF02284 COX5A: Cytochrome c o 88.1 3.4 7.3E-05 30.7 6.8 50 493-542 38-87 (108)
311 PRK10941 hypothetical protein; 87.8 2.7 5.8E-05 38.4 7.8 64 502-565 183-246 (269)
312 PF13181 TPR_8: Tetratricopept 87.7 1.2 2.5E-05 25.3 3.7 30 535-564 2-31 (34)
313 PF13929 mRNA_stabil: mRNA sta 87.6 23 0.00049 32.5 20.8 134 143-276 142-288 (292)
314 PF10602 RPN7: 26S proteasome 87.6 6.3 0.00014 33.5 9.5 63 60-122 37-101 (177)
315 PRK09687 putative lyase; Provi 87.4 24 0.00053 32.7 25.4 242 14-275 28-276 (280)
316 COG4785 NlpI Lipoprotein NlpI, 87.4 18 0.0004 31.3 14.3 30 59-88 99-128 (297)
317 PF11207 DUF2989: Protein of u 87.3 3.8 8.1E-05 35.1 7.7 75 479-554 118-198 (203)
318 PF13174 TPR_6: Tetratricopept 87.1 1.1 2.5E-05 25.0 3.4 28 505-532 5-32 (33)
319 PF14561 TPR_20: Tetratricopep 87.0 2.2 4.8E-05 31.3 5.6 44 521-564 9-52 (90)
320 PF13431 TPR_17: Tetratricopep 86.9 0.62 1.3E-05 26.7 2.1 26 54-79 8-33 (34)
321 PF13170 DUF4003: Protein of u 86.3 29 0.00063 32.4 16.7 88 176-265 78-177 (297)
322 TIGR02561 HrpB1_HrpK type III 85.9 17 0.00037 29.4 11.4 55 33-89 20-74 (153)
323 KOG4570 Uncharacterized conser 85.9 6.6 0.00014 36.0 8.8 97 361-461 58-164 (418)
324 KOG4642 Chaperone-dependent E3 85.5 3.4 7.3E-05 36.2 6.6 82 480-561 22-105 (284)
325 KOG4570 Uncharacterized conser 85.4 8 0.00017 35.4 9.1 96 26-123 67-164 (418)
326 COG4105 ComL DNA uptake lipopr 85.4 27 0.00059 31.3 20.2 65 166-230 40-106 (254)
327 COG4455 ImpE Protein of avirul 85.1 6.9 0.00015 33.8 8.1 77 25-103 3-81 (273)
328 COG2976 Uncharacterized protei 84.8 24 0.00051 30.2 11.5 87 441-531 97-190 (207)
329 PF13374 TPR_10: Tetratricopep 84.5 2.3 4.9E-05 25.4 4.1 29 501-529 3-31 (42)
330 KOG0276 Vesicle coat complex C 84.4 26 0.00056 35.5 12.7 44 445-494 649-692 (794)
331 PF14853 Fis1_TPR_C: Fis1 C-te 84.4 2.4 5.2E-05 27.3 4.1 34 505-538 6-39 (53)
332 KOG2066 Vacuolar assembly/sort 84.2 59 0.0013 34.2 23.9 102 30-141 363-467 (846)
333 KOG1586 Protein required for f 84.2 29 0.00062 30.6 17.0 19 514-532 209-227 (288)
334 COG2909 MalT ATP-dependent tra 83.6 68 0.0015 34.4 21.6 216 341-559 424-684 (894)
335 COG4455 ImpE Protein of avirul 82.8 4.1 8.9E-05 35.1 5.9 74 470-543 3-81 (273)
336 KOG4648 Uncharacterized conser 82.7 2.2 4.7E-05 39.3 4.6 89 476-564 105-195 (536)
337 PF04910 Tcf25: Transcriptiona 82.5 34 0.00074 33.1 12.9 64 499-562 99-167 (360)
338 smart00028 TPR Tetratricopepti 81.5 3.1 6.7E-05 22.5 3.7 26 536-561 3-28 (34)
339 PF10345 Cohesin_load: Cohesin 81.0 80 0.0017 33.4 31.2 150 5-155 73-251 (608)
340 KOG0276 Vesicle coat complex C 80.7 13 0.00028 37.5 9.2 148 5-185 599-746 (794)
341 PRK15180 Vi polysaccharide bio 80.4 27 0.00058 34.2 11.0 120 410-532 301-423 (831)
342 COG1747 Uncharacterized N-term 80.0 68 0.0015 32.0 19.7 176 365-545 64-250 (711)
343 smart00028 TPR Tetratricopepti 79.9 3.8 8.1E-05 22.1 3.7 31 501-531 2-32 (34)
344 KOG4507 Uncharacterized conser 78.7 7.6 0.00016 38.8 7.0 100 445-545 619-721 (886)
345 TIGR02508 type_III_yscG type I 78.3 25 0.00055 26.1 9.3 87 347-437 20-106 (115)
346 COG2976 Uncharacterized protei 77.3 46 0.00099 28.5 13.2 85 137-223 97-187 (207)
347 KOG1258 mRNA processing protei 77.2 89 0.0019 31.9 30.7 142 22-166 44-188 (577)
348 PF12862 Apc5: Anaphase-promot 77.0 9.2 0.0002 28.4 5.8 53 510-562 8-69 (94)
349 KOG1586 Protein required for f 76.8 53 0.0012 29.1 14.6 93 473-565 118-226 (288)
350 PF11207 DUF2989: Protein of u 76.7 26 0.00057 30.1 8.9 68 111-179 123-197 (203)
351 PF13762 MNE1: Mitochondrial s 76.0 36 0.00079 27.6 9.1 50 397-446 78-128 (145)
352 KOG0376 Serine-threonine phosp 75.5 2.9 6.2E-05 40.7 3.3 98 441-540 12-112 (476)
353 KOG2066 Vacuolar assembly/sort 75.2 1.2E+02 0.0025 32.2 24.3 138 129-290 392-529 (846)
354 KOG1308 Hsp70-interacting prot 75.1 2.2 4.8E-05 39.4 2.3 116 444-561 125-242 (377)
355 KOG3364 Membrane protein invol 75.1 32 0.0007 27.3 8.2 72 465-536 29-107 (149)
356 TIGR02508 type_III_yscG type I 75.0 32 0.0007 25.6 7.7 78 110-190 21-98 (115)
357 PF04190 DUF410: Protein of un 74.3 71 0.0015 29.3 14.4 81 467-563 89-170 (260)
358 PF10579 Rapsyn_N: Rapsyn N-te 73.7 10 0.00023 26.7 4.7 47 410-456 18-66 (80)
359 COG3947 Response regulator con 73.5 13 0.00028 33.8 6.5 58 503-560 282-339 (361)
360 PF09986 DUF2225: Uncharacteri 72.8 26 0.00056 30.9 8.3 66 502-567 120-198 (214)
361 PF10579 Rapsyn_N: Rapsyn N-te 72.8 8.7 0.00019 27.1 4.2 45 512-556 18-65 (80)
362 KOG2063 Vacuolar assembly/sort 72.3 87 0.0019 34.1 13.2 85 477-561 600-711 (877)
363 KOG0991 Replication factor C, 70.9 76 0.0016 28.1 10.2 90 342-434 169-274 (333)
364 PRK09687 putative lyase; Provi 70.9 90 0.002 29.0 26.3 58 366-426 205-262 (280)
365 PRK10941 hypothetical protein; 70.6 18 0.00039 33.1 7.1 67 472-538 185-253 (269)
366 COG3947 Response regulator con 69.8 24 0.00053 32.1 7.3 58 62-120 282-339 (361)
367 PF13762 MNE1: Mitochondrial s 69.7 59 0.0013 26.4 10.0 83 25-107 41-128 (145)
368 COG4976 Predicted methyltransf 69.1 9.4 0.0002 33.3 4.5 54 512-565 7-60 (287)
369 KOG4507 Uncharacterized conser 68.5 42 0.00091 33.9 9.2 134 430-565 568-707 (886)
370 KOG3807 Predicted membrane pro 68.4 67 0.0015 29.9 9.9 48 407-456 284-334 (556)
371 PF04910 Tcf25: Transcriptiona 68.2 1.2E+02 0.0026 29.4 16.7 55 440-494 110-165 (360)
372 TIGR03504 FimV_Cterm FimV C-te 67.9 15 0.00032 22.6 4.0 25 404-428 5-29 (44)
373 smart00386 HAT HAT (Half-A-TPR 67.8 9.9 0.00021 20.8 3.3 30 514-543 1-30 (33)
374 KOG1464 COP9 signalosome, subu 67.7 96 0.0021 28.1 17.8 91 196-286 146-251 (440)
375 PF07163 Pex26: Pex26 protein; 67.2 58 0.0013 29.7 9.1 120 33-152 45-181 (309)
376 cd08819 CARD_MDA5_2 Caspase ac 66.9 46 0.001 24.1 7.0 65 114-180 22-86 (88)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 66.6 44 0.00095 26.5 7.7 43 77-119 81-124 (126)
378 KOG2034 Vacuolar sorting prote 66.0 2E+02 0.0043 31.1 21.8 35 247-281 609-643 (911)
379 PF14561 TPR_20: Tetratricopep 65.7 50 0.0011 24.3 7.3 53 499-551 21-75 (90)
380 KOG3364 Membrane protein invol 65.1 35 0.00075 27.2 6.5 68 497-564 29-101 (149)
381 PRK11619 lytic murein transgly 65.1 2E+02 0.0042 30.7 38.1 136 70-212 44-180 (644)
382 KOG2422 Uncharacterized conser 64.5 1.1E+02 0.0024 31.2 11.2 64 508-571 350-416 (665)
383 PF14863 Alkyl_sulf_dimr: Alky 64.5 33 0.00072 27.8 6.6 64 484-550 57-120 (141)
384 KOG0545 Aryl-hydrocarbon recep 63.3 52 0.0011 29.3 7.9 55 510-564 240-294 (329)
385 PF11838 ERAP1_C: ERAP1-like C 63.0 1.3E+02 0.0028 28.5 12.0 83 39-124 146-231 (324)
386 KOG4077 Cytochrome c oxidase, 62.9 37 0.0008 26.5 6.1 48 493-540 77-124 (149)
387 PF11846 DUF3366: Domain of un 62.6 27 0.0006 30.2 6.5 36 496-531 140-175 (193)
388 PF06552 TOM20_plant: Plant sp 62.5 12 0.00026 31.4 3.8 65 496-568 64-141 (186)
389 PF09670 Cas_Cas02710: CRISPR- 62.3 1.3E+02 0.0027 29.6 11.5 52 408-460 141-196 (379)
390 KOG0890 Protein kinase of the 62.2 3.8E+02 0.0082 33.0 29.3 113 134-255 1388-1507(2382)
391 KOG0551 Hsp90 co-chaperone CNS 61.9 27 0.00058 32.6 6.2 86 475-560 88-179 (390)
392 KOG4077 Cytochrome c oxidase, 61.8 49 0.0011 25.9 6.6 54 308-361 60-113 (149)
393 PF13934 ELYS: Nuclear pore co 61.6 1.1E+02 0.0025 27.2 10.2 107 400-514 78-186 (226)
394 PF07163 Pex26: Pex26 protein; 61.2 95 0.002 28.4 9.3 21 202-222 125-145 (309)
395 PRK12798 chemotaxis protein; R 60.8 1.7E+02 0.0037 28.6 22.0 178 380-560 125-321 (421)
396 PF14669 Asp_Glu_race_2: Putat 60.5 1.1E+02 0.0024 26.2 13.7 26 265-290 180-205 (233)
397 KOG4279 Serine/threonine prote 59.8 2.4E+02 0.0052 30.0 13.9 212 250-534 182-400 (1226)
398 PF14853 Fis1_TPR_C: Fis1 C-te 59.7 21 0.00045 23.0 3.8 29 537-565 4-32 (53)
399 cd00280 TRFH Telomeric Repeat 59.6 55 0.0012 27.7 7.1 66 39-108 85-157 (200)
400 PF09477 Type_III_YscG: Bacter 59.6 76 0.0016 24.1 9.2 88 345-436 19-106 (116)
401 PF11848 DUF3368: Domain of un 58.1 39 0.00085 21.2 4.8 31 71-101 14-44 (48)
402 COG2912 Uncharacterized conser 57.9 37 0.0008 30.8 6.4 59 505-563 186-244 (269)
403 PHA02875 ankyrin repeat protei 57.8 2E+02 0.0044 28.5 17.5 19 136-154 72-90 (413)
404 COG2909 MalT ATP-dependent tra 57.7 2.8E+02 0.0061 30.1 29.6 227 241-494 425-685 (894)
405 COG5159 RPN6 26S proteasome re 57.1 1.6E+02 0.0034 27.1 12.9 160 404-563 9-194 (421)
406 PF10255 Paf67: RNA polymerase 56.4 69 0.0015 31.4 8.4 60 502-561 124-191 (404)
407 PHA02875 ankyrin repeat protei 55.8 2.2E+02 0.0047 28.3 18.2 141 5-155 12-158 (413)
408 PF11846 DUF3366: Domain of un 55.1 44 0.00095 28.9 6.5 33 91-123 141-173 (193)
409 COG0735 Fur Fe2+/Zn2+ uptake r 54.7 1E+02 0.0022 25.1 8.1 63 80-143 7-69 (145)
410 PF14669 Asp_Glu_race_2: Putat 54.5 1.4E+02 0.003 25.6 13.8 55 504-558 136-205 (233)
411 PF10366 Vps39_1: Vacuolar sor 53.8 25 0.00055 26.9 4.2 28 535-562 40-67 (108)
412 KOG1464 COP9 signalosome, subu 53.4 1.8E+02 0.0038 26.5 15.0 168 20-187 23-218 (440)
413 PF10366 Vps39_1: Vacuolar sor 52.6 1E+02 0.0022 23.6 7.8 27 400-426 41-67 (108)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 52.4 1E+02 0.0023 24.4 7.6 42 518-559 81-124 (126)
415 COG4976 Predicted methyltransf 51.5 30 0.00064 30.4 4.5 57 477-533 4-62 (287)
416 KOG1550 Extracellular protein 50.9 3.1E+02 0.0068 28.6 22.4 285 209-564 226-539 (552)
417 KOG2168 Cullins [Cell cycle co 50.9 3.6E+02 0.0077 29.3 26.7 89 474-563 628-736 (835)
418 TIGR01503 MthylAspMut_E methyl 50.7 56 0.0012 32.2 6.7 47 174-223 68-114 (480)
419 KOG1114 Tripeptidyl peptidase 50.7 3.8E+02 0.0082 29.5 15.3 120 108-244 1161-1280(1304)
420 PF04097 Nic96: Nup93/Nic96; 49.8 3.4E+02 0.0075 28.8 24.9 61 25-88 114-181 (613)
421 PF11848 DUF3368: Domain of un 49.5 56 0.0012 20.5 4.5 34 104-137 12-45 (48)
422 PRK12798 chemotaxis protein; R 49.5 2.7E+02 0.0058 27.4 17.5 194 367-564 81-287 (421)
423 KOG4642 Chaperone-dependent E3 48.6 2E+02 0.0044 25.8 9.6 116 36-156 23-144 (284)
424 KOG0508 Ankyrin repeat protein 48.6 2.9E+02 0.0063 27.5 10.8 37 319-355 165-203 (615)
425 KOG0403 Neoplastic transformat 48.5 2.8E+02 0.0061 27.4 21.1 57 372-428 514-573 (645)
426 PF11663 Toxin_YhaV: Toxin wit 46.9 22 0.00047 28.2 2.8 21 108-128 109-129 (140)
427 PF12862 Apc5: Anaphase-promot 46.9 1E+02 0.0022 22.8 6.4 22 508-529 49-70 (94)
428 PF14689 SPOB_a: Sensor_kinase 46.3 33 0.00071 23.0 3.3 26 536-561 25-50 (62)
429 KOG4567 GTPase-activating prot 46.3 2.5E+02 0.0055 26.2 9.6 44 79-122 263-306 (370)
430 KOG3824 Huntingtin interacting 46.2 38 0.00082 31.1 4.6 58 480-537 128-187 (472)
431 PRK09857 putative transposase; 46.2 1.7E+02 0.0037 27.4 9.1 66 503-568 209-274 (292)
432 PF04034 DUF367: Domain of unk 46.1 1.5E+02 0.0032 23.4 7.2 58 469-526 67-125 (127)
433 PF07720 TPR_3: Tetratricopept 46.1 59 0.0013 18.9 4.0 15 508-522 9-23 (36)
434 KOG4567 GTPase-activating prot 45.8 2.6E+02 0.0056 26.2 9.8 87 418-510 263-359 (370)
435 PF11838 ERAP1_C: ERAP1-like C 45.7 2.7E+02 0.0058 26.4 17.7 109 449-558 146-261 (324)
436 COG5108 RPO41 Mitochondrial DN 45.6 1.4E+02 0.0031 31.0 8.7 71 134-207 33-115 (1117)
437 PRK10564 maltose regulon perip 45.5 28 0.00061 32.1 3.7 32 163-194 260-291 (303)
438 COG5108 RPO41 Mitochondrial DN 45.1 1.7E+02 0.0036 30.5 9.1 76 28-106 33-115 (1117)
439 PF07575 Nucleopor_Nup85: Nup8 44.8 2.1E+02 0.0045 30.0 10.5 30 244-273 508-537 (566)
440 PF14689 SPOB_a: Sensor_kinase 44.8 48 0.001 22.2 3.9 30 58-87 22-51 (62)
441 PF02184 HAT: HAT (Half-A-TPR) 44.5 54 0.0012 18.5 3.3 27 515-542 2-28 (32)
442 cd00280 TRFH Telomeric Repeat 44.4 1.1E+02 0.0023 26.1 6.5 36 477-512 120-155 (200)
443 COG1747 Uncharacterized N-term 44.4 3.6E+02 0.0077 27.4 21.4 96 56-156 63-158 (711)
444 KOG2581 26S proteasome regulat 43.6 3.2E+02 0.007 26.7 11.0 61 470-531 211-278 (493)
445 COG0735 Fur Fe2+/Zn2+ uptake r 43.6 1.3E+02 0.0028 24.6 7.0 62 420-482 8-69 (145)
446 KOG2908 26S proteasome regulat 42.7 1.9E+02 0.0041 27.4 8.4 73 134-206 80-167 (380)
447 PF04190 DUF410: Protein of un 42.5 2.7E+02 0.0059 25.5 17.8 158 35-223 2-169 (260)
448 PF12968 DUF3856: Domain of Un 42.0 1.4E+02 0.003 23.3 6.2 60 500-559 55-125 (144)
449 PF11817 Foie-gras_1: Foie gra 42.0 1.3E+02 0.0027 27.4 7.6 55 506-560 184-244 (247)
450 PF00244 14-3-3: 14-3-3 protei 41.6 2.7E+02 0.0058 25.1 10.7 162 404-565 7-200 (236)
451 PF09454 Vps23_core: Vps23 cor 40.6 67 0.0014 21.9 4.1 49 396-445 6-54 (65)
452 KOG4521 Nuclear pore complex, 40.4 4E+02 0.0086 30.2 11.4 19 1-19 929-947 (1480)
453 PF06552 TOM20_plant: Plant sp 40.0 1.8E+02 0.0038 24.8 7.2 77 39-125 51-138 (186)
454 COG5187 RPN7 26S proteasome re 40.0 1.5E+02 0.0032 27.3 7.1 95 465-561 112-219 (412)
455 cd08819 CARD_MDA5_2 Caspase ac 39.6 1.5E+02 0.0032 21.6 6.5 36 379-415 48-83 (88)
456 PF11817 Foie-gras_1: Foie gra 39.2 89 0.0019 28.4 6.1 57 64-120 183-244 (247)
457 COG0790 FOG: TPR repeat, SEL1 38.9 3.2E+02 0.007 25.3 18.5 48 515-565 206-268 (292)
458 PF11663 Toxin_YhaV: Toxin wit 38.8 42 0.0009 26.7 3.2 33 409-443 106-138 (140)
459 PRK10564 maltose regulon perip 38.4 60 0.0013 30.1 4.7 36 62-97 260-295 (303)
460 PF11768 DUF3312: Protein of u 38.2 3.8E+02 0.0083 27.4 10.4 127 373-522 414-545 (545)
461 KOG2659 LisH motif-containing 37.6 3E+02 0.0064 24.5 8.5 94 429-524 22-127 (228)
462 PRK11639 zinc uptake transcrip 37.2 2.5E+02 0.0055 23.6 8.3 59 85-144 17-75 (169)
463 PF13934 ELYS: Nuclear pore co 37.2 3.1E+02 0.0066 24.5 12.3 75 380-458 91-165 (226)
464 PF04090 RNA_pol_I_TF: RNA pol 37.0 1.2E+02 0.0025 26.4 6.0 91 500-590 41-132 (199)
465 COG5159 RPN6 26S proteasome re 36.8 3.5E+02 0.0075 25.0 17.4 125 166-290 9-149 (421)
466 PF12926 MOZART2: Mitotic-spin 36.3 1.7E+02 0.0036 21.3 6.8 41 454-494 29-69 (88)
467 PF12926 MOZART2: Mitotic-spin 36.1 1.7E+02 0.0037 21.3 6.8 41 115-155 29-69 (88)
468 PRK14700 recombination factor 35.9 3.7E+02 0.0081 25.2 9.5 62 403-464 128-197 (300)
469 KOG1308 Hsp70-interacting prot 35.6 45 0.00097 31.3 3.5 48 410-458 126-173 (377)
470 KOG2034 Vacuolar sorting prote 35.2 6.4E+02 0.014 27.6 22.1 128 237-382 510-643 (911)
471 PHA02537 M terminase endonucle 35.1 3.3E+02 0.0072 24.4 9.6 105 408-531 93-209 (230)
472 PF03745 DUF309: Domain of unk 34.9 1.4E+02 0.0031 20.0 5.4 47 34-81 10-61 (62)
473 KOG1524 WD40 repeat-containing 34.8 2.5E+02 0.0053 28.4 8.3 55 434-494 574-628 (737)
474 PF10516 SHNi-TPR: SHNi-TPR; 34.4 1E+02 0.0022 18.2 3.8 28 535-562 2-29 (38)
475 smart00777 Mad3_BUB1_I Mad3/BU 34.3 1.9E+02 0.0041 22.9 6.3 43 76-118 80-123 (125)
476 PRK09462 fur ferric uptake reg 33.9 2.6E+02 0.0057 22.8 8.0 60 84-144 7-67 (148)
477 KOG2297 Predicted translation 33.9 4E+02 0.0087 24.9 15.7 71 206-286 266-341 (412)
478 KOG4814 Uncharacterized conser 33.7 1.2E+02 0.0027 31.3 6.3 61 503-563 397-457 (872)
479 TIGR02710 CRISPR-associated pr 33.1 4.7E+02 0.01 25.6 11.3 28 406-433 138-165 (380)
480 KOG2471 TPR repeat-containing 32.9 5.3E+02 0.011 26.0 12.8 219 334-559 19-265 (696)
481 KOG0292 Vesicle coat complex C 32.6 3.7E+02 0.0081 29.3 9.6 163 372-568 625-787 (1202)
482 KOG2422 Uncharacterized conser 32.0 5.9E+02 0.013 26.3 17.9 216 344-562 250-515 (665)
483 PF12796 Ank_2: Ankyrin repeat 31.8 1.9E+02 0.0042 20.6 6.9 81 32-128 3-86 (89)
484 COG5191 Uncharacterized conser 31.7 95 0.0021 28.8 4.8 80 463-542 102-184 (435)
485 PRK11639 zinc uptake transcrip 31.3 2.3E+02 0.005 23.9 6.9 33 177-209 42-74 (169)
486 PF13929 mRNA_stabil: mRNA sta 31.2 4.4E+02 0.0095 24.5 22.4 51 465-515 199-253 (292)
487 PF02847 MA3: MA3 domain; Int 31.1 2.1E+02 0.0046 21.8 6.3 61 27-90 6-68 (113)
488 smart00638 LPD_N Lipoprotein N 31.0 6.5E+02 0.014 26.4 23.0 257 9-276 296-573 (574)
489 PRK13800 putative oxidoreducta 30.9 8.1E+02 0.018 27.6 27.3 57 471-528 824-880 (897)
490 PRK02287 hypothetical protein; 30.5 3.3E+02 0.0072 23.0 7.6 58 470-527 109-167 (171)
491 KOG0686 COP9 signalosome, subu 30.4 5.3E+02 0.012 25.3 13.2 87 368-456 151-252 (466)
492 cd07153 Fur_like Ferric uptake 30.4 1.5E+02 0.0034 22.7 5.5 47 404-450 6-52 (116)
493 KOG0376 Serine-threonine phosp 30.2 60 0.0013 32.1 3.6 90 475-564 11-102 (476)
494 KOG1498 26S proteasome regulat 30.0 5.3E+02 0.012 25.2 14.4 112 472-583 135-261 (439)
495 PF10255 Paf67: RNA polymerase 29.9 3E+02 0.0065 27.2 8.1 28 195-222 164-191 (404)
496 PRK09462 fur ferric uptake reg 29.9 3.1E+02 0.0067 22.4 7.6 60 323-383 8-68 (148)
497 PF10475 DUF2450: Protein of u 29.4 4.8E+02 0.01 24.4 9.7 23 159-181 196-218 (291)
498 PRK06645 DNA polymerase III su 29.1 5.3E+02 0.012 26.5 10.2 23 172-194 269-291 (507)
499 PF01475 FUR: Ferric uptake re 28.6 1.5E+02 0.0032 23.1 5.1 47 403-449 12-58 (120)
500 PF07575 Nucleopor_Nup85: Nup8 28.1 1.7E+02 0.0037 30.6 6.8 163 61-241 374-540 (566)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.1e-86 Score=707.72 Aligned_cols=575 Identities=34% Similarity=0.621 Sum_probs=542.9
Q ss_pred CCCCCCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhH------------------
Q 045105 1 MYGKCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSW------------------ 62 (601)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~------------------ 62 (601)
+|++.|+++.|.++|+++.+||..+||.++.+|++.|++++|+++|++|... +..||..||
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHH
Confidence 3688999999999999999999999999999999999999999999999876 566665555
Q ss_pred -----------------HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcC
Q 045105 63 -----------------SAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGF 125 (601)
Q Consensus 63 -----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 125 (601)
|.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 566666777778888888888875 46778888888888888888889999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHH
Q 045105 126 MSNPFVVNGLVDVYRRCGDMLSALKIFSKFS----IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSM 201 (601)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (601)
.||..+|+.++.++++.|+.+.|.+++..+. .||..+|+++|.+|++.|++++|.++|++|. .||..+|+.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHH
Confidence 9999999999999999999999999998876 5689999999999999999999999999997 6899999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 045105 202 ISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQD 281 (601)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (601)
|.+|++.|++++|+++|++|.. .|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|+++|+
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 9999999999999999999988 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH--------------HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc
Q 045105 282 LVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA--------------MQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347 (601)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 347 (601)
+++|.++|+ .|. .+|..+|++ +.+|++|.. +++||..||+.++.+|++.|+
T Consensus 440 ~~~A~~vf~----------~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 440 IDKALEVFH----------NIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHH----------hCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 999999999 888 678888875 688999986 699999999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHC
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS 427 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 427 (601)
++.+.+++..+.+.|+.++..++++|+++|+++|++++|..+|+.+ .+|..+||++|.+|+++|+.++|+++|++|.+.
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCCccHHhHHHHHHHHhccCchHHHHHHHHHHH-hcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 045105 428 GFRPDHISFLSALSACVHAGSIKTGSEFFDLMA-YYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGAL 506 (601)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 506 (601)
|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+.+||..+|++|
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999999999999999999999998887 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCCceeeeecC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRAS 586 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (601)
+.+|..+|+.+.++.+.+++.+++|+++..|..++++|.+.|+|++|.++.+.|+++|++++||+||+.+.++++.|.++
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~ 743 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD 743 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhhcC
Q 045105 587 DRSHDRSEEIYTIID 601 (601)
Q Consensus 587 ~~~~~~~~~~~~~~~ 601 (601)
|++||++.+||.+|+
T Consensus 744 d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 744 DESHPQIKEINTVLE 758 (857)
T ss_pred CCCCcchHHHHHHHH
Confidence 999999999999874
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-76 Score=619.76 Aligned_cols=510 Identities=29% Similarity=0.504 Sum_probs=493.0
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG 134 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 134 (601)
.++..+|+.+|..|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456699999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
++.+|++.|+++.|.++|++|..||..+|+++|.+|++.|++++|+++|++|...|+.|+..+|+.++.++++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 294 (601)
.+++..+.+ .|+.||..+|+.++.+|++.|++++|.++|+.|. .+|..+|+.+|.+|++.|+.++|.++|+
T Consensus 244 ~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~---- 314 (697)
T PLN03081 244 QQLHCCVLK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY---- 314 (697)
T ss_pred HHHHHHHHH-hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH----
Confidence 999999888 9999999999999999999999999999999985 5689999999999999999999988888
Q ss_pred HHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHH
Q 045105 295 IENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV 374 (601)
Q Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (601)
+|. +.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.|+..++++|+
T Consensus 315 ------~M~---------------------~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 315 ------EMR---------------------DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred ------HHH---------------------HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 454 56788999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHH
Q 045105 375 DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (601)
++|+++|++++|.++|++|.++|..+||.||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 455 FFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 455 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
+|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++++..|+..+|++++.+|..+|+++.|..+++++.++.|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 9988765 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCCceeeeecCCCCCCchhhhhhhcC
Q 045105 534 TGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTIID 601 (601)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (601)
..+|..++++|.+.|+|++|.+++++|+++|+++.||++|+.+.+.++.|+++|++||++.+||.+|+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-71 Score=591.80 Aligned_cols=540 Identities=23% Similarity=0.369 Sum_probs=378.7
Q ss_pred CCCCCCchhHHHHHhhCCC----CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHH
Q 045105 2 YGKCGSLDDAKKVFKMMPE----RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEE 77 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 77 (601)
|.+.|++++|..+|+.+.+ |+..+|..++..|.+.+.++.+..++..+.+. +..++...+|.|+..|++.|+++.
T Consensus 61 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~ 139 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVH 139 (857)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHH
Confidence 4567777888777777764 45555555555555555555555555554443 334444555555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 045105 78 AIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS- 156 (601)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 156 (601)
|.++|++|. +||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++++|+..++++.+.+++..+.
T Consensus 140 A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 140 AWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 555555553 344455555555555555555555555555555555555555555555555555555544444443
Q ss_pred ---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhh
Q 045105 157 ---IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233 (601)
Q Consensus 157 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 233 (601)
.+|..+|+++|.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.. .|+.||..|
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~t 290 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMT 290 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhH
Confidence 2344455555555555555555555555554 34445555555555555555555555555544 445555555
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhh
Q 045105 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYT 313 (601)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 313 (601)
|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+ .|. .||..+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~----------~m~----~~d~~s 356 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS----------RME----TKDAVS 356 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh----------hCC----CCCeee
Confidence 555555555555555555555555555555555555555555555555555555555 444 344444
Q ss_pred hhH--------------HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 045105 314 WNA--------------MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAK 379 (601)
Q Consensus 314 ~~~--------------~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (601)
|++ +.+|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 442 455556667788999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 380 CGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
+|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 58999999999999999999999999999888
Q ss_pred HhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCchH
Q 045105 460 AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL--EPNNTGNY 537 (601)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~ 537 (601)
.+.|+.++..++++|+++|++.|++++|.++|+.+ .||..+|++++.+|+++|+.++|.+++++|.+. .| |..+|
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~ 592 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTF 592 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccH
Confidence 99999999999999999999999999999999888 788899999999999999999999999988875 34 78888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-hcCCccCC
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMK-DRRMHKSP 569 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~-~~~~~~~~ 569 (601)
..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 888888999999999999999998 67776653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-68 Score=559.06 Aligned_cols=512 Identities=16% Similarity=0.230 Sum_probs=476.0
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++...|..++..|++.|++++|+++|++|.+.+..+++..+++.++..|.+.|..++|.++++.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 5677899999999999999999999999999866678899999999999999999999999999973 999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS----IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 176 (601)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCChhhHHHHHHHhcccCCHHHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR-DGIEPTSFTFGSVLIACADMNSLRKGKEIHA 255 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 255 (601)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|... .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999753 6799999999999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHH
Q 045105 256 LAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTV 335 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 335 (601)
.|.+.|+.|+..+|+.+|.+|++.|++++|.++|+ +|. +.|+.||..+|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~----------eM~---------------------~~Gv~PD~~Ty 652 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD----------DMK---------------------KKGVKPDEVFF 652 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH----------HHH---------------------HcCCCCCHHHH
Confidence 99999999999999999999999999999998888 555 56778899999
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHc
Q 045105 336 GIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TPDLVSQNAMLTAYAMH 411 (601)
Q Consensus 336 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~ 411 (601)
+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+||.||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999995 69999999999999999
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh----hcC-----
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS----RAG----- 482 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g----- 482 (601)
|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++..+. +++
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999987643 222
Q ss_pred --------------ChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCchHHHHHHHH
Q 045105 483 --------------ELGEAYEFIKKI---PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL-EPNNTGNYVMLANLF 544 (601)
Q Consensus 483 --------------~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~ 544 (601)
..++|..+|++| ++.||..||+.++..+...++.+.+..+++.+... .+.+..+|..++..+
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 236799999999 78999999999997777888888888888776543 344778999999987
Q ss_pred HHcCCH-HHHHHHHHHHhhcCCccCCC
Q 045105 545 AYAGRW-SDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 545 ~~~g~~-~~A~~~l~~~~~~~~~~~~~ 570 (601)
|++ ++|..++++|.+.|+.|+..
T Consensus 893 ---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 893 ---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 443 68999999999999988864
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-66 Score=545.86 Aligned_cols=490 Identities=14% Similarity=0.198 Sum_probs=457.3
Q ss_pred CCCCCCchhHHHHHhhCCCCCc-----cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChH
Q 045105 2 YGKCGSLDDAKKVFKMMPERDC-----VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDE 76 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~ 76 (601)
|.+.|++++|.++|++|.+++. ..++.++..|.+.|..++|..+|+.|.. ||..+|+.+|.+|++.|+++
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHH
Confidence 4578999999999999997554 3566778889999999999999999753 99999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC
Q 045105 157 ----IKNEVSCNTIIVGYCENGNVAEARELFDQMEH--LGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT 230 (601)
Q Consensus 157 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 230 (601)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+ .|+.|+
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~ 613 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGT 613 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCC
Confidence 57999999999999999999999999999986 68899999999999999999999999999999998 899999
Q ss_pred hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCC
Q 045105 231 SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPN 310 (601)
Q Consensus 231 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~ 310 (601)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++ .|.
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~----------eM~------- 676 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ----------DAR------- 676 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH----------HHH-------
Confidence 999999999999999999999999999999999999999999999999999999988888 554
Q ss_pred hhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHH
Q 045105 311 VYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAY 390 (601)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 390 (601)
+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 677 --------------k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 677 --------------KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred --------------HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC----CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc----c----------------
Q 045105 391 KRIS----TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH----A---------------- 446 (601)
Q Consensus 391 ~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~---------------- 446 (601)
++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 9986 699999999999999999999999999999999999999999999876532 1
Q ss_pred ---CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHH
Q 045105 447 ---GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP---MAPDSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 447 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
+..+.|..+|+.|.+.|+.||..||+.++.++++.+....+..+++.|+ ..|+..+|++++.++.+. .++|.
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 1236799999999999999999999999999999999999999999884 456789999999998443 36899
Q ss_pred HHHHHHHhcC
Q 045105 521 IAADRLIELE 530 (601)
Q Consensus 521 ~~~~~~~~~~ 530 (601)
.++++|.+.+
T Consensus 901 ~l~~em~~~G 910 (1060)
T PLN03218 901 SLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHcC
Confidence 9999999874
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-59 Score=489.95 Aligned_cols=504 Identities=15% Similarity=0.157 Sum_probs=449.4
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++..+|+.++..|.+.|++++|+++|+.|...++..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45568999999999999999999999999986557899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCchhHHHHHHHHHhcCCH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS----IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~ 176 (601)
+..|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999995 4899999999999999999999999999996 57889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
+.+.+++..+.+.|+.||..+|+.||.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998853 6899999999999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 257 AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
|.+.|+.||..+|+.++.+|++.|++++|.+++. .|. +.|+.||..+|+
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~----------~m~---------------------~~g~~~d~~~~~ 364 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA----------GLI---------------------RTGFPLDIVANT 364 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH----------HHH---------------------HhCCCCCeeehH
Confidence 9999999999999999999999999999988887 554 456778888889
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHcC
Q 045105 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TPDLVSQNAMLTAYAMHG 412 (601)
Q Consensus 337 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~ 412 (601)
.++.+|++.|+++.|.++|+.|. .||..+|+++|.+|++.|+.++|.++|++|. .||..||+.++.+|++.|
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999886 4789999999999999999999999999987 699999999999999999
Q ss_pred ChhhHHHHHHHHHH-CCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHH
Q 045105 413 HGKEGIAHFRRILA-SGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI 491 (601)
Q Consensus 413 ~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (601)
..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++. .++.|+..+|++|+.+|...|+.+.|..++
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999986 68999999999999999999999999999864 468899999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHH--------H--HH-HHcCCHHHHHHH
Q 045105 492 KKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN--NTGNYVMLA--------N--LF-AYAGRWSDLART 556 (601)
Q Consensus 492 ~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~--------~--~~-~~~g~~~~A~~~ 556 (601)
+++ +..| +..+|..++..|++.|++++|.++++.|.+.+-. +...|..+. . .. ....-++...++
T Consensus 518 ~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 887 5566 4679999999999999999999999999986421 111111110 0 00 001224556677
Q ss_pred HHHHhhcCCccCCCc
Q 045105 557 RQKMKDRRMHKSPGC 571 (601)
Q Consensus 557 l~~~~~~~~~~~~~~ 571 (601)
..+|.+.|..|++..
T Consensus 598 ~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 598 MKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHcCCCCCcch
Confidence 888888888776553
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-33 Score=306.96 Aligned_cols=537 Identities=14% Similarity=0.058 Sum_probs=413.0
Q ss_pred CCCCCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 2 YGKCGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|.++|+++.+ ..+.+...+..+...+...|++++|
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE--LDPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCCChHHH
Confidence 3467999999999998875 3456788888999999999999999999887 4456777888889999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 045105 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS-- 156 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 156 (601)
.+.++.+.+... ........++..+.+.|+++.|..+++.+... .+.+..++..+..++...|++++|.+.|++..
T Consensus 417 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 417 IADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 999999887642 23345566777888899999999999998775 35667788889999999999999999998875
Q ss_pred -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 045105 157 -IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235 (601)
Q Consensus 157 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 235 (601)
..+...+..+...+...|++++|.+.|+.+...+ +.+..++..+...+.+.|++++|..+++++... .+.+...+.
T Consensus 495 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 571 (899)
T TIGR02917 495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPAL 571 (899)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHH
Confidence 2355667788888999999999999999998765 456778888889999999999999999988752 334556677
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh
Q 045105 236 SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315 (601)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (601)
.+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|...|+ .+.+.. +.+...+.
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~~-~~~~~~~~ 639 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFK----------KLLALQ-PDSALALL 639 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH----------HHHHhC-CCChHHHH
Confidence 78888899999999999999887654 5567788899999999999999999888 443221 11111111
Q ss_pred --------------HHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 045105 316 --------------AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG 381 (601)
Q Consensus 316 --------------~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 381 (601)
++..++.+... .+.+..++..+...+...|+++.|..+++.+.+.+ +.+...+..+...+.+.|
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 23444444432 23346677777888888888888888888877765 345666777777888888
Q ss_pred ChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 382 SLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 382 ~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
++++|...|+.+. .|+..++..+..++.+.|++++|...++++.+.. +.+...+..+...|...|++++|...|+.+
T Consensus 718 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 8888888888765 3555667777788888888888888888887753 455667777778888888888888888666
Q ss_pred HhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 460 AYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 460 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
.+.. +.+..+++.+...+.+.|+ .+|+++++++ ...| +..++..+...+...|++++|.+.++++++.+|.++.++
T Consensus 797 ~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 797 VKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 6554 4556677788888888888 7788888776 3334 455667777778888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
..++.++.+.|++++|.+++++|.+
T Consensus 875 ~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 875 YHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 8888888888888888888887753
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-31 Score=296.19 Aligned_cols=540 Identities=14% Similarity=0.078 Sum_probs=452.9
Q ss_pred CCCCCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 2 YGKCGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|...++.+.+ ..+.+...+..+...+.+.|++++|
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG--LDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3467999999999999874 3455677888899999999999999999987 4566788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 045105 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI- 157 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 157 (601)
.++|+++.+.. +.+...+..+...+...|+++.|.+.++.+.+... ........++..+.+.|++++|..+++.+..
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999998763 33556777888888999999999999999988653 3345566788899999999999999998863
Q ss_pred --CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH
Q 045105 158 --KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG 235 (601)
Q Consensus 158 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 235 (601)
++..++..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.|+++... .+.+..++.
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 537 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAIL 537 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHH
Confidence 367789999999999999999999999998764 445667788889999999999999999999862 344667788
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh
Q 045105 236 SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315 (601)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (601)
.+...+...|+.++|...++.+...+ +.+...+..++..|...|++++|...++ .+.+.. +.+...|.
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILN----------EAADAA-PDSPEAWL 605 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHH----------HHHHcC-CCCHHHHH
Confidence 88889999999999999999998765 4566778889999999999999999998 444321 22233332
Q ss_pred --------------HHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC
Q 045105 316 --------------AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG 381 (601)
Q Consensus 316 --------------~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 381 (601)
++..++.+.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 256666665543 3456678888899999999999999999988754 345778888999999999
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHH
Q 045105 382 SLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDL 458 (601)
Q Consensus 382 ~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (601)
++++|..+++.+. ..+...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|.+.++.
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999887 356667888889999999999999999999986 45557788889999999999999999977
Q ss_pred HHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 459 MAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 459 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
+.+.. +.+...+..+...|.+.|++++|.+.|+++ ... ++..++..+...+...|+ ++|...++++.+..|+++..
T Consensus 762 ~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 762 WLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 66543 556778899999999999999999999988 233 477889999999999999 88999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 537 YVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
+..++.++...|++++|.+.++++.+.++.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999988753
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.7e-24 Score=238.58 Aligned_cols=539 Identities=12% Similarity=0.069 Sum_probs=323.8
Q ss_pred CCCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhH----------------HH
Q 045105 4 KCGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSW----------------SA 64 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~----------------~~ 64 (601)
..++.|.|.+.++++.. .++..+..++..+.+.|+.++|...++++.+. .|.+...+ ..
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHH
Confidence 46888999999988874 45677888888889999999999999999884 33333332 23
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Q 045105 65 VIGGFTQNGYDEEAIGMLFRMQAEGLEPNART-LSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCG 143 (601)
Q Consensus 65 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 143 (601)
+...+.+.|++++|.+.|+.+.+.+ +|+... ...+.......++.++|.+.++.+.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3446788899999999999988653 333321 1111122234588899999999998874 446667788888888899
Q ss_pred CHHHHHHHHhhcCCCCc-----------------------hhH----------------------------------HHH
Q 045105 144 DMLSALKIFSKFSIKNE-----------------------VSC----------------------------------NTI 166 (601)
Q Consensus 144 ~~~~a~~~~~~~~~~~~-----------------------~~~----------------------------------~~l 166 (601)
+.++|+..|+++..... ..+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999998887631100 000 011
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH-----------
Q 045105 167 IVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG----------- 235 (601)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 235 (601)
...+...|++++|+..|++..... +.+...+..+..++.+.|++++|+..|++..+...-.+....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667899999999999998764 34677888899999999999999999999876222222211111
Q ss_pred -HHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCC-hhh
Q 045105 236 -SVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPN-VYT 313 (601)
Q Consensus 236 -~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 313 (601)
.....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|.+.|+.. .+. .|+ ...
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a----------L~~--~p~~~~a 421 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA----------LRM--DPGNTNA 421 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----------HHh--CCCCHHH
Confidence 12345678899999999999999875 345667778899999999999999999843 221 111 111
Q ss_pred hh-------------HHHHHHHHHhCCC--------CCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhH
Q 045105 314 WN-------------AMQLFSEMLSLDL--------TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTA 372 (601)
Q Consensus 314 ~~-------------~~~~~~~~~~~~~--------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (601)
+. ++..+..+..... .-....+..+...+...|++++|...++...+... -++..+..
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~ 500 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYR 500 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 11 1111111100000 00011233344556667777777777777766542 24555566
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC--------------------
Q 045105 373 LVDMYAKCGSLKHARLAYKRIS--TP-DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-------------------- 429 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-------------------- 429 (601)
+...|.+.|++++|...++++. .| +...+..+...+...++.++|+..++.+.....
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 6777777777777777777654 12 333333333334445555555555554432211
Q ss_pred -------------------CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHH
Q 045105 430 -------------------RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEF 490 (601)
Q Consensus 430 -------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 490 (601)
+++...+..+...+.+.|++++|+..|+...... +.+...+..+...|...|++++|++.
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2222333444445555555555555554433322 22344445555555555555555555
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 491 IKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG------NYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 491 ~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
++++. ..| +...+..+..++...|++++|.+.++++.+..|+++. .+..++.++...|++++|.+.+++...
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55441 222 2333444444455555555555555555554443222 333445555555555555555555543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=5.6e-23 Score=226.65 Aligned_cols=516 Identities=10% Similarity=0.045 Sum_probs=283.9
Q ss_pred CCCCCCchhHHHHHhhCCCCCccchH----HHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHH
Q 045105 2 YGKCGSLDDAKKVFKMMPERDCVSWN----SVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEE 77 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 77 (601)
+.+.|++++|++.|+++.+.++.... .........|+.++|++.|+.+.+ ..|.+...+..+...+...|+.++
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~--~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA--DYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHccCCHHH
Confidence 34679999999999999863332211 111222345999999999999998 456677888999999999999999
Q ss_pred HHHHHHHHHHcCCC----------------CCHh---hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHH
Q 045105 78 AIGMLFRMQAEGLE----------------PNAR---TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV 138 (601)
Q Consensus 78 a~~~~~~m~~~~~~----------------p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 138 (601)
|+..++++.+.... ++.. .+...+..+-.......+...+.........|+.. .......
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~ 278 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLA 278 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHH
Confidence 99999998653210 0000 01111111111111122222332222221112111 1122334
Q ss_pred HHhcCCHHHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe-eeh------------HHHH
Q 045105 139 YRRCGDMLSALKIFSKFSI--K-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI-ISW------------NSMI 202 (601)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~------------~~li 202 (601)
+...|++++|+..|++... | +...+..+...+.+.|++++|+..|++..+....... ..| ....
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 4455556666555555431 2 4445555555555566666666655555543211100 001 0112
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 045105 203 SGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDL 282 (601)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (601)
..+.+.|++++|...|++.... .+.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .++.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 3445555566666666555541 11223334444455555556666666555555443 122333333333332 2334
Q ss_pred HHHHHHhhhHHHHHHH-HhhchhcCCCC------------ChhhhhHHHHHHHHHhCCCCC-CHhHHHHHHHHhcCCCch
Q 045105 283 VAAQMAFDEIENIENL-LGKMKEDGFEP------------NVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATM 348 (601)
Q Consensus 283 ~~a~~~~~~~~~~~~~-~~~~~~~g~~~------------~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 348 (601)
++|...++.+.....- ..... ..+.. .-..-.++..+++..+. .| +...+..+...+.+.|++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~-~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIE-RSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 4444444322111000 00000 00000 00001112233332221 12 233344445555555555
Q ss_pred hhHHHHHHHHHHhCCCCchhHH--------------------------------------------hHHHHHHHhcCChH
Q 045105 349 ERGKQVHAYAIRCGYDSDVHIG--------------------------------------------TALVDMYAKCGSLK 384 (601)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~--------------------------------------------~~l~~~~~~~g~~~ 384 (601)
++|...++.+.+.... ++..+ ..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 5555555555443211 11111 12344556667777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC
Q 045105 385 HARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV 464 (601)
Q Consensus 385 ~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (601)
+|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++......
T Consensus 591 eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 591 EAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 77777663 23445566778888999999999999999999863 3456788899999999999999999997655432
Q ss_pred CcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MAP-------DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+.+...+..+..++...|++++|.++++++- ..| +...+..+...+...|++++|++.++++.....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 2345566778889999999999999999872 222 123556667788999999999999999987554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3.5e-21 Score=202.66 Aligned_cols=535 Identities=12% Similarity=0.035 Sum_probs=321.5
Q ss_pred CCCchhHHHHHhhCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPE--R-DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
.|++++|...|+++.+ | +..++..|...|.+.|+.++|+..+++..+ ..+-|...+..+ ..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~~~~~L-a~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDARLERSL-AAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH-HHh---ccChhHHHH
Confidence 4778888888888774 2 345667777777888888888888887776 333333333333 222 666666666
Q ss_pred HHHHHHcC--------------------------------------CCCCHhhHHHH-HHHHHhcCCcchHHHHHHHHHH
Q 045105 82 LFRMQAEG--------------------------------------LEPNARTLSSV-LPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 82 ~~~m~~~~--------------------------------------~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 122 (601)
++++.+.. ..|+..+.... .+.|...++++.|.+++..+.+
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 66665541 11122222222 4555556666666666666666
Q ss_pred hcCCCchHHHHHHHHHHHh-cCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCeeehH-
Q 045105 123 NGFMSNPFVVNGLVDVYRR-CGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ-RGIISWN- 199 (601)
Q Consensus 123 ~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~- 199 (601)
.+ +.+......|..+|.. .++ +.+..+++.....+...+..+...+.+.|+.++|.+++.++...... |+..+|.
T Consensus 211 ~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 211 QN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 65 2333444455555555 244 66666655433446667778888888888888888888887654222 2222211
Q ss_pred -----------------------------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHH
Q 045105 200 -----------------------------SMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 200 -----------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
.++..+.+.++++.+.++.. +.|.......-..+....+...++
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHH
Confidence 11344455555554444421 223332211111112222334444
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH----------HHHHHhhchhcCCC------------
Q 045105 251 KEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN----------IENLLGKMKEDGFE------------ 308 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~~g~~------------ 308 (601)
.+.+..+.+.. +-+......+.-...+.|+.++|.++|...-. ...-+..+......
T Consensus 362 ~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 362 LRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 44444443331 11222222222223344444444444443211 00000000000000
Q ss_pred ----CChhhhh--------HHHHHHHHHhCCC-CC--CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHH
Q 045105 309 ----PNVYTWN--------AMQLFSEMLSLDL-TP--DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTAL 373 (601)
Q Consensus 309 ----~~~~~~~--------~~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (601)
+....|- +...+.... +. ++ +...+..+..++.. ++.++|...+....... |+......+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 0000000 011111111 12 23 45566666666665 78888988777776554 444443344
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchH
Q 045105 374 VDMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIK 450 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~ 450 (601)
...+...|++++|...|+++. .|+...+..+...+.+.|++++|...+++.++.. |+. ..+..+...+...|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 555568999999999998766 3455556677778889999999999999998864 443 33434444555679999
Q ss_pred HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 451 TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
+|...++...+. .|+...+..+..++.+.|+.++|+..+++. ...| +...+..+...+...|+.++|++.++++.+
T Consensus 594 eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 594 LALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999766554 456778888999999999999999999887 4566 556777777788999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 529 LEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 529 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|+++..+..++.++...|++++|...+++..+..
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999887665
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=6.1e-20 Score=193.39 Aligned_cols=508 Identities=12% Similarity=0.020 Sum_probs=324.8
Q ss_pred chHHHHHHH--HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 25 SWNSVVTAC--AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 25 ~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
++-.+..+. ...|++++|+..|+...+ ..|-+..++..|...|...|++++|+..+++..+. .|+...|..++.
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~--~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQ--QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHH
Confidence 444444443 335999999999999998 56667889999999999999999999999999986 666666665553
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHH--------HHhcCCHHHHHHHHhhcCCCC--chhHHH-HHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV--------YRRCGDMLSALKIFSKFSIKN--EVSCNT-IIVGYC 171 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~~-li~~~~ 171 (601)
.+ ++.++|..+++++.+.. +-+..++..+... |.+.+...++++ .+...++ ..+... +...|.
T Consensus 120 ~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 120 AI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred Hh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHH
Confidence 33 88999999999999874 3344555555554 667766666666 3333333 333333 378888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh-CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHH
Q 045105 172 ENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD-NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
+.|++++|++++.++.+.+. .+..-...|..+|.. .++ +.+..+++. ...-+......+...+...|+.+.|
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~-----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ-----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch-----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888877652 233333344444444 233 444444321 1223444444555555555555555
Q ss_pred HHHHHHHHHc------------------------------------------------------------CCCCchhHHH
Q 045105 251 KEIHALAIAL------------------------------------------------------------GLQSDTFVGG 270 (601)
Q Consensus 251 ~~~~~~~~~~------------------------------------------------------------~~~~~~~~~~ 270 (601)
.+++.++... .+.|....
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 344 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM-- 344 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH--
Confidence 5544443321 11121111
Q ss_pred HHHHHHH--hcCCHHHHHHHhhhHHHHHHHHhhchhcCC----CCChhhhhH---------HHHHHHHHh--CCCCCCHh
Q 045105 271 ALVEMYC--RYQDLVAAQMAFDEIENIENLLGKMKEDGF----EPNVYTWNA---------MQLFSEMLS--LDLTPDIY 333 (601)
Q Consensus 271 ~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~---------~~~~~~~~~--~~~~p~~~ 333 (601)
..+.... ..+...++...+. .|.+... .-+..+|.+ -.+++.... ....++..
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~----------~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLAR----------LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HHHHHhhccccCchhHHHHHHH----------HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 1111111 2355555555555 2221100 001112221 122322222 11222333
Q ss_pred HHHHHHHHhcCCCc---hhhH----------------------HHHHHHHHHh-CC-CC--chhHHhHHHHHHHhcCChH
Q 045105 334 TVGIILSACSSLAT---MERG----------------------KQVHAYAIRC-GY-DS--DVHIGTALVDMYAKCGSLK 384 (601)
Q Consensus 334 ~~~~li~~~~~~~~---~~~a----------------------~~~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~ 384 (601)
....++..+.+.+. ..++ .......... +. ++ +...+..+..++.. ++++
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 34455555555544 2222 2222222221 12 33 56677777777776 8899
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc
Q 045105 385 HARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 385 ~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (601)
+|...+.+.. .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.
T Consensus 494 eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 494 VALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999777665 355433333344456899999999999998664 555556667778889999999999999776665
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
. +.+...+..+...+.+.|++++|+..+++. ...|+...+..+...+.+.|++++|++.++++.+++|+++..+..++
T Consensus 572 ~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 572 G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4 222333333444455669999999999987 56788888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++...|++++|...+++..+..+
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999887654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-19 Score=170.16 Aligned_cols=446 Identities=13% Similarity=0.110 Sum_probs=284.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA 105 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (601)
-..|..-..+.|++.+|.+.-...-+ ..+.+....-.+-..+.+..+.+....--....+. .+.-..+|+.+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~--~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQ--EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhc--cCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 33455555666777777766655544 22333333333334444444555443332222222 2334456666666666
Q ss_pred hcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--hh-HHHHHHHHHhcCCHHHHHHH
Q 045105 106 RLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE--VS-CNTIIVGYCENGNVAEAREL 182 (601)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~li~~~~~~g~~~~a~~~ 182 (601)
..|+++.|...++.+++.. +.....|..+..++...|+.+.|.+.|.+...-|+ .. .+.+...+-..|++++|...
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 6677777777776666643 23445666666666666776666666665553322 22 12233334446667777666
Q ss_pred HHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 045105 183 FDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIALG 261 (601)
Q Consensus 183 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (601)
|.+..... +--...|+.|...+-..|+...|+..|++... +.|+ ...|-.+-..+...+.++.|...|......
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 66665543 22345666677777777777777777766654 4444 234666666666777777777666665543
Q ss_pred CCCc-hhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 045105 262 LQSD-TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS 340 (601)
Q Consensus 262 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 340 (601)
.|+ ..++..+...|-..|.++-|++.++ +.. .+.|+
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Yk----------ral-----------------------~~~P~--------- 318 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYK----------RAL-----------------------ELQPN--------- 318 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHH----------HHH-----------------------hcCCC---------
Confidence 232 3344445555556666666666555 222 01111
Q ss_pred HhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhH
Q 045105 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a 417 (601)
-+..|+.|..++-..|++.+|.+.+++.. .....+.+.|...|...|.+++|
T Consensus 319 -------------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 319 -------------------------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred -------------------------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 23445566666666666666666666554 23445777888888888888888
Q ss_pred HHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 418 IAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
..+|....+ +.|.- ...+.|...|-+.|++++|+..|++... +.|+ ...|+.+...|...|+...|+..+.++
T Consensus 374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 888888877 56664 4788888888899999999998876544 5666 457888888999999999999988776
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 495 PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 495 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
.+.|. ...++.|...|..+|++.+|++.|+.+..++|+.+.++..++.++.--.+|.+
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 55674 45678899999999999999999999999999999999999988765444443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=3.9e-19 Score=166.56 Aligned_cols=426 Identities=13% Similarity=0.111 Sum_probs=321.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcC
Q 045105 98 SSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENG 174 (601)
Q Consensus 98 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 174 (601)
..|..-..+.|++.+|++.....-... +.+....-.+-..+....+.++....-.... ..-..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344455566677777777665554432 2222233333344555555554443322222 224567888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH-HhcccCCHHHHHHH
Q 045105 175 NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI-ACADMNSLRKGKEI 253 (601)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~ 253 (601)
++++|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++ +.|+......-+. .+...|++++|...
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988764 34677888899999999999999999988776 6676554433222 23346888888888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCC-H
Q 045105 254 HALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPD-I 332 (601)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~ 332 (601)
|.+..+... .=...|+.|...+-..|+...|++.|+ +.. .+.|+ .
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~----------eAv-----------------------kldP~f~ 252 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYE----------EAV-----------------------KLDPNFL 252 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHH----------Hhh-----------------------cCCCcch
Confidence 877765431 224567778888888999999988888 333 23343 3
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCC-hhhHHHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPD-LVSQNAMLTAYA 409 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~ll~~~~ 409 (601)
..|-.+-..+...+.+++|..-+....... +.....+..+...|...|.++-|++.+++.. +|+ ...|+.|..++-
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 356677777778888888888777665433 2245566677788999999999999999887 344 368999999999
Q ss_pred HcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 487 (601)
..|+..+|...|.+.+.. .|+. .+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|
T Consensus 332 d~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred hccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHH
Confidence 999999999999999984 5654 5888899999999999999999976444 4555 44788899999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 488 YEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 488 ~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+.-+++. .+.|+ ...++.+...|-..|+.+.|.+.+.++++.+|.-..++..|+.+|-.+|+..+|.+-++...+..+
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999887 67886 457888889999999999999999999999999999999999999999999999999999887765
Q ss_pred cc
Q 045105 566 HK 567 (601)
Q Consensus 566 ~~ 567 (601)
..
T Consensus 488 Df 489 (966)
T KOG4626|consen 488 DF 489 (966)
T ss_pred CC
Confidence 43
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1e-17 Score=173.74 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=125.1
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
.|..+...+...|++++|...|+.+. +.+...|..+...+...|++++|+..|++.++.. +.+...+..+..++.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 44445555556666666666665543 2344566666777777777777777777777642 2234556666677777
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HH-------HHHHHHHHHhcCCh
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS-VM-------WGALLGGCVSHGNL 516 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~-------~~~l~~~~~~~g~~ 516 (601)
.|++++|+..++..... .+.+...++.+..++...|++++|++.|++. ...|+. .. ++.....+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 77777777777554442 2334566777777777778888887777765 333321 11 11111223345788
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 517 EFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 517 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
++|.+.++++.+++|++..++..++.++.+.|++++|.+.+++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888877777888888888888888888888777544
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.8e-19 Score=176.28 Aligned_cols=304 Identities=14% Similarity=0.094 Sum_probs=207.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC-ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHH
Q 045105 201 MISGYVDNSLYDEAFSMFRDLLMRDGIEP-TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSD---TFVGGALVEMY 276 (601)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 276 (601)
....+...|++++|+..|+++.. ..| +..++..+...+...|+++.|..+++.+...+..++ ...+..+...|
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLK---VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34455666777777777777765 223 334555566666666666666666666655432211 13445555556
Q ss_pred HhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHH
Q 045105 277 CRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356 (601)
Q Consensus 277 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 356 (601)
.+.|++++|..+|+ .+.
T Consensus 118 ~~~g~~~~A~~~~~----------~~l----------------------------------------------------- 134 (389)
T PRK11788 118 LKAGLLDRAEELFL----------QLV----------------------------------------------------- 134 (389)
T ss_pred HHCCCHHHHHHHHH----------HHH-----------------------------------------------------
Confidence 66666666655555 333
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC------hhhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 045105 357 YAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PD------LVSQNAMLTAYAMHGHGKEGIAHFRRILASG 428 (601)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 428 (601)
+.. +.+...+..++..+.+.|++++|...++.+.+ |+ ...+..+...+...|++++|...|+++.+..
T Consensus 135 ---~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 135 ---DEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred ---cCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 221 12333444455555555555555555554431 11 1134556777888899999999999988753
Q ss_pred CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 045105 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALL 507 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 507 (601)
+.+...+..+...+.+.|++++|.++++.+...+......+++.++.+|.+.|++++|...++++ ...|+...+..+.
T Consensus 211 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la 289 (389)
T PRK11788 211 -PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALA 289 (389)
T ss_pred -cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 33345777788889999999999999977666543333456788999999999999999999987 4467777778889
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH---cCCHHHHHHHHHHHhhcCCccCCCcceEEe
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY---AGRWSDLARTRQKMKDRRMHKSPGCSWIED 576 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 576 (601)
..+.+.|++++|...++++.+..|+++ .+..+...+.. .|+.+++..++++|.+++++++|.+....+
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~c 360 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNC 360 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCC
Confidence 999999999999999999999999655 55555555553 569999999999999999999999554333
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=8.6e-19 Score=172.82 Aligned_cols=297 Identities=11% Similarity=0.042 Sum_probs=233.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHh
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN---ARTLSSVLPACAR 106 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 106 (601)
...+...|++++|+..|+++.+ ..+.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999988 4556777899999999999999999999999887532222 2457778888899
Q ss_pred cCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--------chhHHHHHHHHHhcCCHHH
Q 045105 107 LQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN--------EVSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 107 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~ 178 (601)
.|+++.|..+|+.+.+.. +.+..++..++.++.+.|++++|.+.++.+...+ ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998753 4567788899999999999999999998876321 1134567777888999999
Q ss_pred HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT--SFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.. . .|+ ..++..+..++...|++++|...++.
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-Q--DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988764 33455777788899999999999999999876 2 333 35677888889999999999999998
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 257 AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
+.+.. |+...+..++..+.+.|++++|..+++ ++. ...|+..++.
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~----------~~l-----------------------~~~P~~~~~~ 319 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLR----------EQL-----------------------RRHPSLRGFH 319 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHH----------HHH-----------------------HhCcCHHHHH
Confidence 88764 555666888899999999999998888 444 2357777777
Q ss_pred HHHHHhcC---CCchhhHHHHHHHHHHhCCCCchh
Q 045105 337 IILSACSS---LATMERGKQVHAYAIRCGYDSDVH 368 (601)
Q Consensus 337 ~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 368 (601)
.++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77776654 458888999999999887777766
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.2e-17 Score=161.16 Aligned_cols=551 Identities=13% Similarity=0.081 Sum_probs=356.9
Q ss_pred CCCCchhHHHHHhhCCC--CCcc--chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChH---
Q 045105 4 KCGSLDDAKKVFKMMPE--RDCV--SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDE--- 76 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~--- 76 (601)
..|++-.|..+|..+.. |... ..--+..++.+.|+.+.|+..|+...+ ..|-++.++-.|...-....+.+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHHHHHHHHHccchHHHH
Confidence 35788889999988653 2211 222334566788888888888888887 34445555555544444444443
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCCHHHHHHHHhh
Q 045105 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMS--NPFVVNGLVDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (601)
.+..++...-... .-++...+.|.+.+.-.|++..+..+...+......- -...|-.+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4455554443321 3355567777788888888888888888877654211 223466778888888888888888876
Q ss_pred cCCC--C--chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC----ChhHHHHHHHHHHHcCC
Q 045105 155 FSIK--N--EVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS----LYDEAFSMFRDLLMRDG 226 (601)
Q Consensus 155 ~~~~--~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~ 226 (601)
.... + +..+.-+...+.+.|+++.+...|+...... +.+..+...|...|...+ ..+.|..++.+....
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-- 409 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-- 409 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--
Confidence 6532 2 3345567788888888888888888887653 345556666666666654 456666666666541
Q ss_pred CCCChhhHHHHHHHhcccCCHHHHHHHHHH----HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 227 IEPTSFTFGSVLIACADMNSLRKGKEIHAL----AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 227 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
.+.|...|..+...+. .++...+..++.. +...+..+.+...|.+...+...|++..|...|...... ....+
T Consensus 410 ~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~--~~~~~ 486 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK--LLEVA 486 (1018)
T ss_pred ccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh--hhhhc
Confidence 2334445544444443 3344333554443 345566677788888888888888888888887754332 11111
Q ss_pred h-hcCCCCCh-hhhhHHHHHHHHHhC-----------CCCCCH-hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchh
Q 045105 303 K-EDGFEPNV-YTWNAMQLFSEMLSL-----------DLTPDI-YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVH 368 (601)
Q Consensus 303 ~-~~g~~~~~-~~~~~~~~~~~~~~~-----------~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 368 (601)
- +.|-.++. ..||.-.+.+.+... ...|.- ..|..+.......+...+|...++...... ..++.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 1 11111221 234432333322111 012221 122222222223356677777777766543 23455
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHH------------cCChhhHHHHHHHHHHCCCCc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS-----TPDLVSQNAMLTAYAM------------HGHGKEGIAHFRRILASGFRP 431 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~m~~~~~~p 431 (601)
.+..+...+.+...+..|..-|+.+. .+|..+.-.|.+.|.+ .+..++|+++|.+.+... +-
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 55556667888777877777554443 2455555555554432 245678999999988863 44
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI----PMAPDSVMWGALL 507 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~ 507 (601)
|.+.-+.+.-.++..|++..|..+|..+.+... -...+|-.+..+|...|++..|+++|+.. .-..+..+...|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 667777788888999999999999988777653 34567888999999999999999999865 2356788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH-------------------cCCHHHHHHHHHHHhhcCCc
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY-------------------AGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~l~~~~~~~~~ 566 (601)
.++...|++.+|.+.+..+..+.|.++...+.++-+..+ .+..+.|.++|.+|.+-+.+
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999888887766653 34677888888888776654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=6.6e-17 Score=170.79 Aligned_cols=404 Identities=11% Similarity=0.069 Sum_probs=255.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHH
Q 045105 127 SNPFVVNGLVDVYRRCGDMLSALKIFSKFSI-K--NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS 203 (601)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (601)
.+.....-.+.+....|+.++|++++.+... . +...+..+...+.+.|++++|.++|++..... +.+...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3344444455555556666666666655542 1 22235555666666666666666666655442 223444555556
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 045105 204 GYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (601)
.+...|++++|+..+++.... .|+...+..+..++...|+.+.|...++.+.+.. +.+...+..+..++...|..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG---APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 666666666666666666542 2222225455555666666666666666666653 223444445666666677777
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHh-----cCCCch---hhHHHHH
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSAC-----SSLATM---ERGKQVH 355 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~~~~---~~a~~~~ 355 (601)
.|+..++ .... .|+.. ..+ ..+ ....++... ...+++ ++|...+
T Consensus 168 ~Al~~l~----------~~~~---~p~~~--~~l-----------~~~--~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 168 PALGAID----------DANL---TPAEK--RDL-----------EAD--AAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHH----------hCCC---CHHHH--HHH-----------HHH--HHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 7776666 3321 11100 000 000 001111111 122233 6677788
Q ss_pred HHHHHh-CCCCchh-HH-hH---HHHHHHhcCChHHHHHHHhcCCCCC---hh-hHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 356 AYAIRC-GYDSDVH-IG-TA---LVDMYAKCGSLKHARLAYKRISTPD---LV-SQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 356 ~~~~~~-~~~~~~~-~~-~~---l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
+.+.+. ...|+.. .+ .. .+..+...|++++|+..|+.+.+.+ +. ....+...|...|++++|+..|+++.
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 877754 2223221 11 11 1234456799999999999988422 11 12225678999999999999999987
Q ss_pred HCCCCcc-----HHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-----------CcC---chHHHHHHHHhhhcCChHH
Q 045105 426 ASGFRPD-----HISFLSALSACVHAGSIKTGSEFFDLMAYYDV-----------KPS---LKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 426 ~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~ 486 (601)
... |. ......+..++...|++++|..+++.+..... .|+ ...+..+...+...|+.++
T Consensus 300 ~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 643 32 23456667788999999999999977665421 122 1234567778889999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
|++.++++ ...| +...+..+...+...|++++|++.++++.+.+|+++..+..++.++.+.|++++|..+++++.+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999987 3345 677888899999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 045105 565 M 565 (601)
Q Consensus 565 ~ 565 (601)
+
T Consensus 458 P 458 (765)
T PRK10049 458 P 458 (765)
T ss_pred C
Confidence 3
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=4.3e-17 Score=168.37 Aligned_cols=331 Identities=9% Similarity=0.019 Sum_probs=228.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHH
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIA 240 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~ 240 (601)
....++..+.+.|++++|..+++....... -+...+..++.+....|++++|...++++.. ..|+ ...+..+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~---~~P~~~~a~~~la~~ 119 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLA---VNVCQPEDVLLVASV 119 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHH
Confidence 345566667777777777777777766542 2333444455666667777777777777765 3333 3345555566
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHH
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLF 320 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (601)
+...|+.+.|...++.+.... +.+...+..+..++...|++++|...+. .+...
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~----------~~~~~--------------- 173 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR----------TQAQE--------------- 173 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH----------HHHHh---------------
Confidence 677777777777777777653 3345566777777888888888877776 33211
Q ss_pred HHHHhCCCCCC-HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CC
Q 045105 321 SEMLSLDLTPD-IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TP 396 (601)
Q Consensus 321 ~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~ 396 (601)
.|+ ...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++.+. ..
T Consensus 174 --------~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 174 --------VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred --------CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 111 1112122 2356678888888888777665433444444555677888899999888888766 34
Q ss_pred ChhhHHHHHHHHHHcCChhh----HHHHHHHHHHCCCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHH
Q 045105 397 DLVSQNAMLTAYAMHGHGKE----GIAHFRRILASGFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHY 471 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 471 (601)
+...+..+...|...|++++ |...|++..+. .|+ ...+..+...+...|++++|...++...... +.+...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 55677778888889998885 78899998885 454 4578888889999999999999997666543 2335567
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMW-GALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
..+..+|.+.|++++|+..++++ ...|+...+ ..+..++...|+.++|...++++.+..|++.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 77888899999999999999887 345655443 3345678889999999999999999988754
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=9e-16 Score=158.84 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=92.9
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-hhHHHH--HHHHHhcCCHHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE-VSCNTI--IVGYCENGNVAEARE 181 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~g~~~~a~~ 181 (601)
.+.|+++.|...|++..+....-...++ .++..+...|+.++|+..+++...|+. ..+..+ ...+...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555555555544211111222 555555555666666666665554422 222222 334555566666666
Q ss_pred HHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 045105 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALG 261 (601)
Q Consensus 182 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (601)
+|+++.+.. +-+...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|.+.++++.+..
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 666665553 22344445555666666666666666666543 34444444333333333444444666666666553
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 262 LQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
+.+...+..++.++.+.|-...|.++..
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 3345555666666666666666655544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.6e-16 Score=165.00 Aligned_cols=430 Identities=13% Similarity=-0.006 Sum_probs=255.9
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4556777888999999999999998863 4677889999999999999999999999988753 33456788888899
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
...|++++|...+......+...+.. ...++..+........+...++.-. ++...+..+.. +......+....-+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 99999999998887666543222222 2222222212112233444443322 22233333322 222222222222222
Q ss_pred HHHhcCCCCC-eeehHHHHHHH---HhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 185 QMEHLGVQRG-IISWNSMISGY---VDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 185 ~m~~~g~~~~-~~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
.-... .+. ...+..+...+ ...+++++|++.|+.........|+ ...+..+...+...|++++|...++....
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 111 11122121111 2346788999999888763323343 34566666677788999999999988877
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHH
Q 045105 260 LGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIIL 339 (601)
Q Consensus 260 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 339 (601)
.. +.....|..+..++...|++++|...|+ ...+. .|
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~----------~al~~-----------------------~p--------- 396 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFD----------KALKL-----------------------NS--------- 396 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH----------HHHHh-----------------------CC---------
Confidence 63 2234566777777888888888887777 33210 11
Q ss_pred HHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhh
Q 045105 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKE 416 (601)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~ 416 (601)
.++.++..+...+...|++++|...|++.. +.+...+..+...+.+.|++++
T Consensus 397 -------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 397 -------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 123334444445555555555555555543 2233445556666667777777
Q ss_pred HHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch------HHHHHHHHhhhcCChHHHHHH
Q 045105 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK------HYTCMVDLLSRAGELGEAYEF 490 (601)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~ 490 (601)
|+..|++.++.. +.+...+..+...+...|++++|...|+.........+.. .++.....+...|++++|.++
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777766541 2234566666677777777777777775544432111111 111112223345788888888
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 491 IKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 491 ~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+++. ...| +...+..+...+...|++++|.+.++++.++.+.
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 8775 4445 3446777777888888888888888888887664
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=7e-16 Score=138.69 Aligned_cols=429 Identities=15% Similarity=0.141 Sum_probs=301.6
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CcchH-HHHHHHHHHhcCCCchHHHHHH
Q 045105 59 LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ--KLSLG-KEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 59 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~g~~~~~~~~~~l 135 (601)
+.+=|.|+.. ..+|....+.-+|+.|++.|+..+...-..|++..+-.+ ++.-+ .+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4556666654 567889999999999999999988888777777654333 33322 22344444444 2222333
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 136 VDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
+.|+..+ ++-+...++..+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-... .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3454443 666677788899999999999999999999999999988778999999999976543322 6
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHhh
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK----GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVA-AQMAFD 290 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~ 290 (601)
+++.+|.. ..+.||..|||.++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.
T Consensus 259 ~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 259 KLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 78889988 8899999999999999999998765 46788899999999999999999999999888755 333333
Q ss_pred hHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHh----CCCCc
Q 045105 291 EIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC----GYDSD 366 (601)
Q Consensus 291 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 366 (601)
++.+.+...-+.| ..+.|...|...+..|.+..+.+.|.++...+... -+.|+
T Consensus 338 ------dI~N~ltGK~fkp-----------------~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~ 394 (625)
T KOG4422|consen 338 ------DIQNSLTGKTFKP-----------------ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD 394 (625)
T ss_pred ------HHHHhhccCcccC-----------------CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH
Confidence 2222333222222 12235667888999999999999999998776533 12333
Q ss_pred ---hhHHhHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHH
Q 045105 367 ---VHIGTALVDMYAKCGSLKHARLAYKRIST----PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSA 439 (601)
Q Consensus 367 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 439 (601)
..-|..+..+.+.....+.-...|+.+.. |+..+...++++....|+++-.-++|.+++..|-.-+...-.-+
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei 474 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI 474 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 23455677788888889999999998873 77888888899998999999999999998887744444333333
Q ss_pred HHHHhccC--------------------chHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC----
Q 045105 440 LSACVHAG--------------------SIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI---- 494 (601)
Q Consensus 440 ~~~~~~~g--------------------~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 494 (601)
+..+++.+ ++.++.+.- ..+.+.. ......+.+.-.+.+.|+.++|.++|.-.
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 33333322 111111111 2223333 33445677777788889999888887554
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045105 495 ---PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530 (601)
Q Consensus 495 ---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 530 (601)
+..|......-++..-...++.-.|..+++-+.+.+
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 223433444456666677788888888888886653
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.1e-15 Score=158.29 Aligned_cols=450 Identities=12% Similarity=0.065 Sum_probs=289.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNL-VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
+-...+.|+++.|++.|++..+. .+-+. ..+ -++..+...|+.++|+..+++.... ..........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 33456778888888888888763 22222 233 7777778888888888888888611 1122223333345677778
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch--hHHHHHHHHHhcCCHHHHHHHHHHH
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV--SCNTIIVGYCENGNVAEARELFDQM 186 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m 186 (601)
++++|.++++.+.+.. +.+...+..++..+...++.++|++.++++...+.. .+..++..+...++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888888888775 334566667778888888888888888888754333 3333333333355555588888888
Q ss_pred HhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCch
Q 045105 187 EHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDT 266 (601)
Q Consensus 187 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (601)
.... +.+...+..++.++.+.|-...|+++..+-.. -. +......+ . .+.+.+ .++.+..++.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f--~~~~~~~l-~-------~~~~a~----~vr~a~~~~~ 258 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LV--SAEHYRQL-E-------RDAAAE----QVRMAVLPTR 258 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--cc--CHHHHHHH-H-------HHHHHH----HHhhcccccc
Confidence 7764 34566667777888888888888777654211 01 11111111 0 001111 1111111100
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCC-HhHHHHHHHHhcCC
Q 045105 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPD-IYTVGIILSACSSL 345 (601)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 345 (601)
. ...++..+.+.+..++. ++..+. -.|.. .|. .....-.+-++...
T Consensus 259 ~----------~~~r~~~~d~ala~~~~---l~~~~~---~~p~~-----------------~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 259 S----------ETERFDIADKALADYQN---LLTRWG---KDPEA-----------------QADYQRARIDRLGALLVR 305 (822)
T ss_pred c----------chhhHHHHHHHHHHHHH---HHhhcc---CCCcc-----------------chHHHHHHHHHHHHHHHh
Confidence 0 01122222222221111 111111 00100 001 11223445677888
Q ss_pred CchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCC---------ChhhHHHHHHHHHHcCChhh
Q 045105 346 ATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP---------DLVSQNAMLTAYAMHGHGKE 416 (601)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~ 416 (601)
++..++...++.+...+.+....+-..+.++|...+++++|..+++.+..+ +......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 999999999999999887766678889999999999999999999987531 22234678889999999999
Q ss_pred HHHHHHHHHHCCC-----------Ccc--HH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC
Q 045105 417 GIAHFRRILASGF-----------RPD--HI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG 482 (601)
Q Consensus 417 a~~~~~~m~~~~~-----------~p~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 482 (601)
|..+++++.+.-. .|| -. .+..++..+...|++.+|++.++.+... -+-|......+.+.+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 9999999987311 122 22 3444567778899999999999776443 3667778888889999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 483 ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
.+.+|++.++.. ...| +..+......++...|++++|..+.+.+.+..|+++.
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 999999999776 3456 4566667777788889999999999999999997773
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.1e-16 Score=163.38 Aligned_cols=332 Identities=9% Similarity=-0.003 Sum_probs=262.6
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045105 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEM 275 (601)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 275 (601)
.-...++..+.+.|++++|+.+++...... +-+......+..+....|+++.|...++.+.... +.+...+..+...
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344567788899999999999999988622 2233344455566677999999999999999875 4456778888999
Q ss_pred HHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC-CHhHHHHHHHHhcCCCchhhHHHH
Q 045105 276 YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATMERGKQV 354 (601)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~ 354 (601)
+...|++++|...++ +.. ...| +...+..+...+...|+.++|...
T Consensus 120 l~~~g~~~~Ai~~l~----------~Al-----------------------~l~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 120 LLKSKQYATVADLAE----------QAW-----------------------LAFSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred HHHcCCHHHHHHHHH----------HHH-----------------------HhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998 444 1233 345677788899999999999999
Q ss_pred HHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCC
Q 045105 355 HAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP----DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFR 430 (601)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 430 (601)
+..+......+. ..+..+ ..+.+.|++++|...++.+.+. +...+..+..++...|++++|+..+++..+.. +
T Consensus 167 ~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 167 ARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred HHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 998876654333 333333 3478899999999999887632 23344555678899999999999999999864 3
Q ss_pred ccHHhHHHHHHHHhccCchHH----HHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 045105 431 PDHISFLSALSACVHAGSIKT----GSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWG 504 (601)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 504 (601)
.+...+..+...+...|++++ |...++...... +.+...+..+...+.+.|++++|+..+++. ...| +...+.
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345677888899999999986 788887666543 335668889999999999999999999987 3456 456677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
.+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|...+++..+..+..
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 788889999999999999999999999887777778889999999999999999988776543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.7e-15 Score=136.24 Aligned_cols=423 Identities=15% Similarity=0.143 Sum_probs=255.9
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHh--hcCC-hHHHHHHHHHHHHcC-----------
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFT--QNGY-DEEAIGMLFRMQAEG----------- 89 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~~~-~~~a~~~~~~m~~~~----------- 89 (601)
.+=|.|+..- .+|.+.++.-+++.|++. +.+.+...-..|.+.-+ .+.+ +-.-++.|-.|...|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3445555443 346667777777777775 44444444444433222 1111 111222333332221
Q ss_pred --------CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch
Q 045105 90 --------LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV 161 (601)
Q Consensus 90 --------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (601)
.+-+..||.++|.++++.-..+.|.+++++......+.+..+||.+|.+-.-..+-+-.-+....-..||..
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchH
Confidence 234567888888888888888888888888877777888888888887765544433333333333467888
Q ss_pred hHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhH-HHHHHHHHHHc---CCCCC----
Q 045105 162 SCNTIIVGYCENGNVAE----ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE-AFSMFRDLLMR---DGIEP---- 229 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~---~~~~p---- 229 (601)
|+|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..+|..+++.+++.+ +..++.++..+ ...+|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 88888888888887764 56788999999999999999999999999988755 44455554421 22222
Q ss_pred ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 230 TSFTFGSVLIACADMNSLRKGKEIHALAIALG----LQSD---TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 230 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
|...|...+..|.+..+.+.|.++........ +.|+ ..-|..+..+.|+....+.-...++
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~------------ 422 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE------------ 422 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45567888888999999999999887765432 2222 1233445555555555554444444
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
.|...-+-|...+...++++....+.++-..++|..++..|.........-++..+++..-
T Consensus 423 -------------------~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~ 483 (625)
T KOG4422|consen 423 -------------------DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL 483 (625)
T ss_pred -------------------HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 4444456788888889999999999999999999999988865444443333333333220
Q ss_pred hHHHHHHHhcCCCCChh---hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 383 LKHARLAYKRISTPDLV---SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
.|+.. -+.....-++ ..-.+.....-.+|.+..+.| ...+.+.--+.+.|..++|.+++..+
T Consensus 484 ------------hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 484 ------------HPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred ------------CCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 12111 1111111111 111122222334455544443 34444555567788888888888665
Q ss_pred HhcC-CCcCchHHH---HHHHHhhhcCChHHHHHHHHhC
Q 045105 460 AYYD-VKPSLKHYT---CMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 460 ~~~~-~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
.+.+ --|-....| -+++...+..+...|...++-+
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4333 223333444 4444555667777777777766
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=5.2e-16 Score=163.98 Aligned_cols=420 Identities=12% Similarity=0.004 Sum_probs=278.0
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 135 (601)
+.+...-.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444444555667777888899988888887632 4455568888888888888888888888887763 4445666777
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChh
Q 045105 136 VDVYRRCGDMLSALKIFSKFSI--K-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYD 212 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 212 (601)
..++...|+.++|...+++... | +.. +..+...+...|+.++|+..++++.... +.+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 7788888888888888877652 2 444 6677777777888888888888877664 224444555666777777777
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH---HHHHHHh
Q 045105 213 EAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDL---VAAQMAF 289 (601)
Q Consensus 213 ~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~ 289 (601)
.|+..++.... .|+... -+. ...+..... ..+.......+++ ++|+..+
T Consensus 168 ~Al~~l~~~~~----~p~~~~---~l~-------~~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 168 PALGAIDDANL----TPAEKR---DLE-------ADAAAELVR--------------LSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHhCCC----CHHHHH---HHH-------HHHHHHHHH--------------hhcccccChhHHHHHHHHHHHHH
Confidence 77777765432 233100 000 000000000 0000001111222 3444444
Q ss_pred hhHHHHHHHHhhchhc-CCCCChhhhhHHHHHHHHHhCCCCCCHh-HHHHHHHHhcCCCchhhHHHHHHHHHHhCCC-Cc
Q 045105 290 DEIENIENLLGKMKED-GFEPNVYTWNAMQLFSEMLSLDLTPDIY-TVGIILSACSSLATMERGKQVHAYAIRCGYD-SD 366 (601)
Q Consensus 290 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 366 (601)
+ .+.+. ...|+. .|... .....+.++...++.++|...|+.+.+.+.+ |+
T Consensus 220 ~----------~ll~~~~~~p~~-----------------~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~ 272 (765)
T PRK10049 220 D----------ALEALWHDNPDA-----------------TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP 272 (765)
T ss_pred H----------HHHhhcccCCcc-----------------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH
Confidence 4 22211 001110 11000 1111133445678999999999999887632 32
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC-----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCC-----------
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST--PD-----LVSQNAMLTAYAMHGHGKEGIAHFRRILASG----------- 428 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----------- 428 (601)
- ....+...|...|++++|...|+.+.+ |. ......+..++...|++++|..+++++.+..
T Consensus 273 ~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~ 351 (765)
T PRK10049 273 W-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT 351 (765)
T ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC
Confidence 2 222357789999999999999998763 22 2345566778899999999999999998752
Q ss_pred CCccH---HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 045105 429 FRPDH---ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMW 503 (601)
Q Consensus 429 ~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~ 503 (601)
-.|+. ..+..+...+...|++++|+.+++.+... .+.+...+..+...+...|++++|++.++++ ...|+ ...+
T Consensus 352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 11332 24456677888999999999999776554 3555778889999999999999999999988 45675 5666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
......+...|++++|+..++.+++..|+++.+
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777778889999999999999999999987743
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6.1e-15 Score=146.10 Aligned_cols=539 Identities=13% Similarity=0.090 Sum_probs=344.2
Q ss_pred chhHHHHHhhCCCCCccc-hHHHHHHHH--hcCChHHHHHHHHHhhhc-CCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 8 LDDAKKVFKMMPERDCVS-WNSVVTACA--ANGLVLEALECLERMSSL-DNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~-~~~ll~~~~--~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
++.|...|..+.+.++.- ...|..++. ..+++..|+.+|...... +..+||+. -.+..++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 488888888888654432 333444443 357999999999986543 13344443 233466778999999999999
Q ss_pred HHHHcCCCC-CHhhHHHHHHHHHhcCC---cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 045105 84 RMQAEGLEP-NARTLSSVLPACARLQK---LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN 159 (601)
Q Consensus 84 ~m~~~~~~p-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (601)
+..+. .| ++.++..|...-....+ +..+...+...-... .-++.+.+.|.+.|.-.|++..+..+...+...+
T Consensus 224 ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 224 RALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99875 34 33333333322222233 344455554444433 5677888999999999999999999988776432
Q ss_pred ------chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-h
Q 045105 160 ------EVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-F 232 (601)
Q Consensus 160 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~ 232 (601)
..+|-.+.++|-..|++++|...|-+..+..-...+..+-.+.+.+.+.|+.+.+...|+.+.. ..||. .
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~e 377 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNYE 377 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchHH
Confidence 3458889999999999999999998887664222234455678999999999999999999876 34544 4
Q ss_pred hHHHHHHHhcccC----CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCC
Q 045105 233 TFGSVLIACADMN----SLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFE 308 (601)
Q Consensus 233 ~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~ 308 (601)
|..++-..|...+ ..+.|..++....+.- +.|...|-.+...+-.. +...++..+.. +.. .+...+-.
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~---A~d---~L~~~~~~ 449 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGN---ALD---ILESKGKQ 449 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHH---HHH---HHHHcCCC
Confidence 5555544455443 4566666666665554 45666777666666543 44444555552 111 22222212
Q ss_pred CChhhhhH--------------HHHHHHHHhC---CCCCCHh------HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC
Q 045105 309 PNVYTWNA--------------MQLFSEMLSL---DLTPDIY------TVGIILSACSSLATMERGKQVHAYAIRCGYDS 365 (601)
Q Consensus 309 ~~~~~~~~--------------~~~~~~~~~~---~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (601)
+.....|. ...|...... ...+|.. +--.+....-..++.+.|.+.|..+.+....
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~- 528 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG- 528 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-
Confidence 22222221 2333322222 1222321 1122333444556677777777776664321
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHHhHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALS 441 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~ 441 (601)
-+..|..+..+....+...+|...++.+. +.++..+.-+...+.+...+..|..-|....+.- ..+|.++...|.+
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 11222222222222355667777777665 3555566666667777777888877776665532 2356666666666
Q ss_pred HHhc------------cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 045105 442 ACVH------------AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--MAPDSVMWGALL 507 (601)
Q Consensus 442 ~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 507 (601)
.|.. .+..++|+++|..+.+.. +-|...-|-+.-.++..|++.+|..+|.+.. ......+|-.+.
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 5532 234567888886655543 4566677788888999999999999998883 223567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 508 GGCVSHGNLEFGQIAADRLIELE-P-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|...|++..|+++|+...... + +++.+...|+.++.+.|++.+|.+.+.......
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988763 3 367888899999999999999999987665544
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1.7e-13 Score=135.15 Aligned_cols=544 Identities=11% Similarity=0.033 Sum_probs=345.5
Q ss_pred CCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
.|++++|++++.++.+ .+..+|-.|...|-..|+.+++...+--.-. ..|.|...|..+.....+.|++++|.-+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3999999999999986 3556899999999999999999988766554 5667789999999999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH----HHHHHHhcCCHHHHHHHHhhcCC
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG----LVDVYRRCGDMLSALKIFSKFSI 157 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~ 157 (601)
|.+..+.. +++...+-.-...|-+.|+...|..-|.++.....+.|..-+.. .++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998873 44444444455667888999999999888887654334333333 34555666777888887776653
Q ss_pred --C---CchhHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------------------------------
Q 045105 158 --K---NEVSCNTIIVGYCENGNVAEARELFDQMEH-------------------------------------------- 188 (601)
Q Consensus 158 --~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------------------------------------- 188 (601)
. +...++.++..+.+...++.|......+..
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1 344566677777777666666666555544
Q ss_pred -----------------cCC--CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHH
Q 045105 189 -----------------LGV--QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRK 249 (601)
Q Consensus 189 -----------------~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 249 (601)
..+ .-+...|.-+..++.+.|++.+|+.+|..+.. ...--+...|-.+..++...|..+.
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHhhHHH
Confidence 110 01233455566777788888888888888776 3333345677777888888888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH-------------
Q 045105 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA------------- 316 (601)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------- 316 (601)
|.+.|+.+.... +.+..+...|...+-+.|+.++|.+.++ .+. .||...-.+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~----------~~~----~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE----------QII----NPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh----------ccc----CCCccchhhccccHHHHHHHHH
Confidence 888888887664 3445566677778888888888888887 444 344221110
Q ss_pred -----------------HHHHH---------------HHHh-C--CCCCCHhHHHHHHHHhcCCCchhhHHHHHHH----
Q 045105 317 -----------------MQLFS---------------EMLS-L--DLTPDIYTVGIILSACSSLATMERGKQVHAY---- 357 (601)
Q Consensus 317 -----------------~~~~~---------------~~~~-~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~---- 357 (601)
..++. ++.. . +.+-...+....+.+-.+.++......-...
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 00000 0000 0 1122223333444444444443322222211
Q ss_pred --HHHhCCCCch--hHHhHHHHHHHhcCChHHHHHHHhcCCC------CCh---hhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 358 --AIRCGYDSDV--HIGTALVDMYAKCGSLKHARLAYKRIST------PDL---VSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 358 --~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
....++..+. ..+.-++..+++.+++++|..+...+.. ++. ..-...+.+.+..+++..|...++.|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1112332222 3445677788899999999998887763 211 12344566777889999999999998
Q ss_pred HHC-C--CCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 045105 425 LAS-G--FRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD 499 (601)
Q Consensus 425 ~~~-~--~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 499 (601)
... + ..|.. ..|+..++.+.+.++-.--.+.+.........-+..........+..++.+..|+..+-++ ...|+
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd 772 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD 772 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC
Confidence 875 1 12332 2455455555555544333333322111111111222222233455778888888776555 34566
Q ss_pred HHHHHHHHHH-HH----------hcCChhHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 500 SVMWGALLGG-CV----------SHGNLEFGQIAADRLIELEPN--NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 500 ~~~~~~l~~~-~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
.+..+.++.. +. ++-.+-.+...+.+..++... --++++.++.+|...|-..-|..++++..+-.+.
T Consensus 773 ~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 5444433322 11 222345667777777777543 4579999999999999999999999999877654
Q ss_pred c
Q 045105 567 K 567 (601)
Q Consensus 567 ~ 567 (601)
+
T Consensus 853 ~ 853 (895)
T KOG2076|consen 853 D 853 (895)
T ss_pred c
Confidence 4
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=6.6e-15 Score=133.44 Aligned_cols=466 Identities=10% Similarity=0.033 Sum_probs=287.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH------hhHHHHHH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA------RTLSSVLP 102 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~ 102 (601)
|..-|.......+|+..++-+.+...++-.-..--.+...+.+.+++.+|++.|+-.... .|+. ...+.+--
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigv 284 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCe
Confidence 334455566777788888776665333222223334556677777888888888766554 2322 22333334
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCch--------hHHHHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI----KNEV--------SCNTIIVGY 170 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--------~~~~li~~~ 170 (601)
.+.+.|.++.|..-|+...+. .|+..+--.|+-++.--|+.++..+.|.++.. +|.. .-..++.--
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 466778888888888877765 35655444455555566777777777776651 1111 011111111
Q ss_pred HhcCC-----------HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH-HHHH
Q 045105 171 CENGN-----------VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF-GSVL 238 (601)
Q Consensus 171 ~~~g~-----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll 238 (601)
.+..+ .++++-.-..+...-+.|+.. +- .+-.++.++.- ...|-.... ..-.
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---~g---------~dwcle~lk~s----~~~~la~dlei~ka 426 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---AG---------CDWCLESLKAS----QHAELAIDLEINKA 426 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---cc---------cHHHHHHHHHh----hhhhhhhhhhhhHH
Confidence 11111 111111111111111111110 00 11111111110 000000000 0011
Q ss_pred HHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 239 IACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR--YQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
.-+.+.|+++.|.++++-..+..-+.....-+.|-..+.- -.++.+|.+.-+ ... +..-|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad----------~al------n~dryn- 489 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD----------IAL------NIDRYN- 489 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH----------HHh------cccccC-
Confidence 2355677888888877777665544433333333333222 224444444333 111 111111
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-- 394 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 394 (601)
....+.--+.....|++++|.+.+.+.....-......||. .-.+...|++++|.++|-++.
T Consensus 490 ---------------~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 490 ---------------AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred ---------------HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH
Confidence 11111112233457899999999999987765555555553 334677899999999997765
Q ss_pred -CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHH
Q 045105 395 -TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC 473 (601)
Q Consensus 395 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (601)
..+......+...|-...+..+|++++-+.... ++.|+..+..|...|-+.|+-.+|.+.+-. .-+-++-+..+...
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yd-syryfp~nie~iew 631 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYD-SYRYFPCNIETIEW 631 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhh-cccccCcchHHHHH
Confidence 567777778888899999999999999888764 455677889999999999999999998843 23446778889888
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 474 MVDLLSRAGELGEAYEFIKKIP-MAPDSVMWGALLGGCV-SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
|..-|....-+++|+.+|++.. +.|+..-|..++..|. +.|++.+|.+.++......|.+...+..|+.++...|.
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999984 6899999999998874 67999999999999999999999999999999988774
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=5.5e-12 Score=120.01 Aligned_cols=490 Identities=11% Similarity=0.027 Sum_probs=360.4
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHH
Q 045105 35 ANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGK 114 (601)
Q Consensus 35 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 114 (601)
.....+.|+-++....+ ..+.+...|. +|.+..-++.|..+++..++. ++.+...|.+....--..|+.+...
T Consensus 388 elE~~~darilL~rAve--ccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVE--CCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHH--hccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 34445556666666665 4445555444 444555667777777777765 5666677776666666677777777
Q ss_pred HHHHHH----HHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCCHHHHHHHHH
Q 045105 115 EFHGYI----TRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI------KNEVSCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 115 ~~~~~~----~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
++...- ...|+..+...|..=...+-..|..--+..+...... .-..||..-...|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 665443 3567777777777766677777766666666655541 123467777778888888888888888
Q ss_pred HHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Q 045105 185 QMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQS 264 (601)
Q Consensus 185 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (601)
...+.- +-+...|......--..|..++...+|++... .++-....+.....-.-..|++..|..++..+.+... .
T Consensus 541 ~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-n 616 (913)
T KOG0495|consen 541 HALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-N 616 (913)
T ss_pred HHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-C
Confidence 877653 34556677666666677888888888888875 2333344454455556777999999999988887763 3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC
Q 045105 265 DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS 344 (601)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 344 (601)
+..+|.+-+..-.....++.|..+|. +.. +..|+...|.--++.---
T Consensus 617 seeiwlaavKle~en~e~eraR~lla----------kar-----------------------~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLA----------KAR-----------------------SISGTERVWMKSANLERY 663 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHH----------HHh-----------------------ccCCcchhhHHHhHHHHH
Confidence 77888888888888999999988888 333 234555555555555556
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHF 421 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 421 (601)
.++.++|.++++...+.- +.-...|..+...+.+.++++.|...|..-.+ ..+..|-.|...--+.|....|..++
T Consensus 664 ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 688899999998877653 33456777888889999999999998876653 44557777777777889999999999
Q ss_pred HHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH
Q 045105 422 RRILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS 500 (601)
Q Consensus 422 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 500 (601)
++.+-.+ +-+...|...|+.=.+.|..+.|..+. +.+++ ++.+...|..-|....+.++-....+.+++- +-|+
T Consensus 743 drarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dp 817 (913)
T KOG0495|consen 743 DRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDP 817 (913)
T ss_pred HHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCc
Confidence 9988874 556678999999999999999999998 55444 4566778888888888888877888888775 3566
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEe
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIED 576 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 576 (601)
.+.-++...+....++++|.+.|+++...+|++-.++.-+...+.+.|.-++-.++++...... |.-|..|..+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 6677777888888899999999999999999988899999999999999999999999888765 4556666544
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=9.2e-12 Score=123.18 Aligned_cols=328 Identities=12% Similarity=0.100 Sum_probs=248.4
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcch
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSL 112 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (601)
+...|+.++|.+++.+..+ ..+.+...|..|...|-..|+.+++...+-..-... +-|...|..+.......|++++
T Consensus 149 lfarg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3345999999999999999 577889999999999999999999998876665442 4456788888888999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc----h----hHHHHHHHHHhcCCHHHHHHHHH
Q 045105 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNE----V----SCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 113 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
|.-.|...++.. +++...+-.-...|-+.|+...|.+.|.++..-++ . .-..+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999986 55666666777889999999999999888763322 2 23345667777888899999988
Q ss_pred HHHhc-CCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHc--------------------------CCCCCChhhHHHH
Q 045105 185 QMEHL-GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR--------------------------DGIEPTSFTFGSV 237 (601)
Q Consensus 185 ~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~p~~~~~~~l 237 (601)
..... +-..+...++.++..+.+...++.+......+... .++.++... -.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 87752 22456678899999999999999999988887650 111122222 123
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh
Q 045105 238 LIACADMNSLRKGKEIHALAIALGL--QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN 315 (601)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (601)
.-++......+....+........+ .-+...|.-+..+|...|++..|..+|. .+...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~----------~i~~~---------- 443 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS----------PITNR---------- 443 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH----------HHhcC----------
Confidence 3345556666667777777777774 4456788999999999999999999988 44421
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC
Q 045105 316 AMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST 395 (601)
Q Consensus 316 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 395 (601)
..--+...|-.+..++...|..+.|.+.++..+.... -+...-..|...+.+.|+.++|.+.++.+..
T Consensus 444 -----------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 444 -----------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred -----------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 1112345677788888899999999999998887542 2344445677888899999999999998775
Q ss_pred CC
Q 045105 396 PD 397 (601)
Q Consensus 396 ~~ 397 (601)
||
T Consensus 512 ~D 513 (895)
T KOG2076|consen 512 PD 513 (895)
T ss_pred CC
Confidence 54
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=1.3e-12 Score=128.38 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=127.8
Q ss_pred CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 045105 20 ERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSS 99 (601)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 99 (601)
.||..+|..++.-||..|+.+.|- +|..|.-. ..+.+...++.++.+....++.+.+. .|...||..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 588899999999999999999998 88877664 33444555555555555555544443 455555556
Q ss_pred HHHHHHhcCCcchHHHHHHHHH-------HhcC-----------------CCchHHHHHHHHHHHhcCCHHHHHHHH---
Q 045105 100 VLPACARLQKLSLGKEFHGYIT-------RNGF-----------------MSNPFVVNGLVDVYRRCGDMLSALKIF--- 152 (601)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~-------~~g~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~--- 152 (601)
|+.+|...||+.....+-+.|. ..|+ -||.. ..+....-.|-++.+++++
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 6666655555433111111111 1111 01111 1111112222333333333
Q ss_pred ------------------------------hhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHH
Q 045105 153 ------------------------------SKFSI-KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSM 201 (601)
Q Consensus 153 ------------------------------~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (601)
+...+ ++..+|.+++.+-.-+|+++.|..++.+|++.|++.+.+-|-.|
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 22222 57777888888888888888888888888888888888777777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCC
Q 045105 202 ISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNS 246 (601)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 246 (601)
+-+ .+...-+..+++-|.. .|+.|+..|+...+-.+.+.|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 655 6666667777766666 8888888888777776666544
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.8e-12 Score=119.20 Aligned_cols=374 Identities=13% Similarity=0.101 Sum_probs=253.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHH
Q 045105 163 CNTIIVGYCENGNVAEARELFDQMEHLGVQRG-IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-FTFGSVLIA 240 (601)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~ 240 (601)
+-...+-|-++|.+++|+++|.+.+.. .|+ +.-|.....+|...|+|+++.+--.+.++ +.|+- ..+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHH
Confidence 445567788899999999999998876 577 67788888889999999998887777655 55653 234444456
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHH-hhchhc--CCCCChhhhhH-
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLL-GKMKED--GFEPNVYTWNA- 316 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~--g~~~~~~~~~~- 316 (601)
+-..|++++|..=+ +...+...|....-...+.++++.. ..... +.+.+. .+.|+.....+
T Consensus 193 ~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~--a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQ--AMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred HHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHH--HHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 66677777765322 2223333333333333333433311 11111 112211 11222221111
Q ss_pred --------------------------------------HHHHHHHHhC----CCCCCHh---------HHHHHHH--Hhc
Q 045105 317 --------------------------------------MQLFSEMLSL----DLTPDIY---------TVGIILS--ACS 343 (601)
Q Consensus 317 --------------------------------------~~~~~~~~~~----~~~p~~~---------~~~~li~--~~~ 343 (601)
+.....+.+. -..++.. .-..++. -+.
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0111111110 0111111 1111111 123
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHH
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~ 420 (601)
-.|+.-.+..-++..++....++. .|--+..+|....+.++.+..|+... +.+..+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888888888888877654333 25566677999999999999998776 56777888888888888999999999
Q ss_pred HHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 045105 421 FRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP 498 (601)
Q Consensus 421 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 498 (601)
|++.++. .|+. ..|..+.-+.-+.+++++++..|+... ..++-.+.+|+...+.+...+++++|.+.++.. .++|
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k-kkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAK-KKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 9999984 5554 578777777789999999999997744 456777889999999999999999999999876 3344
Q ss_pred C---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 499 D---------SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 499 ~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
. +.+..+++-.-.+ +|+..|+.++.++.+++|.-..++..|+....+.|+.++|.++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 3344444444433 899999999999999999999999999999999999999999998753
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.8e-10 Score=109.98 Aligned_cols=467 Identities=11% Similarity=0.055 Sum_probs=370.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH----HHHcCCCCCHhhHHHHHHHH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFR----MQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~ 104 (601)
|.-+|++..-++.|..+++..++ ..+.+...|.+-...--.+|+.+...+++.+ +...|+..+...|..=...|
T Consensus 412 LwlAlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 45577788889999999999999 7888999999888888899999999988875 45569999999999988999
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSN--PFVVNGLVDVYRRCGDMLSALKIFSKFSI---KNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 179 (601)
-..|..-.+..+....+..|+... ..+|..-...|.+.+.++-|..+|..... .+...|......--..|..++.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 999999999999999998887543 45888888999999999999999987763 3566787777777788999999
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
..+|++....- +.....|-.....+-..|+...|..++....+.. +-+...+...+..-....+++.|..+|.+...
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 99999988763 3344556666677788899999999999988632 22556677777888889999999999988876
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCC-HhHHHHH
Q 045105 260 LGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPD-IYTVGII 338 (601)
Q Consensus 260 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l 338 (601)
. .++..+|..-+..---.++.++|+++++ +..+ .-|+ ...|..+
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllE----------e~lk-----------------------~fp~f~Kl~lml 691 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLE----------EALK-----------------------SFPDFHKLWLML 691 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHH----------HHHH-----------------------hCCchHHHHHHH
Confidence 4 5677777777777777889999998887 3331 1233 2346666
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChh
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~ 415 (601)
-+.+-+.++.+.|...|..-.+. ++..+-.|-.|...-.+.|++-.|..++++.. +.+...|-..|..-.+.|+.+
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 66777778888888777654432 34567778888888889999999999999887 456788999999999999999
Q ss_pred hHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
.|..+..+.++. ++.+...|.--|...-+.++-......++. ..-|+++.-.+...|....++++|.+.|.+.
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988876 455667787777776666665455444433 3557778888889999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 495 PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 495 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
...| +..+|.-+...+.++|.-+.-.+++.+...-+|.+-..+..+..
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 4455 45678888888999999999999999999999987766665554
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=5.2e-12 Score=124.27 Aligned_cols=487 Identities=13% Similarity=0.033 Sum_probs=296.7
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh
Q 045105 44 ECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 44 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (601)
.++..+... +..||.+||..+|.-||..|+.+.|- +|..|.-...+.+...|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 345555555 88999999999999999999999999 9999988888888889999999999988887765
Q ss_pred cCCCchHHHHHHHHHHHhcCCHHH---HHHHHhhcCC---C----Cc---------------hhHHHHHHHHHhcCCHHH
Q 045105 124 GFMSNPFVVNGLVDVYRRCGDMLS---ALKIFSKFSI---K----NE---------------VSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 124 g~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~---~----~~---------------~~~~~li~~~~~~g~~~~ 178 (601)
.|...+|..|..+|...||... ..+.+..+.. + .. ..-...+.-.+-.|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888999999999999999654 3332222220 0 00 001123333344455555
Q ss_pred HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHH
Q 045105 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAI 258 (601)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (601)
+++++..+..... ..++..+++-+..... ...++......-.+ .|+..+|..++.+....|+++.|..++.+|.
T Consensus 158 llkll~~~Pvsa~---~~p~~vfLrqnv~~nt--pvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAW---NAPFQVFLRQNVVDNT--PVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccc---cchHHHHHHHhccCCc--hHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 5555544432110 0111122444333333 33333333222133 6899999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH--HHHHH----HHHhCCCCCCH
Q 045105 259 ALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA--MQLFS----EMLSLDLTPDI 332 (601)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~----~~~~~~~~p~~ 332 (601)
+.|++.+..-+..|+-+ .++...+..++. .|.+.|+.|+..++.. ...++ ...+.|. +..
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlr----------gmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s-q~~ 297 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLR----------GMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS-QLA 297 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHH----------HHHHhcCCCCcchhHHHHHhhhcchhhhhccccc-chh
Confidence 99999988877777755 666666666666 8899999999888764 12222 1111122 222
Q ss_pred hHHHHHHH-HhcC----CCchhh--HHHHHHHHH---HhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-------
Q 045105 333 YTVGIILS-ACSS----LATMER--GKQVHAYAI---RCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST------- 395 (601)
Q Consensus 333 ~~~~~li~-~~~~----~~~~~~--a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 395 (601)
..+++-+. +.++ ..+++. ...+..... =.|+.....+|...+. ....|+-++.+++-..+..
T Consensus 298 hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 298 HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCc
Confidence 22222222 2221 222222 122222222 2355555555543333 2236776777666665542
Q ss_pred CChhhHHHHHHHHHHcC----------------------ChhhHHHHHHHH------------HHC----CCCc------
Q 045105 396 PDLVSQNAMLTAYAMHG----------------------HGKEGIAHFRRI------------LAS----GFRP------ 431 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~m------------~~~----~~~p------ 431 (601)
.++..|..++.-|.+.- ...+..++.... ... -..|
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAH 456 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhh
Confidence 23334444444333221 111111111111 000 0011
Q ss_pred -cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-----CCCCHHHHHH
Q 045105 432 -DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-----MAPDSVMWGA 505 (601)
Q Consensus 432 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 505 (601)
-...-+.++..|++.-+..+++..-+.....-++ ..|..|++.+..-.+.++|..+.++.. ...|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 0112344555666665555665444433332222 578889999999999999999998884 2235556778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc---CCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIEL---EPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
+.+...+.+....+..+++.+.+. .|....++..+.+-....|+.+...+..+-+...|+..
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 888888888888899998888774 33335667777777788999999999999888888876
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.5e-10 Score=103.96 Aligned_cols=489 Identities=12% Similarity=0.063 Sum_probs=328.5
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCcch
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSL 112 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 112 (601)
..++++..|..+|+.... ....+...|-..+..-.++..+..|..++++.... -|-+. .|--.+..--..|++..
T Consensus 84 esq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence 346678889999998887 66778888888888888999999999999988764 33332 23333334445688999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 045105 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS--IKNEVSCNTIIVGYCENGNVAEARELFDQMEHL- 189 (601)
Q Consensus 113 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 189 (601)
|.++|+.-.+ ..|+...|++.|+.-.+...++.|..++++.. +|++.+|--....--++|++..|..+|+.....
T Consensus 160 aRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 9999988777 57899999999999899999999999999876 788888888888888899999999988887643
Q ss_pred CC-CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHhcccCCHHHHHHH--------HHHHH
Q 045105 190 GV-QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT--SFTFGSVLIACADMNSLRKGKEI--------HALAI 258 (601)
Q Consensus 190 g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~ 258 (601)
|- ..+...++++...-.+...++.|.-+|+-.+. .++.+ ...|......--+-|+....+.. ++.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld--~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALD--HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 10 11223444444444556778888888876664 23323 33444444443444554444333 22233
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCCh--hhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 259 ALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNV--YTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
+.+ +.|-.+|-.++..-...|+.+...++|+ ..... ++|-. ..| -...|.
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yE----------rAIan-vpp~~ekr~W----------------~RYIYL 367 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYE----------RAIAN-VPPASEKRYW----------------RRYIYL 367 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHH----------HHHcc-CCchhHHHHH----------------HHHHHH
Confidence 322 4566677778888888899999998888 33311 11100 001 011121
Q ss_pred HHHHHh---cCCCchhhHHHHHHHHHHhCCCCchhHHhHHH----HHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHH
Q 045105 337 IILSAC---SSLATMERGKQVHAYAIRCGYDSDVHIGTALV----DMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTA 407 (601)
Q Consensus 337 ~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~ 407 (601)
-+=-+| ....+.+.+.+++....+ -++....++.-+= ..-.++.++..|.+++.... -|-..+|...|..
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 111111 245678888888888877 3344555555443 33457889999999998876 4777888888888
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC-CCcCchHHHHHHHHhhhcCChHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD-VKPSLKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 486 (601)
-.+.++++.+..++++.++-+ +-|..+|......=...|+.+.|..+|....+.. +......|.+.|+.=...|.++.
T Consensus 447 ElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH
Confidence 899999999999999999964 4456788887777788999999999997655532 22223356666666678999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHhc----CCC--CCchHHHHHHH
Q 045105 487 AYEFIKKI-PMAPDSVMWGALLGGCV-----SHG-----------NLEFGQIAADRLIEL----EPN--NTGNYVMLANL 543 (601)
Q Consensus 487 A~~~~~~~-~~~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~--~~~~~~~l~~~ 543 (601)
|..+++++ ...+...+|-++..--. ..+ ....|..+++++... .|. ....+..+.+.
T Consensus 526 aR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~ 605 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNM 605 (677)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999988 33566667777766544 233 456788888888764 221 11223333333
Q ss_pred HHHcCCHHHHHHHHHHH
Q 045105 544 FAYAGRWSDLARTRQKM 560 (601)
Q Consensus 544 ~~~~g~~~~A~~~l~~~ 560 (601)
-...|...+...+-..|
T Consensus 606 E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 606 EETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhcCchhhHHHHHHhc
Confidence 34456666655554444
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=6.9e-15 Score=137.09 Aligned_cols=256 Identities=16% Similarity=0.145 Sum_probs=112.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC-CCCHh-HHHHHHHHhcCCCch
Q 045105 271 ALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL-TPDIY-TVGIILSACSSLATM 348 (601)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~p~~~-~~~~li~~~~~~~~~ 348 (601)
.+...+.+.|++++|.+++. .... .. +|+.. .+..+...+...++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~----------~~~~----------------------~~~~~~~~~~~~~~a~La~~~~~~ 60 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLK----------KAAQ----------------------KIAPPDDPEYWRLLADLAWSLGDY 60 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc----------cccc----------------------cccccccccccccccccccccccc
Confidence 55777888999999998885 2211 11 23322 334455566678999
Q ss_pred hhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
+.|...++.+...+.. ++..+..++.. ...+++++|..+++..- .++...+..++..+...++++++..+++.+..
T Consensus 61 ~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ 138 (280)
T PF13429_consen 61 DEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE 138 (280)
T ss_dssp -----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999877644 56667777777 78999999999987764 46667788888999999999999999999876
Q ss_pred CC-CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHH
Q 045105 427 SG-FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--MAPDSVMW 503 (601)
Q Consensus 427 ~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 503 (601)
.. .+++...|..+...+.+.|+.++|++.++...+.. +.|......++..+...|+.+++.++++... ...|+..|
T Consensus 139 ~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 139 LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp -T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 43 34566678888899999999999999997766643 3357788899999999999999888887662 24567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
..+..+|...|++++|...++++.+..|+|+.+..+++.++...|+.++|.++.++..
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999987654
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2e-10 Score=105.55 Aligned_cols=380 Identities=12% Similarity=0.080 Sum_probs=218.9
Q ss_pred CCCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
++++..|.++|+++++ .+...|...+.+=.++..+..|..+|+..... .|.-...|-..+..--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4677889999999886 45566777777778888888888888887763 222333455555555667788888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK--- 158 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 158 (601)
|++..+. .|+...|.+.++.-.+.+..+.|..+++..+- +.|++..|....+.-.+.|....|..+|+...+.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8877764 78888888888877777788888888877765 3577777777777777777777777777655421
Q ss_pred ---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------------------------------C
Q 045105 159 ---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGV-------------------------------------------Q 192 (601)
Q Consensus 159 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------------------------------------~ 192 (601)
+...+.++...-.++..++.|.-+|+-.+..-. +
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 122233333333334444444444444433210 2
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-------hhHHHHHHHh---cccCCHHHHHHHHHHHHHcCC
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-------FTFGSVLIAC---ADMNSLRKGKEIHALAIALGL 262 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~ 262 (601)
.|-.+|-..++.-...|+.+...++|+... .+++|-. ..|..+=.++ ....+++.+.++++...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hc
Confidence 233344444444444455555555555544 2344421 1111111111 124455555555555554 22
Q ss_pred CCchhHHHHHHHH----HHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHH
Q 045105 263 QSDTFVGGALVEM----YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGII 338 (601)
Q Consensus 263 ~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 338 (601)
+...+|+..+--+ -.++.++..|.+++. ... |..|-..+|...
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG----------~AI-----------------------G~cPK~KlFk~Y 443 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILG----------NAI-----------------------GKCPKDKLFKGY 443 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHH----------HHh-----------------------ccCCchhHHHHH
Confidence 3333333322222 233444545544444 222 556666666666
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCChh----hHHHHHHHHHHcCC
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLV----SQNAMLTAYAMHGH 413 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~----~~~~ll~~~~~~~~ 413 (601)
|..=.+.++++.+..+++...+-+. -+-.++......-...|+.+.|..+|+-.. +|... .|...|..-...|.
T Consensus 444 IelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 6666667777777777777666542 244555555555556677777777776554 33332 34444444455667
Q ss_pred hhhHHHHHHHHHHC
Q 045105 414 GKEGIAHFRRILAS 427 (601)
Q Consensus 414 ~~~a~~~~~~m~~~ 427 (601)
++.|..+++++++.
T Consensus 523 ~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 523 FEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777664
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=9.3e-11 Score=106.96 Aligned_cols=451 Identities=12% Similarity=0.079 Sum_probs=270.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH-HHHHHHhcCCcchHHHHHHHHHHhcCCCchH----HHHHHHHH
Q 045105 64 AVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSS-VLPACARLQKLSLGKEFHGYITRNGFMSNPF----VVNGLVDV 138 (601)
Q Consensus 64 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~ 138 (601)
.|.+-|..+....+|+..|+-+.+...-|+...+.. +-+.+.+.+.+.+|.+++...+..-...+.. ..+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345556666777788888888877777777654432 2344666677888888887776653222222 33333344
Q ss_pred HHhcCCHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeeh--------HHHHHHHHhC
Q 045105 139 YRRCGDMLSALKIFSKFS--IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISW--------NSMISGYVDN 208 (601)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--------~~li~~~~~~ 208 (601)
+.+.|.++.|+.-|+... .||..+--.++-++..-|+-++..+.|..|...-..||..-| ..|+.-..++
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 667788888888887765 345554334444555577888888888887754333333222 1222222211
Q ss_pred CCh--------hHHHHHH---HHHHHcCCCCCChh-hHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045105 209 SLY--------DEAFSMF---RDLLMRDGIEPTSF-TFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMY 276 (601)
Q Consensus 209 ~~~--------~~a~~~~---~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 276 (601)
... ..|.+.+ -++.. .-+.|+-. -|..-+.........+.|. +.. -.-...|
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~-------------dle--i~ka~~~ 429 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAI-------------DLE--INKAGEL 429 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhh-------------hhh--hhHHHHH
Confidence 110 0111111 11111 11112110 0111111111111111111 111 1122347
Q ss_pred HhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHH
Q 045105 277 CRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHA 356 (601)
Q Consensus 277 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 356 (601)
.+.|+++.|.+++.. .. ..|..+- .-..+-.+++.-+-...++..|.++-+
T Consensus 430 lk~~d~~~aieilkv----------~~----~kdnk~~---------------saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKV----------FE----KKDNKTA---------------SAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred HhccCHHHHHHHHHH----------HH----hccchhh---------------HHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 789999999988883 32 1111111 111122233333334456666666665
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHH---HHHHHcCChhhHHHHHHHHHHCCCCccH
Q 045105 357 YAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAML---TAYAMHGHGKEGIAHFRRILASGFRPDH 433 (601)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (601)
...... +-++.....-.+.-...|++++|...+++....|...-.+|. ..+-..|+.++|+..|-++..- +..+.
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ 558 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNA 558 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhH
Confidence 554322 112221111122233479999999999999877665444433 3467789999999999887653 34455
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHH-HhCCCC-CCHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI-KKIPMA-PDSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~-~~~~~~~~l~~~~~ 511 (601)
..+..+.+.|....+..+|++++... ..-++.|+.+.+.|.+.|-+.|+-..|.+.. +....- .+..+..-|...|.
T Consensus 559 evl~qianiye~led~aqaie~~~q~-~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQA-NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHh-cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 67777888899999999999998553 3346667889999999999999999998764 444433 46667776777778
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
...-+++++..++++.-+.|+-...-..++.|+.+.|+++.|.++++..-.
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888899999999999999997667777888899999999999999987653
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=3.6e-11 Score=118.02 Aligned_cols=283 Identities=10% Similarity=-0.049 Sum_probs=209.0
Q ss_pred CCCCchhHHHHHhhCCC--CCcc-chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 045105 4 KCGSLDDAKKVFKMMPE--RDCV-SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIG 80 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 80 (601)
..|+++.|++.+.+..+ |++. .+-....+..+.|+++.|.+.+....+. .+.+.....-.....+...|+++.|.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 46999999999999886 3332 3344456678889999999999998764 222222344445888899999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHH---H----hcCCHHHHHHHHh
Q 045105 81 MLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVY---R----RCGDMLSALKIFS 153 (601)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~----~~~~~~~a~~~~~ 153 (601)
.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..+.......-..++ . .....+...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999874 3355678888899999999999999999999987544332211111111 2 2233445555666
Q ss_pred hcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeee---hHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045105 154 KFSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIIS---WNSMISGYVDNSLYDEAFSMFRDLLMRDGI 227 (601)
Q Consensus 154 ~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (601)
..+. .+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6553 377889999999999999999999999998864 44332 122222334457788899999888763333
Q ss_pred CCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 228 EPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 332245557778889999999999999976666668888889999999999999999999998
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.7e-12 Score=124.26 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=182.3
Q ss_pred CCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCC--CCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 045105 329 TPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY--DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLT 406 (601)
Q Consensus 329 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~ 406 (601)
.-+......+.++|...+++++|+.+|+.+.+... .-+..+|.+.+-.+-+.=.+.--.+-+-.+.+..+.+|-++..
T Consensus 350 ~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GN 429 (638)
T KOG1126|consen 350 YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGN 429 (638)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcc
Confidence 33446778888999999999999999999887532 2367778777755433222221112222233566789999999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHH---HHHhhhcC
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM---VDLLSRAG 482 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g 482 (601)
+|.-+++.+.|++.|++.+. +.| ..++|+.+..=+.....+|.|...|+.. +..|+.+|+++ .-.|.+.+
T Consensus 430 cfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhhheeccc
Confidence 99999999999999999988 466 5678888888888888999999999653 45566666664 45688999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 483 ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
+++.|+-.|+++ .+.| +.+....+...+-+.|+.|+|+++++++..++|.|+..-+.-+.++...+++++|++.|+++
T Consensus 504 k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999999988 6777 66777777788889999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 045105 561 KDRR 564 (601)
Q Consensus 561 ~~~~ 564 (601)
++.-
T Consensus 584 k~~v 587 (638)
T KOG1126|consen 584 KELV 587 (638)
T ss_pred HHhC
Confidence 8765
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=5.6e-11 Score=116.02 Aligned_cols=274 Identities=11% Similarity=-0.009 Sum_probs=213.1
Q ss_pred CCCchhHHHHHhhCCCC--CccchHHH-HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHH--HHHHHHhhcCChHHHH
Q 045105 5 CGSLDDAKKVFKMMPER--DCVSWNSV-VTACAANGLVLEALECLERMSSLDNETPNLVSWS--AVIGGFTQNGYDEEAI 79 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~ 79 (601)
.|++++|++.+....+. ++..+..+ ..+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 59999999999987763 33333333 34447899999999999999863 34443322 3467889999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchH-------HHHHHHHHHHhcCCHHHHHHHH
Q 045105 80 GMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPF-------VVNGLVDVYRRCGDMLSALKIF 152 (601)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 152 (601)
..++++.+.. +-+...+..+...+.+.|+++.|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998874 4456678888899999999999999999999987653331 3334444444556677778888
Q ss_pred hhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 045105 153 SKFSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP 229 (601)
Q Consensus 153 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p 229 (601)
+.++. .+......+...+...|+.++|.+.+++..+. +++.. -.++.+.+..++++++++.++...+. .+-
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~ 326 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGD 326 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCC
Confidence 87763 37778899999999999999999999998874 34442 22345555679999999999998862 233
Q ss_pred ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 230 TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 230 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
|...+..+-..+...+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.++++
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455777788899999999999999999976 5888888999999999999999999888
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.4e-11 Score=120.28 Aligned_cols=250 Identities=10% Similarity=0.062 Sum_probs=198.1
Q ss_pred CCCCCchhHHHHHhhCCC--CCccchH--HHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 3 GKCGSLDDAKKVFKMMPE--RDCVSWN--SVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~--~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
.+.|+++.|.+.|.++.+ |+...+. .....+...|++++|...++.+.+ ..|-+...+..+...|.+.|+|++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 467999999999999986 3333333 235678889999999999999998 5567788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 045105 79 IGMLFRMQAEGLEPNA-------RTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKI 151 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 151 (601)
.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+.
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999988655333 13333444444444555566666665443 356788889999999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh
Q 045105 152 FSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS 231 (601)
Q Consensus 152 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 231 (601)
+++........--.++.+.+..++.+++++..+...+.. +-|...+..+.+.+.+.++|++|.+.|+.... ..|+.
T Consensus 286 L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~ 361 (398)
T PRK10747 286 ILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDA 361 (398)
T ss_pred HHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCH
Confidence 988875444444445566667799999999999998774 34556678889999999999999999999886 67999
Q ss_pred hhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 232 FTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
.++..+...+...|+.++|.+++++-..
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999987654
No 45
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2e-09 Score=95.34 Aligned_cols=444 Identities=13% Similarity=0.084 Sum_probs=234.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
+.-+....++..|+.+++.-... ...-...+-..+..++...|++++|...+..+.+.. .|+...+..|.-+..-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 55566778899999988875542 111112333445667788999999999999887754 5566666666555555677
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
+.+|..+-+.. +.++-....+++...+.++-++...+-+.+.... .---++....-..-++++|++++......
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777665432 3334444556666677888877777766666432 22223344444456788899999888765
Q ss_pred CCCCCeeehHHHH-HHHHhCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchh
Q 045105 190 GVQRGIISWNSMI-SGYVDNSLYDEAFSMFRDLLMRDGIEPTS-FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTF 267 (601)
Q Consensus 190 g~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (601)
.|.-...|.-+ -+|.+..-++-+.+++...++ -.||. ...+.......+.=+-..|++-.+.+.+.+-..
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~---q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR---QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH---hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 34444445433 456677777878888777665 23443 222222222222111112222222222211100
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHh
Q 045105 268 VGGALVEMYCRY-----QDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSAC 342 (601)
Q Consensus 268 ~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 342 (601)
-..+.-+++. .+-+.|++++. .+. .+-|. .-..++--+
T Consensus 253 --~~f~~~l~rHNLVvFrngEgALqVLP----------~L~-----------------------~~IPE--ARlNL~iYy 295 (557)
T KOG3785|consen 253 --YPFIEYLCRHNLVVFRNGEGALQVLP----------SLM-----------------------KHIPE--ARLNLIIYY 295 (557)
T ss_pred --chhHHHHHHcCeEEEeCCccHHHhch----------HHH-----------------------hhChH--hhhhheeee
Confidence 1112222221 12233333333 111 00111 111234445
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC-------hHHHHHHHhcCCC-----CChhhHHHHHHHHHH
Q 045105 343 SSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS-------LKHARLAYKRIST-----PDLVSQNAMLTAYAM 410 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~ 410 (601)
.+.+++.+|..+.+.+. ...|-..+...++ ++..|+ +.-|.+.|+-... .++.--.++..++.-
T Consensus 296 L~q~dVqeA~~L~Kdl~--PttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLD--PTTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHhhcC--CCChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 56666666666554322 1112222222222 222222 3445555544331 122233444555555
Q ss_pred cCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHH
Q 045105 411 HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEF 490 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 490 (601)
..++++++-.++.+..--...|...| .+.++.+..|.+.+|+++|-.+....++.+..-...|.++|.+.++++-|+++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 56677777777766665333333333 35667777777777777775544444443333334455777777777777777
Q ss_pred HHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 491 IKKIPMAPDSVMW-GALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 491 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+-++....+..+. ..+..-|.+.+.+=-|-+.++.+..++|
T Consensus 451 ~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 451 MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 7777522233333 3334457777776667777777777777
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.4e-11 Score=118.05 Aligned_cols=283 Identities=12% Similarity=0.066 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHh
Q 045105 246 SLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLS 325 (601)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 325 (601)
+..+|...|..+..+ +.-...+...+..+|...+++++|.++|+.+......
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------------- 385 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------------- 385 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Confidence 456677777773333 3334467778899999999999999999943221110
Q ss_pred CCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHH
Q 045105 326 LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDL---VSQN 402 (601)
Q Consensus 326 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 402 (601)
..-+..+|++.+-.+-+ +-++.++..-.-..-+-.+.+|.++.++|.-+++.+.|++.|++..+.|+ .+|+
T Consensus 386 --rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayT 459 (638)
T KOG1126|consen 386 --RVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYT 459 (638)
T ss_pred --cccchhHHHHHHHHHHh----hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhh
Confidence 01123345555443322 11222222222122355789999999999999999999999999986444 5777
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
.+..-+.....++.|...|+..+. +.|..+ .|-.+.-.|.+.++++.|+-.|+...+-+ +.+......+...+.+.
T Consensus 460 LlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 460 LLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQL 536 (638)
T ss_pred hcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHh
Confidence 777778888999999999998876 456554 67778889999999999999997755533 23345566677888899
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|+.++|+.+++++ ...| |+.+----...+...+++++|++.++++.+..|++..++..++.+|.+.|+.+.|+.-+-=
T Consensus 537 k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 9999999999998 3344 5555445556677789999999999999999999999999999999999999999999887
Q ss_pred HhhcCC
Q 045105 560 MKDRRM 565 (601)
Q Consensus 560 ~~~~~~ 565 (601)
+.+-++
T Consensus 617 A~~ldp 622 (638)
T KOG1126|consen 617 ALDLDP 622 (638)
T ss_pred HhcCCC
Confidence 777665
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=2.8e-13 Score=126.26 Aligned_cols=252 Identities=15% Similarity=0.084 Sum_probs=63.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 30 VTACAANGLVLEALECLERMSSLDN-ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
...+.+.|++++|++++...... . ++.+..-|..+.......++++.|.+.++++...+.. +...+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 44444555555555555332221 1 2223333333344444455555555555555443211 23334444443 3445
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHHHHHHHH
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS-----IKNEVSCNTIIVGYCENGNVAEARELF 183 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~ 183 (601)
++++|.++++...+. .++...+..++..+.+.++++++.++++... ..+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444332 1333444445555555555555555554432 123334445555555555555555555
Q ss_pred HHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCC
Q 045105 184 DQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQ 263 (601)
Q Consensus 184 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (601)
++..... +.|....+.++..+...|+.+++..++....... +.|...+..+..++...|+.++|...++...+.. +
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 5555442 1234444455555555555555555554444311 2333344444555555555555555555554432 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 264 SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.|+.+...+..++...|+.++|.++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp T-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 345555555555555666555555543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.8e-10 Score=111.83 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=51.2
Q ss_pred CChHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAPD-S--VMWGALLGGCVSHGNLEFGQIAAD--RLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
++.+.+.+.+++. ...|+ + ....++...|.+.|++++|.+.++ .+.+..| ++..+.+++.++.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555544 22342 3 455667777777777777777777 4555666 44456677777777788777777
Q ss_pred HHHHHh
Q 045105 556 TRQKMK 561 (601)
Q Consensus 556 ~l~~~~ 561 (601)
++++..
T Consensus 392 ~~~~~l 397 (409)
T TIGR00540 392 MRQDSL 397 (409)
T ss_pred HHHHHH
Confidence 777653
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2e-09 Score=101.42 Aligned_cols=266 Identities=11% Similarity=0.016 Sum_probs=199.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHh
Q 045105 263 QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSAC 342 (601)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 342 (601)
.-+..+...-.+-+...+++.+..++++ .+.+ ..++....+..-|.++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~----------~lle----------------------~dpfh~~~~~~~ia~l 288 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITE----------ELLE----------------------KDPFHLPCLPLHIACL 288 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhH----------HHHh----------------------hCCCCcchHHHHHHHH
Confidence 3455555566666777888888887777 3331 1123333444455677
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChhhHHH
Q 045105 343 SSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD---LVSQNAMLTAYAMHGHGKEGIA 419 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~ 419 (601)
...|+..+-..+-..+++.- +..+.+|-++...|...|+..+|++.|.+...-| ...|-.+..+|+-.|..++|+.
T Consensus 289 ~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAma 367 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMA 367 (611)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHH
Confidence 77777776666666666643 4567888899999999999999999999877433 3578899999999999999999
Q ss_pred HHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC----
Q 045105 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP---- 495 (601)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 495 (601)
.+...-+. ++-....+..+.--|.+.+..+.|.++|...... .+-|+...+-+.-.....+.+.+|..+|+..-
T Consensus 368 aY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 368 AYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 99887664 2222223344455578889999999999653322 24456677888777888999999999997661
Q ss_pred -CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 496 -MAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 496 -~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.+ =.++++.|..+|++.+.+++|+..+++++.+.|.++.++..++-+|...|+++.|.+.+.+..-.
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 111 24568889999999999999999999999999999999999999999999999999998876543
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3e-10 Score=99.37 Aligned_cols=179 Identities=9% Similarity=0.078 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
..+...+....+.+.|..++.+..+. .|+.+ .-..+.+.....|+++.|.+.|+.+.+.+...-..+...|..+|..
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 33445555567788888888888775 44443 3334556777888888888888777777655556777888888888
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH---HcCCHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA---YAGRWSDLART 556 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~ 556 (601)
.|+.++....+.++ ...++...-..+...-....-.+.|...+.+-....| +...+..|+..-. ..|++.+....
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHH
Confidence 88888888888776 3345555444444444444446677777777777788 5555566665443 45778999999
Q ss_pred HHHHhhcCCccCCCcceEEeCCceeee
Q 045105 557 RQKMKDRRMHKSPGCSWIEDRDEIHKF 583 (601)
Q Consensus 557 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (601)
++.|....++..|...+-.+...++.+
T Consensus 341 lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 341 LRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHHHHHHHHhhcCCceecccCCcceee
Confidence 999999988888887666666665555
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.2e-09 Score=98.73 Aligned_cols=289 Identities=12% Similarity=0.059 Sum_probs=163.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHH
Q 045105 173 NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKE 252 (601)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 252 (601)
.|++..|+++..+-.+.+ .-....|..-.++.-..|+.+.+-.++.+..+ ..-.++...+-+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 466666666666655544 22233344445555666777777777766554 2223333444444455666677777776
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCH
Q 045105 253 IHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDI 332 (601)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 332 (601)
-+..+.+.+ +-++.+......+|.+.|++.....++. .+.+.|.-.+...-
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~----------~L~ka~~l~~~e~~------------------ 225 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILP----------KLRKAGLLSDEEAA------------------ 225 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHH----------HHHHccCCChHHHH------------------
Confidence 666666655 3345566667777777777777776666 55544433322110
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYA 409 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~ 409 (601)
+ ....++..+++-....+..+.-...|+..+ +.++..-.+++.-+.
T Consensus 226 --------------------~-----------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li 274 (400)
T COG3071 226 --------------------R-----------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI 274 (400)
T ss_pred --------------------H-----------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH
Confidence 0 011223333333333333333444555544 344555555666667
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAY 488 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 488 (601)
+.|+.++|.++..+..+++..|+. ...-.+.+.++.+.-++.. ......+..| ..+.+|...|.+.+.|.+|.
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHH
Confidence 777777777777777777666651 1222345566666666655 3333333333 45666666677777777777
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 489 EFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 489 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+.|+.. ...|+..+|.-+..++.+.|+.++|.+..++..-+
T Consensus 349 ~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 349 EALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777655 45666777777777777777777777666666543
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.3e-09 Score=97.50 Aligned_cols=360 Identities=11% Similarity=0.079 Sum_probs=245.6
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHH--H
Q 045105 159 NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFG--S 236 (601)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~ 236 (601)
|...+-.....+.+.|....|.+.|......- +-...+|..|.... -+.+.+. .+ . .+...|...+. .
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~-~l---~--~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS-IL---V--VGLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH-HH---H--hcCcccchHHHHHH
Confidence 44444445555667888888888888776432 22333444443332 2222221 11 1 22222222221 2
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
+..++-...+.+++.+-.......|++.+...-+....+.-...++++|+.+|+ ++.++ |+.-.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Fe----------ei~kn----DPYRl-- 296 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFE----------EIRKN----DPYRL-- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHH----------HHHhc----CCCcc--
Confidence 234455556778888888888888888888777777777888899999999999 55522 22211
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCC
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTP 396 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 396 (601)
-|..+|+.++-.-.... .+.++..-...--+--+.|...+.+.|.-.++.++|...|++..+.
T Consensus 297 -------------~dmdlySN~LYv~~~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL 359 (559)
T KOG1155|consen 297 -------------DDMDLYSNVLYVKNDKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL 359 (559)
T ss_pred -------------hhHHHHhHHHHHHhhhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc
Confidence 23344554443222111 1111211111111233456667788888899999999999988853
Q ss_pred C---hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHH
Q 045105 397 D---LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC 473 (601)
Q Consensus 397 ~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (601)
| ...|+.+..-|....+...|++-+++.++-. +-|-..|-.|.++|.-.+.+.=|+-+|+...... +-|...|.+
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~a 437 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVA 437 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHH
Confidence 3 4578888899999999999999999999853 4466799999999999999999999997755543 456789999
Q ss_pred HHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCCchHHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKIP--MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL-------EPNNTGNYVMLANLF 544 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~ 544 (601)
|.++|.+.++.++|++-|++.- -..+...+..|...|-+.++.++|...+++.++. +|....+..-|+.-+
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 9999999999999999999872 2446688999999999999999999999998883 343444555577788
Q ss_pred HHcCCHHHHHHHHHHHhhc
Q 045105 545 AYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 545 ~~~g~~~~A~~~l~~~~~~ 563 (601)
.+.+++++|........+-
T Consensus 518 ~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HhhcchHHHHHHHHHHhcC
Confidence 8899999988876555443
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4e-09 Score=96.99 Aligned_cols=230 Identities=16% Similarity=0.149 Sum_probs=181.0
Q ss_pred CCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCC--CCchhHHhHHHHHHHhcCChHH---HHHHHhcCCCCChhhH
Q 045105 327 DLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGY--DSDVHIGTALVDMYAKCGSLKH---ARLAYKRISTPDLVSQ 401 (601)
Q Consensus 327 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~ 401 (601)
|..-+...-+....+.-...+++.|..+|+++.+... --|..+|..++ |.+..+-.- |..+ -.+.+--+.|.
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v-~~idKyR~ETC 333 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNV-SNIDKYRPETC 333 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHH-HHhccCCccce
Confidence 4444444445555566678899999999999998743 12566776665 333332221 2222 22334445666
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
.++.+-|+-.++.++|...|++.++. .|.. ..|+.+.+=|....+...|.+-++...+-. +.|-..|-.|..+|.-
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI 410 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence 67778888899999999999999984 5655 467777788999999999999997766643 5577799999999999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
.+...-|+-+|+++ ..+| |+..|.+|...|.+.++.++|+..++++.....-+..++..|+.+|.+.++.++|.+.++
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998 5567 899999999999999999999999999999976677899999999999999999999988
Q ss_pred HHhh
Q 045105 559 KMKD 562 (601)
Q Consensus 559 ~~~~ 562 (601)
+..+
T Consensus 491 k~v~ 494 (559)
T KOG1155|consen 491 KYVE 494 (559)
T ss_pred HHHH
Confidence 7765
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=8.4e-11 Score=107.07 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=163.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (601)
....+..+...+...|++++|...+++.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45667778888999999999999998765 3445677888889999999999999999998864 4455677788888
Q ss_pred HhccCchHHHHHHHHHHHhcCC-CcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHH
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDV-KPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFG 519 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 519 (601)
+...|++++|...++....... +.....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999966655432 223456777888999999999999999887 3344 466788888899999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 520 QIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.+.++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888888889999999999999999998887654
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2.2e-09 Score=97.13 Aligned_cols=276 Identities=12% Similarity=0.034 Sum_probs=224.1
Q ss_pred CCCchhHHHHHhhCCCCCc---cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPERDC---VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
.|+|.+|+++..+..+... ..|..-..+..+.|+.+.+-..+.+..+. ...++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 5999999999998876433 34554556677789999999999999885 4567778888889999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch-------HHHHHHHHHHHhcCCHHHHHHHHhh
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP-------FVVNGLVDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 154 (601)
+.++.+.+ +-+........++|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998875 445667888899999999999999999999999976654 3566666666566666666667777
Q ss_pred cCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh
Q 045105 155 FSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS 231 (601)
Q Consensus 155 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 231 (601)
.+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|. -...-.+.+-+++..-++..++-....+..|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 763 3677788899999999999999999999998876666 2223345677888888888887776566655
Q ss_pred hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 232 FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
..+.++-..|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+...|.++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 6777788889999999999999996655 47899999999999999999999998888
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.3e-09 Score=99.12 Aligned_cols=194 Identities=9% Similarity=0.005 Sum_probs=148.4
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHc
Q 045105 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMH 411 (601)
Q Consensus 335 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~ 411 (601)
|.-+...|....+.++....|+...+.+.. ++.+|.--..++.-.+++++|..=|++... .+...|-.+.-+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 666677788889999999999988877643 556666666677778899999999998874 3445666666666788
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-------CcCchHHHHHHHHhhhcCCh
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV-------KPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~ 484 (601)
++++++...|++.+++ ++--+..|+.....+...+++++|.+.|+...+.-. .+.+.+...++-.= -.+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 9999999999999987 455567899999999999999999999966554321 11222223333222 34899
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
..|++++.+. .+.| ....+.+|...-...|+.++|++++++...+..
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999988 5556 466788888889999999999999999988754
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=3.7e-07 Score=87.79 Aligned_cols=214 Identities=17% Similarity=0.136 Sum_probs=122.9
Q ss_pred hHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC----CCh-hhHHHHHHH
Q 045105 333 YTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST----PDL-VSQNAMLTA 407 (601)
Q Consensus 333 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~ll~~ 407 (601)
..|+..+..--..|-++....+++.+++..+. ++.+.......+..+.-++++.+++++-.. |++ ..|+..+.-
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34555555556667888889999999987764 333333344445566778999999998762 444 478887777
Q ss_pred HHHc---CChhhHHHHHHHHHHCCCCccHHhHHHHHHH--HhccCchHHHHHHHHHHHhcCCCcC--chHHHHHHHHhhh
Q 045105 408 YAMH---GHGKEGIAHFRRILASGFRPDHISFLSALSA--CVHAGSIKTGSEFFDLMAYYDVKPS--LKHYTCMVDLLSR 480 (601)
Q Consensus 408 ~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 480 (601)
+.+. -..+.|..+|++.++ |.+|...-+..|+-+ =.+.|....|+.+++.. ..++++. ...||..|.-...
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera-t~~v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA-TSAVKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH
Confidence 6653 357899999999999 677766533223222 23567778888888663 3344443 2356655543222
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcC-CC-CCchHHHHHHHHHHcCC
Q 045105 481 AGELGEAYEFIKKI-PMAPDSVMW---GALLGGCVSHGNLEFGQIAADRLIELE-PN-NTGNYVMLANLFAYAGR 549 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~ 549 (601)
.=-......++++. ..-|+...- -.+...-.+.|.+++|..++.-..+.- |. ++.-+..+=..-.+-|+
T Consensus 635 ~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 11112223333332 112332211 112222345567777777776666653 32 33445555555556666
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.8e-08 Score=88.29 Aligned_cols=454 Identities=11% Similarity=0.048 Sum_probs=279.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCH
Q 045105 66 IGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDM 145 (601)
Q Consensus 66 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 145 (601)
+.-+....++..|+.+++.-...+-.-...+-..+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55667788999999998876644322222333334456678899999999999888754 66677777777777788999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045105 146 LSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD 225 (601)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 225 (601)
.+|..+-.... ++...-..+.+...+.++-++-..+-..+...- ..--+|.....-.-.+++|++++...+.
T Consensus 108 ~eA~~~~~ka~-k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~-- 179 (557)
T KOG3785|consen 108 IEAKSIAEKAP-KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQ-- 179 (557)
T ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99998877654 344445566666777788777776666654321 1112233333334468999999999887
Q ss_pred CCCCChhhHHHHHH-HhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 226 GIEPTSFTFGSVLI-ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR--YQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 226 ~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
-.|+-...+.-+. +|.+..-++-+.++++--.+. ++.++...|.......+ .|+..++ -.. .+
T Consensus 180 -dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~--E~k----------~l 245 (557)
T KOG3785|consen 180 -DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED--EKK----------EL 245 (557)
T ss_pred -cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH--HHH----------HH
Confidence 2345445554443 455666677777777666554 23344444544443333 2332222 111 11
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
.+.+-. .| ...+.+.. .-+.--.+-+.|++++--+.+. .|. .--.|+-.|.+.++
T Consensus 246 adN~~~----~~---~f~~~l~r--------------HNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 246 ADNIDQ----EY---PFIEYLCR--------------HNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQND 300 (557)
T ss_pred Hhcccc----cc---hhHHHHHH--------------cCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeeccccc
Confidence 100000 00 00000000 0111223456677777655543 222 23356677899999
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCC-------hhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHH
Q 045105 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGH-------GKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 454 (601)
+.+|..+.+.+.+.++.-|-.-...++..|+ ..-|.+.|+-.-+++..-|.. --.++.+++.-..++++.+.
T Consensus 301 VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 301 VQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999987666655443344444443 344555555554555444443 34445556666678899999
Q ss_pred HHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCC
Q 045105 455 FFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MA-PDSVMWGALLGG-CVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p 531 (601)
++..+...=...|...+| +..+++..|.+.+|+++|-++. -+ .|..+|.+++.- |.+.+.++.|.+++-+.. .|
T Consensus 381 YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~ 457 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TP 457 (557)
T ss_pred HHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--Cc
Confidence 888877665555555554 7899999999999999998884 12 466777765554 567888887776653321 23
Q ss_pred CCC-chHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCC
Q 045105 532 NNT-GNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 532 ~~~-~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 570 (601)
.+. ..+..+++.|.+.+.+==|-+.|+.+...++.|..+
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 333 344567778889999988999999998888766544
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3e-09 Score=93.24 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=122.2
Q ss_pred cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHhcCC
Q 045105 36 NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA------RTLSSVLPACARLQK 109 (601)
Q Consensus 36 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~ 109 (601)
+++.++|+++|-+|.+ ..+.+..+.-+|...|.+.|..+.|+++.+.+.++ ||. ...-.|.+-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777766 44455556666666777777777777777766653 222 123334444556666
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch--------hHHHHHHHHHhcCCHHHHHH
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV--------SCNTIIVGYCENGNVAEARE 181 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~a~~ 181 (601)
++.|+.+|..+...| ..-......|+..|-...+|++|+++-+++..-+.. .|.-+...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 677777776666544 233445556666666666666666665544422211 24444444455566666666
Q ss_pred HHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 045105 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL 260 (601)
Q Consensus 182 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (601)
++....+.+ +..+..-..+.+.+...|++..|++.++.+.+ .+..--..+...+..+|...|+.++....+..+.+.
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 666665543 23334444455566666666666666666554 333233344455555555666666555555555544
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5e-12 Score=82.04 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=44.6
Q ss_pred CChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 045105 57 PNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACAR 106 (601)
Q Consensus 57 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (601)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988864
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.7e-07 Score=89.30 Aligned_cols=456 Identities=14% Similarity=0.063 Sum_probs=243.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH--Hhc
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC--ARL 107 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~ 107 (601)
++.+...|++++|......+.. ..+-+...+..=+-++.+.+.+++|+.+.+.-... ..+..-+ +=++| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHc
Confidence 4556677888888888888887 45666777777788888888888888665543321 1111111 22344 356
Q ss_pred CCcchHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045105 108 QKLSLGKEFHGYITRNGFMSN-PFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQM 186 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 186 (601)
+..++|...++ |..++ ..+...-...+.+.|++++|..+|+.+...+...+..-+.+-+..--.....+ .+
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LL 164 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HH
Confidence 77888777776 33333 33666666777888888888888888865555544443332111100000011 12
Q ss_pred HhcCCCCCeeehHHHH---HHHHhCCChhHHHHHHHHHHHc------CC------CCCChhh-HHHHHHHhcccCCHHHH
Q 045105 187 EHLGVQRGIISWNSMI---SGYVDNSLYDEAFSMFRDLLMR------DG------IEPTSFT-FGSVLIACADMNSLRKG 250 (601)
Q Consensus 187 ~~~g~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~------~~------~~p~~~~-~~~ll~~~~~~~~~~~a 250 (601)
......| ..+|..+. ..+...|+|.+|+++++...+. .+ +.-+..+ -..+.-++-..|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2222122 34555444 3456678888888888776320 00 0000000 11122223345566666
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC
Q 045105 251 KEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP 330 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 330 (601)
.+++..+.+.... |........+-+. .+.. ..--+
T Consensus 244 ~~iy~~~i~~~~~-D~~~~Av~~NNLv-----------------------a~~~---------------------d~~~~ 278 (652)
T KOG2376|consen 244 SSIYVDIIKRNPA-DEPSLAVAVNNLV-----------------------ALSK---------------------DQNYF 278 (652)
T ss_pred HHHHHHHHHhcCC-CchHHHHHhcchh-----------------------hhcc---------------------ccccC
Confidence 6666555555422 2211111110000 0000 00000
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCC-hhhHHHHHHH-H
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD-LVSQNAMLTA-Y 408 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ll~~-~ 408 (601)
|. ......-.......+..+.-+..-.. -....-+.++..| .+..+.+.++....+... ...+.+++.. +
T Consensus 279 d~--~~l~~k~~~~~~l~~~~l~~Ls~~qk----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t 350 (652)
T KOG2376|consen 279 DG--DLLKSKKSQVFKLAEFLLSKLSKKQK----QAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEAT 350 (652)
T ss_pred ch--HHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHH
Confidence 10 00000000000011111111111111 1111123344444 355666777766666322 2334444433 3
Q ss_pred HH-cCChhhHHHHHHHHHHCCCCccH--HhHHHHHHHHhccCchHHHHHHHH--------HHHhcCCCcCchHHHHHHHH
Q 045105 409 AM-HGHGKEGIAHFRRILASGFRPDH--ISFLSALSACVHAGSIKTGSEFFD--------LMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 409 ~~-~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~ 477 (601)
.. ...+..+..++...-+. .|.. ......+......|+++.|.+++. .+.+.+..| .+..++...
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l 426 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVAL 426 (652)
T ss_pred HHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHH
Confidence 22 23477888888877765 3443 455566677788999999999997 444444444 455667788
Q ss_pred hhhcCChHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 478 LSRAGELGEAYEFIKKI-----PMAPDSV----MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-----~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
+.+.++.+-|..++.+. ...+... ++.-+...-.++|+.++|...++++.+.+|++..+...++.+|++.
T Consensus 427 ~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~- 505 (652)
T KOG2376|consen 427 YYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL- 505 (652)
T ss_pred HHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-
Confidence 88888877777776655 1122223 3333444445779999999999999999999999999999998764
Q ss_pred CHHHHHHHHH
Q 045105 549 RWSDLARTRQ 558 (601)
Q Consensus 549 ~~~~A~~~l~ 558 (601)
+.+.|..+-+
T Consensus 506 d~eka~~l~k 515 (652)
T KOG2376|consen 506 DPEKAESLSK 515 (652)
T ss_pred CHHHHHHHhh
Confidence 4566665533
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=9.1e-12 Score=80.80 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=44.3
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999999999999999999988874
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=2e-09 Score=104.61 Aligned_cols=231 Identities=18% Similarity=0.202 Sum_probs=173.7
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-----CC-CCchh-HHhHHHHHHHhcCChHHHHHHHhcCCC--------
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRC-----GY-DSDVH-IGTALVDMYAKCGSLKHARLAYKRIST-------- 395 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-------- 395 (601)
-..++..+...|...|+++.|...++...+. |. .|... ..+.+...|...+++.+|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777899999999999999999987765 21 22222 233467788999999999999988761
Q ss_pred --C-ChhhHHHHHHHHHHcCChhhHHHHHHHHHHC-----CC-CccHH-hHHHHHHHHhccCchHHHHHHHHHHHh-c--
Q 045105 396 --P-DLVSQNAMLTAYAMHGHGKEGIAHFRRILAS-----GF-RPDHI-SFLSALSACVHAGSIKTGSEFFDLMAY-Y-- 462 (601)
Q Consensus 396 --~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-- 462 (601)
| -..+++.|...|.+.|++++|..++++..+- |. .|... .++.+...|+..+++++|..++....+ .
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2 2246788888999999999999888876541 21 23332 466777788999999999999843322 1
Q ss_pred CCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 463 DVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 463 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
-+.++ ..+++.|...|.+.|++++|.++++++ + ..+ ....++.+...|.+.+++++|.+++.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 23333 347889999999999999999999877 1 122 245677888899999999999999988776
Q ss_pred c----CCCC---CchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 529 L----EPNN---TGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 529 ~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
. .|++ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 4544 4688899999999999999999977664
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.1e-06 Score=86.84 Aligned_cols=143 Identities=15% Similarity=0.246 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
+..|+.+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.+++-.+++.+.++..-.|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 34566677777777777666655432 2345678888899999999999998888877776667655 568889
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 478 LSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
|++.++..+.++++. -||..-...+..-|...|.++.|.-++.. ..-|..|+..+...|.++.|...-
T Consensus 1176 yAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888776653 46777777778888888888777776643 334566777777777777776654
Q ss_pred HHH
Q 045105 558 QKM 560 (601)
Q Consensus 558 ~~~ 560 (601)
++.
T Consensus 1244 RKA 1246 (1666)
T KOG0985|consen 1244 RKA 1246 (1666)
T ss_pred hhc
Confidence 443
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.7e-08 Score=93.16 Aligned_cols=478 Identities=10% Similarity=-0.010 Sum_probs=272.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
-+..+.+-+..+.++..|.-+-++..... -|+..--.+.+++.-.|++++|..++..-.-. ..|..+.......+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 34455555555666666766666665432 33333344567777777777777766655332 34556666666677
Q ss_pred HhcCCcchHHHHHH----HHHHh-------c--CCCch-----------HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 045105 105 ARLQKLSLGKEFHG----YITRN-------G--FMSNP-----------FVVNGLVDVYRRCGDMLSALKIFSKFSIKNE 160 (601)
Q Consensus 105 ~~~~~~~~a~~~~~----~~~~~-------g--~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 160 (601)
.+..++++|..++. .+..- + +.+|. ..+-.-...|......++|...+.+....|.
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~ 172 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA 172 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch
Confidence 77777777777665 11100 0 00110 0111111233334455666666665555554
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCCCChhhHHH
Q 045105 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS----LYDEAFSMFRDLLMRDGIEPTSFTFGS 236 (601)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 236 (601)
..|..+...-... .-.+.+-|+.+..........-....+..+.+.. .-+.....-.+.. ..+..-+......
T Consensus 173 ~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s-l~~l~~~~dll~~ 249 (611)
T KOG1173|consen 173 KCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES-LIGLAENLDLLAE 249 (611)
T ss_pred hhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh-hhhhhhcHHHHHH
Confidence 4444333221111 0011111111111000000000001111111100 0000000000000 0223334444444
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
-..-|...+++.++.++.+.+.+.. ++....+..-|.++...|+..+-..+-. ++.+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh----------~LV~------------ 306 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSH----------KLVD------------ 306 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHH----------HHHH------------
Confidence 4555667788889999888887764 4555555556667777776544332222 2221
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST- 395 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 395 (601)
..+..+.+|-++.--|...|+..+|++++.+....... -...|-.+...|+-.|..+.|...+....+
T Consensus 307 ----------~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 307 ----------LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred ----------hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 12334556666776777779999999999876644322 234567778888888888888877765442
Q ss_pred --CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc--CCCc----C
Q 045105 396 --PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY--DVKP----S 467 (601)
Q Consensus 396 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~ 467 (601)
....-+--+..-|.+.++..-|.+.|.+..... +-|+..++-+.-..-..+.+.+|..+|+..... .+.+ -
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 111122224445778899999999999988742 344556666666666778899999999554421 1111 2
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
..+++.|..+|.+.+++++|+..+++. ...| +..++.++.-.|...|+++.|.+.+.++..+.|++..+-..|..+..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345788889999999999999999987 3344 78889999999999999999999999999999987666666655443
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=4e-10 Score=98.61 Aligned_cols=227 Identities=10% Similarity=0.013 Sum_probs=190.6
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChhh-HHHHHHHHHHc
Q 045105 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PDLVS-QNAMLTAYAMH 411 (601)
Q Consensus 335 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~ll~~~~~~ 411 (601)
-..+.++|.+.|-+.+|...+....+.. |-+.+|..|-..|.+..++..|..+|.+-.. |..+| ...+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 3567889999999999999998877654 5666777889999999999999999988762 44444 45567778888
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFI 491 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (601)
++.++|+++|+...+.. +.+.....++...|.-.++++.|+.+|+.+.+.|+. ++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999863 445557777778888899999999999999999964 5677888888888999999999888
Q ss_pred HhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 492 KKIP---MAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 492 ~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
++.- ..|+ ..+|-.+.....-.||+..|.+.++.+...+|++.+.++.|+-+-.+.|++++|+.+++...+..+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 8761 1343 457888888888899999999999999999999999999999999999999999999998876653
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=3.7e-06 Score=81.37 Aligned_cols=421 Identities=12% Similarity=0.076 Sum_probs=212.5
Q ss_pred CCchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHH
Q 045105 6 GSLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGML 82 (601)
Q Consensus 6 g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 82 (601)
|+-++|.+....... .+.++|+.+.-.+....++++|+..|..... ..+.|...|.-+.-.-++.|+++...+..
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 555555555555543 2334555554444445566666666666555 44455555555544445555555555555
Q ss_pred HHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhc-CCCchHHHHHHH------HHHHhcCCHHHHHHHHhh
Q 045105 83 FRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNG-FMSNPFVVNGLV------DVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 83 ~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~ 154 (601)
..+.+. .|+ ...|..+..+..-.|+...|..++++..+.. -.|+...+.... ....+.|..+.|.+.+..
T Consensus 133 ~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 133 NQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 555543 232 2345555555555666666666666666544 234444333222 223445666666665554
Q ss_pred cCCC--Cchh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHH-HHHhCCChhHHH-HHHHHHHHcCCCCC
Q 045105 155 FSIK--NEVS-CNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS-GYVDNSLYDEAF-SMFRDLLMRDGIEP 229 (601)
Q Consensus 155 ~~~~--~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~~~~~~a~-~~~~~~~~~~~~~p 229 (601)
.... |-.. -.+-...+.+.+++++|..++..++.. .||...|+.... ++.+-.+.-+++ .+|..... ..|
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~---~y~ 285 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE---KYP 285 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---cCc
Confidence 4422 2222 223344556667777777777776655 355444444433 332222222333 34433221 111
Q ss_pred Chhh-HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCC
Q 045105 230 TSFT-FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFE 308 (601)
Q Consensus 230 ~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~ 308 (601)
.... -..-++......-.+...+++....+.|+++ ++..+...|-.-. .+- +++++ +......+...|..
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~---k~~-~le~L--vt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPE---KVA-FLEKL--VTSYQHSLSGTGMF 356 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchh---HhH-HHHHH--HHHHHhhcccccCC
Confidence 1111 1111111222222333444555555555543 2222222222111 111 22210 00111111111110
Q ss_pred CChhhhhHHHHHHHHHhCCCCCCHh--HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCc-hhHHhHHHHHHHhcCChHH
Q 045105 309 PNVYTWNAMQLFSEMLSLDLTPDIY--TVGIILSACSSLATMERGKQVHAYAIRCGYDSD-VHIGTALVDMYAKCGSLKH 385 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 385 (601)
+-... ...-+|+.. |+-.++..+.+.|+++.|..+++..+.+- |+ +..|..-...+...|.+++
T Consensus 357 ~~~D~-----------~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 357 NFLDD-----------GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred Ccccc-----------cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHH
Confidence 00000 001244443 45567788899999999999999888653 33 4455555677888999999
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHh--------HHHH--HHHHhccCchHHH
Q 045105 386 ARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHIS--------FLSA--LSACVHAGSIKTG 452 (601)
Q Consensus 386 a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------~~~l--~~~~~~~g~~~~a 452 (601)
|..++++..+ +|...-.--..-..+.++.++|..+.....+.|. +... |-.+ ..+|.+.|++..|
T Consensus 424 Aa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~A 501 (700)
T KOG1156|consen 424 AAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLA 501 (700)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHH
Confidence 9999998874 4443333455556778999999999888888774 3222 2222 3466777777777
Q ss_pred HHHHHHH
Q 045105 453 SEFFDLM 459 (601)
Q Consensus 453 ~~~~~~~ 459 (601)
++-|..+
T Consensus 502 LKkfh~i 508 (700)
T KOG1156|consen 502 LKKFHEI 508 (700)
T ss_pred HHHHhhH
Confidence 6655443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=3.8e-07 Score=87.90 Aligned_cols=441 Identities=14% Similarity=0.041 Sum_probs=249.6
Q ss_pred CchhHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 7 SLDDAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 7 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
.+.+.++..+.+.+. +..+.....-.+...|+.++|.+....-.. +...+.+.|+.+.-.+....++++|+++|.
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 344444455555432 334444444456667888888888887666 666777888888888888888888888888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C
Q 045105 84 RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI-----K 158 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~ 158 (601)
.....+ +-|...+.-+.-.-++.|+++........+.+.. +.....|..++.++.-.|+...|..++++... +
T Consensus 100 nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 100 NALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 887653 3344556555555566777777777777766642 33445677777777778888888877766652 3
Q ss_pred CchhHHH------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeeh-HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh
Q 045105 159 NEVSCNT------IIVGYCENGNVAEARELFDQMEHLGVQRGIISW-NSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS 231 (601)
Q Consensus 159 ~~~~~~~------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 231 (601)
+...|.. -.....+.|..+.|++.+..-... ..|-..+ ..-...+.+.+++++|..++..+.. ..||.
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~---rnPdn 252 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE---RNPDN 252 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh---hCchh
Confidence 3333322 223455667777776666554322 1111111 1223455677777788877777765 44666
Q ss_pred hhHHHHHHHhc--ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCC
Q 045105 232 FTFGSVLIACA--DMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP 309 (601)
Q Consensus 232 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~ 309 (601)
.-|...+..+. -.+..+....+|....+.-........ +--......++....
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R--lplsvl~~eel~~~v----------------------- 307 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR--LPLSVLNGEELKEIV----------------------- 307 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh--ccHHHhCcchhHHHH-----------------------
Confidence 65555444333 122222222333333322110000000 000000000111100
Q ss_pred ChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHH----h----------CCCCchhHHh--HH
Q 045105 310 NVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR----C----------GYDSDVHIGT--AL 373 (601)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~----------~~~~~~~~~~--~l 373 (601)
-..+..+.+.|+++--..+.++ +-.....+-..++...+.. . --+|++..|+ .+
T Consensus 308 -------dkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 308 -------DKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred -------HHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 1222333333443322222222 1111111111111111111 0 0145555554 46
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 374 VDMYAKCGSLKHARLAYKRISTPDLV---SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
+..|-+.|+++.|..+++.....++. .|-.=.+.+...|+.++|..++++..+.. .||...=.--..-..++...+
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 77788999999999999998853333 34444577899999999999999999875 666665445666777899999
Q ss_pred HHHHHHHHHHhcCCCcCch--------HHHHH--HHHhhhcCChHHHHHHHHhC
Q 045105 451 TGSEFFDLMAYYDVKPSLK--------HYTCM--VDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~ 494 (601)
+|.++.....+.|. +.. +|-.+ .++|.+.|++.+|++-|..+
T Consensus 457 eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 99999987777775 221 22222 34577888888887766554
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.7e-07 Score=85.26 Aligned_cols=259 Identities=12% Similarity=0.052 Sum_probs=152.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC----------
Q 045105 261 GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP---------- 330 (601)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p---------- 330 (601)
-++.|......+..++...|+.++|...|+ ... ..|..+..+++++.-+......-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe----------~~~----~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFS----------STL----CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHH----------HHh----hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 356667777778888888888888887777 444 44445555555554443322110
Q ss_pred ------CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhH
Q 045105 331 ------DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQ 401 (601)
Q Consensus 331 ------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 401 (601)
+...|-.-.......++++.|+.+-++.++.... +...+-.-...+...|++++|.-.|.... +-+..+|
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIY 371 (564)
T ss_pred HhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHH
Confidence 0111111112223345666666666665554322 23333333345666777777777776554 3456777
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHH-HHHh-ccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL-SACV-HAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLL 478 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 478 (601)
..|+.+|...|++.+|..+-++..+. ++.+..+...+. ..|. ...--++|.++++.- ..+.|+ ....+.+.+.+
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~--L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS--LKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh--hccCCccHHHHHHHHHHH
Confidence 77888888777777777776665553 344445555442 2222 233345666666542 223454 23455666777
Q ss_pred hhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 479 SRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
...|+.++++.++++. ...||....+.|...++..+.+.+|.+.|..+...+|++..+.
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 7777777887777766 4457777777777777777777778887777777777654443
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=5.8e-09 Score=94.87 Aligned_cols=194 Identities=11% Similarity=0.029 Sum_probs=93.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR 140 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 140 (601)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444443321 1122333334444444444444444444444432 222333444444444
Q ss_pred hcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 141 RCGDMLSALKIFSKFSIK-----NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
..|++++|.+.+++.... ....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 445555555544444311 12234444555555666666666666655443 223345555666666666666666
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
..+++.... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666542 223344444555555566666666666555543
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.18 E-value=2.6e-07 Score=90.00 Aligned_cols=210 Identities=15% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHH
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGI 418 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 418 (601)
|..|.+.|+|+.|.++-.+. .|....+..|.+-..-+-++|++.+|.+++-.+..|+. .|..|-++|..+..+
T Consensus 798 i~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMI 870 (1636)
T ss_pred HHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHH
Confidence 34444444444444433221 12233344444444555566777777777766666654 356677777777776
Q ss_pred HHHHHHHHCCCCccH--HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 045105 419 AHFRRILASGFRPDH--ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPM 496 (601)
Q Consensus 419 ~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 496 (601)
++.++- .|+. .|...+..-+...|++..|..-|-... -|.+-+++|-..+.|++|.++-+.-+
T Consensus 871 rlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakteg- 935 (1636)
T KOG3616|consen 871 RLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEG- 935 (1636)
T ss_pred HHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccc-
Confidence 666543 2332 345555566666777777766653322 24455566666666666666655442
Q ss_pred CCCHHHHHHHHHH------------------------HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 497 APDSVMWGALLGG------------------------CVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 497 ~~~~~~~~~l~~~------------------------~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
-.|..-...++++ .+..+.++-|.++-+...+ ...+.....++..+...|++++
T Consensus 936 g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~ed 1013 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFED 1013 (1636)
T ss_pred cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhh
Confidence 1121111111211 1222333333333222222 2256677788888888999999
Q ss_pred HHHHHHHHhhcCCccCCCcc
Q 045105 553 LARTRQKMKDRRMHKSPGCS 572 (601)
Q Consensus 553 A~~~l~~~~~~~~~~~~~~~ 572 (601)
|-+.+-+..+..--....|.
T Consensus 1014 askhyveaiklntynitwcq 1033 (1636)
T KOG3616|consen 1014 ASKHYVEAIKLNTYNITWCQ 1033 (1636)
T ss_pred hhHhhHHHhhcccccchhhh
Confidence 98776665554433333443
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=4e-07 Score=90.02 Aligned_cols=251 Identities=13% Similarity=0.055 Sum_probs=152.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-hc-
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA-RL- 107 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~- 107 (601)
...+...|++++|++.++.-.. ...............+.+.|+.++|..+|..+..+ .|+...|...+..+. ..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc
Confidence 3456677888888888877544 33344455566777777888888888888888776 455555555444443 11
Q ss_pred ----CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH-HHHHHHhhcCCCCc-hhHHHHHHHHHhcCCHHHHHH
Q 045105 108 ----QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML-SALKIFSKFSIKNE-VSCNTIIVGYCENGNVAEARE 181 (601)
Q Consensus 108 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 181 (601)
.+.+....+++++...- |.......+.-.+....++. .+..++..+..+.+ .+|+.+-..|......+-..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 23455566666665442 22222211111111111121 22233333333333 345555555554444444444
Q ss_pred HHHHHHhc----CC----------CCCe--eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhccc
Q 045105 182 LFDQMEHL----GV----------QRGI--ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADM 244 (601)
Q Consensus 182 ~~~~m~~~----g~----------~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 244 (601)
++...... +- +|+. .++.-+...|-..|++++|++.+++.+. ..|+ +..|..-.+.+...
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHC
Confidence 54444321 11 2333 2445567778889999999999998876 3455 45666777788899
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 245 NSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
|++++|.+.++...... ..|..+-+..+..+.++|+.++|.+++.
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999988776 4567777788888899999999988887
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=3.3e-07 Score=90.13 Aligned_cols=127 Identities=19% Similarity=0.128 Sum_probs=100.7
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 045105 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH 513 (601)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 513 (601)
|......+.+.+..++|...+.+.... .+.....|......+...|.+++|.+.|... -+.| ++.+..++...+...
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 444556677778888887666543332 3444556666667788889999999888766 5677 567888899999999
Q ss_pred CChhHHHH--HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 514 GNLEFGQI--AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 514 g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
|+...|.. ++..+.+.+|.++.+|..++.++.+.|+.++|.+-|....+-
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99888888 999999999999999999999999999999999999877543
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=7e-09 Score=86.84 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 478 (601)
....|..+|...|++..|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+.. +-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455777899999999999999999986 5655 588888899999999999999996655543 34566888888899
Q ss_pred hhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 479 SRAGELGEAYEFIKKIPMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
|..|++++|...|++.-..|. ..+|..+.....+.|+.+.|.+.+++..+.+|+.+.....++......|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998843443 4567777777778899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 045105 555 RTRQKMKDRRM 565 (601)
Q Consensus 555 ~~l~~~~~~~~ 565 (601)
.++++...++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999888776
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=6.8e-09 Score=106.11 Aligned_cols=262 Identities=10% Similarity=-0.035 Sum_probs=173.2
Q ss_pred CCccchHHHHHHHHh-----cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh---------cCChHHHHHHHHHHH
Q 045105 21 RDCVSWNSVVTACAA-----NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ---------NGYDEEAIGMLFRMQ 86 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~ 86 (601)
.+...|...+.+... .++.++|+.+|++..+ ..|-+...|..+..++.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 556666666665322 2468899999999887 444556667666655442 244788999999888
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-chhH
Q 045105 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KN-EVSC 163 (601)
Q Consensus 87 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~ 163 (601)
+.. +-+...+..+...+...|++++|...++...+.+ +.+...+..+..++...|++++|...+++... |+ ...+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 763 3355677777777888899999999999998875 44566778888888899999999999988763 32 2233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHhc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF-GSVLIACA 242 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll~~~~ 242 (601)
..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++.. ..|+..+. +.+...+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHh
Confidence 444555667888999999998887654222344466677888889999999999988654 34444443 33444556
Q ss_pred ccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH
Q 045105 243 DMNSLRKGKEIHALAIALGL-QSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294 (601)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 294 (601)
..| +.+...++.+.+..- .+....+ +-..|.-.|+.+.+..+ ..+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 666 467776666654321 2222222 33334456666666655 44433
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=1e-05 Score=78.25 Aligned_cols=514 Identities=11% Similarity=0.075 Sum_probs=303.8
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh---cC-ChHHHHHHHHHHHHcCCC---CCHh
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ---NG-YDEEAIGMLFRMQAEGLE---PNAR 95 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---~~-~~~~a~~~~~~m~~~~~~---p~~~ 95 (601)
+.+|-..|..-.. .-..+-.-+|+...+ ..+-+...|...+..-.. .. -.+.+...++.-.++++. --..
T Consensus 27 vk~W~RYIe~k~~-sp~k~~~~lYERal~--~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpR 103 (835)
T KOG2047|consen 27 VKCWLRYIEHKAG-SPDKQRNLLYERALK--ELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPR 103 (835)
T ss_pred HHHHHHHHHHHcc-CChHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCH
Confidence 3455555554433 223445557777766 455666666655532211 10 112222222222111111 1224
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHh-cCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 045105 96 TLSSVLPACARLQKLSLGKEFHGYITRN-GFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG 174 (601)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 174 (601)
.|...+..+...+++......|+..+.. .+.....+|...+......+-++-+..++++...-++..-+-.|..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 5666677777888888888888877654 344455677778887778888889999998888777777888888899999
Q ss_pred CHHHHHHHHHHHHhc------CCCCCeeehHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCCh--hhHHHHHHHhcc
Q 045105 175 NVAEARELFDQMEHL------GVQRGIISWNSMISGYVDNSLYD---EAFSMFRDLLMRDGIEPTS--FTFGSVLIACAD 243 (601)
Q Consensus 175 ~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~ 243 (601)
++++|-+.+...... ..+.+...|..+....+++.+.- ....+++.+. +.-||. ..+..|...|.+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---RRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---ccCcHHHHHHHHHHHHHHHH
Confidence 999998888877532 11345556666665555544322 2334444433 233443 457778888889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhch----hcCCCCChhhhhH-HH
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMK----EDGFEPNVYTWNA-MQ 318 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~-~~ 318 (601)
.|.++.|..+|++....-.. ..-+..+-++|+. +++..-.. .|. +.|-..+...+.. +.
T Consensus 261 ~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~-------------FEE~~~~~-~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQ-------------FEESCVAA-KMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred hhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHH-------------HHHHHHHH-HHhhhhhcccChhhhhhHHHHHH
Confidence 99999999888887765322 2222233333332 11110000 111 1111112222211 33
Q ss_pred HHHHHHhCC-----------CCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhC-C----CCchhHHhHHHHHHHhcCC
Q 045105 319 LFSEMLSLD-----------LTPDIYTVGIILSACSSLATMERGKQVHAYAIRCG-Y----DSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 319 ~~~~~~~~~-----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~g~ 382 (601)
.|+.+...+ -+.++.++..-+ -...|+..+-...+.++++.- . ..-...+..+...|-..|+
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333333222 122233333322 233456667777777776541 1 1123456778888999999
Q ss_pred hHHHHHHHhcCCCCChhhHHHHH-------HHHHHcCChhhHHHHHHHHHHCCCC----------c-------cHHhHHH
Q 045105 383 LKHARLAYKRISTPDLVSQNAML-------TAYAMHGHGKEGIAHFRRILASGFR----------P-------DHISFLS 438 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~ll-------~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ 438 (601)
++.|..+|++..+.+-.+.+-|. ..-.++.+++.|+++.++....--. | +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 99999999998865444444443 4445678899999988887542111 1 1223555
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C-CC-CC-HHHHHHHHHHHHh--
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P-MA-PD-SVMWGALLGGCVS-- 512 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~-~~-~~~~~~l~~~~~~-- 512 (601)
.++.-...|-++....+|+.+.+..+-....+. .....+....-++++.+++++- + ++ |+ ...|+..+..+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 666666778888999999888877654332222 2333445666789999999886 2 22 44 4578887777654
Q ss_pred -cCChhHHHHHHHHHHhcCCCCC--chHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 513 -HGNLEFGQIAADRLIELEPNNT--GNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 513 -~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
....+.|..+++++.+.-|+.. ..|...+..-.+-|....|+.++++.-
T Consensus 562 gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2368999999999999888532 344445555556799999999998853
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=8.3e-07 Score=86.67 Aligned_cols=171 Identities=9% Similarity=0.074 Sum_probs=104.5
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 417 (601)
.+.+......|.+|..+++.+..... ....|..+.+.|+..|+++.|.++|-+. ..++-.|..|.+.|++..|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHH
Confidence 34455666778888888877766543 2344666777888888888888888553 3455667788888888888
Q ss_pred HHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 045105 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (601)
.++-.+.. |.......|..-..-+-..|++.+|.++|-.+. .|+ .-+.+|-+.|..++.+++..+..-.
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 87765543 223333455555555667777777777763321 232 2355666777777777777665212
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 045105 498 PDSVMWGALLGGCVSHGNLEFGQIAADRL 526 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 526 (601)
.-..|...+..-+-..|+...|++.+-++
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 22334445555555556665555554433
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=4.5e-08 Score=100.14 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=163.5
Q ss_pred CCCCChhhHHHHHHHHhh-----cCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHH---------hcCCcchHHHHHH
Q 045105 54 NETPNLVSWSAVIGGFTQ-----NGYDEEAIGMLFRMQAEGLEPNA-RTLSSVLPACA---------RLQKLSLGKEFHG 118 (601)
Q Consensus 54 ~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~ 118 (601)
..+.+...|...+.+... .+++++|..+|++..+. .|+. ..|..+..++. ..+++++|...++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 345667777777666422 23467899999999875 5543 44555544433 2234788999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe
Q 045105 119 YITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS--IK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI 195 (601)
Q Consensus 119 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 195 (601)
...+.. +.+...+..+..++...|++++|...|++.. .| +...+..+...+...|++++|...+++....... +.
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 998875 4466788888888899999999999999876 33 4567888899999999999999999999877522 23
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 045105 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVE 274 (601)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 274 (601)
..+..++..+...|++++|...+++... . ..|+ ...+..+..++...|+.++|...+..+.... +.+....+.+..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~-~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~ 483 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRS-Q-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYA 483 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHH-h-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHH
Confidence 3344455567778999999999998775 2 2343 3345666677888999999999998875542 223445566666
Q ss_pred HHHhcCCHHHHHHHhhhH
Q 045105 275 MYCRYQDLVAAQMAFDEI 292 (601)
Q Consensus 275 ~~~~~g~~~~a~~~~~~~ 292 (601)
.|+..|+ .|...++.+
T Consensus 484 ~~~~~g~--~a~~~l~~l 499 (553)
T PRK12370 484 EYCQNSE--RALPTIREF 499 (553)
T ss_pred HHhccHH--HHHHHHHHH
Confidence 7777774 666666644
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=1.3e-08 Score=94.99 Aligned_cols=189 Identities=15% Similarity=0.086 Sum_probs=94.2
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-HHhHHHHHHHHh
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-HISFLSALSACV 444 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 444 (601)
.|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|...|++.++. .|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34445555566666666666665544 233455666666666666666666666666653 343 345555555566
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P-MAPDSVMWGALLGGCVSHGNLEFGQIA 522 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 522 (601)
..|++++|.+.++...+. .|+..........+...++.++|...|++. . ..|+...| .......|+...+ +.
T Consensus 144 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE-TL 217 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-HH
Confidence 666666666666444332 232221111122233445566666666443 1 12222111 1122223443332 23
Q ss_pred HHHHH-------hcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 523 ADRLI-------ELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 523 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
++.+. +..|+.+.+|..++.++...|++++|...+++..+..+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33332 23344455666666666666666666666666655543
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=1e-07 Score=92.97 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=105.1
Q ss_pred CeeehHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CCCChhhH-HHHHHHhcccCCHHHHHHHHHHHHHc-----CC
Q 045105 194 GIISWNSMISGYVDNSLYDEAFSMFRDLLMR----DG-IEPTSFTF-GSVLIACADMNSLRKGKEIHALAIAL-----GL 262 (601)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~ 262 (601)
-..+...+...|...|+++.|..+++..++. .| ..|...+. +.+...|...+++++|..+|+.+... |-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666888899999999999998877652 12 13333333 23556788889999999999888653 21
Q ss_pred --CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC-CCCH-hHHHHH
Q 045105 263 --QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL-TPDI-YTVGII 338 (601)
Q Consensus 263 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~p~~-~~~~~l 338 (601)
+.-..+++.|..+|.+.|++++|...+++.-++. .. ..|. .|.. .-++.+
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~------------------------~~--~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY------------------------EK--LLGASHPEVAAQLSEL 331 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH------------------------HH--hhccChHHHHHHHHHH
Confidence 2223566777888999999999999888432222 22 0011 1222 235556
Q ss_pred HHHhcCCCchhhHHHHHHHHHHh---CCCC----chhHHhHHHHHHHhcCChHHHHHHHhcC
Q 045105 339 LSACSSLATMERGKQVHAYAIRC---GYDS----DVHIGTALVDMYAKCGSLKHARLAYKRI 393 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 393 (601)
...|+..++++.|..++....+. -+.+ -..+++.|...|.+.|++++|..+++++
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66677777777777777654432 1111 1234445555555555555555555443
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.7e-06 Score=81.40 Aligned_cols=221 Identities=12% Similarity=0.029 Sum_probs=125.3
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCc--hhHH-hHHHHHHHhcCChHH--HHHHHhcCCC--------------CCh
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSD--VHIG-TALVDMYAKCGSLKH--ARLAYKRIST--------------PDL 398 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~~l~~~~~~~g~~~~--a~~~~~~~~~--------------~~~ 398 (601)
+.-.+-..|+..+|..++...++....-. ..+. |.|+ ++....++-+ +...++.... ...
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33445667999999999999888765322 1222 2222 2222222211 2222222211 111
Q ss_pred hhHH-HHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh--ccCchHHHHHHHHHHHhcCCCcCchHHHHHH
Q 045105 399 VSQN-AMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV--HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMV 475 (601)
Q Consensus 399 ~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 475 (601)
...| .++..|. +..+.+.++...... ..|.. .+.+++..+. +...+..+..++....+....-+..+.-..+
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHH
Confidence 1122 2222222 223333333322221 23332 3444544433 2235677777776544443222344555667
Q ss_pred HHhhhcCChHHHHHHHH--------hCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC---CCCchHHH
Q 045105 476 DLLSRAGELGEAYEFIK--------KIP-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL----EP---NNTGNYVM 539 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~--------~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p---~~~~~~~~ 539 (601)
......|+++.|++++. .++ +.-.+.+..++...+.+.++.+.|..++..++.- .+ ....++..
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 77889999999999998 442 3345667778888888888888899888888753 12 12334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 540 LANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 540 l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++..-.+.|+-++|..+++++.+..
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhC
Confidence 6666678899999999999998754
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.1e-06 Score=86.87 Aligned_cols=300 Identities=12% Similarity=0.083 Sum_probs=151.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHH-hC-
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFSI--KNE-VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYV-DN- 208 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~- 208 (601)
-....+...|++++|++.++.... .|. .........+.+.|+.++|..+|..+...+ |+-..|...+..+. -.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 344566788999999999877653 243 345677788888999999999999998875 55555544444333 22
Q ss_pred ----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 045105 209 ----SLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSL-RKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 209 ----~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (601)
...+....+|+++.. .-|.......+.-.+..-..+ ..+...+..+...|+++ +++.|-..|....+..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 245667778877654 235555444443223221222 23445556666666433 4444444454333332
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCH--hHHHHHHHHhcCCCchhhHHHHHHHHHHh
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDI--YTVGIILSACSSLATMERGKQVHAYAIRC 361 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 361 (601)
-...++. .....+...|..+... ....-.|+. .++..+...+...|++++|..+++..+++
T Consensus 161 ~i~~l~~------~~~~~l~~~~~~~~~~-----------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 161 IIESLVE------EYVNSLESNGSFSNGD-----------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHH------HHHHhhcccCCCCCcc-----------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2222222 1111111111111000 001112333 23334445555666666666666666654
Q ss_pred CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHh---
Q 045105 362 GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHIS--- 435 (601)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--- 435 (601)
... .+..|..-...|-+.|++.+|...++.... .|...-+-....+.+.|+.++|..++......+..|-...
T Consensus 224 tPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 311 244555555555566666666655555543 2223333444455555666666665555555443222111
Q ss_pred ---H--HHHHHHHhccCchHHHHHHHHHH
Q 045105 436 ---F--LSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 436 ---~--~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
| .-...+|.+.|++..|++.|..+
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 11234455555555555555443
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=4e-06 Score=83.10 Aligned_cols=308 Identities=13% Similarity=0.096 Sum_probs=166.4
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcc
Q 045105 32 ACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLS 111 (601)
Q Consensus 32 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 111 (601)
.....|..++|..++++.++ |..|=..|-..|.|++|.++-+.--+- .-..||.....-+...++.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHH
Confidence 34556777888888877655 455556667778888888776654321 12235555555566666776
Q ss_pred hHHHHHHHH----------HHhc---------CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----------------
Q 045105 112 LGKEFHGYI----------TRNG---------FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---------------- 156 (601)
Q Consensus 112 ~a~~~~~~~----------~~~g---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------- 156 (601)
.|++.|+.. +... -..|...|.--....-..|+.+.|+.++....
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 666665432 1111 12233444444444445688888887776654
Q ss_pred --------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCC---------------hhH
Q 045105 157 --------IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSL---------------YDE 213 (601)
Q Consensus 157 --------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---------------~~~ 213 (601)
..|...+..+.+.|-..|++.+|..+|.+... +...|+.|-.++. .-.
T Consensus 956 kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~ 1026 (1416)
T KOG3617|consen 956 KAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVS 1026 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHH
Confidence 11334455556666666666666666655431 2222222222111 112
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHH--------HHHHc--CCCCchhHHHHHHHHHHhcCCHH
Q 045105 214 AFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHA--------LAIAL--GLQSDTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 214 a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 283 (601)
|-..|++ .|. -+...+..|-+.|.+.+|.++-- ++... ....|+...+.-.+.|+...+++
T Consensus 1027 aArYyEe----~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1027 AARYYEE----LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred HHHHHHH----cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 2222222 111 11122234556666666554311 11222 33456788888888999999999
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCC-CCCCH----hHHHHHHHHhcCCCchhhHHHHHHHH
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLD-LTPDI----YTVGIILSACSSLATMERGKQVHAYA 358 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~ 358 (601)
+|..++-...+....+.-....|+.... ++-+.|.... -.|+. ..+..+...|.+.|.+..|.+-|.+.
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vte------e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTE------EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhH------HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999988777766666655544443221 1111221111 22332 34666677888888888877666543
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCChHH
Q 045105 359 IRCGYDSDVHIGTALVDMYAKCGSLKH 385 (601)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~g~~~~ 385 (601)
-.. ...+.++.+.|+.++
T Consensus 1172 GdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1172 GDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred hhH---------HHHHHHHHhcCCcce
Confidence 221 234666777777654
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4.1e-08 Score=86.35 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=186.2
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 045105 63 SAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRC 142 (601)
Q Consensus 63 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 142 (601)
+.+..+|.+.|.+.+|.+.++.-.+. .|-..||..|-+.|.+..++..|+.++.+-++. ++.++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999988876 677789999999999999999999999988775 455666667788889999
Q ss_pred CCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHH
Q 045105 143 GDMLSALKIFSKFSIK---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFR 219 (601)
Q Consensus 143 ~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 219 (601)
++.++|.++++...+. ++.+...+...|--.++.+-|+..|..+.+.|+ .+...|+.+.-+|.-.+++|-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988733 666777777888889999999999999999995 677888889889999999999999999
Q ss_pred HHHHcCCCCCCh--hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 220 DLLMRDGIEPTS--FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 220 ~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.... .-..|+. ..|-.+-......|++..|.+.|.....++ ..+...+|.|.-.-.+.|++++|..++.
T Consensus 383 RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 383 RALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8876 3344443 345556666778899999999999888765 3456677888888889999999999888
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.4e-06 Score=73.63 Aligned_cols=316 Identities=10% Similarity=-0.003 Sum_probs=186.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV-LPAC 104 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~ 104 (601)
+++.+..+.+..++++|++++..-.+ ..+.+....+.|..+|-...++..|-++++++-.. .|...-|... ..++
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 56677778888899999999888776 44557888888888888899999999999998764 5665555432 3456
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHH--HHHhcCCHHHHHHHHhhcC-CCCchhHHHHHHHHHhcCCHHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVD--VYRRCGDMLSALKIFSKFS-IKNEVSCNTIIVGYCENGNVAEARE 181 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~ 181 (601)
.+.+.+..|+++...|... ++...-..-+. .....+|+..+..+++..+ +.+..+.+......-+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 6677888888888777543 11111111112 2234677888888888777 3555555555556667788888888
Q ss_pred HHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH----HHHHHHhcccCCH-HHHHHHHHH
Q 045105 182 LFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF----GSVLIACADMNSL-RKGKEIHAL 256 (601)
Q Consensus 182 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~ll~~~~~~~~~-~~a~~~~~~ 256 (601)
-|+...+-+--.+...||.-+ ++.+.++++.|++...++.. .|+.-.+..= .-.+.+- ..|+. ..+..-+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sal-- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSAL-- 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchh-cccchHHHHHHHH--
Confidence 887776644334445566443 44566778888888877776 5553221110 0000000 00000 0000000
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHH
Q 045105 257 AIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVG 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 336 (601)
...+|.-...+.+.|+++.|.+.+. +|+.+. .-..|+.|..
T Consensus 241 ---------~eAfNLKaAIeyq~~n~eAA~eaLt----------DmPPRa--------------------E~elDPvTLH 281 (459)
T KOG4340|consen 241 ---------VEAFNLKAAIEYQLRNYEAAQEALT----------DMPPRA--------------------EEELDPVTLH 281 (459)
T ss_pred ---------HHHhhhhhhhhhhcccHHHHHHHhh----------cCCCcc--------------------cccCCchhhh
Confidence 1122333334567788888887777 676211 1233444444
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC
Q 045105 337 IILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS 394 (601)
Q Consensus 337 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (601)
.+.-. -..+++....+-+..+...+. ....+|..++-.||+..-++-|-+++-+-.
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 33221 122334444444455554432 345677777778888887888777775544
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.5e-05 Score=80.89 Aligned_cols=458 Identities=10% Similarity=-0.005 Sum_probs=231.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 045105 27 NSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACAR 106 (601)
Q Consensus 27 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (601)
+.|..-.-+.++..-.+..++...+. ...+..+||.|...|..+++-.+-. . +-+..-=+....-||.
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~e--G~~d~a~hnAlaKIyIDSNNnPE~f------L----keN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQE--GSQDPATHNALAKIYIDSNNNPERF------L----KENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc--cCcchHHHhhhhheeecCCCChHHh------c----ccCCcchhhHHhhhhc
Confidence 33444455556666666666666663 3467778888888777655433211 1 1111111222334444
Q ss_pred cCCcchHHHHHHHHH----HhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-----------------CCCchhHHH
Q 045105 107 LQKLSLGKEFHGYIT----RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS-----------------IKNEVSCNT 165 (601)
Q Consensus 107 ~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~ 165 (601)
.+++.-|.-.|+.=. -.++....+.|....+.+.+..|.+--.+++.+-. ..|+.....
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 444433322221100 00011222344444555555555444444442211 125555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC--CCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 166 IIVGYCENGNVAEARELFDQMEHLG--VQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
-+.++...+-..+-.++++.+.-.. +.-+...-|.|+-...+. +..++.+..+++-. --.|+ +...+..
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdn--yDa~~------ia~iai~ 1060 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDN--YDAPD------IAEIAIE 1060 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhcc--CCchh------HHHHHhh
Confidence 7777777777778788877775322 111222233444443333 34455555555421 11122 1222333
Q ss_pred cCCHHHHHHHHHHHHHcC---------------------CCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 244 MNSLRKGKEIHALAIALG---------------------LQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
.+-+++|..+|+.....+ -...+.+|+.+..+-.+.|.+.+|.+-|-
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi------------ 1128 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI------------ 1128 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH------------
Confidence 344555555554331100 01123344555555555554444443333
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
-.-|+..|.-++..+.+.|.+++-.+++....+..-.|.+. +.|+-+|++.++
T Consensus 1129 -------------------------kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1129 -------------------------KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred -------------------------hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 12466779999999999999999999998888777666655 478889999999
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHH--------------------CCCCccHHhHHHHHHH
Q 045105 383 LKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA--------------------SGFRPDHISFLSALSA 442 (601)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--------------------~~~~p~~~~~~~l~~~ 442 (601)
+.+-+.++. .||......+..-|...|.++.|.-+|..... ..-..+..||.-+-.+
T Consensus 1182 l~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1182 LTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred HHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 888776653 24444444444444444444444433332111 0001233455555555
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHH
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
|...+.+.-|. |...++-....-..-|++-|...|-+++.+.+++.. |++ .....|.-|.-.|.+- ++++..
T Consensus 1259 Cvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred HhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 55544433221 112222233334556667777777777777777654 433 2444555555455543 356666
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
+.++.++..-- .-.+++++-++--|.|..-++.
T Consensus 1333 EHl~LFwsRvN-----ipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1333 EHLKLFWSRVN-----IPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred HHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654321 1234455555555665555443
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1e-06 Score=83.31 Aligned_cols=401 Identities=13% Similarity=0.121 Sum_probs=219.7
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-eeehHHHHHHHHhCCChh
Q 045105 137 DVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRG-IISWNSMISGYVDNSLYD 212 (601)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~ 212 (601)
.+.+..|+++.|...|.+.. ++|-+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567889999999887654 346677888888899999998888766665544 454 346888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCCh-hhHHHHHHHhcccCCHHHHH-HHHHHH-HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHh
Q 045105 213 EAFSMFRDLLMRDGIEPTS-FTFGSVLIACADMNSLRKGK-EIHALA-IALGLQSDTFVGGALVEMYCRYQDLVAAQMAF 289 (601)
Q Consensus 213 ~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~-~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (601)
+|+.-|.+-+. ..|+. ..++-+..++ ..+.+. +.+..- .-.++..++.+ ..+.....+..-+..+
T Consensus 88 eA~~ay~~GL~---~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t-----~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLE---KDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLT-----NYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHhh---cCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhh-----hhhhccHHHHHHHHHh
Confidence 99998887665 34443 3444454444 111111 100000 00111112211 1121111111111111
Q ss_pred hhH----------HHHHHHHhhchh--------cCCCCChhhhh-------HHHHHHHHHh-CCCCCCHhHHHHHHHHhc
Q 045105 290 DEI----------ENIENLLGKMKE--------DGFEPNVYTWN-------AMQLFSEMLS-LDLTPDIYTVGIILSACS 343 (601)
Q Consensus 290 ~~~----------~~~~~~~~~~~~--------~g~~~~~~~~~-------~~~~~~~~~~-~~~~p~~~~~~~li~~~~ 343 (601)
... ....+....+.. .|..+....-+ ......++.+ ...+--..-...+.++..
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 100 000000000000 00000000000 0000000000 000000112344555566
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHH-------HHHHHHHHcCC
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDL---VSQN-------AMLTAYAMHGH 413 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~-------~ll~~~~~~~~ 413 (601)
+..+++.+.+-+....+.. -++.-++....+|...|.+......-+...+... .-|+ .+..+|.+.++
T Consensus 236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 6666777777776666655 3445555666667777776666555444332111 1122 23345666677
Q ss_pred hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch-HHHHHHHHhhhcCChHHHHHHHH
Q 045105 414 GKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK-HYTCMVDLLSRAGELGEAYEFIK 492 (601)
Q Consensus 414 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 492 (601)
++.++..|++.+.....|+.. .+....+++......... +.|... -...=...+.+.|++..|++.+.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 888888888866654444432 122233444444322222 223221 11122556778899999999888
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 493 KI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 493 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++ ...| |...|..-.-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.+++.++.+
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87 3345 677788888888889999999999999999999888888888888888999999999888877666
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=5.3e-07 Score=75.83 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=137.5
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAM 410 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~ 410 (601)
+...+.-.|...|+...|..-+++..+... .+..++..+...|.+.|+.+.|.+.|++.. +.+....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 344556677788888888888888777652 355666677777888888888888887665 3455677777777888
Q ss_pred cCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHH
Q 045105 411 HGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 489 (601)
+|++++|...|++....-.-|.. .||..+.-+..+.|+.+.|...|+...+.. +-...+.-.+.+...+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 88888888888887775433333 367777777778888888888885544432 2223455667777778888888887
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 490 FIKKI--PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 490 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
+++.. ...++..+..-.+..-...||.+.+.+.=.++....|..
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 77766 223566666666666667788877777777777777743
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.6e-07 Score=86.40 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=102.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh----ccCc
Q 045105 373 LVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV----HAGS 448 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~ 448 (601)
....+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ....
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 334566778888888888765 45566666778888888888888888888764 3443 3333444332 2336
Q ss_pred hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-hHHHHHHHH
Q 045105 449 IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNL-EFGQIAADR 525 (601)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 525 (601)
+.+|..+|+++.+ ..++++.+.+.+..+....|++++|.+++++. ...| ++.+...++......|+. +.+.+.+.+
T Consensus 183 ~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 7888888877544 45677777777888888888888888887765 3334 455566666666666665 667778888
Q ss_pred HHhcCCCCC
Q 045105 526 LIELEPNNT 534 (601)
Q Consensus 526 ~~~~~p~~~ 534 (601)
+.+..|+++
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 777777544
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=2.9e-06 Score=74.04 Aligned_cols=416 Identities=14% Similarity=0.085 Sum_probs=256.9
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH-HHH
Q 045105 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEP-NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG-LVD 137 (601)
Q Consensus 60 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~ 137 (601)
--+.+++..+.+..+++.|++++..-.++ .| +....+.|..+|....++..|-..++++-.. .|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 34777888888999999999999988876 44 6667777888888999999999999998775 444444432 245
Q ss_pred HHHhcCCHHHHHHHHhhcCCC-CchhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 138 VYRRCGDMLSALKIFSKFSIK-NEVSCNTIIVG--YCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
.+.+.+.+..|+++...|... +...-..-+.+ .-..+++..+..++++....| +..+.+.......+.|+++.|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 566788999999999988864 32222222333 335788888888888876433 344444555566789999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIEN 294 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 294 (601)
++-|+...+-.|..|- ..|+..+ +..+.++.+.|.+...++.++|++..+..--
T Consensus 164 vqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI------------------------ 217 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI------------------------ 217 (459)
T ss_pred HHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc------------------------
Confidence 9999999887777764 4565554 4557788888999998888888654332210
Q ss_pred HHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHH
Q 045105 295 IENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV 374 (601)
Q Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (601)
.|.-.| ||..+. .+. ...-+++ -+..+|.-.
T Consensus 218 ------Gm~teg--iDvrsv---------------gNt--~~lh~Sa------------------------l~eAfNLKa 248 (459)
T KOG4340|consen 218 ------GMTTEG--IDVRSV---------------GNT--LVLHQSA------------------------LVEAFNLKA 248 (459)
T ss_pred ------cceecc--Cchhcc---------------cch--HHHHHHH------------------------HHHHhhhhh
Confidence 111111 111100 000 0000000 112334444
Q ss_pred HHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch
Q 045105 375 DMYAKCGSLKHARLAYKRIST-----PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449 (601)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (601)
..+.+.|+++.|.+.+-.|++ .|++|...+.-.= ..+++.+..+-+.-++... +--..||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 556788999999999988883 5667766553221 2355666777777777653 22346899999999999999
Q ss_pred HHHHHHHHHHHhcCCC-cCchHHHHHHHHhhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCh----hHHHHH
Q 045105 450 KTGSEFFDLMAYYDVK-PSLKHYTCMVDLLSRA-GELGEAYEFIKKIPMAPDSVMWGALLGGC-VSHGNL----EFGQIA 522 (601)
Q Consensus 450 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~----~~a~~~ 522 (601)
+.|..++.+-...... .+...|+ |++++... -..++|.+-++.+....-...-...+..- .+..+- ..+++-
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~ 405 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE 405 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9998887441111111 1222333 44555443 35677766665552111111111111111 122222 223344
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 523 ADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
++...++ -..+...-+++|++..++..+.++|+.-.+.
T Consensus 406 Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 406 YDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 4555554 2236667788999999999999999865543
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=0.00011 Score=73.34 Aligned_cols=31 Identities=6% Similarity=0.091 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..|..|+..+.+..+|..|.+.+++|+.+.+
T Consensus 1331 ~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1331 RLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 4677788899999999999999999987764
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=3.1e-05 Score=76.78 Aligned_cols=378 Identities=13% Similarity=0.050 Sum_probs=222.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 045105 158 KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237 (601)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 237 (601)
.+...|..+.-++...|+++.+-+.|++....- -.....|+.+-..|...|.-..|+.+++.......-+++...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 366678888899999999999999999986432 3455678888889999999999999998765422222233333333
Q ss_pred HHHhc-ccCCHHHHHHHHHHHHHc--CC--CCchhHHHHHHHHHHhc----CCHHHHHHHhhhHHHHHHHHhhchhcCCC
Q 045105 238 LIACA-DMNSLRKGKEIHALAIAL--GL--QSDTFVGGALVEMYCRY----QDLVAAQMAFDEIENIENLLGKMKEDGFE 308 (601)
Q Consensus 238 l~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~g~~ 308 (601)
-..|. +.+.++++..+-.++... +. ...+..+..+.-+|... ....+-.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~---------------------- 457 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD---------------------- 457 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH----------------------
Confidence 33343 456677766666655541 11 11223333333333321 1000000
Q ss_pred CChhhhhHHHHHHHHHh-CCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH
Q 045105 309 PNVYTWNAMQLFSEMLS-LDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR 387 (601)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 387 (601)
...-.++..+++-.+ ..-.|+...|..+- ++..++++.|.....+..+.+-.-++..+..+.-.+...+++.+|+
T Consensus 458 --~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 458 --ALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred --HHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 000011222222222 22345554554443 4455788999999999888877778888888888888899999998
Q ss_pred HHHhcCCCCChhhHH---HHHHHHHHcCChhhHHHHHHHHHH---------------------CCC-----Ccc--HHhH
Q 045105 388 LAYKRISTPDLVSQN---AMLTAYAMHGHGKEGIAHFRRILA---------------------SGF-----RPD--HISF 436 (601)
Q Consensus 388 ~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~---------------------~~~-----~p~--~~~~ 436 (601)
.+.+.........++ .-+..-..-++.++++.....++. .|+ .|. ..++
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 888765521111111 111111223444444444333321 010 111 1122
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCch--------HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK--------HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGAL 506 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 506 (601)
..+..-....+ ..+..- ..+....+.|+.. .|......+.+.+..++|..-+.+. .+.| ....|.-.
T Consensus 614 r~ls~l~a~~~--~~~~se-~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 614 RYLSSLVASQL--KSAGSE-LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred HHHHHHHHhhh--hhcccc-cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 22222111100 000000 0011122223322 3445566778888889998777666 3344 55666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH--HHHHHhhcCC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR--TRQKMKDRRM 565 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~l~~~~~~~~ 565 (601)
...+...|..++|.+.|..+..++|+++.+...++.++.+.|+-.-|.. ++..+.+.++
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 6667788999999999999999999999999999999999998887777 8888888774
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=7.5e-08 Score=91.54 Aligned_cols=217 Identities=13% Similarity=0.118 Sum_probs=170.9
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHH
Q 045105 342 CSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGI 418 (601)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~ 418 (601)
+.+.|++..|.-.|+..++... -+...|..|.......++-..|+..+.+.. +.|....-.|.-+|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4577889999999988887653 367778878777787888778888887766 455567777778899999999999
Q ss_pred HHHHHHHHCCCC-----c---cHHhHHHHHHHHhccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHH
Q 045105 419 AHFRRILASGFR-----P---DHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489 (601)
Q Consensus 419 ~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 489 (601)
..++..+....+ + +...-.. ..+.....+....++| +.....+..+|+.+...|.-.|.-.|++++|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988664210 0 0000000 1222333345566666 777777777888899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 490 FIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 490 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
-|+.+ ..+| |...|+.|...++...+.++|+..|.++.++.|.-..+.+.|+-.|...|.|++|.+.|-+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99987 5677 778999999999999999999999999999999999999999999999999999999977654
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=1.6e-05 Score=80.80 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=116.6
Q ss_pred CCchhHHHHHhhCCCCCcc---chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHH
Q 045105 6 GSLDDAKKVFKMMPERDCV---SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGML 82 (601)
Q Consensus 6 g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 82 (601)
++...|...|=+..+-++. .|..|...|....+...|...|+...+ ....+...+......|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3455666666666554433 688888888887788888888888877 55667778888888888888888888873
Q ss_pred HHHHHcCCCCC-Hh--hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 045105 83 FRMQAEGLEPN-AR--TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN 159 (601)
Q Consensus 83 ~~m~~~~~~p~-~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 159 (601)
-.--+. .|- .. .|..+--.+...++..++..-|+...+.. +-|...|..+..+|.++|++..|.++|.+...-+
T Consensus 550 l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 550 LRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 332221 111 11 12222223455677777777777777654 4566788888888888888888888887665433
Q ss_pred ch-hHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 045105 160 EV-SCNTI--IVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 160 ~~-~~~~l--i~~~~~~g~~~~a~~~~~~m~~ 188 (601)
+. +|... ....+..|.+.+|+..+.....
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 22222 2234557778888877776653
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=0.0001 Score=67.68 Aligned_cols=303 Identities=13% Similarity=0.074 Sum_probs=192.8
Q ss_pred CCCCHhhHHHHHHHHHhc--CCcchHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchh---H
Q 045105 90 LEPNARTLSSVLPACARL--QKLSLGKEFHGYITR-NGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVS---C 163 (601)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~ 163 (601)
+.|...+....+.+++.. ++-..+...+-.+.. .-++.++.....+.+++...|+.+.|...|+....-|..+ .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 344444555555555443 444444444444433 3356778899999999999999999999999877444333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh-hhHHHHHHHhc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS-FTFGSVLIACA 242 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~ 242 (601)
....-.+.+.|+.+....+...+.... .-....|-.-.......+++..|+.+-++..+ +.|+. ..|..--..+.
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID---SEPRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc---cCcccchHHHhccHHHH
Confidence 333445667888888888887776432 12333344445556678889999999887765 33332 22322234566
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHH
Q 045105 243 DMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSE 322 (601)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (601)
..++.+.|.-.|....... +.+...|..|+++|...|++.+|.-.-+. ..+.|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~------~~~~~~------------------- 399 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW------TIRLFQ------------------- 399 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH------HHHHhh-------------------
Confidence 7888888888887776543 45678999999999999999888755441 111111
Q ss_pred HHhCCCCCCHhHHHHHH-HHhc-CCCchhhHHHHHHHHHHhCCCCc-hhHHhHHHHHHHhcCChHHHHHHHhcCC--CCC
Q 045105 323 MLSLDLTPDIYTVGIIL-SACS-SLATMERGKQVHAYAIRCGYDSD-VHIGTALVDMYAKCGSLKHARLAYKRIS--TPD 397 (601)
Q Consensus 323 ~~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~ 397 (601)
.+..+.+.+- ..|. ...--++|..+++...+.. |+ ....+.+...+...|+.++++.++++.. .+|
T Consensus 400 -------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 400 -------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred -------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 1222222221 1111 1223356666666554432 32 3344566777788888888888888766 588
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH 433 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (601)
....+.|...+...+.+.+|++.|...+.. .|+.
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 888888888888888888888888887774 4543
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.81 E-value=4.3e-06 Score=78.18 Aligned_cols=231 Identities=11% Similarity=-0.076 Sum_probs=129.5
Q ss_pred CChHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHH
Q 045105 37 GLVLEALECLERMSSLDNETPN--LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGK 114 (601)
Q Consensus 37 ~~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 114 (601)
+..+.++..+.++.......|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4456666666666653111121 3446666667777777777777777776652 334566777777777777777777
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 045105 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ 192 (601)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 192 (601)
..|+..++.. +.+..++..+..++...|++++|.+.|+.... |+..............++.++|.+.|.+..... .
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 7777777653 22345666666677777777777777776653 222111111222334567778877776544322 2
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-----ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchh
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEP-----TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTF 267 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (601)
|+. |. ........|+...+ +.+..+.......| ....|..+-..+...|+.++|...|+.....++...+.
T Consensus 197 ~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 197 KEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred ccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 222 22 12222334554443 23433332111111 12456666777778888888888888877766433333
Q ss_pred HHHHHHH
Q 045105 268 VGGALVE 274 (601)
Q Consensus 268 ~~~~li~ 274 (601)
.-.+++.
T Consensus 273 ~~~~~~e 279 (296)
T PRK11189 273 HRYALLE 279 (296)
T ss_pred HHHHHHH
Confidence 3333443
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00016 Score=68.96 Aligned_cols=440 Identities=13% Similarity=0.105 Sum_probs=253.5
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
-|..+|+.|+.-+..+ .++++++.++++.. ..+-....|..-|..-.+.++++..+.+|.+-... ..+...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 3778999999988777 99999999999987 66777889999999999999999999999997765 3345555555
Q ss_pred HHHHHhc-CCcch----HHHHHHHHH-HhcCCCc-hHHHHHHHHH---------HHhcCCHHHHHHHHhhcCCC------
Q 045105 101 LPACARL-QKLSL----GKEFHGYIT-RNGFMSN-PFVVNGLVDV---------YRRCGDMLSALKIFSKFSIK------ 158 (601)
Q Consensus 101 l~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~------ 158 (601)
|.-..+. ++... ..+.|+... +.|..+- -..|+..+.. |....+++...++++++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 5443332 23332 223344333 4554433 2345554433 23344677778888877632
Q ss_pred ----CchhHHHHHHHH-------HhcCCHHHHHHHHHHHHh--cCCCCCeee---------------hHHHHHHHHhCCC
Q 045105 159 ----NEVSCNTIIVGY-------CENGNVAEARELFDQMEH--LGVQRGIIS---------------WNSMISGYVDNSL 210 (601)
Q Consensus 159 ----~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~g~~~~~~~---------------~~~li~~~~~~~~ 210 (601)
|-.+|..=|+.. -+...+..|.++++++.. .|+.....+ |-.+|..=-.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111222222211 123446678888877753 344432222 3223322111111
Q ss_pred --------hhHHHHHHHHHHHcCCCCCChhhH-HHHH----HHhcccCC-------HHHHHHHHHHHHHcCCCCchhHHH
Q 045105 211 --------YDEAFSMFRDLLMRDGIEPTSFTF-GSVL----IACADMNS-------LRKGKEIHALAIALGLQSDTFVGG 270 (601)
Q Consensus 211 --------~~~a~~~~~~~~~~~~~~p~~~~~-~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 270 (601)
-....-.+++.+..-+..|+.... ...+ +.+...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222333333323344433221 1111 11222233 233334443333322222222222
Q ss_pred HHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhh
Q 045105 271 ALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMER 350 (601)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 350 (601)
.+.+ .+++.. .+..--.....+..+...-..--..+|...++.-.+..-+..
T Consensus 333 ~~a~-------~eE~~~---------------------~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 333 ALAD-------YEESRY---------------------DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred HHHh-------hHHHhc---------------------ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 2221 111100 000000001222222222122223457778888888899999
Q ss_pred HHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 351 GKQVHAYAIRCGYDS-DVHIGTALVDMYAKCGSLKHARLAYKRIST--PDLV-SQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 351 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
|+.+|.+..+.+..+ ++.++++++..|| .++..-|.++|+.-.+ +|.. --...+.-+...++-..+..+|++.+.
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 999999999988777 7888889998877 5888999999987652 4444 445677788888999999999999999
Q ss_pred CCCCccH--HhHHHHHHHHhccCchHHHHHHHHH-HHhcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 427 SGFRPDH--ISFLSALSACVHAGSIKTGSEFFDL-MAYYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 427 ~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
.++.|+. ..|..++..=..-|+...+.++-+. +.... ..+....-..+++-|.-.+....-..-++.+
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9777776 4899999988899999999988844 33222 2333334455666676666554444444444
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=5.4e-07 Score=78.14 Aligned_cols=151 Identities=11% Similarity=0.119 Sum_probs=112.8
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...... +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4457778887776444332221 11 01223566677777775444433 56677899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGC-VSHGN--LEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++.+.+|+++.++..++.++...|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 4456 666777777764 66676 59999999999999999999999999999999999999999999
Q ss_pred HhhcCCccC
Q 045105 560 MKDRRMHKS 568 (601)
Q Consensus 560 ~~~~~~~~~ 568 (601)
+.+...+.+
T Consensus 170 aL~l~~~~~ 178 (198)
T PRK10370 170 VLDLNSPRV 178 (198)
T ss_pred HHhhCCCCc
Confidence 988876544
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=5.7e-05 Score=83.60 Aligned_cols=367 Identities=9% Similarity=-0.026 Sum_probs=196.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCchh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 137 DVYRRCGDMLSALKIFSKFSIKNEVS--CNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
..+...|++..|.............. ...........|+++.+..+++.+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 33444555555554444443221111 1122334556778877777777663221122333334445556678899999
Q ss_pred HHHHHHHHHcCCC-----CCChh--hHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHH
Q 045105 215 FSMFRDLLMRDGI-----EPTSF--TFGSVLIACADMNSLRKGKEIHALAIALGLQSDT----FVGGALVEMYCRYQDLV 283 (601)
Q Consensus 215 ~~~~~~~~~~~~~-----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 283 (601)
..++........- .|... .....-..+...|+++.|...++.........+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 9888876542111 11111 1112223456789999999999887764212221 23455666677899999
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC-CCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL-TPDIYTVGIILSACSSLATMERGKQVHAYAIRC- 361 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 361 (601)
.|...+...... .. ..|. .+...++..+...+...|+++.|...+......
T Consensus 509 ~A~~~~~~al~~------~~---------------------~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 509 RALAMMQQTEQM------AR---------------------QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHHH------Hh---------------------hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 998888732111 00 0010 011223445566677888999988887766542
Q ss_pred ---CCC--C-chhHHhHHHHHHHhcCChHHHHHHHhcCCC------C--ChhhHHHHHHHHHHcCChhhHHHHHHHHHHC
Q 045105 362 ---GYD--S-DVHIGTALVDMYAKCGSLKHARLAYKRIST------P--DLVSQNAMLTAYAMHGHGKEGIAHFRRILAS 427 (601)
Q Consensus 362 ---~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 427 (601)
+.. + ....+..+...+...|++++|...+..... + ....+..+...+...|++++|...+++....
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 211 1 122233444556667888888777766531 1 1223334455666778888888877776542
Q ss_pred CCCc-cHHhH-----HHHHHHHhccCchHHHHHHHHHHHhcCCCcCch----HHHHHHHHhhhcCChHHHHHHHHhC---
Q 045105 428 GFRP-DHISF-----LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK----HYTCMVDLLSRAGELGEAYEFIKKI--- 494 (601)
Q Consensus 428 ~~~p-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~--- 494 (601)
.-.. ....+ ...+..+...|+.+.|..++........ .... .+..+..++...|+.++|...+++.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 642 LGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1010 00101 1112333446777777777644322111 1111 1234556677777777777777665
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 495 ----PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 495 ----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+..+ ...+...+..++...|+.++|.+.+.++.++..
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 1111 123444555667777888888888888887764
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=3.5e-05 Score=68.87 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=127.7
Q ss_pred HHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChh
Q 045105 339 LSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 339 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~ 415 (601)
+..+...|+...|......+.+.. +.|...+..-..+|...|++..|+.=++... ..+...+--+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 334445566666666666666543 3466677777777888888888876655443 455555556666677778888
Q ss_pred hHHHHHHHHHHCCCCccHHh----HHHH---H------HHHhccCchHHHHHHHHHHHhcCCC-c--CchHHHHHHHHhh
Q 045105 416 EGIAHFRRILASGFRPDHIS----FLSA---L------SACVHAGSIKTGSEFFDLMAYYDVK-P--SLKHYTCMVDLLS 479 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~----~~~l---~------~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~ 479 (601)
.++...++-++ +.||... |..| . ......+.|.++....+...+.... + ....+..+..++.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 88888887776 4676542 2111 1 1223455666666666444443322 1 1234556667777
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 480 RAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
..|++.+|+....+. ...|+ ..++.--..+|.-..+++.|+.-|+++.+.+|+|..+-.
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 888899998888776 45564 667777777888888889999999999888887655433
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.8e-05 Score=70.35 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=71.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCC
Q 045105 31 TACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA-RTLSSVLPACARLQK 109 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~ 109 (601)
.+....|+++.|+.+|.+... ..++|.+.|+.-..+|++.|++++|++=-.+-++. .|+- ..|+..-.++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~--l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIM--LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHc--cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 345567788888888887777 45667778888888888888888777666555543 4542 357777777777778
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVY 139 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 139 (601)
+++|...|..-++.. +.+...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 888888777766653 44455666666665
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=4.6e-05 Score=74.17 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=106.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-CccH--HhHHHHHHHHhc
Q 045105 372 ALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RPDH--ISFLSALSACVH 445 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~ 445 (601)
.+...+...|++++|...+++.. +.+...+..+...|...|++++|..++++...... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34445566666666666666554 23344556666667777777777777776665421 1222 234456666677
Q ss_pred cCchHHHHHHHHHHHhcCC-CcCchHH-H--HHHHHhhhcCChHHHHHH--H-Hh---C-CCCCCHHHHHHHHHHHHhcC
Q 045105 446 AGSIKTGSEFFDLMAYYDV-KPSLKHY-T--CMVDLLSRAGELGEAYEF--I-KK---I-PMAPDSVMWGALLGGCVSHG 514 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~---~-~~~~~~~~~~~l~~~~~~~g 514 (601)
.|++++|..+++....... .+..... + .++.-+...|....+.+. + .. . ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 7777777777755432221 1111111 1 222222333322222211 1 11 1 10111122224556667788
Q ss_pred ChhHHHHHHHHHHhcC-C--------CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 515 NLEFGQIAADRLIELE-P--------NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+.+.|...++.+.... . .........+.++...|++++|.+.+.+....+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888876532 1 134455667778889999999999999887655
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=6.8e-05 Score=76.49 Aligned_cols=450 Identities=12% Similarity=0.037 Sum_probs=262.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----chhHHHHHHHH
Q 045105 96 TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN-----EVSCNTIIVGY 170 (601)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~ 170 (601)
.|..|-..|+...+...|.+.|+..-+.. ..+........+.|++..+++.|..+.-...+.+ ...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 46666666666666667777777766543 3455667778888888888888888844333221 11244455567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH--HhcccCCHH
Q 045105 171 CENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI--ACADMNSLR 248 (601)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~ 248 (601)
.+.++..+|..-|+...... +.|...|..++.+|.+.|++..|++.|.+... +.|+. +|..... .-+..|.+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhHH
Confidence 77888888888888887665 45788899999999999999999999987654 55654 3333222 245678888
Q ss_pred HHHHHHHHHHHcC------CCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhh----HHH
Q 045105 249 KGKEIHALAIALG------LQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWN----AMQ 318 (601)
Q Consensus 249 ~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~ 318 (601)
++...+..+.... ...-..++-.+...+.-.|-..+|.+.++.-- ..+..........+...|. +..
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi---e~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI---ESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 8888887765431 11112233333333333444444444444211 1111111111122333332 233
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHH-----HHHhCCCCchhHHhHHHHHHHh----cC----ChHH
Q 045105 319 LFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAY-----AIRCGYDSDVHIGTALVDMYAK----CG----SLKH 385 (601)
Q Consensus 319 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~ 385 (601)
+|-+.. .. .|+.....++..-....+...+-. ++-- ........++..+..+...|.+ +| +...
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 333333 11 344433333333233333221111 0000 0011111223333333333332 22 2335
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhc
Q 045105 386 ARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 386 a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (601)
|...++... ..+..+||.|.-. ...|++.-|.-.|-+-.... +.+..+|..+.-.+....+++.|...|...+..
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 677776655 4667788877655 55577777777776665542 444568888888889999999999999886654
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHH----------HHHH
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-------PMAPDSVMWGALLGGCVSHGNLEFGQI----------AADR 525 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~----------~~~~ 525 (601)
. +.+...|--........|+.-++..+|..- +-.|+..-|-....-....|+++.-+. .+++
T Consensus 880 d-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 880 D-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred C-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 3 334445544444445778888888888652 223555555555555555665554443 4555
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 526 LIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
.....|+...+|...+..+-+.+.+.+|.+...++
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 66668999999999999999999999998886654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=1.5e-06 Score=78.89 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=109.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC-h---hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH----h
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIST--PD-L---VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI----S 435 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 435 (601)
....+..+...+...|++++|...|+++.. |+ . ..+..+..+|...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 444555566666777777777777776552 22 1 24555666777777777777777777664 33221 2
Q ss_pred HHHHHHHHhcc--------CchHHHHHHHHHHHhcCCCcCc-hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 045105 436 FLSALSACVHA--------GSIKTGSEFFDLMAYYDVKPSL-KHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGAL 506 (601)
Q Consensus 436 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 506 (601)
+..+..++... |++++|.+.++.+... .|+. ..+..+... +...... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 33333344332 5566666666544433 2221 111111110 0000000 0011245
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
...+.+.|+++.|...++++.+..|+++ ..+..++.++...|++++|...++.+..+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5668889999999999999999987644 688999999999999999999999887665
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=8.9e-05 Score=72.17 Aligned_cols=263 Identities=8% Similarity=-0.048 Sum_probs=155.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChh-hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLV-SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
.|..+...+...|+.+.+...+....+.....++.. ........+...|++++|.+.+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 456666667777888887777777665322222221 12223445667899999999999987752 333333332 212
Q ss_pred HHh----cCCcchHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCC
Q 045105 104 CAR----LQKLSLGKEFHGYITRNGFMSN-PFVVNGLVDVYRRCGDMLSALKIFSKFSI---KNEVSCNTIIVGYCENGN 175 (601)
Q Consensus 104 ~~~----~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~ 175 (601)
+.. .+....+.+.++. ..+..|+ ......+...+...|++++|.+.+++... .+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 222 3444444444443 1122233 33444566678889999999999988763 356678888899999999
Q ss_pred HHHHHHHHHHHHhcCCC-CCe--eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhH-H--HHHHHhcccCCHHH
Q 045105 176 VAEARELFDQMEHLGVQ-RGI--ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTF-G--SVLIACADMNSLRK 249 (601)
Q Consensus 176 ~~~a~~~~~~m~~~g~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~ll~~~~~~~~~~~ 249 (601)
+++|...+++....... |+. ..|..+...+...|++++|..++++........+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 99999999988765321 222 234567888999999999999999875422211222211 1 22333333443333
Q ss_pred HHHH---HHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHhhh
Q 045105 250 GKEI---HALAIALGL-QSDTFVGGALVEMYCRYQDLVAAQMAFDE 291 (601)
Q Consensus 250 a~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 291 (601)
+.+. ......... ............++...|+.+.|...++.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3332 222111100 11122223566777889999999988883
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=3.9e-07 Score=83.82 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=146.5
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CC----ChhhHHHHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TP----DLVSQNAMLTAY 408 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~----~~~~~~~ll~~~ 408 (601)
....+.+++...|..+.+. ..+.+.. .|.......+...+...++-+.+..-++... .+ +..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4455667777777665433 3333333 5666666555555544455566666555443 22 222222222345
Q ss_pred HHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCCh
Q 045105 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGEL 484 (601)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 484 (601)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+.. .| .+...|..++.. ...+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 5679999999888653 344566677889999999999999998887643 33 344455555432 3369
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 045105 485 GEAYEFIKKIP--MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRW-SDLARTRQKMK 561 (601)
Q Consensus 485 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~l~~~~ 561 (601)
.+|..+|+++. ..+++.+.+.+..++...|++++|++.++++.+.+|+++.++..++-+....|+. +.+.+++.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999983 3467788888888899999999999999999999999999999999998999998 67888888888
Q ss_pred hcC
Q 045105 562 DRR 564 (601)
Q Consensus 562 ~~~ 564 (601)
+..
T Consensus 264 ~~~ 266 (290)
T PF04733_consen 264 QSN 266 (290)
T ss_dssp HHT
T ss_pred HhC
Confidence 765
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=4.7e-07 Score=74.22 Aligned_cols=94 Identities=10% Similarity=-0.091 Sum_probs=57.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
+..+...+...|++++|...|+.. ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334455556666666666666655 2333 45555666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHhhcC
Q 045105 549 RWSDLARTRQKMKDRR 564 (601)
Q Consensus 549 ~~~~A~~~l~~~~~~~ 564 (601)
++++|...+++..+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666655544
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=2.5e-06 Score=69.93 Aligned_cols=124 Identities=10% Similarity=0.008 Sum_probs=97.7
Q ss_pred HHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 045105 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM 496 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 496 (601)
..++++.++ +.|+. +..+..++...|++++|...|+...... +.+...|..+..++.+.|++++|+..|++. ..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345566655 35654 4456677788999999999997765543 446778888889999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 497 AP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 497 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
.| +...+..+...+...|++++|...++++.+..|+++..+...+.++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 55 677888888889999999999999999999999999888887776543
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.1e-07 Score=54.99 Aligned_cols=32 Identities=25% Similarity=0.617 Sum_probs=18.4
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
|+.||..+|++|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00032 Score=77.77 Aligned_cols=302 Identities=8% Similarity=-0.032 Sum_probs=160.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC----CCC---c-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe----ee
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFS----IKN---E-----VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI----IS 197 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~----~~~---~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~ 197 (601)
.....+...|+++++...+.... ..+ . .....+...+...|++++|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34444556677777777765442 111 1 11122234455678888888888776543111111 22
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CC--ChhhHHHHHHHhcccCCHHHHHHHHHHHHHc----CCC--C-ch
Q 045105 198 WNSMISGYVDNSLYDEAFSMFRDLLMRDGI--EP--TSFTFGSVLIACADMNSLRKGKEIHALAIAL----GLQ--S-DT 266 (601)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 266 (601)
.+.+...+...|++++|...+.+......- .+ ....+..+...+...|+++.|...+.+.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 344555666778888888877776531110 01 1123344445566778888887777665542 211 1 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCC
Q 045105 267 FVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLA 346 (601)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 346 (601)
..+..+...+...|++++|...+.. .... ....+.......+..+.......|
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~----------al~~-----------------~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARK----------GLEV-----------------LSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH----------hHHh-----------------hhccCchHHHHHHHHHHHHHHHcC
Confidence 2334455556667888888777662 2100 000010011223444555666778
Q ss_pred chhhHHHHHHHHHHhCCCC-chhHH-----hHHHHHHHhcCChHHHHHHHhcCCCCChh-------hHHHHHHHHHHcCC
Q 045105 347 TMERGKQVHAYAIRCGYDS-DVHIG-----TALVDMYAKCGSLKHARLAYKRISTPDLV-------SQNAMLTAYAMHGH 413 (601)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~ll~~~~~~~~ 413 (601)
+.+.|...+.......... ....+ ...+..+...|+.+.|...+.....+... .+..+..++...|+
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 706 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQ 706 (903)
T ss_pred CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCC
Confidence 8888888777765421110 00000 11223345577888888777665532111 12345566777788
Q ss_pred hhhHHHHHHHHHHC----CCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhc
Q 045105 414 GKEGIAHFRRILAS----GFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 414 ~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 462 (601)
+++|...+++.... |..++. .+...+..++...|+.++|...+....+.
T Consensus 707 ~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 707 FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888776553 222222 24555566777888888888887554443
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.3e-07 Score=53.67 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=19.4
Q ss_pred cCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 124 GFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 124 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 112
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=7.8e-05 Score=69.72 Aligned_cols=224 Identities=11% Similarity=0.035 Sum_probs=157.2
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 045105 335 VGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG-SLKHARLAYKRIS---TPDLVSQNAMLTAYAM 410 (601)
Q Consensus 335 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~ 410 (601)
+..+-..+...+..++|......+++.... +..+++.--..+...| +++++...++++. ..+...|+.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 334444556677889999999988876432 3334444444555666 5789999998876 3455567766656666
Q ss_pred cCCh--hhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc---CCh-
Q 045105 411 HGHG--KEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA---GEL- 484 (601)
Q Consensus 411 ~~~~--~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 484 (601)
.|+. ++++.+++++++.. +-|..+|.....++...|+++++++.++.+.+.+. -+...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccccc
Confidence 6653 67899999998853 34556888888888889999999999977777653 3455666665555444 222
Q ss_pred ---HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-------
Q 045105 485 ---GEAYEFIKK-IPMAP-DSVMWGALLGGCVSH----GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG------- 548 (601)
Q Consensus 485 ---~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 548 (601)
++++++..+ +...| |...|+.+...+... +...+|.+.+.++.+.+|+++.++..|+.+|+...
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~ 276 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFR 276 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhh
Confidence 456666644 45566 677888888888763 34567889999998999999999999999998642
Q ss_pred -----------CHHHHHHHHHHHh
Q 045105 549 -----------RWSDLARTRQKMK 561 (601)
Q Consensus 549 -----------~~~~A~~~l~~~~ 561 (601)
..++|.++++.+.
T Consensus 277 ~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 277 DTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhccccccccHHHHHHHHHHHH
Confidence 2366777777773
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=1.8e-05 Score=68.43 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
..+-..+...|+-+....+....... -.-|.......+....+.|++..|...++.... .-++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHc
Confidence 44455566666666666666654432 122333444566666777777777777765433 3366677777777777777
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
|+.++|..-+.+. .+.| ++...+.+...+.-.||.+.|...+..+....+.+..+-..|+.+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777666655 3344 455666677777777777777777777777766677777777777777777777777643
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=3.1e-05 Score=66.95 Aligned_cols=121 Identities=14% Similarity=0.023 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
.+..+....+.|++..|+..+++..... ++|...|+.+.-+|.+.|+.+.|..-|....+.. .-++..++.+.-.|.-
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L 180 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHH
Confidence 3334444444555555555555544432 3344444444445555555555554443322221 1122233444444444
Q ss_pred cCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 481 AGELGEAYEFIKKIPM--APDSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 481 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
.|+.+.|..++...-. ..|..+-..+.......|+++.|+.+.
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 4555555554444411 113444444444444445544444443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=1.1e-05 Score=79.40 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=92.9
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 364 DSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 364 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
+|--..-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..++ +|++.-|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 333444455566666677777777777653 34555566777777777777766666662 66666666666665
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...--+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 5555556666555321111 0011111122234444444444322 2222 33444444444444444444444
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.|.....++|++...++++..+|.+.|+-.+|...+++..+-
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 444444444444444444444444444444444444444433
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.42 E-value=0.0009 Score=60.20 Aligned_cols=157 Identities=8% Similarity=0.037 Sum_probs=80.5
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH---HHHHhcCCcchHHHHHHHHHHhcCCCchHH-HH
Q 045105 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL---PACARLQKLSLGKEFHGYITRNGFMSNPFV-VN 133 (601)
Q Consensus 58 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~ 133 (601)
++.-.--+...+...|++..|+.-|....+- .| ..|.++. ..|...|+...|+.-+...++. +||-.. -.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--Cc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444444556666667777777777666542 23 2333333 3455566666666666666553 444321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCc--h----------------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCe
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFSIKNE--V----------------SCNTIIVGYCENGNVAEARELFDQMEHLGVQRGI 195 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 195 (601)
.-...+.+.|.++.|..-|+.+...++ . .....+..+.-.|+...|++....+.+.. +-|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 223445667777777777766652211 0 01122333444555555555555555433 2344
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHH
Q 045105 196 ISWNSMISGYVDNSLYDEAFSMFRDL 221 (601)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~~ 221 (601)
..|..-..+|...|.+..|+.=++..
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45555555555555555555544443
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.0034 Score=64.03 Aligned_cols=541 Identities=13% Similarity=0.036 Sum_probs=281.1
Q ss_pred CCCchhHHHHHhhCCCCCc-cchHHHHHHH--HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPERDC-VSWNSVVTAC--AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~-~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
++++.+|.....++.++.+ ..|...+.++ .+.|+.++|..+++..... ...|..|...+-.+|...+..++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 5678888888888886444 3566677765 6689999999999987764 334888999999999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----------HHHHHHH
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD----------MLSALKI 151 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------~~~a~~~ 151 (601)
|++..+. -|+..-...+..++.+.+++.+-.++-=++-+. ++-+...+=++++.+..... ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999865 678878888888999988877666554444442 34455555555555544211 2234444
Q ss_pred HhhcCCCC--chh---HHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 045105 152 FSKFSIKN--EVS---CNTIIVGYCENGNVAEARELFDQM-EHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRD 225 (601)
Q Consensus 152 ~~~~~~~~--~~~---~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 225 (601)
++.+.+.+ ..+ ...-...+-..|++++|.+++..- -..-...+...-+.-+..+...++|.+..++-.++.. .
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~-k 255 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE-K 255 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH-h
Confidence 44444332 111 222334456678899999988443 3332223333444566777888899998888888876 3
Q ss_pred CCCCChhhHHHHHHHh----------------cccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH---hcCCHHHHH
Q 045105 226 GIEPTSFTFGSVLIAC----------------ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYC---RYQDLVAAQ 286 (601)
Q Consensus 226 ~~~p~~~~~~~ll~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~ 286 (601)
| +|. |...+... ...+.++...+......... ....|-+-+.++. .-|+.+++.
T Consensus 256 ~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 256 G--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred C--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHH
Confidence 3 232 32222211 11122222222222222221 1111222222222 335555544
Q ss_pred HHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCC-chhhHHHHHHHHH------
Q 045105 287 MAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLA-TMERGKQVHAYAI------ 359 (601)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~------ 359 (601)
..|-. -+..++- +..|...| -..-+..-...++..+.... +.....+++..-.
T Consensus 329 ~~y~~------kfg~kpc--c~~Dl~~y------------l~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~ 388 (932)
T KOG2053|consen 329 SYYFK------KFGDKPC--CAIDLNHY------------LGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLL 388 (932)
T ss_pred HHHHH------HhCCCcH--hHhhHHHh------------hccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHH
Confidence 33220 0001110 00011000 00001111122222222211 1111111111100
Q ss_pred -HhC--CCCchhHHh----HHHHHHHhcCChHHHHHHHhcCCCCCh---------hhHHHHHHHHHHcCChh---hHHHH
Q 045105 360 -RCG--YDSDVHIGT----ALVDMYAKCGSLKHARLAYKRISTPDL---------VSQNAMLTAYAMHGHGK---EGIAH 420 (601)
Q Consensus 360 -~~~--~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~ll~~~~~~~~~~---~a~~~ 420 (601)
-.| ...+..... .++..|++. ..+=+... |+. -+-+.|+..+-+.++.. +|+-+
T Consensus 389 rl~G~~~~l~ad~i~a~~~kl~~~ye~g------ls~~K~ll-~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 389 RLLGLYEKLPADSILAYVRKLKLTYEKG------LSLSKDLL-PTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHhhccccCChHHHHHHHHHHHHHHhcc------cccccccc-ccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 001 011111111 111111111 00000000 111 23567778888887755 45555
Q ss_pred HHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--C-C
Q 045105 421 FRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--M-A 497 (601)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~ 497 (601)
++.-.... +-|..+-..+|+.|+-.|-+..|..+|..+.-..+.-|..-|. +..-+...|++..+...++..- . .
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 55555432 3344566678899999999999999998877777777765543 4456667788888877776541 0 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcce
Q 045105 498 PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSW 573 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 573 (601)
--..+-..+..|| +.|.+.+..++..-=..+.-. -..+-......++..++.+.-...+..|...-.....++..
T Consensus 540 ~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~~ 618 (932)
T KOG2053|consen 540 SLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWVS 618 (932)
T ss_pred hhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhccccc
Confidence 1111222233344 456666665554433333211 12233445666677888888888888776322222233222
Q ss_pred EEeCCceeeeecCCC
Q 045105 574 IEDRDEIHKFRASDR 588 (601)
Q Consensus 574 ~~~~~~~~~~~~~~~ 588 (601)
.......+.+..-+-
T Consensus 619 L~DNRDl~~~~~w~p 633 (932)
T KOG2053|consen 619 LSDNRDLNAIPYWDP 633 (932)
T ss_pred ccccccccccccCCC
Confidence 223455665544333
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=4e-06 Score=67.32 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
...-.+...+...|++++|.++|+-+ ...| +..-|-.|...|-..|++++|+..|.++..++|++|..+.+++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445666678999999999999988 3456 666778888888889999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|+.+.|++-|+.....-
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999776443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=3.3e-05 Score=67.05 Aligned_cols=154 Identities=10% Similarity=0.151 Sum_probs=114.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHH
Q 045105 374 VDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGS 453 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 453 (601)
+..|...|+++.+....+.+..+. ..|...++.++++..++..++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777888777655543333221 01223566788888888888763 556678999999999999999999
Q ss_pred HHHHHHHhcCCCcCchHHHHHHHHh-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 454 EFFDLMAYYDVKPSLKHYTCMVDLL-SRAGE--LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
..++...... +-+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.+
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9997665544 34566777777764 67777 59999999988 4456 667888888889999999999999999999
Q ss_pred cCCCCCchH
Q 045105 529 LEPNNTGNY 537 (601)
Q Consensus 529 ~~p~~~~~~ 537 (601)
..|.+..-+
T Consensus 173 l~~~~~~r~ 181 (198)
T PRK10370 173 LNSPRVNRT 181 (198)
T ss_pred hCCCCccHH
Confidence 988766544
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=6.1e-05 Score=74.34 Aligned_cols=209 Identities=9% Similarity=0.020 Sum_probs=124.3
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChh
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~ 415 (601)
+...+.+.|-...|..+++.+. .+..++.+|...|+..+|..+..... +|+...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 3344444555555555554322 34455666666666666655554333 455566666655555555556
Q ss_pred hHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHH-HHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDL-MAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+|.++.+..-.. .-..+.....+.++++++.+.|+. +.-. +....+|-.+..+..+.++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 666665543322 111111222345677777777733 3222 223446666666667777777777777655
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 495 -PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 495 -~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
...| +...|+.+-.+|.+.|+..+|...++++.+-+-++..++.+..-+..+-|.|++|.+.+.++.+..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 3455 455677777777777777777777777777776677777777777777777777777777765443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=8.7e-05 Score=76.76 Aligned_cols=175 Identities=12% Similarity=0.043 Sum_probs=111.3
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHH
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM 474 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 474 (601)
.+...+-.|.....+.|+.++|..+++...+ +.|+.. ....+..++.+.+++++|....+...... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3456666777777777888888888888777 466654 55566677777888888887776654432 3334556666
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 475 VDLLSRAGELGEAYEFIKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
..++.+.|++++|..+|+++- ..| +...+..+..++...|+.++|...|+++.+...+-...|..++ ++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence 777777888888888887773 234 3567777777777778888888888888777543433333332 33333
Q ss_pred HHHHHHHHhhcCCccCCCcceEEeCCc
Q 045105 553 LARTRQKMKDRRMHKSPGCSWIEDRDE 579 (601)
Q Consensus 553 A~~~l~~~~~~~~~~~~~~~~~~~~~~ 579 (601)
-..+++++.-.+.......+.+.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKM 261 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHH
Confidence 445556555445444444444444433
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=3.4e-05 Score=73.99 Aligned_cols=212 Identities=18% Similarity=0.189 Sum_probs=115.3
Q ss_pred CCCCCchhHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHH
Q 045105 3 GKCGSLDDAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAI 79 (601)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 79 (601)
.+.|++.+|.-+|+...+. +..+|..|.......++-..|+..+++..+ ..+-|....-.|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 3556677777777766643 334666666666666666667777777666 45566666666777777777777777
Q ss_pred HHHHHHHHcCCCCCHhhHHHHH---------HHHHhcCCcchHHHHHHHHH-HhcCCCchHHHHHHHHHHHhcCCHHHHH
Q 045105 80 GMLFRMQAEGLEPNARTLSSVL---------PACARLQKLSLGKEFHGYIT-RNGFMSNPFVVNGLVDVYRRCGDMLSAL 149 (601)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll---------~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 149 (601)
+++....... |.-. |...- ..+.....+....++|-++. ..+..+|+.+...|--.|.-.|++++|.
T Consensus 374 ~~L~~Wi~~~--p~y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhC--ccch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7776665431 1000 00000 00111111222233333332 3333355666666666666666666666
Q ss_pred HHHhhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-eeehHHHHHHHHhCCChhHHHHHHHHH
Q 045105 150 KIFSKFS--IK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRG-IISWNSMISGYVDNSLYDEAFSMFRDL 221 (601)
Q Consensus 150 ~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 221 (601)
..|+... .| |...||-|...++...+.++|+..|.+.++. .|+ +.+..-|.-.|...|.+++|.+.|-..
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 6666554 22 4555666666666666666666666666554 232 333333555556666666666555443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00016 Score=74.83 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=92.2
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCC-hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHH
Q 045105 363 YDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPD-LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLS 438 (601)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ 438 (601)
.+.++..+..|.....+.|.+++|..+++... .|+ ......+...+.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 34456677777777788888888888888776 233 345566777778888888888888888775 4544 45566
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+..++...|++++|..+|+.....+ +-+..++..+..++.+.|+.++|...|++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677778888888888886666522 333567777777888888888888888776
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=8.2e-05 Score=78.59 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=117.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCC--------CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIST--------PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISF 436 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~ 436 (601)
+...|-..|......++.++|+++++++.+ .-...|.++++.-...|.-+...++|+++.+- .|+ ..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 445555666666666667776666666542 11234555555555556566666666666652 233 346
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD---SVMWGALLGGCVS 512 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~ 512 (601)
..|...|.+.+++++|.++++.|.+. +.-...+|..++..+.+..+.++|..++.++ ..-|. .....-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66666677777777777777444432 2244556666666676666666666666655 22222 2233334444456
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
.||.+++..+|+....-.|...-.|..++..-.+.|..+.++.+|++....+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 677777777777777777766666666666666677777777777666655543
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=1.2e-05 Score=65.64 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=69.4
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
.....+...+...|++++|.+.++++ ...| +...|..+...+...|+++.|...++++.+..|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34455566667777777777777766 2234 556666777777777888888888888888888777788888888888
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 888888888887776655
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00049 Score=65.15 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=62.7
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...|+++.|+..++.+... .+-|+..+....+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3455666666666443332 2333444445556666666666666666665 33454 4455555566666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
.++.....+|+++..|..|+.+|...|+..+|..
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 6666666666666666666666655444444333
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00012 Score=63.45 Aligned_cols=150 Identities=10% Similarity=0.131 Sum_probs=99.1
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh----hc
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS----RA 481 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 481 (601)
..|++.|++++|+...+... ..+.... =...+.+..+.+-|.+.++.|.+.. +-.|.+.|..++. -.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 44777788888887776521 2222222 2334456677778888877776632 3445565555554 34
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH-HHHH
Q 045105 482 GELGEAYEFIKKIP--MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA-RTRQ 558 (601)
Q Consensus 482 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~l~ 558 (601)
+...+|.-+|+++. ..|+..+.+.....+...|++++|+.+++.+...+|++|.++..++-+-...|+-.++. +.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 46788888888883 45677777777777778888888888888888888888888888777777777765543 3455
Q ss_pred HHhhcC
Q 045105 559 KMKDRR 564 (601)
Q Consensus 559 ~~~~~~ 564 (601)
+++...
T Consensus 267 QLk~~~ 272 (299)
T KOG3081|consen 267 QLKLSH 272 (299)
T ss_pred HHHhcC
Confidence 555444
No 128
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.0001 Score=68.93 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=135.7
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcC-ChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch--
Q 045105 376 MYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHG-HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI-- 449 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-- 449 (601)
.+...++.++|..+...+.. .+...|+.....+...| ++++++..++++.+.. +-+..+|..-...+.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 34456778888888887763 33445666666666777 5799999999999863 33334566554455556653
Q ss_pred HHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCh----hHHH
Q 045105 450 KTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH---GNL----EFGQ 520 (601)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~----~~a~ 520 (601)
+++..+++.+.+.. +-+..+|+....++.+.|+++++++.++++ ...| |...|+.....+.+. |.. +...
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 66777776666544 445778888888899999999999999988 3344 666777666555444 222 5678
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCc
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAY----AGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~~~ 566 (601)
+...++++.+|+|..++..+..++.. .++..+|.++..+..+.++.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 88889999999999999999999987 34567788888887665543
No 129
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=0.00016 Score=65.49 Aligned_cols=185 Identities=14% Similarity=0.005 Sum_probs=101.4
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh----h
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN-LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR----T 96 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 96 (601)
....+..+...+...|++++|...|+++.......|. ..++..+..++.+.|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 4445666777778888888888888887763211111 245677778888888888888888888765 23222 2
Q ss_pred HHHHHHHHHhc--------CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHH
Q 045105 97 LSSVLPACARL--------QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIV 168 (601)
Q Consensus 97 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 168 (601)
+..+..++... |+.+.|.+.++.+.+... .+......+..... ..... ......+..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~ 174 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRNRL----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHHHH----------HHHHHHHHH
Confidence 33333334332 556667777776665431 11112211111100 00000 000113444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC--CCCeeehHHHHHHHHhCCChhHHHHHHHHHHH
Q 045105 169 GYCENGNVAEARELFDQMEHLGV--QRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 223 (601)
.+.+.|++++|...++....... +.....+..+..++...|++++|..+++.+..
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56666777777777766665421 11234556666677777777777776666543
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=2.8e-05 Score=74.04 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=97.5
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVS 512 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 512 (601)
....|+..+...++++.|..+++.+.+.. |+ ....+++.+...++-.+|++++.+. ...| +...+..-...|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34455666667788888888887766554 43 4455777777777888888888776 2244 56666666677889
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.++++.|.++.+++.+..|++..+|..|+.+|.+.|++++|+-.++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999874
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00051 Score=72.00 Aligned_cols=148 Identities=10% Similarity=0.123 Sum_probs=78.1
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
.+..+..+|-+.|+.++|..+|+++. ..|+...|.+...|+.. +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 34445555555555555555555554 23444555555555555 555555555555442 334
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADR 525 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 525 (601)
.+++..+..+|..+.... +.+...+..+.+..... .+...-..++--+-..|...++++.+..+++.
T Consensus 182 ~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred hhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 445555555554443322 11222222222211111 11122233444455566667778888888888
Q ss_pred HHhcCCCCCchHHHHHHHHH
Q 045105 526 LIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~ 545 (601)
+.+.+|.|..+...++.+|.
T Consensus 249 iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhcCCcchhhHHHHHHHHH
Confidence 88888887777777777776
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00032 Score=66.39 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=106.9
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcC
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAG 482 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 482 (601)
...+...|.+++|+..++.++.. .|+.. -.......+...++.++|.+.++.+... .|+ ....-.+.++|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33455678899999999998875 55554 4555567888899999999999766554 444 445566788899999
Q ss_pred ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 483 ELGEAYEFIKKI--PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 483 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
++.+|+.+++.. ..+-|+..|..|..+|...|+..++... .+..|+..|+|+.|..++...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHH
Confidence 999999998877 2234788899999999999986665544 455677788888888888888
Q ss_pred hhcCCccCC
Q 045105 561 KDRRMHKSP 569 (601)
Q Consensus 561 ~~~~~~~~~ 569 (601)
+++.-.-.|
T Consensus 452 ~~~~~~~~~ 460 (484)
T COG4783 452 SQQVKLGFP 460 (484)
T ss_pred HHhccCCcH
Confidence 776643333
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.16 E-value=0.00046 Score=73.23 Aligned_cols=228 Identities=11% Similarity=-0.005 Sum_probs=162.9
Q ss_pred CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch
Q 045105 55 ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN-----ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP 129 (601)
Q Consensus 55 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 129 (601)
.|-+...|-..|......++.++|.++.++.... +.+. -..|.++++.-...|.-+...++|+++.+.. ..-
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 3445667888888888888888888888888764 2222 1356666666666677777888888887753 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CeeehHHHHHHH
Q 045105 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIK---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQR-GIISWNSMISGY 205 (601)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~ 205 (601)
.+|..|...|.+.+..++|.++|+.|.++ ....|...+..+.++.+-+.|..++.+..+.=.+. -...-...+..-
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 56778888888888888888888888744 45678888888888888888888888877652111 122233344555
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHH
Q 045105 206 VDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSD--TFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 283 (601)
.+.|+.+++..+|+..+. ..+-....|+..++.-.+.|+.+.++.+|+.+...++.+- -+.|...+..=-+.|+-.
T Consensus 1611 Fk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 678888888888888775 2444556788888888888999999999999988887664 356666666666666655
Q ss_pred HHHH
Q 045105 284 AAQM 287 (601)
Q Consensus 284 ~a~~ 287 (601)
.+..
T Consensus 1689 ~vE~ 1692 (1710)
T KOG1070|consen 1689 NVEY 1692 (1710)
T ss_pred hHHH
Confidence 5443
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.2e-06 Score=49.40 Aligned_cols=33 Identities=30% Similarity=0.643 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN 93 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 93 (601)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.6e-06 Score=48.81 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 045105 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEP 92 (601)
Q Consensus 60 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 92 (601)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0014 Score=56.93 Aligned_cols=238 Identities=11% Similarity=0.076 Sum_probs=153.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
++-+--.|++..++..-+..... +-++..--.+-++|...|.+..... +.+... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcch
Confidence 44455567777777766654432 2344444455667777776654332 222221 3333333333333322333
Q ss_pred cc-hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 110 LS-LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 110 ~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
.+ ....+.+++.......+......-...|++.|++++|++.+.. ..+......=+..+.+..+++-|.+.+++|.+
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22 2334555555554444444444555678899999999999988 34555666667778889999999999999986
Q ss_pred cCCCCCeeehHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Q 045105 189 LGVQRGIISWNSMISGYVD----NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQS 264 (601)
Q Consensus 189 ~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (601)
. -+..|.+.|..++.+ .+...+|.-+|++|. ....|+..+.+-...++...+++++|+.+++.........
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s--~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS--EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh--cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 4 345666766666654 456899999999986 3488999999999999999999999999999999887544
Q ss_pred chhHHHHHHHHHHhcCCH
Q 045105 265 DTFVGGALVEMYCRYQDL 282 (601)
Q Consensus 265 ~~~~~~~li~~~~~~g~~ 282 (601)
.....|.++.+ ...|..
T Consensus 241 petL~Nliv~a-~~~Gkd 257 (299)
T KOG3081|consen 241 PETLANLIVLA-LHLGKD 257 (299)
T ss_pred HHHHHHHHHHH-HHhCCC
Confidence 33334444443 344443
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=0.0006 Score=71.50 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=91.4
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH------
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA------ 94 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------ 94 (601)
.+...+..|+..+...+++++|.++.+...+ ..|-....|-.+...+.+.++.+.+..+ .+... +..+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 3456788999999999999999999997776 3333444455555566677766665554 32221 11111
Q ss_pred -------------hhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch
Q 045105 95 -------------RTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV 161 (601)
Q Consensus 95 -------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 161 (601)
..+..+..+|.+.|+.+++..+++++++.. +-|+.+.|.+.-.|... +.++|.+++.+..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV----- 176 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI----- 176 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----
Confidence 345555556666666666666666666665 44566666666666666 6666666655433
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
..+...+++.++.++|.++..
T Consensus 177 ------~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 177 ------YRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred ------HHHHhhhcchHHHHHHHHHHh
Confidence 224444455555555555543
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=6.1e-06 Score=48.69 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD 432 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (601)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00095 Score=57.55 Aligned_cols=197 Identities=13% Similarity=0.153 Sum_probs=134.8
Q ss_pred CCchhhHHHHHHHHHHh---C-CCCchh-HHhHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHHHHHcCChhh
Q 045105 345 LATMERGKQVHAYAIRC---G-YDSDVH-IGTALVDMYAKCGSLKHARLAYKRIST--PDLV-SQNAMLTAYAMHGHGKE 416 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~ 416 (601)
..+.++..+++..+... | ..++.. +|..++-+...+|+.+.|..+++.+.. |... .-..-..-+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34566666666665532 3 344433 344566666778888888888877652 2211 11111122445689999
Q ss_pred HHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 045105 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P 495 (601)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (601)
|+++++.+++.. +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.--++++ -
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999875 55566777666667777888888887744333 36788899999999999999999999999888 3
Q ss_pred CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 496 MAP-DSVMWGALLGGCVSH---GNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 496 ~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
..| ++..+..+...+.-. .+.+.+.+.|.++.++.|.+...+..+..+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 455 666777777665433 367888999999999988666655554433
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=0.00013 Score=59.54 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=84.1
Q ss_pred HHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC
Q 045105 420 HFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA 497 (601)
Q Consensus 420 ~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 497 (601)
.+++... ..|+. .....+...+...|++++|...++.....+ +.+...+..+..++.+.|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 34543 345566677788889999998887765544 445677788888888899999999888876 334
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 498 P-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 498 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
| +...+..+...+...|+++.|...++++.+..|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 5667777778888899999999999999999986654
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.06 E-value=5.3e-06 Score=60.86 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=60.2
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PMAP---DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLART 556 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 556 (601)
.|++++|+.+++++ ...| +...+-.+...|.+.|++++|.+++++ .+.+|.++.....++.++.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888887 2223 445566678888899999999999988 777777777777889999999999999998
Q ss_pred HHH
Q 045105 557 RQK 559 (601)
Q Consensus 557 l~~ 559 (601)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=5.6e-05 Score=60.04 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=66.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLA 541 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 541 (601)
++..+...+.+.|++++|.+.|+++ ...|+ ...+..+...+...|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666677777777777777766 22232 2345556677777788888888888888777764 44677777
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++.+.|++++|.+.++++.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 788888888888888887777653
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.04 E-value=1.2e-05 Score=55.53 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=53.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+...+...|++++|.+.++++.+..|+++..+..++.++.+.|++++|...++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788899999999999999999999999999999999999999999999999887653
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=1.4e-05 Score=56.04 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-CHHHHHHHHHHHhhcC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG-RWSDLARTRQKMKDRR 564 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~l~~~~~~~ 564 (601)
+..+|..+...+...|++++|+..++++++.+|+++.++..++.++...| ++++|.+.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999999999999999999999999999 7999999999876644
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=9.4e-06 Score=47.44 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP 431 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (601)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=6.3e-05 Score=56.87 Aligned_cols=94 Identities=19% Similarity=0.318 Sum_probs=77.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
+..+...+...|++++|...++++ ...| +...+..+...+...|+++.|.+.++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778889999999998876 3344 44667777888888899999999999999999988889999999999999
Q ss_pred CHHHHHHHHHHHhhcC
Q 045105 549 RWSDLARTRQKMKDRR 564 (601)
Q Consensus 549 ~~~~A~~~l~~~~~~~ 564 (601)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876544
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00082 Score=57.92 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHH-HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSA-LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL 478 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 478 (601)
.|..++-+....|+.+.|..+++++... + |.+.-...+ .--+...|.+++|+++++...... +.|..++.--+-..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 4556667777889999999999999887 3 554322222 223456889999999997766655 55666777666667
Q ss_pred hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC---CHHHH
Q 045105 479 SRAGELGEAYEFIKKI--PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG---RWSDL 553 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 553 (601)
-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.++++.=..|.++..+..++.++.-.| ++.-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888888877666 345689999999999999999999999999999999999999999999887665 56778
Q ss_pred HHHHHHHhhcCCccC
Q 045105 554 ARTRQKMKDRRMHKS 568 (601)
Q Consensus 554 ~~~l~~~~~~~~~~~ 568 (601)
++++.+..+...+..
T Consensus 211 rkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 211 RKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHhChHhH
Confidence 888888777665333
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00019 Score=68.47 Aligned_cols=127 Identities=10% Similarity=0.094 Sum_probs=98.3
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCc
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGS 448 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 448 (601)
...+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.+... +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566667778888889999988887666666778888888888889999999988752 3355566666777889999
Q ss_pred hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 045105 449 IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497 (601)
Q Consensus 449 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (601)
++.|+.+.+...... +-+..+|..|..+|...|++++|+-.++.++..
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999997655532 334568999999999999999999999888643
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0001 Score=65.60 Aligned_cols=108 Identities=14% Similarity=0.096 Sum_probs=93.6
Q ss_pred CcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCCchHHH
Q 045105 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSH---GNLEFGQIAADRLIELEPNNTGNYVM 539 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (601)
+-|...|-.|...|...|+...|..-|.+. .+. +++..+..+..++..+ .+..++.++++++...+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567889999999999999999999999887 334 4677777777776543 35789999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcc
Q 045105 540 LANLFAYAGRWSDLARTRQKMKDRRMHKSPGCS 572 (601)
Q Consensus 540 l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 572 (601)
|+..++..|++.+|...|+.|.+..+.-+|+.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999999987777644
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00043 Score=56.99 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=47.1
Q ss_pred cCChhhHHHHHHHHHHCCCCccHH---hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCc--hHHHHHHHHhhhcCChH
Q 045105 411 HGHGKEGIAHFRRILASGFRPDHI---SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSL--KHYTCMVDLLSRAGELG 485 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 485 (601)
.++...+...++.+.+.. +.+.. ....+...+...|++++|...|+.+......|+. ...-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555555532 11111 2222334445555555555555444443322211 12222344444555555
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045105 486 EAYEFIKKIPMA-PDSVMWGALLGGCVSHGNLEFGQIAADR 525 (601)
Q Consensus 486 ~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 525 (601)
+|+..++..... .....+......+.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443211 1222333333444444444444444443
No 151
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.88 E-value=0.025 Score=53.47 Aligned_cols=452 Identities=13% Similarity=0.061 Sum_probs=227.8
Q ss_pred CCCCchhHHHHHhhCCC---CCcc------chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHH--hhc
Q 045105 4 KCGSLDDAKKVFKMMPE---RDCV------SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGF--TQN 72 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~------~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~--~~~ 72 (601)
+++++.+|+++|.++-+ .+++ .-+.++++|-. ++.+.....+..+.+..+ ...|-.+..++ -+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG----KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHh
Confidence 56889999999999874 2322 23456666655 456666666666665322 23344444433 367
Q ss_pred CChHHHHHHHHHHHHc--CCCCC------------HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCC----CchHHHHH
Q 045105 73 GYDEEAIGMLFRMQAE--GLEPN------------ARTLSSVLPACARLQKLSLGKEFHGYITRNGFM----SNPFVVNG 134 (601)
Q Consensus 73 ~~~~~a~~~~~~m~~~--~~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ 134 (601)
+.+++|.+.+....++ +..|. -.-=+..+.++...|++.++..+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8888998888877665 32221 111234556677888888888888877755433 67778877
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC-
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSI---KNE-VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS- 209 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~- 209 (601)
++-.+++. .|-++.+ -|. .-|--++..|.+.=+. ++.-.-..+-|.......++....-..
T Consensus 173 ~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 173 AVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred HHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 66655553 1211110 011 1233333333322111 111001112333333444444333221
Q ss_pred -ChhHHHHHHHHHHHcCCCCCChhhH-HHHHHHhcccCCHHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHH
Q 045105 210 -LYDEAFSMFRDLLMRDGIEPTSFTF-GSVLIACADMNSLRKGKEIHALAIALGLQS----DTFVGGALVEMYCRYQDLV 283 (601)
Q Consensus 210 -~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 283 (601)
+..--+++++.-.. .-+.|+.... ..+...+.+ +.+.+..+.+.+....+.+ =..++..++....+.++..
T Consensus 239 e~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 239 ERLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred hhccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22222333333222 5566664432 223333333 5555555555554443221 1345667777778888888
Q ss_pred HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHH-HhcCCCchhhHHHHHHHHHHhC
Q 045105 284 AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS-ACSSLATMERGKQVHAYAIRCG 362 (601)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~ 362 (601)
.|.+.+.-+. .. .|+..... ..-.+..++..++. -=....++..=..+|.......
T Consensus 316 ~a~q~l~lL~--------~l----dp~~svs~-----------Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D 372 (549)
T PF07079_consen 316 EAKQYLALLK--------IL----DPRISVSE-----------KLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD 372 (549)
T ss_pred HHHHHHHHHH--------hc----CCcchhhh-----------hhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence 8877776221 11 22222110 00011111111110 0000011222233444444333
Q ss_pred CCCchhHHhHHH---HHHHhcCC-hHHHHHHHhcCCC---CChhhHHHHH----HHHHH---cCChhhHHHHHHHHHHCC
Q 045105 363 YDSDVHIGTALV---DMYAKCGS-LKHARLAYKRIST---PDLVSQNAML----TAYAM---HGHGKEGIAHFRRILASG 428 (601)
Q Consensus 363 ~~~~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~ll----~~~~~---~~~~~~a~~~~~~m~~~~ 428 (601)
+.. .....-|+ .-+-+.|. -++|..+++.+.+ -|...-|... .+|.+ ...+.+-+.+-+-+.+.|
T Consensus 373 iDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 373 IDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred ccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 321 11111122 22333444 6778888877663 3433333322 22322 233455555556666778
Q ss_pred CCccHHh----HHHHHH--HHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHH
Q 045105 429 FRPDHIS----FLSALS--ACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVM 502 (601)
Q Consensus 429 ~~p~~~~----~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 502 (601)
+.|-.+. -+.|.+ .+...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|.+++..+| |+..+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~ 527 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERM 527 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--Cchhh
Confidence 7774432 333333 24567888887766555443 67899999988888889999999999999986 56665
Q ss_pred HHH
Q 045105 503 WGA 505 (601)
Q Consensus 503 ~~~ 505 (601)
+++
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 554
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00013 Score=70.09 Aligned_cols=107 Identities=10% Similarity=0.093 Sum_probs=86.9
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 517 (601)
...+...|++++|+..|+...... +-+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 455677899999999997666543 334667888889999999999999999888 4455 5677888888999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.|...++++.+++|+++.....+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999888777776664443
No 153
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=2.6e-05 Score=54.54 Aligned_cols=55 Identities=11% Similarity=0.303 Sum_probs=48.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...|++++|.+.++++.+.+|+++.+...++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678999999999999999999999999999999999999999999998876664
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.84 E-value=6.3e-05 Score=53.45 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=54.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...|.+.++++.|.++++++.+.+|+++..+...+.++.+.|++++|.+.+++..+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999987775
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.83 E-value=0.053 Score=55.77 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=148.0
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHH--HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcc
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGG--FTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLS 111 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 111 (601)
...+++.+|+.....+.+.. ||.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.+
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 45688999999999988753 3332 3334443 46899999999999988876544 8889999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH----HHHHHHhhcCCCCchhHHHHHHHHHhcC-C---------HH
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML----SALKIFSKFSIKNEVSCNTIIVGYCENG-N---------VA 177 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~ 177 (601)
++..+|+..... .|+......+..+|.+.+++. .|+++++..+. +...|-+++....+.- . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999875 566888888889999987764 45666665543 4444444444443321 1 23
Q ss_pred HHHHHHHHHHhcCCCC-CeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 178 EARELFDQMEHLGVQR-GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 178 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
-|.+.++.+...+-+. +..-...-...+...|.+++|++++..-..+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4556666666543111 111122223445667889999999943333233333444445566777788888888888888
Q ss_pred HHHcCC
Q 045105 257 AIALGL 262 (601)
Q Consensus 257 ~~~~~~ 262 (601)
+...|.
T Consensus 252 Ll~k~~ 257 (932)
T KOG2053|consen 252 LLEKGN 257 (932)
T ss_pred HHHhCC
Confidence 887763
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.0012 Score=54.41 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch--HHHHHHHHHHHhcCCHH
Q 045105 72 NGYDEEAIGMLFRMQAEGLEPN---ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP--FVVNGLVDVYRRCGDML 146 (601)
Q Consensus 72 ~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~ 146 (601)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++. .....|..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 666666666666666642 112 122223335556667777777777777665522221 23334556666667777
Q ss_pred HHHHHHhhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 045105 147 SALKIFSKFSIK--NEVSCNTIIVGYCENGNVAEARELFDQ 185 (601)
Q Consensus 147 ~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 185 (601)
+|+..++....+ ....+......+.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777766654422 222344455555566666666655543
No 157
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.78 E-value=0.0047 Score=50.62 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=96.3
Q ss_pred CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CCC---CHHHHH
Q 045105 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MAP---DSVMWG 504 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~ 504 (601)
..|....-..|..++...|+..+|...|.....--+.-|....-.+.++....+++.+|...++++. ..| ++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3566665666777888888888888888665554455666677777788888888888888887762 222 233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.+.+.+...|.++.|+..++.+....| ++......+.-+.++|+.++|..-+.+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 667778888888888888888888888 666666677778888888887776555543
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.78 E-value=0.00028 Score=52.49 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=53.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcC--------CcchHHHHHHHHHHhcCCCchHHHHH
Q 045105 64 AVIGGFTQNGYDEEAIGMLFRMQAEGL-EPNARTLSSVLPACARLQ--------KLSLGKEFHGYITRNGFMSNPFVVNG 134 (601)
Q Consensus 64 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 134 (601)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566777777777777777777 777777777777766542 23345567777777777777777777
Q ss_pred HHHHHHh
Q 045105 135 LVDVYRR 141 (601)
Q Consensus 135 l~~~~~~ 141 (601)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766544
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.78 E-value=0.042 Score=53.19 Aligned_cols=159 Identities=10% Similarity=0.102 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHH-HHhcCCCcCchHHHHHHH
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDL-MAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~ 476 (601)
.+|-.+|+.-.+..-...|..+|.+..+.+..+ +...+++++..+|. ++...|.++|+. ++..| -++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 467778888888888999999999999998888 56688888887774 788999999954 34433 33444567788
Q ss_pred HhhhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----CchHHHHHHHHHHc
Q 045105 477 LLSRAGELGEAYEFIKKIP---MAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN----TGNYVMLANLFAYA 547 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 547 (601)
.+...++-..|..+|++.. +.| ...+|..++.--..-||...+.++-++.....|.+ -..-..+++-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 8889999999999999882 233 35789999999999999999999999988877722 12334455555555
Q ss_pred CCHHHHHHHHHHH
Q 045105 548 GRWSDLARTRQKM 560 (601)
Q Consensus 548 g~~~~A~~~l~~~ 560 (601)
+.+..-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 5554444433333
No 160
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=0.00042 Score=66.52 Aligned_cols=120 Identities=9% Similarity=0.160 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 045105 159 NEVSCNTIIVGYCENGNVAEARELFDQMEHL--GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236 (601)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 236 (601)
+......+++.+....+++.+..++...... ....-..|.+++++.|.+.|..+.++.+++.=.. .|+-||.++++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHH
Confidence 3444555566666666666666666666543 2223344556777778888777888877777665 777788888888
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 045105 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY 279 (601)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (601)
+|..+.+.|++..|.++...|..++...+..++..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888777777777776666666665555555554
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00046 Score=54.67 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=65.8
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCC-c-CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVK-P-SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALL 507 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~ 507 (601)
++..+...+.+.|++++|...+..+...... + ....+..+..++.+.|++++|.+.++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666677777777777554443211 1 1234555677777777777777777765 22233 34566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
..+...|+.+.|...++++.+..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888887655443
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.76 E-value=0.039 Score=52.20 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 489 EFIKKIPMAP----DSVMWGALLGG--CVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 489 ~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
..+++.|+.| +...-+.|..| +..+|++.++.-.-.-+.+..| .+.+|..++-++....++++|..++..+
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3445555443 33455566665 4578999999888888888999 8999999999999999999999998764
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.039 Score=51.71 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
.+..+.-+...|+...|..+-.+.. -|+..-|..-+.+++..++|++-.++-.. +-++.-|..+++++.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444555555555555444431 35555555556666666666555544221 1123445555666666
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 045105 481 AGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIA 522 (601)
Q Consensus 481 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 522 (601)
.|+..+|..++.+++ +..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHH
Confidence 666666666665532 12233445555555555444
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.2e-05 Score=43.46 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=19.7
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEG 89 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 89 (601)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666777777777777777777666655
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00012 Score=64.84 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=81.7
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 045105 441 SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 518 (601)
.-+.+.+++.+|+..|....... +-|...|..-..+|.+.|.++.|++-.+.. .+.| -...|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45678899999999997766543 344556666778899999999999988877 5666 46789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 519 GQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
|++.|+++++++|++......|-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999888544444443
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00025 Score=52.74 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCeeehHHHHHHHHhCC--------ChhHHHHHHHHHHHcCCCCCChhhH
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGV-QRGIISWNSMISGYVDNS--------LYDEAFSMFRDLLMRDGIEPTSFTF 234 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~p~~~~~ 234 (601)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+. .+++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHH
Confidence 3445556666888888888888888888 788888888887766543 23356677777776 6677777777
Q ss_pred HHHHHHhc
Q 045105 235 GSVLIACA 242 (601)
Q Consensus 235 ~~ll~~~~ 242 (601)
+.++..+.
T Consensus 108 nivl~~Ll 115 (120)
T PF08579_consen 108 NIVLGSLL 115 (120)
T ss_pred HHHHHHHH
Confidence 77776543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0005 Score=58.62 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
.+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|...++++.+..|+++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555666667777777777777765 22222 356777778888889999999999999999998888888888888
Q ss_pred HHcCC--------------HHHHHHHHHHHhhcC
Q 045105 545 AYAGR--------------WSDLARTRQKMKDRR 564 (601)
Q Consensus 545 ~~~g~--------------~~~A~~~l~~~~~~~ 564 (601)
...|+ +++|.+++++....+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 88776 466666666665544
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=6.5e-05 Score=42.66 Aligned_cols=29 Identities=45% Similarity=0.879 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEHLG 190 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (601)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00064 Score=65.29 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=54.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNE-TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
...+++.+....+.+.+..++-..+..... ..-..|.+++|+.|...|..+.+++++..=...|+-||..+++.|+..+
T Consensus 69 ld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 69 LDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 333444444444444455544444432111 1112333455555555555555555555555555555555555555555
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 149 l~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555544444444444444443333
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00071 Score=60.03 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=80.5
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCC
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGE 483 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 483 (601)
.-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+..... .|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 4477889999999999999995 55 4566777788999999999999988665443 333 5688999999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 045105 484 LGEAYEFIKKI-PMAPDSVMWGALLGG 509 (601)
Q Consensus 484 ~~~A~~~~~~~-~~~~~~~~~~~l~~~ 509 (601)
+++|++.|++. .+.|+..+|..=+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999887 788987777654444
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0011 Score=63.61 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=79.0
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++...... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455677899999999999999863 3345678888889999999999999997766643 33566788888999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Q 045105 485 GEAYEFIKKI-PMAPDSVMWGALL 507 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~~~~~~~~l~ 507 (601)
++|+..|++. .+.|+.......+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999887 4566655544444
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.56 E-value=0.00022 Score=49.19 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=49.9
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+...+.+.|++++|++.|+++ ...| +...|..+...+...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999988 4456 567788888889999999999999999999999764
No 173
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0042 Score=53.93 Aligned_cols=134 Identities=9% Similarity=0.085 Sum_probs=82.3
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHH
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP--------MAPDSVMWGALLG 508 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~ 508 (601)
..++..+.-.|.+.-....+..+.+...+.++.....|++.-...|+.+.|..+|++.+ ..-+..+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444555555666666666555555545555555666666666677666666666431 1112222222333
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCC
Q 045105 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 570 (601)
.|.-++++..|...+.++...+|.++...+.-+-|+.-.|+..+|.+.++.|+++.+++..-
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 34455677777777777777777777777777777777788888888888777777655443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.50 E-value=0.021 Score=53.13 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCC-----ccHH-hHHHHHHHHhccCchHHHHHHHHHHHhc--CCCcC--chH
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFR-----PDHI-SFLSALSACVHAGSIKTGSEFFDLMAYY--DVKPS--LKH 470 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~ 470 (601)
+..+...+.+.|++++|..+|++....... .+.. .|...+-++...|++..|.+.++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 444566677777788888887777654322 1221 2223333455567777777777554432 22222 224
Q ss_pred HHHHHHHhhh--cCChHHHHHHHHhCCCCCCHHHHH
Q 045105 471 YTCMVDLLSR--AGELGEAYEFIKKIPMAPDSVMWG 504 (601)
Q Consensus 471 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~ 504 (601)
...|+.++-. ...+.+++.-|+.+. +.|..--.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~ 272 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTK 272 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHH
Confidence 4555555532 234556666666664 44544333
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.49 E-value=0.0017 Score=55.08 Aligned_cols=113 Identities=13% Similarity=0.194 Sum_probs=53.7
Q ss_pred HHHHhhC--CCCCccchHHHHHHHHh-----cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 045105 12 KKVFKMM--PERDCVSWNSVVTACAA-----NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFR 84 (601)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 84 (601)
.+.|++. ..++-.+|..++..|.+ .|.++-....+..|.+. +...|..+|+.|++.+=+.. +- -..+|+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~-fv-p~n~fQ~ 110 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGK-FV-PRNFFQA 110 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCC-cc-cccHHHH
Confidence 4445554 23555555555555543 24444445555555554 55555566665555544311 10 0000000
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 85 MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+ ...| -.+-+-|.+++++|...|+.||..++..+++.+++.+.
T Consensus 111 ~---------------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 E---------------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred H---------------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0000 01234456666666666666666666666666655443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.47 E-value=0.005 Score=61.92 Aligned_cols=139 Identities=15% Similarity=0.085 Sum_probs=74.1
Q ss_pred CCCChhhHHHHHHHHHHc-----CChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccC--------chHHHHHHHHHH
Q 045105 394 STPDLVSQNAMLTAYAMH-----GHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAG--------SIKTGSEFFDLM 459 (601)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g--------~~~~a~~~~~~~ 459 (601)
...+...|...+.+.... +....|..+|++.++. .|+. ..|..+..++.... +...+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356777888887775432 2366889999999884 6664 34444433332111 111222222111
Q ss_pred Hhc-CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 460 AYY-DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 460 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
... ..+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 111 12223344555544444556666666666655 3455555555566666666666666666666666666444
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0011 Score=56.30 Aligned_cols=93 Identities=14% Similarity=-0.076 Sum_probs=72.0
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
...|..+...+...|++++|+..|++. ...|+ ..+|..+...+...|++++|.+.++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 345566667777788888888888776 22222 3478888888999999999999999999999988888888888
Q ss_pred HHH-------HcCCHHHHHHHHHHH
Q 045105 543 LFA-------YAGRWSDLARTRQKM 560 (601)
Q Consensus 543 ~~~-------~~g~~~~A~~~l~~~ 560 (601)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666665543
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.0031 Score=53.73 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc--HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHH
Q 045105 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD--HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM 474 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 474 (601)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+....... +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566777778888888888888888876533322 2466777777888888888888885544432 2234455556
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 475 VDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
..+|...|+...+..-++.. ...+++|.+.++++.+.+|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666655544332221 123677888888888888866 4455555544443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.45 E-value=0.025 Score=50.94 Aligned_cols=174 Identities=11% Similarity=0.098 Sum_probs=104.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CChh-h---HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH--HhHHHHHHHHh
Q 045105 373 LVDMYAKCGSLKHARLAYKRIST--PDLV-S---QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH--ISFLSALSACV 444 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~ 444 (601)
....+...|++++|...|+.+.. |+.. . .-.+..+|.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445567888888888888763 3222 1 134556778888888888888888875 3433 23434444433
Q ss_pred c--cC---------------chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 045105 445 H--AG---------------SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALL 507 (601)
Q Consensus 445 ~--~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 507 (601)
. .+ +...+.+.+ ..+..+++-|-...-..+|...+..+....-...+ .+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~-~ia 182 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF------------RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL-SVA 182 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH------------HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 10 111111111 12233444444444445554444433211111111 345
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.-|.+.|.+..|..-++.+++..|+.+ .++..+..+|...|..++|.+++..+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 568889999999999999999988744 577788899999999999999876553
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.43 E-value=0.0016 Score=48.84 Aligned_cols=94 Identities=18% Similarity=0.052 Sum_probs=59.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA 105 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (601)
+..+...+...|++++|...++...+ ..+.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 44556666677777777777777665 233444566667777777777777777777766542 223345555666666
Q ss_pred hcCCcchHHHHHHHHHH
Q 045105 106 RLQKLSLGKEFHGYITR 122 (601)
Q Consensus 106 ~~~~~~~a~~~~~~~~~ 122 (601)
..|+++.|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666665544
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.0015 Score=53.03 Aligned_cols=88 Identities=10% Similarity=-0.000 Sum_probs=74.7
Q ss_pred HHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 475 VDLLSRAGELGEAYEFIKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
..-+...|++++|..+|+-+. ..| +..-|..|...|-..+++++|...|..+..++++||....+.+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334568899999999998772 233 566677777778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 045105 553 LARTRQKMKD 562 (601)
Q Consensus 553 A~~~l~~~~~ 562 (601)
|+.-|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999887766
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.42 E-value=0.00014 Score=42.03 Aligned_cols=33 Identities=36% Similarity=0.582 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 523 ADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.41 E-value=0.025 Score=52.61 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=88.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhccc-CCHHHHHHHHHHHHHc----CCC-CchhHHHHHHH
Q 045105 201 MISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADM-NSLRKGKEIHALAIAL----GLQ-SDTFVGGALVE 274 (601)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~ 274 (601)
.+..|...|++..|-.++..+- ..+... |+++.|.+.|++..+. +.+ .-..++..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA----------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA----------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH----------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3455566666666666555443 355566 7888888888776543 211 11345667788
Q ss_pred HHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHH
Q 045105 275 MYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQV 354 (601)
Q Consensus 275 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 354 (601)
.+.+.|++++|..+|+ ++.......+...+++ ...|...+-++...|++..|...
T Consensus 164 l~~~l~~y~~A~~~~e----------~~~~~~l~~~l~~~~~---------------~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYE----------EVAKKCLENNLLKYSA---------------KEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HHHHTT-HHHHHHHHH----------HHHHTCCCHCTTGHHH---------------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHhCCHHHHHHHHH----------HHHHHhhcccccchhH---------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999998 3332221211111111 01222333355556788888888
Q ss_pred HHHHHHh--CCCCc--hhHHhHHHHHHHh--cCChHHHHHHHhcCCCCChhhHHHHH
Q 045105 355 HAYAIRC--GYDSD--VHIGTALVDMYAK--CGSLKHARLAYKRISTPDLVSQNAML 405 (601)
Q Consensus 355 ~~~~~~~--~~~~~--~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~ll 405 (601)
++..... ++..+ -.....|+.++-. ...+.++..-|+.+.+.|..--..|+
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~ 275 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL 275 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 8876644 22222 3444556666644 33466677777777766665444444
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.0029 Score=49.29 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=60.6
Q ss_pred HHHHhhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI---PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN---NTGNYVMLANLFA 545 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 545 (601)
+..++-..|+.++|+.++++. +.... ...+-.+.+.+...|++++|..++++..+..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666777777777777765 22221 334556667778888888888888888887776 4555666677788
Q ss_pred HcCCHHHHHHHHHHHh
Q 045105 546 YAGRWSDLARTRQKMK 561 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~ 561 (601)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888888765443
No 185
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.39 E-value=0.00042 Score=50.74 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=46.1
Q ss_pred cCChhhHHHHHHHHHHCCC-CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHH
Q 045105 411 HGHGKEGIAHFRRILASGF-RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYE 489 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 489 (601)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777776532 12333444466777777777777777754 22211 112333345666777777777777
Q ss_pred HHHh
Q 045105 490 FIKK 493 (601)
Q Consensus 490 ~~~~ 493 (601)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.39 E-value=0.00094 Score=56.56 Aligned_cols=88 Identities=13% Similarity=0.235 Sum_probs=58.1
Q ss_pred CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC----------------ChhHHH
Q 045105 157 IKNEVSCNTIIVGYCE-----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNS----------------LYDEAF 215 (601)
Q Consensus 157 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------~~~~a~ 215 (601)
.++-.+|..++..|.+ .|+++=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4455566666666654 5788888888999999999999999999998875421 122345
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccC
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMN 245 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 245 (601)
+++++|.. .|+.||..|+..+++.+.+.+
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 55555554 555555555555555554443
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.0064 Score=56.27 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH-HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 399 VSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA-CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 399 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888887543 2222333333322 22346667789999554443 55667788888888
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 478 LSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+.+..+.+++.+..|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 88999999999999887 22233 358888888888999999999999999988775
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0023 Score=58.01 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=50.5
Q ss_pred hhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHHHHHHHcCCH
Q 045105 479 SRAGELGEAYEFIKKI-PMAPDS----VMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLANLFAYAGRW 550 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 550 (601)
.+.|++++|+..|+.+ ...|+. ..+-.+...|...|+++.|...++.+.+..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4456666666666555 122322 344455566666677777777777776666653 33444556666667777
Q ss_pred HHHHHHHHHHhhcC
Q 045105 551 SDLARTRQKMKDRR 564 (601)
Q Consensus 551 ~~A~~~l~~~~~~~ 564 (601)
++|.+++++..+..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 77777776665554
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.00099 Score=46.39 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=44.1
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
.+.|++++|++.|+.+.+ ..|-+...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 456778888888888777 34557777777888888888888888888887765 5554444443
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.31 Score=48.92 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=63.9
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CchhHHH--------H--HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 045105 126 MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-NEVSCNT--------I--IVGYCENGNVAEARELFDQMEHLGVQRG 194 (601)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--------l--i~~~~~~g~~~~a~~~~~~m~~~g~~~~ 194 (601)
.|.+..|..+.......-+++-|+..|-+...- .+..-.. + ...-+--|.+++|+++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 577778877777766666677777666555421 1100000 0 111223478888888887776443
Q ss_pred eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----hhhHHHHHHHhcccCCHHHHHHHH
Q 045105 195 IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT----SFTFGSVLIACADMNSLRKGKEIH 254 (601)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~ 254 (601)
..|..+.+.|+|-.+.++++. .|-..| ...++.+-..++....++.|.+.|
T Consensus 765 -----LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246667778888888887753 222222 123444444444444445444444
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.00061 Score=47.65 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=51.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHG-NLEFGQIAADRLIELEP 531 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 531 (601)
..+|..+...+...|++++|+..|++. ...| +...|..+..+|...| ++++|.+.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888889999998888877 3345 5667888888888888 69999999999998887
No 192
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.22 Score=47.22 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=90.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHH---cCChhhHHHHHHHHHHCCCCccHHhHHHHHH
Q 045105 372 ALVDMYAKCGSLKHARLAYKRISTP-------DLVSQNAMLTAYAM---HGHGKEGIAHFRRILASGFRPDHISFLSALS 441 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (601)
.++-+|....+++...++.+.+... ....--...-++.+ .|+.++|+.++..++...-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455555555555555555532 11111123334445 6777888888877655555677777777666
Q ss_pred HHhc---------cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh----HHHHHHH---Hh----C---CCCC
Q 045105 442 ACVH---------AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL----GEAYEFI---KK----I---PMAP 498 (601)
Q Consensus 442 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~----~---~~~~ 498 (601)
.|-. ....++|...|..--+ +.|+...--.++-.+.-.|.. .+..++- .. - .-..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5531 2235677777754222 234433211122222233321 1222222 11 1 1235
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+-..+.+++.++.-.||+++|.++++++..+.|+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 777888999999999999999999999999977443
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.064 Score=52.98 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=47.1
Q ss_pred HHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChh-----------hHHHHHH
Q 045105 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PDLV-----------SQNAMLT 406 (601)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-----------~~~~ll~ 406 (601)
.-+.+...+..|-++|..|-+. .++++.....+++.+|.++-++.++ +++. -|...-.
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 3334445555666666555432 3466677777788888777777763 3322 1233345
Q ss_pred HHHHcCChhhHHHHHHHHHHC
Q 045105 407 AYAMHGHGKEGIAHFRRILAS 427 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~ 427 (601)
+|.+.|+..+|.++++++...
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 567777777777777776554
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.15 E-value=0.11 Score=51.48 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=53.0
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHH----------
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP-MAPDSVM---------- 502 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~---------- 502 (601)
.+...+...+.+...+..|-++|..|-+ ..++++.....++|.+|..+-++.+ ..|+...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3455555556666777778888866533 2457777888899999988888875 2333321
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 503 -WGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 503 -~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
+.-.-.+|.+.|+..+|.++++++..
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12223345556666666666666544
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.13 E-value=0.00081 Score=41.77 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
.+|..+..+|...|++++|+++++++++..|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999988887764
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.13 E-value=0.02 Score=57.71 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=95.9
Q ss_pred CCCccHHhHHHHHHHHhc--c---CchHHHHHHHHHHHhcCCCcCc-hHHHHHHHHhhhc--------CChHHHHHHHHh
Q 045105 428 GFRPDHISFLSALSACVH--A---GSIKTGSEFFDLMAYYDVKPSL-KHYTCMVDLLSRA--------GELGEAYEFIKK 493 (601)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~ 493 (601)
+.+.|...|...+++... . +....|..+|+...+. .|+- ..|..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346677888888887543 2 3367889998665554 4553 3444444433221 123344454444
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 494 I---P-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 494 ~---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
. + ...++..+.++.-.....|++++|...++++.+++| +...|..++.++...|+.++|.+.+++.....+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3 1 223557777777777778999999999999999999 6889999999999999999999999988776643
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.005 Score=56.97 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=66.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA-CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVY 139 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 139 (601)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666655332 1122222222222 11134444566666666554 345555566666666
Q ss_pred HhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 140 RRCGDMLSALKIFSKFSIK------NEVSCNTIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
.+.++.+.|..+|++.... ....|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665522 2235666666666777777777777776654
No 198
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.03 E-value=0.013 Score=49.67 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=30.9
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETP-NLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
.|..+...+...|++++|+..|+........++ ...+|..+...+...|++++|+..+++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444455555555555555555544211111 123455555555555555555555555544
No 199
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.99 E-value=0.0035 Score=59.76 Aligned_cols=65 Identities=18% Similarity=0.067 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG---NYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+...|..+..+|...|++++|+..++++++++|++.. +|++++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445556666666666666666666666666665553 3666666666666666666666665554
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.99 E-value=0.051 Score=48.97 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=89.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCCCCCHh-h---HHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 045105 65 VIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR-T---LSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR 140 (601)
Q Consensus 65 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 140 (601)
....+...|++++|.+.|+++... -|+.. . .-.+..++.+.++++.|...++..++.-......-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344445567777777777777664 22221 1 12344556666777777777777766533222223333333322
Q ss_pred h--c---------------CCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHH
Q 045105 141 R--C---------------GDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMIS 203 (601)
Q Consensus 141 ~--~---------------~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (601)
. . .|...+.+.+ ..+..++.-|-...-..+|...+..+... .-..-+ .+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--------~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~ 183 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF--------RDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAE 183 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH--------HHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHH
Confidence 1 1 1111111111 12334444444444455555444444321 000111 3456
Q ss_pred HHHhCCChhHHHHHHHHHHHcCC-CCCChhhHHHHHHHhcccCCHHHHHHHHHHHH
Q 045105 204 GYVDNSLYDEAFSMFRDLLMRDG-IEPTSFTFGSVLIACADMNSLRKGKEIHALAI 258 (601)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (601)
.|.+.|.+..|..-++.+...-. .+........+..++...|..+.|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 67777777777777777765322 22233445566677777777777776665443
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.94 E-value=0.015 Score=47.10 Aligned_cols=95 Identities=7% Similarity=-0.101 Sum_probs=68.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACA 105 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (601)
.-.+...+...|++++|..+|+.+.. ..+-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33355556677888888888888777 455666777777777778888888888888877664 345566667777777
Q ss_pred hcCCcchHHHHHHHHHHh
Q 045105 106 RLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~ 123 (601)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888888877776654
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.94 E-value=0.17 Score=41.91 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=65.7
Q ss_pred CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHH
Q 045105 90 LEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-----NEVSCN 164 (601)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~ 164 (601)
..|+...-..|..++.+.|+..+|...|++....-+-.|......+.++....+++..|...++.+.+- +..+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456666666777778888888888888888777666677777777777777777777777777766521 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 165 TIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
.+.+.+...|....|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4444555555555555555555544
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0028 Score=44.82 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=50.0
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 476 DLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
..|.+.+++++|+++++++ ...| +...|......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677889999999998887 4445 5667777778888999999999999999999996665443
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.0033 Score=51.89 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh-----hcCCccCCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK-----DRRMHKSPG 570 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-----~~~~~~~~~ 570 (601)
....++..+...|+++.|.+.++++...+|.+...+..++.+|...|+..+|.++++++. +.|+.|+|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 455667778889999999999999999999999999999999999999999999998874 557776654
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.39 Score=45.17 Aligned_cols=86 Identities=8% Similarity=0.043 Sum_probs=49.8
Q ss_pred hcCCCchhhHHHHHHHHHHh---CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH---HHHHHHcCChh
Q 045105 342 CSSLATMERGKQVHAYAIRC---GYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAM---LTAYAMHGHGK 415 (601)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~ 415 (601)
..+.|++..|.+.+.+.+.. +..++...|........+.|+.++|+.--+...+.|..-.-.+ ..++...++++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777766643 3344555555555566667777777766666665554322222 23344456666
Q ss_pred hHHHHHHHHHHC
Q 045105 416 EGIAHFRRILAS 427 (601)
Q Consensus 416 ~a~~~~~~m~~~ 427 (601)
+|.+-++...+.
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 666666665554
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.83 E-value=0.04 Score=42.97 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=67.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccH--HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCc--CchHHHHHHHHhh
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDH--ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKP--SLKHYTCMVDLLS 479 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 479 (601)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++........+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677789999999999999888866553 356667788888999999999995544432110 1222223345667
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045105 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGC 510 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 510 (601)
..|+.++|++.+-..- .++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 8888888888775532 23333444444443
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.80 E-value=0.0021 Score=46.24 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC---CCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIEL----EPN---NTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.+++.+...|...|++++|+..++++.++ .++ -..++..++.++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777788888888888888887764 222 245777888888888999999888887653
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.80 E-value=0.011 Score=54.85 Aligned_cols=258 Identities=13% Similarity=0.066 Sum_probs=154.9
Q ss_pred HHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHH
Q 045105 276 YCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVH 355 (601)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 355 (601)
+|+.|+......+|+ ...+-| ..|..+ -..+|+.+-++|...+++++|.+++
T Consensus 27 Lck~gdcraGv~ff~----------aA~qvG-TeDl~t-----------------LSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFK----------AALQVG-TEDLST-----------------LSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHhccchhhhHHHHH----------HHHHhc-chHHHH-----------------HHHHHHHhcchhhhHhhHHHHHhhh
Confidence 678888888888777 444322 112222 2346888899999999999999987
Q ss_pred HHHHH--h--CCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCC----C-----CChhhHHHHHHHHHHcCC--------
Q 045105 356 AYAIR--C--GYDS-DVHIGTALVDMYAKCGSLKHARLAYKRIS----T-----PDLVSQNAMLTAYAMHGH-------- 413 (601)
Q Consensus 356 ~~~~~--~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~-----~~~~~~~~ll~~~~~~~~-------- 413 (601)
..-.. . |-+. .......|.+.+--.|.+++|.-+..+-. + .....+..+...|...|+
T Consensus 79 ~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe 158 (639)
T KOG1130|consen 79 THDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE 158 (639)
T ss_pred hhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh
Confidence 54221 1 1111 11222334445555677777765443322 0 122234445555544432
Q ss_pred ------------hhhHHHHHHHHH----HCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHH----HHhcCCCcC-chHH
Q 045105 414 ------------GKEGIAHFRRIL----ASGFRP-DHISFLSALSACVHAGSIKTGSEFFDL----MAYYDVKPS-LKHY 471 (601)
Q Consensus 414 ------------~~~a~~~~~~m~----~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~-~~~~ 471 (601)
++.|.++|.+=+ +.|-.. -...|..|-..|.-.|+++.|+...+. .++.|-+.. ...+
T Consensus 159 e~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~ 238 (639)
T KOG1130|consen 159 EKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAH 238 (639)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 223344443322 111100 112455566666667889998876622 233443332 3467
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCCchH
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-------PM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIEL----E--PNNTGNY 537 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~ 537 (601)
..|.+++.-.|+++.|.+.++.. +. .......-+|...|.-..++++|+....+-..+ + .....++
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 77889999999999999988764 21 224455567888888888899998877654443 2 1245688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
..|+.+|...|..+.|+.+.+.-+
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999999999999877554
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.76 E-value=0.043 Score=43.70 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=65.6
Q ss_pred HHHhhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHH
Q 045105 475 VDLLSRAGELGEAYEFIKKIP----MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG---NYVMLANLFAY 546 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 546 (601)
.....+.|++++|.+.|+.+. ..| ....--.++.+|.+.|+++.|...+++++++.|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 344567899999999998872 222 3455667888999999999999999999999998763 45555555555
Q ss_pred cCC---------------HHHHHHHHHHHhhcC
Q 045105 547 AGR---------------WSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~---------------~~~A~~~l~~~~~~~ 564 (601)
+.. ...|..-|+++.++-
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 554 666777777766555
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.73 E-value=0.0058 Score=50.42 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCCHhh
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA-----EGLEPNART 96 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 96 (601)
++..+...|++++|+.+.+.+.. ..|.+...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666666666666666 4455666666666666666666666666666532 255555544
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.12 Score=48.48 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=38.2
Q ss_pred hcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH
Q 045105 480 RAGELGEAYEFIKKI-PMAP-----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (601)
+.|++.+|.+.+.+. .+.| +...|........+.|+.++|+...+.+.+++|.-...+..-+.++...++|++|
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554443 2222 2223333333344445555555555555555554444455555555555555555
Q ss_pred HHHHHHH
Q 045105 554 ARTRQKM 560 (601)
Q Consensus 554 ~~~l~~~ 560 (601)
.+-++..
T Consensus 341 V~d~~~a 347 (486)
T KOG0550|consen 341 VEDYEKA 347 (486)
T ss_pred HHHHHHH
Confidence 5555444
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.03 Score=50.93 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=64.2
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC--chHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS--LKHYTCMVDLLSRAGELGEAYEFIKKIP-MAPD----SVMWGALL 507 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 507 (601)
.|...+....+.|++++|...|+.+.+...... ...+..+..+|...|++++|...|+++- .-|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555777777777755554321111 2355567777888888888888877761 1232 33444455
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
..+...|+++.|.+.++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5677889999999999999999886553
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.61 E-value=0.62 Score=43.55 Aligned_cols=272 Identities=13% Similarity=0.020 Sum_probs=124.3
Q ss_pred CCCchhHHHHHhhCC---CCCccchHHHHHHH--HhcCChHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHhhcCChHH
Q 045105 5 CGSLDDAKKVFKMMP---ERDCVSWNSVVTAC--AANGLVLEALECLERMSSLDNETPNLV--SWSAVIGGFTQNGYDEE 77 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~--~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~~~~~~ 77 (601)
.|+-..|.+.-.+.. ..|-...-.++.+- .-.|+++.|.+-|+.|... |... -...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHH
Confidence 355555555554443 23444444444433 2356666666666666542 2221 12222222334566666
Q ss_pred HHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhc-CCCchH--HHHHHHHHHH--h-cCCHHHHHH
Q 045105 78 AIGMLFRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNG-FMSNPF--VVNGLVDVYR--R-CGDMLSALK 150 (601)
Q Consensus 78 a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~--~~~~l~~~~~--~-~~~~~~a~~ 150 (601)
|...-++.-+. .|. .-.....+...+..|+++.|+++++.-.... +.++.. .-..|+.+-. . .-|...|..
T Consensus 173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 66665555443 222 2345556666666666666666666554332 233321 1112222111 1 122333333
Q ss_pred HHhhcC--CCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 045105 151 IFSKFS--IKNEV-SCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGI 227 (601)
Q Consensus 151 ~~~~~~--~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (601)
.-.+.. .||.. .-..-..++.+.|++.++-.+++.+-+....|++ -..|.+...-+.+++-++....-...
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 322222 23322 2223345566666666666666666655444442 22233332233444444443333334
Q ss_pred CCCh-hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCCHHHHHHHhh
Q 045105 228 EPTS-FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR-YQDLVAAQMAFD 290 (601)
Q Consensus 228 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~ 290 (601)
+||. .....+..+....|++..|..--+.... ..|....|..|.+.-.. .||-.++..++.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 4443 3344445555566666555544333332 24444555555444333 366666655554
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.44 E-value=0.89 Score=43.40 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
...+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-.. .++.+..--+..+..+.+
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~-~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL-KFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH-hCCCchHHHHHHHHHHHH
Confidence 334444444444555555555555555 3444455555555443 3455555555532111 111112222334444455
Q ss_pred cCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 481 AGELGEAYEFIKKI--PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 481 ~g~~~~A~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
-++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.+..|
T Consensus 479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 55555555555533 11111 34555555555555555555555555555555
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.44 E-value=0.83 Score=42.99 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=88.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 371 TALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
+.-+.-+...|+...|.++-.+..-|+..-|...+.+|+..++|++-..+... +-++.-|..++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455566778888898888888888888999999999999999877765432 223478888999999999999
Q ss_pred HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045105 451 TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGC 510 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 510 (601)
+|..+... + .+..-+..|.+.|++.+|.+.--+.. |...+..+...+
T Consensus 255 eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 98888754 1 12456788899999999987766543 444444443333
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.41 E-value=0.15 Score=44.75 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=90.5
Q ss_pred HHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHHHHHHHhccC
Q 045105 376 MYAKCGSLKHARLAYKRIST--PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLSALSACVHAG 447 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g 447 (601)
.+...|++.+|...|+.+.. |+ ....-.++.++.+.|+++.|...++++++. .|+.. .+...+.+.+.-.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 34556777777777766651 21 123445667777888888888888887774 44432 2222222222111
Q ss_pred c-------------hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045105 448 S-------------IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514 (601)
Q Consensus 448 ~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 514 (601)
. ..+|.. .+..++.-|=......+|...+..+........ -.+...|.+.|
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~~~~ 155 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYYKRG 155 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHCTT
T ss_pred hCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcc
Confidence 1 112222 334444555555555555555444421111111 12455688999
Q ss_pred ChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHH
Q 045105 515 NLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 555 (601)
.+..|..-++.+++..|+.+ .+...++.+|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999754 466778889999999885544
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.34 E-value=0.026 Score=43.39 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=65.6
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-C---CchHHHHHHHHHHcCCH
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN-N---TGNYVMLANLFAYAGRW 550 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~---~~~~~~l~~~~~~~g~~ 550 (601)
++...|+.+.|++.|.+. .+.| ....|+.-..++.-.|+.++|.+-++++.++..+ . ...|..-+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456778888888888766 4444 5677888888888888888888888888887432 2 24566667777888888
Q ss_pred HHHHHHHHHHhhcCC
Q 045105 551 SDLARTRQKMKDRRM 565 (601)
Q Consensus 551 ~~A~~~l~~~~~~~~ 565 (601)
+.|+.-|+..-+-|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888887766553
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.22 Score=43.71 Aligned_cols=151 Identities=16% Similarity=0.215 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 76 EEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
+..+++|++=.. .....+++.+...+.+.-....+...++...+.++.....|.+.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455555554332 2445666777777888888888888888776777888888888888889999888888865
Q ss_pred CC----CCchhHHHHH-----HHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 045105 156 SI----KNEVSCNTII-----VGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDG 226 (601)
Q Consensus 156 ~~----~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 226 (601)
.+ -|..+++.++ ..+.-.+++..|...+.++...+ ..|+..-|.-.-+..-.|+..+|++.++.|.+
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--- 314 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--- 314 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 52 2444444333 34556778888888888887654 33444444333344446788889998888876
Q ss_pred CCCChhhHHHH
Q 045105 227 IEPTSFTFGSV 237 (601)
Q Consensus 227 ~~p~~~~~~~l 237 (601)
..|...+-+.+
T Consensus 315 ~~P~~~l~es~ 325 (366)
T KOG2796|consen 315 QDPRHYLHESV 325 (366)
T ss_pred cCCccchhhhH
Confidence 55665554433
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.23 Score=44.89 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=78.7
Q ss_pred CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC-CHHHHH
Q 045105 430 RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG---ELGEAYEFIKKI-PMAP-DSVMWG 504 (601)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~~ 504 (601)
+-|...|..|..+|...|+.+.|...|....+. -++++..+..+.+++.... ...++..+|+++ ...| |.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 445678999999999999999999999554332 2445566777777765432 467788899888 4455 566667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
-|...+...|++.+|...++.+.+..|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7777889999999999999999999886544
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.06 E-value=0.5 Score=36.75 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=82.3
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
+.-.|..++..+++.+...+. +..-++.+|--....-+-+-..++++.+-+ -.|.. .+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHH
Confidence 345677888888888887642 344555555554444444555555544322 22221 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 488 YEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
..-+-.++ .+..-+...+......|+.|.-.+++..+...+..+|..+..++.+|.+.|+..++.+++++.=++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 223334556777888899988888988888655458999999999999999999999999999998874
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.05 E-value=0.42 Score=41.86 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=38.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETP-NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
....+...|++.+|+..|+.+.......| -....-.++.++-+.|+++.|...++++.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556667888888888888776422212 2334556677777888888888888887765
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.04 E-value=1.5 Score=42.00 Aligned_cols=427 Identities=12% Similarity=0.060 Sum_probs=234.6
Q ss_pred HHHhhCCC--CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 045105 13 KVFKMMPE--RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL 90 (601)
Q Consensus 13 ~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 90 (601)
++=+++.+ .|..+|-.|+..+..++.+++..+++++|.. ..+--..+|..-|.+-...+++.....+|.+-.....
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~--pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS--PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC--CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 44555554 4677999999999999999999999999987 5666677899889988888999999999998877643
Q ss_pred CCCHhhHHHHHHHHHhcCCc------chHHHHHHHHHH-hcCCCc-hHHHHHHHHHH---Hhc------CCHHHHHHHHh
Q 045105 91 EPNARTLSSVLPACARLQKL------SLGKEFHGYITR-NGFMSN-PFVVNGLVDVY---RRC------GDMLSALKIFS 153 (601)
Q Consensus 91 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---~~~------~~~~~a~~~~~ 153 (601)
+...|...+.-..+.... ....+.|+.... .++.|- ...|+..+... -.. .+++...+.+.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 344555555444333321 112234444433 344443 23444333322 122 33455666666
Q ss_pred hcCCC---C-------chhHHHHHHHHHh-------cCCHHHHHHHHHHHHh--cCCCC----CeeehHHHHHHHHhCCC
Q 045105 154 KFSIK---N-------EVSCNTIIVGYCE-------NGNVAEARELFDQMEH--LGVQR----GIISWNSMISGYVDNSL 210 (601)
Q Consensus 154 ~~~~~---~-------~~~~~~li~~~~~-------~g~~~~a~~~~~~m~~--~g~~~----~~~~~~~li~~~~~~~~ 210 (601)
++... | -..|..=++-... .--+-.|...++++.. .|+.. +..+++..-+..
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s----- 260 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS----- 260 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc-----
Confidence 66522 1 1112111111111 1113456666666642 34332 223333321100
Q ss_pred hhHHHHHHHHHHHcCCCCCChhh--------HHHH--------------HHHhcccCCHHHHHHHHHHHHHcCCCCchhH
Q 045105 211 YDEAFSMFRDLLMRDGIEPTSFT--------FGSV--------------LIACADMNSLRKGKEIHALAIALGLQSDTFV 268 (601)
Q Consensus 211 ~~~a~~~~~~~~~~~~~~p~~~~--------~~~l--------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (601)
...=+.+.+. ....+......+ ++.. ...+...++-+.|.+.. ..|++..+..
T Consensus 261 ~S~WlNwIkw-E~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv----~rg~~~spsL 335 (660)
T COG5107 261 DSNWLNWIKW-EMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTV----ERGIEMSPSL 335 (660)
T ss_pred cchhhhHhhH-hhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHH----HhcccCCCch
Confidence 0000111111 111232222211 1111 11223334444444432 3455544444
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhc----CCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC
Q 045105 269 GGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKED----GFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS 344 (601)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 344 (601)
...+-..|--..+-+.....|+...+....--.+.+. +...+. -+.--.++.+ ..--...|...++.-.+
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~-e~~~Ell~kr-----~~k~t~v~C~~~N~v~r 409 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNF-EYSKELLLKR-----INKLTFVFCVHLNYVLR 409 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCc-cccHHHHHHH-----HhhhhhHHHHHHHHHHH
Confidence 4445556666666666666666332221111111111 111110 1111111111 11223456677788888
Q ss_pred CCchhhHHHHHHHHHHhC-CCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChhhH-HHHHHHHHHcCChhhHHHH
Q 045105 345 LATMERGKQVHAYAIRCG-YDSDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLVSQ-NAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~-~~ll~~~~~~~~~~~a~~~ 420 (601)
...++.|+.+|-+..+.+ +.+++.++++++..++ .|+...|..+|+.-. -||...| +-.+..+...++-..|..+
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 888999999999999888 5788888899888776 588888999888654 3555544 4456667788888899999
Q ss_pred HHHHHHCCCCcc--HHhHHHHHHHHhccCchHHHHHHHHHHHh
Q 045105 421 FRRILASGFRPD--HISFLSALSACVHAGSIKTGSEFFDLMAY 461 (601)
Q Consensus 421 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (601)
|+..+.. +..+ ...|..+|..=..-|+...+..+-+.+..
T Consensus 489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 9866553 3333 34788888877788888777776655554
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=2.3 Score=44.16 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=106.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHH----HHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAV----IGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
....-|..+.+...++-|+.+...-. .+..+-..+ .+.+-+.|++++|...|-+-... +.|+ .+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence 34456677777778888887776622 223333333 34455789999998887766543 2332 34
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch-hHHHHHHHHHhcCCHHHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEV-SCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a 179 (601)
+.-+...........+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+........ -....+..+.+.+-.++|
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHH
Confidence 55555556666667778888888854 4455567889999999999888888776622111 144555556666666665
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
.-+-..... ... .+.-.+-..+++++|++.+..+.
T Consensus 483 ~~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEW---VLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhcCC
Confidence 554433321 111 12223334566777777765543
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.03 E-value=1.4 Score=41.45 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=132.6
Q ss_pred HHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-----CCChh--hHHHHHHHHHH--
Q 045105 340 SACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-----TPDLV--SQNAMLTAYAM-- 410 (601)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~--~~~~ll~~~~~-- 410 (601)
-..-+.|+.+.|..+-+..-+.-. .-.-...+.+...+..|+++.|+++.+.-. +++.. .-..|+.+-..
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 334456666666666665544321 123445567777777888888877776544 23332 12223332211
Q ss_pred -cCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHH
Q 045105 411 -HGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAY 488 (601)
Q Consensus 411 -~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 488 (601)
.-+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+++.+=+....|+ .+ .+..+.+.|+. ++
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~ 312 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--AL 312 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HH
Confidence 2335555555555544 567754 344456788899999999999977655544443 33 22233455553 33
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-CCHHHHHHHHHHHhh
Q 045105 489 EFIKKI----PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA-GRWSDLARTRQKMKD 562 (601)
Q Consensus 489 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~ 562 (601)
.-+++. ..+| +.....++..+-...|++..|..--+.+....| ....|..++.+-... |+-.+++..+-+...
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333222 2345 455666777888888999999999999999998 777888888887655 999999888776654
Q ss_pred c
Q 045105 563 R 563 (601)
Q Consensus 563 ~ 563 (601)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 225
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.12 Score=40.82 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=52.4
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhc--------------CCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSL--------------DNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
|..++..++.++++.|+.+....+++..-.. ....|+..+..+++.+|+.+|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456778888888888888888888764321 12345555666666666666666666666665544
Q ss_pred c-CCCCCHhhHHHHHHHHH
Q 045105 88 E-GLEPNARTLSSVLPACA 105 (601)
Q Consensus 88 ~-~~~p~~~~~~~ll~~~~ 105 (601)
. +++.+..+|..|++-+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 3 55555556666665443
No 226
>PRK11906 transcriptional regulator; Provisional
Probab=96.01 E-value=0.1 Score=50.29 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=77.3
Q ss_pred HHHHHHHHHc-----CChhhHHHHHHHHHH-CCCCccH-HhHHHHHHHHhc---------cCchHHHHHHHHHHHhcCCC
Q 045105 402 NAMLTAYAMH-----GHGKEGIAHFRRILA-SGFRPDH-ISFLSALSACVH---------AGSIKTGSEFFDLMAYYDVK 465 (601)
Q Consensus 402 ~~ll~~~~~~-----~~~~~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~ 465 (601)
..++.+.... ...+.|+.+|.+... +.+.|+- ..|..+..++.. .....+|.++-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 4555554442 134567778888772 2245554 344444333321 112223334433333332 3
Q ss_pred cCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHH--HH
Q 045105 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM--LA 541 (601)
Q Consensus 466 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~ 541 (601)
.|......+..++.-.|+.+.|...|++. ...|| ..+|......+..+|+.++|.+.++++.+++|....+-.. .+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 34445555555556666677777777666 34554 3344444445556677777777777777777654333222 22
Q ss_pred HHHHHcCCHHHHHHHH
Q 045105 542 NLFAYAGRWSDLARTR 557 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l 557 (601)
..|+. ...++|.+++
T Consensus 416 ~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 416 DMYVP-NPLKNNIKLY 430 (458)
T ss_pred HHHcC-CchhhhHHHH
Confidence 23333 3355555553
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.91 E-value=0.012 Score=42.26 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-------PM-APD-SVMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+++.+...|...|++++|++.+++. +. .|+ ..++..+...|...|++++|++.++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555666666666665555544 10 122 345666666777777777777777776654
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.079 Score=41.81 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 045105 160 EVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI 239 (601)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 239 (601)
..++..+|.++++.|+++....+++..- |+.++...- .+. ........|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc----------cCCCCCCCCCHHHHHHHHH
Confidence 4456666666777777666666665443 222111000 000 1122445555666666666
Q ss_pred HhcccCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHH
Q 045105 240 ACADMNSLRKGKEIHALAIA-LGLQSDTFVGGALVEM 275 (601)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 275 (601)
+++..+++..|.++++...+ .+++.+..+|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66556666666665555543 2455555555555554
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.85 E-value=1.3 Score=42.13 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CchhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCeeehH
Q 045105 130 FVVNGLVDVYRRCGDMLSALKIFSKFSIK-------NEVSCNTIIVGYCE---NGNVAEARELFDQMEHLGVQRGIISWN 199 (601)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (601)
.+...++-+|-...+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34445555688888899999999888743 12222334445566 899999999999966555578888888
Q ss_pred HHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCChhh---HHHHHHHhcccC-CHHHHHHHH----HHHHHcCC
Q 045105 200 SMISGYVD---------NSLYDEAFSMFRDLLMRDGIEPTSFT---FGSVLIACADMN-SLRKGKEIH----ALAIALGL 262 (601)
Q Consensus 200 ~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~-~~~~a~~~~----~~~~~~~~ 262 (601)
.+.+.|-+ ....++|+..|.+.-. +.|+.++ +.+++....... .-.+..++- ..+.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 88877632 1237788888887655 4455544 333333332211 122233333 22223343
Q ss_pred C---CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 263 Q---SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 263 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
. .+--.+.+++.+..-.|+.++|.+..+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 233455688999999999999999988
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.036 Score=51.84 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=95.6
Q ss_pred HHHHhccCchHHHHHHHHHHHhc-----CCC---------cCchHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHH
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYY-----DVK---------PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM-APDSVMW 503 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~ 503 (601)
.+.+.+.|++..|..-|+..... +.+ .-..++..|.-++.+.+++.+|++...+. .. .+|....
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 46888999999999998553321 111 12345666777888999999999998876 33 3466666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH-HHHHHHHhhcC
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL-ARTRQKMKDRR 564 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~l~~~~~~~ 564 (601)
-.=..+|...|+++.|...|+++++++|+|-.+-..|..+-.+...+.+. .++|..|...-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67778888999999999999999999999988888888888777666555 77888886443
No 231
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.80 E-value=2.6 Score=42.81 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCC--------CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCC
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEP--------NARTLSSVLPACARLQKLSLGKEFHGYITRNGFM 126 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 126 (601)
.|.+..|..|...-...-.++.|+..|-+...- |++. +...-.+=+. +-.|.+++|+++|-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 577778888877766666666666666554321 2211 0000011111 12356666666665554432
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 045105 127 SNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-----NEVSCNTIIVGYCENGNVAEARELFDQ 185 (601)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~ 185 (601)
..|..+.+.||+-.+.++++.=... -..+|+.+...+.....|++|.+.|..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345555666666666665543211 123455555555555556655555544
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.86 Score=41.18 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=50.3
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChhHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA---LLGGCVSHGNLEFGQ 520 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~ 520 (601)
...|++.+|..+|....... +-+...--.+.++|...|+.+.|..++..++......-+.. -+..+.+..+.....
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34445555555543322221 11123334455555555555555555555543322221211 122222222222221
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.++.-...+|+|...-..++..+...|+.++|.+.|=.+.
T Consensus 224 -~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 -DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred -HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2223333455555555666666666666666665555444
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.092 Score=46.69 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=55.0
Q ss_pred hcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHHHHHHHcCC
Q 045105 480 RAGELGEAYEFIKKI----P---MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLANLFAYAGR 549 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 549 (601)
+.|++.+|...|... + ..|+.. --|...+...|+++.|...|..+.+-.|++ |..+..|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~--yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAY--YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhH--HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 555566666666554 1 122332 235666777777777777777777766653 4567777777788888
Q ss_pred HHHHHHHHHHHhhcCC
Q 045105 550 WSDLARTRQKMKDRRM 565 (601)
Q Consensus 550 ~~~A~~~l~~~~~~~~ 565 (601)
.++|..+|++..++-+
T Consensus 231 ~d~A~atl~qv~k~YP 246 (262)
T COG1729 231 TDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 8888888877776663
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.60 E-value=0.93 Score=36.87 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
......++..+...+.......+++.+... + +.+...++.++..|++.+ ..+..+.+.. ..+......+++
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~ 77 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGK 77 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHH
Confidence 334556777777778888888888887774 2 367778888888888753 3344444432 223444555667
Q ss_pred HHHhcCCcchHHHHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYI 120 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~ 120 (601)
.|.+.+-++.+.-++..+
T Consensus 78 ~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 78 LCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHcCcHHHHHHHHHhh
Confidence 776666666665555543
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.13 Score=48.40 Aligned_cols=127 Identities=14% Similarity=0.018 Sum_probs=86.5
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHC-----CCCc---------cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILAS-----GFRP---------DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK 469 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~-----~~~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 469 (601)
-...|.+.|++..|..-|++.++. +..+ -..++..+.-++.+.+.+..|++........+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 356788899999999998886542 1111 12246667778888999999998887766655 45566
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHhcCC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLGGCVS-HG-NLEFGQIAADRLIELEP 531 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~~p 531 (601)
..--=..++...|+++.|+..|+++ .+.|+......=+..|.+ .. ..+...++|..|...-+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5556677888899999999999888 567765555544444432 22 23455677777776644
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.53 E-value=0.077 Score=50.99 Aligned_cols=62 Identities=6% Similarity=-0.064 Sum_probs=42.3
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSV----MWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
...++.+..+|.+.|++++|+..|++. .+.|+.. .|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666666777777777777777664 4556532 4677777777777777777777777776
No 237
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.22 E-value=0.17 Score=40.44 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=23.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++.+.+..+++.+.-+.|+.+..-..-++++...|+|++|.++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3444444444444444444444444444444444444444444444444333
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.17 E-value=0.18 Score=41.11 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHHHHHh---hhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 470 HYTCMVDLL---SRAGELGEAYEFIKKI-PMAPDSVMWGAL-LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 470 ~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
+.+.|++.+ .+.++.+++..+++.+ ...|.......+ ...+...|++.+|..+++.+.+..|..+..-..++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 444555443 3566777777777776 245554433332 22355677788888888777777776666666666666
Q ss_pred HHcCCHH
Q 045105 545 AYAGRWS 551 (601)
Q Consensus 545 ~~~g~~~ 551 (601)
...|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 6666644
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=1.3 Score=36.05 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 045105 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL 107 (601)
Q Consensus 62 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 107 (601)
-..++..+...+.+.....+++.+...+ ..+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3455666666666777777777766655 34555666666666654
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.13 E-value=0.13 Score=45.59 Aligned_cols=112 Identities=15% Similarity=0.239 Sum_probs=67.1
Q ss_pred HHHhhcC--CCCchhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 150 KIFSKFS--IKNEVSCNTIIVGYCE-----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 150 ~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
..|.... ++|-.+|-+.+..+.. .++++-.-..++.|.+.|+..|..+|+.|+..+-+..-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------- 123 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------- 123 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----------
Confidence 3444444 4466666666666544 466777777888999999999999999998876543221
Q ss_pred HcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 045105 223 MRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQD 281 (601)
Q Consensus 223 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (601)
|... +-.+.-.|-+ +-+=+.+++++|...|+.||..+-..|+++|.+.+-
T Consensus 124 ------P~nv-fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 124 ------PQNV-FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------cHHH-HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1110 1111111111 112245666677777777777776677777666554
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.11 E-value=0.17 Score=44.81 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 111 SLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 111 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+-+.+++++|...|+.||..+-..|++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4467778888888888888887778887777654
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.07 E-value=2.3 Score=37.75 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=90.3
Q ss_pred HhcCChHHHHHHHhcCCC------CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHHhHHHHHHHHhc-----
Q 045105 378 AKCGSLKHARLAYKRIST------PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHISFLSALSACVH----- 445 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~----- 445 (601)
.+.|++++|.+.|+.+.. -...+.-.++-++.+.+++++|+..+++....- -.|| ..|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 356777777777776652 122344445566677788888888888877642 2222 234434444331
Q ss_pred --cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 446 --AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 446 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
..+...+...+..+.+ ++.-|=...-..+|..-+..+.... ..-=..+..-|.+.|.+..|..-+
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~L-A~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDAL-AGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHH
Confidence 1122222222222111 1111111111122221111110000 000123455688899999999999
Q ss_pred HHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 524 DRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 524 ~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
+.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+.
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99998877654 455667778899999999988854443
No 243
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.05 E-value=0.28 Score=46.00 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHH----HhCC-CCchhHHhHHHHHHHhcCChHHHHHHHhcCC---------CCChh
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAI----RCGY-DSDVHIGTALVDMYAKCGSLKHARLAYKRIS---------TPDLV 399 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~ 399 (601)
.++.+.+++.-.|+++.|.+.|+... +.|- .......-+|.+.|.-..++++|+.++.+-. .....
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455555666667777766665433 2221 1233445567777777777888877776543 13445
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
.+-+|..+|...|..++|+.+.+..++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 677788888888888888877766544
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.93 E-value=0.77 Score=35.64 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=69.5
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHHhc
Q 045105 31 TACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTL---SSVLPACARL 107 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~ 107 (601)
-+++..|+.+.|++.|.+... ..|.....||.-..++.-+|+.++|++=+++..+..-.-+.... ..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 357788999999999999887 56678889999999999999999999999888775322233222 2222335566
Q ss_pred CCcchHHHHHHHHHHhc
Q 045105 108 QKLSLGKEFHGYITRNG 124 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g 124 (601)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
No 245
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.90 E-value=6 Score=41.64 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=90.7
Q ss_pred hcCChHHHHHHHhcCCC-----CC-----hhhHHHHHHH--HHHcCChhhHHHHHH--------HHHHCCCCccHHhHHH
Q 045105 379 KCGSLKHARLAYKRIST-----PD-----LVSQNAMLTA--YAMHGHGKEGIAHFR--------RILASGFRPDHISFLS 438 (601)
Q Consensus 379 ~~g~~~~a~~~~~~~~~-----~~-----~~~~~~ll~~--~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ 438 (601)
-.|++..|...++.+.+ |+ ...+..++.| +-..|+.+.|+..|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 36778888888876652 21 1233333333 334589999999997 4444444444444433
Q ss_pred H--HHHHhccC--chHH--HHHHHHHHHhc-CCCc--CchHHHHH-HHHhhhcC---------ChHHHHHHH-HhCCCCC
Q 045105 439 A--LSACVHAG--SIKT--GSEFFDLMAYY-DVKP--SLKHYTCM-VDLLSRAG---------ELGEAYEFI-KKIPMAP 498 (601)
Q Consensus 439 l--~~~~~~~g--~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g---------~~~~A~~~~-~~~~~~~ 498 (601)
+ +..+...+ ..++ ..++++.+... .-.| +..++..+ +.++...- .+.++++.. ++.+..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 2 11122222 2222 56666543331 1122 22233333 33332111 223334444 3333111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCc-hH-----HHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELE---PNNTG-NY-----VMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
-....-.++..-.-.|+.++..+.......+. |+... .| ..+...+...|+.++|..+..+..
T Consensus 533 l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 533 LLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 12223334444334788887777666665542 32222 22 235556788999999999876653
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=94.85 E-value=1.2 Score=43.26 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHh
Q 045105 415 KEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKK 493 (601)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 493 (601)
.+|.++.++.++.+ +-|......+..+..-.++++.|...|+.... +.|| ..+|........-+|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555566554 44555555555555555667777777755333 3344 23444444445556777777777766
Q ss_pred -CCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 494 -IPMAPDS---VMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 494 -~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+...|.. .+..-.+..|+.++ .+.|+.++-+-.+.
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 436 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETES 436 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcccc
Confidence 3444432 22333333444433 55566655444333
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.85 E-value=2.7 Score=37.48 Aligned_cols=216 Identities=18% Similarity=0.140 Sum_probs=142.2
Q ss_pred chhhHHHHHHHHHHhCCC-CchhHHhHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHHcCChhhHHHH
Q 045105 347 TMERGKQVHAYAIRCGYD-SDVHIGTALVDMYAKCGSLKHARLAYKRIS-----TPDLVSQNAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~ 420 (601)
....+...+......... .....+......+...+.+..+...+.... ......+......+...++...+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444433322 124555666777777888887777776653 33445566666677777888888888
Q ss_pred HHHHHHCCCCccHHhHHHHHH-HHhccCchHHHHHHHHHHHhcCCCc----CchHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 421 FRRILASGFRPDHISFLSALS-ACVHAGSIKTGSEFFDLMAYYDVKP----SLKHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 421 ~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
+.........+. ........ .+...|+++.+...+..... ..| ....+......+...++.+++...+.+.
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888887543331 22222223 67888899999999866533 222 2233334444466778888998888877
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 495 PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 495 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...++ ...+..+...+...++++.+...+..+....|.....+..+...+...|.++++...+.+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 32333 567777788888888889999999999998886566677777777777778888888877765543
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=1.5 Score=45.49 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=33.6
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH
Q 045105 378 AKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
.+.|++++|...|-+....-.. ..++.-|....+..+-..+++.+.+.|+.- ...-..|+.+|.+.++.+...++.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHH
Confidence 3455555555544333211000 113344444444555555555555555322 222334555555555555554444
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.79 E-value=0.086 Score=30.18 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.|..+...+...|++++|++.++++.+++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666666666664
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.77 E-value=0.4 Score=44.27 Aligned_cols=192 Identities=14% Similarity=0.077 Sum_probs=91.4
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHhcC-------CC--CChhhHHHHHHHHHHcCChhhHHHHHHHHHHC-CCCcc---HH
Q 045105 368 HIGTALVDMYAKCGSLKHARLAYKRI-------ST--PDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS-GFRPD---HI 434 (601)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~ 434 (601)
.++..+..+.++.|.++++...--.- .. .-...|..+.+++-+..++.+++.+-+.-... |..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34445555556666655554322111 11 11123444445555545555555544433321 12221 11
Q ss_pred hHHHHHHHHhccCchHHHHHHHHH-HHhcCCC----cCchHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDL-MAYYDVK----PSLKHYTCMVDLLSRAGELGEAYEFIKKI-------PMAPDSVM 502 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~ 502 (601)
...++..++...+.++++++.|+. +.-..-. ....++..|...|.+..++++|.-+..++ ++..=...
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 233345556666666666666632 2221111 12335666667777777776665554433 21111122
Q ss_pred HH-----HHHHHHHhcCChhHHHHHHHHHHhcC------CCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 503 WG-----ALLGGCVSHGNLEFGQIAADRLIELE------PNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 503 ~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|. .+.-++...|....|.+..+++.++. |-.......++++|-..|+.+.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22 23344556666666666666665541 11233444566677777776666655554
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=3 Score=37.84 Aligned_cols=54 Identities=15% Similarity=-0.013 Sum_probs=32.7
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 32 ACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 32 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
.....|++.+|..+|....+ ..+-+...--.++.+|...|+.+.|..++..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 44556666666666666665 2333445555566666666666666666666644
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.66 E-value=1.3 Score=43.80 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=94.2
Q ss_pred HHHHhcCChHHHHHHHH--HhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 31 TACAANGLVLEALECLE--RMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~--~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
....-.++++++.+..+ .+.. ..+....+.++..+-+.|.++.|+++-+.-.. -.....+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~----~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP----NIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG----G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhhhcc----cCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcC
Confidence 34455678888777665 2221 12245577888888888888888876544322 123445567
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
+++.|.++.++ ..+...|..|.+...+.|+++-|++.|.+.. -|..++-.|.-.|+.+.-.++.+....
T Consensus 333 ~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777665432 3356678888888888888888888887766 466666677777777777777766665
Q ss_pred cCCCCCeeehHHHHHHHHhCCChhHHHHHHHH
Q 045105 189 LGVQRGIISWNSMISGYVDNSLYDEAFSMFRD 220 (601)
Q Consensus 189 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (601)
.| -++....++.-.|+.++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 255556666666777777777755
No 253
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.63 E-value=3.8 Score=42.88 Aligned_cols=213 Identities=13% Similarity=0.056 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCc-------chHHHHHHHHHHhcCCCchH---
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKL-------SLGKEFHGYITRNGFMSNPF--- 130 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~--- 130 (601)
.-=.+|-.|.+.|++++|.++..+.... .......|...+..+....+- ++...-|++..+.....|+.
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 3345788899999999999999666544 456667788888888765322 23444455555443322433
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhhcCCCCchhHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCCeeeh
Q 045105 131 VVNGLVDVYRRCGDMLSAL-KIFSKFSIKNEVSCNTIIVGYCENGN-----------VAEARELFDQMEHLGVQRGIISW 198 (601)
Q Consensus 131 ~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~g~~~~~~~~ 198 (601)
+|..+ +++.-...-. .+.. +..-|-.+=-.+++... ++...+.+.+.-...+.+ ....
T Consensus 192 vY~il----g~cD~~~~~~~~V~~-----tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 192 VYKIL----GRCDLSRRHLPEVAR-----TIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HHHHH----HT--CCC-S-TTC-------SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-----
T ss_pred HHHHH----hcCCccccchHHHhC-----cHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhH
Confidence 22222 2222100000 0000 11111111111222111 122222222222222223 1122
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHH
Q 045105 199 NSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGL-QSDTFVGGALVEMYC 277 (601)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 277 (601)
-.....+.-.|+++.|++.+-. ..+...+..++.+.+..+.-.+-.+... ..+..... .|...-+..||..|.
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~---~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR---NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh---hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 2345667788999999999876 1456677888888777654333222211 22221110 111245667788777
Q ss_pred h---cCCHHHHHHHhh
Q 045105 278 R---YQDLVAAQMAFD 290 (601)
Q Consensus 278 ~---~g~~~~a~~~~~ 290 (601)
+ ..++..|.+.+-
T Consensus 336 ~~F~~td~~~Al~Y~~ 351 (613)
T PF04097_consen 336 RSFEITDPREALQYLY 351 (613)
T ss_dssp HTTTTT-HHHHHHHHH
T ss_pred HHHhccCHHHHHHHHH
Confidence 6 456777777766
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=3 Score=38.43 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=70.0
Q ss_pred cCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHhcCCcc
Q 045105 36 NGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSS----VLPACARLQKLS 111 (601)
Q Consensus 36 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~ 111 (601)
.|++.+|-..++++.+ ..|.|..+++..=.++..+|+.......++++... ..||...|.. +.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3445555555555555 34555555555555666666666555555555432 1222211211 111223445555
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CchhHHHHHHHHHhcCCHHHHHHHHH
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-------NEVSCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
+|++.-+...+.+ +.|.....++.+.+--.|++.++.++..+-... -...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 5555555554443 334444455555555556666666555444321 01123333334445556666666654
Q ss_pred H
Q 045105 185 Q 185 (601)
Q Consensus 185 ~ 185 (601)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.59 E-value=0.13 Score=43.13 Aligned_cols=125 Identities=13% Similarity=0.060 Sum_probs=72.5
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 045105 441 SACVHAGSIKTGSEFFDLMAYYDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHG 514 (601)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 514 (601)
.-+...|++++|..-|......-.+.. ...|..-.-++.+.+.++.|++-..+. .+.|. ......-..+|-+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 446778888888888855444322211 122333344667888888888777665 44442 222223344566777
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH--HHHHHHhhcCC
Q 045105 515 NLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA--RTRQKMKDRRM 565 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~--~~l~~~~~~~~ 565 (601)
.++.|++-|+++.+.+|....+-...+.+--....-.+.+ +.+.++++.|-
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN 235 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGN 235 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888888888876655555554433333222222 23445555553
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.44 Score=43.47 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=112.9
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHH----HHHHHhhhcCChH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYT----CMVDLLSRAGELG 485 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 485 (601)
-.|++.+|...|+++++. .+.|...+.-.-.+|...|+...-...++.+.. ...++...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip-~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP-KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc-ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 468889999999999886 466777888888899999988887777766433 2345554443 3445567899999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 486 EAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 486 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
+|++.-++. .++| |.....++...+-..|+..++.+...+-...=.. -..-|-+.+-.+...+.++.|++++++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999998887 4444 6667777777777788888888776654433111 245677788888889999999999986
Q ss_pred HhhcCCccCCC
Q 045105 560 MKDRRMHKSPG 570 (601)
Q Consensus 560 ~~~~~~~~~~~ 570 (601)
=.-....++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 54333334444
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.39 E-value=0.086 Score=30.25 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+|..+...|...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666664
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=0.5 Score=42.20 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCC--cCchHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVK--PSLKHYTCMVDLLSRAGELGEAYEFIKKI----PMAP-DSVMWGALL 507 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 507 (601)
.|+.-+.. ...|++..|...|....+.... -....+-.|.+++...|++++|..+|..+ +..| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544443 3455577777777554443211 11223445777777777777777777655 2222 234455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
....+.|+.+.|...|+++.+..|+.+.+-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 666777888888888888888888655443
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=7.2 Score=40.23 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=83.3
Q ss_pred hhcCChHHHHHHHHHHH--------HcCCCCCHhhHHH-----HHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHH
Q 045105 70 TQNGYDEEAIGMLFRMQ--------AEGLEPNARTLSS-----VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLV 136 (601)
Q Consensus 70 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 136 (601)
.+.-++++-..+.+.++ .-|++.+..-|.. ++.-+...+.+..|.++-..+...-..- ..+|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34445555444443332 2366666555543 4555566677777777776664322122 45666666
Q ss_pred HHHHhcC---CHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCeeehHHHHHHHHh
Q 045105 137 DVYRRCG---DMLSALKIFSKFSI--KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ----RGIISWNSMISGYVD 207 (601)
Q Consensus 137 ~~~~~~~---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~ 207 (601)
.-+.+.. +-+-+..+-+++.. ....+|..+.......|+.+-|..+++.=...+-. .+..-+..-+.-+.+
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaie 558 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIE 558 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHh
Confidence 6666542 23333333344444 35566777777777888888887776653222110 123334445555566
Q ss_pred CCChhHHHHHHHHHHH
Q 045105 208 NSLYDEAFSMFRDLLM 223 (601)
Q Consensus 208 ~~~~~~a~~~~~~~~~ 223 (601)
.|+.+-...++..+..
T Consensus 559 s~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 559 SGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCchhHHHHHHHHHH
Confidence 6666666666655543
No 260
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.26 E-value=0.22 Score=45.11 Aligned_cols=59 Identities=25% Similarity=0.365 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
+..++..+...|+.+.+.+.++++.+.+|-+...|..+..+|.+.|+...|...++++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555543
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.05 E-value=3.1 Score=41.85 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCC-CCccH-----HhHHHHHHHHhc----cCchHHHHHHHHHHHhcCCCcCchHH
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASG-FRPDH-----ISFLSALSACVH----AGSIKTGSEFFDLMAYYDVKPSLKHY 471 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 471 (601)
..++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.+++..+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 334444445566666666666554422 11100 123333333332 34556677777655443 3444433
Q ss_pred HH-HHHHhhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHH-HHHH
Q 045105 472 TC-MVDLLSRAGELGEAYEFIKKIPM------APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM-LANL 543 (601)
Q Consensus 472 ~~-l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 543 (601)
.. -.+.+...|+.++|++.|++.-. ......+--+...+...+++++|.+.+.++.+.+.-....|.. .+.+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 32 23445667788888888876521 1233445556666777788888888888888876533344443 3345
Q ss_pred HHHcCCH-------HHHHHHHHHHh
Q 045105 544 FAYAGRW-------SDLARTRQKMK 561 (601)
Q Consensus 544 ~~~~g~~-------~~A~~~l~~~~ 561 (601)
+...|+. ++|.+++++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 5667777 77777777663
No 262
>PRK15331 chaperone protein SicA; Provisional
Probab=93.93 E-value=1.5 Score=36.03 Aligned_cols=85 Identities=7% Similarity=0.023 Sum_probs=46.7
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
+...|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|...|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 445667777777776665532 12222334444555556677777777644333321 2233333455666677777777
Q ss_pred HHHHHhC
Q 045105 488 YEFIKKI 494 (601)
Q Consensus 488 ~~~~~~~ 494 (601)
..-|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 7666655
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.91 E-value=2.5 Score=33.13 Aligned_cols=115 Identities=6% Similarity=0.012 Sum_probs=49.0
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-C--------------------ChhhHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-P--------------------DLVSQNA 403 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~--------------------~~~~~~~ 403 (601)
.|.+++..++..+...+. +..-+|.+|.-....-+-+-....++.+.+ . +......
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 467777777777766543 334445554444433444444444444331 1 1112233
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD 463 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (601)
.+..+..+|+-++-..++.++.+.+ +|++.....+..||.+.|+..++.+++...-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444444455444444444444322 4444444444555555555555555554444444
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.87 E-value=2.6 Score=40.77 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 498 PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
....+|..+...+++.|.++.|...+.++.+..+. .+.+...-+..+...|+..+|...+++..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999986532 567788889999999999999999998877433
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.66 E-value=4.1 Score=40.48 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=59.0
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHH
Q 045105 375 DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 375 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 454 (601)
+...++|+++.|.++.+... +...|..|......+|+++-|.+.|++... +..|+--|...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34455677777766665554 445677777777777777777777666543 3344444555666655555
Q ss_pred HHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC
Q 045105 455 FFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495 (601)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (601)
+.+.....| -++.-..++.-.|+.++..+++.+.+
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 554444433 23444455555677777777766655
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.65 E-value=0.57 Score=42.53 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=54.4
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCCHhhHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA-----EGLEPNARTLSS 99 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 99 (601)
++..++..+...|+.+.+.+.++.+.. ..+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455566667777777777777777777 5667777788888888888888888777777655 366666665555
Q ss_pred HHHH
Q 045105 100 VLPA 103 (601)
Q Consensus 100 ll~~ 103 (601)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.56 E-value=14 Score=40.57 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=35.7
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcC--chHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPS--LKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 517 (601)
+.+|...|+|.+|+.+...+.. .-+ ..+-..|+.-+...++.-+|-+++.+....|... +..+++...++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHH
Confidence 4455555555555555433211 111 1112344455555666666666655554233322 22344444555
Q ss_pred HHHHHHHHH
Q 045105 518 FGQIAADRL 526 (601)
Q Consensus 518 ~a~~~~~~~ 526 (601)
+|.++....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 555554443
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.51 E-value=3.8 Score=34.08 Aligned_cols=30 Identities=3% Similarity=0.063 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCc
Q 045105 81 MLFRMQAEGLEPNARTLSSVLPACARLQKL 110 (601)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (601)
.++.+.+.+++|+...+..+++.+.+.|.+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 334444445555555555555555555543
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.40 E-value=0.17 Score=29.52 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 536 NYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
++..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998854
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.35 E-value=6.7 Score=36.39 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHhh
Q 045105 276 YCRYQDLVAAQMAFD 290 (601)
Q Consensus 276 ~~~~g~~~~a~~~~~ 290 (601)
..+.++++.|.++|+
T Consensus 256 ~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHhhcCHHHHHHHHH
Confidence 344566666666554
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.29 E-value=3.2 Score=41.82 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=114.4
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHHh----cCCcc
Q 045105 42 ALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNA-----RTLSSVLPACAR----LQKLS 111 (601)
Q Consensus 42 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~ 111 (601)
...+|.-+.. ..||. ...++...+-.||-+.+++++.+-.+.+ +.-.. -+|+.++..++. ..+.+
T Consensus 176 G~G~f~L~lS--lLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLS--LLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHH--hCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 4556666666 44444 4567777788899999988888766542 22111 234444444443 34567
Q ss_pred hHHHHHHHHHHhcCCCchHHHHH-HHHHHHhcCCHHHHHHHHhhcCCC-------CchhHHHHHHHHHhcCCHHHHHHHH
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNG-LVDVYRRCGDMLSALKIFSKFSIK-------NEVSCNTIIVGYCENGNVAEARELF 183 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~ 183 (601)
.+.++++.+.+. -|+...|.. -.+.+...|++++|++.|++.... ....+--+...+.-.++|++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 788888888875 466555543 345666789999999999975531 2334556677788899999999999
Q ss_pred HHHHhcCCCCCeeehHHHH-HHHHhCCCh-------hHHHHHHHHHHH
Q 045105 184 DQMEHLGVQRGIISWNSMI-SGYVDNSLY-------DEAFSMFRDLLM 223 (601)
Q Consensus 184 ~~m~~~g~~~~~~~~~~li-~~~~~~~~~-------~~a~~~~~~~~~ 223 (601)
..+.+.. .-+...|.-+. .++...++. ++|.++|.+...
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9998753 23333444333 344556766 889999988754
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.28 E-value=1.3 Score=43.12 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHh-cCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCC--CCC--HHHHHHHHHHHH
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAY-YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPM--APD--SVMWGALLGGCV 511 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~ 511 (601)
..+..++.+.|+.++|.+.++++.+ ........+...|++++...+.+.++..++.+... -|. ..+|++.+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3445555566777777777744433 22222233555667777777777777777666531 132 234444443333
Q ss_pred hcCC---------------hhHHHHHHHHHHhcCCC
Q 045105 512 SHGN---------------LEFGQIAADRLIELEPN 532 (601)
Q Consensus 512 ~~g~---------------~~~a~~~~~~~~~~~p~ 532 (601)
..|| -..|.+++.++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3333 12356778888887764
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.15 E-value=1.9 Score=40.11 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCC---c--cHHhHHHHHHHHhccCchHHHHHHHHH----HHhcCCCcCchHH
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFR---P--DHISFLSALSACVHAGSIKTGSEFFDL----MAYYDVKPSLKHY 471 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~ 471 (601)
..++..++...+.++++++.|+...+---. | .-..+..|-..|.+..++++|.-+... ....++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344566677778899999999887652211 1 123677888888899999988766522 2233322211222
Q ss_pred H-----HHHHHhhhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 472 T-----CMVDLLSRAGELGEAYEFIKKI-------PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 472 ~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
. .+.-+|-..|+..+|.+..++. |..+ .......+...|...||.|.|..-|+.+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2 2344566778888887777665 3222 3456677788899999999999988887764
No 274
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.00 E-value=0.27 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=14.6
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSS 51 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~ 51 (601)
+..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=5.9 Score=34.86 Aligned_cols=206 Identities=12% Similarity=0.038 Sum_probs=88.5
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
.|..-..+|....++++|...+.+..+ +..-|...|+. ...++.|.-+.++|.+. .--...|+-....|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 455555666667777777776666554 22222222221 12233344444444331 11122344444555
Q ss_pred HhcCCcchHHHHHHHHHHh--cCCCch--HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 045105 105 ARLQKLSLGKEFHGYITRN--GFMSNP--FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~--g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (601)
...|.++.|-..++..-+. ++.|+. ..|..-+...-..++...|.++ +..+-+.+++...+++|-
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------YGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------HHHhhhHhhhhHHhhHHH
Confidence 5556665555555444321 122221 1222222222222222222222 333445566666666554
Q ss_pred HHHHHHHhc----CCCCCe-eehHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCChhhHHHHHHHhcccCCHHHHHHH
Q 045105 181 ELFDQMEHL----GVQRGI-ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGI--EPTSFTFGSVLIACADMNSLRKGKEI 253 (601)
Q Consensus 181 ~~~~~m~~~----g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~ 253 (601)
..+..-... .-.++. ..|...|-.+.-..++..|..++++-.+..+. .-+..+...||.+| ..|+.+.+.++
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 444332211 001111 22444555566666777777777664331111 11334455555544 34455554443
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.89 E-value=3.5 Score=34.08 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=55.5
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchH-HHHHH--HHHHHhcCCH
Q 045105 70 TQNGYDEEAIGMLFRMQAEGLEPNAR-TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPF-VVNGL--VDVYRRCGDM 145 (601)
Q Consensus 70 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l--~~~~~~~~~~ 145 (601)
.+.+..++|+.-|..+.+.|..--.. ..-.........|+...|...|++.-+....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34445555555555555543221100 00011112334455555555565555443333222 11111 1123345666
Q ss_pred HHHHHHHhhcCCC-C---chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 146 LSALKIFSKFSIK-N---EVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 146 ~~a~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
+......+-+..+ + ...-.+|.-+-.+.|++.+|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666655555422 1 11234555566677777777777777654
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=4.9 Score=33.25 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=66.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCeeehHHH-----HHHHHhCCChhHHHHHHHHHHHcCCCCCChh-hHHHHHH--Hhc
Q 045105 171 CENGNVAEARELFDQMEHLGVQRGIISWNSM-----ISGYVDNSLYDEAFSMFRDLLMRDGIEPTSF-TFGSVLI--ACA 242 (601)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~--~~~ 242 (601)
.+.+..++|+.-|.++.+.|.. .|-.| .......|+-..|...|.++-. ..-.|... -...+=. .+.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~-dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAA-DTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhc-cCCCcchhhHHHHHHHHHHHh
Confidence 4556667777777777655422 22222 1234566777777777777655 22333322 1112211 244
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 243 DMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
..|.++....-.+.+-..+-+.....-.+|--+-.+.|++.+|.+.|.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 567777766666665555545555555667777778888888888888
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=6.5 Score=34.62 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCC--hhhHHHHHHHHHHc
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD--LVSQNAMLTAYAMH 411 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~ll~~~~~~ 411 (601)
.|.....+|....++++|..-+.+..+. ...+...|. ....++.|..+.+++.+.+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555666777788888887766655531 111111111 1223445555555555322 23456666777788
Q ss_pred CChhhHHHHHHHHHH--CCCCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 412 GHGKEGIAHFRRILA--SGFRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~--~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
|.++.|-..+++.-+ ..+.|+.. .|..-+......++...|.. .+....+.|.+..++.+|
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHhhHH
Confidence 877776666655432 12455432 23333333333333333333 344455677777888887
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 488 YEFIKKIP-------MAPDS-VMWGALLGGCVSHGNLEFGQIAADRLIEL----EPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 488 ~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
-..+.+-+ .-++. ..+.+.+-.+....|+..|+..++.-.+. .|.+..+...|+.+| ..|+.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 66665542 11222 23444555566667888898888876664 455777777887764 6788888887
Q ss_pred HHH
Q 045105 556 TRQ 558 (601)
Q Consensus 556 ~l~ 558 (601)
++.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 643
No 279
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.53 E-value=4.5 Score=32.48 Aligned_cols=79 Identities=14% Similarity=0.008 Sum_probs=51.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETP-NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARL 107 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 107 (601)
-.....+.|++++|++.|+.+.......+ ...+.-.|+.+|.+++++++|...+++.++....-...-|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 44455667888888888888887432211 23455667888888888888888888887763322234566666665543
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.49 E-value=5 Score=39.39 Aligned_cols=63 Identities=17% Similarity=0.039 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 500 SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN--NTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
..+-..+...+.+.|+.++|++.++.+.+..|. +..+...|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344445666666777777788887777776664 345777777777888888888777776543
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.41 E-value=7.5 Score=34.51 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=141.4
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHh-CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHH-
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRC-GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--PDL-VSQNAMLT- 406 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~- 406 (601)
...+......+...+....+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 445566667777788888888887776653 3344555666677777788888899998887764 222 22333333
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCc----cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRP----DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG 482 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 482 (601)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..............+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78899999999999999966 343 233444445556778899999999966555432214567788888899999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 483 ELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999998877 33454 445555555555777899999999999999885
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.40 E-value=5.7 Score=33.09 Aligned_cols=134 Identities=11% Similarity=0.093 Sum_probs=89.1
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCC
Q 045105 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENG--NVAEARELFDQMEHLGVQ 192 (601)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~ 192 (601)
+.+..+.+.+++|+...+..+++.+.+.|.+.....++.--.-+|.......+-.+.... -.+-|++.+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-----
Confidence 445566678899999999999999999999999998888776666665554443333221 1233444444443
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcC
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALG 261 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (601)
..+..+++.+...|++-+|+.+.++... .+......++.+..+.++...-..+++.....+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1356678889999999999999977422 122333556666666666666666665555443
No 283
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=15 Score=38.02 Aligned_cols=137 Identities=7% Similarity=-0.074 Sum_probs=82.3
Q ss_pred HhcCCCchHHHH-----HHHHHHHhcCCHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCH--HHHHHHHHHHHhcCC
Q 045105 122 RNGFMSNPFVVN-----GLVDVYRRCGDMLSALKIFSKFSIKN---EVSCNTIIVGYCENGNV--AEARELFDQMEHLGV 191 (601)
Q Consensus 122 ~~g~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~ 191 (601)
.-|++.+..-|. .++.-+...+.+..|.++-+.+..|. ...|......+++..+. +++.+..++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 456666665554 45666777888999999988888775 44555555666655332 233333333222222
Q ss_pred CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CChhhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 045105 192 QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIE---PTSFTFGSVLIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 192 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (601)
-+..+|..+.+.....|+.+-|..+++.-....... .+..-+...+.-+...|+.+....++-.+..
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 455678888888888999999988886422211111 1223345555566666777766666655543
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.29 E-value=9.7 Score=35.52 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHh--cC----ChHHHHHHHhcCCC-------CChhhHHHHHHHHHHcCC-
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAK--CG----SLKHARLAYKRIST-------PDLVSQNAMLTAYAMHGH- 413 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~-------~~~~~~~~ll~~~~~~~~- 413 (601)
++....+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++ ++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777788888887777666543333222 11 24567778887773 444455555443 2222
Q ss_pred ---hhhHHHHHHHHHHCCCCccHH--hHHHHHHHHhccCc--hHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 414 ---GKEGIAHFRRILASGFRPDHI--SFLSALSACVHAGS--IKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 414 ---~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
.+.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 456778888888888776543 33333333322222 44778888888999999988887765433
No 285
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.10 E-value=0.22 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHH
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888899998888875
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.99 E-value=0.02 Score=46.94 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 417 (601)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666777777888888888888766666677777888888877766776666663322 2222334444444444444
Q ss_pred HHHHHH
Q 045105 418 IAHFRR 423 (601)
Q Consensus 418 ~~~~~~ 423 (601)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444433
No 287
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.90 E-value=0.27 Score=28.02 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..+..++.++...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999987654
No 288
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.89 E-value=34 Score=40.89 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 500 SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..+|-...+..+..|.++.|...+-.+.+.. -+.++...+..++..|+...|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4578888888999999999999998888876 578899999999999999999999998875543
No 289
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.87 E-value=19 Score=37.97 Aligned_cols=116 Identities=9% Similarity=0.058 Sum_probs=62.4
Q ss_pred cCChhhHHHHHHHHHHCC-CCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 411 HGHGKEGIAHFRRILASG-FRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 411 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
..+.+.|...+....... +.+... ....+.......+..+++...+...... ..+......-++...+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 345678888888764443 333322 3333333333332245565555432221 22444455555566678888888
Q ss_pred HHHHHhCCCC-CCHHHH-HHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 488 YEFIKKIPMA-PDSVMW-GALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 488 ~~~~~~~~~~-~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
...+..|+.. -+..-| -=+..++...|+.++|...|+++..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888887411 111112 2244455557888888888888743
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.76 E-value=5.8 Score=32.60 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=54.4
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCc
Q 045105 31 TACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKL 110 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (601)
..-.+.++.+++..+++-++-.....|...++... .+...|+|.+|+.+|+++.+. .|....-..|+..|....+-
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCC
Confidence 34456789999999999988753334444444433 456789999999999998765 23333334444444333222
Q ss_pred chHHHHHHHHHHhcCCCc
Q 045105 111 SLGKEFHGYITRNGFMSN 128 (601)
Q Consensus 111 ~~a~~~~~~~~~~g~~~~ 128 (601)
..=...-+++.+.+..|+
T Consensus 94 ~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPD 111 (160)
T ss_pred hHHHHHHHHHHhcCCChH
Confidence 222223334555543443
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.75 E-value=0.33 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
+|..+...|...|++++|.+.+++..+++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555566666666666666666666665
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.60 E-value=0.34 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
+|..|...|.+.|++++|+++++++..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667788888888888888888885543
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.06 E-value=9.5 Score=32.96 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHH--HHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL--SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMV 475 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 475 (601)
+..||-+.--+...|+++.|.+.|+...+. .|.- .|..+= -++--.|++..|.+-+...-+.. |+.. |.+|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D--~~DP-fR~L- 171 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDD--PNDP-FRSL- 171 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcC--CCCh-HHHH-
Confidence 356777777777888888888888888774 3321 122222 22334677777777663322221 2211 2222
Q ss_pred HHhh--hcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------CCchHHHHHHHHH
Q 045105 476 DLLS--RAGELGEAYEFI-KKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN-------NTGNYVMLANLFA 545 (601)
Q Consensus 476 ~~~~--~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~ 545 (601)
..|. ..-++.+|..-+ ++.. ..|..-|...+-.+.- |+. ..+.+++++.+-..+ -.++|..|+.-+.
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2222 334566665443 4442 3444445544444332 111 112333333333222 2457788888888
Q ss_pred HcCCHHHHHHHHHHHhhc
Q 045105 546 YAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~ 563 (601)
..|+.++|..+++-....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 888888888888765443
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.97 E-value=0.39 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.+|..++.+|...|++++|...+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999877653
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.92 E-value=0.38 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 537 YVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+..++.++.+.|++++|.+.++++.+.-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4556666666666666666666665544
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.65 E-value=2.4 Score=31.00 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=50.1
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-CCCCchhHHhHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC-GYDSDVHIGTALV 374 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 374 (601)
.|+...|..-.-+..+....+.|++......+++|.+.+++..|.++++-++.. |. +..+|..++
T Consensus 18 ~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 18 RPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 677777877777777778888999999999999999999999999999877633 32 334555544
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.59 E-value=3.4 Score=35.10 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhcCCC---cCchHHHHH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYYDVK---PSLKHYTCM 474 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l 474 (601)
.+..+..-|++.|+.+.|++.|.++.+....|... .+..+|+.....+++..+..........--. ++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666777777777777777777665555443 4556666667777777766666443332111 111111111
Q ss_pred HHH--hhhcCChHHHHHHHHhC
Q 045105 475 VDL--LSRAGELGEAYEFIKKI 494 (601)
Q Consensus 475 ~~~--~~~~g~~~~A~~~~~~~ 494 (601)
..+ +...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 122 23467777777777655
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.74 E-value=0.48 Score=38.74 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHH
Q 045105 100 VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 179 (601)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666666666666655555566666777777776666666666663221 2234455555555555555
Q ss_pred HHHHHHH
Q 045105 180 RELFDQM 186 (601)
Q Consensus 180 ~~~~~~m 186 (601)
.-++..+
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
No 299
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.57 E-value=25 Score=35.52 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=23.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
.++.+.|..++.++.+..|++...|..+.......+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 456667777777777777766666666666655544
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.51 E-value=18 Score=33.63 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCchh---hHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC
Q 045105 334 TVGIILSACSSLATME---RGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS 394 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 394 (601)
++..++.++...+..+ +|..+++.+..... -.+.++..-+..+.+.++.+.+.+.+.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4555666666655443 34445544533321 123333334444444555555555555554
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.34 E-value=3.7 Score=30.47 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=45.5
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...|..-.-+..+....+.|++......+++|.+.+++..|.++++-++..-- +...+|..+++
T Consensus 21 ~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 21 RPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp -TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred CccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 57777777777777777888899999999999999999999999999988775422 22336665554
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.31 E-value=22 Score=34.37 Aligned_cols=150 Identities=8% Similarity=-0.095 Sum_probs=79.4
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc---cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC--chH
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP---DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS--LKH 470 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 470 (601)
....+|..+...+.+.|+++.|...+.++...+..+ .+.....-...+-..|+..+|...++......+..+ ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 444567777888888888888888888887643211 222333334555667888888888855544222222 111
Q ss_pred HHHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEF-IKKIPMAPDSVMWGALLGGCVSH------GNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
...+...+.. ..+..... ........-..++..+...+... ++.+.+...+..+.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000112222222233333 778889999999999999888888888877
Q ss_pred HHHc
Q 045105 544 FAYA 547 (601)
Q Consensus 544 ~~~~ 547 (601)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7543
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.31 E-value=39 Score=37.34 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=67.5
Q ss_pred CchhHHhHHH----HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHH
Q 045105 365 SDVHIGTALV----DMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLS 438 (601)
Q Consensus 365 ~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ 438 (601)
|+...+..+. ..+...+.+++|.-.|+...+. .-.+.+|...|+|.+|+.+..++.. .-+.. +-..
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl-----ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL-----EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-----HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 4444444333 3334456666666666554421 2235667777777777777666543 11222 2245
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (601)
|..-+...+++-+|-++...... .| .-.+..|+++..|++|+.+.....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 66777788888888888754322 12 334556778888888888877654
No 304
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=23 Score=38.17 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=58.4
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcC--CCCCChhhHHHHHHHHhhcCCh--HHHHHHHHHHHHcCCCCCHhhHHH-
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLD--NETPNLVSWSAVIGGFTQNGYD--EEAIGMLFRMQAEGLEPNARTLSS- 99 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~- 99 (601)
-|..|+..|...|++++|+++|....... ...--...+..++..+.+.+.. +-.++.-.........-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46677778888888888888888776521 1111122333445554444444 444444444333211100011111
Q ss_pred -----------HHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 100 -----------VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 100 -----------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
.+-.+......+-+...++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111233344555566666666655555556666666666654
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.64 E-value=0.88 Score=27.34 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.++..++.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 36788999999999999999999887643
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.56 E-value=0.97 Score=41.47 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=64.9
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCc-CchHHHHHHHHhhhcCChHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPD---SVMWGALLGGCVSHGN 515 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 515 (601)
.+-|.+.|.+++|+..|..-. .+.| ++.++..-..+|.+..++..|+.-...+- ..| ...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHhh
Confidence 367889999999999995422 2344 67777777788999988887776665542 222 2234444444445688
Q ss_pred hhHHHHHHHHHHhcCCCCCc
Q 045105 516 LEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 516 ~~~a~~~~~~~~~~~p~~~~ 535 (601)
..+|.+-++..+++.|++-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88999999999999996433
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.33 E-value=3 Score=30.57 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 494 IPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
+.+-|++.+..+.+.+|++.+|+..|.++++-......++...|-.++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 356789999999999999999999999999988866554444555444
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.26 E-value=7.8 Score=32.96 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=58.1
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHH-----hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHI-----SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLL 478 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 478 (601)
..-+...|++++|..-|.+.++.. ++... .|..-..++.+.+.++.|+.-.....+.+ |+ ......-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 344677888888888888888863 33222 34444456677888888887775444433 32 11222223467
Q ss_pred hhcCChHHHHHHHHhC-CCCCCHH
Q 045105 479 SRAGELGEAYEFIKKI-PMAPDSV 501 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~-~~~~~~~ 501 (601)
.+..++++|++-++++ ...|...
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchH
Confidence 7778888888888777 3445443
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.23 E-value=1 Score=27.68 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|+.+|...|+.+.|++++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 568899999999999999999988655
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.14 E-value=3.4 Score=30.67 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=36.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 493 KIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+.....+....|..++.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 33467999999999999999999999999999998886655446665553
No 311
>PRK10941 hypothetical protein; Provisional
Probab=87.82 E-value=2.7 Score=38.42 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..+.+-.+|.+.++++.|.++.+.+..+.|+++.-+..-+-+|.+.|.+..|..-++...+.-+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3455667788889999999999999999998888888888889999999999888887765543
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.72 E-value=1.2 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999886543
No 313
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.56 E-value=23 Score=32.47 Aligned_cols=134 Identities=9% Similarity=0.098 Sum_probs=84.0
Q ss_pred CCHHHHHHHHhhcC-----CCCchhHHHHHHHHHhc-C-CHHHHHHHHHHHHh-cCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 143 GDMLSALKIFSKFS-----IKNEVSCNTIIVGYCEN-G-NVAEARELFDQMEH-LGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 143 ~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
..+.+|+.+|+... -.|..+...+++..... + ....--++.+-+.. .|-.++..+-..++..+++.++|..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34566777776322 23555566666665552 2 22223344444432 23467777788888888999999988
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHH-----HHHcCCCCchhHHHHHHHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHAL-----AIALGLQSDTFVGGALVEMY 276 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~ 276 (601)
++++.......+..-|...|...|+.....|+..-..++..+ +.+.++..+......+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888887665335556777888888888888888777776654 33455555555555544443
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.55 E-value=6.3 Score=33.50 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=41.0
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 045105 60 VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA--RTLSSVLPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 60 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (601)
..+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|+.....+++..+....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666777777777777777777777765433332 3455666666667777776666655543
No 315
>PRK09687 putative lyase; Provisional
Probab=87.41 E-value=24 Score=32.69 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=143.3
Q ss_pred HHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCCh----HHHHHHHHHHHHcC
Q 045105 14 VFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYD----EEAIGMLFRMQAEG 89 (601)
Q Consensus 14 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~ 89 (601)
+++.+.++|.......+.++...|. +++...+..+.+ .+|...-...+.++++.|+. .++...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence 3344445677777777777777765 344444444433 24566666677777777764 4577777776443
Q ss_pred CCCCHhhHHHHHHHHHhcCCcc--hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHH
Q 045105 90 LEPNARTLSSVLPACARLQKLS--LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTII 167 (601)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 167 (601)
.|+...-...+.++...+... ...++.+.+...-..++..+-...+.++++.++.+....+..-+..+|...-...+
T Consensus 102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~ 180 (280)
T PRK09687 102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_pred -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 566666666666665543221 12233333433333456667777788888888765555555555666777777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCC
Q 045105 168 VGYCENG-NVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNS 246 (601)
Q Consensus 168 ~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 246 (601)
.++.+.+ +...+...+..+.. .++..+-...+.++.+.++ ..++..+-+..+ .+ + .....+.++...|+
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~-~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELK-KG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHc-CC---c--hHHHHHHHHHhcCC
Confidence 7777653 24456666666653 4566667777888888887 456666666555 22 2 23456677777777
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 045105 247 LRKGKEIHALAIALGLQSDTFVGGALVEM 275 (601)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 275 (601)
. .+...+..+.+.. +|..+....+.+
T Consensus 251 ~-~a~p~L~~l~~~~--~d~~v~~~a~~a 276 (280)
T PRK09687 251 K-TLLPVLDTLLYKF--DDNEIITKAIDK 276 (280)
T ss_pred H-hHHHHHHHHHhhC--CChhHHHHHHHH
Confidence 5 4666666665432 254444444433
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.38 E-value=18 Score=31.30 Aligned_cols=30 Identities=13% Similarity=-0.098 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 59 LVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 59 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
...||.|.-.+...|+++.|.+.|+...+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 455666666666677777777777766654
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.27 E-value=3.8 Score=35.07 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=52.9
Q ss_pred hhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCHHH
Q 045105 479 SRAGELGEAYEFIKKIPMAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN----NTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 479 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 552 (601)
.+.|+ ++|.+.|-++.-.| +.+.....+..|....|.+++++++-++.++.+. |+.++..|+.++.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 56777776663233 3344444444555567899999999999987433 68899999999999999998
Q ss_pred HH
Q 045105 553 LA 554 (601)
Q Consensus 553 A~ 554 (601)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.15 E-value=1.1 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=23.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.+...+.+.|++++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677889999999999999998885
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.03 E-value=2.2 Score=31.33 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..+++..+.+|+|......++..+...|++++|.+.+-++..+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34445555556555566666666666666666666555555443
No 320
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.88 E-value=0.62 Score=26.71 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCCChhhHHHHHHHHhhcCChHHHH
Q 045105 54 NETPNLVSWSAVIGGFTQNGYDEEAI 79 (601)
Q Consensus 54 ~~~~~~~~~~~li~~~~~~~~~~~a~ 79 (601)
..|-|..+|+.+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34556667777777777777776664
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.26 E-value=29 Score=32.44 Aligned_cols=88 Identities=9% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh--CCC----hhHHHHHHHHHHHcCCCC--CChhhHHHHHHHhcccCC-
Q 045105 176 VAEARELFDQMEHLGVQRGIISWNSMISGYVD--NSL----YDEAFSMFRDLLMRDGIE--PTSFTFGSVLIACADMNS- 246 (601)
Q Consensus 176 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~- 246 (601)
+++...+++.|.+.|+.-+..+|-+....... ..+ ..++..+|+.|.+.+..- ++...+..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788999999998888776653333222 222 557889999998865543 445556666544 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCc
Q 045105 247 ---LRKGKEIHALAIALGLQSD 265 (601)
Q Consensus 247 ---~~~a~~~~~~~~~~~~~~~ 265 (601)
.+.++.+|+.+.+.|+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 3456667777777676544
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.87 E-value=17 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=41.1
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG 89 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 89 (601)
-...++++++..+++.|+-.....+...++... .+...|+|.+|..+|+++.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 344789999999999988754444455555544 4567899999999999998764
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.86 E-value=6.6 Score=35.95 Aligned_cols=97 Identities=14% Similarity=0.241 Sum_probs=66.6
Q ss_pred hCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCC--------hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc
Q 045105 361 CGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPD--------LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP 431 (601)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 431 (601)
.|.+.+..+...++..-....+++++...+-++. +|+ ..+|-.++ -.=++++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 3555555566666666666777888877776665 222 22222222 2335678888888888889999
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHH-HHHHh
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFF-DLMAY 461 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~ 461 (601)
|.++++.+|+.+.+.+++..|.++. ..|.+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888877 44333
No 324
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.50 E-value=3.4 Score=36.17 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=51.2
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 480 RAGELGEAYEFIKKI-PMAPDSVMW-GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
...++..|+.-+.+. .+.|...+| ..=+..+.+..+++.+.+-..++.++.|+.....+.++..+.....+++|...|
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 334455555544433 445655433 223334455667777777777777777776677777777777777777777777
Q ss_pred HHHh
Q 045105 558 QKMK 561 (601)
Q Consensus 558 ~~~~ 561 (601)
.+..
T Consensus 102 qra~ 105 (284)
T KOG4642|consen 102 QRAY 105 (284)
T ss_pred HHHH
Confidence 7663
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.44 E-value=8 Score=35.43 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDN--ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
-..++..-....+++.++..+-.++.... ..|+... ...++.+.+ -++++++.++..-.+.|+-||..++..+|..
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~ 144 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDS 144 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHH
Confidence 33334444445556666666655544210 0111111 122222222 2455666666666666666666666666666
Q ss_pred HHhcCCcchHHHHHHHHHHh
Q 045105 104 CARLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~ 123 (601)
+.+.+++..|.++.-+|...
T Consensus 145 flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 145 FLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHhcccHHHHHHHHHHHHHH
Confidence 66666666666665555544
No 326
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.42 E-value=27 Score=31.31 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC
Q 045105 166 IIVGYCENGNVAEARELFDQMEHLGV--QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT 230 (601)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 230 (601)
-+..-.+.|++++|.+.|+.+....+ +-...+--.++.++.+.++++.|+..+++.....+-.||
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 34445566667777777666664421 112223334455566666666666666666654444444
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.06 E-value=6.9 Score=33.80 Aligned_cols=77 Identities=8% Similarity=0.005 Sum_probs=53.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc--CCCCCHhhHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE--GLEPNARTLSSVLP 102 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~ 102 (601)
+.+..++.+.+.++..+++...+.-.+ ..|-|...-..+++.|+-.|+|++|..-++-.-+. ...+-..+|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345566778888888888888877665 45567777788888888888888887766665443 22344456666665
Q ss_pred H
Q 045105 103 A 103 (601)
Q Consensus 103 ~ 103 (601)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.84 E-value=24 Score=30.16 Aligned_cols=87 Identities=9% Similarity=0.081 Sum_probs=39.3
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCcCchHHHH-----HHHHhhhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 045105 441 SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTC-----MVDLLSRAGELGEAYEFIKKIPMAPD--SVMWGALLGGCVSH 513 (601)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~ 513 (601)
..+...+++++|..-++..... |....+.. |.+.....|.+++|+..++... .++ ......-...+...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHc
Confidence 3445555666665555433221 11112222 2333445555566655555543 221 12222223345555
Q ss_pred CChhHHHHHHHHHHhcCC
Q 045105 514 GNLEFGQIAADRLIELEP 531 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p 531 (601)
||.++|...|+++.+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 555555555555555543
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.53 E-value=2.3 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
.+++.+...|...|++++|..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666777777777777777777777654
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.45 E-value=26 Score=35.49 Aligned_cols=44 Identities=20% Similarity=0.130 Sum_probs=21.2
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+.|+++.|.++..+. .+..-|..|.++....|++..|.+-|.+.
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 345555555544221 12334555555555555555555555443
No 331
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.43 E-value=2.4 Score=27.31 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
.+.-++.+.|+++.|.+..+.+.+++|+|..+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3556788999999999999999999997765443
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.23 E-value=59 Score=34.23 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCC---ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETP---NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACAR 106 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (601)
+.-+.+.+.+++|+...+.... ..| ....+...|..+.-.|++++|-...-.|... +..-|......+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 4567778889999988877554 223 3456778888888889998888888777643 44455555555555
Q ss_pred cCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 107 LQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 107 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
.++... +...+.......++.+|..++..+..
T Consensus 436 ~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 444332 22222222223345566666665555
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.21 E-value=29 Score=30.61 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=13.5
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 045105 514 GNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~ 532 (601)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 5666677777777777775
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.62 E-value=68 Score=34.44 Aligned_cols=216 Identities=14% Similarity=0.015 Sum_probs=117.0
Q ss_pred HhcCCCchhhHHHHHHHHHHhCCCCchh-------HHhHHHH-HHHhcCChHHHHHHHhcCC--------CCChhhHHHH
Q 045105 341 ACSSLATMERGKQVHAYAIRCGYDSDVH-------IGTALVD-MYAKCGSLKHARLAYKRIS--------TPDLVSQNAM 404 (601)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l 404 (601)
......++.+|..+..++...-..|+.. .++.+-. .....|++++|.++-+... .+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456678888888888877653333221 2222221 2234688888877776543 2555677778
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHH---hHHHHH--HHHhccCch--HHHHHHHHHHHhcCC--C----cCchHH
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHI---SFLSAL--SACVHAGSI--KTGSEFFDLMAYYDV--K----PSLKHY 471 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~--~~~~~~g~~--~~a~~~~~~~~~~~~--~----~~~~~~ 471 (601)
..+..-.|++++|..+.++..+.--.-+.. .+..+. ..+...|+. .+....+........ . +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999999888766542222332 222222 234566633 333333432222111 1 112344
Q ss_pred HHHHHHhhhcCChHHHHHH----HHhCC-CCCCHH--HH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CchHH---
Q 045105 472 TCMVDLLSRAGELGEAYEF----IKKIP-MAPDSV--MW--GALLGGCVSHGNLEFGQIAADRLIELEPNN-TGNYV--- 538 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~----~~~~~-~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~--- 538 (601)
..+..++.+ .+.+..- +.-.. ..|... .. ..|+......||.++|...+..+..+--+. +..+.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 455555554 3333222 21111 123222 22 245666778899999999998888763221 22222
Q ss_pred -HHH--HHHHHcCCHHHHHHHHHH
Q 045105 539 -MLA--NLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 539 -~l~--~~~~~~g~~~~A~~~l~~ 559 (601)
..+ ......|+...|...+.+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 222 233467999888887665
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.78 E-value=4.1 Score=35.12 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANL 543 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~ 543 (601)
|.+.-+..+.+.+.+.+|+...+.- ..+| |..+-..++..++-.|++++|..-++.+-++.|++. ..|.+++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455677888899999999887654 4566 666777888999999999999999999999999754 355555544
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.68 E-value=2.2 Score=39.33 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=74.2
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH
Q 045105 476 DLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (601)
+.|.+.|.+++|+..+.+. ...| |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5688999999999999765 5667 8888888899999999999999999999999765666777777777788888888
Q ss_pred HHHHHHHhhcC
Q 045105 554 ARTRQKMKDRR 564 (601)
Q Consensus 554 ~~~l~~~~~~~ 564 (601)
.+-.+.....-
T Consensus 185 KkD~E~vL~LE 195 (536)
T KOG4648|consen 185 KKDCETVLALE 195 (536)
T ss_pred HHhHHHHHhhC
Confidence 88877665543
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.47 E-value=34 Score=33.11 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=50.9
Q ss_pred CHHHHHHH---HHHHHhcCChhHHHHHHHHHHhcCCC-CCchHHHHHHHH-HHcCCHHHHHHHHHHHhh
Q 045105 499 DSVMWGAL---LGGCVSHGNLEFGQIAADRLIELEPN-NTGNYVMLANLF-AYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 499 ~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~l~~~~~ 562 (601)
|...|.++ +..+.+.|-+..|.++.+.+..++|. ||......++.| .++++++-..++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555554 45577899999999999999999998 887766666666 578999999999887765
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.51 E-value=3.1 Score=22.48 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 536 NYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.+..++.++...|++++|...+++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.96 E-value=80 Score=33.41 Aligned_cols=150 Identities=13% Similarity=0.022 Sum_probs=91.4
Q ss_pred CCCchhHHHHHhhCCC----CCcc-----chHHHHHHHHhcCChHHHHHHHHHhhhcCC---CCCChhhHHHH-HHHHhh
Q 045105 5 CGSLDDAKKVFKMMPE----RDCV-----SWNSVVTACAANGLVLEALECLERMSSLDN---ETPNLVSWSAV-IGGFTQ 71 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~----~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~~~l-i~~~~~ 71 (601)
..+++.|+..+++... ++.. +...++..+.+.+... |...++...+... ..+-...|..+ +..+..
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 4678999999988752 2221 2334556666666655 9888888766421 12233444444 333334
Q ss_pred cCChHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHH--hcCCcchHHHHHHHHHHhcC---------CCchHHHHHHHH
Q 045105 72 NGYDEEAIGMLFRMQAEG---LEPNARTLSSVLPACA--RLQKLSLGKEFHGYITRNGF---------MSNPFVVNGLVD 137 (601)
Q Consensus 72 ~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~l~~ 137 (601)
.+++..|.+.++.+.... ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 479999999998886542 3455556666666654 34556677777776644332 335567777776
Q ss_pred HHH--hcCCHHHHHHHHhhc
Q 045105 138 VYR--RCGDMLSALKIFSKF 155 (601)
Q Consensus 138 ~~~--~~~~~~~a~~~~~~~ 155 (601)
.++ ..|+++.+...++++
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 654 467777777665544
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.69 E-value=13 Score=37.51 Aligned_cols=148 Identities=18% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFR 84 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 84 (601)
+|+++.|..++..++++ .-+.+...+.++|-.++|+++-.. |+. - .....+.|+.+.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D--------~d~-r----Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTD--------PDQ-R----FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCC--------hhh-h----hhhhhhcCcHHHHHHHHHh
Confidence 46666666666665532 234455556666666666644221 110 1 1223445666666655544
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHH
Q 045105 85 MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCN 164 (601)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 164 (601)
.. +..-|..|-++....+++..|.+.|...... ..|+-.+...|+.+....+-...... ...|
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N 725 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ--GKNN 725 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh--cccc
Confidence 32 3445666666666666666666666655432 23444444444444332222222110 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 045105 165 TIIVGYCENGNVAEARELFDQ 185 (601)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~ 185 (601)
....++...|+++++.+++..
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 223345556777777666644
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.43 E-value=27 Score=34.21 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=57.1
Q ss_pred HcCChhhHHH-HHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHH
Q 045105 410 MHGHGKEGIA-HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAY 488 (601)
Q Consensus 410 ~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 488 (601)
..|+...|-+ ++.-+....-.|+..-..+. .+...|+++.+.+.+... +.-+.....+..++++-..+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~-~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDV-EKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhch-hhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455544433 33334433334444333322 234566666666666432 2223333445556666666666666666
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 489 EFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 489 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.+-..| +.+ .++.+...........|-++++.-.+++...++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 665555 211 12222222222333445566666666666666554
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.99 E-value=68 Score=32.02 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=96.5
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH
Q 045105 365 SDVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442 (601)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (601)
.|-...-+++..+...-++.-++.+..++. ..+-..|..++.+|... ..++-..+|+++.+..+ .|.+.-..|..-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 344444556666666555666666665555 34555667777777776 45667777777777532 222223333344
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcC-----chHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPS-----LKHYTCMVDLLSRAGELGEAYEFIKKI----PMAPDSVMWGALLGGCVSH 513 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~ 513 (601)
|.+ ++.+.+..+|......-++.. ...|..|...- ..+.+....+..++ +...-.+.+.-+...|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 443 666677777754444322211 11333332211 23444445554444 3333445555555667777
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 514 GNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
.++.+|++++..+.+.+-.|..+...++..+-
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 77888888888777776666655555555443
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.90 E-value=3.8 Score=22.09 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
..|..+...+...|+++.|...+++..+..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3566777888899999999999999998877
No 344
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.72 E-value=7.6 Score=38.83 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=56.9
Q ss_pred ccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHH
Q 045105 445 HAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM-APDSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 445 ~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
..|+...|...+ ..+.......+ .....|.+.+.+.|...+|-.++.+. .+ ...+.++-.+.+++....++++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 345666666665 33222222222 22334556666666666666665443 21 2344556666667777777777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHH
Q 045105 522 AADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
.++.+.++.|+++++-..|..+-+
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 777777777777766666555433
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.28 E-value=25 Score=26.14 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=53.5
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 347 TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
..++|..|-+.+...+-. ...+-..=+..+.+.|++++|..+.+....||...|-+|-. -+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 345555555555544321 11111122345677888888888888888888888876643 456767777777777777
Q ss_pred CCCCccHHhHH
Q 045105 427 SGFRPDHISFL 437 (601)
Q Consensus 427 ~~~~p~~~~~~ 437 (601)
+| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 76 56555443
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.27 E-value=46 Score=28.53 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHhhcC-CCCchhH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCC
Q 045105 137 DVYRRCGDMLSALKIFSKFS-IKNEVSC-----NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSL 210 (601)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 210 (601)
..+..++++++|...++... .+....+ -.+.+.....|.+|+|+.+++.....+..+ .....-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCc
Confidence 33444555555555555433 1211111 223344455555555555555544322111 111112345555666
Q ss_pred hhHHHHHHHHHHH
Q 045105 211 YDEAFSMFRDLLM 223 (601)
Q Consensus 211 ~~~a~~~~~~~~~ 223 (601)
-++|..-|.+...
T Consensus 175 k~~Ar~ay~kAl~ 187 (207)
T COG2976 175 KQEARAAYEKALE 187 (207)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655554
No 347
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.22 E-value=89 Score=31.86 Aligned_cols=142 Identities=10% Similarity=0.024 Sum_probs=91.8
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+...|..++.---...+.+.+...++.+.. ..|--.--|......=.+.|..+.+.++|++-... ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 334566666655555556777777777765 22223334566666667788888999999888763 566666666666
Q ss_pred HHHH-hcCCcchHHHHHHHHHHh-cC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHH
Q 045105 102 PACA-RLQKLSLGKEFHGYITRN-GF-MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTI 166 (601)
Q Consensus 102 ~~~~-~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 166 (601)
..+. ..|+.+.....|+..... |. -.+...|...|..-..++++.....+++++.+-....|+..
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 5544 446677777777777654 32 23445777777777778888888888888775444444433
No 348
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.96 E-value=9.2 Score=28.39 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=38.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC----C-----CchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 510 CVSHGNLEFGQIAADRLIELEPN----N-----TGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
..+.||+..|.+.+.+..+.... . ..+...++.+....|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678888998888888765322 1 23445677788889999999999998753
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.82 E-value=53 Score=29.05 Aligned_cols=93 Identities=5% Similarity=-0.039 Sum_probs=52.8
Q ss_pred HHHHHhhhc-CChHHHHHHHHhCC-----CCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-------h
Q 045105 473 CMVDLLSRA-GELGEAYEFIKKIP-----MAPDSV---MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG-------N 536 (601)
Q Consensus 473 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~ 536 (601)
.+.+.|... .+++.|+..++..+ .+.+.. ++--+...-+..+++.+|+.++++.....-+++- .
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344555443 56667777766652 122222 2222223335678899999999998876544332 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 537 YVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+...+.++.-.++.-.+...+++-++..+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 22333344444777777777777766654
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.75 E-value=26 Score=30.13 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCCchhHHHHHHHHHhcCCHHHH
Q 045105 111 SLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS-------IKNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 111 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a 179 (601)
+.|.+.|-.+...+.--++.....|...|. ..|.+++..++-+.. ..|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555554445555555544444 445556655554432 23555666666666666666655
No 351
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.03 E-value=36 Score=27.59 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHHHHcCC-hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc
Q 045105 397 DLVSQNAMLTAYAMHGH-GKEGIAHFRRILASGFRPDHISFLSALSACVHA 446 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (601)
+..+|++++.+..+..- ---+..+|+-|.+.+.+++..-|..++.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44556666666644433 233555666666666666666677777666554
No 352
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.53 E-value=2.9 Score=40.67 Aligned_cols=98 Identities=10% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHhccCchHHHHHHHHHHHhcCCCcCchHHHHH-HHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 045105 441 SACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCM-VDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~ 517 (601)
..+...+.++.|..++....+ +.|+...|-+. ..++.+.+++..|+.=+.++ ...|. ...|-.=..+|.+.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 344555667777777754444 24543333222 25566666666665544443 33342 222322334455556666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHH
Q 045105 518 FGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
+|...++....+.|+++.....+
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHH
Confidence 66666777667777555444433
No 353
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=1.2e+02 Score=32.20 Aligned_cols=138 Identities=11% Similarity=0.059 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhC
Q 045105 129 PFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDN 208 (601)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 208 (601)
.......|..+.-.|+++.|-...-.|...+..-|..-+..+...++......+ +.......+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-
Confidence 345566677777777777777777777766666666666666665555443222 2221112345567777766665
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 045105 209 SLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMA 288 (601)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (601)
.+.. -|.+... .-+++...-..++++.- .+..+. .-+......|+..|...+++..|+.+
T Consensus 468 ~~~~----~F~e~i~--~Wp~~Lys~l~iisa~~------------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ 527 (846)
T KOG2066|consen 468 SDVK----GFLELIK--EWPGHLYSVLTIISATE------------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPI 527 (846)
T ss_pred HHHH----HHHHHHH--hCChhhhhhhHHHhhcc------------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHH
Confidence 2222 2222221 12222222222222210 000000 11122233488888889999999887
Q ss_pred hh
Q 045105 289 FD 290 (601)
Q Consensus 289 ~~ 290 (601)
+-
T Consensus 528 yl 529 (846)
T KOG2066|consen 528 YL 529 (846)
T ss_pred HH
Confidence 77
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.08 E-value=2.2 Score=39.42 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=56.8
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSV-MWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 521 (601)
...|.+++|++.+....... ++....|..-..++.+.+++..|++=++.. .+.||.. .|-.=-.+.+..|++++|..
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34566666666663333322 333334444445556666666666555544 3344322 22222223334566666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
.+..+.+++- +..+-..+-.+.-+.+..++-....++.+
T Consensus 204 dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 204 DLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 6666666654 34444444444455555555554444443
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.07 E-value=32 Score=27.34 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=48.0
Q ss_pred CcCchHHHHHHHHhhhcCCh---HHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 465 KPSLKHYTCMVDLLSRAGEL---GEAYEFIKKI-P-MAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
.++..+--.+..++.+..+. .+.+.+|+.+ + ..| .....-.|.-++.+.|+++.+.+.++.+.+.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45555556677777766654 4445666655 2 223 33445556667888899999999999999998876543
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.97 E-value=32 Score=25.63 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
.++|.-|-+.+...+-. ...+-..-+..+...|++++|..+.+...-||...|-++-. .+.|-.+++..-+..|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45566666665554422 22222233445667788888888877777677666665533 3455556666666666655
Q ss_pred C
Q 045105 190 G 190 (601)
Q Consensus 190 g 190 (601)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 5
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.32 E-value=71 Score=29.28 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=48.9
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH-HHHHHHH
Q 045105 467 SLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV-MLANLFA 545 (601)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~ 545 (601)
++.....+...|.+.|++.+|+..|-.-. .|+...+..++..+...|. |.+...+. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHHH
Confidence 46677888899999999999988876653 3333333233433333443 22223332 2334567
Q ss_pred HcCCHHHHHHHHHHHhhc
Q 045105 546 YAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~ 563 (601)
-.|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 789999999988877655
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.66 E-value=10 Score=26.68 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=29.7
Q ss_pred HcCChhhHHHHHHHHHHCCCCccH--HhHHHHHHHHhccCchHHHHHHH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDH--ISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
..++.++|+..|...++.-..|.. .++..++.+++..|++.+++.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777665333322 26666777777777777766654
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.50 E-value=13 Score=33.78 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
++.....|..+|.+.+|.++.+++..++|-+...+..|...|...|+--.|.+.++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445566778888888888888888888888888888888888888876676666665
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.82 E-value=26 Score=30.92 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHH-------HHHHhcC--CC----CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 502 MWGALLGGCVSHGNLEFGQIAA-------DRLIELE--PN----NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~-------~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
.+..+.+.|...|+.+.....+ +++.+.. |. .......++.+..+.|++++|.+.+.++...+-..
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3444555566666644444444 4444332 21 23456667778888999999999998887655433
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.79 E-value=8.7 Score=27.06 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=34.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCHHHHHHH
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTG---NYVMLANLFAYAGRWSDLART 556 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 556 (601)
...+.+.|+..++++.+..++.+. ++-.+..+|+..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999888776443 444566788888999888887
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.29 E-value=87 Score=34.12 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=48.2
Q ss_pred HhhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcC--------ChhHHHHH--HHHHHhc-------CCC----
Q 045105 477 LLSRAGELGEAYEFIKKIP---MAPDSVMWGALLGGCVSHG--------NLEFGQIA--ADRLIEL-------EPN---- 532 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g--------~~~~a~~~--~~~~~~~-------~p~---- 532 (601)
.|......+-++.+++.+. -.++....+.++..|+..- +.+++.+. .+++... .|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 3455666667777777763 2345666666666665321 12233332 2222221 222
Q ss_pred ---CCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 533 ---NTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 533 ---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
...-|...+-++.+.|+.++|+.++-...
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 24556667777889999999999865443
No 363
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.86 E-value=76 Score=28.15 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=49.2
Q ss_pred hcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhc----------------CCCCChhhHHHHH
Q 045105 342 CSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKR----------------ISTPDLVSQNAML 405 (601)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----------------~~~~~~~~~~~ll 405 (601)
|.+..+..--.++.+-....+++-+.....+++ +...|+...|..-++. ...|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444444444444444455555544444443 3446666666554443 2245555555555
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCccHH
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRPDHI 434 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 434 (601)
..|. .+++++|.+++.++.+.|+.|...
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 5443 455777777777777777766543
No 364
>PRK09687 putative lyase; Provisional
Probab=70.85 E-value=90 Score=28.99 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=25.4
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
+..+-...+.++.+.|+.+-.-.+.+.+..++ .....+.++...|.. +|+..+.++.+
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 33444444555555555333333333333333 122344455555543 45555555554
No 365
>PRK10941 hypothetical protein; Provisional
Probab=70.64 E-value=18 Score=33.13 Aligned_cols=67 Identities=9% Similarity=-0.024 Sum_probs=50.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
+.+-.+|.+.++++.|+...+.+ ...| ++.-+.--.-.|.+.|.+..|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 44556778888888888888877 3455 4555666666788889999999999999999887775443
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.83 E-value=24 Score=32.14 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHH
Q 045105 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYI 120 (601)
Q Consensus 62 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 120 (601)
++.....|..+|.+.+|.++.+...... +.+...+-.+++.++..|+--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344445555555555555555555432 334445555555555555544444444443
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.70 E-value=59 Score=26.42 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=59.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCC----CCCChhhHHHHHHHHhhcCC-hHHHHHHHHHHHHcCCCCCHhhHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDN----ETPNLVSWSAVIGGFTQNGY-DEEAIGMLFRMQAEGLEPNARTLSS 99 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 99 (601)
-.|+++.-....+++...+.+++.+..... ...+-..|++++.+.....- --.+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 367777777778888888888887754211 13355678888888866555 3356778888887778888888888
Q ss_pred HHHHHHhc
Q 045105 100 VLPACARL 107 (601)
Q Consensus 100 ll~~~~~~ 107 (601)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88887764
No 368
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=69.10 E-value=9.4 Score=33.32 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=31.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..+|.+.+.+++.++.++.|.....|..++..-.++|+++.|.+.+++..+.++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 445555666666666666665555666666555566666666666655555443
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.47 E-value=42 Score=33.95 Aligned_cols=134 Identities=14% Similarity=0.056 Sum_probs=89.5
Q ss_pred CccHHhHHHHHHHHhccC--chHHHHHHHHHHHhcCCCcCchHHHHHHHHhh-hcCChHHHHHHHHhC-CCCC--CHHHH
Q 045105 430 RPDHISFLSALSACVHAG--SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS-RAGELGEAYEFIKKI-PMAP--DSVMW 503 (601)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~~--~~~~~ 503 (601)
-|+..+..+++.-...-- ..+-+-.++..| ...+.|-....| +...|. -.|+...|..-+..+ ...| ..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 356666655554443222 223334444443 333444433333 233344 468899998888766 3344 33445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..|.....+.|-.-.|...+.+...+....|-++..+++++.-..+++.|.+.|+...+...
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 56677777778777899999999998877889999999999999999999999998877664
No 370
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.45 E-value=67 Score=29.92 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=23.8
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCccHH---hHHHHHHHHhccCchHHHHHHH
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRPDHI---SFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
+-.+.|+..+|.+.++++.+. .|-.. .-..|+.+|.....+.....++
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666665543 22111 2234555555555555444444
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.20 E-value=1.2e+02 Score=29.42 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh-hcCChHHHHHHHHhC
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS-RAGELGEAYEFIKKI 494 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 494 (601)
|..+.+.|.+..|.++.+.+......-|+.....+|+.|+ ++++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4455667777777777766666554445555555566654 566666666666554
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.89 E-value=15 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCC
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASG 428 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~ 428 (601)
+..+|...|+.+.|..++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777777544
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.80 E-value=9.9 Score=20.82 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=22.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 514 GNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
|+.+.+..+++++....|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888777777666543
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.69 E-value=96 Score=28.07 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=51.8
Q ss_pred eehHHHHHHHHhCCChhHHHHHHHHHHHcCCC---CCC-------hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCC-CC
Q 045105 196 ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGI---EPT-------SFTFGSVLIACADMNSLRKGKEIHALAIALGL-QS 264 (601)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~ 264 (601)
.|-..|...|...+.+.+..++++++.+.... ..| ...|..-+..|....+-.....++++...... -|
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 34455677777777777777777776542110 001 23466667777777777777888877654432 23
Q ss_pred chhHHHHHHH----HHHhcCCHHHHH
Q 045105 265 DTFVGGALVE----MYCRYQDLVAAQ 286 (601)
Q Consensus 265 ~~~~~~~li~----~~~~~g~~~~a~ 286 (601)
.+.....+-. +..+.|.+++|.
T Consensus 226 HPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 226 HPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred chHHHhHHHHcCCccccccchHHHHH
Confidence 3333322221 234567777765
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.18 E-value=58 Score=29.69 Aligned_cols=120 Identities=13% Similarity=0.019 Sum_probs=63.4
Q ss_pred HHhcCChHHHHHHHHHhhhcC-----CCCCCh-------hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 33 CAANGLVLEALECLERMSSLD-----NETPNL-------VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~-----~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
+.-..|+..|++..++-.+.- ...++. ...-.=|++++..++|.+++...-+.-+.--+........-
T Consensus 45 LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC 124 (309)
T PF07163_consen 45 LVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC 124 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 344677877777777644420 011111 12234477788888888887766665443112222334444
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh-----cCCHHHHHHHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR-----CGDMLSALKIF 152 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 152 (601)
|-.|.+.+.+..+.++-..-....-.-+..-|.+++..|.. .|.+++|+++.
T Consensus 125 ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 44566777777777766655543322233345555554433 45555555544
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.93 E-value=46 Score=24.12 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 045105 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180 (601)
Q Consensus 114 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (601)
.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .....|..++.++-..|+-+-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 445555555553 222222222222224566777777777777 66667777777776666655443
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.63 E-value=44 Score=26.47 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHH
Q 045105 77 EAIGMLFRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGY 119 (601)
Q Consensus 77 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 119 (601)
.+.++|..|...|+-.. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888877765433 44566667777777888888887764
No 378
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.01 E-value=2e+02 Score=31.13 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 045105 247 LRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQD 281 (601)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (601)
...+...++.....-...++..+|.++..|.+..+
T Consensus 609 ~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 609 ENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 33444455555444446677888888888876544
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.71 E-value=50 Score=24.25 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCHH
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN--NTGNYVMLANLFAYAGRWS 551 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 551 (601)
|....-.+...+...|+++.|.+.+-.+.+.+|+ +...-..++.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5566667777888888888888888888888765 3566677777777777744
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=65.14 E-value=35 Score=27.18 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHh-cCCC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 497 APDSVMWGALLGGCVSHGN---LEFGQIAADRLIE-LEPN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++..+--.+.+++.++.+ +.+.+.+++.+.+ -.|. .....+.|+-.+.+.|+|+.++++++.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 5666677778888887654 5667778888886 3443 34566677888999999999999998887654
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.08 E-value=2e+02 Score=30.69 Aligned_cols=136 Identities=12% Similarity=0.025 Sum_probs=76.0
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCCHHHH
Q 045105 70 TQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMS-NPFVVNGLVDVYRRCGDMLSA 148 (601)
Q Consensus 70 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a 148 (601)
.+.|++..+.++...+....+ ..-..|..+... .+.. ...++-..+.+..-.| ....-...+..+.+.+++...
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~---l~~~-~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD---LMNQ-PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc---cccC-CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Confidence 456777777777776643211 111122222221 1111 1224444444433223 233334455566677888888
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChh
Q 045105 149 LKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYD 212 (601)
Q Consensus 149 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 212 (601)
..++.. ...+...-.....+....|+.++|......+-..| .......+.++..+.+.|...
T Consensus 119 ~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 119 LAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCC
Confidence 773322 23455556777788888888888877777776666 445667777777777666543
No 382
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.54 E-value=1.1e+02 Score=31.17 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=44.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCC-CCchHHHHHHHH-HHcCCHHHHHHHHHHHh-hcCCccCCCc
Q 045105 508 GGCVSHGNLEFGQIAADRLIELEPN-NTGNYVMLANLF-AYAGRWSDLARTRQKMK-DRRMHKSPGC 571 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~l~~~~-~~~~~~~~~~ 571 (601)
..+.+.|-+..|.++.+.+.+++|. ||.....++..| .+..+|+--.+++++.. ...+...|..
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~ 416 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF 416 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc
Confidence 3455678888888888888888887 777777777776 46677777777777773 4444455553
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.45 E-value=33 Score=27.76 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=45.6
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCH
Q 045105 484 LGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRW 550 (601)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (601)
.+.|.++.+-|| ...............|++..|.++.+.+...+|+|...-...+.+|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777777775 2233334455567789999999999999999999999888888888766543
No 384
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.30 E-value=52 Score=29.31 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=39.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 510 CVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+...|++-++++....+....|.|..+|+.-+.+.+..=+.++|..-|....+-.
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3455777777777777777777777777777777777777777777776665544
No 385
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=63.04 E-value=1.3e+02 Score=28.52 Aligned_cols=83 Identities=19% Similarity=0.031 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhhhcCCC---CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 045105 39 VLEALECLERMSSLDNE---TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKE 115 (601)
Q Consensus 39 ~~~A~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 115 (601)
.+.|.+.|+........ ..+......++....+.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 56677778877763222 34566667777777788876665555555553 3466677778888888888888888
Q ss_pred HHHHHHHhc
Q 045105 116 FHGYITRNG 124 (601)
Q Consensus 116 ~~~~~~~~g 124 (601)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 888887754
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.94 E-value=37 Score=26.54 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=36.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 045105 493 KIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 493 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
.+.+-|++.+..+-+++|.+.+|+..|.++++-+...-+.....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 335678999999999999999999999999998887766443444433
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.62 E-value=27 Score=30.18 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 496 MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
..|++.++..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 467888888888888888888888888888888877
No 388
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.46 E-value=12 Score=31.45 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=28.8
Q ss_pred CCCC-HHHHHHHHHHHHhcC----C-------hhHHHHHHHHHHhcCCCCCchHHHHHHHHHH-cCCHHHHHHHHHHHhh
Q 045105 496 MAPD-SVMWGALLGGCVSHG----N-------LEFGQIAADRLIELEPNNTGNYVMLANLFAY-AGRWSDLARTRQKMKD 562 (601)
Q Consensus 496 ~~~~-~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~ 562 (601)
++|+ ..++..+..+|...+ + +++|.+.++++.+.+| =-..|.+ ....+.|=++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P--------~ne~Y~ksLe~~~kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP--------NNELYRKSLEMAAKAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T--------T-HHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHhhHHHHHHHHH
Confidence 4564 345555555554322 2 3444445555555566 2223322 2344556666666666
Q ss_pred cCCccC
Q 045105 563 RRMHKS 568 (601)
Q Consensus 563 ~~~~~~ 568 (601)
++..+.
T Consensus 136 ~~~~~q 141 (186)
T PF06552_consen 136 QGLGQQ 141 (186)
T ss_dssp SSS---
T ss_pred HHhhhh
Confidence 654443
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.29 E-value=1.3e+02 Score=29.58 Aligned_cols=52 Identities=6% Similarity=-0.028 Sum_probs=27.5
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHH--hHHHHHHHHh--ccCchHHHHHHHHHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHI--SFLSALSACV--HAGSIKTGSEFFDLMA 460 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~ 460 (601)
+...+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33556666677777666665 444443 3333344443 3445556666665433
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.25 E-value=3.8e+02 Score=33.03 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC----CC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFS----IK--NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD 207 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (601)
.+..+-.+++.+.+|...++.-. +. ...-|-.+...|..-+++|+..-+...- ..+...+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-----~a~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-----FADPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-----hcCccHH-HHHHHHHh
Confidence 44456667888999999998832 11 1222444555888888888877766541 1222223 34555677
Q ss_pred CCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHH
Q 045105 208 NSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHA 255 (601)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 255 (601)
.|+|+.|...|+.+.+ ..|+ ..+++-++......+.++...-..+
T Consensus 1462 ~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred hccHHHHHHHHHHhhc---CCCccccchhhHHHhhhcccchhHHHhhhc
Confidence 8999999999999875 4444 6677777777777777666655433
No 391
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.88 E-value=27 Score=32.57 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHHhhhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 475 VDLLSRAGELGEAYEFIKKI-P---MAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
.+-|.+..++..|...+.+. . -.| +.+.|+.=..+-...|++..|+.-..+++..+|.+..+|..=+.|+....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 35567778888888887655 1 123 34455544445556788999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHH
Q 045105 549 RWSDLARTRQKM 560 (601)
Q Consensus 549 ~~~~A~~~l~~~ 560 (601)
++++|....++.
T Consensus 168 ~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 168 RFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHhhh
Confidence 877777766554
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.83 E-value=49 Score=25.92 Aligned_cols=54 Identities=15% Similarity=0.335 Sum_probs=44.3
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHh
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRC 361 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 361 (601)
.|+...|..-.-+..+..-.+.|++......+++|.+.+++..|.++++-++..
T Consensus 60 r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 60 RPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred cccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 477777777667777777788999999999999999999999999999877643
No 393
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.64 E-value=1.1e+02 Score=27.23 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=54.3
Q ss_pred hHHHHHHHHH--HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 400 SQNAMLTAYA--MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 400 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
.|..++.+|- .++++++|++.+-+- .+.|+.. .-++.++...|+.+.|..+++.+.-. ..+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 3555566644 345666666665221 1222222 13566666677777777777653111 1111122222233
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 045105 478 LSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHG 514 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 514 (601)
..++...||..+.+.....-....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556777777777776642223446666666665443
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.21 E-value=95 Score=28.42 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=9.6
Q ss_pred HHHHHhCCChhHHHHHHHHHH
Q 045105 202 ISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~~~ 222 (601)
|-.|.+.+.+..+.++-..-+
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334444455444444444444
No 395
>PRK12798 chemotaxis protein; Reviewed
Probab=60.76 E-value=1.7e+02 Score=28.62 Aligned_cols=178 Identities=12% Similarity=0.169 Sum_probs=114.5
Q ss_pred cCChHHHHHHHhcCC----CCChhhHHHHHHHH-HHcCChhhHHHHHHHHHHCCCCccHH----hHHHHHHHHhccCchH
Q 045105 380 CGSLKHARLAYKRIS----TPDLVSQNAMLTAY-AMHGHGKEGIAHFRRILASGFRPDHI----SFLSALSACVHAGSIK 450 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~ 450 (601)
.|+.+++.+.+..+. .+....|-.|+.+- ....+...|+.+|+...-. -|-.. ....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 699999999999887 34555677777654 4557899999999987653 44332 3444455667889999
Q ss_pred HHHHHH-HHHHhcCCCcCchHHH-HHHHHhhh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045105 451 TGSEFF-DLMAYYDVKPSLKHYT-CMVDLLSR---AGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADR 525 (601)
Q Consensus 451 ~a~~~~-~~~~~~~~~~~~~~~~-~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 525 (601)
++..+- +......-.|=...|. .+...+.+ .-..+.-..++..|.-.--...|-.+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 887776 4444444444333222 22233333 334455566677764233456888888888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHH-----HcCCHHHHHHHHHHH
Q 045105 526 LIELEPNNTGNYVMLANLFA-----YAGRWSDLARTRQKM 560 (601)
Q Consensus 526 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~l~~~ 560 (601)
+..+.. ....-...+.+|. -..++++|.+.+..+
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999864 2333333333332 345677777766655
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=60.51 E-value=1.1e+02 Score=26.22 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 265 DTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.-.+.|.....|.+.|..+.|..+++
T Consensus 180 rCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 180 RCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34566788889999999999998887
No 397
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.80 E-value=2.4e+02 Score=29.95 Aligned_cols=212 Identities=16% Similarity=0.182 Sum_probs=115.0
Q ss_pred HHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhC
Q 045105 250 GKEIHALAIALGLQSD---TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSL 326 (601)
Q Consensus 250 a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 326 (601)
-..++.+|..+--.|+ ..+...++-.|....+++...++.+.++.+-..++-..
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve----------------------- 238 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVE----------------------- 238 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhc-----------------------
Confidence 3445566665543443 34445556666667777777777774443222221111
Q ss_pred CCCCC-HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHH
Q 045105 327 DLTPD-IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAML 405 (601)
Q Consensus 327 ~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll 405 (601)
.++ .+.|...++---+.|+-++|+.+.-.+++..-+..+. +||-+|++ |+.|- +-
T Consensus 239 --~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD-------m~Cl~GRI------YKDmF---------~~ 294 (1226)
T KOG4279|consen 239 --THNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD-------MYCLCGRI------YKDMF---------IA 294 (1226)
T ss_pred --cCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc-------eeeeechh------hhhhh---------hc
Confidence 111 1234445555566788888888877777653322222 23444432 22221 11
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCccHH---hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRPDHI---SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG 482 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 482 (601)
..|...+..+.|.+.|++.-+ +.|+.. .+..|+.+-.. .++...++ +.-|+ .|-..+++.|
T Consensus 295 S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El----q~Igm--------kLn~LlgrKG 358 (1226)
T KOG4279|consen 295 SNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL----QQIGM--------KLNSLLGRKG 358 (1226)
T ss_pred cCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH----HHHHH--------HHHHHhhccc
Confidence 123444556777888887776 577664 34445444222 12222222 22221 2334567888
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 483 ELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 483 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
..+...++++-. ..+.+-.-.+|+.+|.++.+.|.++.|...
T Consensus 359 ~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 359 ALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 888877777643 234455566888999999999999987543
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.67 E-value=21 Score=23.05 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 537 YVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+..++-++.+.|++++|++..+.+.+..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 56678889999999999999999887663
No 399
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.63 E-value=55 Score=27.69 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhhhcCCCCCC--hhh-----HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 045105 39 VLEALECLERMSSLDNETPN--LVS-----WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQ 108 (601)
Q Consensus 39 ~~~A~~~~~~m~~~~~~~~~--~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (601)
.+.|+.+|+.+.+. ...|. ... -...+..|.+.|.+++|.+++++..+ .|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E-~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKE-FSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 57888999888874 33321 111 12234567888888888888888876 455555555444444443
No 400
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.57 E-value=76 Score=24.12 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
....++|..|.+.+...+.. ...+--.-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 34567788888877776542 2222223344567788888885555555567777776553 35667777777777777
Q ss_pred HHCCCCccHHhH
Q 045105 425 LASGFRPDHISF 436 (601)
Q Consensus 425 ~~~~~~p~~~~~ 436 (601)
..+| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4544444
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.08 E-value=39 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=15.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 71 QNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 71 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555555544444443
No 402
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=57.87 E-value=37 Score=30.83 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=45.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.+-.++.+.++++.|....++...++|.++.-...-+.+|.+.|-+.-|.+-+....+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34455777788888888888888888888887888888888888888888877765443
No 403
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.75 E-value=2e+02 Score=28.48 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=9.6
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 045105 136 VDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~ 154 (601)
+...+..|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3334455665555555543
No 404
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.66 E-value=2.8e+02 Score=30.13 Aligned_cols=227 Identities=12% Similarity=-0.004 Sum_probs=116.4
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchh-------HHHHHHH-HHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChh
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTF-------VGGALVE-MYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVY 312 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (601)
.....++.+|..++.++...--.|+.. .+++|-. .....|+++.|.++.+.. +..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a------l~~L~--------- 489 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA------LVQLP--------- 489 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHhcc---------
Confidence 445677888888887776543333221 2222211 223478888888777621 11222
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHH-----HHHHhcCCh--HH
Q 045105 313 TWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALV-----DMYAKCGSL--KH 385 (601)
Q Consensus 313 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~--~~ 385 (601)
+.-..+....+..+..+..-.|++++|..+.....+..-..+...+.... ..+...|+. .+
T Consensus 490 ------------~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 490 ------------EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred ------------cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11123445556667777778899999998888776654344444443322 224445632 22
Q ss_pred HHHHHhcCC-----C-----CChhhHHHHHHHHHHc-CChhhHHHHHHHHHHCCCCccHH--hHHHHHHHHhccCchHHH
Q 045105 386 ARLAYKRIS-----T-----PDLVSQNAMLTAYAMH-GHGKEGIAHFRRILASGFRPDHI--SFLSALSACVHAGSIKTG 452 (601)
Q Consensus 386 a~~~~~~~~-----~-----~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a 452 (601)
....|.... + +-...+..++.++.+. +...++..-+.--......|-.. .+..|+......|+.++|
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A 637 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKA 637 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHH
Confidence 233333222 1 2223444555555542 12222222222222222222222 233567777889999999
Q ss_pred HHHHHHHHhcCCCcC----chHHHHHHHH--hhhcCChHHHHHHHHhC
Q 045105 453 SEFFDLMAYYDVKPS----LKHYTCMVDL--LSRAGELGEAYEFIKKI 494 (601)
Q Consensus 453 ~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 494 (601)
...+..+......+. ...-...+.. -...|+.+++...+.+-
T Consensus 638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 988877665444332 2222222222 23568888877776663
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=1.6e+02 Score=27.06 Aligned_cols=160 Identities=11% Similarity=0.104 Sum_probs=81.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHH-------hHHHHHHHHhccCchHHHHHHH----HHHHhcCCCcCchHHH
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHI-------SFLSALSACVHAGSIKTGSEFF----DLMAYYDVKPSLKHYT 472 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~ 472 (601)
+.+-..+.+++++|+..+.+++..|+..+.. +..-+...|.+.|++....+.. ..|....-+-...+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3444567788899999999999888776654 4455667777777776554443 2222222222233444
Q ss_pred HHHHHhhhc-CChHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH----hc--CCCCCchH
Q 045105 473 CMVDLLSRA-GELGEAYEFIKKIP---MAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLI----EL--EPNNTGNY 537 (601)
Q Consensus 473 ~l~~~~~~~-g~~~~A~~~~~~~~---~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~--~p~~~~~~ 537 (601)
+|++.+... ..+++-++++...- .+-. ...-.-++..+.+.|.+..|.....-+. ++ .|+-...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 555544322 23444444443320 0000 0111224555666666666665543322 22 22223344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
..=..+|..-.+...+..-+...+-.
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 44445555556666555555554444
No 406
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.43 E-value=69 Score=31.36 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCC-CCchHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLI-------ELEPN-NTGNYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
+.-.|++..+-.||+..|+++++-+. ...|. ...++.+++-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666667788877777765442 12232 56788889999999999999999888763
No 407
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.82 E-value=2.2e+02 Score=28.26 Aligned_cols=141 Identities=11% Similarity=0.017 Sum_probs=62.5
Q ss_pred CCCchhHHHHHhhCCCCCcc--chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHhhcCChHHHHH
Q 045105 5 CGSLDDAKKVFKMMPERDCV--SWNSVVTACAANGLVLEALECLERMSSLDNETPNLV--SWSAVIGGFTQNGYDEEAIG 80 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~ 80 (601)
.|+++-+..+++.-..++.. ...+.+...+..|+.+-+.-+++. +..|+.. .....+...+..|+.+.+..
T Consensus 12 ~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-----ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 12 FGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-----GAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 46666666666654444332 123344555566666544444433 3333321 11223445556677665544
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHH--HHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 81 MLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFV--VNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
+++.-....-..+..-.+. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++.-
T Consensus 87 Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 87 LLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 4432110000001111112 2222333433 45555666665554321 123344455666666666655543
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.11 E-value=44 Score=28.90 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=19.2
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh
Q 045105 91 EPNARTLSSVLPACARLQKLSLGKEFHGYITRN 123 (601)
Q Consensus 91 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (601)
.|+..+|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555665566666666666666555555543
No 409
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.74 E-value=1e+02 Score=25.14 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Q 045105 80 GMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCG 143 (601)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 143 (601)
++.+.+++.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 35556667777766543 3456677777777888888888888776666655544555555555
No 410
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.49 E-value=1.4e+02 Score=25.61 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC-----------CC----CCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELE-----------PN----NTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------p~----~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
-+++..|.+.-++.++.++++.+.++. |. ...+.+..+.++..+|..|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 456777888888999999999998852 21 34567778889999999999999987
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.76 E-value=25 Score=26.89 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.-|..|+..|...|..++|.++|.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3578899999999999999999999887
No 412
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.36 E-value=1.8e+02 Score=26.47 Aligned_cols=168 Identities=16% Similarity=0.089 Sum_probs=92.3
Q ss_pred CCCccchHHHHHHH-HhcCChHHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHhhcCChHHHHHHHHHHHHc---CC--C
Q 045105 20 ERDCVSWNSVVTAC-AANGLVLEALECLERMSSLDNETPN--LVSWSAVIGGFTQNGYDEEAIGMLFRMQAE---GL--E 91 (601)
Q Consensus 20 ~~~~~~~~~ll~~~-~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~ 91 (601)
+||+..=|..-.+- .+...+++|+.-|++..+..+.+.+ ..+...+|..+.+.+++++..+.+.+|..- .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555433322221 2345788999999998876333222 234456788888999999998888887532 11 1
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhc-----CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------
Q 045105 92 PNARTLSSVLPACARLQKLSLGKEFHGYITRNG-----FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-------- 158 (601)
Q Consensus 92 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 158 (601)
-+....++++.......+.+....+++.-++.- -..=-.|-+.|.+.|...+++.+...+++++...
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 233455666665555555554444444333210 0000113345566666667776666666655310
Q ss_pred -------CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045105 159 -------NEVSCNTIIVGYCENGNVAEARELFDQME 187 (601)
Q Consensus 159 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (601)
=...|..=|..|....+-.+-..+|++..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 12235555666666666555555665544
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.61 E-value=1e+02 Score=23.57 Aligned_cols=27 Identities=7% Similarity=0.304 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
-|..|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777766
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.36 E-value=1e+02 Score=24.36 Aligned_cols=42 Identities=12% Similarity=-0.041 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 518 FGQIAADRLIELE--PNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 518 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
.+.++++.+.+.+ -..+.-|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888888754 44567888889999999999999999875
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.51 E-value=30 Score=30.42 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=41.8
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
...+.|+.+.|.+++.++ +..| ....|-.+...--++|+++.|.+.|++..+++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345667777777777766 4444 56677777777788888888888888888887763
No 416
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.95 E-value=3.1e+02 Score=28.61 Aligned_cols=285 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHH-hcccCCHHHHHHHHHHHHH-------cCCCCchhHHHHHHHHHHhcC
Q 045105 209 SLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA-CADMNSLRKGKEIHALAIA-------LGLQSDTFVGGALVEMYCRYQ 280 (601)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g 280 (601)
+....+.++++.......+.+-...=.....+ .....+.+.|...++.+.+ .+ .+.....+..+|.+
T Consensus 226 ~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~-- 300 (552)
T KOG1550|consen 226 GELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ-- 300 (552)
T ss_pred hhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc--
Q ss_pred CHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHH
Q 045105 281 DLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIR 360 (601)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 360 (601)
|..+... +.+.|..++....+
T Consensus 301 ----------------------------------------------g~~~~~~-------------d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 301 ----------------------------------------------GLGVEKI-------------DYEKALKLYTKAAE 321 (552)
T ss_pred ----------------------------------------------CCCCccc-------------cHHHHHHHHHHHHh
Q ss_pred hCCCCchhHHhHHHHHHHh-cCChHHHHHHHhcCC-CCChhhHHHHHHHHHHc----CChhhHHHHHHHHHHCCCCccHH
Q 045105 361 CGYDSDVHIGTALVDMYAK-CGSLKHARLAYKRIS-TPDLVSQNAMLTAYAMH----GHGKEGIAHFRRILASGFRPDHI 434 (601)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~ 434 (601)
.| .|+....-..+..... ..+...|..+|.... ......+-.+..+|..- .+...|..++++..+.| .|...
T Consensus 322 ~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~ 399 (552)
T KOG1550|consen 322 LG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAA 399 (552)
T ss_pred cC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhH
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHh-------hhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL-------SRAGELGEAYEFIKKIPMAPDSVMWGALL 507 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 507 (601)
--...+..+.. +.++.+.-.+..+...|.......-..++... ....+...+...+.+....-+......+.
T Consensus 400 ~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lg 478 (552)
T KOG1550|consen 400 YLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLG 478 (552)
T ss_pred HHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhc
Q ss_pred HHHHhc----CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCHHHHHHHHHHHhhcC
Q 045105 508 GGCVSH----GNLEFGQIAADRLIELEPNNTGNYVMLANLFAY----AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 508 ~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~ 564 (601)
..|... .+++.|...+.++.+.. ......++..+.. .+ +..|.++++...+.+
T Consensus 479 d~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 479 DYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred ceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcC
No 417
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=50.92 E-value=3.6e+02 Score=29.27 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHHHhhhcCChHHHHHHHHhCCCCCCHH--HHHHHHHH-HHhc---C-ChhHHHHH---HHHHHhcCCCCCc-----hHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKIPMAPDSV--MWGALLGG-CVSH---G-NLEFGQIA---ADRLIELEPNNTG-----NYV 538 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~-~~~~---g-~~~~a~~~---~~~~~~~~p~~~~-----~~~ 538 (601)
..+-+...|.+++|+.++..++ ++|.. +.+.++.- .... + +.++-..+ +..+.+.+|.++. ++.
T Consensus 628 vA~~a~~~G~~~~sI~LY~lag-~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~ 706 (835)
T KOG2168|consen 628 VASEADEDGLFEDAILLYHLAG-DYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTLS 706 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHHH
Confidence 3344567899999999998887 55533 33333332 1111 1 22222222 3333334454332 333
Q ss_pred HHHHHH-----HHcCCHHHHHHHHHHHhhc
Q 045105 539 MLANLF-----AYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 539 ~l~~~~-----~~~g~~~~A~~~l~~~~~~ 563 (601)
.|.... ...|.|++|+++++.+.--
T Consensus 707 lLl~~~~~f~~y~~~~~e~aL~~le~l~Li 736 (835)
T KOG2168|consen 707 LLLDLVSFFDLYHNGEWEEALSILEHLDLI 736 (835)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 333322 4689999999998877543
No 418
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.74 E-value=56 Score=32.20 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHH
Q 045105 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 223 (601)
+.+++-.++++.+.+.| .+|.- ..-|..|-+.+++++|..-+++-.+
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad~l--p~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GADFL--PSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCCcc--ceeeecccccccHHHHHHHHHhhhh
Confidence 44677777788777765 34432 3346778888888888888876543
No 419
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=50.73 E-value=3.8e+02 Score=29.53 Aligned_cols=120 Identities=9% Similarity=0.089 Sum_probs=69.7
Q ss_pred CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045105 108 QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQME 187 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (601)
.....|..+-..|.+. -+.+|.++++.|..-.-.+.++.-.+.|.. -.....+.-.+.|.++.
T Consensus 1161 D~r~da~klk~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e~dae---------ee~s~ld~~~e~y~el~ 1223 (1304)
T KOG1114|consen 1161 DTRPDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKEQDAE---------EELSKLDSYNENYQELL 1223 (1304)
T ss_pred CCcchHHHHHHHHHHH--------HHHHHHHHHHhhhHHhhhhhhcccccccch---------hhhhhhhhHHHHHHHHH
Confidence 3344477777777653 256777777776533223333322222211 01123444555566655
Q ss_pred hcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhccc
Q 045105 188 HLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADM 244 (601)
Q Consensus 188 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 244 (601)
..--..|..++..-...+...|++..+++++.++.++.+-.++...+..++..+...
T Consensus 1224 kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~L 1280 (1304)
T KOG1114|consen 1224 KWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENL 1280 (1304)
T ss_pred HHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 432234666666666777788999999999999888777777777766555444333
No 420
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.81 E-value=3.4e+02 Score=28.76 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=38.9
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCCh-------HHHHHHHHHHHHc
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYD-------EEAIGMLFRMQAE 88 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~m~~~ 88 (601)
.|. ++-.|.|+|++++|.++...... ........+-..+..|..+.+- ++...-|++..+.
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 343 67788899999999999966665 4455566777777877765322 3445555555443
No 421
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.53 E-value=56 Score=20.52 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVD 137 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 137 (601)
..+.|-.+++..+++.|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4456777889999999999999888888887765
No 422
>PRK12798 chemotaxis protein; Reviewed
Probab=49.47 E-value=2.7e+02 Score=27.39 Aligned_cols=194 Identities=11% Similarity=0.081 Sum_probs=124.1
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHH--HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH-
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYA--MHGHGKEGIAHFRRILASGFRPDHISFLSALSAC- 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~- 443 (601)
+......+-.....|+++-...++..-..++.. +.++.+.. -.|+..++.+.+..+.....++....|..|+.+-
T Consensus 81 prNv~Aa~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l 158 (421)
T PRK12798 81 PRNVDAALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNL 158 (421)
T ss_pred ccchhHHHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHH
Confidence 333344555556678888777777766644332 22333322 3589999999999998877777777888887764
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCch----HHHHHHHHhhhcCChHHHHHH----HHhCCCCCC-HHHHHHHHHHHHhcC
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLK----HYTCMVDLLSRAGELGEAYEF----IKKIPMAPD-SVMWGALLGGCVSHG 514 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~-~~~~~~l~~~~~~~g 514 (601)
....+..+|+.+|+...- ..|... ...--+......|+.+++..+ +++..-.|= ...+..+..+..+.+
T Consensus 159 ~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~ 236 (421)
T PRK12798 159 MVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD 236 (421)
T ss_pred hcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc
Confidence 456688999999976433 234322 222223345678888887554 555543442 233444555666666
Q ss_pred ChhHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 515 NLEFGQIAADRLIELEPN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+-..-..+.+.+..++|. -...|..++..-.-.|+.+-|.-.-++.+.-.
T Consensus 237 d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 237 DEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred ccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 555555555555556664 34688888988899999999988887776544
No 423
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.65 E-value=2e+02 Score=25.76 Aligned_cols=116 Identities=12% Similarity=0.032 Sum_probs=54.6
Q ss_pred cCChHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHhcCCcchH
Q 045105 36 NGLVLEALECLERMSSLDNETPNL-VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL-PACARLQKLSLG 113 (601)
Q Consensus 36 ~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a 113 (601)
..++..|+..+.+... ..|++ .-|..=+..+.+..+|+.+..==.+..+ +.|+..--...+ .+......++.|
T Consensus 23 ~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred hhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3445555555544443 23444 3334455555556666555443333333 344444333333 233444555666
Q ss_pred HHHHHHHH----HhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 114 KEFHGYIT----RNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 114 ~~~~~~~~----~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
...+.... ...+.+-......|..+--..-...+..++.++..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 55555442 22233444455555555444444555555555444
No 424
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=48.57 E-value=2.9e+02 Score=27.53 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCCCHhHH--HHHHHHhcCCCchhhHHHHH
Q 045105 319 LFSEMLSLDLTPDIYTV--GIILSACSSLATMERGKQVH 355 (601)
Q Consensus 319 ~~~~~~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~ 355 (601)
+.+.+.+.|..++..++ ++.+.-|...|.++-...++
T Consensus 165 I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 165 IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence 33344444555554443 56677777777776554444
No 425
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.45 E-value=2.8e+02 Score=27.39 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=39.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 045105 372 ALVDMYAKCGSLKHARLAYKRISTP---DLVSQNAMLTAYAMHGHGKEGIAHFRRILASG 428 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 428 (601)
.|+.-|...|+..+|.++.+++.-| ....+.+++.+.-+.|+-...+.++++....|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4666777778888888887776643 33567777777777777766677777666655
No 426
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.94 E-value=22 Score=28.17 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=10.4
Q ss_pred CCcchHHHHHHHHHHhcCCCc
Q 045105 108 QKLSLGKEFHGYITRNGFMSN 128 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g~~~~ 128 (601)
|.-..|-.+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 444445555555555554444
No 427
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.88 E-value=1e+02 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=14.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 045105 508 GGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
......|++++|.+.+++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHHH
Confidence 3345567777777777777665
No 428
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.32 E-value=33 Score=23.04 Aligned_cols=26 Identities=8% Similarity=0.154 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHh
Q 045105 536 NYVMLANLFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~l~~~~ 561 (601)
-...++..|...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445556666666666666666553
No 429
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.30 E-value=2.5e+02 Score=26.21 Aligned_cols=44 Identities=5% Similarity=-0.021 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 045105 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (601)
.++|+.|.+.++.|.-.+|.-+.-.+.+.=.+.....+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555555556666666655555555555555556666665544
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.21 E-value=38 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=24.2
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 480 RAGELGEAYEFIKKI-PMAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
+.|+.++|..+|+.+ ...|+ +.....+....-..++.-+|.+.|-++....|.+..++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 445555555555433 22332 22222222222223444455555555555555444443
No 431
>PRK09857 putative transposase; Provisional
Probab=46.20 E-value=1.7e+02 Score=27.38 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccC
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKS 568 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 568 (601)
+..++......++.+.-.++++.+.+..|.......+++.-+.+.|.-+++.++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 345555555667777778888888777776667777888888888998899999999999987543
No 432
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=46.11 E-value=1.5e+02 Score=23.45 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGA-LLGGCVSHGNLEFGQIAADRL 526 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~ 526 (601)
.+..++.-++.-.|..++|.+++....--++....|. ++..|....+-++..++-++.
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445566666666777777777766654444444433 566666666655555544443
No 433
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.06 E-value=59 Score=18.90 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=6.8
Q ss_pred HHHHhcCChhHHHHH
Q 045105 508 GGCVSHGNLEFGQIA 522 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~ 522 (601)
-.+...|++++|..+
T Consensus 9 ~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 9 YNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHTT-HHHHHHH
T ss_pred HHHHHHhhHHHHHHH
Confidence 334444555555555
No 434
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.77 E-value=2.6e+02 Score=26.16 Aligned_cols=87 Identities=9% Similarity=0.121 Sum_probs=54.6
Q ss_pred HHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh----------hcCChHHH
Q 045105 418 IAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS----------RAGELGEA 487 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A 487 (601)
.++|+.|.+.++.|.-+.+..+.-.+.+.=.+...+.+|+.+..... -|..|+..|+ -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56777788888888887777766666777777788888866554322 2444444443 35777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH
Q 045105 488 YEFIKKIPMAPDSVMWGALLGGC 510 (601)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~ 510 (601)
+++++..+ ..|....-++...+
T Consensus 338 mkLLQ~yp-~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 338 MKLLQNYP-TTDISKMLAVADSL 359 (370)
T ss_pred HHHHhcCC-CCCHHHHHHHHHHH
Confidence 77777765 44544444333333
No 435
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.72 E-value=2.7e+02 Score=26.36 Aligned_cols=109 Identities=12% Similarity=-0.073 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHhcCC----CcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 045105 449 IKTGSEFFDLMAYYDV----KPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAAD 524 (601)
Q Consensus 449 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 524 (601)
.+.|.+.|+.....+. ..++.....++....+.|..++-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 5577777755444311 334455566666777777766655555555445677778888888888888888888888
Q ss_pred HHHhcCCC-CCchHHHHHHHHHHcCCH--HHHHHHHH
Q 045105 525 RLIELEPN-NTGNYVMLANLFAYAGRW--SDLARTRQ 558 (601)
Q Consensus 525 ~~~~~~p~-~~~~~~~l~~~~~~~g~~--~~A~~~l~ 558 (601)
.+...+.- +......+. .+...+.. +.+.++++
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHHH
Confidence 88874311 222333333 33323333 55555543
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.55 E-value=1.4e+02 Score=30.99 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCCeeehHHH
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFSIK------NEVSCNTIIVGYCENGNVA------EARELFDQMEHLGVQRGIISWNSM 201 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~~~~l 201 (601)
+|+.+|...|++..+.++++.+... -...||..|+.+.+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7778888888888888888776632 1335777777777777654 2333333332 44566677766
Q ss_pred HHHHHh
Q 045105 202 ISGYVD 207 (601)
Q Consensus 202 i~~~~~ 207 (601)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.51 E-value=28 Score=32.08 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 045105 163 CNTIIVGYCENGNVAEARELFDQMEHLGVQRG 194 (601)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 194 (601)
|+..|...++.||+++|+.++++.++.|+.--
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~A 291 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSA 291 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchH
Confidence 67888888888888888888888888876443
No 438
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.06 E-value=1.7e+02 Score=30.51 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=54.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcC-CCCCChhhHHHHHHHHhhcCChH------HHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 28 SVVTACAANGLVLEALECLERMSSLD-NETPNLVSWSAVIGGFTQNGYDE------EAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 28 ~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
+|+.+|..+|++..+.++++.+.... +.+.-...||..|+...+.|.++ .+.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999877531 23334567899999999999775 3344444443 45577788887
Q ss_pred HHHHHh
Q 045105 101 LPACAR 106 (601)
Q Consensus 101 l~~~~~ 106 (601)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 439
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.78 E-value=2.1e+02 Score=30.04 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTFVGGALV 273 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 273 (601)
.++..+|.+.+-.+...+..|...-...|.
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp ------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 356666666666666666656554444333
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.77 E-value=48 Score=22.24 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=17.2
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 58 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
|..-.-.+|.+|...|++++|.+++.++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344556666666666666666666543
No 441
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.54 E-value=54 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 515 NLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
.++.|..++++.....| ++..+...+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 46788888888888877 6666665543
No 442
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.38 E-value=1.1e+02 Score=26.06 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=19.0
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045105 477 LLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVS 512 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 512 (601)
.|.+.|.+++|.+++++.-..|+......-+....+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~ 155 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 455666666666666665335554444444433333
No 443
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.36 E-value=3.6e+02 Score=27.37 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH
Q 045105 56 TPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 56 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 135 (601)
+.|-...-+++..+..+-.+.-+..+-.+|.+- ..+...|..++..|... ..++...+++.+.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 344555566677777777777777777777764 34556677777777766 556666777777765422 22223333
Q ss_pred HHHHHhcCCHHHHHHHHhhcC
Q 045105 136 VDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~ 156 (601)
...|-+ ++..++..+|....
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHH
Confidence 333333 66666666665543
No 444
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.64 E-value=3.2e+02 Score=26.68 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCCCCCC---HHHHHHHHHH----HHhcCChhHHHHHHHHHHhcCC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKIPMAPD---SVMWGALLGG----CVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~p 531 (601)
..|.|++.|...+.++.|.++..+.. -|+ ..-|...+.. .+-.+++..|.+.+-.+..+.|
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 34556666666666777766666653 221 1122222111 1234556666666555555444
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.62 E-value=1.3e+02 Score=24.60 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=33.5
Q ss_pred HHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC
Q 045105 420 HFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG 482 (601)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 482 (601)
+.+.+.+.|++++..- ..++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4455556666555432 2345555556666777777777666665555444333334444443
No 446
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=42.66 E-value=1.9e+02 Score=27.37 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC-------CCCchhH--HHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCeee-h
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFS-------IKNEVSC--NTIIVGYCENGNVAEARELFDQMEH-----LGVQRGIIS-W 198 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~-~ 198 (601)
.++...-+.+|.++|+++++++. +|+.+.| ..+.+.+...|+..++.+++++.++ .|++|++++ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 33444445667778887777765 4455544 3455667778888888888888876 577775543 5
Q ss_pred HHHHHHHH
Q 045105 199 NSMISGYV 206 (601)
Q Consensus 199 ~~li~~~~ 206 (601)
+.+-.-|.
T Consensus 160 Y~lssqYy 167 (380)
T KOG2908|consen 160 YSLSSQYY 167 (380)
T ss_pred HHHHHHHH
Confidence 55544433
No 447
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.48 E-value=2.7e+02 Score=25.51 Aligned_cols=158 Identities=11% Similarity=0.081 Sum_probs=73.3
Q ss_pred hcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH----HHHHHHcCCCCCHhhHHHHHHHHHhcCCc
Q 045105 35 ANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM----LFRMQAEGLEPNARTLSSVLPACARLQKL 110 (601)
Q Consensus 35 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (601)
+++++++|++++..- ...+.+.|+...|-++ ++-+.+.+.++|......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~G----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHH----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 456777777776651 2234445554443332 33334445666665555555555444322
Q ss_pred c-hHHHHHHHHHH---hc--CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 045105 111 S-LGKEFHGYITR---NG--FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFD 184 (601)
Q Consensus 111 ~-~a~~~~~~~~~---~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (601)
+ .-..+.+.+++ .| ..-++.....+...|.+.|++..|+.-|-.-..++...+..++..+...|...++
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----- 140 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----- 140 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-----
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-----
Confidence 1 22333333332 22 2346678888889999999999988766544333333332233333322322222
Q ss_pred HHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHH
Q 045105 185 QMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 185 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 223 (601)
|...-.++ --|.-.++...|...+....+
T Consensus 141 ---------dlfi~RaV-L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ---------DLFIARAV-LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ---------HHHHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 11111222 234456667777776666554
No 448
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.98 E-value=1.4e+02 Score=23.33 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh-------cCCCCCc----hHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 500 SVMWGALLGGCVSHGNLEFGQIAADRLIE-------LEPNNTG----NYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
..++..|-.++...|++++++...+++.. ++.+.-. +...-+.++...|+.++|...|+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 34555566666677777666655554443 3332222 333455577889999999998873
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.97 E-value=1.3e+02 Score=27.38 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=28.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIELEPN------NTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
+..-|...|+++.|.+.++.+...... ...+...+..|+...|+.++...+.=+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334455556666666666555433111 2234445666666677777666664443
No 450
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.56 E-value=2.7e+02 Score=25.12 Aligned_cols=162 Identities=10% Similarity=0.074 Sum_probs=78.4
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc-cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc-
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH-AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA- 481 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 481 (601)
++..+-+.|+++++...++++...+...+..--+.|-.+|-. -|....+.+++..+....-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Confidence 455666778888888888888887666666555555555422 233444555553332221111112233333333211
Q ss_pred -----CChHHHHHHHHhC--C--CCCCHHHHHHHHHH-HH----h--cC-----ChhHHHHHHHHHHhc-----CCCCCc
Q 045105 482 -----GELGEAYEFIKKI--P--MAPDSVMWGALLGG-CV----S--HG-----NLEFGQIAADRLIEL-----EPNNTG 535 (601)
Q Consensus 482 -----g~~~~A~~~~~~~--~--~~~~~~~~~~l~~~-~~----~--~g-----~~~~a~~~~~~~~~~-----~p~~~~ 535 (601)
.--.+.+.+++.. + ..+...+|-.-+.| |. . .| -.+.|.+.|+++.+. .|.+|.
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Confidence 1123445555553 1 12222222222211 11 1 11 236777777777653 555553
Q ss_pred hHHH----HHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 536 NYVM----LANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 536 ~~~~----l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
-+.. -+-.|--.|+.++|.++.++..+..+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 2222 22233458999999999888766554
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.63 E-value=67 Score=21.85 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=32.1
Q ss_pred CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 396 PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
|....++.++..+++..-.++++..+.+....| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455667777777777777788888888888877 3455555555555544
No 452
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.36 E-value=4e+02 Score=30.17 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=15.4
Q ss_pred CCCCCCCchhHHHHHhhCC
Q 045105 1 MYGKCGSLDDAKKVFKMMP 19 (601)
Q Consensus 1 ~~~~~g~~~~A~~~~~~~~ 19 (601)
+|...|+.-+|++.|.+..
T Consensus 929 ~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeecCCchHHHHHHHHHHh
Confidence 3678888999999888765
No 453
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=40.04 E-value=1.8e+02 Score=24.79 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC----C-------hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 045105 39 VLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG----Y-------DEEAIGMLFRMQAEGLEPNARTLSSVLPACARL 107 (601)
Q Consensus 39 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 107 (601)
+++|+.-|++... ..|-...++..+..+|...+ + +++|.+.|++... ..|+...|+.-+....
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH--
Confidence 4556666666665 33444566777777666533 2 4555556665555 4889889988887764
Q ss_pred CCcchHHHHHHHHHHhcC
Q 045105 108 QKLSLGKEFHGYITRNGF 125 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~~g~ 125 (601)
+|-+++.++.+.+.
T Consensus 125 ----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGL 138 (186)
T ss_dssp ----THHHHHHHHHHSSS
T ss_pred ----hhHHHHHHHHHHHh
Confidence 35666666666553
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.99 E-value=1.5e+02 Score=27.34 Aligned_cols=95 Identities=9% Similarity=0.116 Sum_probs=55.1
Q ss_pred CcCchHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHhcCCCC-
Q 045105 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKI-------PMAPDSVMWGALLGG---CVSHGNLEFGQIAADRLIELEPNN- 533 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~- 533 (601)
.-....+..+.+-|+..++.+.+.+.+.+. +.+-|. +-+.++. |....-+++-++..+-+++...+-
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv--~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV--FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh--HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 334556777888899999999998887654 333333 2232222 333334566677777777776531
Q ss_pred -CchHHHHHH-HHHHcCCHHHHHHHHHHHh
Q 045105 534 -TGNYVMLAN-LFAYAGRWSDLARTRQKMK 561 (601)
Q Consensus 534 -~~~~~~l~~-~~~~~g~~~~A~~~l~~~~ 561 (601)
..-|-..-. -+....++.+|-.++-+..
T Consensus 190 RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 190 RRNRYKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 112222222 2345577888888776543
No 455
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.59 E-value=1.5e+02 Score=21.63 Aligned_cols=36 Identities=25% Similarity=0.148 Sum_probs=21.4
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChh
Q 045105 379 KCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 379 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 415 (601)
..|+.+.|..++..+. ..+..|..++.++...|...
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 4466666666666666 55556666666666555543
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.15 E-value=89 Score=28.37 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=36.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHH----cC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHH
Q 045105 64 AVIGGFTQNGYDEEAIGMLFRMQA----EG-LEPNARTLSSVLPACARLQKLSLGKEFHGYI 120 (601)
Q Consensus 64 ~li~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 120 (601)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..+....|+.+....+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456677788888888888877742 22 2344456666667777777777766654443
No 457
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.89 E-value=3.2e+02 Score=25.35 Aligned_cols=48 Identities=15% Similarity=-0.011 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC---------------CHHHHHHHHHHHhhcCC
Q 045105 515 NLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG---------------RWSDLARTRQKMKDRRM 565 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~l~~~~~~~~ 565 (601)
|.++|...+.++.+... ......+. ++...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 66777777777777654 44444444 555554 66666666666665554
No 458
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.77 E-value=42 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=24.9
Q ss_pred HHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
..-|.-..|-.+|.+|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446777899999999999988875 55666543
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.36 E-value=60 Score=30.05 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 045105 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTL 97 (601)
Q Consensus 62 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 97 (601)
||.-|..-.+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456677777777777777777777776654444444
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.19 E-value=3.8e+02 Score=27.43 Aligned_cols=127 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccC
Q 045105 373 LVDMYAKCGSLKHARLAYKRIS-----TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAG 447 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (601)
++.-|.+.+++++|..++..|. ..-..+.+.+.+.+.+..-.++....++.+...-..|....-.....-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 045105 448 SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIA 522 (601)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 522 (601)
=.+-|.++|..+..+ +++++|..+--.++ +...+.-+-......|+.+.|..+
T Consensus 493 V~~~aRRfFhhLLR~-------------------~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~~A 545 (545)
T PF11768_consen 493 VSDLARRFFHHLLRY-------------------QRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAEVA 545 (545)
T ss_pred HHHHHHHHHHHHHHh-------------------hHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhhcC
No 461
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.64 E-value=3e+02 Score=24.50 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCc-----CchHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCH
Q 045105 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKP-----SLKHYTCMVDLLSRAGELGEAYEFIKKI---PMAPDS 500 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~ 500 (601)
+.+...-++.|+--|.-...+.+|...|.. ..|+.| +...-..-++.....|+.++|++.+..+ -+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Q ss_pred HHHHHHHHH----HHhcCChhHHHHHHH
Q 045105 501 VMWGALLGG----CVSHGNLEFGQIAAD 524 (601)
Q Consensus 501 ~~~~~l~~~----~~~~g~~~~a~~~~~ 524 (601)
..+-.|..- ..+.|..++|++..+
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 462
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.18 E-value=2.5e+02 Score=23.62 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=34.2
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 85 MQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+++.|++++..-. .++..+....+.-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 4455665555433 3444444445566777777777777766665555555555555553
No 463
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.16 E-value=3.1e+02 Score=24.53 Aligned_cols=75 Identities=15% Similarity=0.060 Sum_probs=33.1
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHH
Q 045105 380 CGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDL 458 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (601)
.+++++|...+-...-+ ..--.-++.++...|+...|+.+++...-..- +......++.. ...+.+.+|..+-+.
T Consensus 91 ~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred hHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 45556665555333211 11112355555556666666666655432111 11122222222 334556666555433
No 464
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.02 E-value=1.2e+02 Score=26.37 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH-HHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCC
Q 045105 500 SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN-LFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRD 578 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 578 (601)
......++..|...||++.|-+++-.++...+-|....-.++. ++.+.+.-....++++.|...-.....-...+.-..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~ 120 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRI 120 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhc
Q ss_pred ceeeeecCCCCC
Q 045105 579 EIHKFRASDRSH 590 (601)
Q Consensus 579 ~~~~~~~~~~~~ 590 (601)
...-+.+|.+.|
T Consensus 121 ~~pvfrsGs~t~ 132 (199)
T PF04090_consen 121 IAPVFRSGSRTH 132 (199)
T ss_pred ccccccCCCccc
No 465
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.77 E-value=3.5e+02 Score=25.03 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehH-------HHHHHHHhCCChhHHHHHHHHH---HHcCCCCCChhhHH
Q 045105 166 IIVGYCENGNVAEARELFDQMEHLGVQRGIISWN-------SMISGYVDNSLYDEAFSMFRDL---LMRDGIEPTSFTFG 235 (601)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~~---~~~~~~~p~~~~~~ 235 (601)
+.+..++.+++++|+..+.++...|+..|..+.| .+...|...|++...-++.... ...-.-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445566778888888888888888776665443 4667778888766554444322 21111112233455
Q ss_pred HHHHHhccc-CCHHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 236 SVLIACADM-NSLRKGKEIHALAIALGLQSD-----TFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 236 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
+++..+... ..++...++.....++..+-. ...-..++..+.+.|.+.+|+....
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555433 345555555555544332222 1223457888899999999988777
No 466
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.30 E-value=1.7e+02 Score=21.28 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 454 EFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
++|+.....|+..|+.+|..+++.+.-.=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666677777777777777777665555666666666665
No 467
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.10 E-value=1.7e+02 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
++|+.....|+..|+.+|..++....-+=-.+...++++.+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45555555555555555555555444433344444444433
No 468
>PRK14700 recombination factor protein RarA; Provisional
Probab=35.86 E-value=3.7e+02 Score=25.16 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=43.0
Q ss_pred HHHHHHHH---cCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch-----HHHHHHHHHHHhcCC
Q 045105 403 AMLTAYAM---HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI-----KTGSEFFDLMAYYDV 464 (601)
Q Consensus 403 ~ll~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~ 464 (601)
-++.++.+ ..+.+.|+-++-+|++.|-.|....-..++-+...-|.- ..|...++....-|.
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34555543 467899999999999999888888877778877776632 234444455455554
No 469
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.64 E-value=45 Score=31.35 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=24.3
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDL 458 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 458 (601)
..|.++.|++.|...+... +|....|.--.+++.+.+++..|++=+..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~ 173 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDF 173 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhh
Confidence 3455555555555555542 33334444444555555555555555433
No 470
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.19 E-value=6.4e+02 Score=27.65 Aligned_cols=128 Identities=13% Similarity=0.030 Sum_probs=66.1
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHH---HHHHhhchhcCCCCChhh
Q 045105 237 VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENI---ENLLGKMKEDGFEPNVYT 313 (601)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~g~~~~~~~ 313 (601)
+-..+...|+.+....+-..+.. |..++..++..+.+.+|++++..-... .+....+.....
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p------ 574 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSP------ 574 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCc------
Confidence 33344455666555544443332 456777788888888888777632100 000001111111
Q ss_pred hhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCC---chhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 314 WNAMQLFSEMLSLDLTPDIYTVGIILSACSSLA---TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 314 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
-.........+-.-+..-...++..+.+.+ ....+..+++.....-..-++.++|.++..|++..+
T Consensus 575 ---~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 575 ---KETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred ---HHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 122222223333334444555566666553 344555556555555445678888888888877544
No 471
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.08 E-value=3.3e+02 Score=24.35 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=53.8
Q ss_pred HHHcCChhhHHHHHHHHHHCCCC-ccHH--hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 408 YAMHGHGKEGIAHFRRILASGFR-PDHI--SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~-p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
....|+++.|+.+.+-.++.|.+ |+.+ ++-+++. ++....-......|-+.++.....+...-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~--- 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFLRVFLDLTTEW--- 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC---
Confidence 45678999999999999998843 4432 2222221 22222222223444444444332222211111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCC
Q 045105 485 GEAYEFIKKIPMAPDSVMWGALLGGCV---------SHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 485 ~~A~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~p 531 (601)
.|+......-|..+...+. ..++...|...++++.+++|
T Consensus 162 --------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 162 --------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred --------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 1111112223444444442 33567789999999999988
No 472
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=34.86 E-value=1.4e+02 Score=20.02 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=23.6
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHH-----hhcCChHHHHHH
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGF-----TQNGYDEEAIGM 81 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~-----~~~~~~~~a~~~ 81 (601)
-..|++-+|-++++.+-.. ...+....+..||... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~-~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKA-APGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCC-T-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHH-CCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456677777777766542 2223444455554432 245565555544
No 473
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=34.77 E-value=2.5e+02 Score=28.40 Aligned_cols=55 Identities=4% Similarity=0.036 Sum_probs=33.1
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
..|-..+.-|..++++++|.++.+...+ ...|.++.....+..++.-++..+..+
T Consensus 574 ~py~~iL~e~~sssKWeqavRLCrfv~e------qTMWAtlAa~Av~~~~m~~~EiAYaA~ 628 (737)
T KOG1524|consen 574 NPYPEILHEYLSSSKWEQAVRLCRFVQE------QTMWATLAAVAVRKHQMQISEIAYAAA 628 (737)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhccc------hHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 3466666667777777777777765432 335666665555666655555555444
No 474
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.44 E-value=1e+02 Score=18.24 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.+|..|+.+-...++++.|.+=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888999999999888887654
No 475
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.32 E-value=1.9e+02 Score=22.90 Aligned_cols=43 Identities=7% Similarity=0.024 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCcchHHHHHH
Q 045105 76 EEAIGMLFRMQAEGLEPNA-RTLSSVLPACARLQKLSLGKEFHG 118 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 118 (601)
+...++|..|.+.|+-... ..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467788888888765443 346666667777889999988876
No 476
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.94 E-value=2.6e+02 Score=22.82 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhc-CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 84 RMQAEGLEPNARTLSSVLPACARL-QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44556666555433 334444443 4566788888888777766666655555566666553
No 477
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.93 E-value=4e+02 Score=24.94 Aligned_cols=71 Identities=7% Similarity=0.031 Sum_probs=37.9
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCChh----hHHHHHHHhccc-CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 045105 206 VDNSLYDEAFSMFRDLLMRDGIEPTSF----TFGSVLIACADM-NSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQ 280 (601)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (601)
.+...+++.....++-.+ ..-.|+.. .|..++++--=. +.---|.+.++++ ..|..|+.++|..|
T Consensus 266 s~e~p~~evi~~VKee~k-~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMK-RNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHH-hcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCC
Confidence 344456666666655555 33445543 355555542211 1111233344333 35788999999988
Q ss_pred CHHHHH
Q 045105 281 DLVAAQ 286 (601)
Q Consensus 281 ~~~~a~ 286 (601)
+.+-.+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 876553
No 478
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.65 E-value=1.2e+02 Score=31.26 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.+.+--.|....+.|.|.++++++.+.+|.++-.-.....+....|+-++|+..+......
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 4444455566677788888888888887777777777777777778888888777666544
No 479
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.14 E-value=4.7e+02 Score=25.56 Aligned_cols=28 Identities=7% Similarity=-0.189 Sum_probs=18.0
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCccH
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRPDH 433 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 433 (601)
..+.+.+++..|.++|+++....++|+.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhh
Confidence 3455667777777777777766544443
No 480
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.93 E-value=5.3e+02 Score=26.05 Aligned_cols=219 Identities=8% Similarity=0.005 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH--HHHhcC----CC-----------C
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR--LAYKRI----ST-----------P 396 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~----~~-----------~ 396 (601)
...+....-...+.++...+.+..+...|......+++.-+..|.+.|....-. +-++.+ .. .
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~ 98 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQ 98 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhc
Confidence 333344444567888999999999999888877777888888888877654321 111111 11 1
Q ss_pred ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHH-----HHHHHHhccCchHHHHHHHHHH---Hhc-CCCcC
Q 045105 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFL-----SALSACVHAGSIKTGSEFFDLM---AYY-DVKPS 467 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~---~~~-~~~~~ 467 (601)
+...+......|.....+..|+++...+... +.|-...+. .....+....+.++|+.++.-+ ... ...|+
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 1122222333344555666777766655443 222111111 1112233444556666554322 211 11111
Q ss_pred c--hHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 L--KHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
. .+-+ ...+.+....|..-+-.. .|.......-+.++....+...+.+-.+-......+.+.....-...+.
T Consensus 178 gn~~~~n----n~~kt~s~~aAe~s~~~a--~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY 251 (696)
T KOG2471|consen 178 GNHIPAN----NLLKTLSPSAAERSFSTA--DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEY 251 (696)
T ss_pred ccccchh----hhcccCCcchhcccchhh--ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHH
Confidence 1 1111 122233333333222211 1112222222334444444444444444444444445666666677777
Q ss_pred HcCCHHHHHHHHHH
Q 045105 546 YAGRWSDLARTRQK 559 (601)
Q Consensus 546 ~~g~~~~A~~~l~~ 559 (601)
-.|++..|.+++..
T Consensus 252 ~~gn~~kA~KlL~~ 265 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLV 265 (696)
T ss_pred HhcchHHHHHHHHh
Confidence 88888888887654
No 481
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.60 E-value=3.7e+02 Score=29.30 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=102.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHH
Q 045105 372 ALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKT 451 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (601)
++|..+.+.|-++-|..+.+.-.. -..-....|+.+.|++.-..+ -+..+|..|.....+.|+.+-
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~t--------RF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERT--------RFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcch--------heeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHH
Confidence 456666777877777666544321 011234567788777654432 245688889998889999999
Q ss_pred HHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 452 GSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
|+..|+..+ .|+.|--.|.-.|+.++-.++.+.++.+.|.... ...-.-.||+++-..+++..-.. |
T Consensus 691 aEm~yQ~~k---------nfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~---~qnalYl~dv~ervkIl~n~g~~-~ 757 (1202)
T KOG0292|consen 691 AEMCYQRTK---------NFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQ---FQNALYLGDVKERVKILENGGQL-P 757 (1202)
T ss_pred HHHHHHHhh---------hhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHH---HHHHHHhccHHHHHHHHHhcCcc-c
Confidence 988886633 2455556777888888888777766544444321 22223347777766666554333 1
Q ss_pred CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccC
Q 045105 532 NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKS 568 (601)
Q Consensus 532 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 568 (601)
-+|. .-...|.-++|.++.++..++++..+
T Consensus 758 ---layl----ta~~~G~~~~ae~l~ee~~~~~~~lP 787 (1202)
T KOG0292|consen 758 ---LAYL----TAAAHGLEDQAEKLGEELEKQVPSLP 787 (1202)
T ss_pred ---HHHH----HHhhcCcHHHHHHHHHhhccccCCCC
Confidence 1221 12346888999999998887665444
No 482
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.02 E-value=5.9e+02 Score=26.33 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=110.9
Q ss_pred CCCchhhHHHHHHHHHHhC--------CCCchhHHhHH---HHHHHhcCChHHHHHHHhcCC-------CC---------
Q 045105 344 SLATMERGKQVHAYAIRCG--------YDSDVHIGTAL---VDMYAKCGSLKHARLAYKRIS-------TP--------- 396 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~-------~~--------- 396 (601)
....++++...|...+... +..++.+..+| ...+...|+.+.+..+.++.. .|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 3445666766666555431 12234444444 445667788776665554322 11
Q ss_pred --------ChhhHHHH---HHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh-ccCchHHHHHHHHHH---Hh
Q 045105 397 --------DLVSQNAM---LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV-HAGSIKTGSEFFDLM---AY 461 (601)
Q Consensus 397 --------~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~---~~ 461 (601)
|...|-++ |..+.+.|-+..|+++.+-+.+....-|+.....+|+.|+ +..++.-.+++++.. ..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 22223222 4556667778888887777777543334556666666653 666777777766443 22
Q ss_pred cCCCcCchHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCchH
Q 045105 462 YDVKPSLKHYTCMVDLLSRAGE---LGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN-NTGNY 537 (601)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~ 537 (601)
...-|+..--.+|...|.+... .+.|...+.++. +--+.+..-|+..+.-.-+ .+...++-...-.++ -..++
T Consensus 410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl-~~~P~vl~eLld~~~l~~d--a~~~~~k~~~~~a~~~e~pal 486 (665)
T KOG2422|consen 410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL-KHHPLVLSELLDELLLGDD--ALTKDLKFDGSSAENSELPAL 486 (665)
T ss_pred HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HhCcHHHHHHHHhccCCch--hhhhhhcccccccccccchHH
Confidence 3344554444455555555444 344555555442 2223334444444433221 222222222111121 34678
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHhh
Q 045105 538 VMLANLFAYAG----RWSDLARTRQKMKD 562 (601)
Q Consensus 538 ~~l~~~~~~~g----~~~~A~~~l~~~~~ 562 (601)
..++.+|+... +..+++.+++....
T Consensus 487 ~~lv~lY~~r~~~vWk~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 487 MLLVKLYANRNEEVWKLPDVLSFLESAYH 515 (665)
T ss_pred HHHHHHHHhhhhHhhcChHHHHHHHHHHH
Confidence 88888887644 34566666666654
No 483
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=31.79 E-value=1.9e+02 Score=20.60 Aligned_cols=81 Identities=20% Similarity=0.120 Sum_probs=35.6
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHHhcC
Q 045105 32 ACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR---TLSSVLPACARLQ 108 (601)
Q Consensus 32 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~ 108 (601)
..++.|+++-...+++. +...+. -+..+...+..|+. ++++.+.+.|..++.. -++.+..+ +..|
T Consensus 3 ~A~~~~~~~~~~~ll~~-----~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~ 70 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLEK-----GADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYA-AENG 70 (89)
T ss_dssp HHHHTTTHHHHHHHHHT-----TSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTT
T ss_pred HHHHcCCHHHHHHHHHC-----cCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHH-HHcC
Confidence 34555666555555553 222332 11234444455553 4444455555555443 22333332 2223
Q ss_pred CcchHHHHHHHHHHhcCCCc
Q 045105 109 KLSLGKEFHGYITRNGFMSN 128 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~ 128 (601)
+ .++++.+.+.|..++
T Consensus 71 ~----~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 71 N----LEIVKLLLEHGADVN 86 (89)
T ss_dssp H----HHHHHHHHHTTT-TT
T ss_pred C----HHHHHHHHHcCCCCC
Confidence 3 345555666665544
No 484
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.75 E-value=95 Score=28.82 Aligned_cols=80 Identities=9% Similarity=0.077 Sum_probs=50.7
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHH
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGA-LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVM 539 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 539 (601)
.+.-|+..|...+.-..+.|.+.+.-.++.+. ...| |+..|-. --.-+...++++.+..++.+...++|++|..+..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34455556655555555566666666666655 2234 4444432 1222456789999999999999999998887776
Q ss_pred HHH
Q 045105 540 LAN 542 (601)
Q Consensus 540 l~~ 542 (601)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 544
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.34 E-value=2.3e+02 Score=23.85 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCC
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNS 209 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 209 (601)
-.|.++++.+.+.+...+..|-.--+..+.+.|
T Consensus 42 lSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 42 ISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444444443333333333333333333
No 486
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=31.15 E-value=4.4e+02 Score=24.54 Aligned_cols=51 Identities=12% Similarity=0.305 Sum_probs=23.3
Q ss_pred CcCchHHHHHHHHhhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC
Q 045105 465 KPSLKHYTCMVDLLSRAGELGEAYEFIKKIP----MAPDSVMWGALLGGCVSHGN 515 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 515 (601)
.++..+...+++.+++.+++.+-.++++... -.-|...|..++..-...||
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD 253 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGD 253 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCC
Confidence 3344444444455555555555555444431 11244445555555555554
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.12 E-value=2.1e+02 Score=21.81 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhc--CChHHHHHHHHHHHHcCC
Q 045105 27 NSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQN--GYDEEAIGMLFRMQAEGL 90 (601)
Q Consensus 27 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~ 90 (601)
..++..|...++.++|...+.++.. . .-....-..++...... ...+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~--~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL--P-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT---G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC--C-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 3466677777999999998888633 1 11112222333333332 222345556666665543
No 488
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.03 E-value=6.5e+02 Score=26.45 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred hhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 9 DDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 9 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
+-+....+.+.++....|..|+..+.. =+.+.-.++++++.. .. ...+..+++++...|......-+.+.+...
T Consensus 296 ~L~~~~~~~~~~~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 296 HLVQDIASDVQEPAAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-KK----KKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q ss_pred CCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch-------HHHHHHHHHHHhcCCH------HHHHHHHhh
Q 045105 89 GLEP-NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP-------FVVNGLVDVYRRCGDM------LSALKIFSK 154 (601)
Q Consensus 89 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~------~~a~~~~~~ 154 (601)
.+.+ .....-..+-...+.-..+-...+++.+......+.. ..+..+++-+|..... +.....+.+
T Consensus 370 ~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~ 449 (574)
T smart00638 370 KITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHE 449 (574)
T ss_pred CCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q ss_pred cC-----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhC--CChhHHHHHHHHHHHcCCC
Q 045105 155 FS-----IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDN--SLYDEAFSMFRDLLMRDGI 227 (601)
Q Consensus 155 ~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~ 227 (601)
.. ..|..--...|.+++..|.......+-.-+. .....+...-...+.++.+. ..++.+..++-.+.. ..-
T Consensus 450 ~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-n~~ 527 (574)
T smart00638 450 LLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-NRA 527 (574)
T ss_pred HHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-CCC
Q ss_pred CCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 045105 228 EPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMY 276 (601)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 276 (601)
.+...-..+++......-.......+...+.. +++..+.+.....+
T Consensus 528 e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~---E~~~QV~sfv~S~l 573 (574)
T smart00638 528 EPPEVRMAAVLVLMETKPSVALLQRIAELLNK---EPNLQVASFVYSHI 573 (574)
T ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHhh---cCcHHHHHHhHHhh
No 489
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.91 E-value=8.1e+02 Score=27.59 Aligned_cols=57 Identities=11% Similarity=-0.095 Sum_probs=23.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
-...+.++.+.+.. ++...+..+-..|+..+-...+.++.+.+....+...+..+.+
T Consensus 824 R~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 824 RQGAARALAGAAAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHhcccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 33344444444432 2333333222245555555555555543222344444444444
No 490
>PRK02287 hypothetical protein; Provisional
Probab=30.52 E-value=3.3e+02 Score=22.95 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWG-ALLGGCVSHGNLEFGQIAADRLI 527 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~ 527 (601)
+..++.-++.-.|..++|.++++...--++....| .++..|.+..+-++..++-++.+
T Consensus 109 ~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 109 SVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 44555555666666666666666554333333332 25556666555555555544443
No 491
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.42 E-value=5.3e+02 Score=25.31 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=53.0
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHhcCCC------CChhhHHHHHHHHHHcCChhhHHHHHHHHHHC---------CCCcc
Q 045105 368 HIGTALVDMYAKCGSLKHARLAYKRIST------PDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS---------GFRPD 432 (601)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------~~~p~ 432 (601)
..+.-+.+.|..+|+++.|.+.|-+... ..+..|-.+|..-.-.|+|.....+..+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3455677888889999999998888662 22234555556666677777777776666553 12233
Q ss_pred HHhHHHHHHHHhccCchHHHHHHH
Q 045105 433 HISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
...+..+..-+ .+++..|.+.|
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHH
Confidence 33344444433 33667776666
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.36 E-value=1.5e+02 Score=22.74 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=31.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
++..+...+..-.|.++++++.+.+..++..|.-..++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555666778888888887776667776666667776666543
No 493
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.24 E-value=60 Score=32.07 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=76.3
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 475 VDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALL-GGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 475 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
.+-+.+.+.++.|..++.++ ...|+-..|-+.- .++.+.+++..|+.-+.++++.+|.....|..-+.++...+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 44566788999999998877 6778766655544 778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC
Q 045105 553 LARTRQKMKDRR 564 (601)
Q Consensus 553 A~~~l~~~~~~~ 564 (601)
|...|+....-.
T Consensus 91 A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 91 ALLDLEKVKKLA 102 (476)
T ss_pred HHHHHHHhhhcC
Confidence 999998876544
No 494
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=30.02 E-value=5.3e+02 Score=25.16 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=75.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHhCCCCC------CHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-------ch
Q 045105 472 TCMVDLLSRAGELGEAYEFIKKIPMAP------DSV--MWGALLGGCVSHGNLEFGQIAADRLIELEPNNT-------GN 536 (601)
Q Consensus 472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~ 536 (601)
..|...+...|+.++|..++.+.+++. ... ..--=++.|...+|+-.|.-+-+++....-+.+ .-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 346677888999999999998885331 111 111234567788999999988888877633222 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCCceeee
Q 045105 537 YVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKF 583 (601)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (601)
|..+.....+.+.+-++-+.++...+-|..+....-|..+-.-+..|
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f 261 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSF 261 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeE
Confidence 56677777788999999999999987776665333355443333333
No 495
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.90 E-value=3e+02 Score=27.16 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=16.1
Q ss_pred eeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 195 IISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
+.+|..+.-+|.-.+++.+|.+.|...+
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666665554
No 496
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.88 E-value=3.1e+02 Score=22.39 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=35.2
Q ss_pred HHhCCCCCCHhHHHHHHHHhcC-CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh
Q 045105 323 MLSLDLTPDIYTVGIILSACSS-LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSL 383 (601)
Q Consensus 323 ~~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 383 (601)
+.+.|++++..=.. ++..+.. .+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 8 l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455555544332 3333333 345677888888888877666666655566666665543
No 497
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.45 E-value=4.8e+02 Score=24.43 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHhcCCHHHHHH
Q 045105 159 NEVSCNTIIVGYCENGNVAEARE 181 (601)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~ 181 (601)
|+..|..+..+|.-.|+.+.+.+
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHH
Confidence 56667777777777776655543
No 498
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.12 E-value=5.3e+02 Score=26.54 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC
Q 045105 172 ENGNVAEARELFDQMEHLGVQRG 194 (601)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~g~~~~ 194 (601)
..|+.++|+.+++++...|..|.
T Consensus 269 ~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 269 IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 35888888888888888876543
No 499
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.63 E-value=1.5e+02 Score=23.12 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (601)
.++..+...+.+-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45556666666777888888888777667766655556666665543
No 500
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.10 E-value=1.7e+02 Score=30.65 Aligned_cols=163 Identities=18% Similarity=0.225 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 045105 61 SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR 140 (601)
Q Consensus 61 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 140 (601)
.|..-+..+...++.. ...++.+..+-...+...-.-++..|.+.|-.+.+..+.+.+-..-. ...-|...+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 4555555444433322 44455554443334455566667777777777777777766654322 2234556666677
Q ss_pred hcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCee---ehHHHHHHHHhCCChhHHHH
Q 045105 141 RCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL-GVQRGII---SWNSMISGYVDNSLYDEAFS 216 (601)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~---~~~~li~~~~~~~~~~~a~~ 216 (601)
++|+...+..+-..+. ..++..|... ..++++.+... .+.+... .|..+-. ..+.+++.+|.+
T Consensus 450 ra~d~~~v~~i~~~ll-----------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~-~~~~~~~~~Aa~ 516 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLL-----------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYE-LYDEGDFREAAS 516 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHH-----------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHH-HHhhhhHHHHHH
Confidence 7777666655544433 2222222111 11111111111 0111111 1211111 134477777777
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHh
Q 045105 217 MFRDLLMRDGIEPTSFTFGSVLIAC 241 (601)
Q Consensus 217 ~~~~~~~~~~~~p~~~~~~~ll~~~ 241 (601)
.+-.+.. .+..|...-...+.++.
T Consensus 517 ~Lv~Ll~-~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 517 LLVSLLK-SPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp -------------------------
T ss_pred HHHHHHC-CCCCcHHHHHHHHHHHH
Confidence 7777776 67777776666665554
Done!