Query 045105
Match_columns 601
No_of_seqs 566 out of 2776
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 17:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.4E-40 2.2E-44 342.6 36.5 485 33-565 63-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.2E-40 1.1E-44 344.9 30.1 499 4-545 65-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 7.6E-29 2.6E-33 247.2 20.8 207 41-279 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-25 3.9E-30 221.2 41.5 377 30-549 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.9E-28 9.8E-33 243.1 22.8 210 214-446 9-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 7.4E-25 2.5E-29 215.4 36.6 356 169-564 8-369 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.9E-23 1.3E-27 211.3 34.3 450 59-565 6-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.6E-22 1.2E-26 204.2 34.8 449 24-540 7-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 4E-21 1.4E-25 197.6 36.7 434 62-536 28-498 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 6.5E-21 2.2E-25 191.3 32.3 217 338-559 149-405 (450)
11 3fp2_A TPR repeat-containing p 99.9 2E-20 6.9E-25 192.3 32.0 429 23-500 25-495 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 9.7E-20 3.3E-24 182.7 33.7 254 10-290 10-281 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 3.2E-17 1.1E-21 158.9 31.4 322 161-544 4-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.8E-17 9.4E-22 159.3 29.9 297 234-565 6-337 (359)
15 2ooe_A Cleavage stimulation fa 99.8 1.6E-15 5.5E-20 155.0 40.5 425 93-565 12-494 (530)
16 1xi4_A Clathrin heavy chain; a 99.8 1.4E-14 4.8E-19 153.3 47.4 409 58-548 984-1415(1630)
17 3hym_B Cell division cycle pro 99.8 6E-17 2.1E-21 154.9 27.6 288 193-551 20-322 (330)
18 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.9E-22 157.9 22.5 251 4-290 15-267 (449)
19 1b89_A Protein (clathrin heavy 99.8 1.9E-16 6.4E-21 150.3 26.6 218 34-290 14-231 (449)
20 2xm6_A Protein corresponding t 99.8 5.3E-15 1.8E-19 149.5 37.6 364 142-560 56-464 (490)
21 3hym_B Cell division cycle pro 99.8 1.7E-15 5.9E-20 144.8 32.2 264 21-290 20-294 (330)
22 1xi4_A Clathrin heavy chain; a 99.7 1.9E-13 6.6E-18 144.9 47.2 450 22-562 984-1457(1630)
23 1fch_A Peroxisomal targeting s 99.7 2.3E-16 8E-21 153.4 24.0 281 3-290 36-354 (368)
24 3mkr_A Coatomer subunit epsilo 99.7 6.6E-16 2.2E-20 143.8 25.3 246 268-557 36-288 (291)
25 2ooe_A Cleavage stimulation fa 99.7 2.2E-14 7.6E-19 146.5 38.2 403 22-494 12-489 (530)
26 1fch_A Peroxisomal targeting s 99.7 1.3E-16 4.4E-21 155.3 20.6 301 209-560 39-356 (368)
27 2xm6_A Protein corresponding t 99.7 7.9E-14 2.7E-18 140.9 38.9 353 159-566 38-435 (490)
28 3spa_A Mtrpol, DNA-directed RN 99.7 8.7E-18 3E-22 172.0 9.1 162 25-186 129-307 (1134)
29 4eqf_A PEX5-related protein; a 99.7 6.6E-16 2.3E-20 150.0 21.3 263 22-290 64-351 (365)
30 4g1t_A Interferon-induced prot 99.7 1.1E-14 3.6E-19 146.9 30.8 220 332-574 247-470 (472)
31 4eqf_A PEX5-related protein; a 99.7 1.5E-15 5.2E-20 147.5 20.5 232 331-565 64-312 (365)
32 3cv0_A Peroxisome targeting si 99.7 4.5E-15 1.6E-19 141.6 23.2 262 22-290 20-310 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-17 1.4E-21 167.1 7.5 120 160-280 127-250 (1134)
34 3mkr_A Coatomer subunit epsilo 99.7 7.3E-15 2.5E-19 136.7 21.7 220 334-565 36-266 (291)
35 3cv0_A Peroxisome targeting si 99.7 2.5E-15 8.6E-20 143.4 19.1 262 265-561 20-313 (327)
36 4g1t_A Interferon-induced prot 99.7 9E-14 3.1E-18 140.1 29.4 148 383-541 316-471 (472)
37 2pl2_A Hypothetical conserved 99.6 1.1E-14 3.7E-19 129.5 17.7 195 364-560 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 4E-14 1.4E-18 129.9 20.5 221 332-564 5-237 (258)
39 2ho1_A Type 4 fimbrial biogene 99.5 4.2E-13 1.4E-17 122.6 20.6 198 367-565 37-240 (252)
40 2vq2_A PILW, putative fimbrial 99.5 1.1E-12 3.7E-17 117.4 21.0 198 366-564 7-212 (225)
41 3u4t_A TPR repeat-containing p 99.5 3.9E-12 1.3E-16 117.6 25.1 235 23-261 3-251 (272)
42 2q7f_A YRRB protein; TPR, prot 99.5 2.8E-13 9.5E-18 123.0 16.1 196 367-564 23-223 (243)
43 1ouv_A Conserved hypothetical 99.5 4.1E-12 1.4E-16 117.5 23.9 224 331-565 5-253 (273)
44 3e4b_A ALGK; tetratricopeptide 99.5 4.1E-12 1.4E-16 126.3 25.3 257 4-277 15-294 (452)
45 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-12 5.4E-17 129.3 22.0 209 347-564 194-422 (452)
46 3u4t_A TPR repeat-containing p 99.5 8.4E-13 2.9E-17 122.1 18.8 246 268-547 5-268 (272)
47 3uq3_A Heat shock protein STI1 99.5 1E-12 3.6E-17 120.3 18.8 235 266-543 5-256 (258)
48 2h6f_A Protein farnesyltransfe 99.5 1.8E-12 6.3E-17 124.6 21.1 229 332-564 97-349 (382)
49 2q7f_A YRRB protein; TPR, prot 99.5 5.6E-13 1.9E-17 121.0 16.4 216 330-548 21-241 (243)
50 2pl2_A Hypothetical conserved 99.5 1.9E-12 6.5E-17 114.9 19.0 195 21-220 3-210 (217)
51 2ho1_A Type 4 fimbrial biogene 99.5 3.7E-12 1.3E-16 116.3 21.1 195 24-222 38-236 (252)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.8E-12 9.4E-17 118.8 20.5 219 331-557 42-269 (275)
53 3vtx_A MAMA; tetratricopeptide 99.5 3.3E-12 1.1E-16 110.2 19.1 167 397-565 4-172 (184)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.4E-13 2.9E-17 122.3 15.7 213 4-222 17-242 (275)
55 2vq2_A PILW, putative fimbrial 99.5 8.8E-12 3E-16 111.4 21.6 199 22-223 7-210 (225)
56 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4E-14 112.4 37.4 201 331-534 342-575 (679)
57 4abn_A Tetratricopeptide repea 99.4 1.3E-12 4.4E-17 130.7 15.3 208 348-559 84-317 (474)
58 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4E-14 112.4 35.6 452 76-566 49-573 (679)
59 2h6f_A Protein farnesyltransfe 99.4 4.9E-11 1.7E-15 114.7 24.1 246 23-277 97-364 (382)
60 1ouv_A Conserved hypothetical 99.4 1.6E-10 5.4E-15 106.8 25.6 223 22-261 5-252 (273)
61 4a1s_A PINS, partner of inscut 99.4 9.4E-12 3.2E-16 122.8 18.2 150 414-563 199-372 (411)
62 3sf4_A G-protein-signaling mod 99.4 2.9E-11 1E-15 118.9 21.7 218 334-551 89-364 (406)
63 3ro2_A PINS homolog, G-protein 99.4 2.1E-11 7.2E-16 116.4 19.4 151 414-564 159-333 (338)
64 3sf4_A G-protein-signaling mod 99.4 6.2E-12 2.1E-16 123.8 15.7 297 162-517 11-364 (406)
65 3vtx_A MAMA; tetratricopeptide 99.3 2E-11 7E-16 105.2 15.4 166 366-533 4-174 (184)
66 4a1s_A PINS, partner of inscut 99.3 1.7E-11 5.7E-16 121.0 16.1 266 25-292 50-369 (411)
67 3as5_A MAMA; tetratricopeptide 99.3 2.9E-11 9.8E-16 104.3 15.5 163 401-565 11-175 (186)
68 3ulq_A Response regulator aspa 99.3 7.5E-11 2.6E-15 115.0 19.9 225 338-563 109-368 (383)
69 4gyw_A UDP-N-acetylglucosamine 99.3 2.7E-11 9.1E-16 126.1 17.1 162 398-562 9-173 (723)
70 3nf1_A KLC 1, kinesin light ch 99.3 4.7E-12 1.6E-16 119.6 10.2 233 331-563 26-307 (311)
71 3ro2_A PINS homolog, G-protein 99.3 3.7E-11 1.3E-15 114.7 16.0 264 26-291 8-328 (338)
72 3ulq_A Response regulator aspa 99.3 7.2E-10 2.4E-14 108.0 25.1 156 135-290 109-288 (383)
73 2ond_A Cleavage stimulation fa 99.3 5.7E-10 2E-14 104.9 21.1 211 9-223 33-269 (308)
74 3nf1_A KLC 1, kinesin light ch 99.2 5.2E-11 1.8E-15 112.3 12.7 251 234-532 30-310 (311)
75 3as5_A MAMA; tetratricopeptide 99.2 5E-10 1.7E-14 96.4 17.7 168 367-536 8-180 (186)
76 2ond_A Cleavage stimulation fa 99.2 1.9E-09 6.5E-14 101.3 23.1 216 40-261 33-271 (308)
77 4abn_A Tetratricopeptide repea 99.2 8.4E-11 2.9E-15 117.6 14.2 212 38-257 83-318 (474)
78 4i17_A Hypothetical protein; T 99.2 3.2E-10 1.1E-14 101.5 16.2 189 367-565 7-211 (228)
79 4i17_A Hypothetical protein; T 99.2 7E-10 2.4E-14 99.2 17.8 205 330-544 5-224 (228)
80 3q15_A PSP28, response regulat 99.2 1.4E-09 4.7E-14 105.7 21.0 224 338-562 107-364 (378)
81 1hz4_A MALT regulatory protein 99.2 2.8E-08 9.5E-13 96.3 28.3 84 478-561 225-320 (373)
82 1hz4_A MALT regulatory protein 99.1 4E-08 1.4E-12 95.2 26.1 263 168-457 22-317 (373)
83 3q15_A PSP28, response regulat 99.1 2.8E-08 9.7E-13 96.4 24.9 122 169-290 110-246 (378)
84 3edt_B KLC 2, kinesin light ch 99.1 9.6E-10 3.3E-14 101.9 13.2 221 343-563 12-281 (283)
85 2fo7_A Synthetic consensus TPR 99.0 5.1E-09 1.8E-13 84.5 14.4 127 437-564 5-133 (136)
86 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.9E-08 6.5E-13 89.5 18.5 179 369-566 6-216 (225)
87 4gyw_A UDP-N-acetylglucosamine 99.0 6.6E-09 2.3E-13 108.2 17.3 162 23-188 9-173 (723)
88 1qqe_A Vesicular transport pro 99.0 2.4E-09 8.3E-14 99.7 12.8 188 374-561 44-267 (292)
89 4ga2_A E3 SUMO-protein ligase 99.0 5.5E-10 1.9E-14 92.2 7.3 141 406-549 5-149 (150)
90 3mv2_B Coatomer subunit epsilo 99.0 2.4E-08 8.3E-13 90.8 18.1 175 386-564 85-283 (310)
91 3edt_B KLC 2, kinesin light ch 99.0 3.2E-09 1.1E-13 98.3 12.7 153 3-155 12-195 (283)
92 3qky_A Outer membrane assembly 99.0 1.1E-08 3.7E-13 93.6 15.6 182 367-565 15-226 (261)
93 1qqe_A Vesicular transport pro 99.0 1.5E-08 5.2E-13 94.2 16.8 202 334-537 39-277 (292)
94 2pzi_A Probable serine/threoni 99.0 2.4E-09 8.1E-14 112.1 12.3 169 378-549 402-583 (681)
95 3qky_A Outer membrane assembly 99.0 1.2E-08 4.3E-13 93.2 15.2 204 330-553 13-251 (261)
96 3qou_A Protein YBBN; thioredox 98.9 9.7E-09 3.3E-13 95.2 13.9 174 386-562 105-283 (287)
97 2fo7_A Synthetic consensus TPR 98.9 3.4E-08 1.2E-12 79.5 15.4 131 400-532 3-135 (136)
98 2r5s_A Uncharacterized protein 98.9 6.6E-09 2.3E-13 88.5 11.0 156 404-562 12-172 (176)
99 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-07 3.6E-12 83.6 18.3 163 395-565 15-199 (212)
100 2vsy_A XCC0866; transferase, g 98.9 1.9E-08 6.5E-13 103.5 15.0 160 380-541 2-169 (568)
101 3gyz_A Chaperone protein IPGC; 98.9 6E-09 2.1E-13 85.4 9.0 98 468-565 36-135 (151)
102 3urz_A Uncharacterized protein 98.8 5E-08 1.7E-12 85.6 13.8 128 402-532 58-189 (208)
103 4ga2_A E3 SUMO-protein ligase 98.8 5.2E-08 1.8E-12 80.2 12.6 139 2-144 7-149 (150)
104 3mv2_B Coatomer subunit epsilo 98.8 1.3E-07 4.5E-12 86.1 16.0 181 351-538 85-291 (310)
105 2uy1_A Cleavage stimulation fa 98.8 2E-06 6.8E-11 85.8 26.1 200 8-223 11-241 (493)
106 3urz_A Uncharacterized protein 98.8 4.4E-08 1.5E-12 85.9 12.3 159 403-565 9-188 (208)
107 2pzi_A Probable serine/threoni 98.8 6.3E-08 2.2E-12 101.3 14.8 167 4-175 403-583 (681)
108 4gco_A Protein STI-1; structur 98.8 5.3E-08 1.8E-12 77.3 10.8 105 436-541 16-122 (126)
109 4gco_A Protein STI-1; structur 98.8 4E-08 1.4E-12 78.0 10.1 97 469-565 14-112 (126)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.4E-07 4.7E-12 83.1 14.7 129 400-533 8-154 (213)
111 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4.2E-12 88.8 15.0 185 369-556 38-254 (307)
112 2vsy_A XCC0866; transferase, g 98.8 1.1E-07 3.8E-12 97.7 15.5 146 346-494 3-154 (568)
113 2vgx_A Chaperone SYCD; alterna 98.7 2.4E-08 8.3E-13 81.9 7.6 98 468-565 21-120 (148)
114 2c2l_A CHIP, carboxy terminus 98.7 4.4E-08 1.5E-12 90.4 10.3 192 367-563 4-199 (281)
115 3u3w_A Transcriptional activat 98.7 7.8E-07 2.7E-11 82.7 18.9 159 403-561 80-264 (293)
116 3qou_A Protein YBBN; thioredox 98.7 3.1E-07 1E-11 85.0 15.9 140 12-156 106-246 (287)
117 2r5s_A Uncharacterized protein 98.7 3.4E-07 1.2E-11 77.7 13.9 156 25-185 8-169 (176)
118 3dra_A Protein farnesyltransfe 98.7 4.1E-06 1.4E-10 77.1 21.4 215 345-562 46-286 (306)
119 2qfc_A PLCR protein; TPR, HTH, 98.7 6.8E-07 2.3E-11 83.1 16.5 162 400-561 77-264 (293)
120 2uy1_A Cleavage stimulation fa 98.7 1.5E-05 5.3E-10 79.4 27.0 201 348-562 195-412 (493)
121 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.2E-07 2.1E-11 79.6 15.2 185 331-535 3-219 (225)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 8.8E-07 3E-11 77.8 15.9 129 371-500 10-154 (213)
123 2xcb_A PCRH, regulatory protei 98.6 1.3E-07 4.4E-12 77.1 9.3 95 470-564 20-116 (142)
124 1p5q_A FKBP52, FK506-binding p 98.6 2.3E-07 7.8E-12 88.0 12.4 94 468-561 196-292 (336)
125 1a17_A Serine/threonine protei 98.6 6.1E-07 2.1E-11 75.1 13.6 127 435-562 15-145 (166)
126 2kck_A TPR repeat; tetratricop 98.6 2.7E-07 9.2E-12 71.3 10.6 101 467-567 5-110 (112)
127 2e2e_A Formate-dependent nitri 98.6 1.8E-07 6.2E-12 79.5 10.2 122 410-533 22-148 (177)
128 1na0_A Designed protein CTPR3; 98.6 6.6E-07 2.3E-11 70.6 12.7 114 434-548 10-125 (125)
129 1hxi_A PEX5, peroxisome target 98.6 1.3E-07 4.3E-12 74.5 7.9 96 470-565 19-116 (121)
130 2lni_A Stress-induced-phosphop 98.6 6.7E-07 2.3E-11 71.6 12.5 115 434-549 17-133 (133)
131 3gyz_A Chaperone protein IPGC; 98.6 6.5E-07 2.2E-11 73.2 12.4 105 429-534 31-138 (151)
132 3upv_A Heat shock protein STI1 98.6 2.2E-07 7.5E-12 73.8 9.3 96 469-564 5-102 (126)
133 4f3v_A ESX-1 secretion system 98.6 5.8E-07 2E-11 80.7 12.6 184 379-566 18-240 (282)
134 2vyi_A SGTA protein; chaperone 98.6 5.2E-07 1.8E-11 71.9 11.4 117 433-550 12-130 (131)
135 2ifu_A Gamma-SNAP; membrane fu 98.5 4.7E-07 1.6E-11 84.8 11.2 195 345-561 4-222 (307)
136 3rjv_A Putative SEL1 repeat pr 98.5 2.7E-06 9.2E-11 74.6 15.3 175 350-531 4-199 (212)
137 3sz7_A HSC70 cochaperone (SGT) 98.5 4E-07 1.4E-11 76.2 9.1 110 432-542 10-121 (164)
138 2vgx_A Chaperone SYCD; alterna 98.5 4.7E-07 1.6E-11 74.1 9.1 114 421-537 10-126 (148)
139 2fbn_A 70 kDa peptidylprolyl i 98.5 1.4E-07 4.8E-12 81.9 6.1 170 376-565 13-188 (198)
140 2lni_A Stress-induced-phosphop 98.5 1E-06 3.6E-11 70.4 10.7 100 466-565 14-115 (133)
141 4gcn_A Protein STI-1; structur 98.5 4.4E-07 1.5E-11 72.1 8.1 94 470-563 10-112 (127)
142 3dra_A Protein farnesyltransfe 98.5 6.2E-05 2.1E-09 69.2 23.5 222 33-259 43-286 (306)
143 3q49_B STIP1 homology and U bo 98.5 1.3E-06 4.5E-11 70.4 11.1 98 467-564 8-107 (137)
144 2e2e_A Formate-dependent nitri 98.4 1.7E-06 5.8E-11 73.4 11.7 124 443-567 20-148 (177)
145 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-06 5.2E-11 67.7 10.5 95 470-564 6-102 (118)
146 2dba_A Smooth muscle cell asso 98.4 2E-06 6.9E-11 70.3 11.7 97 468-564 28-129 (148)
147 2xcb_A PCRH, regulatory protei 98.4 8.4E-07 2.9E-11 72.1 8.6 111 430-541 14-127 (142)
148 3u3w_A Transcriptional activat 98.4 7.2E-06 2.5E-10 76.1 16.0 160 64-223 80-265 (293)
149 3gw4_A Uncharacterized protein 98.4 1.9E-06 6.5E-11 74.9 11.2 77 380-456 5-89 (203)
150 3gw4_A Uncharacterized protein 98.4 1.7E-06 5.9E-11 75.2 10.5 120 3-122 3-135 (203)
151 2xev_A YBGF; tetratricopeptide 98.4 1.5E-06 5.2E-11 69.2 9.3 91 474-564 8-106 (129)
152 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.7E-11 81.0 9.5 99 23-124 4-102 (281)
153 2qfc_A PLCR protein; TPR, HTH, 98.4 1E-05 3.5E-10 75.0 16.3 162 368-529 76-266 (293)
154 1na0_A Designed protein CTPR3; 98.4 9.9E-06 3.4E-10 63.6 13.8 114 23-140 9-122 (125)
155 3upv_A Heat shock protein STI1 98.4 2.9E-06 9.9E-11 67.2 10.3 110 435-545 6-123 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.3 7E-06 2.4E-10 63.8 12.2 110 434-544 5-116 (118)
157 4f3v_A ESX-1 secretion system 98.3 1.9E-06 6.5E-11 77.4 9.8 192 344-540 18-247 (282)
158 3sz7_A HSC70 cochaperone (SGT) 98.3 4.3E-06 1.5E-10 69.8 11.5 96 469-564 12-109 (164)
159 1a17_A Serine/threonine protei 98.3 1.1E-05 3.9E-10 67.2 13.9 127 24-154 14-142 (166)
160 2vyi_A SGTA protein; chaperone 98.3 9.9E-06 3.4E-10 64.3 12.5 119 23-145 12-130 (131)
161 3k9i_A BH0479 protein; putativ 98.3 7.2E-07 2.5E-11 69.7 5.4 84 481-564 3-91 (117)
162 2hr2_A Hypothetical protein; a 98.3 2.7E-06 9.2E-11 68.7 8.4 63 501-563 58-131 (159)
163 1p5q_A FKBP52, FK506-binding p 98.3 1.6E-06 5.6E-11 82.1 8.3 138 7-148 128-283 (336)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 4.9E-06 1.7E-10 82.5 11.9 96 468-563 317-415 (457)
165 3rkv_A Putative peptidylprolyl 98.2 2.4E-06 8.2E-11 71.2 7.7 64 501-564 64-127 (162)
166 3q49_B STIP1 homology and U bo 98.2 7.4E-06 2.5E-10 65.9 10.2 100 432-532 8-109 (137)
167 3q7a_A Farnesyltransferase alp 98.2 0.00013 4.6E-09 67.8 19.5 218 343-563 65-331 (349)
168 1elr_A TPR2A-domain of HOP; HO 98.2 4.5E-06 1.5E-10 66.3 8.1 109 434-544 5-122 (131)
169 2fbn_A 70 kDa peptidylprolyl i 98.2 4.9E-06 1.7E-10 72.0 8.7 143 5-149 17-176 (198)
170 1wao_1 Serine/threonine protei 98.2 3.8E-06 1.3E-10 83.6 8.8 119 440-559 13-135 (477)
171 2dba_A Smooth muscle cell asso 98.2 2.3E-05 8E-10 63.8 12.1 108 435-544 30-143 (148)
172 1ihg_A Cyclophilin 40; ppiase 98.1 1.1E-05 3.7E-10 77.3 11.1 89 468-556 273-363 (370)
173 3ro3_A PINS homolog, G-protein 98.1 6.6E-06 2.3E-10 68.2 8.4 93 470-562 51-157 (164)
174 2kck_A TPR repeat; tetratricop 98.1 3.7E-05 1.3E-09 58.9 12.1 100 22-124 5-107 (112)
175 3dss_A Geranylgeranyl transfer 98.1 0.00019 6.6E-09 66.4 18.6 218 345-565 42-306 (331)
176 3q7a_A Farnesyltransferase alp 98.1 0.00057 2E-08 63.6 21.5 180 26-210 57-257 (349)
177 3k9i_A BH0479 protein; putativ 98.1 2.3E-06 8E-11 66.7 4.6 93 446-538 3-99 (117)
178 2xev_A YBGF; tetratricopeptide 98.1 4.3E-05 1.5E-09 60.5 12.1 104 439-543 8-119 (129)
179 1hxi_A PEX5, peroxisome target 98.1 1.1E-05 3.9E-10 63.1 8.4 98 436-534 20-119 (121)
180 2if4_A ATFKBP42; FKBP-like, al 98.1 5.2E-06 1.8E-10 78.6 7.4 151 398-567 179-332 (338)
181 1elr_A TPR2A-domain of HOP; HO 98.1 1.3E-05 4.4E-10 63.6 8.6 93 471-563 7-108 (131)
182 4gcn_A Protein STI-1; structur 98.0 5.1E-05 1.7E-09 59.9 11.0 105 25-133 10-120 (127)
183 3bee_A Putative YFRE protein; 98.0 3.5E-05 1.2E-09 56.5 9.2 72 498-570 4-78 (93)
184 2kat_A Uncharacterized protein 98.0 2E-05 6.9E-10 61.0 8.4 78 486-563 3-82 (115)
185 4b4t_Q 26S proteasome regulato 98.0 4.8E-05 1.6E-09 75.0 13.2 163 400-562 57-244 (434)
186 3rkv_A Putative peptidylprolyl 98.0 1.3E-05 4.4E-10 66.7 7.6 78 468-545 63-143 (162)
187 3ma5_A Tetratricopeptide repea 98.0 3.1E-05 1E-09 58.2 8.7 65 499-563 6-70 (100)
188 4b4t_Q 26S proteasome regulato 97.9 0.00011 3.9E-09 72.3 14.3 193 30-222 11-243 (434)
189 2l6j_A TPR repeat-containing p 97.9 3.1E-06 1.1E-10 65.1 2.3 92 468-559 4-103 (111)
190 2hr2_A Hypothetical protein; a 97.9 2.5E-05 8.7E-10 63.0 7.6 74 470-543 59-145 (159)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 3.8E-05 1.3E-09 72.6 9.7 150 367-534 179-333 (338)
192 1wao_1 Serine/threonine protei 97.9 5.2E-05 1.8E-09 75.4 11.0 118 373-492 12-134 (477)
193 1dce_A Protein (RAB geranylger 97.9 0.00035 1.2E-08 70.8 16.9 169 382-552 44-244 (567)
194 1na3_A Designed protein CTPR2; 97.8 5.7E-05 1.9E-09 55.3 7.7 80 469-548 10-91 (91)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 2.1E-05 7.2E-10 77.9 6.8 139 7-149 249-405 (457)
196 1ihg_A Cyclophilin 40; ppiase 97.8 4.7E-05 1.6E-09 72.8 8.6 66 499-564 272-337 (370)
197 3ro3_A PINS homolog, G-protein 97.8 0.00011 3.7E-09 60.7 9.9 131 400-530 11-159 (164)
198 3dss_A Geranylgeranyl transfer 97.8 0.012 4.1E-07 54.4 23.7 217 35-260 41-304 (331)
199 3n71_A Histone lysine methyltr 97.8 8.2E-05 2.8E-09 73.5 9.8 123 442-564 318-465 (490)
200 1zu2_A Mitochondrial import re 97.7 1.9E-05 6.5E-10 63.6 4.0 86 480-565 14-122 (158)
201 2l6j_A TPR repeat-containing p 97.7 0.00011 3.7E-09 56.2 8.2 67 499-565 3-69 (111)
202 1klx_A Cysteine rich protein B 97.6 0.00046 1.6E-08 55.2 10.9 112 447-565 9-128 (138)
203 3lvg_A Clathrin heavy chain 1; 97.6 1.7E-05 5.9E-10 74.8 1.7 242 22-287 53-325 (624)
204 1na3_A Designed protein CTPR2; 97.6 0.00025 8.5E-09 51.7 7.7 66 499-564 8-73 (91)
205 1dce_A Protein (RAB geranylger 97.4 0.0022 7.4E-08 65.0 14.9 153 409-564 39-222 (567)
206 2kc7_A BFR218_protein; tetratr 97.3 0.00063 2.1E-08 50.6 7.0 79 474-560 6-87 (99)
207 1zu2_A Mitochondrial import re 97.3 0.00032 1.1E-08 56.5 5.2 51 484-534 62-125 (158)
208 1klx_A Cysteine rich protein B 97.2 0.0044 1.5E-07 49.4 11.0 111 412-530 9-127 (138)
209 2kat_A Uncharacterized protein 97.2 0.0021 7.1E-08 49.3 8.8 61 24-86 20-80 (115)
210 2kc7_A BFR218_protein; tetratr 97.2 0.00053 1.8E-08 51.0 5.2 59 507-565 7-66 (99)
211 3n71_A Histone lysine methyltr 97.1 0.0015 5.1E-08 64.5 9.5 131 69-223 319-463 (490)
212 3qww_A SET and MYND domain-con 97.1 0.00072 2.5E-08 65.6 6.7 103 480-600 310-430 (433)
213 3u64_A Protein TP_0956; tetrat 97.0 0.0023 8E-08 56.8 8.2 88 484-571 179-277 (301)
214 3ma5_A Tetratricopeptide repea 96.9 0.0025 8.5E-08 47.4 7.3 64 22-87 6-69 (100)
215 3qwp_A SET and MYND domain-con 96.9 0.0014 4.6E-08 63.8 7.2 88 476-563 295-400 (429)
216 1wy6_A Hypothetical protein ST 96.9 0.087 3E-06 40.2 15.7 147 402-566 9-157 (172)
217 3ly7_A Transcriptional activat 96.8 0.034 1.2E-06 51.7 15.1 47 395-443 191-243 (372)
218 3ly7_A Transcriptional activat 96.7 0.014 4.8E-07 54.3 11.5 134 429-565 190-341 (372)
219 3lvg_A Clathrin heavy chain 1; 96.6 7.9E-05 2.7E-09 70.4 -4.3 204 58-279 53-276 (624)
220 3qww_A SET and MYND domain-con 96.5 0.013 4.4E-07 56.8 10.3 93 445-537 310-424 (433)
221 3qwp_A SET and MYND domain-con 96.4 0.019 6.4E-07 55.8 11.1 99 440-538 294-414 (429)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.25 8.7E-06 52.7 20.6 131 336-495 633-763 (814)
223 3bee_A Putative YFRE protein; 96.2 0.026 9E-07 41.0 8.4 68 465-532 3-75 (93)
224 2v5f_A Prolyl 4-hydroxylase su 96.2 0.025 8.4E-07 42.3 8.4 71 471-541 8-87 (104)
225 1pc2_A Mitochondria fission pr 96.2 0.011 3.9E-07 46.9 6.6 92 446-538 11-109 (152)
226 1pc2_A Mitochondria fission pr 96.2 0.02 6.8E-07 45.5 7.8 67 498-564 30-101 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.024 8.2E-07 42.3 7.8 67 499-565 4-77 (104)
228 3mkq_A Coatomer beta'-subunit; 96.0 0.063 2.2E-06 57.5 13.7 26 469-494 682-707 (814)
229 3mkq_B Coatomer subunit alpha; 95.7 0.29 1E-05 39.9 13.0 45 378-424 16-60 (177)
230 1nzn_A CGI-135 protein, fissio 95.3 0.2 6.9E-06 38.2 10.0 93 446-539 14-113 (126)
231 3mkq_B Coatomer subunit alpha; 95.2 1 3.5E-05 36.7 15.7 105 30-156 12-116 (177)
232 4h7y_A Dual specificity protei 95.2 0.068 2.3E-06 41.8 7.3 27 432-458 12-44 (161)
233 4gns_B Protein CSD3, chitin bi 94.5 0.13 4.4E-06 53.1 9.4 54 507-560 344-397 (754)
234 4h7y_A Dual specificity protei 94.4 0.43 1.5E-05 37.4 9.8 106 20-128 10-128 (161)
235 1qsa_A Protein (soluble lytic 94.2 5.3 0.00018 40.5 26.9 114 412-528 228-347 (618)
236 1wy6_A Hypothetical protein ST 93.7 1.8 6.1E-05 33.2 12.8 117 344-464 19-156 (172)
237 1nzn_A CGI-135 protein, fissio 93.3 0.14 4.9E-06 39.0 5.4 69 497-565 32-105 (126)
238 3u64_A Protein TP_0956; tetrat 93.2 0.75 2.6E-05 41.0 10.5 94 39-134 179-282 (301)
239 2ff4_A Probable regulatory pro 92.5 0.28 9.7E-06 46.8 7.6 67 504-570 175-246 (388)
240 2wpv_A GET4, UPF0363 protein Y 92.4 6.2 0.00021 35.8 17.8 168 369-563 35-217 (312)
241 1v54_E Cytochrome C oxidase po 92.1 1.2 4E-05 32.1 8.2 67 308-375 21-87 (109)
242 1y8m_A FIS1; mitochondria, unk 92.0 1.2 4.2E-05 34.6 9.0 73 464-536 35-113 (144)
243 2ff4_A Probable regulatory pro 91.6 1.8 6.2E-05 41.2 12.0 67 29-97 177-248 (388)
244 3o48_A Mitochondria fission 1 91.5 0.54 1.9E-05 36.0 6.5 75 463-537 35-115 (134)
245 4b4t_P 26S proteasome regulato 91.4 3.8 0.00013 39.7 14.2 250 37-290 30-319 (445)
246 4gns_B Protein CSD3, chitin bi 90.5 3.2 0.00011 42.9 13.2 125 29-156 254-398 (754)
247 3lpz_A GET4 (YOR164C homolog); 90.4 10 0.00036 34.6 21.1 167 369-562 37-215 (336)
248 1v54_E Cytochrome C oxidase po 89.5 2.1 7.1E-05 30.8 7.5 49 494-542 39-87 (109)
249 4fhn_B Nucleoporin NUP120; pro 89.3 12 0.00042 41.4 17.8 49 400-450 940-988 (1139)
250 2y69_E Cytochrome C oxidase su 88.8 2.8 9.6E-05 32.0 8.2 67 308-375 64-130 (152)
251 4ady_A RPN2, 26S proteasome re 88.7 28 0.00094 37.1 33.3 257 138-435 383-663 (963)
252 1y8m_A FIS1; mitochondria, unk 88.6 5.4 0.00018 31.0 10.0 68 497-564 36-107 (144)
253 3o48_A Mitochondria fission 1 88.6 3 0.0001 31.9 8.5 68 497-564 37-108 (134)
254 4fhn_B Nucleoporin NUP120; pro 87.5 15 0.00053 40.6 17.0 146 26-178 815-989 (1139)
255 3ffl_A Anaphase-promoting comp 87.3 3.5 0.00012 33.0 8.5 123 426-560 11-148 (167)
256 3ffl_A Anaphase-promoting comp 86.4 3.1 0.0001 33.4 7.7 113 372-497 25-151 (167)
257 1zbp_A Hypothetical protein VP 86.0 0.96 3.3E-05 39.6 5.1 56 477-532 6-63 (273)
258 3lpz_A GET4 (YOR164C homolog); 84.8 23 0.0008 32.3 21.0 133 25-173 37-180 (336)
259 2uwj_G Type III export protein 83.7 9.9 0.00034 27.2 9.8 89 345-438 19-107 (115)
260 2wpv_A GET4, UPF0363 protein Y 83.4 26 0.00088 31.7 20.5 132 25-172 35-177 (312)
261 2p58_C Putative type III secre 82.9 11 0.00037 27.0 10.2 88 345-437 20-107 (116)
262 2y69_E Cytochrome C oxidase su 82.7 6.4 0.00022 30.1 7.5 52 491-542 79-130 (152)
263 2p58_C Putative type III secre 82.3 12 0.00039 26.9 8.3 85 109-198 22-106 (116)
264 2uwj_G Type III export protein 82.2 11 0.00037 27.0 7.9 85 109-198 21-105 (115)
265 3eiq_C Programmed cell death p 81.6 33 0.0011 31.7 14.5 61 371-431 221-286 (358)
266 1wdy_A 2-5A-dependent ribonucl 80.2 30 0.001 30.4 13.5 46 244-289 192-239 (285)
267 4b4t_P 26S proteasome regulato 77.8 52 0.0018 31.7 24.7 50 73-122 30-84 (445)
268 1wdy_A 2-5A-dependent ribonucl 77.6 36 0.0012 29.9 13.4 15 5-19 15-29 (285)
269 1zbp_A Hypothetical protein VP 77.6 4.6 0.00016 35.4 6.1 56 31-88 5-60 (273)
270 3esl_A Checkpoint serine/threo 74.9 24 0.0008 29.4 9.4 53 75-127 95-148 (202)
271 3ltm_A Alpha-REP4; protein eng 73.1 40 0.0014 28.2 19.9 48 128-175 94-141 (211)
272 2qx5_A Nucleoporin NIC96; mRNA 70.7 97 0.0033 31.6 23.4 44 163-207 155-198 (661)
273 2nsz_A Programmed cell death p 69.8 31 0.0011 26.3 8.6 68 26-95 10-79 (129)
274 3esl_A Checkpoint serine/threo 69.6 40 0.0014 28.1 9.6 30 500-529 115-144 (202)
275 4a1g_A Mitotic checkpoint seri 68.2 39 0.0013 26.6 8.9 55 76-130 82-137 (152)
276 1wgl_A TOLL-interacting protei 66.4 7.5 0.00026 24.8 3.7 56 514-570 4-59 (59)
277 3ltm_A Alpha-REP4; protein eng 66.3 56 0.0019 27.2 19.7 154 365-528 31-184 (211)
278 4b4t_R RPN7, 26S proteasome re 66.2 14 0.00046 35.7 7.4 60 435-494 133-194 (429)
279 3ltj_A Alpharep-4; protein eng 65.6 56 0.0019 26.9 20.5 149 13-174 18-166 (201)
280 2ion_A PDCD4, programmed cell 64.5 25 0.00085 27.8 7.3 69 26-96 12-82 (152)
281 4b4t_R RPN7, 26S proteasome re 63.2 60 0.002 31.1 11.3 97 163-259 134-236 (429)
282 3kea_A K1L; tropism, ANK repea 62.5 83 0.0028 27.8 13.3 209 4-233 8-225 (285)
283 3txn_A 26S proteasome regulato 62.4 1E+02 0.0036 28.9 19.5 34 530-565 312-345 (394)
284 2d2s_A Exocyst complex compone 61.2 39 0.0013 29.1 8.5 86 66-154 25-116 (235)
285 2wvi_A Mitotic checkpoint seri 59.2 42 0.0014 26.9 7.7 55 76-130 77-132 (164)
286 3eu9_A Huntingtin-interacting 59.2 35 0.0012 29.0 8.3 17 32-48 15-31 (240)
287 1ug3_A EIF4GI, eukaryotic prot 58.3 1.1E+02 0.0037 28.1 11.6 95 26-122 14-113 (339)
288 3eu9_A Huntingtin-interacting 57.8 57 0.0019 27.6 9.5 180 373-564 45-237 (240)
289 4a1g_A Mitotic checkpoint seri 57.6 68 0.0023 25.3 9.0 49 519-567 84-134 (152)
290 4b4t_S RPN3, 26S proteasome re 57.5 83 0.0028 30.8 10.8 64 25-88 233-299 (523)
291 3txn_A 26S proteasome regulato 56.1 1.3E+02 0.0046 28.2 27.9 65 270-360 103-167 (394)
292 2wvi_A Mitotic checkpoint seri 51.0 94 0.0032 24.9 8.9 29 501-529 97-125 (164)
293 2zu6_B Programmed cell death p 50.3 1.4E+02 0.0049 26.8 15.1 62 371-432 170-236 (307)
294 3kea_A K1L; tropism, ANK repea 50.1 84 0.0029 27.8 9.5 15 377-391 69-83 (285)
295 4aez_C MAD3, mitotic spindle c 49.4 59 0.002 27.5 7.4 54 76-129 131-185 (223)
296 1k1a_A B-cell lymphoma 3-encod 47.9 1.2E+02 0.0043 25.4 11.9 17 139-155 86-102 (241)
297 1qsa_A Protein (soluble lytic 46.6 2.4E+02 0.0084 28.4 34.9 367 132-553 75-469 (618)
298 3hra_A Ankyrin repeat family p 46.3 87 0.003 25.5 8.5 16 33-48 12-27 (201)
299 1ug3_A EIF4GI, eukaryotic prot 44.0 1.9E+02 0.0065 26.5 12.2 11 502-512 274-284 (339)
300 1k1a_A B-cell lymphoma 3-encod 43.5 1.4E+02 0.0049 25.1 9.7 110 167-286 83-200 (241)
301 3mv2_A Coatomer subunit alpha; 41.8 1.5E+02 0.005 26.9 9.1 126 408-564 124-257 (325)
302 3eiq_C Programmed cell death p 40.8 1.2E+02 0.0042 28.0 8.8 69 26-96 220-290 (358)
303 3bqo_A Telomeric repeat-bindin 40.2 1E+02 0.0036 25.4 7.1 37 507-543 124-160 (211)
304 2fu4_A Ferric uptake regulatio 39.4 87 0.003 21.2 7.8 61 83-144 6-67 (83)
305 2fe3_A Peroxide operon regulat 39.3 1.3E+02 0.0045 23.3 8.4 61 83-144 11-71 (145)
306 3aji_A 26S proteasome non-ATPa 38.7 1.7E+02 0.0058 24.4 9.3 20 29-48 9-28 (231)
307 2r9g_A AAA ATPase, central reg 38.3 1.7E+02 0.0058 24.2 9.4 55 410-465 26-85 (204)
308 3hra_A Ankyrin repeat family p 37.2 1.6E+02 0.0056 23.7 9.5 17 138-154 78-94 (201)
309 3ltj_A Alpharep-4; protein eng 37.1 1.7E+02 0.0058 23.8 21.1 153 366-528 27-179 (201)
310 2xig_A Ferric uptake regulatio 36.6 1.5E+02 0.0052 23.1 8.4 62 82-144 15-76 (150)
311 2ijq_A Hypothetical protein; s 36.0 1.5E+02 0.005 23.6 7.3 50 37-87 46-103 (161)
312 1mzb_A Ferric uptake regulatio 36.0 1.4E+02 0.0049 22.7 7.7 60 84-144 8-68 (136)
313 3jxi_A Vanilloid receptor-rela 36.0 1.3E+02 0.0044 25.8 8.3 28 66-93 9-36 (260)
314 3bge_A Predicted ATPase; struc 35.9 1.9E+02 0.0063 23.9 8.0 61 404-464 10-78 (201)
315 4b4t_S RPN3, 26S proteasome re 35.5 1.1E+02 0.0038 29.9 7.8 58 434-494 232-296 (523)
316 3jxi_A Vanilloid receptor-rela 35.2 69 0.0024 27.7 6.3 55 30-85 9-72 (260)
317 2w57_A Ferric uptake regulatio 35.2 1.6E+02 0.0054 23.0 7.9 62 83-145 6-68 (150)
318 2zu6_B Programmed cell death p 35.1 1.3E+02 0.0046 27.0 8.0 69 26-96 169-239 (307)
319 3eyy_A Putative iron uptake re 34.3 1.4E+02 0.0049 23.1 7.2 60 83-144 8-67 (145)
320 2ion_A PDCD4, programmed cell 33.9 1.4E+02 0.0048 23.5 7.0 59 132-190 12-75 (152)
321 3ygs_P Procaspase 9; apoptosis 33.6 38 0.0013 24.2 3.4 38 37-79 51-88 (97)
322 3bu8_A Telomeric repeat-bindin 33.3 1.5E+02 0.005 24.9 7.0 49 39-88 88-143 (235)
323 3ljn_A Hypothetical protein; a 32.3 2.9E+02 0.01 25.1 11.9 211 28-256 22-266 (364)
324 1bd8_A P19INK4D CDK4/6 inhibit 32.3 1.7E+02 0.0058 22.4 8.0 114 29-154 5-123 (156)
325 1ya0_A SMG-7 transcript varian 32.0 1.7E+02 0.0057 28.7 8.7 58 506-563 158-215 (497)
326 4ets_A Ferric uptake regulatio 31.9 1.2E+02 0.0039 24.2 6.4 68 212-280 14-83 (162)
327 3ctd_A Putative ATPase, AAA fa 31.6 2.3E+02 0.0078 23.7 8.8 61 404-464 38-106 (213)
328 2nsz_A Programmed cell death p 31.5 1.7E+02 0.0058 22.2 8.4 58 133-190 11-73 (129)
329 1bpo_A Protein (clathrin); cla 29.2 3.9E+02 0.013 25.7 11.0 132 116-257 348-482 (494)
330 4gq2_M Nucleoporin NUP120; bet 28.5 3.7E+02 0.013 29.0 11.4 51 439-494 816-866 (950)
331 2b7e_A PRE-mRNA processing pro 28.4 61 0.0021 20.6 3.2 29 177-205 3-31 (59)
332 2qq8_A TBC1 domain family memb 27.6 1.8E+02 0.0062 26.5 7.8 42 115-156 214-255 (334)
333 4ady_A RPN2, 26S proteasome re 27.5 6E+02 0.02 27.2 38.5 26 197-222 232-257 (963)
334 2fe3_A Peroxide operon regulat 26.9 2E+02 0.0069 22.2 7.0 35 412-446 35-69 (145)
335 4ets_A Ferric uptake regulatio 26.9 2.4E+02 0.0081 22.4 8.6 69 76-145 14-85 (162)
336 1n11_A Ankyrin; clathrin, BAND 26.2 4.1E+02 0.014 24.9 15.1 164 29-212 17-193 (437)
337 2etb_A Transient receptor pote 25.0 1.1E+02 0.0039 26.2 5.8 28 66-93 6-33 (256)
338 2d2s_A Exocyst complex compone 24.7 3.3E+02 0.011 23.3 11.0 28 263-290 88-115 (235)
339 2fu4_A Ferric uptake regulatio 24.6 1.6E+02 0.0056 19.7 7.2 60 323-383 8-68 (83)
340 3aji_A 26S proteasome non-ATPa 24.3 3E+02 0.01 22.7 11.0 18 67-84 11-28 (231)
341 3ygs_P Procaspase 9; apoptosis 24.1 1.3E+02 0.0045 21.4 4.9 37 144-180 52-88 (97)
342 4aez_C MAD3, mitotic spindle c 24.0 3.3E+02 0.011 23.0 8.3 52 415-466 131-183 (223)
343 3b7b_A Euchromatic histone-lys 24.0 3.1E+02 0.011 22.8 8.5 207 29-260 14-236 (237)
344 2rfa_A Transient receptor pote 24.0 3.1E+02 0.011 22.7 10.9 19 30-48 7-25 (232)
345 2rg8_A Programmed cell death p 23.9 2.4E+02 0.0082 22.5 6.9 24 164-187 14-37 (165)
346 2f6m_A Suppressor protein STP2 23.9 1.2E+02 0.0041 19.7 4.0 46 400-446 4-49 (65)
347 3e3v_A Regulatory protein RECX 23.7 2.9E+02 0.0099 22.3 8.3 15 418-432 87-101 (177)
348 3bu8_A Telomeric repeat-bindin 23.7 2.6E+02 0.0088 23.5 6.9 18 477-494 123-140 (235)
349 2ijq_A Hypothetical protein; s 23.3 2.3E+02 0.0079 22.5 6.5 51 173-223 45-103 (161)
350 2qx5_A Nucleoporin NIC96; mRNA 23.2 6.1E+02 0.021 25.8 22.1 79 200-290 299-380 (661)
351 2pnn_A Transient receptor pote 22.9 3.6E+02 0.012 23.1 8.9 189 27-220 14-255 (273)
352 3t8k_A Uncharacterized protein 22.9 3E+02 0.01 22.2 7.9 94 30-128 10-108 (186)
353 4g8k_A 2-5A-dependent ribonucl 22.8 4.1E+02 0.014 23.7 17.7 40 251-290 219-260 (337)
354 2qq8_A TBC1 domain family memb 22.4 1.8E+02 0.0063 26.5 6.8 77 419-495 214-293 (334)
355 2o03_A Probable zinc uptake re 22.0 1.8E+02 0.0062 22.0 5.7 46 404-449 16-61 (131)
356 1wty_A Hypothetical protein TT 21.9 2.4E+02 0.0083 20.8 6.2 66 413-484 3-69 (119)
357 3qye_A TBC1 domain family memb 21.6 4.5E+02 0.015 23.7 10.4 106 80-185 209-319 (331)
358 2cfu_A SDSA1; SDS-hydrolase, l 21.5 1.8E+02 0.0062 29.7 7.1 62 484-548 436-497 (658)
359 2xig_A Ferric uptake regulatio 20.9 3E+02 0.01 21.4 7.2 40 408-447 36-75 (150)
360 2o03_A Probable zinc uptake re 20.9 2E+02 0.0068 21.7 5.7 44 100-143 16-59 (131)
361 2etb_A Transient receptor pote 20.6 3.1E+02 0.011 23.2 7.8 24 29-52 5-28 (256)
362 3mwm_A ZUR, putative metal upt 20.5 1.9E+02 0.0066 22.1 5.6 46 99-144 18-63 (139)
363 1otr_A Protein CUE2; protein-p 20.1 1.6E+02 0.0054 17.9 4.8 39 521-560 6-44 (49)
364 3bqo_A Telomeric repeat-bindin 20.1 3.7E+02 0.013 22.2 7.9 28 538-565 121-148 (211)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-40 Score=342.61 Aligned_cols=485 Identities=8% Similarity=-0.015 Sum_probs=396.0
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcch
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSL 112 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (601)
+.+.|.+..+...+.. .+.++...|+.++..|.+.|++++|..+|++|.+ ..|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNT-----DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCcccc-----chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 4445666666666655 3447889999999999999999999999999985 46788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------------------chhHHHHHHHHHhc
Q 045105 113 GKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKN-------------------EVSCNTIIVGYCEN 173 (601)
Q Consensus 113 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~li~~~~~~ 173 (601)
|..+++.+... +++..+++.++.+|.+.|++++|.++|+++...+ ..+|+.++.+|.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999988653 6788999999999999999999999999655333 67899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHH--H-HHHHHHcCCCCCChhhHHHHHHHhcccCCHHHH
Q 045105 174 GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFS--M-FRDLLMRDGIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~--~-~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
|++++|.++|++|...+ +.+...+..+...+...+..+.+.. + +..+.. .+..+...+|..++..|.+.|++++|
T Consensus 214 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK-EDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG-GGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCccccc-chHHHHHHHHHHHHHHHcCcchHHHH
Confidence 99999999999998765 2344455555554443332222111 1 333333 34444556677778889999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC
Q 045105 251 KEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP 330 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 330 (601)
.++++.+.+. +++..+++.++.+|.+.|++++|..+|+ ++.+.+ +.
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------~~~~~~----------------------~~ 337 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT----------KILEID----------------------PY 337 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH----------HHHHHC----------------------TT
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH----------HHHHcC----------------------cc
Confidence 9999998766 5889999999999999999999999999 554221 22
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|..+|+++. +.+..+|+.++.+
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678889999999999999999999998654 4578889999999999999999999999875 4567899999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999864 4577899999999999999999999998777654 44678999999999999999999
Q ss_pred HHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 488 YEFIKKI-------PMAPD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 488 ~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
+++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+..|+++.++..++.+|.+.|++++|.+.++
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999887 44676 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC
Q 045105 559 KMKDRRM 565 (601)
Q Consensus 559 ~~~~~~~ 565 (601)
++.+..+
T Consensus 575 ~~l~~~p 581 (597)
T 2xpi_A 575 ESLAISP 581 (597)
T ss_dssp HHHHHCT
T ss_pred HHHhcCC
Confidence 9988763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-40 Score=344.92 Aligned_cols=499 Identities=8% Similarity=-0.062 Sum_probs=410.4
Q ss_pred CCCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 4 KCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
+.|.+..+...|...+.++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4566777778888877788899999999999999999999999999863 4677899999999999999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh---------------cCCCchHHHHHHHHHHHhcCCHHHH
Q 045105 84 RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRN---------------GFMSNPFVVNGLVDVYRRCGDMLSA 148 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~~~~~~a 148 (601)
++... +++..+++.++.++.+.|++++|.++|+++... |.+++..+++.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 98653 788899999999999999999999999953221 2234678999999999999999999
Q ss_pred HHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHH--HH-HHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 149 LKIFSKFSI--K-NEVSCNTIIVGYCENGNVAEAR--EL-FDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 149 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~--~~-~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
.+.|+++.. | +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.
T Consensus 220 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 999999873 3 3445555555444333332221 11 4555555555566677778889999999999999999987
Q ss_pred HcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 223 MRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 223 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
. .+++..++..++..+.+.|++++|.++|+.+.+.+ +.+..+++.++.+|.+.|++++|..+++ .+
T Consensus 300 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~----------~~ 365 (597)
T 2xpi_A 300 G---LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISN----------DL 365 (597)
T ss_dssp T---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHH----------HH
T ss_pred c---CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH----------HH
Confidence 5 25889999999999999999999999999999876 4478889999999999999999999998 44
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS 382 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 382 (601)
.+. .+.+..++..+...|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|+
T Consensus 366 ~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 366 VDR----------------------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHH----------------------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred Hhh----------------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 411 23456788889999999999999999999998864 3467899999999999999
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 383 LKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 383 ~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
+++|..+|+++. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+.+
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999875 4578899999999999999999999999999864 556789999999999999999999999777
Q ss_pred Hhc----CCCcC--chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 045105 460 AYY----DVKPS--LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEP 531 (601)
Q Consensus 460 ~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 531 (601)
.+. +..|+ ..+|..++.+|.+.|++++|++.++++ ...| +..+|..+...|...|++++|.+.++++.+++|
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 665 66777 679999999999999999999999987 3345 789999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHH
Q 045105 532 NNTGNYVMLANLFA 545 (601)
Q Consensus 532 ~~~~~~~~l~~~~~ 545 (601)
+++..+..++.+|.
T Consensus 582 ~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 582 NEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHh
Confidence 99999999988774
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.6e-29 Score=247.22 Aligned_cols=207 Identities=13% Similarity=0.116 Sum_probs=152.1
Q ss_pred HHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---------cc
Q 045105 41 EALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK---------LS 111 (601)
Q Consensus 41 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~ 111 (601)
.+..+.+.+.+.+....+...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666655333333456888899999999999999999999999999999999999999887654 45
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045105 112 LGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGV 191 (601)
Q Consensus 112 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 191 (601)
.|.++|++|.+.|+.||..+|+.+|.+|++.|+ +++|.++|++|...|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~-------------------------------~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDD-------------------------------PEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-------------------------------HHHHHHHHHHHHHcCC
Confidence 678888888888888877777777666666554 4455556666667778
Q ss_pred CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 045105 192 QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGA 271 (601)
Q Consensus 192 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 271 (601)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..||+.
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 88888888888888888888888888888877 78888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhc
Q 045105 272 LVEMYCRY 279 (601)
Q Consensus 272 li~~~~~~ 279 (601)
++..|+..
T Consensus 216 l~~~F~s~ 223 (501)
T 4g26_A 216 IEEWFKSE 223 (501)
T ss_dssp HHHHHHSH
T ss_pred HHHHHhcC
Confidence 88877754
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.1e-25 Score=221.18 Aligned_cols=377 Identities=11% Similarity=0.045 Sum_probs=237.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
...+.+.|++++|++.++.+.+ ..|.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3445566667777766666665 334445555666666666666666666666655542 3345556666666666666
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHL 189 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (601)
+++|...|+.+.+.. +.+... |..+..++.+.|++++|.+.|+++...
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDG-------------------------------YINLAAALVAAGDMEGAVQAYVSALQY 130 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHH-------------------------------HHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHH-------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666555532 222333 444444444555555555555555444
Q ss_pred CCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhH
Q 045105 190 GVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFV 268 (601)
Q Consensus 190 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (601)
. +.+...+..+...+...|++++|.+.|+++.. ..|+ ..++..+...+...|+++.|...++.+.+.. +.
T Consensus 131 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---- 201 (388)
T 1w3b_A 131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN---- 201 (388)
T ss_dssp C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT----
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC----
Confidence 2 22334455566666667777777777776665 1222 2233333333333333333333333332221 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCch
Q 045105 269 GGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATM 348 (601)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 348 (601)
T Consensus 202 -------------------------------------------------------------------------------- 201 (388)
T 1w3b_A 202 -------------------------------------------------------------------------------- 201 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 349 ERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
+...+..+...+...|++++|...|++.. +.+..++..+...|...|++++|+..|+++.
T Consensus 202 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 202 -----------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp -----------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11222233333333444444444443332 2345567777788888888888888888888
Q ss_pred HCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 045105 426 ASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMW 503 (601)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 503 (601)
+.. +.+..+|..+..++.+.|++++|...++.+.+.. +.+..++..+...+.+.|++++|++.++++ ...| +..++
T Consensus 265 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 853 3345678888889999999999999997766653 556778899999999999999999999887 4445 57789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
..+...+.+.|++++|.+.++++.+..|+++.++..++.++...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.9e-28 Score=243.06 Aligned_cols=210 Identities=11% Similarity=0.045 Sum_probs=145.0
Q ss_pred HHHHHHHHHHcCCCCCCh-hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhH
Q 045105 214 AFSMFRDLLMRDGIEPTS-FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEI 292 (601)
Q Consensus 214 a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 292 (601)
+..+.+++.+ .+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+....+
T Consensus 9 ~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 9 SENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3444555554 5555544 357788888888999999999999998888888888888888888876643211
Q ss_pred HHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhH
Q 045105 293 ENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTA 372 (601)
Q Consensus 293 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (601)
......-.++.+|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 22223334567777777778888888888888888887888888888877777777777777777
Q ss_pred HHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc
Q 045105 373 LVDMYAKCGSLKHARLAYKRIS----TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (601)
+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 7777777777777777777765 4677777777777777777777777777777777777777777777766553
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.4e-25 Score=215.37 Aligned_cols=356 Identities=12% Similarity=0.024 Sum_probs=259.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHH
Q 045105 169 GYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLR 248 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 248 (601)
.+.+.|++++|.+.+.++.... +.+...+..+...+...|++++|...++.... ..+.+...|..+...+...|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHH
Confidence 3444555555555555554432 22333444444555555666666655555543 12334455555555566666666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCC
Q 045105 249 KGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDL 328 (601)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 328 (601)
+|...++.+.+.. +.+...+..+..++.+.|++++|...|+ .+.+ .
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~----------~al~-----------------------~ 130 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYV----------SALQ-----------------------Y 130 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHH----------HHHH-----------------------H
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHH----------HHHH-----------------------h
Confidence 6666666555542 2234456666666667777777766666 3321 1
Q ss_pred CCC-HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHH
Q 045105 329 TPD-IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAM 404 (601)
Q Consensus 329 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l 404 (601)
.|+ ...+..+...+...|++++|...+..+.+.. +.+...+..+...+.+.|++++|...|+++. +.+...|..+
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 122 2234455566667777777777777777654 2356778888889999999999999998876 3456688889
Q ss_pred HHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 405 LTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
...+...|++++|+..+++..... +.+..++..+..++...|++++|...++.+.+.. +.+..++..+..++.+.|++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998853 3346788999999999999999999997776643 33467899999999999999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 485 GEAYEFIKKI-PM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 485 ~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
++|++.++++ .. +.+..++..+...+...|++++|.+.++++.+..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999988 22 447889999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 045105 563 RR 564 (601)
Q Consensus 563 ~~ 564 (601)
..
T Consensus 368 ~~ 369 (388)
T 1w3b_A 368 IS 369 (388)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.9e-23 Score=211.35 Aligned_cols=450 Identities=8% Similarity=-0.062 Sum_probs=296.0
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHH
Q 045105 59 LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDV 138 (601)
Q Consensus 59 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 138 (601)
...|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|+++.|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455666677777777777777777777653 667777777777777777777777777776654 3344556666666
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 139 YRRCGDMLSALKIFSKFSI---KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
+.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------ 150 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE------------ 150 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH------------
Confidence 6666666666655554431 1222222333333322222222222222222221121111111000
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---cCCHHHHHHHhhhH
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR---YQDLVAAQMAFDEI 292 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~ 292 (601)
. .......|+.......+..+........ ..-+.+...+..+...+.. .|++++|...|+
T Consensus 151 -~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-- 213 (514)
T 2gw1_A 151 -R----KDKQENLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFT-- 213 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH--
T ss_pred -H----HhhccCCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH--
Confidence 0 0001122333222222221111111000 0001224444444444554 899999999998
Q ss_pred HHHHHHHhhchh-----cCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCch
Q 045105 293 ENIENLLGKMKE-----DGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDV 367 (601)
Q Consensus 293 ~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (601)
.+.+ ..-.|+.... .+.+...+..+...+...|+++.|...+..+.+.... .
T Consensus 214 --------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~ 270 (514)
T 2gw1_A 214 --------KAARLFEEQLDKNNEDEKL-------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--V 270 (514)
T ss_dssp --------HHHHHHHHHTTTSTTCHHH-------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--H
T ss_pred --------HHHHHhhhhhccCcccccc-------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--H
Confidence 3332 1001111100 0123456778888999999999999999999987654 8
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh
Q 045105 368 HIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
..+..+...+...|++++|...++.+. +.+...+..+...|...|++++|+..+++..+.. +.+...+..+...+.
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHH
Confidence 888889999999999999999998875 3466788999999999999999999999999864 335568888999999
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---c
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI----PMAPD----SVMWGALLGGCVS---H 513 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~---~ 513 (601)
..|++++|...++.+.+.. +.+...+..+...|.+.|++++|...++++ +..++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999997766543 345678889999999999999999999887 21222 3488899999999 9
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 514 GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
|++++|.+.++++.+..|+++.++..++.+|...|++++|.+.+++..+..+
T Consensus 429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988764
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.6e-22 Score=204.19 Aligned_cols=449 Identities=10% Similarity=-0.006 Sum_probs=320.0
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
..+..+...+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|++.++++.+.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 456777889999999999999999999852 689999999999999999999999999998864 4456789999999
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI----KNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a 179 (601)
+...|++++|...|+.+.+.+ +++......++..+........+.+.+..+.. ++...+..-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER---------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH----------
Confidence 999999999999999999876 34445555555555444333333333332221 111111000000
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhc---ccCCHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACA---DMNSLRKGKEIHA 255 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~---~~~~~~~a~~~~~ 255 (601)
.......|+.. .+..+........... .-..|+ ...+......+. +.|+++.|...++
T Consensus 152 ------~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 152 ------KDKQENLPSVT----SMASFFGIFKPELTFA--------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -----------CCCCHH----HHHHHHTTSCCCCCCS--------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred ------HhhccCCchhH----HHHHHHhhcCHHHHHH--------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 00000011111 1111111111100000 000122 222222222222 4788888888888
Q ss_pred HHHH-----cCC--------CCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHH
Q 045105 256 LAIA-----LGL--------QSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSE 322 (601)
Q Consensus 256 ~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (601)
.+.+ ..- +.+..++..+..++...|++++|...++ ...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~----------~~l~~----------------- 266 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK----------KAIEL----------------- 266 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH----------HHHHH-----------------
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHH----------HHHhh-----------------
Confidence 8877 311 2235677888999999999999999998 44321
Q ss_pred HHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChh
Q 045105 323 MLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLV 399 (601)
Q Consensus 323 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~ 399 (601)
.|+...+..+...+...|+++.|...+..+.+.. +.+...+..+...+...|++++|...|+++. +.+..
T Consensus 267 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 339 (514)
T 2gw1_A 267 ------FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF 339 (514)
T ss_dssp ------CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH
T ss_pred ------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH
Confidence 2335667888899999999999999999988764 3367788889999999999999999999875 44567
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-CcC----chHHHHH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV-KPS----LKHYTCM 474 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 474 (601)
.+..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+..... .++ ...+..+
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 88899999999999999999999998863 33456888899999999999999999966555321 122 3388899
Q ss_pred HHHhhh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 045105 475 VDLLSR---AGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 475 ~~~~~~---~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
..++.. .|++++|.+.++++ ...| +..++..+...|...|++++|.+.++++.+..|+++..+..+
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999 99999999999987 2334 677888999999999999999999999999999877776655
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4e-21 Score=197.62 Aligned_cols=434 Identities=11% Similarity=-0.007 Sum_probs=216.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 045105 62 WSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR 141 (601)
Q Consensus 62 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 141 (601)
|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 3334444444444444444444444331 2233344444444444444444444444444432 2233444445555555
Q ss_pred cCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCeeehHHHHHHHHhCCChhHHHHHHH
Q 045105 142 CGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLG--VQRGIISWNSMISGYVDNSLYDEAFSMFR 219 (601)
Q Consensus 142 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 219 (601)
.|++++|...|+.+. .+.......+..+...+....|...++++.... ..+........+..+....+.+.+...+.
T Consensus 106 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 555555555554221 111111222333333444455666666654321 11222233444555556666665555443
Q ss_pred HHHHcCCCCCChhhHHHHHH-Hhcc--------cCCHHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcCCHHH
Q 045105 220 DLLMRDGIEPTSFTFGSVLI-ACAD--------MNSLRKGKEIHALAIALGLQSD------TFVGGALVEMYCRYQDLVA 284 (601)
Q Consensus 220 ~~~~~~~~~p~~~~~~~ll~-~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~ 284 (601)
... ...|....+...+. .+.. .|+++.|..+++.+.+...... ..++..+...+...|++++
T Consensus 185 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 185 TSS---NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCC---SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hcc---ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 321 12222222222221 1111 1356666666666665432211 1235555666777777777
Q ss_pred HHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCC
Q 045105 285 AQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYD 364 (601)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (601)
|...++ ...+ ..|+...+..+...+...|+++.|...+..+.+...
T Consensus 262 A~~~~~----------~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 307 (537)
T 3fp2_A 262 AQVLLQ----------ESIN-----------------------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP- 307 (537)
T ss_dssp HHHHHH----------HHHH-----------------------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-
T ss_pred HHHHHH----------HHHh-----------------------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-
Confidence 777777 3331 123445566667777777777777777777766542
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHH
Q 045105 365 SDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALS 441 (601)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 441 (601)
.+..++..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+...+..+..
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 386 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAE 386 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 245566666666777777777777766654 2344566666666677777777777777666642 233445666666
Q ss_pred HHhccCchHHHHHHHHHHHhcCCC-cC----chHHHHHHHHhhhc----------CChHHHHHHHHhC-CCCC-CHHHHH
Q 045105 442 ACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYTCMVDLLSRA----------GELGEAYEFIKKI-PMAP-DSVMWG 504 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~~-~~~~~~ 504 (601)
.+...|++++|...++...+.... ++ ...+..+..++.+. |++++|+..++++ ...| +...+.
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 466 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 666677777777766444332211 00 11122233445555 6666666666655 2223 445566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
.+...|...|++++|.+.++++.++.|+++..
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 66666666666666666666666666654433
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=6.5e-21 Score=191.31 Aligned_cols=217 Identities=12% Similarity=0.107 Sum_probs=180.8
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCCh
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHG 414 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 414 (601)
+...+...|+++.|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++. +.+..+|..+...|...|++
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3455777899999999999998865 3477888899999999999999999999886 46778999999999999999
Q ss_pred hhHHHHHHHHHHCCCCccH-HhHHHH------------HHHHhccCchHHHHHHHHHHHhcCCCcC-----chHHHHHHH
Q 045105 415 KEGIAHFRRILASGFRPDH-ISFLSA------------LSACVHAGSIKTGSEFFDLMAYYDVKPS-----LKHYTCMVD 476 (601)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 476 (601)
++|+..|+++... .|+. ..+..+ ...+...|++++|...++.+... .|+ ...+..+..
T Consensus 228 ~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 228 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 9999999999975 4443 444444 78899999999999999776664 344 347888899
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH-----------
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANL----------- 543 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~----------- 543 (601)
++.+.|++++|+..++++ ...| +...|..+..+|...|++++|.+.++++.++.|+++.++..++.+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchh
Confidence 999999999999999987 3345 688999999999999999999999999999999999999998854
Q ss_pred -HHHcC-----CHHHHHHHHHH
Q 045105 544 -FAYAG-----RWSDLARTRQK 559 (601)
Q Consensus 544 -~~~~g-----~~~~A~~~l~~ 559 (601)
|...| +.+++.+.+++
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHhCCCccCCHHHHHHHHHH
Confidence 44444 55666777665
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2e-20 Score=192.35 Aligned_cols=429 Identities=11% Similarity=-0.001 Sum_probs=316.0
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...|..+...+.+.|++++|+..|+++.+ ..+.+..+|..+..+|.+.|++++|++.+++..+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45678888999999999999999999998 456788999999999999999999999999998864 446778888999
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK------NEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 176 (601)
.+...|++++|...|+ .... .|+. ....+..+...+....|...++.+... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999996 3332 2221 122344455566667888888887632 222234455556667777
Q ss_pred HHHHHHHHHHHhcCCCCCee-ehHHHHHHHHh--------CCChhHHHHHHHHHHHcCCCCCCh--------hhHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGII-SWNSMISGYVD--------NSLYDEAFSMFRDLLMRDGIEPTS--------FTFGSVLI 239 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~--------~~~~~ll~ 239 (601)
+.+...+...... .+... ....+...+.. .|++++|..+++++.. ..|+. ..+..+..
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HCCCcchhhHHHHHHHHHHHH
Confidence 6665554443321 11111 22222222222 2478999999999875 34442 24556667
Q ss_pred HhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHH
Q 045105 240 ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQL 319 (601)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (601)
.+...|+++.|...++.+.+.. |+...+..+..+|...|++++|...++ ...+.
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~-------------- 305 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ----------KAVDL-------------- 305 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH----------HHHHH--------------
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH----------HHhcc--------------
Confidence 7888999999999999999875 447888899999999999999999998 43311
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CC
Q 045105 320 FSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TP 396 (601)
Q Consensus 320 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~ 396 (601)
.+.+..++..+...+...|+++.|...++.+.+... .+...+..+...+...|++++|...++++. +.
T Consensus 306 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 306 --------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 123577889999999999999999999999998753 356788889999999999999999999876 45
Q ss_pred ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCC-c----cHHhHHHHHHHHhcc----------CchHHHHHHHHHHHh
Q 045105 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFR-P----DHISFLSALSACVHA----------GSIKTGSEFFDLMAY 461 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~ 461 (601)
+...+..+...|...|++++|...|+++.+.... + ....+......+... |++++|...++...+
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 5678999999999999999999999998875311 1 111234445667777 999999999977666
Q ss_pred cCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH
Q 045105 462 YDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS 500 (601)
Q Consensus 462 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 500 (601)
.. +.+...+..+..+|.+.|++++|.+.|+++ ...|+.
T Consensus 457 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 457 LD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 53 345678899999999999999999999987 334543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=9.7e-20 Score=182.73 Aligned_cols=254 Identities=10% Similarity=-0.002 Sum_probs=150.1
Q ss_pred hHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 045105 10 DAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQ 86 (601)
Q Consensus 10 ~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 86 (601)
.+...|.++... +...+..+...+.+.|++++|+.+|+.+.+ ..+.+..+|..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444432 345677777788888888888888888777 355677788888888888888888888888887
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch---HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhH
Q 045105 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP---FVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSC 163 (601)
Q Consensus 87 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (601)
+.+ +.+..++..+...+...|++++|...|+.+.+.. +.+. ..+..+...+...+ +
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-------------------~ 146 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR-------------------L 146 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-------------------H
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-------------------H
Confidence 763 3346677777777888888888888888877653 2233 44444444321111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
..+...+.+.|++++|...|+++.... +.+..++..+..+|.+.|++++|+..|+++... .+.+..++..+...+..
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 122334555566666666666665543 234455666666666666666666666665542 12344555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHH------------HHHHHHhcCCHHHHHHHhh
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTFVGGA------------LVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~g~~~~a~~~~~ 290 (601)
.|+++.|...++.+.... +.+...+.. +..++.+.|++++|...|+
T Consensus 224 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666665442 112222222 2566666777777766666
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=3.2e-17 Score=158.88 Aligned_cols=322 Identities=11% Similarity=0.048 Sum_probs=155.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 045105 161 VSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240 (601)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 240 (601)
..+..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...++++... .|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~----------- 68 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL---KM----------- 68 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC-----------
Confidence 345555666666666666666666666543 234455556666666666666666666665541 22
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCC---C-hhhhhH
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEP---N-VYTWNA 316 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~---~-~~~~~~ 316 (601)
.+...+..+..+|...|++++|...++ ...+. .| + ...+..
T Consensus 69 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~----------~~~~~--~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 69 -----------------------DFTAARLQRGHLLLKQGKLDEAEDDFK----------KVLKS--NPSEQEEKEAESQ 113 (359)
T ss_dssp -----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHH----------HHHTS--CCCHHHHHHHHHH
T ss_pred -----------------------CcchHHHHHHHHHHHcCChHHHHHHHH----------HHHhc--CCcccChHHHHHH
Confidence 123344455555555555555555555 22211 11 0 000000
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC--
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-- 394 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 394 (601)
+..+.. ...+..+...+...|+++.|...+..+.+... .+...+..+...+...|++++|...++++.
T Consensus 114 l~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 114 LVKADE---------MQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL 183 (359)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHH---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000000 00112234455566677777777766665542 344555566666666666666666665544
Q ss_pred -CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHH------------HHHHHHhccCchHHHHHHHHHHHh
Q 045105 395 -TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFL------------SALSACVHAGSIKTGSEFFDLMAY 461 (601)
Q Consensus 395 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~ 461 (601)
+.+...+..+...|...|++++|...+++..+.. +.+...+. .+...+.+.|++++|...++...+
T Consensus 184 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344555566666666666666666666665532 11122221 113334445555555555533333
Q ss_pred cCCCcCc----hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 462 YDVKPSL----KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 462 ~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
.... +. ..+..+..++.+.|++++|++.+++. ...| +...+..+...+...|++++|.+.++++.+.+|+++.
T Consensus 263 ~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 263 TEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred cCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 2211 11 11223344444555555555555444 1122 3444444444555555555555555555555554444
Q ss_pred hHHHHHHHH
Q 045105 536 NYVMLANLF 544 (601)
Q Consensus 536 ~~~~l~~~~ 544 (601)
+...+..+.
T Consensus 342 ~~~~l~~~~ 350 (359)
T 3ieg_A 342 IREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=2.8e-17 Score=159.30 Aligned_cols=297 Identities=8% Similarity=-0.008 Sum_probs=228.5
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhh
Q 045105 234 FGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYT 313 (601)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 313 (601)
+..+...+...|+++.|...++.+.+.. +.+..++..+..++...|++++|...++ ...+.
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~----------~~~~~-------- 66 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLT----------KVIAL-------- 66 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH----------HHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHH----------HHHHh--------
Confidence 3334444455555555555555555443 3345677788888889999999998888 33311
Q ss_pred hhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCC--CchhHHhHH------------HHHHHh
Q 045105 314 WNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYD--SDVHIGTAL------------VDMYAK 379 (601)
Q Consensus 314 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~ 379 (601)
.+.+...+..+...+...|++++|...+..+.+.... .+...+..+ ...+..
T Consensus 67 --------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 67 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124566788888999999999999999998875430 234444444 578889
Q ss_pred cCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH
Q 045105 380 CGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
.|++++|...++++. +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999876 4567788899999999999999999999999863 556678999999999999999999999
Q ss_pred HHHHhcCCCcCchHHH------------HHHHHhhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhH
Q 045105 457 DLMAYYDVKPSLKHYT------------CMVDLLSRAGELGEAYEFIKKI-PMAPD-S----VMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~g~~~~ 518 (601)
+...+.. +.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 7666543 22233332 2366788999999999999887 23443 2 234457788899999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 519 GQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
|.+.++++.+..|+++.++..++.++...|++++|.+.++++.+..+
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999987753
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.6e-15 Score=155.00 Aligned_cols=425 Identities=10% Similarity=0.056 Sum_probs=263.1
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHHHHH
Q 045105 93 NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTIIVGY 170 (601)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~ 170 (601)
+...|..++.. .+.|+++.|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|++... |+...|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55567766663 5667777777777777765 244566777777777777777777777777653 4444455444322
Q ss_pred -HhcCCHHHHHH----HHHHHHh-cCCCC-CeeehHHHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCCh---
Q 045105 171 -CENGNVAEARE----LFDQMEH-LGVQR-GIISWNSMISGYVD---------NSLYDEAFSMFRDLLMRDGIEPTS--- 231 (601)
Q Consensus 171 -~~~g~~~~a~~----~~~~m~~-~g~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~--- 231 (601)
...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.+. . |..
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~---P~~~~~ 165 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N---PMINIE 165 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S---CCTTHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c---hhhhHH
Confidence 33455555544 5555443 24333 33445555554433 4556666666666553 1 221
Q ss_pred hhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCCh
Q 045105 232 FTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNV 311 (601)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (601)
..|..........+ ..+...++. .+.+++..|..++..++.....+..... .+.|+.
T Consensus 166 ~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~-~~~p~~ 222 (530)
T 2ooe_A 166 QLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP-SVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC-CCCCC-
T ss_pred HHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc-cCCCCC
Confidence 11111110000000 000011111 1234566666666644443333322110 012211
Q ss_pred hh--hhHHHHHHHHHhCCCCCCHhHHHHHHHHhc----CCCch----hhHHHHHHHHHHhCCCCchhHHhHHHHHHHh--
Q 045105 312 YT--WNAMQLFSEMLSLDLTPDIYTVGIILSACS----SLATM----ERGKQVHAYAIRCGYDSDVHIGTALVDMYAK-- 379 (601)
Q Consensus 312 ~~--~~~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 379 (601)
.. ... ...|...+.... ..++. .++..+++...... +.++..|..++..+.+
T Consensus 223 ~~~~~~~---------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~ 286 (530)
T 2ooe_A 223 TPQEAQQ---------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSS 286 (530)
T ss_dssp -CCHHHH---------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred ChhHHHH---------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 00 000 112222222111 11222 36667788777653 3467788888888775
Q ss_pred -----cCChH-------HHHHHHhcCCC---C-ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccH--HhHHHHHH
Q 045105 380 -----CGSLK-------HARLAYKRIST---P-DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDH--ISFLSALS 441 (601)
Q Consensus 380 -----~g~~~-------~a~~~~~~~~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~ 441 (601)
.|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++++. .|+. ..|..++.
T Consensus 287 ~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 287 KLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMK 364 (530)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHH
Confidence 79987 89999998763 3 4678889999999999999999999999984 5643 47888888
Q ss_pred HHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH-hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 045105 442 ACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL-LSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 518 (601)
.+.+.|++++|..+|+...+.. +.+...|...... +...|+.++|..+|++. ...| +...|..++..+.+.|+.++
T Consensus 365 ~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 365 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 8889999999999997655532 2223333322222 33689999999999977 3345 57889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCc----hHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 519 GQIAADRLIELEPNNTG----NYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
|..+++++.+..|.++. .+...+......|+.+.+..+.+++.+.-+
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999876665 777778888889999999999998876554
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.4e-14 Score=153.32 Aligned_cols=409 Identities=11% Similarity=0.095 Sum_probs=283.5
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH
Q 045105 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL--EPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL 135 (601)
Q Consensus 58 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 135 (601)
++.--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +.....++.+.+... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 334446678888899999999999999884321 12234455566666665 555555555554421 13346
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHH
Q 045105 136 VDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAF 215 (601)
Q Consensus 136 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~ 215 (601)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 6778888999999999998751 1122222222 678889988888865 34667888999999999999999
Q ss_pred HHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHH
Q 045105 216 SMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENI 295 (601)
Q Consensus 216 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 295 (601)
+.|.+. -|...|..+..++.+.|+++++.+++....+.. +++...+.++.+|++.+++++......
T Consensus 1126 dsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~----- 1191 (1630)
T 1xi4_A 1126 DSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN----- 1191 (1630)
T ss_pred HHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-----
Confidence 998652 367778888999999999999999998877755 333334458888888888775433322
Q ss_pred HHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 296 ENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...+..+...|...|++++|..+|... ..|..+..
T Consensus 1192 ---------------------------------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~ 1229 (1630)
T 1xi4_A 1192 ---------------------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 1229 (1630)
T ss_pred ---------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHH
Confidence 234445666888888999999999999874 36888899
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHH
Q 045105 376 MYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEF 455 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 455 (601)
.|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+
T Consensus 1230 tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999877 4457888888888888888888776654 233455566888888889999999999
Q ss_pred HHHHHhcCCCcCchHHHHHHHHhhh--cCChHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 045105 456 FDLMAYYDVKPSLKHYTCMVDLLSR--AGELGEAYEFIKKI-PMA------PDSVMWGALLGGCVSHGNLEFGQIAADRL 526 (601)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 526 (601)
++...... +-....|+-|..+|.+ -++..++.++|..- .+. -+...|..++..|.+.|+++.|....-.-
T Consensus 1303 lE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1303 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 85544332 3334466666666654 34566666666543 322 24567888888888888888887433222
Q ss_pred Hhc------------CCCCCchHHHHHHHHHHcC
Q 045105 527 IEL------------EPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 527 ~~~------------~p~~~~~~~~l~~~~~~~g 548 (601)
... .+.++..|...+..|...+
T Consensus 1382 ~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1382 PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 111 3457777777777776655
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=6e-17 Score=154.92 Aligned_cols=288 Identities=13% Similarity=0.044 Sum_probs=176.2
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGAL 272 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (601)
.+...+..+...+...|++++|+++|+++.... +.+...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 344445555555555566666666665555421 1222333334444445555555555555554432 2234445555
Q ss_pred HHHHHhcC-CHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhH
Q 045105 273 VEMYCRYQ-DLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERG 351 (601)
Q Consensus 273 i~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 351 (601)
...+...| ++++|...|+ ...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~----------~a~------------------------------------------------ 118 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLS----------KAT------------------------------------------------ 118 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHH----------HHH------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHH----------HHH------------------------------------------------
Confidence 55555566 5666655555 222
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCC
Q 045105 352 KQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASG 428 (601)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 428 (601)
+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...+++..+..
T Consensus 119 --------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 119 --------TLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp --------TTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --------HhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 111 1123334445555555555555555555543 2234555667777777788888888888777753
Q ss_pred CCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC--------CCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-
Q 045105 429 FRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD--------VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP- 498 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~- 498 (601)
+.+...+..+...+...|++++|...++...+.. .+....++..+..+|...|++++|++.++++ ...|
T Consensus 190 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 190 -PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 3445677777778888888888888885544421 1333567788888888888888888888776 2233
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCHH
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF-AYAGRWS 551 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 551 (601)
+...+..+...+...|++++|.+.++++.+..|+++..+..++.++ ...|+.+
T Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 5677888888888888898999999988888888888888888887 4555543
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.4e-17 Score=157.90 Aligned_cols=251 Identities=16% Similarity=0.144 Sum_probs=103.6
Q ss_pred CCCCchhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 045105 4 KCGSLDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLF 83 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 83 (601)
+.|++++|.+.++++.+| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567888999999988555 4888999999999999999998865 2567788888999999999999999777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhH
Q 045105 84 RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSC 163 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 163 (601)
..++. .+++.+.+.++.+|.+.|++..+.++++ .|+..+|..+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 66663 5557778888889999888888887774 366678888999999999999999999877 378
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
..++.++.+.|++++|.+.+..+ .++.+|..++.+|+..|+|+.|...... +...+.....++..|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHH
Confidence 88999999999999999988887 3677888899999999999998555543 22344445567788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHhh
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY--QDLVAAQMAFD 290 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~ 290 (601)
.|.++++..+++...... +.....|+-|.-+|++. ++..+.++.|.
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 899999988888887555 44556666666666654 33444444333
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.9e-16 Score=150.29 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=79.3
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchH
Q 045105 34 AANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLG 113 (601)
Q Consensus 34 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 113 (601)
-+.|+.++|.++++++. +..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 35688999999999962 224999999999999999999999965 35777999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 045105 114 KEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQR 193 (601)
Q Consensus 114 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 193 (601)
..+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988877764 4557888999999999999999888876 367778888999999999999999998876
Q ss_pred CeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 045105 194 GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALV 273 (601)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 273 (601)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 47888888999999999988888875 2677888888888888888888443322 223333344577
Q ss_pred HHHHhcCCHHHHHHHhh
Q 045105 274 EMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 274 ~~~~~~g~~~~a~~~~~ 290 (601)
..|.+.|.+++|..+++
T Consensus 215 ~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 215 NYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 77777777777776666
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=5.3e-15 Score=149.53 Aligned_cols=364 Identities=13% Similarity=0.034 Sum_probs=220.1
Q ss_pred cCCHHHHHHHHhhcCC-CCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh----CCChh
Q 045105 142 CGDMLSALKIFSKFSI-KNEVSCNTIIVGYCE----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD----NSLYD 212 (601)
Q Consensus 142 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~ 212 (601)
.+++++|...|++... .+...+..+...|.. .+++++|.+.|++....| +...+..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444433321 133334444444444 444555555554444432 22333444444444 44555
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHH
Q 045105 213 EAFSMFRDLLMRDGIEPTSFTFGSVLIACAD----MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR----YQDLVA 284 (601)
Q Consensus 213 ~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 284 (601)
+|+..|++... .+ +...+..+-..+.. .++.+.|.+.|+...+.+ +...+..|...|.. .++.++
T Consensus 133 ~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 133 ESVKWFRLAAE-QG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 55555555443 22 23333333333333 445555555555555543 34445555555555 566666
Q ss_pred HHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC----CCchhhHHHHHHHHHH
Q 045105 285 AQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS----LATMERGKQVHAYAIR 360 (601)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~ 360 (601)
|...|+ ...+. .+...+..+...+.. .++.++|...++...+
T Consensus 206 A~~~~~----------~a~~~------------------------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 206 SAQWYR----------KSATS------------------------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHH----------HHHHT------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHH----------HHHHC------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 666655 22211 112222333333332 5667777777777666
Q ss_pred hCCCCchhHHhHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHHc-----CChhhHHHHHHHHHHCCCC
Q 045105 361 CGYDSDVHIGTALVDMYAK----CGSLKHARLAYKRIS-TPDLVSQNAMLTAYAMH-----GHGKEGIAHFRRILASGFR 430 (601)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~ 430 (601)
.+ ++..+..+...|.. .+++++|...|++.. ..+...+..+...|... +++++|+..|++..+.|
T Consensus 252 ~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 252 QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 54 34455556666666 788899999888776 35566777788888877 89999999999999875
Q ss_pred ccHHhHHHHHHHHhccC---chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHH
Q 045105 431 PDHISFLSALSACVHAG---SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGELGEAYEFIKKIPMAPDSVMW 503 (601)
Q Consensus 431 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 503 (601)
+...+..+...+...| ++++|.++|+...+.+ +...+..|...|.. .+++++|.+.+++.-...+...+
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~ 402 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQ 402 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 3445666666666655 7889999997766653 56678888888888 89999999999987323467778
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 504 GALLGGCVS----HGNLEFGQIAADRLIELEPN---NTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 504 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
..+...|.. .+|+++|...++++.+.+|+ ++.....++.++... .+.|.+..+++
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~ 464 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQY 464 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHH
Confidence 888888887 79999999999999999854 666777777665543 34444333333
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.7e-15 Score=144.75 Aligned_cols=264 Identities=11% Similarity=-0.004 Sum_probs=228.2
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
.++..+..+...+...|++++|+++|+.+.+ ..+.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVME--KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 5667888889999999999999999999988 456677888889999999999999999999998863 4456788888
Q ss_pred HHHHHhcC-CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCH
Q 045105 101 LPACARLQ-KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 101 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 176 (601)
...+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...|++.. ..+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 89999999 9999999999998865 4467789999999999999999999998876 33567788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCC-------CCCChhhHHHHHHHhcccCCHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDG-------IEPTSFTFGSVLIACADMNSLRK 249 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~ll~~~~~~~~~~~ 249 (601)
++|.+.+++..... +.+..++..+...+...|++++|...+++...... .+.....+..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998775 45667889999999999999999999998876321 13345688888999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 250 GKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
|...++...+.. +.+...+..+..+|...|++++|...++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999998875 4467888999999999999999999999
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=1.9e-13 Score=144.87 Aligned_cols=450 Identities=11% Similarity=0.057 Sum_probs=316.4
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDN-ETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++.--.....+|...|.+.+|++++++..-.+. +.-+....+.++.+..+. +..+..+..+++... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 334445667889999999999999999875311 124556777788887777 667777777776522 13446
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (601)
...+...|.+++|..+|+... ......+.++ -..+++++|.++.++.. +..+|..+..++...|++++|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 777888999999999999852 1222223332 27789999999999774 4678889999999999999999
Q ss_pred HHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 045105 181 ELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL 260 (601)
Q Consensus 181 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 260 (601)
+.|.+. .|...|..++.++.+.|++++|.+.|....+ . .+++...+.+..+|++.++++....+.+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~LafaYAKl~rleele~fI~----- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFIN----- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHHHHHHHhhcCHHHHHHHHh-----
Confidence 999663 5677888899999999999999999987665 2 2444444458888999998886555431
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 045105 261 GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILS 340 (601)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 340 (601)
.++...+..+...|...|++++|...|. .. ..|..+..
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~----------kA------------------------------~ny~rLA~ 1229 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYN----------NV------------------------------SNFGRLAS 1229 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHH----------hh------------------------------hHHHHHHH
Confidence 4455667779999999999999999999 21 25788999
Q ss_pred HhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHH
Q 045105 341 ACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH 420 (601)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 420 (601)
++++.|+++.|.+.+... .+..+|..+..+|...|+++.|...... ...+...+..++..|.+.|.+++|+.+
T Consensus 1230 tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999876 3668888889999999999999988775 445666777999999999999999999
Q ss_pred HHHHHHCCCCccH-HhHHHHHHHHh--ccCchHHHHHHHHHHHhcCCCc------CchHHHHHHHHhhhcCChHHHHHHH
Q 045105 421 FRRILASGFRPDH-ISFLSALSACV--HAGSIKTGSEFFDLMAYYDVKP------SLKHYTCMVDLLSRAGELGEAYEFI 491 (601)
Q Consensus 421 ~~~m~~~~~~p~~-~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 491 (601)
++..+.. .|.. ..|+-+...++ +.++..++.++|.. +-.+++ +...|.-++..|.+.|+++.|...+
T Consensus 1303 lE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1303 LEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9887753 4443 35544544444 44566666666642 223333 4667899999999999999998544
Q ss_pred HhC--------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 492 KKI--------------PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 492 ~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
-+. ....|+..|...+.-|...+ ..+..-+..... | ..-+...+..+.+.|++.-+..++
T Consensus 1379 ~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~--P~~lndLl~~l~--~--rlD~~R~V~l~~~~~~l~lik~yl 1452 (1630)
T 1xi4_A 1379 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLS--P--RLDHTRAVNYFSKVKQLPLVKPYL 1452 (1630)
T ss_pred HhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC--hHHHHHHHHHhh--h--cCChHHHHHHHHHcCChHHhHHHH
Confidence 332 11235555655666665433 122222222221 1 111233444455555555555555
Q ss_pred HHHhh
Q 045105 558 QKMKD 562 (601)
Q Consensus 558 ~~~~~ 562 (601)
+..+.
T Consensus 1453 ~~vq~ 1457 (1630)
T 1xi4_A 1453 RSVQN 1457 (1630)
T ss_pred HHHHH
Confidence 55443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=2.3e-16 Score=153.41 Aligned_cols=281 Identities=14% Similarity=0.046 Sum_probs=225.8
Q ss_pred CCCCCchhHHH-HHhhCCC--C-----CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC
Q 045105 3 GKCGSLDDAKK-VFKMMPE--R-----DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY 74 (601)
Q Consensus 3 ~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~ 74 (601)
.-.|++++|.+ .|++..+ | +...+..+...+.+.|++++|+..|+.+.+ ..+.+..+|..+..++...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcC
Confidence 34578999998 8887764 1 345688899999999999999999999998 566788899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHH---------------HHHHH
Q 045105 75 DEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNG---------------LVDVY 139 (601)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------l~~~~ 139 (601)
+++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998874 457788999999999999999999999999986532 2222221 23334
Q ss_pred HhcCCHHHHHHHHhhcC--CC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 140 RRCGDMLSALKIFSKFS--IK---NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 140 ~~~~~~~~a~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
...|++++|...|+++. .| +..++..+...+.+.|++++|...|+++.... +.+..+|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999876 23 46788999999999999999999999998764 44567899999999999999999
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC----------chhHHHHHHHHHHhcCCHHH
Q 045105 215 FSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQS----------DTFVGGALVEMYCRYQDLVA 284 (601)
Q Consensus 215 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~ 284 (601)
...|+++... .+.+...+..+..++...|++++|...++.+.+..... ...+|..+..+|...|+.++
T Consensus 271 ~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 271 VAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999998862 23456778888999999999999999999988753222 26789999999999999999
Q ss_pred HHHHhh
Q 045105 285 AQMAFD 290 (601)
Q Consensus 285 a~~~~~ 290 (601)
|..++.
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 998887
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=6.6e-16 Score=143.82 Aligned_cols=246 Identities=9% Similarity=-0.024 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc
Q 045105 268 VGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347 (601)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 347 (601)
....+..+|...|+++.|...++ .. -+|+..++..+...+...++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~----------~~-------------------------~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIK----------PS-------------------------SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSC----------TT-------------------------SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhc----------cc-------------------------CChhHHHHHHHHHHHcCCCc
Confidence 34456778888888888876555 11 13455667778888888889
Q ss_pred hhhHHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDS-DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILA 426 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 426 (601)
.+.|...++.+...+..| ++..+..+...+...|++++|...+++ ..+...+..++..|.+.|++++|...|+++.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999888876544 556666777899999999999999998 56778899999999999999999999999998
Q ss_pred CCCCccHHhH---HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHH
Q 045105 427 SGFRPDHISF---LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSV 501 (601)
Q Consensus 427 ~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~ 501 (601)
. .|+.... ..++..+...|++++|..+|+.+.+. .+.+...++.+..++.+.|++++|+..++++ ...| +..
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 6 4554311 22334445568999999999777766 4567788999999999999999999999987 4455 677
Q ss_pred HHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 502 MWGALLGGCVSHGNLEF-GQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
++..++..+...|+.++ +.+.++++.+.+|+++.+.. ...+.+.++++..-+
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 88889989999998865 67899999999998876543 455566666665443
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2.2e-14 Score=146.53 Aligned_cols=403 Identities=10% Similarity=0.043 Sum_probs=237.1
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+..+|..++. +.+.|++++|..+|+.+.+ ..|.+...|..++..+.+.|++++|.++|++..+. .|+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 5668888888 4778999999999999998 56778889999999999999999999999999876 47877777776
Q ss_pred HHH-HhcCCcchHHH----HHHHHHHh-cCCC-chHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCc---h
Q 045105 102 PAC-ARLQKLSLGKE----FHGYITRN-GFMS-NPFVVNGLVDVYRR---------CGDMLSALKIFSKFSI-KNE---V 161 (601)
Q Consensus 102 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~---~ 161 (601)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 34577777765 67766643 5443 45677777776654 6788889888887663 221 1
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHc--CC
Q 045105 162 SCNTIIVGY-------------CENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMR--DG 226 (601)
Q Consensus 162 ~~~~li~~~-------------~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~ 226 (601)
.|....... .+.++++.|..++.++... ...... ..
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-----------------------------~~~l~~~~~~ 217 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV-----------------------------MKGLDRNAPS 217 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH-----------------------------HHHCCSSSCC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH-----------------------------HHHhcccccc
Confidence 222211110 0122333444433332100 001100 00
Q ss_pred CCCCh--------hhHHHHHHHhcc----cCCH----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH
Q 045105 227 IEPTS--------FTFGSVLIACAD----MNSL----RKGKEIHALAIALGLQSDTFVGGALVEMYCR-------YQDLV 283 (601)
Q Consensus 227 ~~p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~ 283 (601)
+.|+. ..|...+..... .++. +.+..+|+...... +.+..+|..+...+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 12221 122222211111 1121 24445555555442 3345555555555554 46654
Q ss_pred -------HHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC-CHhHHHHHHHHhcCCCchhhHHHHH
Q 045105 284 -------AAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP-DIYTVGIILSACSSLATMERGKQVH 355 (601)
Q Consensus 284 -------~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 355 (601)
+|..+++ +..+ ...| +...+..+...+.+.|++++|..++
T Consensus 297 ~a~~~~~~A~~~~~----------~Al~----------------------~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 297 NAKLFSDEAANIYE----------RAIS----------------------TLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHH----------HHTT----------------------TTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhHHHHHHHH----------HHHH----------------------HhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6666666 2221 0112 2334555555556666666677666
Q ss_pred HHHHHhCCCCc--hhHHhHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHH-HHHHcCChhhHHHHHHHHHHCCC
Q 045105 356 AYAIRCGYDSD--VHIGTALVDMYAKCGSLKHARLAYKRIST--P-DLVSQNAMLT-AYAMHGHGKEGIAHFRRILASGF 429 (601)
Q Consensus 356 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~ 429 (601)
+.+.+.. |+ ...|..++..+.+.|++++|..+|++..+ | +...|..... .+...|+.++|..+|++.++..
T Consensus 345 ~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~- 421 (530)
T 2ooe_A 345 NRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY- 421 (530)
T ss_dssp HHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-
T ss_pred HHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-
Confidence 6666632 32 23566666666677777777777776653 1 1122222111 1335778888888888777642
Q ss_pred CccHHhHHHHHHHHhccCchHHHHHHHHHHHhcC-CCcC--chHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 430 RPDHISFLSALSACVHAGSIKTGSEFFDLMAYYD-VKPS--LKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+-+...|..++..+.+.|+.++|..+|+...... ..|+ ...|...+......|+.+.+.++.+++
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2245677777777777888888888885555442 2232 336666677777778888887777665
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.3e-16 Score=155.29 Aligned_cols=301 Identities=10% Similarity=-0.034 Sum_probs=189.8
Q ss_pred CChhHHHH-HHHHHHHcCCCCC--ChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 045105 209 SLYDEAFS-MFRDLLMRDGIEP--TSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAA 285 (601)
Q Consensus 209 ~~~~~a~~-~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (601)
|++++|++ .+++......-.| +...+..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 5544332111111 22334445555555566666666665555543 33445566666666666777666
Q ss_pred HHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC
Q 045105 286 QMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDS 365 (601)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (601)
...|+ ...+. .+.+..++..+...+...|++++|...+..+.+....
T Consensus 118 ~~~~~----------~al~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 164 (368)
T 1fch_A 118 ISALR----------RCLEL----------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA- 164 (368)
T ss_dssp HHHHH----------HHHHH----------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-
T ss_pred HHHHH----------HHHhc----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 66666 22211 0123344555555666666666666666666554321
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHh
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACV 444 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~ 444 (601)
+...+..+... .. ...+ ...+.. +..+...|++++|+..++++.+..... +..++..+...+.
T Consensus 165 ~~~~~~~~~~~-------~~-------~~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 165 YAHLVTPAEEG-------AG-------GAGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp TGGGCC------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-------hh-------hhcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 11111111000 00 0000 011112 223338899999999999998853111 4678888999999
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIA 522 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 522 (601)
..|++++|...++...... +.+...+..+...+.+.|++++|+..++++ ...| +...+..+...|...|++++|.+.
T Consensus 229 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999997666543 345678899999999999999999999887 3344 677899999999999999999999
Q ss_pred HHHHHhcCCCC-----------CchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 523 ADRLIELEPNN-----------TGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 523 ~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
++++.+..|++ +.++..++.+|...|++++|..++++.
T Consensus 308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999998877 789999999999999999999987643
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=7.9e-14 Score=140.93 Aligned_cols=353 Identities=12% Similarity=0.098 Sum_probs=281.1
Q ss_pred CchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCC
Q 045105 159 NEVSCNTIIVGYCE----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD----NSLYDEAFSMFRDLLMRDGIEPT 230 (601)
Q Consensus 159 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~ 230 (601)
+..++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|..+|++... .+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---C
Confidence 55566666666666 899999999999998764 45677788888888 8999999999999876 43 4
Q ss_pred hhhHHHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHhhhHHHHHHHHhhc
Q 045105 231 SFTFGSVLIACAD----MNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR----YQDLVAAQMAFDEIENIENLLGKM 302 (601)
Q Consensus 231 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 302 (601)
...+..+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|...|+ +.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~----------~a 177 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS----------KA 177 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH----------HH
Confidence 5556666666666 789999999999998876 56677778888887 789999998888 33
Q ss_pred hhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC----CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 045105 303 KEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS----LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYA 378 (601)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (601)
.+. .+...+..+...+.. .++.++|...+....+.+ ++..+..+...|.
T Consensus 178 ~~~------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 178 AEQ------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHT------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHC------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 321 133444555555555 789999999999998875 4566677777777
Q ss_pred h----cCChHHHHHHHhcCC-CCChhhHHHHHHHHHH----cCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc---
Q 045105 379 K----CGSLKHARLAYKRIS-TPDLVSQNAMLTAYAM----HGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA--- 446 (601)
Q Consensus 379 ~----~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 446 (601)
. .+++++|..+|++.. ..+...+..+...|.. .++.++|+.+|++..+.| +...+..+...+...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 6 789999999999876 4566777788888888 899999999999998865 344566667777766
Q ss_pred --CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChh
Q 045105 447 --GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG---ELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLE 517 (601)
Q Consensus 447 --g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 517 (601)
+++++|...++...+.+ +...+..+...|...| +.++|++.|++.-...++..+..+...|.. .++++
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 89999999997777755 3456777888887766 789999999987434577888888888888 79999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCc
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFAY----AGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~~~ 566 (601)
+|.+.++++.+.. ++.++..++.+|.. .+++++|...+++..+.+..
T Consensus 385 ~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 385 QAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999999999864 68899999999998 89999999999999988843
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=8.7e-18 Score=172.02 Aligned_cols=162 Identities=16% Similarity=0.215 Sum_probs=132.7
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSL--DNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
+||+||.+|++.|++++|.++|++|.+. .+..||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 7999999999999999999999887642 26789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCc-chHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHhcCC-
Q 045105 103 ACARLQKL-SLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIK-----NEVSCNTIIVGYCENGN- 175 (601)
Q Consensus 103 ~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~- 175 (601)
++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+..+ ...+...|.+.+.+.+.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~~~ 288 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRV 288 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCSCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCCCC
Confidence 99999985 789999999999999999999999998777765444444444444321 23455566666766552
Q ss_pred --------HHHHHHHHHHH
Q 045105 176 --------VAEARELFDQM 186 (601)
Q Consensus 176 --------~~~a~~~~~~m 186 (601)
.++-.++|++-
T Consensus 289 s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 289 SYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCCCSSCHHHHHHHHHHH
T ss_pred cCccccCCHHHHHHHHHHH
Confidence 35555555543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=6.6e-16 Score=150.04 Aligned_cols=263 Identities=12% Similarity=0.026 Sum_probs=214.7
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+...+..+...+.+.|++++|+..|+.+.+ ..+.+..+|..+..++...|++++|++.|++..+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345688899999999999999999999998 456788999999999999999999999999998863 44578899999
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCC---------chHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC---CchhHHHHH
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMS---------NPFVVNGLVDVYRRCGDMLSALKIFSKFS--IK---NEVSCNTII 167 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~~~li 167 (601)
..+...|++++|...++.+.+..... ...++..+...+...|++++|.+.|++.. .| +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999998864210 12233445788999999999999999886 23 567899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCH
Q 045105 168 VGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSL 247 (601)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 247 (601)
..+...|++++|.+.|++..... +.+..+|..+..++...|++++|...|++.... .+.+...+..+..++...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999998775 456778999999999999999999999998872 223467788889999999999
Q ss_pred HHHHHHHHHHHHcCCC-----------CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 248 RKGKEIHALAIALGLQ-----------SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 248 ~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
++|...++.+.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999998865321 136788999999999999999987776
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.1e-14 Score=146.91 Aligned_cols=220 Identities=9% Similarity=-0.046 Sum_probs=122.2
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMH 411 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 411 (601)
...+..+...+...|+++.|...+....+... -+..++..+...|...+....+ . ... .........
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~-----~-~~~------~~~~~~~~~ 313 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMN-----L-REN------GMYGKRKLL 313 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHH-----C-------------CHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhh-----H-HHH------HHHHHHHHH
Confidence 44556666777777777888877777776542 2344455554444321111100 0 000 000011112
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch--HHHHHHH-HhhhcCChHHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK--HYTCMVD-LLSRAGELGEAY 488 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~ 488 (601)
+..+.|...+++..+.. +.+..++..+...+...|++++|...|+...+....+... .+..+.. .+...|+.++|+
T Consensus 314 ~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34567888888877753 3334577888888999999999999997666654333221 2233332 234678999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 489 EFIKKI-PMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 489 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
..+++. .+.|+...+. +..+.+.+++++..+.+|+++.++..++.+|...|++++|.+.+++..+.+...
T Consensus 393 ~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 998876 4566544332 223456677888889999999999999999999999999999999999888665
Q ss_pred CCCcceE
Q 045105 568 SPGCSWI 574 (601)
Q Consensus 568 ~~~~~~~ 574 (601)
+...+|+
T Consensus 464 p~a~~~~ 470 (472)
T 4g1t_A 464 PSASSWN 470 (472)
T ss_dssp -------
T ss_pred CcHhhcC
Confidence 5555553
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.5e-15 Score=147.46 Aligned_cols=232 Identities=14% Similarity=0.052 Sum_probs=194.3
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++. +.+...|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 3467889999999999999999999999876 4567889999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHH-hH----------HHHHHHHhccCchHHHHHHHHHHHhcCCC-cCchHHHHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHI-SF----------LSALSACVHAGSIKTGSEFFDLMAYYDVK-PSLKHYTCMV 475 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 475 (601)
|...|++++|+..++++.+. .|+.. .+ ..+...+...|++++|...++.+...... ++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999885 44432 22 33477889999999999999766665422 2577899999
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHH
Q 045105 476 DLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 553 (601)
..|...|++++|++.++++ ...| +..+|..+...|...|++++|.+.++++.+..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 045105 554 ARTRQKMKDRRM 565 (601)
Q Consensus 554 ~~~l~~~~~~~~ 565 (601)
.+.++++.+..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999876553
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=4.5e-15 Score=141.60 Aligned_cols=262 Identities=9% Similarity=-0.026 Sum_probs=217.1
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+...+..+...+...|++++|+.+|+.+.+ ..+.+...|..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 345677788899999999999999999988 455688899999999999999999999999998863 44677888899
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHH--------------HH-HHHhcCCHHHHHHHHhhcC---CCCchhH
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGL--------------VD-VYRRCGDMLSALKIFSKFS---IKNEVSC 163 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~---~~~~~~~ 163 (601)
..+...|++++|...++.+.+... .+...+..+ .. .+...|++++|...+++.. ..+...+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 999999999999999999987642 223333333 22 3677889999999998876 3367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcc
Q 045105 164 NTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACAD 243 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 243 (601)
..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...|++.... .+.+...+..+...+..
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998765 445678899999999999999999999998862 23356778888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 244 MNSLRKGKEIHALAIALGLQS-----------DTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.|+++.|.+.++.+....... +..++..+..++.+.|+.++|..+++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999998765332 57788999999999999999999888
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=4.2e-17 Score=167.06 Aligned_cols=120 Identities=10% Similarity=0.083 Sum_probs=108.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 045105 160 EVSCNTIIVGYCENGNVAEARELFDQME---HLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGS 236 (601)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 236 (601)
..+|+++|++|++.|++++|.++|++|. ..|+.||+.|||+||.+|++.|++++|.++|++|.. .|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 3479999999999999999999998875 458899999999999999999999999999999998 999999999999
Q ss_pred HHHHhcccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 045105 237 VLIACADMNSL-RKGKEIHALAIALGLQSDTFVGGALVEMYCRYQ 280 (601)
Q Consensus 237 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (601)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 99999999984 788999999999999999999998887666543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=7.3e-15 Score=136.72 Aligned_cols=220 Identities=10% Similarity=0.069 Sum_probs=180.7
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC----CC-ChhhHHHHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS----TP-DLVSQNAMLTAY 408 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~-~~~~~~~ll~~~ 408 (601)
....+.+++...|+++.|...++. .-+|+...+..+...+...|+.++|...++++. .| +...+..+...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 345567899999999999876644 245677888889999999999999999999863 24 455667777899
Q ss_pred HHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHH---HHHHHHhhhcCChH
Q 045105 409 AMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHY---TCMVDLLSRAGELG 485 (601)
Q Consensus 409 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~ 485 (601)
...|++++|+..+++ +.+...+..+...+.+.|++++|.+.++.+.+.. |+.... ..++..+...|+++
T Consensus 112 ~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHH
Confidence 999999999999987 4566788889999999999999999997777764 553211 22334455569999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH-HHHHHHHHhh
Q 045105 486 EAYEFIKKI-P-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD-LARTRQKMKD 562 (601)
Q Consensus 486 ~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~l~~~~~ 562 (601)
+|..+|+++ . ...+...|+.+...+...|++++|++.++++.+.+|+++.++..++.++...|+.++ +.++++++.+
T Consensus 184 eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999988 2 234788899999999999999999999999999999999999999999999999976 5788898887
Q ss_pred cCC
Q 045105 563 RRM 565 (601)
Q Consensus 563 ~~~ 565 (601)
..+
T Consensus 264 ~~P 266 (291)
T 3mkr_A 264 AHR 266 (291)
T ss_dssp HCT
T ss_pred hCC
Confidence 763
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.5e-15 Score=143.39 Aligned_cols=262 Identities=9% Similarity=-0.057 Sum_probs=212.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcC
Q 045105 265 DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSS 344 (601)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 344 (601)
+...+..+...+...|++++|...|+ .+.+. .+.+...+..+...+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~----------~~~~~----------------------~~~~~~~~~~l~~~~~~ 67 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFE----------AVCQA----------------------APEREEAWRSLGLTQAE 67 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHH----------HHHHH----------------------CTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHH----------HHHHh----------------------CCCCHHHHHHHHHHHHH
Confidence 33455677788899999999999998 44321 12245667788889999
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHH--------------HH-
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAM--------------LT- 406 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l--------------l~- 406 (601)
.|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++.. .+...+..+ ..
T Consensus 68 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 68 NEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred cCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 999999999999998875 34677888899999999999999999988762 222333333 22
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHH
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 486 (601)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...... +.+...+..+...+...|++++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 3677899999999999999864 4467788999999999999999999997766553 3456788999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCHHH
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN------------NTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~ 552 (601)
|.+.++++ ...| +...+..+...+...|++++|.+.++++.+..|+ ++.++..++.++...|++++
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99999987 3334 6788999999999999999999999999999998 67899999999999999999
Q ss_pred HHHHHHHHh
Q 045105 553 LARTRQKMK 561 (601)
Q Consensus 553 A~~~l~~~~ 561 (601)
|..++++..
T Consensus 305 A~~~~~~~l 313 (327)
T 3cv0_A 305 VELTYAQNV 313 (327)
T ss_dssp HHHHTTCCS
T ss_pred HHHHHHHHH
Confidence 999987543
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=9e-14 Score=140.09 Aligned_cols=148 Identities=11% Similarity=-0.027 Sum_probs=77.3
Q ss_pred hHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH--hHHHHHH-HHhccCchHHHHHHH
Q 045105 383 LKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI--SFLSALS-ACVHAGSIKTGSEFF 456 (601)
Q Consensus 383 ~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~ 456 (601)
.+.|...++... +.+...+..+...|...|++++|+..|++.++....|... .+..+.. .....|++++|+..|
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345555555443 3455677888888899999999999999988864333321 2222222 234678899999988
Q ss_pred HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 457 DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
....+ +.|+....... ...+.+++++. ...| +..+|..+...|...|++++|++.++++++.+|.+|
T Consensus 396 ~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 396 IEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 66554 34443322222 22333344333 2234 677899999999999999999999999999998877
Q ss_pred chHHHHH
Q 045105 535 GNYVMLA 541 (601)
Q Consensus 535 ~~~~~l~ 541 (601)
.+...++
T Consensus 465 ~a~~~~G 471 (472)
T 4g1t_A 465 SASSWNG 471 (472)
T ss_dssp -------
T ss_pred cHhhcCC
Confidence 7665544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1.1e-14 Score=129.45 Aligned_cols=195 Identities=13% Similarity=0.046 Sum_probs=154.4
Q ss_pred CCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHH
Q 045105 364 DSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSAL 440 (601)
Q Consensus 364 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 440 (601)
++++..+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++.++.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4566777888888999999999999998765 3556788889999999999999999999999863 33456888888
Q ss_pred HHHhcc-----------CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 045105 441 SACVHA-----------GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSVMWGALLG 508 (601)
Q Consensus 441 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 508 (601)
.++... |++++|...++...+.. +-+...+..+..+|...|++++|+..|+++ ....+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 899999 99999999997766643 334668888999999999999999999887 22277888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
.+...|++++|...++++.+.+|+++..+..++.++...|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4e-14 Score=129.89 Aligned_cols=221 Identities=11% Similarity=0.031 Sum_probs=191.5
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--C----C----hhhH
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST--P----D----LVSQ 401 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~----~~~~ 401 (601)
...+..+...+...|++++|...+..+.+.. .+...+..+...+...|++++|...+++... | + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3457778888999999999999999999988 7888999999999999999999999998762 1 2 5788
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
..+...|...|++++|+..|++..+. .|+. ..+...|++++|...++...... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999984 5553 34567788999999997766543 33466788899999999
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 482 GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 482 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|++++|+..++++ ...| +..++..+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|.+.+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999987 2234 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC
Q 045105 560 MKDRR 564 (601)
Q Consensus 560 ~~~~~ 564 (601)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87655
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=4.2e-13 Score=122.61 Aligned_cols=198 Identities=10% Similarity=-0.005 Sum_probs=151.8
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3445566666777777777777777654 3455677777888888888888888888887753 33566777788888
Q ss_pred hccCchHHHHHHHHHHHhcCCCc-CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
...|++++|..+++.+...+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888886655533334 3456777788888888888888888876 2233 5677888888888899999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+.++++.+..|+++..+..++.++...|++++|.+.++++.+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999998888888888888899999999999999888877653
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.1e-12 Score=117.43 Aligned_cols=198 Identities=11% Similarity=0.018 Sum_probs=153.2
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (601)
++..+..+...+...|++++|...|+.+. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34555666677777777777777777654 3445677778888888888888888888888753 3456677888888
Q ss_pred Hhcc-CchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhH
Q 045105 443 CVHA-GSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 443 ~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 518 (601)
+... |++++|...++.+.+.+..|+ ...+..+..++...|++++|+..++++ ...| +...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 899999988866665323333 457777888888899999998888876 2234 57778888888889999999
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 519 GQIAADRLIELEP-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 519 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
|.+.++++.+..| +++..+..++.++...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999988 888888888888889999999999988887654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=3.9e-12 Score=117.58 Aligned_cols=235 Identities=9% Similarity=-0.061 Sum_probs=186.2
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCC--HhhHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPN--ARTLSSV 100 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l 100 (601)
...+......+...|++++|+..|+...+ ..+.+...|..+..++...|++++|++.+++..+.+..|+ ..+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34566677889999999999999999988 4556677899999999999999999999999988432222 2247888
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHH
Q 045105 101 LPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--K-NEVSCNTIIVGYCENGNVA 177 (601)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 177 (601)
...+...|++++|...++...+.. +.+..++..+..++...|++++|...|++... | +...+..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875 45667899999999999999999999998874 2 5556777773444556999
Q ss_pred HHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCCCh------hhHHHHHHHhcccCCHH
Q 045105 178 EARELFDQMEHLGVQRGIISWNSMISGYVDNSL---YDEAFSMFRDLLMRDGIEPTS------FTFGSVLIACADMNSLR 248 (601)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~ 248 (601)
+|.+.|++..... +.+...+..+...+...|+ +++|...+++......-.|+. ..|..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998764 3345667777888888888 888999998887643333442 45666777788889999
Q ss_pred HHHHHHHHHHHcC
Q 045105 249 KGKEIHALAIALG 261 (601)
Q Consensus 249 ~a~~~~~~~~~~~ 261 (601)
.|.+.++.+.+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999998888765
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=2.8e-13 Score=122.97 Aligned_cols=196 Identities=11% Similarity=0.110 Sum_probs=116.4
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3344445555555566666655555543 2344556666666667777777777777766642 33455666666677
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...|++++|...++...+.. +.+...+..+...+.+.|++++|+..++++ ... .+...+..+...+...|++++|.+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777775544433 234556666667777777777777777665 222 345666667777777777777777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.++++.+..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 7777777777777777777777777777777777777776654
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=4.1e-12 Score=117.49 Aligned_cols=224 Identities=13% Similarity=-0.022 Sum_probs=192.3
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCChHHHHHHHhcCC-CCChhhHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAK----CGSLKHARLAYKRIS-TPDLVSQNAML 405 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~ll 405 (601)
+...+..+...+...|++++|...+....+. .+...+..+...|.. .+++++|...|++.. ..+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4556677788888999999999999999883 355677788888999 999999999999876 34777888899
Q ss_pred HHHHH----cCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc----cCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 406 TAYAM----HGHGKEGIAHFRRILASGFRPDHISFLSALSACVH----AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 406 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 99999 999999999999999875 66778888888888 999999999997777765 45677788888
Q ss_pred hhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH---
Q 045105 478 LSR----AGELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY--- 546 (601)
Q Consensus 478 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 546 (601)
|.. .+++++|++.+++.-...+...+..+...|.. .+++++|.+.++++.+..| +..+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 888 99999999999987323456778888888988 9999999999999999865 7789999999999
Q ss_pred -cCCHHHHHHHHHHHhhcCC
Q 045105 547 -AGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 547 -~g~~~~A~~~l~~~~~~~~ 565 (601)
.|++++|.+.+++..+.|.
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHcCC
Confidence 9999999999999988874
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=4.1e-12 Score=126.28 Aligned_cols=257 Identities=12% Similarity=0.019 Sum_probs=116.7
Q ss_pred CCCCchhHHHHHhhCCC-CCccchHHHHHHHHhcCCh---HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC-----C
Q 045105 4 KCGSLDDAKKVFKMMPE-RDCVSWNSVVTACAANGLV---LEALECLERMSSLDNETPNLVSWSAVIGGFTQNG-----Y 74 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-----~ 74 (601)
+.|++++|.+.|+++.+ .++.++..|...|...|+. ++|+..|+...+ . +...+..|...+...+ +
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~---~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--T---SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--C---CHHHHHHHHHHHHhCCCCCCcC
Confidence 34667777777776654 3444555555556556666 677777766553 2 4455555555444443 5
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----HHHHHH
Q 045105 75 DEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD----MLSALK 150 (601)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----~~~a~~ 150 (601)
+++|.+.|++..+.|. |+ .+..|...|...+....+...++.+.+.....+......+...|...+. .+.+..
T Consensus 90 ~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 6677777777766542 22 4555555555544433333333333222111233444555555555553 334444
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhC----CChhHHHHHHHHHHH
Q 045105 151 IFSKFSIKNEVSCNTIIVGYCENG---NVAEARELFDQMEHLGVQRGIISWNSMISGYVDN----SLYDEAFSMFRDLLM 223 (601)
Q Consensus 151 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~ 223 (601)
+++.....+..++..+...|...| +.++|++.|+.....| .++...+..+...|... +++++|+.+|++..
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 444444445556666666666666 6666666666666655 33333334444444333 46666666666543
Q ss_pred cCCCCCChhhHHHHHHH-h--cccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 045105 224 RDGIEPTSFTFGSVLIA-C--ADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYC 277 (601)
Q Consensus 224 ~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (601)
. -+...+..+-.. + ...++.++|.+.|+...+.| +...+..|..+|.
T Consensus 245 -~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 245 -P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp -G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred -C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 1 122222222222 2 33556666666666555544 3333444444443
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.6e-12 Score=129.29 Aligned_cols=209 Identities=9% Similarity=-0.034 Sum_probs=133.6
Q ss_pred chhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhc----CChHHHHHHHhcCCCCChhhHHHHHHH-H--HHcCChhhHHH
Q 045105 347 TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKC----GSLKHARLAYKRISTPDLVSQNAMLTA-Y--AMHGHGKEGIA 419 (601)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~ 419 (601)
+.++|...+....+.|.. +...+..+...|... +++++|...|++..+.+...+..+... | ...+++++|+.
T Consensus 194 ~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 455555555555555432 333223444455443 577777777776664455566666665 3 45788899999
Q ss_pred HHHHHHHCCCCccHHhHHHHHHHHhccC-----chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCChHHHHHH
Q 045105 420 HFRRILASGFRPDHISFLSALSACVHAG-----SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGELGEAYEF 490 (601)
Q Consensus 420 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 490 (601)
+|++..+.| +...+..+...|. .| ++++|..+|+... +-+...+..|...|.. ..+.++|.+.
T Consensus 273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 999988876 4555555666665 44 8889999986644 3345566667777765 4489999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 491 IKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
|++.-..-+......|...|.. ..|.++|..+++++.+..+.+.......+......++..+|.++.+++++..
T Consensus 345 ~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 345 LLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 9887323344555556666653 4589999999999998865333322222222334567888888888887553
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=8.4e-13 Score=122.12 Aligned_cols=246 Identities=11% Similarity=-0.001 Sum_probs=146.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc
Q 045105 268 VGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLAT 347 (601)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 347 (601)
.+......+...|++++|...|+ ...+. . +.+...+..+..++...|+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~----------~~l~~--~--------------------p~~~~~~~~l~~~~~~~~~ 52 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFN----------KLEAK--K--------------------YNSPYIYNRRAVCYYELAK 52 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHH----------HHHHT--T--------------------CCCSTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH----------HHHHh--C--------------------CCcHHHHHHHHHHHHHHhh
Confidence 34455666777788888877777 33311 0 1122345566667777777
Q ss_pred hhhHHHHHHHHHHhCCCCc--hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDSD--VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFR 422 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (601)
+++|...+....+.+..++ ...+..+...+...|++++|...|++.. +.+...+..+...|...|++++|+..++
T Consensus 53 ~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 53 YDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7777777777776332121 2235666777777777777777777655 3445567777777777777777777777
Q ss_pred HHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCC---hHHHHHHHHhC----C
Q 045105 423 RILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE---LGEAYEFIKKI----P 495 (601)
Q Consensus 423 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~ 495 (601)
+..+.. +.+...+..+...+...+++++|...++...+.. +.+...+..+..++...|+ +++|...++++ .
T Consensus 133 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 133 KQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 776641 2233455555523333457777777775554432 2234555556666666666 66666666554 1
Q ss_pred CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 496 MAPDS------VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 496 ~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
..|+. .+|..+...|...|++++|.+.++++.+++|+++.+...+..+....
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 12331 35555666667777777777777777777777776666666555443
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1e-12 Score=120.33 Aligned_cols=235 Identities=11% Similarity=0.009 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCC
Q 045105 266 TFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSL 345 (601)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 345 (601)
...+..+...+...|++++|...|+ ...+. . .+...+..+..++...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~----------~a~~~---------------------~--~~~~~~~~~~~~~~~~ 51 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYN----------KAWEL---------------------H--KDITYLNNRAAAEYEK 51 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH----------HHHHH---------------------S--CCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH----------HHHHh---------------------h--ccHHHHHHHHHHHHHc
Confidence 3567788889999999999999998 44321 1 4456778888999999
Q ss_pred CchhhHHHHHHHHHHhCCC--Cc----hhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChhhH
Q 045105 346 ATMERGKQVHAYAIRCGYD--SD----VHIGTALVDMYAKCGSLKHARLAYKRIST--PDLVSQNAMLTAYAMHGHGKEG 417 (601)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a 417 (601)
|++++|...+....+.... ++ ..++..+...+...|++++|...|+++.. |+ ...+...|++++|
T Consensus 52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKE 124 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHH
Confidence 9999999999998875322 12 57888899999999999999999998773 44 2456777889999
Q ss_pred HHHHHHHHHCCCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 045105 418 IAHFRRILASGFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-P 495 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 495 (601)
...++++... .|+ ...+..+...+...|++++|...++...... +.+..++..+..+|.+.|++++|++.++++ .
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999985 444 4578888899999999999999997766654 345778899999999999999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 045105 496 MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELE------PNNTGNYVMLANL 543 (601)
Q Consensus 496 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 543 (601)
..| +...|..+...+...|++++|.+.++++.+.. |++..++..+..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 344 57788999999999999999999999999998 7666666665543
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.8e-12 Score=124.63 Aligned_cols=229 Identities=9% Similarity=0.014 Sum_probs=192.3
Q ss_pred HhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC-hHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 332 IYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGS-LKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 332 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
...|..+...+...|++++|...++.+++... -+...|+.+...+...|+ +++|+..|+++. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 34577777888899999999999999998763 367788888999999997 999999999887 4567889999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh-cCChHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR-AGELGE 486 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 486 (601)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++.+.+.. +-+...|+.+..+|.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999963 3456789999999999999999999997777654 3456789999999998 666578
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC--------C
Q 045105 487 A-----YEFIKKI-PMAP-DSVMWGALLGGCVSHG--NLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG--------R 549 (601)
Q Consensus 487 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 549 (601)
| ++.++++ ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4677665 4456 5778888888888888 689999999998 889999999999999999975 3
Q ss_pred -HHHHHHHHHHH-hhcC
Q 045105 550 -WSDLARTRQKM-KDRR 564 (601)
Q Consensus 550 -~~~A~~~l~~~-~~~~ 564 (601)
+++|.++++++ .+.+
T Consensus 333 ~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 333 ILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 59999999998 5554
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=5.6e-13 Score=120.96 Aligned_cols=216 Identities=14% Similarity=0.082 Sum_probs=162.7
Q ss_pred CCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 045105 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLT 406 (601)
Q Consensus 330 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~ 406 (601)
.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 445667778888999999999999999988754 3467788889999999999999999999876 456778889999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHH
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGE 486 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 486 (601)
.|...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999864 4466788889999999999999999997666543 3456788889999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
|++.++++ ...| +..++..+...|...|++++|.+.++++.+..|+++.++..+..+....|
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999887 2233 57788999999999999999999999999999998888887776654443
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=1.9e-12 Score=114.89 Aligned_cols=195 Identities=12% Similarity=-0.069 Sum_probs=109.9
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 045105 21 RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 21 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (601)
++...+..+...+.+.|++++|+..|+...+ ..|.+...|..+..++.+.|++++|+..+++..+.. +-+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4556677778888888888888888888877 456677888888888888888888888888887753 3345566677
Q ss_pred HHHHHhc-----------CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHH
Q 045105 101 LPACARL-----------QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KNEVSCNTII 167 (601)
Q Consensus 101 l~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li 167 (601)
...+... |++++|...++..++.. +.+...+..+..++...|++++|+..|++... .+...+..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 7777766 66666666666665543 22344455555555555555555555544321 2333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHH
Q 045105 168 VGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRD 220 (601)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 220 (601)
..+...|++++|...|++..... +.+...+..+...+...|++++|+..|++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44444455555444444444332 22333344444444444444444444443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=3.7e-12 Score=116.29 Aligned_cols=195 Identities=14% Similarity=-0.043 Sum_probs=93.7
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
..|..+...+...|++++|+..|+.+.+ ..+.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555555556666666666665555 233445555555556666666666666666555442 2234445555555
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMS-NPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a 179 (601)
+...|++++|...++.+.+.+..| +...+..+..++...|++++|...|++.. ..+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554421222 23344444444555555555555544433 11233344444444444444444
Q ss_pred HHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 180 RELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
...++++.... +.+...+..+...+...|++++|.+.++++.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444322 1223333444444444444444444444443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=2.8e-12 Score=118.80 Aligned_cols=219 Identities=11% Similarity=-0.094 Sum_probs=174.4
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTA 407 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~ 407 (601)
+..++..+...+...|++++|...+..+.+... .+...+..+...|...|++++|...|+++. +.+...+..+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence 355678888999999999999999999998753 367888899999999999999999999876 3467889999999
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
|...|++++|...++++.+. .|+.......+..+...|++++|...+....... +++...+ .++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHH
Confidence 99999999999999999985 4555544555556677899999999995555442 3444444 467777888888999
Q ss_pred HHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHH
Q 045105 488 YEFIKKI-PMAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTR 557 (601)
Q Consensus 488 ~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l 557 (601)
++.+++. ...|+ ...+..+...|...|++++|...++++.+..|++...+ +.++...|++++|.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9999877 32332 57788899999999999999999999999998765444 66788889999998876
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=3.3e-12 Score=110.22 Aligned_cols=167 Identities=12% Similarity=0.081 Sum_probs=141.7
Q ss_pred ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHH
Q 045105 397 DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (601)
+...|..+...|...|++++|+..|++.++.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45678889999999999999999999998853 3345688888899999999999999996655543 334557777788
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
.+...+++++|.+.+.+. ...| +...+..+...+...|++++|++.++++.+.+|+++.++..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999999877 2344 67788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 045105 555 RTRQKMKDRRM 565 (601)
Q Consensus 555 ~~l~~~~~~~~ 565 (601)
+.+++..+..+
T Consensus 162 ~~~~~al~~~p 172 (184)
T 3vtx_A 162 KYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHTTH
T ss_pred HHHHHHHhCCc
Confidence 99999887653
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=8.4e-13 Score=122.31 Aligned_cols=213 Identities=9% Similarity=-0.118 Sum_probs=109.0
Q ss_pred CCCCchhHHHHHhhCCCC-------CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChH
Q 045105 4 KCGSLDDAKKVFKMMPER-------DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDE 76 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~~~-------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~ 76 (601)
..|++++|++.|+++.+. +..+|..+...+...|++++|+..|+.+.+ ..+.+..+|..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHccCHH
Confidence 345666666666665541 233555566666666666666666666665 23445566666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 77 EAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
+|.+.|++..+.. +.+..++..+...+...|++++|...++.+.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6666666665542 2234555556666666666666666666665543 222222233333344455555555554332
Q ss_pred --CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 157 --IK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQR---GIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 157 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
.| +...+ .++..+...++.++|.+.+.......... +..++..+...+...|++++|...|++..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 22222 24444444444555555554443321100 12344444455555555555555555444
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=8.8e-12 Score=111.40 Aligned_cols=199 Identities=7% Similarity=-0.110 Sum_probs=137.0
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
+...|..+...+...|++++|+..|+.+.+ ..+.+...|..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALK--SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 345677777888888888888888888877 345567788888888888888888888888887653 34566777777
Q ss_pred HHHHhc-CCcchHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCH
Q 045105 102 PACARL-QKLSLGKEFHGYITRNGFMS-NPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNV 176 (601)
Q Consensus 102 ~~~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 176 (601)
..+... |++++|...++.+.+.+..| +...+..+..++...|++++|...|++.. ..+...+..+...+.+.|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 778888 88888888888877732222 24566677777777777777777776654 22455566666667777777
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 223 (601)
++|.+.+++........+...+..+...+...|+.+.+..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777776665543113444555555666666666666666666553
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=1.2e-09 Score=112.36 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=149.6
Q ss_pred CHhHHHHHHHHhcCCCchhhHH-HHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-------------C
Q 045105 331 DIYTVGIILSACSSLATMERGK-QVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-------------P 396 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~ 396 (601)
....|.....-+...|+.+.|. .+++..... ++.+...+...+....+.|+++.|..+|+++.. |
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4556666666667778888896 999998864 345667777888888899999999999987762 3
Q ss_pred C------------hhhHHHHHHHHHHcCChhhHHHHHHHHHHC-CCCccHHhHHHHHHHHhc-cCchHHHHHHHHHHHhc
Q 045105 397 D------------LVSQNAMLTAYAMHGHGKEGIAHFRRILAS-GFRPDHISFLSALSACVH-AGSIKTGSEFFDLMAYY 462 (601)
Q Consensus 397 ~------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 462 (601)
+ ...|...+....+.|..+.|..+|.+.++. + .+....|...+..-.+ .++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235777777778889999999999999886 2 1122233322222223 35589999999655554
Q ss_pred CCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 463 DVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
++-+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 3445667778888888999999999999987 2233 346788888888899999999999999999999654
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1.3e-12 Score=130.74 Aligned_cols=208 Identities=9% Similarity=-0.005 Sum_probs=175.9
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh-HHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSL-KHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRR 423 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 423 (601)
++.+...+...... .+.+...+..+...+...|++ ++|...|++.. +.+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555544432 234677888888999999999 99999998876 34577899999999999999999999999
Q ss_pred HHHCCCCccHHhHHHHHHHHhcc---------CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc--------CChHH
Q 045105 424 ILASGFRPDHISFLSALSACVHA---------GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA--------GELGE 486 (601)
Q Consensus 424 m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 486 (601)
..+. .|+...+..+...+... |++++|...++...+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9985 67778888899999999 99999999997766653 34567888999999988 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 487 AYEFIKKI-PMAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 487 A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
|++.|+++ ...| +...|..+...|...|++++|.+.++++.+++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999987 3345 6788999999999999999999999999999999999999999999999999999975443
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=1.2e-09 Score=112.36 Aligned_cols=452 Identities=9% Similarity=-0.006 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---HHHHHHHH
Q 045105 76 EEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD---MLSALKIF 152 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 152 (601)
.+.+..|++-...+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.++ .+.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444444444443 457777777777777777777777888877766 45566677777777667777 77777777
Q ss_pred hhcC--C---CCchhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-cCC-CCC-eeehHHHHHHHHh---------
Q 045105 153 SKFS--I---KNEVSCNTIIVGYCENGNV--------AEARELFDQMEH-LGV-QRG-IISWNSMISGYVD--------- 207 (601)
Q Consensus 153 ~~~~--~---~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~~-~~~~~~li~~~~~--------- 207 (601)
++.. . |++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 7665 2 5555666665555544443 223355655443 344 332 2455555544332
Q ss_pred CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 045105 208 NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRYQDLVAAQM 287 (601)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (601)
.++++.+..+|+..+. + |... +..+ ..-|....+. + +..+...++.- ...+++.|..
T Consensus 207 q~~~~~~R~iy~raL~---i-P~~~-~~~~-------------w~~Y~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~ 263 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLC---Q-PMDC-LESM-------------WQRYTQWEQD-V--NQLTARRHIGE--LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHTT---S-CCSS-HHHH-------------HHHHHHHHHH-H--CTTTHHHHHHH--HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh---C-ccHH-HHHH-------------HHHHHHHHHh-c--CcchHHHHHHH--hhHHHHHHHH
Confidence 2234455555555442 1 2111 0000 0011111100 0 00000011110 1123334444
Q ss_pred HhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCC----C---HhHHHHHHHHhcCCC-------chhhHHH
Q 045105 288 AFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTP----D---IYTVGIILSACSSLA-------TMERGKQ 353 (601)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p----~---~~~~~~li~~~~~~~-------~~~~a~~ 353 (601)
.+..++.... .+.+. ++....... ..++++ + ...|...+.---..+ ..+.+..
T Consensus 264 ~~~e~~~~~~---~l~r~-~p~~~~~~~---------~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~ 330 (679)
T 4e6h_A 264 LYQDWLNITK---GLKRN-LPITLNQAT---------ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTY 330 (679)
T ss_dssp HHHHHHHHTT---TCCCC-CCSSSTTCC---------TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH---hHhhc-cccccccch---------hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence 4443322211 11111 111000000 000000 0 011222222111111 1234556
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHH-HHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC
Q 045105 354 VHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHAR-LAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF 429 (601)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 429 (601)
+|+...... +....+|...+..+...|+.++|. .+|++.. +.+...|-..+...-+.|++++|..+|+++++...
T Consensus 331 ~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 331 VYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 677776653 447788888888888899999996 9998876 34555677788888899999999999999987410
Q ss_pred ---------Ccc------------HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc-CChHHH
Q 045105 430 ---------RPD------------HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA-GELGEA 487 (601)
Q Consensus 430 ---------~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A 487 (601)
.|+ ...|...+....+.|..+.|..+|....+.........|...+..-.+. ++.+.|
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence 132 2367777888888899999999996655541122334443333333344 458999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 488 YEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN---NTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 488 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.++|+.. ..-| +...|...+......|+.+.|..+++++.+..|+ ....+..++..-.+.|+.+.+.++.+++.+
T Consensus 490 r~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 490 CKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999877 2223 5667778888888899999999999999999873 345777788888889999999999999987
Q ss_pred cCCc
Q 045105 563 RRMH 566 (601)
Q Consensus 563 ~~~~ 566 (601)
.-+.
T Consensus 570 ~~P~ 573 (679)
T 4e6h_A 570 KFPE 573 (679)
T ss_dssp HSTT
T ss_pred hCCC
Confidence 7653
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=4.9e-11 Score=114.67 Aligned_cols=246 Identities=13% Similarity=0.029 Sum_probs=197.3
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC-hHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY-DEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
..+|+.+...+.+.|++++|+..|+.+.+ ..+-+...|+.+..++...|+ +++|+..|++..+.. +-+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34688888899999999999999999998 566788999999999999997 999999999999863 34667899999
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHh-cCCHH
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCE-NGNVA 177 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~-~g~~~ 177 (601)
.++...|++++|...|+.+++.. +-+...|..+..++.+.|++++|+..|++.. ..+...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999875 5577899999999999999999999999887 3367789999999999 66657
Q ss_pred HH-----HHHHHHHHhcCCCCCeeehHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccC-----
Q 045105 178 EA-----RELFDQMEHLGVQRGIISWNSMISGYVDNS--LYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMN----- 245 (601)
Q Consensus 178 ~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----- 245 (601)
+| ++.|++..... +-+...|+.+...+...| ++++|++.+.++ . ..+.+...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 58888887764 345678888888888888 689999999886 3 23345566777777777764
Q ss_pred ----CHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHH
Q 045105 246 ----SLRKGKEIHALA-IALGLQSDTFVGGALVEMYC 277 (601)
Q Consensus 246 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~ 277 (601)
.+++|.++++.+ .+.. +.....|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258899999888 4432 334455665555544
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.6e-10 Score=106.77 Aligned_cols=223 Identities=10% Similarity=-0.020 Sum_probs=177.7
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHHcCCCCCHhhH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQ----NGYDEEAIGMLFRMQAEGLEPNARTL 97 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 97 (601)
++.++..+...+...|++++|+..|+...+ +.+..++..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456777788888899999999999998877 2355778888888888 999999999999988875 66778
Q ss_pred HHHHHHHHh----cCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CchhHHHHHH
Q 045105 98 SSVLPACAR----LQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR----CGDMLSALKIFSKFSIK-NEVSCNTIIV 168 (601)
Q Consensus 98 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~ 168 (601)
..+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++.... +..++..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 888888888 899999999999988875 66788888888888 88999999888876643 5566777777
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 045105 169 GYCE----NGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD----NSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIA 240 (601)
Q Consensus 169 ~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 240 (601)
.+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++... .+ | ...+..+...
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~--~-~~a~~~l~~~ 227 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE--N-GGGCFNLGAM 227 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT--C-HHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-CC--C-HHHHHHHHHH
Confidence 7877 888999999888887764 34566777788888 8888999998888776 32 2 5556666666
Q ss_pred hcc----cCCHHHHHHHHHHHHHcC
Q 045105 241 CAD----MNSLRKGKEIHALAIALG 261 (601)
Q Consensus 241 ~~~----~~~~~~a~~~~~~~~~~~ 261 (601)
+.. .++.++|.+.++...+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666 788888888888887765
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=9.4e-12 Score=122.75 Aligned_cols=150 Identities=9% Similarity=-0.001 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCC-cC----chHHHHHHHHhhhcCC
Q 045105 414 GKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYTCMVDLLSRAGE 483 (601)
Q Consensus 414 ~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 483 (601)
+++|+..+++..+. +-.|. ..++..+...+...|++++|...++........ ++ ...+..+..+|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 56666665554331 11122 235666677777778888887777444332111 11 2266777788888888
Q ss_pred hHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCC
Q 045105 484 LGEAYEFIKKIP-M---AP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNYVMLANLFAYAGR 549 (601)
Q Consensus 484 ~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~ 549 (601)
+++|...+++.- . .. ...++..+...|...|++++|.+.++++.+..+.. ..++..++.+|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 888888877651 1 11 24567778888888999999999999888874432 3478889999999999
Q ss_pred HHHHHHHHHHHhhc
Q 045105 550 WSDLARTRQKMKDR 563 (601)
Q Consensus 550 ~~~A~~~l~~~~~~ 563 (601)
+++|.+.+++..+.
T Consensus 359 ~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 359 HERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=2.9e-11 Score=118.91 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=116.6
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHh----CCC-CchhHHhHHHHHHHhcCC--------------------hHHHHH
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRC----GYD-SDVHIGTALVDMYAKCGS--------------------LKHARL 388 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~ 388 (601)
++..+...+...|+++.|...+....+. +.. ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3455555666666666666666655432 111 113356666667777777 666666
Q ss_pred HHhcCCC-----C----ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-Ccc----HHhHHHHHHHHhccCchHHHHH
Q 045105 389 AYKRIST-----P----DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RPD----HISFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 389 ~~~~~~~-----~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~ 454 (601)
.+++... + ....+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6654431 1 123455566666667777777777666654210 111 1255556666666677777766
Q ss_pred HHHHHHhcC----CCcC-chHHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 045105 455 FFDLMAYYD----VKPS-LKHYTCMVDLLSRAGELGEAYEFIKKIP----MAPD----SVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 455 ~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
.++...... ..+. ..++..+...|...|++++|.+.+++.- ..++ ..++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 664433211 1110 3345556666666666666666665541 0111 3345555666666666666666
Q ss_pred HHHHHHhcCCCCC------chHHHHHHHHHHcCCHH
Q 045105 522 AADRLIELEPNNT------GNYVMLANLFAYAGRWS 551 (601)
Q Consensus 522 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~ 551 (601)
.++++.++.+... .++..++.++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 6666666665442 23344444444444444
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=2.1e-11 Score=116.38 Aligned_cols=151 Identities=13% Similarity=0.037 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCC-CcC----chHHHHHHHHhhhcCC
Q 045105 414 GKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDV-KPS----LKHYTCMVDLLSRAGE 483 (601)
Q Consensus 414 ~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 483 (601)
+++|...+++.... +..|. ...+..+...+...|++++|...++...+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 66666666554331 11121 23566677777888888888888754433211 111 2366777788888899
Q ss_pred hHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCC
Q 045105 484 LGEAYEFIKKIP----MAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNYVMLANLFAYAGR 549 (601)
Q Consensus 484 ~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~ 549 (601)
+++|.+.+++.- ..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 988888887651 1111 4567778888899999999999999998875432 3478889999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 045105 550 WSDLARTRQKMKDRR 564 (601)
Q Consensus 550 ~~~A~~~l~~~~~~~ 564 (601)
+++|.+.+++..+..
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999887654
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=6.2e-12 Score=123.78 Aligned_cols=297 Identities=11% Similarity=0.049 Sum_probs=187.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 045105 162 SCNTIIVGYCENGNVAEARELFDQMEHLGVQRG----IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237 (601)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 237 (601)
.+......+...|++++|...|++....+. .+ ..+|..+...+...|++++|...+++.....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 77 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 77 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH------------
Confidence 344455555666666666666666655421 11 1344555555556666666666655543210
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhH
Q 045105 238 LIACADMNSLRKGKEIHALAIALGLQ-SDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNA 316 (601)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (601)
...+.. ....++..+..+|...|++++|...++.......-. . +
T Consensus 78 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~------~------ 122 (406)
T 3sf4_A 78 --------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL---N------D------ 122 (406)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T------C------
T ss_pred --------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---c------c------
Confidence 000111 123455667777888888888887777322111100 0 0
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHhcCCCc--------------------hhhHHHHHHHHHHh----CCC-CchhHHh
Q 045105 317 MQLFSEMLSLDLTPDIYTVGIILSACSSLAT--------------------MERGKQVHAYAIRC----GYD-SDVHIGT 371 (601)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~ 371 (601)
......++..+...+...|+ ++.|...+....+. +.. ....++.
T Consensus 123 -----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 191 (406)
T 3sf4_A 123 -----------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFG 191 (406)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 00113356677777888888 99999998876643 211 1245677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHH
Q 045105 372 ALVDMYAKCGSLKHARLAYKRIST-----PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFL 437 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 437 (601)
.+...|...|++++|...+++..+ ++ ...+..+...|...|++++|...+++..+. +..+. ..++.
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 888899999999999999988762 22 237888889999999999999999998753 11111 34778
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhcCCC-cC----chHHHHHHHHhhhcCChHHHHHHHHhC-------CCCC-CHHHHH
Q 045105 438 SALSACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYTCMVDLLSRAGELGEAYEFIKKI-------PMAP-DSVMWG 504 (601)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~ 504 (601)
.+...+...|++++|...++........ .+ ..++..+..+|...|++++|.+.+++. +..+ ...++.
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 351 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARL 351 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 8889999999999999999655442111 11 457778889999999999999998876 1111 233445
Q ss_pred HHHHHHHhcCChh
Q 045105 505 ALLGGCVSHGNLE 517 (601)
Q Consensus 505 ~l~~~~~~~g~~~ 517 (601)
.+...+...|+..
T Consensus 352 ~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 352 NLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHhhHhH
Confidence 5555555555544
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2e-11 Score=105.22 Aligned_cols=166 Identities=13% Similarity=0.093 Sum_probs=138.6
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHH
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSA 442 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 442 (601)
++.+|..+...|.+.|++++|...|++.. +.+...+..+..+|.+.|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678888888888999999999988776 4566788889999999999999999999998863 3445677777788
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQ 520 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 520 (601)
+...++++.+...+....... +.+...+..+..+|.+.|++++|++.|++. ...| +..+|..+...|...|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 889999999999996655543 345678888999999999999999999887 3445 6778999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 045105 521 IAADRLIELEPNN 533 (601)
Q Consensus 521 ~~~~~~~~~~p~~ 533 (601)
+.++++++.+|++
T Consensus 162 ~~~~~al~~~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHhCCccC
Confidence 9999999999864
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.7e-11 Score=120.98 Aligned_cols=266 Identities=10% Similarity=0.008 Sum_probs=203.5
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHHHHc----CC-CCCHh
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNL----VSWSAVIGGFTQNGYDEEAIGMLFRMQAE----GL-EPNAR 95 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~ 95 (601)
.+..+...+...|++++|+..|+++.+. .+.+. ..|..+...|...|++++|.+.+++..+. +- .....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3445667888999999999999999885 23333 57889999999999999999999987653 11 22345
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHhc-----CCCchHHHHHHHHHHHhcCC-----------------HHHHHHHHh
Q 045105 96 TLSSVLPACARLQKLSLGKEFHGYITRNG-----FMSNPFVVNGLVDVYRRCGD-----------------MLSALKIFS 153 (601)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 153 (601)
++..+...+...|+++.|...++...+.. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 67788888999999999999999887642 12234577888899999999 999998887
Q ss_pred hcCC-------C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----eeehHHHHHHHHhCCChhHHHHHHH
Q 045105 154 KFSI-------K--NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ-RG----IISWNSMISGYVDNSLYDEAFSMFR 219 (601)
Q Consensus 154 ~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~ 219 (601)
+... + ...++..+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 7541 1 2346888889999999999999999998654211 11 2377888999999999999999998
Q ss_pred HHHHcCCCCCC----hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 220 DLLMRDGIEPT----SFTFGSVLIACADMNSLRKGKEIHALAIALGL-----QSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 220 ~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
+......-..+ ..++..+...+...|++++|...++....... .....++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 87652211112 45677778889999999999999998875421 1124577788999999999999999998
Q ss_pred hH
Q 045105 291 EI 292 (601)
Q Consensus 291 ~~ 292 (601)
..
T Consensus 368 ~a 369 (411)
T 4a1s_A 368 QH 369 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=2.9e-11 Score=104.27 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=110.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh
Q 045105 401 QNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR 480 (601)
Q Consensus 401 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 480 (601)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555432 2234455555556666666666666664444332 2334556666666777
Q ss_pred cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
.|++++|.+.++++ .. ..+...+..+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777665 11 23566777788888888999999999999999999888899999999999999999999998
Q ss_pred HHhhcCC
Q 045105 559 KMKDRRM 565 (601)
Q Consensus 559 ~~~~~~~ 565 (601)
+..+..+
T Consensus 169 ~~~~~~~ 175 (186)
T 3as5_A 169 KANELDE 175 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 8876653
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=7.5e-11 Score=114.98 Aligned_cols=225 Identities=8% Similarity=-0.047 Sum_probs=169.6
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHh----CCCC-chhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRC----GYDS-DVHIGTALVDMYAKCGSLKHARLAYKRIST-----PD-----LVSQN 402 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 402 (601)
....+...|+++.|...+....+. +-.+ ...++..+...|...|++++|...+++... ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677889999999999998764 2122 346778888999999999999998887651 22 24688
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc----CC-CcCchHHH
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY----DV-KPSLKHYT 472 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 472 (601)
.+...|...|++++|+..+++..+. +-.+. ..++..+...|...|++++|...++...+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999998753 11111 137888899999999999999999665552 33 33356788
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-C-----CC-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 473 CMVDLLSRAGELGEAYEFIKKIP-M-----AP-DSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~-~-----~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
.+...|.+.|++++|.+.+++.- . .| ....+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998761 1 22 22335667777888888 66666666665 223334568889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhc
Q 045105 543 LFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 543 ~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+|...|++++|.+.+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988644
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=2.7e-11 Score=126.06 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (601)
...|+.|...|.+.|++++|+..|++.++. .|+ ..++..+..++.+.|++++|+..|+...+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 457788888888889999999999888884 454 5688888888899999999999986655543 234668888889
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHH
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLA 554 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 554 (601)
+|.+.|++++|++.|++. .+.| +...|..+...|...|++++|++.++++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999877 4455 56788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 045105 555 RTRQKMKD 562 (601)
Q Consensus 555 ~~l~~~~~ 562 (601)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887754
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=119.56 Aligned_cols=233 Identities=13% Similarity=0.080 Sum_probs=168.1
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHh-------CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC--------
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRC-------GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-------- 395 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------- 395 (601)
+..++..+...+...|++++|..++..+.+. ..+.....+..+...|...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556788888999999999999999988874 3344567778888999999999999999887651
Q ss_pred ---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHC------CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc---
Q 045105 396 ---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS------GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY--- 462 (601)
Q Consensus 396 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 462 (601)
.....+..+...|...|++++|...+++..+. +-.|+ ...+..+...+...|++++|..+++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12356788888999999999999999998774 22343 346788888999999999999999665553
Q ss_pred ---CCCc-CchHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCChhHHHH
Q 045105 463 ---DVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKIP----------MAPD-------SVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 463 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-------~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
+..| ...++..+..+|...|++++|.+.++++- ..+. ...+..+...+...+.+..+..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 24577888999999999999999987761 1111 1122223333445667777888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 522 AADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.++.+....|..+.++..++.+|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888888899999999999999999999999988654
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.30 E-value=3.7e-11 Score=114.66 Aligned_cols=264 Identities=10% Similarity=0.020 Sum_probs=195.2
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHHHHHc----CCCC-CHhh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPN----LVSWSAVIGGFTQNGYDEEAIGMLFRMQAE----GLEP-NART 96 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 96 (601)
+......+...|++++|+..|+++.+. .+.+ ...|..+...+...|++++|.+.+++..+. +..| ...+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 444566788899999999999998885 2233 367888889999999999999998886543 2122 2456
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhcCC-Cc----hHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 045105 97 LSSVLPACARLQKLSLGKEFHGYITRNGFM-SN----PFVVNGLVDVYRRCGD--------------------MLSALKI 151 (601)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 151 (601)
+..+...+...|+++.|...++...+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777788888899999999998887754211 11 3377788888888899 8888888
Q ss_pred HhhcCC-----C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCeeehHHHHHHHHhCCChhHHHHH
Q 045105 152 FSKFSI-----K----NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ-----RGIISWNSMISGYVDNSLYDEAFSM 217 (601)
Q Consensus 152 ~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 217 (601)
+++... + ...++..+...+...|++++|.+.+++....... ....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876541 1 2346778888999999999999999887643111 1123677888899999999999999
Q ss_pred HHHHHHcCCCCCC----hhhHHHHHHHhcccCCHHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHhcCCHHHHHHH
Q 045105 218 FRDLLMRDGIEPT----SFTFGSVLIACADMNSLRKGKEIHALAIALGL-----QSDTFVGGALVEMYCRYQDLVAAQMA 288 (601)
Q Consensus 218 ~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (601)
+++......-.++ ..++..+...+...|++++|...++....... .....++..+..+|.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887652211122 44667777888999999999999988765421 11244677889999999999999999
Q ss_pred hhh
Q 045105 289 FDE 291 (601)
Q Consensus 289 ~~~ 291 (601)
++.
T Consensus 326 ~~~ 328 (338)
T 3ro2_A 326 AEK 328 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 983
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=7.2e-10 Score=108.01 Aligned_cols=156 Identities=14% Similarity=0.049 Sum_probs=80.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCeeehH
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSI-----K----NEVSCNTIIVGYCENGNVAEARELFDQMEHLGV------QRGIISWN 199 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~~~~~~ 199 (601)
....+...|++++|...|++... + ...++..+...+...|++++|...+++....-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44455667777777777766542 1 223566666777777777777777766653210 11124566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh----hhHHHHHHHhcccCCHHHHHHHHHHHHHc----CC-CCchhHHH
Q 045105 200 SMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS----FTFGSVLIACADMNSLRKGKEIHALAIAL----GL-QSDTFVGG 270 (601)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 270 (601)
.+...|...|++++|+..|++......-.++. .++..+...+...|+++.|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 66677777777777777776665411111111 23344444444455555555554444431 11 22233344
Q ss_pred HHHHHHHhcCCHHHHHHHhh
Q 045105 271 ALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~ 290 (601)
.+..+|.+.|++++|...++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 44444444444444444444
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=5.7e-10 Score=104.91 Aligned_cols=211 Identities=13% Similarity=0.016 Sum_probs=137.8
Q ss_pred hhHHHHHhhCCC---CCccchHHHHHHHH-------hcCCh-------HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh
Q 045105 9 DDAKKVFKMMPE---RDCVSWNSVVTACA-------ANGLV-------LEALECLERMSSLDNETPNLVSWSAVIGGFTQ 71 (601)
Q Consensus 9 ~~A~~~~~~~~~---~~~~~~~~ll~~~~-------~~~~~-------~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 71 (601)
++|...|+++.+ .++..|..++..+. +.|++ ++|..+|++..+. ..+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 577788888874 45567777777665 34775 8888888888872 134456688888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-h-hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH-hcCCHHHH
Q 045105 72 NGYDEEAIGMLFRMQAEGLEPNA-R-TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR-RCGDMLSA 148 (601)
Q Consensus 72 ~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~a 148 (601)
.|++++|.++|++..+. .|+. . .|..+...+.+.|+++.|..+|+...+.+ +.+...|........ ..|+.+.|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999888874 5543 2 67778888888888888888888887754 233444443333222 24677777
Q ss_pred HHHHhhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--CeeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 149 LKIFSKFS---IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLG-VQR--GIISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 149 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
..+|+... ..+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+++.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766554 2244556666666666666666666666666542 233 23355555566666666666666666655
Q ss_pred H
Q 045105 223 M 223 (601)
Q Consensus 223 ~ 223 (601)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=5.2e-11 Score=112.31 Aligned_cols=251 Identities=12% Similarity=0.043 Sum_probs=131.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcC
Q 045105 234 FGSVLIACADMNSLRKGKEIHALAIAL-------GLQSDTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDG 306 (601)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g 306 (601)
+..+...+...|+++.|..+++.+.+. ..+....++..+..+|...|++++|...++..-..
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------- 98 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI----------- 98 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 333334444444444444444444432 22233456677888888889998888888732111
Q ss_pred CCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHH
Q 045105 307 FEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHA 386 (601)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 386 (601)
.........+.....+..+...+...|++++|...+..+.+.... .
T Consensus 99 -------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---------------~------ 144 (311)
T 3nf1_A 99 -------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK---------------V------ 144 (311)
T ss_dssp -------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---------------H------
T ss_pred -------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---------------h------
Confidence 111100011112334555666666666666666666655442100 0
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHC------CCCccH-HhHHHHHHHHhccCchHHHHHHHHHH
Q 045105 387 RLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS------GFRPDH-ISFLSALSACVHAGSIKTGSEFFDLM 459 (601)
Q Consensus 387 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 459 (601)
+..-.......+..+...|...|++++|+.++++..+. +..|+. .++..+...+...|++++|...++..
T Consensus 145 ---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 145 ---LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00000011234555666667777777777777776653 223332 36667777777888888888777554
Q ss_pred Hhc-------CCCcCch-H------HHHHHHHhhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 460 AYY-------DVKPSLK-H------YTCMVDLLSRAGELGEAYEFIKKIP-MAP-DSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 460 ~~~-------~~~~~~~-~------~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
.+. ...+... . +..+...+...+.+.+|...++... ..| ...++..+...|...|++++|.+.+
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 432 1112111 1 1222233345556666666666663 233 4567888999999999999999999
Q ss_pred HHHHhcCCC
Q 045105 524 DRLIELEPN 532 (601)
Q Consensus 524 ~~~~~~~p~ 532 (601)
+++.++.|.
T Consensus 302 ~~al~l~~~ 310 (311)
T 3nf1_A 302 EAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 999998774
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=5e-10 Score=96.35 Aligned_cols=168 Identities=15% Similarity=0.045 Sum_probs=141.5
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556677888899999999999998873 456788889999999999999999999998863 44567888889999
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
...|++++|...++...... +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999997766553 446678888999999999999999999887 2233 67888899999999999999999
Q ss_pred HHHHHHhcCCCCCch
Q 045105 522 AADRLIELEPNNTGN 536 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~ 536 (601)
.++++.+..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999998876644
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=1.9e-09 Score=101.35 Aligned_cols=216 Identities=13% Similarity=-0.011 Sum_probs=146.5
Q ss_pred HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh-------cCCh-------HHHHHHHHHHHHcCCCC-CHhhHHHHHHHH
Q 045105 40 LEALECLERMSSLDNETPNLVSWSAVIGGFTQ-------NGYD-------EEAIGMLFRMQAEGLEP-NARTLSSVLPAC 104 (601)
Q Consensus 40 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 104 (601)
++|+.+|++... ..+.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..+...+
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 678889998887 456677888888877763 4775 7888888888763 234 445777888888
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCc-hH-HHHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHH-hcCCHHH
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSN-PF-VVNGLVDVYRRCGDMLSALKIFSKFSIK---NEVSCNTIIVGYC-ENGNVAE 178 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~-~~g~~~~ 178 (601)
...|+++.|..+|+.+++. .|+ .. +|..+...+.+.|++++|..+|++.... +...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888874 333 33 6777778888888888888888776532 2333332222211 2577777
Q ss_pred HHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHhcccCCHHHHHHHHHH
Q 045105 179 ARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT--SFTFGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
|..+|+...... +.+...|..++..+.+.|++++|..+|++........|+ ...|...+......|+.+.|..+++.
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877777776542 234566777777777777777777777777762223442 34556666666667777777777777
Q ss_pred HHHcC
Q 045105 257 AIALG 261 (601)
Q Consensus 257 ~~~~~ 261 (601)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66553
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=8.4e-11 Score=117.61 Aligned_cols=212 Identities=10% Similarity=-0.019 Sum_probs=136.8
Q ss_pred ChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 045105 38 LVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYD-EEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF 116 (601)
Q Consensus 38 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (601)
.+++++..++.... ..+.+...|..+...+...|++ ++|++.|++..+.. +-+...|..+...+...|++++|...
T Consensus 83 ~~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35566666666554 3444666666777777777777 77777777766542 22355666666777777777777777
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhc---------CCHHHHHHHHhhcC---CCCchhHHHHHHHHHhc--------CCH
Q 045105 117 HGYITRNGFMSNPFVVNGLVDVYRRC---------GDMLSALKIFSKFS---IKNEVSCNTIIVGYCEN--------GNV 176 (601)
Q Consensus 117 ~~~~~~~g~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~--------g~~ 176 (601)
|+...+.. |+...+..+..++... |++++|...|++.. ..+...|..+..++... |++
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 77776653 4456666666666666 77777777776654 23455666677777666 777
Q ss_pred HHHHHHHHHHHhcCCC--CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHhcccCCHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQ--RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-SFTFGSVLIACADMNSLRKGKEI 253 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 253 (601)
++|++.|++....... .+...|..+..+|...|++++|++.|++... ..|+ ...+..+...+...|++++|.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777665311 3556677777777777777777777777765 2233 34456666666667777777665
Q ss_pred HHHH
Q 045105 254 HALA 257 (601)
Q Consensus 254 ~~~~ 257 (601)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5544
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=3.2e-10 Score=101.54 Aligned_cols=189 Identities=10% Similarity=-0.065 Sum_probs=88.0
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---C-CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-HHhHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---T-PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-HISFLSALS 441 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 441 (601)
+..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+. .|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 3444444555555555555555555443 1 34444444555555555555555555555543 232 234444555
Q ss_pred HHhccCchHHHHHHHHHHHhcCCCcCc-------hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 045105 442 ACVHAGSIKTGSEFFDLMAYYDVKPSL-------KHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD---SVMWGALLGGC 510 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~ 510 (601)
++...|++++|...++...+.. +.+. ..|..+...+...|++++|++.++++ ...|+ ...|..+...|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5555555555555553333321 1112 22444444444555555555555444 22333 22333333333
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
... +...++++..+.+.++..+... .....|.+++|...+++..+..+
T Consensus 164 ~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 322 2233444444443332222221 22333445999999998887653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=7e-10 Score=99.25 Aligned_cols=205 Identities=11% Similarity=0.012 Sum_probs=158.6
Q ss_pred CCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHH
Q 045105 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLT 406 (601)
Q Consensus 330 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~ 406 (601)
.|+..+......+...|++++|...+....+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888889999999999999999999998765677777779999999999999999999876 345567888999
Q ss_pred HHHHcCChhhHHHHHHHHHHCCCCccH-------HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC---chHHHHHHH
Q 045105 407 AYAMHGHGKEGIAHFRRILASGFRPDH-------ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS---LKHYTCMVD 476 (601)
Q Consensus 407 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 476 (601)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++...+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999999853 2233 35777778889999999999999776654 443 557777778
Q ss_pred HhhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 477 LLSRAGELGEAYEFIKKIP-M-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
+|...|+. +++++. . ..+...+.... ....+.+++|...++++.+++|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88666543 233321 1 22344443333 33456789999999999999999988887777654
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=1.4e-09 Score=105.71 Aligned_cols=224 Identities=13% Similarity=-0.005 Sum_probs=164.7
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHhCC-CC----chhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CC-----hhhHH
Q 045105 338 ILSACSSLATMERGKQVHAYAIRCGY-DS----DVHIGTALVDMYAKCGSLKHARLAYKRIST-----PD-----LVSQN 402 (601)
Q Consensus 338 li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 402 (601)
....+...|+++.|...+....+... .+ ...++..+...|...|+++.|...+++... ++ ..+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999999876421 11 345677888899999999999888876641 22 34678
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHh----cCCCcCchHHHH
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAY----YDVKPSLKHYTC 473 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 473 (601)
.+...|...|++++|+..+++..+. +-.+. ..++..+..++...|++++|...++.... .+.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8899999999999999999988763 21111 24677888899999999999999965554 122333667888
Q ss_pred HHHHhhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI----PM--APD-SVMWGALLGGCVSHGN---LEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
+...|.+.|++++|...+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999876 11 222 3345555555667777 66666666652 1223344677889999
Q ss_pred HHHcCCHHHHHHHHHHHhh
Q 045105 544 FAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 544 ~~~~g~~~~A~~~l~~~~~ 562 (601)
|...|++++|.+.+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998754
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=2.8e-08 Score=96.33 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=38.7
Q ss_pred hhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----C-CchHHHHHHHHH
Q 045105 478 LSRAGELGEAYEFIKKIP-MAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN-----N-TGNYVMLANLFA 545 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~ 545 (601)
+...|++++|...+++.. ..|. ...+..+...+...|++++|.+.++++.+..+. + ...+..++.++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 445555555555555441 1111 112334444455555555555555555443221 0 124444455555
Q ss_pred HcCCHHHHHHHHHHHh
Q 045105 546 YAGRWSDLARTRQKMK 561 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~ 561 (601)
..|++++|...+++..
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5555555555555443
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=4e-08 Score=95.17 Aligned_cols=263 Identities=9% Similarity=-0.008 Sum_probs=135.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCe----eehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCh----hhHHHHHH
Q 045105 168 VGYCENGNVAEARELFDQMEHLGVQRGI----ISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTS----FTFGSVLI 239 (601)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~ 239 (601)
..+...|++++|...+++........+. .+++.+...+...|++++|...+++......-.++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444566666666666665543211111 134445556666677777777766655311111121 12334445
Q ss_pred HhcccCCHHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChh
Q 045105 240 ACADMNSLRKGKEIHALAIAL----GLQ--S-DTFVGGALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVY 312 (601)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (601)
.+...|+++.|...++..... +.. | ....+..+...+...|++++|...++. .......
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------al~~~~~---- 167 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS----------GIEVLSS---- 167 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------HHHHTTT----
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------HHHHhhc----
Confidence 566677777777776666543 211 2 234556677788889999999888882 2211000
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCc-hhHHh-----HHHHHHHhcCChHHH
Q 045105 313 TWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSD-VHIGT-----ALVDMYAKCGSLKHA 386 (601)
Q Consensus 313 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~a 386 (601)
.+......++..+...+...|++++|...++........++ ...+. ..+..+...|++++|
T Consensus 168 -------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 168 -------------YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp -------------SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 01011123455666677777888888888877765421111 11111 122335566777777
Q ss_pred HHHHhcCCCCCh-------hhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCccHH-hHHHHHHHHhccCchHHHHH
Q 045105 387 RLAYKRISTPDL-------VSQNAMLTAYAMHGHGKEGIAHFRRILAS----GFRPDHI-SFLSALSACVHAGSIKTGSE 454 (601)
Q Consensus 387 ~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 454 (601)
...++....+.. ..+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|..
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 777766653211 12344555566666666666666655432 1111111 33334444455555555555
Q ss_pred HHH
Q 045105 455 FFD 457 (601)
Q Consensus 455 ~~~ 457 (601)
.++
T Consensus 315 ~l~ 317 (373)
T 1hz4_A 315 VLL 317 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=2.8e-08 Score=96.39 Aligned_cols=122 Identities=12% Similarity=-0.056 Sum_probs=63.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-C----CeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC-----hhhHHHHH
Q 045105 169 GYCENGNVAEARELFDQMEHLGVQ-R----GIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPT-----SFTFGSVL 238 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~ll 238 (601)
.+...|++++|...|++....... + ...++..+...|...|+++.|+..+++......-.++ ..++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 344555555555555555432100 1 1234555556666666666666666555431111111 22344445
Q ss_pred HHhcccCCHHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 239 IACADMNSLRKGKEIHALAIAL----GLQ-SDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
..+...|+++.|.+.+....+. +.. ....++..+..+|...|++++|...++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555556666666555555432 111 113456667777888888888887777
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=9.6e-10 Score=101.86 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=152.2
Q ss_pred cCCCchhhHHHHHHHHHHh-------CCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-----------CChhhHHHH
Q 045105 343 SSLATMERGKQVHAYAIRC-------GYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-----------PDLVSQNAM 404 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l 404 (601)
...|+++.|...++...+. ..+....++..+...|...|++++|...++++.. ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888776653 2233566778888999999999999999887651 123467888
Q ss_pred HHHHHHcCChhhHHHHHHHHHHC------CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc------CCCc-CchH
Q 045105 405 LTAYAMHGHGKEGIAHFRRILAS------GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY------DVKP-SLKH 470 (601)
Q Consensus 405 l~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~ 470 (601)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...++..... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998764 11233 457888888999999999999999665553 1122 3457
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCC
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKIP----------MAPD-SVMWGALLGGCVSHGNL------EFGQIAADRLIELEPNN 533 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~p~~ 533 (601)
+..+..+|...|++++|...++++- ..+. ...|..+...+...+.. ..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888899999999999999987761 1232 23333333333333322 22222222222233445
Q ss_pred CchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 534 TGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.++..++.+|...|++++|.+.+++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678899999999999999999999987653
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=5.1e-09 Score=84.46 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=81.3
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 045105 437 LSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM-APDSVMWGALLGGCVSHG 514 (601)
Q Consensus 437 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 514 (601)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++ .. ..+...+..+...+...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444445555555555554333322 123344445555555556666666555554 11 224556667777778888
Q ss_pred ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 515 NLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++++|.+.++++.+..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888888888888888777888888888888888888888888877654
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=1.9e-08 Score=89.55 Aligned_cols=179 Identities=10% Similarity=0.032 Sum_probs=107.9
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH----hHHH
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIST--PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI----SFLS 438 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ 438 (601)
.+..+...+.+.|++++|...|+.+.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455566677777777777776652 32 134556666777777777777777777664 33321 2333
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH-HH-------------
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSV-MW------------- 503 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~------------- 503 (601)
+..++...+.. .+ ..|..+...+...|++++|+..|+++ ...|+.. .+
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 33333321100 00 00111111222344555555555554 2223211 11
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 504 ----GALLGGCVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 504 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
..+...|.+.|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 2445668889999999999999999999875 57899999999999999999999999887753
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=6.6e-09 Score=108.16 Aligned_cols=162 Identities=10% Similarity=-0.005 Sum_probs=128.2
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
..+|+.|...|.+.|++++|+..|++..+ ..+-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45788888888999999999999998887 445667888888899999999999999998888752 234667888888
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CchhHHHHHHHHHhcCCHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS--IK-NEVSCNTIIVGYCENGNVAEA 179 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a 179 (601)
++...|++++|.+.|++.++.. +-+...+..+..+|...|++++|++.|++.. .| +...+..+...+...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888888764 4456778888888888888888888887765 23 566777888888888888888
Q ss_pred HHHHHHHHh
Q 045105 180 RELFDQMEH 188 (601)
Q Consensus 180 ~~~~~~m~~ 188 (601)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776643
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=2.4e-09 Score=99.67 Aligned_cols=188 Identities=9% Similarity=0.015 Sum_probs=121.3
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC---Ccc--HHhHHHH
Q 045105 374 VDMYAKCGSLKHARLAYKRIST-------P--DLVSQNAMLTAYAMHGHGKEGIAHFRRILASGF---RPD--HISFLSA 439 (601)
Q Consensus 374 ~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l 439 (601)
...|...|++++|...|++... + ...+|+.+..+|...|++++|+..+++.++... .+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3356667777777777765541 1 134677788888888888888888887765310 111 2467777
Q ss_pred HHHHhcc-CchHHHHHHHHHHHhcCCCc-C----chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH--------HHHH
Q 045105 440 LSACVHA-GSIKTGSEFFDLMAYYDVKP-S----LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS--------VMWG 504 (601)
Q Consensus 440 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~--------~~~~ 504 (601)
...|... |++++|+..|+...+..... + ..++..+...|.+.|++++|+..+++. ...|+. ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7888885 88888888885544421111 1 345777888888889999998888876 222321 1456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--HcCCHHHHHHHHHHHh
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGN-----YVMLANLFA--YAGRWSDLARTRQKMK 561 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~l~~~~ 561 (601)
.+...+...|++++|...++++.+++|+.... +..++.++. ..+++++|...++++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 66677888899999999999999888865432 334555554 3566888877776543
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.01 E-value=5.5e-10 Score=92.20 Aligned_cols=141 Identities=11% Similarity=0.039 Sum_probs=101.8
Q ss_pred HHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 406 TAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
..+...|++++|+..++..... .|+. ..+..+...|.+.|++++|...|+...+.. +-+...|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3344556777777777776653 4433 356667777888888888888886655543 33466778888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI-AADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
++|+..|++. ...| +...|..+...|.+.|++++|.+ .++++.+++|+++.++.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4455 56778888888888888766554 4688999999888888888888887775
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=2.4e-08 Score=90.83 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=115.0
Q ss_pred HHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCc-cHHhHHHHHHHHhccCchHHHHHHHHHHHh
Q 045105 386 ARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRP-DHISFLSALSACVHAGSIKTGSEFFDLMAY 461 (601)
Q Consensus 386 a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 461 (601)
|...|++.. .++..++..+..++...|++++|++++.+.+..+-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555444 2444555566777777888888888888776654322 334666777788888888888888877665
Q ss_pred cCCCc-----CchHHHHHHHH--hhhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 045105 462 YDVKP-----SLKHYTCMVDL--LSRAG--ELGEAYEFIKKIP-MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIEL-- 529 (601)
Q Consensus 462 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 529 (601)
. .| +..+...|..+ ....| +..+|..+|+++. ..|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4 34 24444555555 22333 7888888888773 2344333344444677778888888888877665
Q ss_pred --------CCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 530 --------EPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 530 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 47777777777777777776 7778888777766
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=3.2e-09 Score=98.30 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=98.5
Q ss_pred CCCCCchhHHHHHhhCCC-------CC----ccchHHHHHHHHhcCChHHHHHHHHHhhhc------CCCCCChhhHHHH
Q 045105 3 GKCGSLDDAKKVFKMMPE-------RD----CVSWNSVVTACAANGLVLEALECLERMSSL------DNETPNLVSWSAV 65 (601)
Q Consensus 3 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~~~l 65 (601)
...|++++|++.|++..+ ++ ..++..+...+...|++++|+..|++..+. ...+....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345777777777777663 12 346777777888888888888888877653 1223345677778
Q ss_pred HHHHhhcCChHHHHHHHHHHHHc------CC-CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh------cCCC-chHH
Q 045105 66 IGGFTQNGYDEEAIGMLFRMQAE------GL-EPNARTLSSVLPACARLQKLSLGKEFHGYITRN------GFMS-NPFV 131 (601)
Q Consensus 66 i~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~ 131 (601)
...|...|++++|.+.+++..+. .- +....++..+...+...|++++|...++...+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888888888888888777653 11 122445666667777777777777777777654 1111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 132 VNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
+..+..++...|++++|...|++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.1e-08 Score=93.61 Aligned_cols=182 Identities=10% Similarity=0.006 Sum_probs=102.6
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC--C-C---hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCC-Ccc-HHhHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST--P-D---LVSQNAMLTAYAMHGHGKEGIAHFRRILASGF-RPD-HISFLS 438 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 438 (601)
...+-.+...+.+.|++++|...|+.+.. | + ...+..+..+|...|++++|+..|++.++... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455556666666666666665542 2 2 34455555666666666666666666665321 111 223444
Q ss_pred HHHHHhc--------cCchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045105 439 ALSACVH--------AGSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGG 509 (601)
Q Consensus 439 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 509 (601)
+..++.. .|++++|...|+...+.. |+ ......+.......+.. ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4555555 566666666664443322 22 11111111000000000 0113455667
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCC---chHHHHHHHHHHc----------CCHHHHHHHHHHHhhcCC
Q 045105 510 CVSHGNLEFGQIAADRLIELEPNNT---GNYVMLANLFAYA----------GRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~l~~~~~~~~ 565 (601)
|...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..+
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7888888888888888888888743 4777888888766 888888888888876653
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=1.5e-08 Score=94.25 Aligned_cols=202 Identities=8% Similarity=-0.022 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHh----CCCCc-hhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CC----hh
Q 045105 334 TVGIILSACSSLATMERGKQVHAYAIRC----GYDSD-VHIGTALVDMYAKCGSLKHARLAYKRIST-----PD----LV 399 (601)
Q Consensus 334 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~ 399 (601)
.|......+...|++++|...+....+. +-+++ ..+++.+..+|.+.|++++|...+++... .+ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556667788899999999999887754 32222 56788899999999999999999987762 22 34
Q ss_pred hHHHHHHHHHHc-CChhhHHHHHHHHHHCCCCcc-------HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCch--
Q 045105 400 SQNAMLTAYAMH-GHGKEGIAHFRRILASGFRPD-------HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLK-- 469 (601)
Q Consensus 400 ~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 469 (601)
+++.+...|... |++++|+..|++.++. .|+ ..++..+...+...|++++|...++............
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 788899999996 9999999999998773 221 3468888999999999999999997766654332221
Q ss_pred ----HHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCch
Q 045105 470 ----HYTCMVDLLSRAGELGEAYEFIKKI-PMAPDSV------MWGALLGGCV--SHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 470 ----~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
.+..+..++...|++++|+..+++. .+.|+.. .+..++.++. ..+++++|+..++++..++|.....
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 4667788899999999999999987 4445422 3444555554 3466888888888888887744333
Q ss_pred H
Q 045105 537 Y 537 (601)
Q Consensus 537 ~ 537 (601)
+
T Consensus 277 ~ 277 (292)
T 1qqe_A 277 L 277 (292)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.4e-09 Score=112.14 Aligned_cols=169 Identities=9% Similarity=-0.055 Sum_probs=100.6
Q ss_pred HhcCChHHHHHHHhcCC-----------CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc
Q 045105 378 AKCGSLKHARLAYKRIS-----------TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (601)
...|++++|...+++.. ..+...+..+...|...|++++|+..|++..+.. +-+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666665543 2344556666666666667777776666666642 22344566666666666
Q ss_pred CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 045105 447 GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAAD 524 (601)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 524 (601)
|++++|...|+...+.. +-+...+..+..+|.+.|++++ ++.|+++ ...| +...|..+...+...|++++|.+.++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777766665544432 2234556666666666666666 6666655 2233 44556666666666677777777777
Q ss_pred HHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 525 RLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 525 ~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
++.+++|++..++..++.++...|+
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 7776666666666666666655443
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=1.2e-08 Score=93.18 Aligned_cols=204 Identities=10% Similarity=0.008 Sum_probs=145.5
Q ss_pred CCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC--chhHHhHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhH
Q 045105 330 PDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDS--DVHIGTALVDMYAKCGSLKHARLAYKRIST--PD----LVSQ 401 (601)
Q Consensus 330 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~ 401 (601)
.+...+-.....+...|++++|...+..+.+..... ....+..+..+|.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 456677778888999999999999999998865321 156777888999999999999999998862 32 3456
Q ss_pred HHHHHHHHH--------cCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHH
Q 045105 402 NAMLTAYAM--------HGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYT 472 (601)
Q Consensus 402 ~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 472 (601)
..+..++.. .|++++|+..|++.++. .|+.. ....+.... .....+ ...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~-------~~~~~~-----------~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIR-------ELRAKL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHH-------HHHHHH-----------HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHH-------HHHHHH-----------HHHHH
Confidence 777888888 99999999999999985 45432 222211100 000011 11245
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCCc--
Q 045105 473 CMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSH----------GNLEFGQIAADRLIELEPNNTG-- 535 (601)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-- 535 (601)
.+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|...++++.+..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6778888999999999998877 22333 34566677777755 8899999999999999998764
Q ss_pred -hHHHHHHHHHHcCCHHHH
Q 045105 536 -NYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 536 -~~~~l~~~~~~~g~~~~A 553 (601)
+...+..++.+.|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 444556566665655543
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=9.7e-09 Score=95.17 Aligned_cols=174 Identities=7% Similarity=-0.047 Sum_probs=133.8
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCC
Q 045105 386 ARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVK 465 (601)
Q Consensus 386 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (601)
....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~ 181 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D 181 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h
Confidence 3344444444455666777788889999999999999998852 334567888888999999999999999665443 3
Q ss_pred cCchHHHHH-HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CchHHHH
Q 045105 466 PSLKHYTCM-VDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN--TGNYVML 540 (601)
Q Consensus 466 ~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l 540 (601)
|+....... ...+...++.++|+..+++. ...| +...+..+...+...|++++|.+.++++.+.+|++ ...+..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 443332222 23366778888888888776 3345 67788899999999999999999999999999987 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh
Q 045105 541 ANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 541 ~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
+.+|...|+.++|...+++...
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999998887543
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=3.4e-08 Score=79.51 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (601)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677788888899999999999988764 3456677788888888999999999996666543 345667788888999
Q ss_pred hcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 480 RAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
..|++++|.+.++++ ... .+...+..+...+...|++++|...++++.+..|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999877 223 35778888889999999999999999999998884
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=6.6e-09 Score=88.47 Aligned_cols=156 Identities=7% Similarity=0.029 Sum_probs=94.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH-hhhcC
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL-LSRAG 482 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 482 (601)
+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++..... .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 3444455555555555555554421 122334455555555555555555555433222 1222222111111 11212
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 483 ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN--TGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 483 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
...+|+..+++. ...| +...+..+...+...|++++|...++++.+.+|+. +..+..++.++...|+.++|...++
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 223456666655 3345 57788888889999999999999999999999864 5588999999999999999999988
Q ss_pred HHhh
Q 045105 559 KMKD 562 (601)
Q Consensus 559 ~~~~ 562 (601)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1.1e-07 Score=83.64 Aligned_cols=163 Identities=9% Similarity=-0.068 Sum_probs=130.4
Q ss_pred CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccC----chHHHHHHHHHHHhcCCCcCchH
Q 045105 395 TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAG----SIKTGSEFFDLMAYYDVKPSLKH 470 (601)
Q Consensus 395 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~ 470 (601)
..+...+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|+...+.+ +...
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a 87 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG 87 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3566677777888888899999999999988865 45566666677777 6 8999999997766654 4556
Q ss_pred HHHHHHHhhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 471 YTCMVDLLSR----AGELGEAYEFIKKIP-MAPD---SVMWGALLGGCVS----HGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 471 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
+..|...|.. .+++++|+++|++.- ..|+ +..+..|...|.. .+|+++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7777777876 889999999999873 3342 6788888888888 78999999999999998 66888999
Q ss_pred HHHHHHHHc-C-----CHHHHHHHHHHHhhcCC
Q 045105 539 MLANLFAYA-G-----RWSDLARTRQKMKDRRM 565 (601)
Q Consensus 539 ~l~~~~~~~-g-----~~~~A~~~l~~~~~~~~ 565 (601)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999988874
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=1.9e-08 Score=103.47 Aligned_cols=160 Identities=11% Similarity=0.009 Sum_probs=121.0
Q ss_pred cCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH
Q 045105 380 CGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF 456 (601)
Q Consensus 380 ~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 456 (601)
.|++++|...|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999988773 456788889999999999999999999999853 334678888899999999999999999
Q ss_pred HHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCC
Q 045105 457 DLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH---GNLEFGQIAADRLIELEP 531 (601)
Q Consensus 457 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p 531 (601)
+...+.. +.+...+..+..+|.+.|++++|++.+++. ...| +...+..+...+... |+.++|.+.++++.+.+|
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 7666643 344678888999999999999999999887 3344 567888888899999 999999999999999999
Q ss_pred CCCchHHHHH
Q 045105 532 NNTGNYVMLA 541 (601)
Q Consensus 532 ~~~~~~~~l~ 541 (601)
++...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8888877766
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=6e-09 Score=85.41 Aligned_cols=98 Identities=7% Similarity=-0.108 Sum_probs=85.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...+..+...+.+.|++++|+..|+++ ...| +...|..+...|...|++++|++.++++.+++|+++..+..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 446677778888999999999999887 3455 67888899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcCC
Q 045105 546 YAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~~~ 565 (601)
..|++++|...+++..+...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999887663
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=5e-08 Score=85.55 Aligned_cols=128 Identities=11% Similarity=0.070 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc
Q 045105 402 NAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA 481 (601)
Q Consensus 402 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 481 (601)
+.+..+|...|++++|+..|++.++.. +-+...+..+..++...|++++|...|+...+.. +.+...+..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 347888999999999999999998853 3356688888999999999999999997766653 33466788888887665
Q ss_pred CC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 482 GE--LGEAYEFIKKIPMAPDSV--MWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 482 g~--~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
|+ .+.+...+++.. .|++. .+.....++...|++++|+..+++++++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 53 455666676663 44433 3444555666789999999999999999994
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=5.2e-08 Score=80.21 Aligned_cols=139 Identities=4% Similarity=-0.123 Sum_probs=110.5
Q ss_pred CCCCCCchhHHHHHhhCCCCC---ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHH
Q 045105 2 YGKCGSLDDAKKVFKMMPERD---CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEA 78 (601)
Q Consensus 2 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 78 (601)
+...|++++|++.|++..+.+ ...+..+...|.+.|++++|++.|++..+ ..|-+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHH
Confidence 556789999999999988643 44666788899999999999999999988 4567888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHH-HHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 79 IGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEF-HGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+..|++..+.. +-+...+..+...+.+.|+.+++.+. ++...+.. +.++.+|......+...|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999988762 33567888888889999998776654 57777764 4456677777776666664
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.81 E-value=1.3e-07 Score=86.06 Aligned_cols=181 Identities=8% Similarity=0.014 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 351 GKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-----PDLVSQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
+...++...+.+ .++...+..+..++...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 34555556788899999999999999998742 345677788899999999999999999998
Q ss_pred HCCCCc-----cHHhHHHHHHHH--hccC--chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC-
Q 045105 426 ASGFRP-----DHISFLSALSAC--VHAG--SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP- 495 (601)
Q Consensus 426 ~~~~~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 495 (601)
+. .| +..+...+..++ ...| ++.+|..+|+.+.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 84 67 355666666663 3334 899999999776553 3443344455568999999999999998652
Q ss_pred C----------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHH
Q 045105 496 M----------AP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 496 ~----------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 538 (601)
. .| ++.+...++......|+ .|.+.++++.+..|++|.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 24 55566566666666676 889999999999998876554
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=2e-06 Score=85.82 Aligned_cols=200 Identities=7% Similarity=-0.101 Sum_probs=103.1
Q ss_pred chhHHHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC-hHHHHHHHHHHH
Q 045105 8 LDDAKKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY-DEEAIGMLFRMQ 86 (601)
Q Consensus 8 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~ 86 (601)
++.|..+|+.+.. .+-. |+++.+..+|+..... .|++..|...+....+.++ .+....+|+...
T Consensus 11 i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666665543 2211 7788888888887762 3688888888777776653 355666777666
Q ss_pred Hc-CCC-CCHhhHHHHHHHHH----hcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhc-------------CCHHH
Q 045105 87 AE-GLE-PNARTLSSVLPACA----RLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRC-------------GDMLS 147 (601)
Q Consensus 87 ~~-~~~-p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-------------~~~~~ 147 (601)
.. |.. ++...|...+..+. ..++.+.+..+|+..+......-...|......-... +.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 54 433 35566666665543 2356777888888887732211112222222111110 11122
Q ss_pred HHHHHhhcCC----CCchhHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHH
Q 045105 148 ALKIFSKFSI----KNEVSCNTIIVGYCENG--N-----VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFS 216 (601)
Q Consensus 148 a~~~~~~~~~----~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 216 (601)
|..+++.... .+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+++.|.+
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222110 12223333333222111 0 234556666666543 3345556666666667777777777
Q ss_pred HHHHHHH
Q 045105 217 MFRDLLM 223 (601)
Q Consensus 217 ~~~~~~~ 223 (601)
+|++...
T Consensus 235 i~erAi~ 241 (493)
T 2uy1_A 235 VVERGIE 241 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777665
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=4.4e-08 Score=85.90 Aligned_cols=159 Identities=11% Similarity=0.024 Sum_probs=116.8
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccH-HhHHH----------------HHHHHhccCchHHHHHHHHHHHhcCCC
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDH-ISFLS----------------ALSACVHAGSIKTGSEFFDLMAYYDVK 465 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (601)
.....+...|++++|+..|++.++. .|+. ..+.. +..++.+.|++++|...++...+.. +
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 3445566778888888888887774 4543 34555 7888999999999999997766653 3
Q ss_pred cCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGN--LEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 466 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
-+...+..+..+|...|++++|+..|+++ ...| +...|..+...|...|+ .+.+...++++....| ....+...+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 45678899999999999999999999987 4456 56778888888766553 4455566666554332 223566678
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++...|++++|...+++..+..+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 888899999999999999887764
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=6.3e-08 Score=101.35 Aligned_cols=167 Identities=10% Similarity=-0.085 Sum_probs=115.7
Q ss_pred CCCCchhHHHHHhhCC--------C---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhc
Q 045105 4 KCGSLDDAKKVFKMMP--------E---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQN 72 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~--------~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 72 (601)
..|++++|++.|+++. + .+...+..+..++.+.|++++|+..|++..+ ..+.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHc
Confidence 4577888888887765 2 3445677777778888888888888888777 3455677777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 045105 73 GYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIF 152 (601)
Q Consensus 73 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 152 (601)
|++++|++.|++..+.. +-+...+..+..++...|++++ .+.|+..++.. +.+...+..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877652 2245567777777778888888 88888877764 445567777777888888888888888
Q ss_pred hhcCCC---CchhHHHHHHHHHhcCC
Q 045105 153 SKFSIK---NEVSCNTIIVGYCENGN 175 (601)
Q Consensus 153 ~~~~~~---~~~~~~~li~~~~~~g~ 175 (601)
++...- +...+..+..++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 777633 23345555555544443
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=5.3e-08 Score=77.31 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 045105 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH 513 (601)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 513 (601)
+......+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444444444444444443333221 222334444444444444444444444443 1122 333444444444445
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 514 GNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
|++++|.+.++++++++|+++.++..+.
T Consensus 95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 5555555555555555554444444443
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=4e-08 Score=77.98 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=87.9
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+......|.+.|++++|++.|++. ...| +...|..+...|...|++++|++.++++++++|+++.++..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 46677888999999999999999987 3455 678899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcCC
Q 045105 547 AGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~~ 565 (601)
.|++++|.+.+++..+..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHCc
Confidence 9999999999999887653
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=1.4e-07 Score=83.07 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (601)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++...... +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45556677778888888888888763 5677788888888888888888888886555543 334567777888888
Q ss_pred hcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 480 RAGELGEAYEFIKKI-PMAP-D----------------SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
..|++++|++.+++. ...| + ...+..+...+...|++++|.+.++++.+..|++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888776 2122 1 2567777777888888888888888888888754
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=1.2e-07 Score=88.77 Aligned_cols=185 Identities=12% Similarity=-0.001 Sum_probs=132.8
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCC---CCcc--HH
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRIST-----PD----LVSQNAMLTAYAMHGHGKEGIAHFRRILASG---FRPD--HI 434 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~ 434 (601)
.|......|...|++++|...|.+... .+ ...|+.+...|...|++++|+..|++.++.- -.|. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344456678888999999888876651 11 3478888899999999999999999876531 1222 24
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCc-----CchHHHHHHHHhhhcCChHHHHHHHHhCC-C---CCC----HH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKP-----SLKHYTCMVDLLSRAGELGEAYEFIKKIP-M---APD----SV 501 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~ 501 (601)
++..+...|.. |++++|+..++......... ...++..+...|.+.|++++|+..+++.- . .++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67788888888 99999999996544421111 14577888999999999999999998771 1 111 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch-----HHHHHHHHHHcCCHHHHHHH
Q 045105 502 MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN-----YVMLANLFAYAGRWSDLART 556 (601)
Q Consensus 502 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 556 (601)
.+..+...+...|++++|...++++. ..|..... ...++.++ ..|+.+.+.++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 55666667778899999999999999 98875433 33455544 67887777664
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.1e-07 Score=97.73 Aligned_cols=146 Identities=12% Similarity=-0.038 Sum_probs=79.7
Q ss_pred CchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHH
Q 045105 346 ATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFR 422 (601)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 422 (601)
|++++|...++...+.. +.+...+..+...+...|++++|...|++.. +.+...+..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666666666665443 2245556666666667777777777776654 2344566666666777777777777777
Q ss_pred HHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc---CChHHHHHHHHhC
Q 045105 423 RILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA---GELGEAYEFIKKI 494 (601)
Q Consensus 423 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 494 (601)
+..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+..++... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 766642 2234566666666777777777777775544432 22345566666666666 6777777666655
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=2.4e-08 Score=81.94 Aligned_cols=98 Identities=9% Similarity=0.023 Sum_probs=75.3
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...+..+...+.+.|++++|+..|+++ ...| +...|..+...|...|++++|.+.++++.+++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445566667777888888888887776 2334 66677777778888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHhhcCC
Q 045105 546 YAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~~~ 565 (601)
..|++++|.+.+++..+..+
T Consensus 101 ~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 88888888888887766543
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=4.4e-08 Score=90.37 Aligned_cols=192 Identities=10% Similarity=-0.037 Sum_probs=126.2
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHH
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSAC 443 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 443 (601)
...+..+...+.+.|++++|...|++.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455566677777788888888877665 3466777888888888888999988888888752 33456777888888
Q ss_pred hccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045105 444 VHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAA 523 (601)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 523 (601)
...|++++|...++...+... -+...+...+....+..+...... ........+......+ ..+ ..|++++|.+.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEEC 158 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHH
Confidence 889999999988865544321 111112222222222221111111 2222223344433333 333 368999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHc-CCHHHHHHHHHHHhhc
Q 045105 524 DRLIELEPNNTGNYVMLANLFAYA-GRWSDLARTRQKMKDR 563 (601)
Q Consensus 524 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~ 563 (601)
+++.+.+|++......+...+.+. +++++|.++|++..+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999998877777787777776 7899999999988654
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=7.8e-07 Score=82.67 Aligned_cols=159 Identities=9% Similarity=0.009 Sum_probs=119.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCC-CCccHH----hHHHHHHHHhccCchHHHHHHHHHHHhcCCC-cC----chHHH
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASG-FRPDHI----SFLSALSACVHAGSIKTGSEFFDLMAYYDVK-PS----LKHYT 472 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 472 (601)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++........ ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988743 123321 2334666677788999999999666653222 22 22688
Q ss_pred HHHHHhhhcCChHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchH
Q 045105 473 CMVDLLSRAGELGEAYEFIKKIP-------MA-P-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNY 537 (601)
Q Consensus 473 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 537 (601)
.+..+|...|++++|+..++++- .. + ...++..+...|...|++++|.+.++++.+..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999887761 11 2 13477888889999999999999999999875432 5688
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHh
Q 045105 538 VMLANLFAYAGR-WSDLARTRQKMK 561 (601)
Q Consensus 538 ~~l~~~~~~~g~-~~~A~~~l~~~~ 561 (601)
..++.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999988775
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=3.1e-07 Score=85.02 Aligned_cols=140 Identities=10% Similarity=-0.021 Sum_probs=73.9
Q ss_pred HHHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCC
Q 045105 12 KKVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLE 91 (601)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 91 (601)
.+.+......+...+..+...+.+.|++++|...|+...+ ..|.+...+..+...+...|++++|...+++.... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h
Confidence 3334443333444455555666666666666666666665 33445566666666666666666666666666543 3
Q ss_pred CCHhhHHHHH-HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 92 PNARTLSSVL-PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 92 p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
|+........ ..+...++.+.|...++...+.. +.+...+..+..++...|++++|...|.++.
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333222222 12344455555666565555543 3344455555555555555555555554443
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=3.4e-07 Score=77.75 Aligned_cols=156 Identities=13% Similarity=-0.028 Sum_probs=94.6
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA- 103 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~- 103 (601)
.+..+...+.+.|++++|+..|+...+ ..|.+...+..+..++...|++++|+..+++..+. .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH
Confidence 455667788889999999999999877 45667788899999999999999999999988765 3344333222111
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC---chhHHHHHHHHHhcCCHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSI--KN---EVSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~ 178 (601)
+...+....+...++...+.. +.+...+..+..++...|++++|...|++... |+ ...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112223334566666666543 23455555566666666666666655555432 11 2234444444444444444
Q ss_pred HHHHHHH
Q 045105 179 ARELFDQ 185 (601)
Q Consensus 179 a~~~~~~ 185 (601)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=4.1e-06 Score=77.11 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=163.8
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC--ChHHHHHHHhcCC---CCChhhHHHHHHHH----HHc---C
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG--SLKHARLAYKRIS---TPDLVSQNAMLTAY----AMH---G 412 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~---~~~~~~~~~ll~~~----~~~---~ 412 (601)
....++|....+.++..+.. +...++.--..+...| +++++..+++.+. +.+...|+.-...+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 34446899999988887633 4455565566667777 9999999999887 34556676655555 455 7
Q ss_pred ChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH--HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCC------h
Q 045105 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK--TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE------L 484 (601)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 484 (601)
++++++.+++++.+.. +-|..+|..-.-.+.+.|.++ +++..++.+.+.. +-|...|+.-...+.+.|+ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8999999999999863 446667777777777788888 9999997777655 3455677766666666666 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcC---CCCCchHHHHHHHHHHcCCHHHHHHHHH
Q 045105 485 GEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGN-LEFGQIAADRLIELE---PNNTGNYVMLANLFAYAGRWSDLARTRQ 558 (601)
Q Consensus 485 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~l~ 558 (601)
+++++.++++ ...| |...|+.+...+.+.|+ .+......+++.+++ |.++.++..++.+|.+.|+.++|.+.++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888776 3455 78889888888888887 444667888888776 7788999999999999999999999999
Q ss_pred HHhh
Q 045105 559 KMKD 562 (601)
Q Consensus 559 ~~~~ 562 (601)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=6.8e-07 Score=83.11 Aligned_cols=162 Identities=8% Similarity=-0.063 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc-H----HhHHHHHHHHhccCchHHHHHHHHHHHhcCC---CcC--ch
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD-H----ISFLSALSACVHAGSIKTGSEFFDLMAYYDV---KPS--LK 469 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 469 (601)
.+...+..+...|++++|...+++..+...... . ..+..+...+...|++++|...++....... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778888999999998888877532211 1 1233455667788899999999865544221 111 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------CC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKIP----MAPD-----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPN------NT 534 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 534 (601)
+++.+...|...|++++|+..++++- ..|+ ..++..+...|...|++++|.+.++++.+..++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888899999999999999887751 1222 257888888999999999999999999887432 14
Q ss_pred chHHHHHHHHHHcCCHHHH-HHHHHHHh
Q 045105 535 GNYVMLANLFAYAGRWSDL-ARTRQKMK 561 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A-~~~l~~~~ 561 (601)
.++..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77677654
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.65 E-value=1.5e-05 Score=79.38 Aligned_cols=201 Identities=9% Similarity=0.009 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC-CChh-hHHHHHHHHHHcCChhhHHHHHHHHH
Q 045105 348 MERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST-PDLV-SQNAMLTAYAMHGHGKEGIAHFRRIL 425 (601)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 425 (601)
.+.+..+++.+.... +.++.+|...+..+.+.|+++.|..++++... |... .|. .|....+.++. ++.+.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHH
Confidence 345677888888754 45678888888888999999999999986652 3222 222 23332222222 33333
Q ss_pred HCC---------CCc---cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh-cCChHHHHHHHH
Q 045105 426 ASG---------FRP---DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR-AGELGEAYEFIK 492 (601)
Q Consensus 426 ~~~---------~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 492 (601)
+.- ..+ ....|...+....+.+..+.|..+|... .. ...+...|......-.. .++.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 211 011 1235666677777788899999999765 21 12233444332222222 336999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 493 KI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 493 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.. ..-| ++..|...+......|+.+.|..+++++ +.....+..++..-...|+.+.+..+++++.+
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 76 1123 3445666777778889999999999997 33556777777777788999999998888763
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=6.2e-07 Score=79.62 Aligned_cols=185 Identities=10% Similarity=-0.012 Sum_probs=126.4
Q ss_pred CHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCC--chhHHhHHHHHHHhcCChHHHHHHHhcCC--CCChh----hHH
Q 045105 331 DIYTVGIILSACSSLATMERGKQVHAYAIRCGYDS--DVHIGTALVDMYAKCGSLKHARLAYKRIS--TPDLV----SQN 402 (601)
Q Consensus 331 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~----~~~ 402 (601)
+...+-.+...+...|++++|...++.+.+..... ....+..+..+|.+.|++++|...|+++. .|+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455566778889999999999999999865322 23567778899999999999999999876 23322 344
Q ss_pred HHHHHHHH------------------cCChhhHHHHHHHHHHCCCCccHH-hHHHHHHHHhccCchHHHHHHHHHHHhcC
Q 045105 403 AMLTAYAM------------------HGHGKEGIAHFRRILASGFRPDHI-SFLSALSACVHAGSIKTGSEFFDLMAYYD 463 (601)
Q Consensus 403 ~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 463 (601)
.+..++.. .|++++|+..|+++++. .|+.. ....... . ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHH---
Confidence 55555554 45677777777777764 34432 2211110 0 00000000
Q ss_pred CCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc
Q 045105 464 VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS----VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG 535 (601)
Q Consensus 464 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 535 (601)
.....+...|.+.|++++|+..|+++ ...|+. ..+..+..++.+.|++++|.+.++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01134567888999999999999887 233432 46778889999999999999999999999887654
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=8.8e-07 Score=77.85 Aligned_cols=129 Identities=10% Similarity=-0.008 Sum_probs=77.6
Q ss_pred hHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 371 TALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
..+...+...|++++|...|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556666677777777766666666666666666666777777777776666642 334456666666666667777
Q ss_pred HHHHHHHHHHhcCCC--------------c-CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH
Q 045105 451 TGSEFFDLMAYYDVK--------------P-SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPDS 500 (601)
Q Consensus 451 ~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 500 (601)
+|...++...+.... | ....+..+..+|.+.|++++|.+.+++. ...|+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 777666544442211 0 1145556666666667777776666665 334543
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=1.3e-07 Score=77.08 Aligned_cols=95 Identities=12% Similarity=-0.027 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.+..+...+.+.|++++|+..|+++ ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4444556666777777777777665 2234 5666677777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhhcC
Q 045105 548 GRWSDLARTRQKMKDRR 564 (601)
Q Consensus 548 g~~~~A~~~l~~~~~~~ 564 (601)
|++++|.+.+++..+..
T Consensus 100 g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 100 GDLDGAESGFYSARALA 116 (142)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 77777777777766554
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=2.3e-07 Score=87.98 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=82.0
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|.+.++++.+++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357788889999999999999999887 3344 67888899999999999999999999999999999999999999999
Q ss_pred HcCCHHHH-HHHHHHHh
Q 045105 546 YAGRWSDL-ARTRQKMK 561 (601)
Q Consensus 546 ~~g~~~~A-~~~l~~~~ 561 (601)
..|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44566663
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=6.1e-07 Score=75.15 Aligned_cols=127 Identities=6% Similarity=0.043 Sum_probs=95.3
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVS 512 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 512 (601)
.+..+...+...|++++|...++...... +.+...+..+..++...|++++|++.+++. ...| +...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45555666667777777777775544432 234566777777788888888888887766 2234 56778888888999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCchHHHHHH--HHHHcCCHHHHHHHHHHHhh
Q 045105 513 HGNLEFGQIAADRLIELEPNNTGNYVMLAN--LFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~l~~~~~ 562 (601)
.|++++|.+.++++.+..|.++..+..+.. .+...|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988887755444 48889999999999887643
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.62 E-value=2.7e-07 Score=71.29 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=87.1
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCchHHHHHH
Q 045105 467 SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN--NTGNYVMLAN 542 (601)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 542 (601)
+...+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|.+.++++.+..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556778888888999999999998876 2233 6778888888999999999999999999999999 8999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHhhcCCcc
Q 045105 543 LFAYA-GRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 543 ~~~~~-g~~~~A~~~l~~~~~~~~~~ 567 (601)
++... |++++|.+.+++..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999998877544
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=1.8e-07 Score=79.53 Aligned_cols=122 Identities=6% Similarity=0.064 Sum_probs=52.8
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH-hhhcCCh--HH
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL-LSRAGEL--GE 486 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 486 (601)
..|++++|+..+++..+.. +.+...+..+...+...|++++|...++...... +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555555432 2233445555555555555555555553333321 1123334444444 3444444 44
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 045105 487 AYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN 533 (601)
Q Consensus 487 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 533 (601)
|+..++++ ...| +...+..+...+...|++++|...++++.+..|++
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 54444443 1122 23344444444444455555555555555544443
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=6.6e-07 Score=70.59 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=79.4
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PM-APDSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 511 (601)
..+..+...+...|++++|...++.+.... +.+...+..+...+.+.|++++|...++++ .. ..+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 455556666666777777777765544432 234456666677777777777777777665 22 235667777888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
..|++++|...++++.+..|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888887776654
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.59 E-value=1.3e-07 Score=74.50 Aligned_cols=96 Identities=13% Similarity=0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.+..+...+.+.|++++|+..++++ ...| +...|..+...+...|++++|+..++++.+++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4555677888999999999999887 3355 6778888889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 045105 548 GRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 548 g~~~~A~~~l~~~~~~~~ 565 (601)
|++++|...+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887653
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=6.7e-07 Score=71.58 Aligned_cols=115 Identities=7% Similarity=0.007 Sum_probs=78.7
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 511 (601)
..+..+...+...|++++|...++...... +.+...+..+..+|...|++++|++.++++ ...| +...+..+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455556666666666666666665544332 224456666666677777777777777665 2223 5667777777788
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGR 549 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 549 (601)
..|++++|.+.++++.+..|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888877664
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=6.5e-07 Score=73.21 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=87.4
Q ss_pred CCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 045105 429 FRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGA 505 (601)
Q Consensus 429 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 505 (601)
+.|+. ..+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|+++ ...| ++..|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45654 367778888999999999999997766653 445778889999999999999999999887 3455 5778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+..+|...|++++|.+.++++.++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999998543
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.2e-07 Score=73.85 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=75.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+..+...+.+.|++++|+..|++. ...| +...|..+...+...|++++|+..++++.+.+|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556667777888888888887766 2334 567777788888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 888888888888776554
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=5.8e-07 Score=80.69 Aligned_cols=184 Identities=7% Similarity=-0.104 Sum_probs=124.8
Q ss_pred hcCChHHHHHHHhcCC---CCChhhHHHH-------HHHHHHcCChhhHHHHHHHHHHCCCCccH---------------
Q 045105 379 KCGSLKHARLAYKRIS---TPDLVSQNAM-------LTAYAMHGHGKEGIAHFRRILASGFRPDH--------------- 433 (601)
Q Consensus 379 ~~g~~~~a~~~~~~~~---~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------- 433 (601)
..++...|.+.|.++. +.....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4567777777777665 2334566666 4555555556666665555544 22221
Q ss_pred -------HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HH
Q 045105 434 -------ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDS----VM 502 (601)
Q Consensus 434 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 502 (601)
.....+...+...|++++|.+.|..+...+ |+......+...+.+.|++++|+..|+.....|+. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 122335567778889999999886644433 33325555666788899999999999876433332 35
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC--CC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIELE--PN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMH 566 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~ 566 (601)
+..+..++...|++++|++.|+++.+-. |. .+......+.++.+.|+.++|...|+++.+..+.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 6777788888999999999999887543 43 3457788888999999999999999999887754
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=5.2e-07 Score=71.92 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=88.5
Q ss_pred HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 045105 433 HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGC 510 (601)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 510 (601)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|++.+++. ...| +...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456666677777777777777775544432 334566777777788888888888887766 2233 566778888888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCH
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRW 550 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (601)
...|++++|.+.++++.+..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999999998888999999998888875
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.52 E-value=4.7e-07 Score=84.77 Aligned_cols=195 Identities=6% Similarity=-0.020 Sum_probs=143.8
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
.|++++|..+++...+.... + .+...+++++|...|+. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 46677777777776654211 1 11115788888777654 466788999999999999987
Q ss_pred HHC----CCCcc-HHhHHHHHHHHhccCchHHHHHHHHHHHhc----CCCc-CchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 425 LAS----GFRPD-HISFLSALSACVHAGSIKTGSEFFDLMAYY----DVKP-SLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 425 ~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
.+. +-.+. ..+|..+...|...|++++|...++..... |-.. ...++..+..+|.. |++++|+..+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 21111 247888889999999999999999554432 2111 13567788888988 9999999999876
Q ss_pred -CCC-----C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------chHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 495 -PMA-----P--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT------GNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 495 -~~~-----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
.+. + ...++..+...|...|++++|++.++++.++.|.+. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 1 145778888999999999999999999999866543 26677888888999999999999998
Q ss_pred h
Q 045105 561 K 561 (601)
Q Consensus 561 ~ 561 (601)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 8
No 136
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.52 E-value=2.7e-06 Score=74.59 Aligned_cols=175 Identities=9% Similarity=-0.060 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCChhhHHHHHHHHHHcC----ChhhHHHHHHHH
Q 045105 350 RGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVSQNAMLTAYAMHG----HGKEGIAHFRRI 424 (601)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~m 424 (601)
+|...|....+.| ++..+..+...|...+++++|...|++.. ..+...+..|...|.. + ++++|+.+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3555666666654 56667777888888899999999998776 4566777777777777 6 899999999999
Q ss_pred HHCCCCccHHhHHHHHHHHhc----cCchHHHHHHHHHHHhcCCC-cCchHHHHHHHHhhh----cCChHHHHHHHHhC-
Q 045105 425 LASGFRPDHISFLSALSACVH----AGSIKTGSEFFDLMAYYDVK-PSLKHYTCMVDLLSR----AGELGEAYEFIKKI- 494 (601)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 494 (601)
.+.| +...+..|...|.. .+++++|..+|+...+.+.. .++..+..|...|.. .+++++|+..|++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8865 45566777777776 78999999999776665532 125677788888887 78999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCC
Q 045105 495 PMAPDSVMWGALLGGCVSH-G-----NLEFGQIAADRLIELEP 531 (601)
Q Consensus 495 ~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 531 (601)
....+...+..|...|... | |+++|...++++.+...
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3224566677777777653 3 89999999999998854
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=4e-07 Score=76.22 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=90.8
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGG 509 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 509 (601)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44578888889999999999999996666543 335678888999999999999999999887 3345 57788889999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 510 CVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
|...|++++|.+.++++.++.|+++..+...+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999988886655543
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=4.7e-07 Score=74.14 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=86.6
Q ss_pred HHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 045105 421 FRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP 498 (601)
Q Consensus 421 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 498 (601)
|+++.. +.|+. ..+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|+..++++ ...|
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 34543 466667778888899999999886655543 345667788888888999999999998877 3344
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchH
Q 045105 499 -DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNY 537 (601)
Q Consensus 499 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 537 (601)
+...+..+...|...|++++|.+.++++.++.|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 567788888889999999999999999999999776553
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=1.4e-07 Score=81.93 Aligned_cols=170 Identities=10% Similarity=-0.028 Sum_probs=100.4
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHH
Q 045105 376 MYAKCGSLKHARLAYKRIST---PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTG 452 (601)
Q Consensus 376 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 452 (601)
.....|+++++...|+.... .....+..+...+...|++++|+..|++..+. .|+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 34445556665555543331 12334555666666777777777777776663 2221100000 00000
Q ss_pred HHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045105 453 SEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530 (601)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 530 (601)
. .. .....+..+..+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|.+.++++.+..
T Consensus 83 ~---~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 83 K---KN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp H---HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred H---HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0 00 01246677788888899999999888876 2334 67788888899999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCHHHHH-HHHHHHhhcCC
Q 045105 531 PNNTGNYVMLANLFAYAGRWSDLA-RTRQKMKDRRM 565 (601)
Q Consensus 531 p~~~~~~~~l~~~~~~~g~~~~A~-~~l~~~~~~~~ 565 (601)
|+++.++..++.++...|+.+++. ..+..|...+.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999988888 55666665543
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=1e-06 Score=70.43 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=89.0
Q ss_pred cCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 466 PSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 466 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
.+...+..+...+...|++++|++.+++. ...| +...+..+...+...|++++|.+.++++.+..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34557788888999999999999999987 4455 678888899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcCC
Q 045105 544 FAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 544 ~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+...|++++|.+.+++..+..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999877653
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=4.4e-07 Score=72.08 Aligned_cols=94 Identities=7% Similarity=0.026 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-------hHHHH
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTG-------NYVML 540 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 540 (601)
.+..+...+.+.|++++|++.|++. .+.| +...|..+...|...|++++|++.+++++++.|++.. ++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777777777777777765 3344 4666777777788888888888888888887776543 55667
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc
Q 045105 541 ANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 541 ~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.++...|++++|.+.+++..+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777788888888888776654
No 142
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.47 E-value=6.2e-05 Score=69.24 Aligned_cols=222 Identities=9% Similarity=-0.044 Sum_probs=162.0
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC--ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hh
Q 045105 33 CAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG--YDEEAIGMLFRMQAEGLEPNARTLSSVLPAC----AR 106 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~ 106 (601)
..+....++|+.+++.+.. ..|-+...|+.--.++...| ++++++++++.+.... +-+..+|+.--..+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3444456789999999998 55667788898888888888 9999999999998763 22333454433333 33
Q ss_pred c---CCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH--HHHHHHhhcCC---CCchhHHHHHHHHHhcCC---
Q 045105 107 L---QKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML--SALKIFSKFSI---KNEVSCNTIIVGYCENGN--- 175 (601)
Q Consensus 107 ~---~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~g~--- 175 (601)
. ++++++..+++.+.+.. +-+..+|+...-++.+.|.++ ++++.++++.. .|-.+|+.-...+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence 4 67889999999998875 557778888888888888887 88888888763 356667766666666666
Q ss_pred ---HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhH-HHHHHHHHHHcC-CCCCChhhHHHHHHHhcccCCHHHH
Q 045105 176 ---VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDE-AFSMFRDLLMRD-GIEPTSFTFGSVLIACADMNSLRKG 250 (601)
Q Consensus 176 ---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 250 (601)
++++++.++.+.... +-|...|+-+-..+.+.|+... +..+..+..... .-..+...+..+...+.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888999998888775 4577888888888888887555 445665554311 1134566777777788888888888
Q ss_pred HHHHHHHHH
Q 045105 251 KEIHALAIA 259 (601)
Q Consensus 251 ~~~~~~~~~ 259 (601)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888765
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=1.3e-06 Score=70.35 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=71.4
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 467 SLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
+...+..+...+...|++++|+..|++. ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3456666667777777777777777665 2233 4566777777777788888888888888888887777888888888
Q ss_pred HHcCCHHHHHHHHHHHhhcC
Q 045105 545 AYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 545 ~~~g~~~~A~~~l~~~~~~~ 564 (601)
...|++++|...+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 88888888888877776554
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=1.7e-06 Score=73.43 Aligned_cols=124 Identities=8% Similarity=0.082 Sum_probs=97.1
Q ss_pred HhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--h
Q 045105 443 CVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGG-CVSHGNL--E 517 (601)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~-~~~~g~~--~ 517 (601)
+...|++++|...++...... +.+...+..+...|...|++++|+..++++ ...| +...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 356788888988886555543 345678888899999999999999999887 2234 56677777777 7788988 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
+|...++++.+..|+++..+..++.+|...|++++|...++++.+..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999988776543
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.5e-06 Score=67.66 Aligned_cols=95 Identities=13% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
.+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|+++..+..++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444555555666666666665554 1122 4555555566666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHhhcC
Q 045105 548 GRWSDLARTRQKMKDRR 564 (601)
Q Consensus 548 g~~~~A~~~l~~~~~~~ 564 (601)
|++++|.+.+++..+..
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 66666666666665543
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2e-06 Score=70.27 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=58.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
...+..+...+...|++++|++.+++. ...|+ ...|..+...|...|++++|.+.++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334455555556666666666666554 33444 4455555566666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhcC
Q 045105 543 LFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 543 ~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++...|++++|.+.+++..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcC
Confidence 6666666666666666665443
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=8.4e-07 Score=72.13 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=82.0
Q ss_pred CccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 045105 430 RPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGAL 506 (601)
Q Consensus 430 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 506 (601)
.|+. ..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..+++. ...| +...+..+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4433 355566677778888888888886655543 345667777888888888888888888876 2344 56677788
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
...+...|++++|.+.++++.+..|+++.......
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88889999999999999999999887776554433
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=7.2e-06 Score=76.09 Aligned_cols=160 Identities=6% Similarity=-0.020 Sum_probs=109.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcC-CCCCHh----hHHHHHHHHHhcCCcchHHHHHHHHHHhcCC-Cc----hHHHH
Q 045105 64 AVIGGFTQNGYDEEAIGMLFRMQAEG-LEPNAR----TLSSVLPACARLQKLSLGKEFHGYITRNGFM-SN----PFVVN 133 (601)
Q Consensus 64 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~ 133 (601)
..+..+...|++++|.+++++..+.. ..|+.. .+..+...+...++++.|...++...+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667778888888888888877642 122321 2334555566667888888888888774322 22 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC------C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-eeeh
Q 045105 134 GLVDVYRRCGDMLSALKIFSKFSI------K----NEVSCNTIIVGYCENGNVAEARELFDQMEHL----GVQRG-IISW 198 (601)
Q Consensus 134 ~l~~~~~~~~~~~~a~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~ 198 (601)
.+..+|...|++++|...|++... . ...++..+...|.+.|++++|...+++.... +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888888888888888888877651 1 1235778888888999999998888877542 21121 4578
Q ss_pred HHHHHHHHhCCC-hhHHHHHHHHHHH
Q 045105 199 NSMISGYVDNSL-YDEAFSMFRDLLM 223 (601)
Q Consensus 199 ~~li~~~~~~~~-~~~a~~~~~~~~~ 223 (601)
..+..++.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888889999995 5899888887764
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=1.9e-06 Score=74.95 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=35.0
Q ss_pred cCChHHHHH---HHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHC----CCCcc-HHhHHHHHHHHhccCchHH
Q 045105 380 CGSLKHARL---AYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILAS----GFRPD-HISFLSALSACVHAGSIKT 451 (601)
Q Consensus 380 ~g~~~~a~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~ 451 (601)
.|++++|.+ .+..........+..+...|...|++++|...+++..+. +..|. ..++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 344555544 332222223344555555555556666665555554431 11111 1244444455555555555
Q ss_pred HHHHH
Q 045105 452 GSEFF 456 (601)
Q Consensus 452 a~~~~ 456 (601)
|...+
T Consensus 85 A~~~~ 89 (203)
T 3gw4_A 85 ARRCF 89 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.38 E-value=1.7e-06 Score=75.18 Aligned_cols=120 Identities=10% Similarity=-0.050 Sum_probs=68.8
Q ss_pred CCCCCchhHHH---HHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcC----CCCCChhhHHHHHHHHhhcCCh
Q 045105 3 GKCGSLDDAKK---VFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLD----NETPNLVSWSAVIGGFTQNGYD 75 (601)
Q Consensus 3 ~~~g~~~~A~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~ 75 (601)
...|++++|++ .+..-+.....++..+...+...|++++|+..+++..+.. ..+....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777777 5544333345567777777777777777777777655411 1112234566667777777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHhhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 045105 76 EEAIGMLFRMQAE----GLEP--NARTLSSVLPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 76 ~~a~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (601)
++|.+.+++..+. +-.| ....+..+...+...|++++|...++...+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777665442 1111 123355555556666666666666666553
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=1.5e-06 Score=69.15 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAPDS----VMWGALLGGCVSHGNLEFGQIAADRLIELEPNN---TGNYVMLANLFA 545 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 545 (601)
+...+...|++++|++.|+++ ...|+. ..+..+...+...|++++|...++++.+..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445556666666666666655 112322 355556666667777777777777777777766 555667777777
Q ss_pred HcCCHHHHHHHHHHHhhcC
Q 045105 546 YAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 546 ~~g~~~~A~~~l~~~~~~~ 564 (601)
..|++++|...++++.+..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 7777777777777666554
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=1.1e-06 Score=80.96 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=80.4
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...+..+...+.+.|++++|+..|+...+ ..+.+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44667778888889999999999999887 345578888889999999999999999999888752 335567778888
Q ss_pred HHHhcCCcchHHHHHHHHHHhc
Q 045105 103 ACARLQKLSLGKEFHGYITRNG 124 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g 124 (601)
++...|++++|...++...+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888899999999988887654
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.37 E-value=1e-05 Score=75.01 Aligned_cols=162 Identities=10% Similarity=-0.073 Sum_probs=118.1
Q ss_pred hHHhHHHHHHHhcCChHHHHHHHhcCC---CCCh------hhHHHHHHHHHHcCChhhHHHHHHHHHHCCC---Ccc--H
Q 045105 368 HIGTALVDMYAKCGSLKHARLAYKRIS---TPDL------VSQNAMLTAYAMHGHGKEGIAHFRRILASGF---RPD--H 433 (601)
Q Consensus 368 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~ 433 (601)
..+...+..+...|++++|...++... +... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344456777889999999999887543 1111 2234455667788999999999999876421 222 3
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhc-CCCcC-----chHHHHHHHHhhhcCChHHHHHHHHhC-CC------CC-C
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYY-DVKPS-----LKHYTCMVDLLSRAGELGEAYEFIKKI-PM------AP-D 499 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~~-~ 499 (601)
.+++.+...|...|++++|...++...+. ...|+ ..++..+..+|.+.|++++|++.+++. .. .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888899999999999999999554421 11122 257888999999999999999999876 11 11 1
Q ss_pred HHHHHHHHHHHHhcCChhHH-HHHHHHHHhc
Q 045105 500 SVMWGALLGGCVSHGNLEFG-QIAADRLIEL 529 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 529 (601)
..++..+...|...|++++| ...++++.+.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888899999999999 7778888765
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=9.9e-06 Score=63.62 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=83.7
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...|..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 456777778888888888888888888773 44567778888888888888888888888887753 345667777778
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYR 140 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 140 (601)
.+...|+++.|...++.+.+.. +.+...+..+..++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 8888888888888888887764 334444544444443
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.9e-06 Score=67.19 Aligned_cols=110 Identities=7% Similarity=-0.078 Sum_probs=77.4
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVS 512 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 512 (601)
.+......+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555666667777777777775544432 334566777777777788888887777766 3344 56677788888888
Q ss_pred cCChhHHHHHHHHHHhcC------CCCCchHHHHHHHHH
Q 045105 513 HGNLEFGQIAADRLIELE------PNNTGNYVMLANLFA 545 (601)
Q Consensus 513 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 545 (601)
.|++++|.+.++++.+.+ |+++.+...+..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 899999999999999888 766666666665543
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=7e-06 Score=63.76 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=74.7
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCV 511 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 511 (601)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++. ...| +...+..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555556666666666666664444432 224556666667777777777777777665 2233 5667777888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 512 SHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 512 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
..|++++|.+.++++.+..|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999888877777766553
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.34 E-value=1.9e-06 Score=77.37 Aligned_cols=192 Identities=8% Similarity=-0.092 Sum_probs=134.9
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHH-------HHHHHhcCChHHHHHHHhcCCC--C-------C----------
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTAL-------VDMYAKCGSLKHARLAYKRIST--P-------D---------- 397 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~--~-------~---------- 397 (601)
..++...|.+.|..+.+.... ....|..+ ...+.+.++..++...+..... | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 579999999999999987532 34455555 3444444444454444443331 1 1
Q ss_pred -----hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC--chH
Q 045105 398 -----LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS--LKH 470 (601)
Q Consensus 398 -----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 470 (601)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 112334567788999999999999999875 4655455555667889999999999996433321 111 236
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKIPMA---PD--SVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
+..+..++...|++++|+..|++.... |. ...+.....++.+.|+.++|...|+++.+.+|+ +.+...|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777889999999999999999988212 43 335666777888999999999999999999996 5544444
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=4.3e-06 Score=69.85 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=59.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+..+...+.+.|++++|++.|++. ...| +...|..+...|...|++++|+..++++++++|+++..+..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555556666666666666666655 2233 455566666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHhhcC
Q 045105 547 AGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 547 ~g~~~~A~~~l~~~~~~~ 564 (601)
.|++++|.+.+++..+..
T Consensus 92 ~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 666666666666655443
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.32 E-value=1.1e-05 Score=67.20 Aligned_cols=127 Identities=6% Similarity=-0.091 Sum_probs=85.3
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
..+..+...+...|++++|...|+...+ ..+.+...|..+..++...|++++|.+.+++..+.. +.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3566677777788888888888888777 345567778888888888888888888888877653 3345667777777
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHHHH--HHHHHHHhcCCHHHHHHHHhh
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFVVN--GLVDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~ 154 (601)
+...|++++|...++...+.. +.+...+. .+...+...|++++|.+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 777788888888887777654 22333332 223334455666666555543
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=9.9e-06 Score=64.25 Aligned_cols=119 Identities=9% Similarity=-0.046 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 045105 23 CVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLP 102 (601)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (601)
...+..+...+...|++++|+..|+...+ ..+.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44667777888888899999998888877 345567788888888888889999888888887752 334667777778
Q ss_pred HHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCH
Q 045105 103 ACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDM 145 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 145 (601)
.+...|+++.|...++...+.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888887764 33556666666666666553
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=7.2e-07 Score=69.67 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=58.4
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHH
Q 045105 481 AGELGEAYEFIKKI-PM---AP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLAR 555 (601)
Q Consensus 481 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 555 (601)
.|++++|+..|++. .. .| +...+..+...|...|++++|.+.++++.+..|+++.++..++.++...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777665 33 23 345666777777777888888888888888888777788888888888888888888
Q ss_pred HHHHHhhcC
Q 045105 556 TRQKMKDRR 564 (601)
Q Consensus 556 ~l~~~~~~~ 564 (601)
.+++..+..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 877776554
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=2.7e-06 Score=68.74 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIEL-------EPNNTGNY----VMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
..|..+..++.+.|++++|+..+++++++ +|++...| +..+.++...|++++|...+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888888888888888888888 89888888 88999999999999999988887644
No 163
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=1.6e-06 Score=82.08 Aligned_cols=138 Identities=17% Similarity=0.037 Sum_probs=96.1
Q ss_pred CchhHHHHHhhCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC---------------hhhHHHHHHH
Q 045105 7 SLDDAKKVFKMMPE--R-DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN---------------LVSWSAVIGG 68 (601)
Q Consensus 7 ~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---------------~~~~~~li~~ 68 (601)
++++|++.|+...+ | +...|..+...+.+.|++++|+..|++..+. .+.+ ...|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555543 2 3456777888888889999999988888774 2223 4677778888
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHH
Q 045105 69 FTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSA 148 (601)
Q Consensus 69 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 148 (601)
|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|+..++.. +.+...+..+..++.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877653 3355667777777777778888877777777764 33455666666667666666666
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=4.9e-06 Score=82.46 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=77.6
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|...++++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 357778888999999999999999887 3344 67788899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHH-HHHHhhc
Q 045105 546 YAGRWSDLART-RQKMKDR 563 (601)
Q Consensus 546 ~~g~~~~A~~~-l~~~~~~ 563 (601)
..|++++|.+. +++|.++
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 99999988754 6666444
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=2.4e-06 Score=71.24 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..|..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3455555555556666666666666666666556666666666666666666666655555443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=7.4e-06 Score=65.86 Aligned_cols=100 Identities=6% Similarity=-0.097 Sum_probs=71.6
Q ss_pred cHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGG 509 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 509 (601)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|+..+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44566666677777777777777775544433 234556777777777888888887777766 2234 56677888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC
Q 045105 510 CVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 510 ~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+...|+++.|...++++.+..|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888999999999988888776
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00013 Score=67.77 Aligned_cols=218 Identities=12% Similarity=0.035 Sum_probs=151.4
Q ss_pred cCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-ChHHHHHHHhcCC---CCChhhHHHHHHHHHHc-C-Chhh
Q 045105 343 SSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCG-SLKHARLAYKRIS---TPDLVSQNAMLTAYAMH-G-HGKE 416 (601)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~-~-~~~~ 416 (601)
.+.+..++|..+.+.+...+.. +..+++.--..+...| .++++..+++.+. ..+...|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445557899999999887643 4455555555566677 5999999999887 45666788777777776 7 8899
Q ss_pred HHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH--------HHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCC-----
Q 045105 417 GIAHFRRILASGFRPDHISFLSALSACVHAGSIK--------TGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGE----- 483 (601)
Q Consensus 417 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 483 (601)
++.+++++.+.. +-|...|+.-.-.+.+.|.++ ++++.++.+.+.. +-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 999999999863 345567766555555555666 8888887666654 3456678777777777776
Q ss_pred --hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhcC------CCC
Q 045105 484 --LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNL--------------------EFGQIAADRLIELE------PNN 533 (601)
Q Consensus 484 --~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~ 533 (601)
++++++.++++ ...| |...|+-+-..+.+.|.. ....+....+.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888766 4455 677887777777766653 22223332332222 346
Q ss_pred CchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 534 TGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+.++..++.+|...|+.++|.+.++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 678888999999999999999999998643
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=4.5e-06 Score=66.35 Aligned_cols=109 Identities=7% Similarity=0.026 Sum_probs=63.2
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCC----CC----HHHHH
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMA----PD----SVMWG 504 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----~~----~~~~~ 504 (601)
..+..+...+...|++++|...++...... +.+...+..+...|...|++++|...++++ ... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777775444432 234455566666666666666666666655 111 11 44555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
.+...+...|++++|.+.++++.+..| ++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 566666666666666666666666666 454444444443
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=4.9e-06 Score=72.04 Aligned_cols=143 Identities=11% Similarity=-0.040 Sum_probs=90.7
Q ss_pred CCCchhHHHHHhhCCCC---CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC--------------hhhHHHHHH
Q 045105 5 CGSLDDAKKVFKMMPER---DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN--------------LVSWSAVIG 67 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~--------------~~~~~~li~ 67 (601)
.|++++|.+.|+...+. ....+..+...+.+.|++++|+..|++..+.....|+ ...|..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 46666666666654432 3345667777888888999999888888773211121 166777777
Q ss_pred HHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHH
Q 045105 68 GFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLS 147 (601)
Q Consensus 68 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 147 (601)
+|...|++++|+..+++..+.. +.+...+..+..++...|+++.|...|+...+.. +.+...+..+..++...++.++
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777652 3355667777777777788888888777777653 3345566666666655555554
Q ss_pred HH
Q 045105 148 AL 149 (601)
Q Consensus 148 a~ 149 (601)
+.
T Consensus 175 ~~ 176 (198)
T 2fbn_A 175 KD 176 (198)
T ss_dssp --
T ss_pred HH
Confidence 44
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=3.8e-06 Score=83.60 Aligned_cols=119 Identities=7% Similarity=0.039 Sum_probs=92.2
Q ss_pred HHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 517 (601)
...+.+.|++++|...++...+.. +.+...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344567788888888886555542 334667888888888889999998888877 3445 5678888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCHHHHHHHHHH
Q 045105 518 FGQIAADRLIELEPNNTGNYVMLANL--FAYAGRWSDLARTRQK 559 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~l~~ 559 (601)
+|.+.++++.+..|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999998888 8889999999999883
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.3e-05 Score=63.76 Aligned_cols=108 Identities=12% Similarity=0.001 Sum_probs=68.7
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLG 508 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 508 (601)
.+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|+..+++. ...| +...+..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 4444444555555555555555443332 232 345555666666667777776666655 2233 4566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 045105 509 GCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF 544 (601)
Q Consensus 509 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 544 (601)
.+...|++++|...++++.+..|+++..+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 888888899999999999988888777776666554
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=1.1e-05 Score=77.28 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=78.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFA 545 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 545 (601)
...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|.+.++++.++.|++..++..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457788888999999999999999887 4556 57788889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHH
Q 045105 546 YAGRWSDLART 556 (601)
Q Consensus 546 ~~g~~~~A~~~ 556 (601)
..|+.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=6.6e-06 Score=68.23 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------CCc
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKIP----MAP----DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN------NTG 535 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 535 (601)
++..+...+...|++++|.+.+++.- ..+ ....+..+...+...|++++|.+.++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44445555556666666666555430 011 1345666777778888888888888888765321 235
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 536 NYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
.+..++.++...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677889999999999999999887754
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=3.7e-05 Score=58.86 Aligned_cols=100 Identities=11% Similarity=-0.041 Sum_probs=80.6
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC--CHhhHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEP--NARTLSS 99 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ 99 (601)
+...+..+...+...|++++|...|+...+ ..+.+...|..+...+...|++++|.+.+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 456777788888889999999999998887 345567788888888999999999999999888753 22 4667778
Q ss_pred HHHHHHhc-CCcchHHHHHHHHHHhc
Q 045105 100 VLPACARL-QKLSLGKEFHGYITRNG 124 (601)
Q Consensus 100 ll~~~~~~-~~~~~a~~~~~~~~~~g 124 (601)
+...+... |++++|.+.++...+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888887765
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.00019 Score=66.38 Aligned_cols=218 Identities=11% Similarity=-0.009 Sum_probs=140.8
Q ss_pred CCch-hhHHHHHHHHHHhCCCCchhHHhH---HHHHHHhcC-------ChHHHHHHHhcCC---CCChhhHHHHHHHHHH
Q 045105 345 LATM-ERGKQVHAYAIRCGYDSDVHIGTA---LVDMYAKCG-------SLKHARLAYKRIS---TPDLVSQNAMLTAYAM 410 (601)
Q Consensus 345 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g-------~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~ 410 (601)
.|.+ ++|......+...+.. +..+++. ++....+.. .++++..+++.+. +.+..+|+.-...+..
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 3443 3667777777654422 2222322 222222211 1566777777665 4566778777777777
Q ss_pred cCC--hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCc-hHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc------
Q 045105 411 HGH--GKEGIAHFRRILASGFRPDHISFLSALSACVHAGS-IKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA------ 481 (601)
Q Consensus 411 ~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 481 (601)
.++ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.+..+.+.. +-|...|+.....+.+.
T Consensus 121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC--
T ss_pred cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccc
Confidence 774 789999999998864 4455677666666667777 588888886666654 34555666665555444
Q ss_pred --------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCCchHHHH
Q 045105 482 --------GELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH-----------GNLEFGQIAADRLIELEPNNTGNYVML 540 (601)
Q Consensus 482 --------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l 540 (601)
+.++++++.+++. ...| |...|+-+-..+.+. +.++++++.++++.++.|++...+..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 4577888888776 3355 667777666665554 357899999999999999876555555
Q ss_pred HHHHH---HcCCHHHHHHHHHHHhhcCC
Q 045105 541 ANLFA---YAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 541 ~~~~~---~~g~~~~A~~~l~~~~~~~~ 565 (601)
+.+.. ..|..++....+.++.+-++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 43322 35778888888888876653
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.11 E-value=0.00057 Score=63.55 Aligned_cols=180 Identities=13% Similarity=0.026 Sum_probs=120.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC-ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG-YDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
++.+.....+.+..++|+++++.+.. ..+-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34344444556677889999999988 45667788888777777777 5899999999998763 33455666655555
Q ss_pred Hhc-C-CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHH--------HHHHHHhhcC---CCCchhHHHHHHHHH
Q 045105 105 ARL-Q-KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDML--------SALKIFSKFS---IKNEVSCNTIIVGYC 171 (601)
Q Consensus 105 ~~~-~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~---~~~~~~~~~li~~~~ 171 (601)
... + ++++++++++.+.+.. +-+..+|+...-++.+.|.++ ++++.++++. ..|..+|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 555 5 7788888888887654 445667766555555555554 6777766655 235566776666666
Q ss_pred hcCC-------HHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCC
Q 045105 172 ENGN-------VAEARELFDQMEHLGVQRGIISWNSMISGYVDNSL 210 (601)
Q Consensus 172 ~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 210 (601)
+.+. ++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6665 577777777776654 3466666665555555554
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=2.3e-06 Score=66.69 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=57.4
Q ss_pred cCchHHHHHHHHHHHhcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 045105 446 AGSIKTGSEFFDLMAYYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQI 521 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 521 (601)
.|++++|+..|+...+.+ -+.+...+..+..+|...|++++|+..+++. ...| +...+..+...+...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666665444432 1223445666666677777777777777665 2234 45667777777788888888888
Q ss_pred HHHHHHhcCCCCCchHH
Q 045105 522 AADRLIELEPNNTGNYV 538 (601)
Q Consensus 522 ~~~~~~~~~p~~~~~~~ 538 (601)
.++++.+..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 88888888887665443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=4.3e-05 Score=60.50 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=67.8
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCc---hHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSL---KHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD----SVMWGALLGGC 510 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~ 510 (601)
+...+...|++++|...++...+... .+. ..+..+..++.+.|++++|+..++++ ...|+ ...+..+...+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34455566677777777655444321 122 35566667777777777777777665 22332 45566777788
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 511 VSHGNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 511 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
...|++++|...++++.+..|+++........+
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 888999999999999999888766555544433
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=1.1e-05 Score=63.09 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=62.4
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 045105 436 FLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH 513 (601)
Q Consensus 436 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 513 (601)
+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|+..+++. ...| +...+..+...+...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3344556666777777777775544432 234556666777777777777777777766 3344 456677777778888
Q ss_pred CChhHHHHHHHHHHhcCCCCC
Q 045105 514 GNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~ 534 (601)
|++++|...++++.+.+|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888877543
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=5.2e-06 Score=78.62 Aligned_cols=151 Identities=7% Similarity=-0.038 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHH
Q 045105 398 LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDL 477 (601)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (601)
...+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666777777888899999988888774 455432 223344444433321 1367778888
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCHHHHH
Q 045105 478 LSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLF-AYAGRWSDLA 554 (601)
Q Consensus 478 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 554 (601)
|.+.|++++|+..+++. ...| +...|..+..+|...|++++|.+.++++.+++|+++.++..+..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 3345 6778888999999999999999999999999999998888888874 4567788888
Q ss_pred HHHHHHhhcCCcc
Q 045105 555 RTRQKMKDRRMHK 567 (601)
Q Consensus 555 ~~l~~~~~~~~~~ 567 (601)
..+++|.+..+..
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 8888887666443
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=1.3e-05 Score=63.59 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=47.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------CchHHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-PMA-PDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN-------TGNYVMLA 541 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~ 541 (601)
+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++.+..|++ +.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 444445555555555555555544 112 234444555555555555555555555555554433 44555555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc
Q 045105 542 NLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
.++...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555555555555443
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=5.1e-05 Score=59.95 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcC--CCCC----HhhHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEG--LEPN----ARTLS 98 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~ 98 (601)
++..+...+.+.|++++|++.|++..+ ..|.+...|+.+..+|...|++++|++.+++..+.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 566788889999999999999999888 456678889999999999999999999999887641 1111 13566
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHH
Q 045105 99 SVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVN 133 (601)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 133 (601)
.+..++...|+++.|.+.|+..++. .|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6667777888888888888887764 35554443
No 183
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=3.5e-05 Score=56.49 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCC
Q 045105 498 PDSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 570 (601)
+++..+..+..++...++ .++|...++++.+.+|+++.+...++..+.+.|++++|...|+++.+..+. +|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 467778888888765554 799999999999999999999999999999999999999999999998876 555
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=2e-05 Score=61.02 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=55.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 486 EAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 486 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+|++.+++. ...| +...+..+...|...|++++|...++++.+.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555544 3334 55667777777777778888888888888777777777777788888888888888777776554
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=4.8e-05 Score=75.03 Aligned_cols=163 Identities=7% Similarity=-0.165 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHH----hHHHHHHHHhccCchHHHHHHHHHHHh----cCCCcC-ch
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHI----SFLSALSACVHAGSIKTGSEFFDLMAY----YDVKPS-LK 469 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~ 469 (601)
.+..+...|...|++++|.+++.++.... -.++.. ..+.+-..+...|++++|..++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35677888899999999999888876521 112221 233333445567888999888854432 222222 34
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---C----C
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-----P--MAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN---N----T 534 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 534 (601)
++..+...|...|++++|..+++++ . ..+ ...++..++..|...|++++|...++++....|. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778889999999999999998776 1 122 2456778888899999999999999998876332 2 1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 535 GNYVMLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677777889999999998777653
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=1.3e-05 Score=66.70 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=62.4
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNT-GNYVMLANLF 544 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 544 (601)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|...++++.+++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 356777888888999999999988877 3345 577888899999999999999999999999999877 4455555444
Q ss_pred H
Q 045105 545 A 545 (601)
Q Consensus 545 ~ 545 (601)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.99 E-value=3.1e-05 Score=58.16 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
+...|..+...|...|++++|++.++++.+.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888999999999999999999999999999999999999999999999999887654
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00011 Score=72.34 Aligned_cols=193 Identities=9% Similarity=-0.093 Sum_probs=112.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCh---------------hhHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNL---------------VSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPN 93 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 93 (601)
...+.+.|++++|++.|..+.+......+. ..+..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455778899999999999988753222221 13677888999999999999998887653 11122
Q ss_pred Hhh----HHHHHHHHHhcCCcchHHHHHHHHHHh----cCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhcC----CC--
Q 045105 94 ART----LSSVLPACARLQKLSLGKEFHGYITRN----GFMS-NPFVVNGLVDVYRRCGDMLSALKIFSKFS----IK-- 158 (601)
Q Consensus 94 ~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-- 158 (601)
..+ .+.+-..+...|+++.+..+++..... +..+ -..++..+...|...|++++|..++++.. ..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 211 222222333457778888877766542 2222 23466667777777777777777776543 00
Q ss_pred ---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC-C-C--eeehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 159 ---NEVSCNTIIVGYCENGNVAEARELFDQMEHL--GVQ-R-G--IISWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 159 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-~-~--~~~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
...++..++..|...|++++|..+++..... .+. | . ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1234555666666666666666666555421 111 1 0 1223334444455556666655555443
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=3.1e-06 Score=65.15 Aligned_cols=92 Identities=10% Similarity=0.019 Sum_probs=71.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CchHHH
Q 045105 468 LKHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNN------TGNYVM 539 (601)
Q Consensus 468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~ 539 (601)
...+..+...+.+.|++++|++.+++. ...| +...|..+...+...|++++|.+.++++.+..|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445667778888888888888888776 2344 67778888888999999999999999999999987 667777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 045105 540 LANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 540 l~~~~~~~g~~~~A~~~l~~ 559 (601)
++.++...|++++|.+.+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888877766655443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=2.5e-05 Score=63.05 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI--------PMAPD-SVMW----GALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
.|..+..++.+.|++++|+..+++. ++.|+ ...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666665544 23774 4567 888889999999999999999999999998887
Q ss_pred HHHHHHH
Q 045105 537 YVMLANL 543 (601)
Q Consensus 537 ~~~l~~~ 543 (601)
...+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=3.8e-05 Score=72.65 Aligned_cols=150 Identities=10% Similarity=0.031 Sum_probs=79.2
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh
Q 045105 367 VHIGTALVDMYAKCGSLKHARLAYKRIST--PDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 367 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
...+..+...+.+.|++++|...|++... |+... +...|+..++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44566778889999999999999988663 33221 122233333332221 136777888889
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChhHHHH
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI-PMAPD-SVMWGALLGG-CVSHGNLEFGQI 521 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~a~~ 521 (601)
+.|++++|+..++...... +.+...|..+..+|...|++++|+..|+++ ...|+ ...+..+... ....+..+.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996666543 345678888999999999999999999988 45564 3444444444 234567788889
Q ss_pred HHHHHHhcCCCCC
Q 045105 522 AADRLIELEPNNT 534 (601)
Q Consensus 522 ~~~~~~~~~p~~~ 534 (601)
.+.++.+..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999988654
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=5.2e-05 Score=75.43 Aligned_cols=118 Identities=8% Similarity=0.028 Sum_probs=78.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch
Q 045105 373 LVDMYAKCGSLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (601)
+...+.+.|++++|...|++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445667788888888887665 3456677778888888888888888888888752 33455777777788888888
Q ss_pred HHHHHHHHHHHhcCCCcCchHHHHHHHH--hhhcCChHHHHHHHH
Q 045105 450 KTGSEFFDLMAYYDVKPSLKHYTCMVDL--LSRAGELGEAYEFIK 492 (601)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 492 (601)
++|.+.++...+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888885555542 2233445555555 677788888888777
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.00035 Score=70.83 Aligned_cols=169 Identities=9% Similarity=-0.060 Sum_probs=130.9
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC----------hhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccC-
Q 045105 382 SLKHARLAYKRIS---TPDLVSQNAMLTAYAMHGH----------GKEGIAHFRRILASGFRPDHISFLSALSACVHAG- 447 (601)
Q Consensus 382 ~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 447 (601)
..++|...++.+. +.+...|+.--..+...|+ +++++..++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777766 3444567766666666666 899999999999853 334567877777788888
Q ss_pred -chHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 045105 448 -SIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG-ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH---------- 513 (601)
Q Consensus 448 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---------- 513 (601)
++++++..++.+.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6699999997777765 346677887777788888 899999999888 4456 677787777776653
Q ss_pred ----CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHH
Q 045105 514 ----GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSD 552 (601)
Q Consensus 514 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 552 (601)
+.++++.+.+++++..+|++..+|..+.+++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888555
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.83 E-value=5.7e-05 Score=55.31 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=56.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAY 546 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 546 (601)
..+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|...++++.+.+|+++..+..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45555666667777777777777665 2233 456677777777788888888888888888888777777777777765
Q ss_pred cC
Q 045105 547 AG 548 (601)
Q Consensus 547 ~g 548 (601)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.83 E-value=2.1e-05 Score=77.90 Aligned_cols=139 Identities=11% Similarity=0.010 Sum_probs=84.2
Q ss_pred CchhHHHHHhhCCC---CCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCC---------------hhhHHHHHHH
Q 045105 7 SLDDAKKVFKMMPE---RDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPN---------------LVSWSAVIGG 68 (601)
Q Consensus 7 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---------------~~~~~~li~~ 68 (601)
++++|++.|+...+ .....|..+...+.+.|++++|+..|++..+. .+.+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555443 23346777778888888888888888887763 2222 4566667777
Q ss_pred HhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHH
Q 045105 69 FTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSA 148 (601)
Q Consensus 69 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 148 (601)
|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...|+..++.. +.+...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766642 2345556666666666666666666666666543 22334555555555555555544
Q ss_pred H
Q 045105 149 L 149 (601)
Q Consensus 149 ~ 149 (601)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.80 E-value=4.7e-05 Score=72.83 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+...|..+...|.+.|++++|++.++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988765
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.80 E-value=0.00011 Score=60.70 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCC-cc----HHhHHHHHHHHhccCchHHHHHHHHHHHhcC----CCc-Cch
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFR-PD----HISFLSALSACVHAGSIKTGSEFFDLMAYYD----VKP-SLK 469 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~ 469 (601)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...... .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665542100 11 1255556666677777777777774433211 111 133
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045105 470 HYTCMVDLLSRAGELGEAYEFIKKI-------PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELE 530 (601)
Q Consensus 470 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 530 (601)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|.+.++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5566667777778888777777655 1111 13456667777888899999999988887763
No 198
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.77 E-value=0.012 Score=54.43 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=126.5
Q ss_pred hcCCh-HHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC----------hHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 045105 35 ANGLV-LEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY----------DEEAIGMLFRMQAEGLEPNARTLSSVLPA 103 (601)
Q Consensus 35 ~~~~~-~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (601)
+.|.+ ++|+.+++.+.. ..|-+...|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44544 468888888877 445556666654444433332 467777777776642 3345556555555
Q ss_pred HHhcCC--cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC-HHHHHHHHhhcC---CCCchhHHHHHHHHHhc----
Q 045105 104 CARLQK--LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD-MLSALKIFSKFS---IKNEVSCNTIIVGYCEN---- 173 (601)
Q Consensus 104 ~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~li~~~~~~---- 173 (601)
+...++ ++.+..+++.+.+.. +-+..+|+...-++...|. ++++++.++.+. ..|..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 555553 667777777777764 4466677766666666676 477777776665 23555565554444433
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhC-----------CChhHHHHHHHHHHHcCCCCCChh
Q 045105 174 ----------GNVAEARELFDQMEHLGVQRGIISWNSMISGYVDN-----------SLYDEAFSMFRDLLMRDGIEPTSF 232 (601)
Q Consensus 174 ----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~ 232 (601)
+.++++++.++...... +-|..+|+-+--.+.+. +.++++++.++++.+ ..|+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle---~~pd~- 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE---LEPEN- 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH---HCTTC-
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh---hCccc-
Confidence 34677777777777654 44566665443333333 346677777777776 45654
Q ss_pred hHHH-----HHHHhcccCCHHHHHHHHHHHHHc
Q 045105 233 TFGS-----VLIACADMNSLRKGKEIHALAIAL 260 (601)
Q Consensus 233 ~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~ 260 (601)
.+.. ++......+..+++...+..+.+.
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 2221 112222345556666666666654
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=8.2e-05 Score=73.48 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=90.8
Q ss_pred HHhccCchHHHHHHHHHHHh---cCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCCC-HHHHH
Q 045105 442 ACVHAGSIKTGSEFFDLMAY---YDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAPD-SVMWG 504 (601)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~ 504 (601)
.+...|++++|+.+++...+ .-+.|+ ..+++.|..+|...|++++|+.++++. | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567788888777743332 222222 346777888888888888888877665 2 2343 35688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 505 ALLGGCVSHGNLEFGQIAADRLIEL-----EPNNTG---NYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 505 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.|...|...|++++|+.+++++.+. +|++|. +...+..++...|++++|+..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999874 677654 45678888899999999999999998755
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.74 E-value=1.9e-05 Score=63.61 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=59.0
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 045105 480 RAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGN----------LEFGQIAADRLIELEPNNTGNYVMLANLFAYA 547 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 547 (601)
+.+.+++|++.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444555555555544 2233 44455545555554443 55888888888888888888888888888876
Q ss_pred C-----------CHHHHHHHHHHHhhcCC
Q 045105 548 G-----------RWSDLARTRQKMKDRRM 565 (601)
Q Consensus 548 g-----------~~~~A~~~l~~~~~~~~ 565 (601)
| ++++|.+.+++..+..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 4 78888888888877664
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00011 Score=56.20 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+...|..+...+...|++++|.+.++++.+..|+++..+..++.++...|++++|.+.+++..+..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567788888999999999999999999999999999999999999999999999999999987664
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.00046 Score=55.21 Aligned_cols=112 Identities=8% Similarity=-0.032 Sum_probs=74.4
Q ss_pred CchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 045105 447 GSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIA 522 (601)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 522 (601)
+++++|..+|+...+.| .|+ .. |...|...+..++|++.|++.-..-+...+..|...|.. .+|+++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34566666665555554 222 22 555566666666677777665323455666666666666 6778888888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHH----cCCHHHHHHHHHHHhhcCC
Q 045105 523 ADRLIELEPNNTGNYVMLANLFAY----AGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 523 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~~~ 565 (601)
++++.+. .++.....|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888776 367778888888887 7888888888888777764
No 203
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.59 E-value=1.7e-05 Score=74.79 Aligned_cols=242 Identities=16% Similarity=0.162 Sum_probs=165.2
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVL 101 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (601)
.+.+|..|..+....+++.+|++.|-+ ..|+..|..+|.+..+.|.+++-+..+.-.++..-.| ..=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHH
Confidence 456889999999999999888876633 3567788899999999999999999888777653333 4445788
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC------------------------C
Q 045105 102 PACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS------------------------I 157 (601)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~ 157 (601)
-+|++.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+. .
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999988877555432 4666666677777888888888888887664 2
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 045105 158 KNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV 237 (601)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 237 (601)
.++.||..+-.+|+..+.+.-|.-.--.+.- ...-...++..|-..|.+++-+.+++.-.. --......|+-+
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 2677899999999999998887665444432 122234467778889999999999986542 112333445555
Q ss_pred HHHhcccCCHHHHHHHHHHHHHc-CCC------CchhHHHHHHHHHHhcCCHHHHHH
Q 045105 238 LIACADMNSLRKGKEIHALAIAL-GLQ------SDTFVGGALVEMYCRYQDLVAAQM 287 (601)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~~ 287 (601)
.-.|++- +.++..+-++....+ +++ -....|.-++-.|++..+++.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4444443 333333333322111 111 134577888888888888887754
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.57 E-value=0.00025 Score=51.74 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
+...+..+...+...|++++|...++++.+..|+++.++..++.++...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355777788889999999999999999999999999999999999999999999999999988765
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.43 E-value=0.0022 Score=65.04 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=121.0
Q ss_pred HHcCC-hhhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCc----------hHHHHHHHHHHHhcCCCcCchHHHHHHH
Q 045105 409 AMHGH-GKEGIAHFRRILASGFRPDH-ISFLSALSACVHAGS----------IKTGSEFFDLMAYYDVKPSLKHYTCMVD 476 (601)
Q Consensus 409 ~~~~~-~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 476 (601)
.+.|. .++|+..++++... .|+. ..|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-..
T Consensus 39 ~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w 115 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 115 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444 56889999999985 6655 456655555666666 899999997776654 345668888888
Q ss_pred HhhhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHc----
Q 045105 477 LLSRAG--ELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHG-NLEFGQIAADRLIELEPNNTGNYVMLANLFAYA---- 547 (601)
Q Consensus 477 ~~~~~g--~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 547 (601)
++.+.| +++++++.++++ ...| +...|+.-...+.+.| .++++.+.++++++.+|.|..+|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888889 679999999988 3344 7888888888888888 899999999999999999999999999998874
Q ss_pred ----------CCHHHHHHHHHHHhhcC
Q 045105 548 ----------GRWSDLARTRQKMKDRR 564 (601)
Q Consensus 548 ----------g~~~~A~~~l~~~~~~~ 564 (601)
++++++.+.+++.....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC
Confidence 66789999888876654
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.29 E-value=0.00063 Score=50.59 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=57.0
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCH
Q 045105 474 MVDLLSRAGELGEAYEFIKKI-PMAP-DSV-MWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRW 550 (601)
Q Consensus 474 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 550 (601)
....+.+.|++++|++.++++ ...| +.. .|..+...|...|++++|.+.++++.+.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888876 3344 455 77777788888888888888888888888877766532 455
Q ss_pred HHHHHHHHHH
Q 045105 551 SDLARTRQKM 560 (601)
Q Consensus 551 ~~A~~~l~~~ 560 (601)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.26 E-value=0.00032 Score=56.47 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=36.4
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCCCC
Q 045105 484 LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSH-----------GNLEFGQIAADRLIELEPNNT 534 (601)
Q Consensus 484 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 534 (601)
+++|+..|++. .+.| +...|..+..+|... |++++|++.|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666655 3444 445666666666655 589999999999999999653
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.15 E-value=0.0044 Score=49.42 Aligned_cols=111 Identities=10% Similarity=-0.080 Sum_probs=87.0
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhh----cCChHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSR----AGELGEA 487 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 487 (601)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|+...+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998887 44444 6666777778888999997766654 45667778888877 7899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 045105 488 YEFIKKIPMAPDSVMWGALLGGCVS----HGNLEFGQIAADRLIELE 530 (601)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 530 (601)
++.|++.-..-++..+..|...|.. .+|.++|.+.++++.+..
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 9999887434567777788888887 789999999999998875
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.15 E-value=0.0021 Score=49.34 Aligned_cols=61 Identities=13% Similarity=-0.008 Sum_probs=31.2
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 045105 24 VSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQ 86 (601)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 86 (601)
..+..+...+...|++++|+..|+...+ ..+.+...|..+..+|...|++++|...|++..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555554 223344455555555555555555555555544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.00053 Score=51.01 Aligned_cols=59 Identities=17% Similarity=0.370 Sum_probs=42.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCc-hHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTG-NYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...+...|++++|.+.++++.+..|+++. .+..++.+|...|++++|.+.+++..+..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34556667777777777777777777777 777777777777777777777777766553
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.12 E-value=0.0015 Score=64.55 Aligned_cols=131 Identities=9% Similarity=-0.017 Sum_probs=63.9
Q ss_pred HhhcCChHHHHHHHHHHHHc---CC---CC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHh-----cC-CC-chHHHHH
Q 045105 69 FTQNGYDEEAIGMLFRMQAE---GL---EP-NARTLSSVLPACARLQKLSLGKEFHGYITRN-----GF-MS-NPFVVNG 134 (601)
Q Consensus 69 ~~~~~~~~~a~~~~~~m~~~---~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ 134 (601)
+..+|++++|+.++++..+. -+ .| ...+++.|...|...|++++|..++++.++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777766665432 01 11 1235566666666666666666666555432 11 11 1234444
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHH
Q 045105 135 LVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEA 214 (601)
Q Consensus 135 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 214 (601)
|...|...|++++|+.++++ |+++++......-+....+.+.+-.++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~------------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICK------------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554442 222222222111111223344555566666677777
Q ss_pred HHHHHHHHH
Q 045105 215 FSMFRDLLM 223 (601)
Q Consensus 215 ~~~~~~~~~ 223 (601)
..+|..+..
T Consensus 455 e~~~~~~~~ 463 (490)
T 3n71_A 455 EFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.09 E-value=0.00072 Score=65.60 Aligned_cols=103 Identities=15% Similarity=0.045 Sum_probs=75.7
Q ss_pred hcCChHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCC---chHHHHH
Q 045105 480 RAGELGEAYEFIKKI--------P-MAPD-SVMWGALLGGCVSHGNLEFGQIAADRLIEL-----EPNNT---GNYVMLA 541 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 541 (601)
..|++++|+.++++. + ..|+ ..+++.|..+|...|++++|+.+++++++. .|++| .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777654 1 1232 357888899999999999999999998874 45544 5788899
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCccCCCcceEEeCCceeeeecCCCCCCchhhhhhhc
Q 045105 542 NLFAYAGRWSDLARTRQKMKDRRMHKSPGCSWIEDRDEIHKFRASDRSHDRSEEIYTII 600 (601)
Q Consensus 542 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (601)
.+|..+|++++|..++++..+.... +....||...+++..|
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHH
Confidence 9999999999999999988654321 1244577777777654
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.97 E-value=0.0023 Score=56.79 Aligned_cols=88 Identities=11% Similarity=0.192 Sum_probs=70.8
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCC-CchHHHHHHHHHHc-CCHHH
Q 045105 484 LGEAYEFIKKI-PMAPD---SVMWGALLGGCVS-----HGNLEFGQIAADRLIELEPNN-TGNYVMLANLFAYA-GRWSD 552 (601)
Q Consensus 484 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 552 (601)
..+|...+++. .+.|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ..++...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 44565 5678888888887 499999999999999999974 89999999999885 99999
Q ss_pred HHHHHHHHhhcCCccCCCc
Q 045105 553 LARTRQKMKDRRMHKSPGC 571 (601)
Q Consensus 553 A~~~l~~~~~~~~~~~~~~ 571 (601)
|.+.+++.....++.+|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999999888876774
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.95 E-value=0.0025 Score=47.44 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=50.9
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH
Q 045105 22 DCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 87 (601)
+...+..+..+|.+.|++++|+..|+...+. .+.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777888888888888888888888873 455667888888888888888888888887764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0014 Score=63.78 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHhhhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCC---chH
Q 045105 476 DLLSRAGELGEAYEFIKKI-P-----MAPD----SVMWGALLGGCVSHGNLEFGQIAADRLIEL-----EPNNT---GNY 537 (601)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~~-~-----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 537 (601)
..+.+.|++++|+.++++. . +.|+ ..+++.+..+|...|++++|+..++++++. .|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344667777777776554 0 1222 346777777888888888888888887764 34444 467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
..|+.+|..+|++++|..++++..+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 77888888888888888888877643
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.91 E-value=0.087 Score=40.18 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=100.3
Q ss_pred HHHHHH--HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhh
Q 045105 402 NAMLTA--YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLS 479 (601)
Q Consensus 402 ~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 479 (601)
..|+.+ +.-.|..++..++..+..+. .+..-|+.+|--....-+-+-..++++.+-+ -.|. .
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s 72 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------D 72 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------G
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------H
Confidence 334443 44568888888988888774 2445566666655566565666666654322 1221 2
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 480 RAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 480 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
.+|+......-+-.++ .+..-++..+......|..|.-.+++..+....|.+|..+..++.+|.+.|+..+|.+++++
T Consensus 73 ~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3445555554444443 23334556677888899999999999987666666899999999999999999999999999
Q ss_pred HhhcCCc
Q 045105 560 MKDRRMH 566 (601)
Q Consensus 560 ~~~~~~~ 566 (601)
.=++|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 9999975
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.83 E-value=0.034 Score=51.68 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=29.0
Q ss_pred CCChhhHHHHHHHHH--HcC---ChhhHHHHHHHHHHCCCCccH-HhHHHHHHHH
Q 045105 395 TPDLVSQNAMLTAYA--MHG---HGKEGIAHFRRILASGFRPDH-ISFLSALSAC 443 (601)
Q Consensus 395 ~~~~~~~~~ll~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~ 443 (601)
..+...|...+.+.. ..+ ...+|..+|++.++. .|+. ..|..+.-++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 456677777776643 333 357889999999885 6653 4454444433
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.014 Score=54.26 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=91.3
Q ss_pred CCccHHhHHHHHHHHh--cc---CchHHHHHHHHHHHhcCCCcC-chHHHHHHHHhh---hcC-C-------hHHHHHHH
Q 045105 429 FRPDHISFLSALSACV--HA---GSIKTGSEFFDLMAYYDVKPS-LKHYTCMVDLLS---RAG-E-------LGEAYEFI 491 (601)
Q Consensus 429 ~~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---~~g-~-------~~~A~~~~ 491 (601)
.+.+...|...+++.. .. ....+|..+|+...+. .|+ ...|..+..+|. ..+ . ...+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3556667777776543 33 3457899999766654 454 234444444432 111 1 11222222
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 492 KKIPM-APDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 492 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
..+.. ..++.++.++...+...|++++|...++++.+++| +...|..++.++.-.|++++|.+.+++.....+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23322 34778888888778778999999999999999997 677888999999999999999999998877664
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.57 E-value=7.9e-05 Score=70.40 Aligned_cols=204 Identities=12% Similarity=0.154 Sum_probs=141.2
Q ss_pred ChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHH
Q 045105 58 NLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVD 137 (601)
Q Consensus 58 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 137 (601)
....|..|..+....+...+|++.|-+. -|...|..++.++.+.|.++.....+....+..- ++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3467889999999999998888766332 2566789999999999999999999887776643 3445568999
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------CCCCeee
Q 045105 138 VYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLG--------------------VQRGIIS 197 (601)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------~~~~~~~ 197 (601)
+|++.++..+.++++. .||..-...+..-|...|.++.|.-+|..+.... -..++.|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999998766554433 4666667777777888888877776665543211 0246778
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 045105 198 WNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYC 277 (601)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (601)
|-.+-.+|...+.+.-|.-+--.+.- .......++..|-..|.+++...+++.-.... +....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 88888888888888777655544442 11222334555777788887777776655221 345567777777777
Q ss_pred hc
Q 045105 278 RY 279 (601)
Q Consensus 278 ~~ 279 (601)
+.
T Consensus 275 KY 276 (624)
T 3lvg_A 275 KF 276 (624)
T ss_dssp SS
T ss_pred hc
Confidence 65
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.48 E-value=0.013 Score=56.80 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=63.6
Q ss_pred ccCchHHHHHHHHHHHh---cCCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCCC-HHHHHHHH
Q 045105 445 HAGSIKTGSEFFDLMAY---YDVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAPD-SVMWGALL 507 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~ 507 (601)
..|++++|..+++.... .-+.|+ ..+++.|..+|...|++++|+.++++. | ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777743332 222333 346777888888888888888877665 2 2343 34678888
Q ss_pred HHHHhcCChhHHHHHHHHHHhc-----CCCCCchH
Q 045105 508 GGCVSHGNLEFGQIAADRLIEL-----EPNNTGNY 537 (601)
Q Consensus 508 ~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 537 (601)
..|...|++++|+.+++++.+. +|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 8899999999999999988874 66666443
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.43 E-value=0.019 Score=55.75 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=67.7
Q ss_pred HHHHhccCchHHHHHHHHHHHhc---CCCcC----chHHHHHHHHhhhcCChHHHHHHHHhC--------C-CCCC-HHH
Q 045105 440 LSACVHAGSIKTGSEFFDLMAYY---DVKPS----LKHYTCMVDLLSRAGELGEAYEFIKKI--------P-MAPD-SVM 502 (601)
Q Consensus 440 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~ 502 (601)
+..+.+.|++++|..+++...+. -+.|+ ..+++.|..+|...|++++|+.++++. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667778887777554432 12232 346777778888888888888877665 2 2343 346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCCchHH
Q 045105 503 WGALLGGCVSHGNLEFGQIAADRLIEL-----EPNNTGNYV 538 (601)
Q Consensus 503 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 538 (601)
++.|...|...|++++|+..++++.+. +|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 778888899999999999999998874 677665443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.33 E-value=0.25 Score=52.71 Aligned_cols=131 Identities=14% Similarity=0.007 Sum_probs=79.1
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChh
Q 045105 336 GIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGK 415 (601)
Q Consensus 336 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 415 (601)
..++..+.+.|.++.|.++.+. +. .-.......|++++|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4455556666777777665421 11 11334566788888888877664 4578888888888888888
Q ss_pred hHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCC
Q 045105 416 EGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIP 495 (601)
Q Consensus 416 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 495 (601)
.|.+.|.++.. |..+...+...|+.+...++-+.....| -++.-..+|.+.|++++|++++.+++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 88888887643 3334444444566555555444333332 12333444555666666666665553
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.026 Score=40.96 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=51.3
Q ss_pred CcCchHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 465 KPSLKHYTCMVDLLSRAGE---LGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 465 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
+.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..|+++.+.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456677777777754444 68888888877 3455 5666777777888899999999999999999886
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.025 Score=42.26 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=49.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHH
Q 045105 471 YTCMVDLLSRAGELGEAYEFIKKI-----P----MAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLA 541 (601)
Q Consensus 471 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 541 (601)
...|...+.+.|++..|...++.+ + -.+...++..+..++.+.|+++.|...++++.+..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 334555555666666665555443 0 1234567888888999999999999999999999998877655554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.19 E-value=0.011 Score=46.89 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChhH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAG---ELGEAYEFIKKI-PMA-P--DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 518 (601)
......+.+-|......+ +++..+...+..++++.+ +.++++.+|++. ... | +...+-.+.-+|.+.|++++
T Consensus 11 ~~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 344566777775444544 367778888888999888 566888888877 223 5 34566667777899999999
Q ss_pred HHHHHHHHHhcCCCCCchHH
Q 045105 519 GQIAADRLIELEPNNTGNYV 538 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~ 538 (601)
|.+.++.+.+.+|++..+..
T Consensus 90 A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHH
Confidence 99999999999997665443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.16 E-value=0.02 Score=45.54 Aligned_cols=67 Identities=7% Similarity=-0.052 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 498 PDSVMWGALLGGCVSHG---NLEFGQIAADRLIELE-P-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 498 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
++..+...+.+++++++ +.++++.+++.+.+.+ | ++...++.|+-++.+.|++++|++.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56666666666666666 4557777777777666 5 345666667777777777777777776665544
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.07 E-value=0.024 Score=42.31 Aligned_cols=67 Identities=6% Similarity=-0.072 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 499 DSVMWGALLGGCVSHGNLEFGQIAADRLIELE-------PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 499 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
+......+...+...|+++.|..+++++.+.. +..+.++..|+.++.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44455678888999999999999999999863 22456889999999999999999999999876653
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.99 E-value=0.063 Score=57.46 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=12.7
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 469 KHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 469 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
..|..+.+.+.+.|+++.|++.|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34444444444555555555444444
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.29 Score=39.95 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=23.6
Q ss_pred HhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 378 AKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 378 ~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555554443 23445555555555555555555555544
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.29 E-value=0.2 Score=38.17 Aligned_cols=93 Identities=12% Similarity=-0.042 Sum_probs=63.3
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGE---AYEFIKKIP-MA-P--DSVMWGALLGGCVSHGNLEF 518 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~ 518 (601)
......+.+-|......|. |+..+-..+..++.+.....+ ++.+++..- .. | .....-.|.-++.+.|++++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344455555633334343 666777778888888877666 788887762 22 3 23345556677899999999
Q ss_pred HHHHHHHHHhcCCCCCchHHH
Q 045105 519 GQIAADRLIELEPNNTGNYVM 539 (601)
Q Consensus 519 a~~~~~~~~~~~p~~~~~~~~ 539 (601)
|.+.++.+.+.+|+|..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999987765443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.21 E-value=1 Score=36.74 Aligned_cols=105 Identities=9% Similarity=0.034 Sum_probs=70.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPACARLQK 109 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (601)
.......|+++.|.++.+.+ .+...|..|......+|+++-|.++|..... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 44566778888888887764 3567888888888888888888888888753 3444444555666
Q ss_pred cchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 110 LSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 110 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
.+...++-+.....| -++.....+...|+++++.++|.+..
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 666555555444443 23444555666777777777776554
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.21 E-value=0.068 Score=41.81 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=15.8
Q ss_pred cHHhHHHHHHHHhccCch------HHHHHHHHH
Q 045105 432 DHISFLSALSACVHAGSI------KTGSEFFDL 458 (601)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~ 458 (601)
|..+|...+.-..+.|++ ++...+|+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~Yer 44 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQ 44 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHH
Confidence 344666666666666666 566666643
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.13 Score=53.08 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=50.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
...|...|+++.|+++.+++....|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344667899999999999999999999999999999999999999999999988
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.40 E-value=0.43 Score=37.42 Aligned_cols=106 Identities=9% Similarity=-0.033 Sum_probs=66.6
Q ss_pred CCCccchHHHHHHHHhcCCh------HHHHHHHHHhhhcCCCCCCh-hhHHHHHHHH------hhcCChHHHHHHHHHHH
Q 045105 20 ERDCVSWNSVVTACAANGLV------LEALECLERMSSLDNETPNL-VSWSAVIGGF------TQNGYDEEAIGMLFRMQ 86 (601)
Q Consensus 20 ~~~~~~~~~ll~~~~~~~~~------~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~------~~~~~~~~a~~~~~~m~ 86 (601)
..|..+|-..+...-+.|+. ++.+++|++... ..||+. ..|..-|..+ ...+++++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34667777777777777888 788888888777 455543 1222222211 22367778888888776
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCc
Q 045105 87 AEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSN 128 (601)
Q Consensus 87 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 128 (601)
...-.. ...|......-.+.|++..|.+++...+..+..|.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 653233 45555555555677788888888887777665543
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.24 E-value=5.3 Score=40.46 Aligned_cols=114 Identities=7% Similarity=-0.026 Sum_probs=70.1
Q ss_pred CChhhHHHHHHHHHHCCCCccHH----hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHH
Q 045105 412 GHGKEGIAHFRRILASGFRPDHI----SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEA 487 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 487 (601)
.+.+.|...|....... ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 47789999998887543 22332 2333333444455355666666443332 23333344455555678999999
Q ss_pred HHHHHhCCCCC-CHHH-HHHHHHHHHhcCChhHHHHHHHHHHh
Q 045105 488 YEFIKKIPMAP-DSVM-WGALLGGCVSHGNLEFGQIAADRLIE 528 (601)
Q Consensus 488 ~~~~~~~~~~~-~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 528 (601)
...|+.|+..+ +..- .--+..++...|+.++|...++.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999996433 2222 22244466678999999999999875
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.74 E-value=1.8 Score=33.23 Aligned_cols=117 Identities=9% Similarity=-0.021 Sum_probs=58.8
Q ss_pred CCCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCC---------------------CChhhHH
Q 045105 344 SLATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIST---------------------PDLVSQN 402 (601)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~~ 402 (601)
-.|..+++.++..+..+.. +..-||.+|.-....-+-+-...+++.+.+ .+....+
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd 95 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 95 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence 3577778888877777643 344455555444444444444444444331 1122233
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCC
Q 045105 403 AMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDV 464 (601)
Q Consensus 403 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 464 (601)
..+..+..+|+-++-..++.++... .+|++.....+..||.+.|+..+|.+++...-+.|+
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4444555555555555555554332 244555555555555555555555555544444444
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.30 E-value=0.14 Score=38.99 Aligned_cols=69 Identities=7% Similarity=-0.097 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 497 APDSVMWGALLGGCVSHGNLEF---GQIAADRLIELE-P-NNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.++..+-..+.+++.++.+... ++.+++.+...+ | .....++.|+-.+.+.|++++|++.++.+.+..+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4778888888899998887655 888888888776 5 3556888899999999999999999999987663
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.20 E-value=0.75 Score=41.00 Aligned_cols=94 Identities=13% Similarity=-0.045 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhh-----cCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhc-CCc
Q 045105 39 VLEALECLERMSSLDNETPNLVSWSAVIGGFTQ-----NGYDEEAIGMLFRMQAEGLEP--NARTLSSVLPACARL-QKL 110 (601)
Q Consensus 39 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~-~~~ 110 (601)
...|...+++..+....-.+-..|..+...|.+ -|+.++|.+.|++..+. .| +..++......+++. ++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 456666666666632111135567777777777 37777777777777764 44 245555566666663 777
Q ss_pred chHHHHHHHHHHhcCC--CchHHHHH
Q 045105 111 SLGKEFHGYITRNGFM--SNPFVVNG 134 (601)
Q Consensus 111 ~~a~~~~~~~~~~g~~--~~~~~~~~ 134 (601)
+.+.+.++..+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 7777777777776554 55444433
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.46 E-value=0.28 Score=46.75 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHh-----hcCCccCCC
Q 045105 504 GALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMK-----DRRMHKSPG 570 (601)
Q Consensus 504 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-----~~~~~~~~~ 570 (601)
..++.++...|+++++...+..+...+|-+...+..++.+|.++|+..+|++.++++. +-|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3445556666777777777777777777666677777777777777777777766653 335555443
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.38 E-value=6.2 Score=35.77 Aligned_cols=168 Identities=11% Similarity=0.056 Sum_probs=100.9
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHH----HHHHHHHCCCCccHHhHHHHHHHHh
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIA----HFRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|.. +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666678888888888876532 2334556677665554 3555666788888887777777665
Q ss_pred ccCchHH-HHHHHHHHH----hcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 045105 445 HAGSIKT-GSEFFDLMA----YYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSH---G 514 (601)
Q Consensus 445 ~~g~~~~-a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g 514 (601)
.-..-+. =.++.+.+. +.| ..-++..+..+...|.+.|++.+|...|- .+..-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 5322111 111222222 222 22356778888899999999999998886 33122455555555555444 4
Q ss_pred ChhHHHHHHHHHHhcCCCCCchH-HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 515 NLEFGQIAADRLIELEPNNTGNY-VMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 515 ~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
...+ ...| ...+--|.-.|+...|..+++...++
T Consensus 183 ~~~e---------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDST---------------VAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHH---------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred Ccch---------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3222 1122 12233456789999999998877543
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.09 E-value=1.2 Score=32.05 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=53.6
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...|..-.-+..+-...+.|++......+++|.+.+++..|.++++-++..-- ....+|..+++
T Consensus 21 ~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 21 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 77778888777778888888999999999999999999999999999988775432 22456666654
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.04 E-value=1.2 Score=34.58 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCcCchHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 464 VKPSLKHYTCMVDLLSRAGELG---EAYEFIKKI-PMAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 464 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
-.|+..+--.+..++.+....+ +++.+++.+ ...| .....-.|.-++.+.|+++.|.+..+.+.+.+|+|..+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3566666666777777776544 456666655 1123 23344456667788888888888888888888866544
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.57 E-value=1.8 Score=41.16 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=51.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHH-----cCCCCCHhhH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQA-----EGLEPNARTL 97 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 97 (601)
++..+...|++++|+..++.+.. ..|-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44556678888888888888776 4667788888888888888888888888887654 3788877654
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.49 E-value=0.54 Score=36.00 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=45.2
Q ss_pred CCCcCchHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCch
Q 045105 463 DVKPSLKHYTCMVDLLSRAGEL---GEAYEFIKKI-PMAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGN 536 (601)
Q Consensus 463 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 536 (601)
+-.|+..+--.+..++.+.... .+++.+++.+ ...| ....+-.|.-++.+.|+++.|.+..+.+.+.+|+|..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3455555555666677666554 3455565554 1123 23445556666777777777777777777777766544
Q ss_pred H
Q 045105 537 Y 537 (601)
Q Consensus 537 ~ 537 (601)
.
T Consensus 115 ~ 115 (134)
T 3o48_A 115 G 115 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.35 E-value=3.8 Score=39.72 Aligned_cols=250 Identities=10% Similarity=0.062 Sum_probs=141.2
Q ss_pred CChHHHHHHHHHhhhcC----CCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHH----hc
Q 045105 37 GLVLEALECLERMSSLD----NETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE-GLEPNARTLSSVLPACA----RL 107 (601)
Q Consensus 37 ~~~~~A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~----~~ 107 (601)
|++++|++-+-.+.+.. ...........++..|...|+|+...+.+.-+.+. |..+. ....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 67788877765554421 12233455777888899999999888877766544 32222 2233333332 22
Q ss_pred CCcchHHHHHHHHHH------hc-CCC---chHHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-----CchhHHHHHH
Q 045105 108 QKLSLGKEFHGYITR------NG-FMS---NPFVVNGLVDVYRRCGDMLSALKIFSKFSI----K-----NEVSCNTIIV 168 (601)
Q Consensus 108 ~~~~~a~~~~~~~~~------~g-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-----~~~~~~~li~ 168 (601)
...+. +....... .| +-. .......|...+...|++.+|..++..+.. . -...+...++
T Consensus 108 ~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22221 11111111 11 111 123445788889999999999999988751 1 1335777888
Q ss_pred HHHhcCCHHHHHHHHHHHHh----cCCCCC--eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHH---
Q 045105 169 GYCENGNVAEARELFDQMEH----LGVQRG--IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLI--- 239 (601)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~--- 239 (601)
.|...+++..|..++..+.. ....|+ ..-|...+..+...++|.+|...|.+.........+...+..++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 89999999999999988742 111222 234556677778889999999888887653323233322222211
Q ss_pred -HhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHHHHhh
Q 045105 240 -ACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCRY--QDLVAAQMAFD 290 (601)
Q Consensus 240 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~ 290 (601)
+..-.+....-..+.........-++...+..++.+|... .++......|.
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 1111111122222333333333335566778888888664 35566655555
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.51 E-value=3.2 Score=42.94 Aligned_cols=125 Identities=12% Similarity=0.030 Sum_probs=71.9
Q ss_pred HHHHHHhcCC-hHHHHHHHHHhhhcCCCCCChhhH-HHHHHHHhhcCC-hHHHHHHHHHHHHc------CCCCCHh----
Q 045105 29 VVTACAANGL-VLEALECLERMSSLDNETPNLVSW-SAVIGGFTQNGY-DEEAIGMLFRMQAE------GLEPNAR---- 95 (601)
Q Consensus 29 ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~p~~~---- 95 (601)
++..+.-.++ .+.|+++|+.+.+. .+.....| ..++..+.+.++ --+|.+++.+..+. ...+...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 4444444555 57789999988873 22222222 233333333332 22455555444321 1111110
Q ss_pred -------hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 96 -------TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 96 -------~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
....-.+.|...|+++.|+++-+...... +.+-.+|..|..+|...|+++.|+-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112233556788888888888877763 4456688888888888888888888888876
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.41 E-value=10 Score=34.60 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=102.1
Q ss_pred HHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHH----HHHHHHCCCCccHHhHHHHHHHHh
Q 045105 369 IGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAH----FRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 369 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
+|.++..=|.+.+++++|.+++.. -...+.+.|+...|..+ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566668888999988886532 22345556665554444 455666778888877777777665
Q ss_pred ccCchHHHHHHH-HHH----HhcC--CCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 045105 445 HAGSIKTGSEFF-DLM----AYYD--VKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLE 517 (601)
Q Consensus 445 ~~g~~~~a~~~~-~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 517 (601)
....-+-...-| +.+ .+.| ..-|+.....+...|.+.+++.+|...|- .+..++...+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 544322111111 222 2223 23456677888899999999999999884 3534455666666665555443
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHHHHcCCHHHHHHHHHHHhh
Q 045105 518 FGQIAADRLIELEPNNTGNYV-MLANLFAYAGRWSDLARTRQKMKD 562 (601)
Q Consensus 518 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~l~~~~~ 562 (601)
|.....|. ..+--|.-.|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 234456778999999998777654
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.45 E-value=2.1 Score=30.77 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 494 IPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 494 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
+.+-|++.+..+.+.+|++.+|+..|.++++-+.....+...+|-.++.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3567999999999999999999999999999999886655556666553
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.32 E-value=12 Score=41.37 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchH
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIK 450 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (601)
.|..+.+++...|++++|...+-.+..... -...+..|+..++..|..+
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 466677777777888877777766665432 2334555666555555443
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.78 E-value=2.8 Score=31.98 Aligned_cols=67 Identities=15% Similarity=0.327 Sum_probs=54.5
Q ss_pred CCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchhhHHHHHHHHHHhCCCCchhHHhHHHH
Q 045105 308 EPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATMERGKQVHAYAIRCGYDSDVHIGTALVD 375 (601)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (601)
.|+...|..-.-+..+....+.|++......+++|.+.+++..|.++++-++..- .+...+|..+++
T Consensus 64 ~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 64 KPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred CcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 7888888887788888888999999999999999999999999999999877543 233556766654
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.67 E-value=28 Score=37.05 Aligned_cols=257 Identities=12% Similarity=0.069 Sum_probs=134.2
Q ss_pred HHHhcCCHHHHHHHHhhcCCC----Cchh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCeeehHHHHHH
Q 045105 138 VYRRCGDMLSALKIFSKFSIK----NEVS--CNTIIVGYCENGNVAEARELFDQMEHLGV-------QRGIISWNSMISG 204 (601)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~ 204 (601)
+....|+.++++.+++..... +..+ =..+.-+.+..|..+++.+++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 355677888888888877652 2222 22344455666766677777766554210 0111112223333
Q ss_pred HHhCCC-hhHHHHHHHHHHHcCCCCCChhhHHH--HHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH--HHhc
Q 045105 205 YVDNSL-YDEAFSMFRDLLMRDGIEPTSFTFGS--VLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEM--YCRY 279 (601)
Q Consensus 205 ~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~ 279 (601)
++-.|. -+++.+.+..++.... +....... +-..+...|+.+....++..+.+.. +..+...+..+ +...
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 333343 2456666666665221 11111121 2223456777777777777766532 23333333333 4456
Q ss_pred CCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHh--HHHHHHHHhcCCCchhhHHHHHHH
Q 045105 280 QDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIY--TVGIILSACSSLATMERGKQVHAY 357 (601)
Q Consensus 280 g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~ 357 (601)
|+.+.+..+++ .+... . .|... ....+.-+|+..|+......++..
T Consensus 538 g~~e~~~~li~----------~L~~~---~-------------------dp~vRygaa~alglAyaGTGn~~aIq~LL~~ 585 (963)
T 4ady_A 538 GRQELADDLIT----------KMLAS---D-------------------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585 (963)
T ss_dssp TCGGGGHHHHH----------HHHHC---S-------------------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred CChHHHHHHHH----------HHHhC---C-------------------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77766666655 22210 0 11111 112344578889998888888888
Q ss_pred HHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCC-CCChhh--HHHHHHHHHHcCCh-hhHHHHHHHHHHCCCCccH
Q 045105 358 AIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRIS-TPDLVS--QNAMLTAYAMHGHG-KEGIAHFRRILASGFRPDH 433 (601)
Q Consensus 358 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~--~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~p~~ 433 (601)
+.+.. ..++.-...+.-++...|+.+.+.++++.+. ..|... -..+.-+....|.. .+++.++..+.. .+|.
T Consensus 586 ~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~ 661 (963)
T 4ady_A 586 AVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVD 661 (963)
T ss_dssp HHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSH
T ss_pred hccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCH
Confidence 87642 2233333333334445677777888887554 233333 33344445555554 578888888865 4454
Q ss_pred Hh
Q 045105 434 IS 435 (601)
Q Consensus 434 ~~ 435 (601)
.+
T Consensus 662 ~V 663 (963)
T 4ady_A 662 FV 663 (963)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.57 E-value=5.4 Score=31.00 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 497 APDSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.|+..+--.+.+++.++.+ ..+++.+++.+....|. ....++.|+-.+.+.|++++|++..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 5677777777778877764 45677788888877774 44577778888888999999988888887665
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.56 E-value=3 Score=31.91 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 497 APDSVMWGALLGGCVSHGN---LEFGQIAADRLIELEPN-NTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 497 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
.|+..+--.+.+++.++.+ ..+++.+++.+...+|. ....+..|+-.+.+.|++++|++..+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4555555556666666543 34566666666666663 34556666667777777777777777666544
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.50 E-value=15 Score=40.62 Aligned_cols=146 Identities=6% Similarity=-0.048 Sum_probs=95.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCC---------------
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGL--------------- 90 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------------- 90 (601)
...++..+.+.+..+-+.++..... .+...--.+..++...|++++|.++|++.-. |+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccc
Confidence 3446666777777777777665532 2333334566677788888888888866421 11
Q ss_pred --------CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch----HHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 045105 91 --------EPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP----FVVNGLVDVYRRCGDMLSALKIFSKFSIK 158 (601)
Q Consensus 91 --------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 158 (601)
..-..-|..++..+.+.+.++.+.++-...++.....+. ..|..+.+.+...|++++|...+-.++.+
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 001123677888888888888888887777765432222 26778889999999999998888766533
Q ss_pred --CchhHHHHHHHHHhcCCHHH
Q 045105 159 --NEVSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 159 --~~~~~~~li~~~~~~g~~~~ 178 (601)
-......++..++..|..+.
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhh
Confidence 23456667777776666544
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.27 E-value=3.5 Score=33.04 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=64.5
Q ss_pred HCCCCccHH--hHHHHHHHHhccCchHHHHHHHHHHHhc-CCCcCc-------hHHHHHHHHhhhcCChHHHHHHHHhC-
Q 045105 426 ASGFRPDHI--SFLSALSACVHAGSIKTGSEFFDLMAYY-DVKPSL-------KHYTCMVDLLSRAGELGEAYEFIKKI- 494 (601)
Q Consensus 426 ~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~- 494 (601)
..|+.|... ++.--+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345566554 4444567777888888888777553332 123331 24566777788888888888887764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 495 ---PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 495 ---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
..-+ ...+...+ . ....... -.. .+.+.+.-+.++.||...|++++|+.+++.+
T Consensus 91 q~~k~l~k~~s~~~~~-~---~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 91 QQKKALSKTSKVRPST-G---NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHhcCCCccccc-c---ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1111 11111000 0 0000000 001 1224467788999999999999999999864
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.37 E-value=3.1 Score=33.38 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=56.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-----CCCh-------hhHHHHHHHHHHcCChhhHHHHHHHHHHCC-CCccHH-hHH
Q 045105 372 ALVDMYAKCGSLKHARLAYKRIS-----TPDL-------VSQNAMLTAYAMHGHGKEGIAHFRRILASG-FRPDHI-SFL 437 (601)
Q Consensus 372 ~l~~~~~~~g~~~~a~~~~~~~~-----~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~~~ 437 (601)
.-+..+...|.++.|+-+.+.+. .++. .++..+..++...|++..|...|++.+... .-|... +..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34555666677777766665543 2332 134455666667777777777777654321 111111 110
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCC
Q 045105 438 SALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMA 497 (601)
Q Consensus 438 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 497 (601)
.+- . .. ... .......+...---+..+|.+.|++++|+.+++.++.+
T Consensus 105 ~~~-~--~s-s~p---------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STG-N--SA-STP---------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc-c--cC-CCc---------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 000 0 00 000 00011223334445777888888888888888888643
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.99 E-value=0.96 Score=39.61 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=39.5
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045105 477 LLSRAGELGEAYEFIKKI-PMAP-DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPN 532 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 532 (601)
.+.+.|++++|++.+..- ...| |...-..|+..++-.|++++|.+-++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 455777888877766544 3355 5555666777778888888888888888888774
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.75 E-value=23 Score=32.31 Aligned_cols=133 Identities=12% Similarity=0.106 Sum_probs=78.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH----HHHHHHcCCCCCHhhHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM----LFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l 100 (601)
.|.++..-|.+++++++|++++-.- ...+.+.|+...+-++ ++-+.+.++++|......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455566677777777777766551 3345556666655444 3556667888888887777
Q ss_pred HHHHHhcCCcc-hHHHHHH----HHHHhc--CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 045105 101 LPACARLQKLS-LGKEFHG----YITRNG--FMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCEN 173 (601)
Q Consensus 101 l~~~~~~~~~~-~a~~~~~----~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 173 (601)
+..+.....-+ .-..+.+ +-.+.| ..-|+.....+...|.+.+++.+|..-|-.-..+....|..++..+...
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 77776654322 1122333 333333 2346677777888888888888888776421222224555554444443
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.70 E-value=9.9 Score=27.18 Aligned_cols=89 Identities=17% Similarity=0.073 Sum_probs=62.2
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
....++|..|-+.+...+. ...+-..=+..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456777777777776654 22222222345778899999999999999999988877643 5678888888888788
Q ss_pred HHCCCCccHHhHHH
Q 045105 425 LASGFRPDHISFLS 438 (601)
Q Consensus 425 ~~~~~~p~~~~~~~ 438 (601)
..+| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8877 665555543
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.41 E-value=26 Score=31.74 Aligned_cols=132 Identities=8% Similarity=0.052 Sum_probs=79.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHH----HHHHHHHcCCCCCHhhHHHH
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIG----MLFRMQAEGLEPNARTLSSV 100 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l 100 (601)
.|.++..-|.+++++++|++++..- ...+.+.|+...|-+ +++.+.+.+++++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455556666667777777666551 334556677665555 45566667888888888888
Q ss_pred HHHHHhcCCcc-hHHHHHHHHH----HhcC--CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 045105 101 LPACARLQKLS-LGKEFHGYIT----RNGF--MSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCE 172 (601)
Q Consensus 101 l~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 172 (601)
+..+.....-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|..-|-.-...+...+..++.-+..
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 87776543222 2233444443 3332 24667788888888888888888876652221234445544444443
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.95 E-value=11 Score=27.04 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=60.9
Q ss_pred CCchhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHH
Q 045105 345 LATMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRI 424 (601)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 424 (601)
....++|..|-+.+...+. ...+-..=+..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456777777777776654 22222222345678899999999999999999988877644 4667778887777788
Q ss_pred HHCCCCccHHhHH
Q 045105 425 LASGFRPDHISFL 437 (601)
Q Consensus 425 ~~~~~~p~~~~~~ 437 (601)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 56555544
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.67 E-value=6.4 Score=30.06 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=42.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHH
Q 045105 491 IKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLAN 542 (601)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 542 (601)
+-.+.+-|++.+..+.+.+|.+.+|+..|.++++-+.....+...+|-.++.
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3344567999999999999999999999999999999886555666766653
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.29 E-value=12 Score=26.90 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
..++|.-|-+.+...|. ...+-..-+..+...|++++|..+.+...-||...|.++-. .+.|--+++...+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776653 22233333455667888888888888888778777766643 356667777777766666
Q ss_pred cCCCCCeeeh
Q 045105 189 LGVQRGIISW 198 (601)
Q Consensus 189 ~g~~~~~~~~ 198 (601)
.| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 55 3433333
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.16 E-value=11 Score=27.00 Aligned_cols=85 Identities=8% Similarity=-0.058 Sum_probs=56.6
Q ss_pred CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045105 109 KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEH 188 (601)
Q Consensus 109 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (601)
..++|.-|-+.+...|. ...+-..-+..+...|++++|..+.+...-||...|-++-. .+.|--+++...+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777776653 33333333455677899999999888888888877766643 467777777777777776
Q ss_pred cCCCCCeeeh
Q 045105 189 LGVQRGIISW 198 (601)
Q Consensus 189 ~g~~~~~~~~ 198 (601)
.| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 66 4443333
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.60 E-value=33 Score=31.74 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHHHHHcCC--hhhHHHHHHHHHHCCCCc
Q 045105 371 TALVDMYAKCGSLKHARLAYKRISTPDL---VSQNAMLTAYAMHGH--GKEGIAHFRRILASGFRP 431 (601)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p 431 (601)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+....++..+...|+-+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 4556666666677777776666665432 122223333333222 234555556665555433
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.25 E-value=30 Score=30.41 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHh
Q 045105 244 MNSLRKGKEIHALAIALGLQSDTF--VGGALVEMYCRYQDLVAAQMAF 289 (601)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~ 289 (601)
.++.....++++.+.+.|..++.. ...+.+...++.|+.+-+..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 344444455666666666554432 1123344445566655544333
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.75 E-value=52 Score=31.72 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 045105 73 GYDEEAIGMLFRMQAE-----GLEPNARTLSSVLPACARLQKLSLGKEFHGYITR 122 (601)
Q Consensus 73 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (601)
|+++.|++.+..+.+. ....+......++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6778888777666542 2333455677777778888888777776665553
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.61 E-value=36 Score=29.86 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=7.7
Q ss_pred CCCchhHHHHHhhCC
Q 045105 5 CGSLDDAKKVFKMMP 19 (601)
Q Consensus 5 ~g~~~~A~~~~~~~~ 19 (601)
.|+++-.+.+++.-.
T Consensus 15 ~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 15 NEDVDLVQQLLEGGA 29 (285)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 455555555555443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.56 E-value=4.6 Score=35.43 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 31 TACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
..+.+.|++++|++....-.+ ..|-|...-..|+..+|-.|+|++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445677888888887777666 45677777788888888888888888877777664
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.94 E-value=24 Score=29.40 Aligned_cols=53 Identities=11% Similarity=-0.036 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCC
Q 045105 75 DEEAIGMLFRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMS 127 (601)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 127 (601)
...+.++|..|...|+--. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444555555544433222 2234444444444455555555555554444444
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=73.13 E-value=40 Score=28.15 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 045105 128 NPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGN 175 (601)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 175 (601)
+..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.|+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 333444444444444443333333333334444444444444444444
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=70.73 E-value=97 Score=31.57 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHh
Q 045105 163 CNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVD 207 (601)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (601)
.-++|-.|.|.|++++|.++.++....- ..-...+...+..|+.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~~-~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKANI-KKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhH-hhhhHHHHHHHHHHHh
Confidence 4567777888888888888876654221 1112345555555553
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=69.81 E-value=31 Score=26.35 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=44.9
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC--hHHHHHHHHHHHHcCCCCCHh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY--DEEAIGMLFRMQAEGLEPNAR 95 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 95 (601)
...++.-|...|+.++|.+.++++.. ..-.....+..+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45688888889999999999999753 111223444555556555432 456778888888776554443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.60 E-value=40 Score=28.06 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 500 SVMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 500 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
...|......+...|++.+|.++++..++.
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344555555555555555555555555554
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.23 E-value=39 Score=26.63 Aligned_cols=55 Identities=7% Similarity=-0.053 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchH
Q 045105 76 EEAIGMLFRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPF 130 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 130 (601)
+.+.++|..|...|+-.. +..|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 447888888888766443 4456777777778888888888888888887777543
No 276
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=66.39 E-value=7.5 Score=24.84 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCccCCC
Q 045105 514 GNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHKSPG 570 (601)
Q Consensus 514 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 570 (601)
|...-..+.++.+.++.|+ ......-.-+-...|+.+.|...|-+|...+..++.|
T Consensus 4 ~~~~~~ee~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 4 GSSGCSEEDLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp CSSSSCHHHHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 4444445667777777884 2222222222355788999998888887776665543
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.33 E-value=56 Score=27.19 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=84.7
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHh
Q 045105 365 SDVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACV 444 (601)
Q Consensus 365 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 444 (601)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++...+.. ++...+.++.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444445555556666554444555555566666666666667766653 34444444443 455555556666666
Q ss_pred ccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 045105 445 HAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAAD 524 (601)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 524 (601)
+.+..+....+... .. .++..+-...+.++.+.|..+....+.+-+. .++..+-...+.++.+.++ +.+...+.
T Consensus 107 ~~~~~~~~~~L~~~-l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 107 QIGDERAVEPLIKA-LK---DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HHCCGGGHHHHHHH-TT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HhCcHHHHHHHHHH-Hh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 66664333222233 22 3555556666777777766543333333333 6677766777777777765 34555555
Q ss_pred HHHh
Q 045105 525 RLIE 528 (601)
Q Consensus 525 ~~~~ 528 (601)
.+.+
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.16 E-value=14 Score=35.66 Aligned_cols=60 Identities=5% Similarity=-0.021 Sum_probs=32.9
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC--chHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 435 SFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS--LKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 435 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
+...+...+.+.|+++.|.+.+..+...-..+. ...+-.+++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445556666666666666666655544322222 334445555555666666666555554
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.60 E-value=56 Score=26.91 Aligned_cols=149 Identities=10% Similarity=0.010 Sum_probs=61.6
Q ss_pred HHHhhCCCCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCC
Q 045105 13 KVFKMMPERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEP 92 (601)
Q Consensus 13 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 92 (601)
.+++.+..++...-...+..+.+.+..+....+.+.+ . .++...-...+.++...+..+.. ..+..+.. .+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~----~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~ 88 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K----DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DE 88 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c----CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CC
Confidence 3344444455555555555555555433332233222 1 23444444445555555543322 22222222 34
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 045105 93 NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCE 172 (601)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 172 (601)
+...-...+.++...++.+....+. .+.. .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444444555555544433222222 2221 33444444455555555543333333333333444444444444444
Q ss_pred cC
Q 045105 173 NG 174 (601)
Q Consensus 173 ~g 174 (601)
.|
T Consensus 165 ~~ 166 (201)
T 3ltj_A 165 IG 166 (201)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=64.47 E-value=25 Score=27.84 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC--hHHHHHHHHHHHHcCCCCCHhh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY--DEEAIGMLFRMQAEGLEPNART 96 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 96 (601)
.+.++.-|...|+.++|.+.++++.. ..-.....+..+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 46688889889999999999999753 111223444555555555332 4567778888877765544433
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.23 E-value=60 Score=31.12 Aligned_cols=97 Identities=7% Similarity=-0.093 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHH---
Q 045105 163 CNTIIVGYCENGNVAEARELFDQMEHLGV--QRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSV--- 237 (601)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l--- 237 (601)
...+...|.+.|++++|.+.|.++..... ..-...+-.+++.+...++|..+...+.+......-.++....+.+
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 34455555555555555555555544311 1122344455566666666666666665553321111222111111
Q ss_pred -HHHhcccCCHHHHHHHHHHHHH
Q 045105 238 -LIACADMNSLRKGKEIHALAIA 259 (601)
Q Consensus 238 -l~~~~~~~~~~~a~~~~~~~~~ 259 (601)
...+...+++..|-+.|-++..
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhc
Confidence 1123345666666666655543
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.54 E-value=83 Score=27.83 Aligned_cols=209 Identities=12% Similarity=0.001 Sum_probs=104.1
Q ss_pred CCCCchhHHHHHhhCC--CCCccchHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 045105 4 KCGSLDDAKKVFKMMP--ERDCVSWNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGM 81 (601)
Q Consensus 4 ~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 81 (601)
+..+.++..+++..-. .+|..-++ .+...+..|+.+-+..+++. +..++...-.+.+...+..|+.+-+.
T Consensus 8 ~~~~~~~v~~lL~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v~-- 79 (285)
T 3kea_A 8 NTWKSKQLKSFLSSKDTFKADVHGHS-ASYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVK-- 79 (285)
T ss_dssp GGCCHHHHHHHHHSTTTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHHH--
T ss_pred HhcCHHHHHHHHHhCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHHH--
Confidence 3456666666665432 12333333 34555667888777666665 33333222233455556677765444
Q ss_pred HHHHHHcCCCCCHh---hHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHH---HHHHHHHHHhcCCHHHHHHHHhhc
Q 045105 82 LFRMQAEGLEPNAR---TLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFV---VNGLVDVYRRCGDMLSALKIFSKF 155 (601)
Q Consensus 82 ~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~ 155 (601)
.+.+.|..++.. -.+.|.. .+..|+. ++.+.+.+.|..++... +...+...+..|+.+-+.-+++.-
T Consensus 80 --~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~----~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 80 --ILLFSGLDDSQFDDKGNTALYY-AVDSGNM----QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp --HHHHTTCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred --HHHHCCCCCCCcCCCCCcHHHH-HHHcCCH----HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 344456554432 2233333 3344544 35555556665554322 134455566778887777777665
Q ss_pred CCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhh
Q 045105 156 SIK-NEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT 233 (601)
Q Consensus 156 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 233 (601)
... +...-.+.+...+..|+.+-+.-+++.-.... ..+..-++..+...+..|..+ +.+-+.+ .|..|+...
T Consensus 153 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~~~~~~----~v~~Ll~-~gad~~~~~ 225 (285)
T 3kea_A 153 PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKDIE----MLQALFK-YDINIYSAN 225 (285)
T ss_dssp CTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHHHTCHH----HHHHHTT-SCBCSTTTT
T ss_pred CccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHHcCCHH----HHHHHHH-cCCCCCCCC
Confidence 433 22133445556667788776666555433222 122222333233344455543 3333333 677776654
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.35 E-value=1e+02 Score=28.93 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=25.2
Q ss_pred CCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 530 EPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 530 ~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
.|-....+..++..+.- ..++++..+-+|...|.
T Consensus 312 ~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 312 EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 56666777777776532 68899999999987764
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.21 E-value=39 Score=29.09 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHHc--CCCC----CHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 045105 66 IGGFTQNGYDEEAIGMLFRMQAE--GLEP----NARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVY 139 (601)
Q Consensus 66 i~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 139 (601)
++.+....++++|.+++++..+. ++++ +.......++.-...+.-.-+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 56667777777777777766542 2221 112222223332322222333333333322 34445555566666
Q ss_pred HhcCCHHHHHHHHhh
Q 045105 140 RRCGDMLSALKIFSK 154 (601)
Q Consensus 140 ~~~~~~~~a~~~~~~ 154 (601)
.+.|+.++|.++|-+
T Consensus 102 ~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHH
Confidence 777777777776643
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.21 E-value=42 Score=26.90 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchH
Q 045105 76 EEAIGMLFRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPF 130 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 130 (601)
+.+.++|..|...|+-.. +..|......+...|++.+|.++|+.-++.+..|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 346677888877765443 3456666666777788888888888887777776543
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.18 E-value=35 Score=28.99 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=10.2
Q ss_pred HHHhcCChHHHHHHHHH
Q 045105 32 ACAANGLVLEALECLER 48 (601)
Q Consensus 32 ~~~~~~~~~~A~~~~~~ 48 (601)
..++.|+.+....+++.
T Consensus 15 ~A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 15 KATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHc
Confidence 34556776666666654
No 287
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=58.28 E-value=1.1e+02 Score=28.14 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=49.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcC-ChHHHHHHHHHHHHcCCCCCHhh---HHHHH
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNG-YDEEAIGMLFRMQAEGLEPNART---LSSVL 101 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~---~~~ll 101 (601)
...++.-|...|+.++|.+.++++... .......+..+..++-+.. ..+.+..++..+.+.|+-+.... |..++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p--~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~ 91 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP--SLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL 91 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG--GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456788888899999999999987431 1111223333333333221 23456667777776665443332 22222
Q ss_pred HHHHhc-CCcchHHHHHHHHHH
Q 045105 102 PACARL-QKLSLGKEFHGYITR 122 (601)
Q Consensus 102 ~~~~~~-~~~~~a~~~~~~~~~ 122 (601)
..+-.. =|...|...+..+..
T Consensus 92 ~~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 92 ELAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHG
T ss_pred hhChHhhcCccchHHHHHHHHH
Confidence 222211 144555555555543
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.85 E-value=57 Score=27.60 Aligned_cols=180 Identities=9% Similarity=0.012 Sum_probs=81.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChh----hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHH---hHHHHHHHHhc
Q 045105 373 LVDMYAKCGSLKHARLAYKRISTPDLV----SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHI---SFLSALSACVH 445 (601)
Q Consensus 373 l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~ 445 (601)
.+...++.|+.+-+..+++.-..++.. ..+ .+...+..|+.+ +++.+.+.|..|+.. ..+.+ ...+.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~ 118 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST-PLHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCI-HLAAQ 118 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC-hhHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH-HHHHH
Confidence 445556677777777777654422211 122 233334455543 445555666555432 22233 33344
Q ss_pred cCchHHHHHHHHHHHhcCCCcCch---HHHHHHHHhhhcCChHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChhHH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLK---HYTCMVDLLSRAGELGEAYEFIKKIPMAPDSV---MWGALLGGCVSHGNLEFG 519 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a 519 (601)
.|..+-+.. +.+.|..++.. -.+.+..+ +..+...+..+++.+.+..++.. .-.+.+...+..|+.+-+
T Consensus 119 ~~~~~~~~~----Ll~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 193 (240)
T 3eu9_A 119 FGHTSIVAY----LIAKGQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193 (240)
T ss_dssp TTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHH-HHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred cCHHHHHHH----HHhcCCCccccCCCCCcHHHHH-HHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHH
Confidence 566543333 34445544432 22333333 34455556666666664333221 111234444566776654
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 045105 520 QIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRR 564 (601)
Q Consensus 520 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 564 (601)
..+++.-...+..+.... .......+.|+.+-+.-+++...+.+
T Consensus 194 ~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 194 SLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 444443211111121111 23334466788777766666554444
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.65 E-value=68 Score=25.26 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Q 045105 519 GQIAADRLIELE--PNNTGNYVMLANLFAYAGRWSDLARTRQKMKDRRMHK 567 (601)
Q Consensus 519 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~~~~ 567 (601)
+.+++..+...+ -..+.-|...+..+...|++++|.++++.=.+++.+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777666653 3345566677777777777777777777666655544
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.49 E-value=83 Score=30.79 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=34.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCCh--hhHH-HHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 25 SWNSVVTACAANGLVLEALECLERMSSLDNETPNL--VSWS-AVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 25 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
.+|.++..|...+.++.|..+.....--....+|. ..|. .+...+.-++++.+|.+.+....+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56666677777777777777777653100000111 1221 2344555566777777666665543
No 291
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.11 E-value=1.3e+02 Score=28.20 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHhHHHHHHHHhcCCCchh
Q 045105 270 GALVEMYCRYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIYTVGIILSACSSLATME 349 (601)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 349 (601)
..|+..|...|++.+|..++..+ ...+. ..|..+. -...+..-++.|...+++.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l------~~~~~----~~dd~~~----------------llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQL------LRELK----KLDDKNL----------------LVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------HHHHT----TSSCTHH----------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH------HHHHh----ccccchh----------------HHHHHHHHHHHHHHhccHH
Confidence 36788899999999998888822 22222 1111100 1123555666777788888
Q ss_pred hHHHHHHHHHH
Q 045105 350 RGKQVHAYAIR 360 (601)
Q Consensus 350 ~a~~~~~~~~~ 360 (601)
++...+.....
T Consensus 157 k~k~~l~~a~~ 167 (394)
T 3txn_A 157 KARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888776653
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=51.01 E-value=94 Score=24.87 Aligned_cols=29 Identities=7% Similarity=-0.029 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045105 501 VMWGALLGGCVSHGNLEFGQIAADRLIEL 529 (601)
Q Consensus 501 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 529 (601)
..|......+-..|++.+|.++++..++.
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444444445555555555555544
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.33 E-value=1.4e+02 Score=26.82 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=34.0
Q ss_pred hHHHHHHHhcCChHHHHHHHhcCCCCChh---hHHHHHHHHHHcCC--hhhHHHHHHHHHHCCCCcc
Q 045105 371 TALVDMYAKCGSLKHARLAYKRISTPDLV---SQNAMLTAYAMHGH--GKEGIAHFRRILASGFRPD 432 (601)
Q Consensus 371 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 432 (601)
..++.-|...|+.++|.+.++++..|... ....+..++-+.++ .+....++..+.+.|+-+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 45666677777888888888777755221 22223333333222 2345566666666554433
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.12 E-value=84 Score=27.78 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=7.0
Q ss_pred HHhcCChHHHHHHHh
Q 045105 377 YAKCGSLKHARLAYK 391 (601)
Q Consensus 377 ~~~~g~~~~a~~~~~ 391 (601)
.+..|+.+-+..+++
T Consensus 69 A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 69 AATLEDTKIVKILLF 83 (285)
T ss_dssp HTTSSSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344455554444444
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.39 E-value=59 Score=27.55 Aligned_cols=54 Identities=6% Similarity=-0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCch
Q 045105 76 EEAIGMLFRMQAEGLEPN-ARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNP 129 (601)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 129 (601)
+.+.++|..|...|+--. +..|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466677888877765443 345666666777778888888888887777766643
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.94 E-value=1.2e+02 Score=25.43 Aligned_cols=17 Identities=0% Similarity=-0.195 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHHhhc
Q 045105 139 YRRCGDMLSALKIFSKF 155 (601)
Q Consensus 139 ~~~~~~~~~a~~~~~~~ 155 (601)
.+..|+.+-+..+++..
T Consensus 86 A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34455555555555443
No 297
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.64 E-value=2.4e+02 Score=28.43 Aligned_cols=367 Identities=10% Similarity=-0.015 Sum_probs=170.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHhCCCh
Q 045105 132 VNGLVDVYRRCGDMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQRGIISWNSMISGYVDNSLY 211 (601)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 211 (601)
-..-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| .........++..+.+.|..
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34555666677778877776665 33355555566677777888777777777766655 44555667777777766654
Q ss_pred hH--HHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHc---------CCCCchhH---HHHHHHHHH
Q 045105 212 DE--AFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL---------GLQSDTFV---GGALVEMYC 277 (601)
Q Consensus 212 ~~--a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~---~~~li~~~~ 277 (601)
.. ...-++.+.. .| +......++... ..+.-..+... ..+... ...++... +..-+.-+.
T Consensus 153 t~~~~~~R~~~al~-~~---~~~~a~~l~~~l-~~~~~~~a~~~-~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 153 DPLAYLERIRLAMK-AG---NTGLVTVLAGQM-PADYQTIASAI-ISLANNPNTVLTFARTTGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CHHHHHHHHHHHHH-TT---CHHHHHHHHHTC-CGGGHHHHHHH-HHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-CC---CHHHHHHHHHhC-CHHHHHHHHHH-HHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHH
Confidence 32 3333333332 11 111111111111 11110111111 111110 01111111 111111122
Q ss_pred hcCCHHHHHHHhhhHHHHHHHHhhchhcCCCCChhhhhHHHHHHHHHhCCCCCCHh--HHHHHHHHhcCCCchhhHHHHH
Q 045105 278 RYQDLVAAQMAFDEIENIENLLGKMKEDGFEPNVYTWNAMQLFSEMLSLDLTPDIY--TVGIILSACSSLATMERGKQVH 355 (601)
Q Consensus 278 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~ 355 (601)
+ .+.+.|...+. ...+ .....+... ....+.......+...++...+
T Consensus 227 r-~d~~~A~~~~~----------~~~~--------------------~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~ 275 (618)
T 1qsa_A 227 R-QDAENARLMIP----------SLAQ--------------------AQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWR 275 (618)
T ss_dssp H-HCHHHHHHHHH----------HHHH--------------------HTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHH
T ss_pred h-cCHHHHHHHHH----------hhhh--------------------ccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 2 24555555554 2220 111222211 2233333444555344555555
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCcc
Q 045105 356 AYAIRCGYDSDVHIGTALVDMYAKCGSLKHARLAYKRISTPD---LVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPD 432 (601)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 432 (601)
....... .+.....-.+....+.|+++.|...|+.+.... ....-=+..++...|+.++|..+|..+... .
T Consensus 276 ~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~- 349 (618)
T 1qsa_A 276 DDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R- 349 (618)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C-
T ss_pred HhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C-
Confidence 5443322 333334444455557799999999998887432 222233455677789999999988888642 2
Q ss_pred HHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcC-ch-----HHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 045105 433 HISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPS-LK-----HYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGAL 506 (601)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 506 (601)
+|-.++. ..+.|..-.. ....+.+. .. ....-+..+...|...+|...+..+....+......+
T Consensus 350 --~fYg~lA-a~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~l 419 (618)
T 1qsa_A 350 --GFYPMVA-AQRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQL 419 (618)
T ss_dssp --SHHHHHH-HHHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred --ChHHHHH-HHHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHH
Confidence 2322221 2223321000 00001110 00 0112234566788888887777665223344434444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC---CCCchHHHHHHHHHHcCCHHHH
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEP---NNTGNYVMLANLFAYAGRWSDL 553 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A 553 (601)
.......|..+.++....+....+. .-|..|...+.-..+.-.++.+
T Consensus 420 a~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ 469 (618)
T 1qsa_A 420 ARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQS 469 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHH
T ss_pred HHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHH
Confidence 4445566777777655543322210 0123344455444444444443
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.28 E-value=87 Score=25.53 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=8.3
Q ss_pred HHhcCChHHHHHHHHH
Q 045105 33 CAANGLVLEALECLER 48 (601)
Q Consensus 33 ~~~~~~~~~A~~~~~~ 48 (601)
.+..|+.+....++..
T Consensus 12 A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 12 AANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHc
Confidence 3444565555555543
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.04 E-value=1.9e+02 Score=26.45 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=6.7
Q ss_pred HHHHHHHHHHh
Q 045105 502 MWGALLGGCVS 512 (601)
Q Consensus 502 ~~~~l~~~~~~ 512 (601)
.|.-++..|..
T Consensus 274 ~~~pll~~~~~ 284 (339)
T 1ug3_A 274 ARAKLLQKYLC 284 (339)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHcC
Confidence 35666666663
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.48 E-value=1.4e+02 Score=25.05 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhh---HHHHHHH
Q 045105 167 IVGYCENGNVAEARELFDQMEHLGVQRG---IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT---FGSVLIA 240 (601)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~ll~~ 240 (601)
+...+..|+.+-+..+++.....++.++ ....+.+ ...+..|..+-+..++ + .|..++... -.+.+..
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~-~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQETVQLLL----E-RGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHH----H-TTCCTTCCCTTTCCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHHHHHHH----H-cCCCcccccccCCCcHHHH
Confidence 4445567777766666555432222222 2223333 3334556654443333 3 454443221 1223344
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHHH
Q 045105 241 CADMNSLRKGKEIHALAIALGLQSDTFV--GGALVEMYCRYQDLVAAQ 286 (601)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~ 286 (601)
.+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+.
T Consensus 157 A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 157 AVENNSLSMV----QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 4456666544 44445565554321 123344445566655443
No 301
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.80 E-value=1.5e+02 Score=26.86 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhc------
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRA------ 481 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 481 (601)
+...|++++|+..|+.++ +...+.......+.+++.+++....+. +...-++.-.+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrEY-------ilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAREY-------ILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCcccH
Q ss_pred CChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHH
Q 045105 482 GELGEAYEFIKKIPMAP--DSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQK 559 (601)
Q Consensus 482 g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 559 (601)
.+--|-..+|....+.| -.-+++.-+....+.+++..|..+.++++++.|+ ....+.|.+++..
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~~ 252 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKNK 252 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHH
Q ss_pred HhhcC
Q 045105 560 MKDRR 564 (601)
Q Consensus 560 ~~~~~ 564 (601)
..+.+
T Consensus 253 ce~~~ 257 (325)
T 3mv2_A 253 ADSMA 257 (325)
T ss_dssp HHTSC
T ss_pred HhcCC
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.83 E-value=1.2e+02 Score=27.99 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=40.3
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC--hHHHHHHHHHHHHcCCCCCHhh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY--DEEAIGMLFRMQAEGLEPNART 96 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 96 (601)
.+.++.-|...|+.++|.+.++++.. ..-.....+..+..++-+.++ .+.+.+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~--p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC--CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45677777778888888888888753 111123344445555554332 3456677777776665544433
No 303
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=40.23 E-value=1e+02 Score=25.36 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=18.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHH
Q 045105 507 LGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANL 543 (601)
Q Consensus 507 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 543 (601)
+..|.+.|.+++|.+++++..+..|.+...-..|..+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3446677777777777777666655444444444433
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.36 E-value=87 Score=21.18 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=37.5
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 83 FRMQAEGLEPNARTLSSVLPACARLQ-KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+.|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556676666544 34445555544 566677777777776655666666666666666553
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.32 E-value=1.3e+02 Score=23.27 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=40.0
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 83 FRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 446667777666433 3445555556677788888888877766666666666666666663
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.71 E-value=1.7e+02 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=12.9
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 045105 29 VVTACAANGLVLEALECLER 48 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~ 48 (601)
.+...++.|+.+....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 45555666777777766665
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.26 E-value=1.7e+02 Score=24.22 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=38.5
Q ss_pred HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch-----HHHHHHHHHHHhcCCC
Q 045105 410 MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI-----KTGSEFFDLMAYYDVK 465 (601)
Q Consensus 410 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~ 465 (601)
+..+.+.|+-++-+|++.| .|....-..++-+...-|.- ..|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999 77777777777777666542 3444555555555643
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.21 E-value=1.6e+02 Score=23.74 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=8.8
Q ss_pred HHHhcCCHHHHHHHHhh
Q 045105 138 VYRRCGDMLSALKIFSK 154 (601)
Q Consensus 138 ~~~~~~~~~~a~~~~~~ 154 (601)
..+..|+.+-+..+++.
T Consensus 78 ~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33445666555555533
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.06 E-value=1.7e+02 Score=23.83 Aligned_cols=153 Identities=15% Similarity=0.083 Sum_probs=84.0
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhc
Q 045105 366 DVHIGTALVDMYAKCGSLKHARLAYKRISTPDLVSQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVH 445 (601)
Q Consensus 366 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 445 (601)
+..+-...+..+.+.|..+....+.+.+..++...-...+.++...+..+ +...+.++.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33444444455555555444444555555566665556666666666543 3444444443 4566555666666666
Q ss_pred cCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045105 446 AGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADR 525 (601)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 525 (601)
.+..+....+...+ . .++..+-...+.++.+.|..+....+.+-+. .++..+-...+.++...|+. .+...+..
T Consensus 103 ~~~~~~~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~-~~~~~L~~ 176 (201)
T 3ltj_A 103 IGDERAVEPLIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGGE-RVRAAMEK 176 (201)
T ss_dssp HCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSH-HHHHHHHH
T ss_pred hCcHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 66644333333332 2 3455566666777777776543333333343 56777777777777777653 45555555
Q ss_pred HHh
Q 045105 526 LIE 528 (601)
Q Consensus 526 ~~~ 528 (601)
+.+
T Consensus 177 ~l~ 179 (201)
T 3ltj_A 177 LAE 179 (201)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.60 E-value=1.5e+02 Score=23.13 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=40.7
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 82 LFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
.+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3446667777665433 4455666666778888999998888766677666666677777664
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.99 E-value=1.5e+02 Score=23.65 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHhhhcCCCCC--ChhhHHHHHH------HHhhcCChHHHHHHHHHHHH
Q 045105 37 GLVLEALECLERMSSLDNETP--NLVSWSAVIG------GFTQNGYDEEAIGMLFRMQA 87 (601)
Q Consensus 37 ~~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~------~~~~~~~~~~a~~~~~~m~~ 87 (601)
|++-+|-++|+..-.. ...+ ....|..||+ ...+.|++..|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~-~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYN-YGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTT-TCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777777776654 2233 3445555555 22346777777777766644
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.98 E-value=1.4e+02 Score=22.71 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=39.2
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 84 RMQAEGLEPNARTLSSVLPACARLQ-KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
.+++.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 45667777666443 3445555555 677788888888887766676666666666666663
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.97 E-value=1.3e+02 Score=25.83 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=17.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCC
Q 045105 66 IGGFTQNGYDEEAIGMLFRMQAEGLEPN 93 (601)
Q Consensus 66 i~~~~~~~~~~~a~~~~~~m~~~~~~p~ 93 (601)
+...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3344566777777667776666665555
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.88 E-value=1.9e+02 Score=23.94 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=40.6
Q ss_pred HHHHHH---HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCc-----hHHHHHHHHHHHhcCC
Q 045105 404 MLTAYA---MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGS-----IKTGSEFFDLMAYYDV 464 (601)
Q Consensus 404 ll~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~ 464 (601)
+|.++. +..+.+.|+-.+-+|++.|-.|....-..++-+...-|. ...|...++.....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 444443 457899999999999999988877777777777665553 2334444455455553
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.47 E-value=1.1e+02 Score=29.94 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCc------hHH-HHHHHHhhhcCChHHHHHHHHhC
Q 045105 434 ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSL------KHY-TCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~-~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
..++.+++.|...+.++.|..+..... ++.+. ..| -.+.+.+.-.+++.+|.+.|..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467777888888888888888876532 12111 111 12344556677888887777654
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.24 E-value=69 Score=27.68 Aligned_cols=55 Identities=7% Similarity=-0.084 Sum_probs=29.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCChh-------hHHHHHHHHh--hcCChHHHHHHHHHH
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNLV-------SWSAVIGGFT--QNGYDEEAIGMLFRM 85 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m 85 (601)
+...++.|+.+....+++.+.+. +..++.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 44556668888777777766554 3444422 2234443332 456665555555443
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.23 E-value=1.6e+02 Score=22.99 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=41.4
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCH
Q 045105 83 FRMQAEGLEPNARTLSSVLPACARLQ-KLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGDM 145 (601)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 145 (601)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446667777766443 3445555555 6777888888888877666776666666777776643
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.10 E-value=1.3e+02 Score=27.00 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=41.6
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCC--hHHHHHHHHHHHHcCCCCCHhh
Q 045105 26 WNSVVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGY--DEEAIGMLFRMQAEGLEPNART 96 (601)
Q Consensus 26 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 96 (601)
...++.-|...|+.++|.+.++++.. ..-.....+..+..++-+.++ .+.+.+++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~--p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 45677778888888888888888743 111122344445555555432 3556777777776665544433
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.29 E-value=1.4e+02 Score=23.10 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 83 FRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
+.+++.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 345666777766432 3344555555 66788888888877766666666566666666663
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.86 E-value=1.4e+02 Score=23.46 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCC--HHHHHHHHHHHHhcC
Q 045105 132 VNGLVDVYRRCGDMLSALKIFSKFSIKN---EVSCNTIIVGYCENGN--VAEARELFDQMEHLG 190 (601)
Q Consensus 132 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g 190 (601)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 3455666667777777777777776552 1223333444443322 344555666665444
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.55 E-value=38 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHH
Q 045105 37 GLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAI 79 (601)
Q Consensus 37 ~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 79 (601)
.+.++|.++++.+.+. ...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~r-----G~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETR-----GSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTS-----CTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHc-----ChHHHHHHHHHHHHcCcHHHHH
Confidence 3567777777776553 3356777777776666655443
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.28 E-value=1.5e+02 Score=24.92 Aligned_cols=49 Identities=20% Similarity=0.087 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhhcCCCCCChh--h-----HHHHHHHHhhcCChHHHHHHHHHHHHc
Q 045105 39 VLEALECLERMSSLDNETPNLV--S-----WSAVIGGFTQNGYDEEAIGMLFRMQAE 88 (601)
Q Consensus 39 ~~~A~~~~~~m~~~~~~~~~~~--~-----~~~li~~~~~~~~~~~a~~~~~~m~~~ 88 (601)
.+.|+.+|+.+.+. ...++.. . --..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e-~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTE-FTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 57888888888874 2111111 1 113345677888888888888888754
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.32 E-value=2.9e+02 Score=25.15 Aligned_cols=211 Identities=11% Similarity=-0.015 Sum_probs=96.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 045105 28 SVVTACAANGLVLEALECLERMSSLDNETPN---LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLSSVLPAC 104 (601)
Q Consensus 28 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (601)
+.|...+..|+.+-+..+++. +..++ ..-++ .+...+..|+.+-+. .+.+.|..++...-...+...
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~d~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIET-----GVSPTIQNRFGCT-ALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTCCC-HHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHc-----CCCccccCCCCCc-HHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHHHH
Confidence 344555566887777766654 33232 22223 334445556654433 334444444432222233344
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCch--------------------HHHHHHHHHHHhcC--CHHHHHHHHhhcCCC---C
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSNP--------------------FVVNGLVDVYRRCG--DMLSALKIFSKFSIK---N 159 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~ 159 (601)
+..|+.+-+..+++.....|..++. .-. ..+...+..| +.+-+..+++.-..+ |
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASPTAKD 170 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence 4556766666666654444544333 112 2344445666 666666666553322 2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCC---eeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhh--
Q 045105 160 EVSCNTIIVGYCENGNVAEARELFDQMEH-LGVQRG---IISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFT-- 233 (601)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-- 233 (601)
..-. +.+...+..|+.+-+..+++.-.. .++.++ ..-.+.|. ..+..|..+-+.-++ + .|..++...
T Consensus 171 ~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll----~-~gad~~~~d~~ 243 (364)
T 3ljn_A 171 KADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFV----E-MGIDVNMEDNE 243 (364)
T ss_dssp TTSC-CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHH----T-TTCCTTCCCTT
T ss_pred CCCC-CHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHH----H-cCCCCCCCCCC
Confidence 2222 234444566776655555543221 000022 22233333 334566654333333 2 455444321
Q ss_pred HHHHHHHhcccCCHHHHHHHHHH
Q 045105 234 FGSVLIACADMNSLRKGKEIHAL 256 (601)
Q Consensus 234 ~~~ll~~~~~~~~~~~a~~~~~~ 256 (601)
-.+.+...+..|+.+-+..+++.
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHHHc
Confidence 11223344455777666666554
No 324
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.30 E-value=1.7e+02 Score=22.40 Aligned_cols=114 Identities=20% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNAR---TLSSVLPACA 105 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~ 105 (601)
.+...++.|+.+.+..+++. ........+..-++.| .. +..|+.+-+. .+.+.|..++.. -.+.+..+ +
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L-~~-~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A-~ 76 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTAL-QV-MMFGSTAIAL----ELLKQGASPNVQDTSGTSPVHDA-A 76 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHH-HH-SCTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH-H
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHH-HH-HHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHH-H
Confidence 34555667888888888777 2111222333333333 33 6666655433 333445444322 22222222 2
Q ss_pred hcCCcchHHHHHHHHHHhcCCCchH--HHHHHHHHHHhcCCHHHHHHHHhh
Q 045105 106 RLQKLSLGKEFHGYITRNGFMSNPF--VVNGLVDVYRRCGDMLSALKIFSK 154 (601)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 154 (601)
..|+. ++.+.+.+.|..++.. .-...+...+..|+.+-+.-+++.
T Consensus 77 ~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 77 RTGFL----DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HTTCH----HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HcCcH----HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 33433 3444455555443321 111223333445555555544444
No 325
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.04 E-value=1.7e+02 Score=28.65 Aligned_cols=58 Identities=16% Similarity=-0.027 Sum_probs=42.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 045105 506 LLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKMKDR 563 (601)
Q Consensus 506 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 563 (601)
|....+....++.|...|.++..+.|++-..|+.|+.+....|+.-+|.-.+-+..-.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 3333444556778888899999999988888888888888888887777665554433
No 326
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.94 E-value=1.2e+02 Score=24.24 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcC
Q 045105 212 DEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIAL--GLQSDTFVGGALVEMYCRYQ 280 (601)
Q Consensus 212 ~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 280 (601)
+.+++-+.+.++..|+.++..- ..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 4445555555554666665433 33445555555566677777777666 55555554444445555544
No 327
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.59 E-value=2.3e+02 Score=23.69 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHH---HcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch-----HHHHHHHHHHHhcCC
Q 045105 404 MLTAYA---MHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI-----KTGSEFFDLMAYYDV 464 (601)
Q Consensus 404 ll~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~ 464 (601)
+|.++. +..+.+.|+-++-+|++.|-.|....-..++-+...-|.- ..|...++.....|.
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 444443 4578999999999999999888777777777776655532 234444444445553
No 328
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.48 E-value=1.7e+02 Score=22.16 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCC--HHHHHHHHHHHHhcC
Q 045105 133 NGLVDVYRRCGDMLSALKIFSKFSIKN---EVSCNTIIVGYCENGN--VAEARELFDQMEHLG 190 (601)
Q Consensus 133 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g 190 (601)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 455666666777777777777776552 1223333344444322 244556666665444
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=29.20 E-value=3.9e+02 Score=25.68 Aligned_cols=132 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 045105 116 FHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS---IKNEVSCNTIIVGYCENGNVAEARELFDQMEHLGVQ 192 (601)
Q Consensus 116 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 192 (601)
.+....+.|++--...|..-.+.+...|++++|-++-..-+ -++..|.+.+-.+=...|+..--+.+|..+.+.| +
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~ 426 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-Q 426 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-c
Q ss_pred CCeeehHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHH
Q 045105 193 RGIISWNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALA 257 (601)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (601)
.+..---.+++.....|+.+-..+++.+ ..+..+...=..+ +..+...|..+|.+.
T Consensus 427 Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 427 LNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred cchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHhHhhh-----hhcCHHHHHHHHHHc
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.52 E-value=3.7e+02 Score=28.97 Aligned_cols=51 Identities=6% Similarity=-0.049 Sum_probs=26.4
Q ss_pred HHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHhhhcCChHHHHHHHHhC
Q 045105 439 ALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 439 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 494 (601)
++..|...|.++-+.++... .+.++..--.+..+|...|++++|...|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555655554443322 1222222223455666777777777777666
No 331
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.40 E-value=61 Score=20.58 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCCCCeeehHHHHHHH
Q 045105 177 AEARELFDQMEHLGVQRGIISWNSMISGY 205 (601)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 205 (601)
++|.+.|.+|+...-.++..+|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555554332234445555555555
No 332
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=27.56 E-value=1.8e+02 Score=26.50 Aligned_cols=42 Identities=12% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 045105 115 EFHGYITRNGFMSNPFVVNGLVDVYRRCGDMLSALKIFSKFS 156 (601)
Q Consensus 115 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 156 (601)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++++.+.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l 255 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFC 255 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 355666667777777776666666666666777777776655
No 333
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.50 E-value=6e+02 Score=27.24 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=15.8
Q ss_pred ehHHHHHHHHhCCChhHHHHHHHHHH
Q 045105 197 SWNSMISGYVDNSLYDEAFSMFRDLL 222 (601)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~~~ 222 (601)
-|..+++++.+.++.+.+.++|.++.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555666666666666666666654
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.92 E-value=2e+02 Score=22.17 Aligned_cols=35 Identities=3% Similarity=-0.121 Sum_probs=14.0
Q ss_pred CChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc
Q 045105 412 GHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446 (601)
Q Consensus 412 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (601)
+..-.|.++++.+.+.+...+..|.-.-++.+...
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 33344444444444443333333333333333333
No 335
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.91 E-value=2.4e+02 Score=22.38 Aligned_cols=69 Identities=7% Similarity=0.017 Sum_probs=45.9
Q ss_pred HHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCCH
Q 045105 76 EEAIGMLF-RMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRN--GFMSNPFVVNGLVDVYRRCGDM 145 (601)
Q Consensus 76 ~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~ 145 (601)
+.+.+-+. .+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444343 4556687776643 45566777777788899999998887 6666766666666777776643
No 336
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.20 E-value=4.1e+02 Score=24.91 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=78.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCChh--hHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH---hhHHHHHHH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPNLV--SWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA---RTLSSVLPA 103 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~ 103 (601)
.+...+..|+.+-+..+++. +..|+.. ...+.+...+..|+.+-+.-++ +.|..++. ...+. +..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~ 86 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTP-LHC 86 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCH-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCH-HHH
Confidence 45556667888777766665 3333322 1123344455667765444444 34444332 11222 333
Q ss_pred HHhcCCcchHHHHHHHHHHhcCCCchHH--HHHHHHHHHhcCCHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCHHH
Q 045105 104 CARLQKLSLGKEFHGYITRNGFMSNPFV--VNGLVDVYRRCGDMLSALKIFSKFSIKN---EVSCNTIIVGYCENGNVAE 178 (601)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 178 (601)
.+..|+. ++++.+.+.|..++... -...+...+..|+.+-+..+++.-...+ ...+ +.+...+..|+.+-
T Consensus 87 A~~~g~~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 87 AARIGHT----NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRV 161 (437)
T ss_dssp HHHHTCH----HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHH
T ss_pred HHHCCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHH
Confidence 3444554 35555666665544221 1223445566788887777776544321 1112 23444556676654
Q ss_pred HHHHHHHHHhcCCCCCee---ehHHHHHHHHhCCChh
Q 045105 179 ARELFDQMEHLGVQRGII---SWNSMISGYVDNSLYD 212 (601)
Q Consensus 179 a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~ 212 (601)
+.- +.+.|..++.. ..+. +...+..|+.+
T Consensus 162 v~~----Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~ 193 (437)
T 1n11_A 162 AEL----LLERDAHPNAAGKNGLTP-LHVAVHHNNLD 193 (437)
T ss_dssp HHH----HHHTTCCTTCCCSSCCCH-HHHHHHTTCHH
T ss_pred HHH----HHhCCCCCCCCCCCCCCH-HHHHHHcCCHH
Confidence 433 33444444332 2223 33344556554
No 337
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.95 E-value=1.1e+02 Score=26.19 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=16.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCCCCC
Q 045105 66 IGGFTQNGYDEEAIGMLFRMQAEGLEPN 93 (601)
Q Consensus 66 i~~~~~~~~~~~a~~~~~~m~~~~~~p~ 93 (601)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3444566677766666666666655444
No 338
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.66 E-value=3.3e+02 Score=23.27 Aligned_cols=28 Identities=11% Similarity=-0.170 Sum_probs=20.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHhh
Q 045105 263 QSDTFVGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
.++.......+..+.+.|+.++|.++|-
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 3344555666777888888888888876
No 339
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.59 E-value=1.6e+02 Score=19.73 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=37.5
Q ss_pred HHhCCCCCCHhHHHHHHHHhcCCC-chhhHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCh
Q 045105 323 MLSLDLTPDIYTVGIILSACSSLA-TMERGKQVHAYAIRCGYDSDVHIGTALVDMYAKCGSL 383 (601)
Q Consensus 323 ~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 383 (601)
+.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-+
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4456666665443 3445555544 5667778888887776666666666666666666543
No 340
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.32 E-value=3e+02 Score=22.72 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=8.4
Q ss_pred HHHhhcCChHHHHHHHHH
Q 045105 67 GGFTQNGYDEEAIGMLFR 84 (601)
Q Consensus 67 ~~~~~~~~~~~a~~~~~~ 84 (601)
...++.|+.+....++..
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 333445555555544443
No 341
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.10 E-value=1.3e+02 Score=21.36 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=24.4
Q ss_pred CHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 045105 144 DMLSALKIFSKFSIKNEVSCNTIIVGYCENGNVAEAR 180 (601)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (601)
..++|.++++.+..+...+|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 5677777777777666677777777776556554443
No 342
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.05 E-value=3.3e+02 Score=23.04 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHCCCCccH-HhHHHHHHHHhccCchHHHHHHHHHHHhcCCCc
Q 045105 415 KEGIAHFRRILASGFRPDH-ISFLSALSACVHAGSIKTGSEFFDLMAYYDVKP 466 (601)
Q Consensus 415 ~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (601)
+.+..+|..|...|+--.. .-|......+...|++.+|..+|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666777777777654433 356666666667777777777776555555555
No 343
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.03 E-value=3.1e+02 Score=22.76 Aligned_cols=207 Identities=12% Similarity=-0.055 Sum_probs=99.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCCC---hhhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCH---hhHHHHHH
Q 045105 29 VVTACAANGLVLEALECLERMSSLDNETPN---LVSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNA---RTLSSVLP 102 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~ 102 (601)
.+...+..|+.+-+..+++. +..++ ...++ .+...+..|+.+-+ +.+.+.|..++. ...+.+ .
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~ 82 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQA-----GANIDTCSEDQRT-PLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCL-H 82 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHH-H
T ss_pred HHHHHHHcCcHHHHHHHHHc-----CCCcCccCCCCCC-HHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHH-H
Confidence 34455666777655555544 22222 22222 33444555665433 344445544432 222222 2
Q ss_pred HHHhcCCcchHHHHHHHHHHhc-CCCchH--HHHHHHHHHHhcCCHHHHHHHHhhcCCCCch--hHHHHHHHHHhcCCHH
Q 045105 103 ACARLQKLSLGKEFHGYITRNG-FMSNPF--VVNGLVDVYRRCGDMLSALKIFSKFSIKNEV--SCNTIIVGYCENGNVA 177 (601)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~g-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~ 177 (601)
..+..|+. ++++.+.+.| ..++.. .-...+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+
T Consensus 83 ~A~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 83 LAAKKGHY----EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp HHHHTTCH----HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH
T ss_pred HHHHcCCH----HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH
Confidence 33334443 4555555555 222211 1112344455667777777666654332211 1112334444556654
Q ss_pred HHHHHHHHHHhcCCCCCeee---hHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCChh--hHHHHHHHhcccCCHHHHHH
Q 045105 178 EARELFDQMEHLGVQRGIIS---WNSMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSF--TFGSVLIACADMNSLRKGKE 252 (601)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 252 (601)
+++.+.+.|..++... .+ .+...++.|+.+-+.-++ + .|..++.. .-.+.+......|+...+.+
T Consensus 159 ----~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 159 ----IAEILLAAKCDLHAVNIHGDS-PLHIAARENRYDCVVLFL----S-RDSDVTLKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp ----HHHHHHTTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH----T-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCcCCCCCC-HHHHHHHhCCHhHHHHHH----H-cCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4444555565554322 22 344445667665443333 2 55555432 12334556677888888888
Q ss_pred HHHHHHHc
Q 045105 253 IHALAIAL 260 (601)
Q Consensus 253 ~~~~~~~~ 260 (601)
+.+.+.++
T Consensus 229 l~~~l~ds 236 (237)
T 3b7b_A 229 MSKALQDS 236 (237)
T ss_dssp HHHHHHHC
T ss_pred HHHHhhcc
Confidence 88887653
No 344
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.99 E-value=3.1e+02 Score=22.71 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=10.4
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 045105 30 VTACAANGLVLEALECLER 48 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~ 48 (601)
+...++.|+.+.+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3444556666655555543
No 345
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.93 E-value=2.4e+02 Score=22.49 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 045105 164 NTIIVGYCENGNVAEARELFDQME 187 (601)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~ 187 (601)
..++.-|...|+.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555555555555555544
No 346
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.85 E-value=1.2e+02 Score=19.70 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhcc
Q 045105 400 SQNAMLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHA 446 (601)
Q Consensus 400 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 446 (601)
.++.++..++...-.++++..+++..+.| ..+..+|.--.+.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45667777777777888888888888887 55556665555555543
No 347
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.71 E-value=2.9e+02 Score=22.29 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=8.1
Q ss_pred HHHHHHHHHCCCCcc
Q 045105 418 IAHFRRILASGFRPD 432 (601)
Q Consensus 418 ~~~~~~m~~~~~~p~ 432 (601)
..+-.++...|+.++
T Consensus 87 ~~I~~eL~~KGI~~~ 101 (177)
T 3e3v_A 87 KVIKLNLSKKGIDDN 101 (177)
T ss_dssp HHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 444556666665443
No 348
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.69 E-value=2.6e+02 Score=23.49 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=11.7
Q ss_pred HhhhcCChHHHHHHHHhC
Q 045105 477 LLSRAGELGEAYEFIKKI 494 (601)
Q Consensus 477 ~~~~~g~~~~A~~~~~~~ 494 (601)
.|.+.|.+++|.+++++.
T Consensus 123 VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 455666666676666665
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.35 E-value=2.3e+02 Score=22.52 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--CeeehHHHHH------HHHhCCChhHHHHHHHHHHH
Q 045105 173 NGNVAEARELFDQMEHLGVQR--GIISWNSMIS------GYVDNSLYDEAFSMFRDLLM 223 (601)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~ 223 (601)
.|++-+|-++|+..-.....+ ....|..||+ ...+.|++..|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 367777777777765543333 3445556665 22456777777777776654
No 350
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.15 E-value=6.1e+02 Score=25.81 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=44.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-
Q 045105 200 SMISGYVDNSLYDEAFSMFRDLLMRDGIEPTSFTFGSVLIACADMNSLRKGKEIHALAIALGLQSDTFVGGALVEMYCR- 278 (601)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 278 (601)
....++.-.|+++.|++++-.. ...+..++.+.+..+.-.+- ... +..........-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~-----~~vdAVH~AIaL~~~gLL~~---~~~----lls~~~~~~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF-----SEMDAVHLAIGLASLKLFKI---DSS----TRLTKKPKRDIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT-----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc-----CchhHHHHHHHHHHcCCccC---CCc----ccccCCCcccccHHHHHHHHHHH
Confidence 3566777899999999988642 34567777777766543332 111 1111000112235677777765
Q ss_pred --cCCHHHHHHHhh
Q 045105 279 --YQDLVAAQMAFD 290 (601)
Q Consensus 279 --~g~~~~a~~~~~ 290 (601)
..++..|.+.|-
T Consensus 367 F~~td~~~Al~Y~~ 380 (661)
T 2qx5_A 367 FRYSDPRVAVEYLV 380 (661)
T ss_dssp TTTTCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH
Confidence 578888888776
No 351
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.93 E-value=3.6e+02 Score=23.14 Aligned_cols=189 Identities=8% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCC------ChhhHHHHHHHHhh--cCChHHHHHHHHH----------HHHc
Q 045105 27 NSVVTACAANGLVLEALECLERMSSLDNETP------NLVSWSAVIGGFTQ--NGYDEEAIGMLFR----------MQAE 88 (601)
Q Consensus 27 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~------~~~~~~~li~~~~~--~~~~~~a~~~~~~----------m~~~ 88 (601)
...+...++.|+.+.+..+++.....+.... +..-++.|..+... .|+.+-+.-+++. +...
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Q ss_pred CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHH----------------HHHHHHHHHhcCCHHHHHHHH
Q 045105 89 GLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFV----------------VNGLVDVYRRCGDMLSALKIF 152 (601)
Q Consensus 89 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~ 152 (601)
-...|..-.+.|..++.... .++.+.+++.|..++... -.+.+...+..|+.+-+.-++
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRN-----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Q ss_pred h------hcCCCCchhHHHHHHHHHhcCCHHHH----HHHHHHHHhcCCCCC---------eeehHHHHHHHHhCCChhH
Q 045105 153 S------KFSIKNEVSCNTIIVGYCENGNVAEA----RELFDQMEHLGVQRG---------IISWNSMISGYVDNSLYDE 213 (601)
Q Consensus 153 ~------~~~~~~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~g~~~~---------~~~~~~li~~~~~~~~~~~ 213 (601)
+ .+...|..-.+.|..+.........- .++++.+.+.|..++ ...-..-+...+..|..+-
T Consensus 169 ~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 169 QNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred hcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHH
Q ss_pred HHHHHHH
Q 045105 214 AFSMFRD 220 (601)
Q Consensus 214 a~~~~~~ 220 (601)
+.-+++.
T Consensus 249 v~~Ll~~ 255 (273)
T 2pnn_A 249 LAYILQR 255 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
No 352
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.85 E-value=3e+02 Score=22.16 Aligned_cols=94 Identities=18% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCCCh-hhHHHHHHHHhhcCChHHHHHHHHHHHHcCCCCCHhhHH----HHHHHH
Q 045105 30 VTACAANGLVLEALECLERMSSLDNETPNL-VSWSAVIGGFTQNGYDEEAIGMLFRMQAEGLEPNARTLS----SVLPAC 104 (601)
Q Consensus 30 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~ 104 (601)
+...++.|+++....++.. +..... ..-.+.+...+..|+.+.-.++.+.+.+.|..++...-. ..+-+.
T Consensus 10 l~~Aa~~g~~~~~~~l~~~-----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEK-----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHH-----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc-----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q ss_pred HhcCCcchHHHHHHHHHHhcCCCc
Q 045105 105 ARLQKLSLGKEFHGYITRNGFMSN 128 (601)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~g~~~~ 128 (601)
....+.....++.+.+++.|..++
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred cCCcchhhHHHHHHHHHHCCCCCC
No 353
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.80 E-value=4.1e+02 Score=23.73 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHhh
Q 045105 251 KEIHALAIALGLQSDTF--VGGALVEMYCRYQDLVAAQMAFD 290 (601)
Q Consensus 251 ~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~ 290 (601)
..+.+.+.+.|..++.. ...+.+...+..|..+.+..++.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 34445556666655432 12233445566777666554443
No 354
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.44 E-value=1.8e+02 Score=26.49 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHHHHHHhcCCCcCchHHHHHHHHh---hhcCChHHHHHHHHhCC
Q 045105 419 AHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFFDLMAYYDVKPSLKHYTCMVDLL---SRAGELGEAYEFIKKIP 495 (601)
Q Consensus 419 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~ 495 (601)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|...-..+.-+++..+ .-..+.++...+++.++
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp 293 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 355666777888888888888887877777888888887777766321111111222221 12245666777777664
No 355
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.00 E-value=1.8e+02 Score=21.96 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=29.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCch
Q 045105 404 MLTAYAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSI 449 (601)
Q Consensus 404 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (601)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4455555566677777777777766555666665566666665543
No 356
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.91 E-value=2.4e+02 Score=20.81 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=36.3
Q ss_pred ChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccCchHHHHHHH-HHHHhcCCCcCchHHHHHHHHhhhcCCh
Q 045105 413 HGKEGIAHFRRILASGFRPDHISFLSALSACVHAGSIKTGSEFF-DLMAYYDVKPSLKHYTCMVDLLSRAGEL 484 (601)
Q Consensus 413 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 484 (601)
.+.+|+.-+++.... .+|......++..+... ++.+.++. +.+...|+ .+.++.-.++.+.+.|-.
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCC
Confidence 355666666666543 45666666666665544 45556655 33333555 344555555555555544
No 357
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.64 E-value=4.5e+02 Score=23.73 Aligned_cols=106 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHh----cCCHHHHHHHHhh-
Q 045105 80 GMLFRMQAEGLEPNARTLSSVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRR----CGDMLSALKIFSK- 154 (601)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~- 154 (601)
+++..+.+.|+.|...++.-++..+++.=.++.+.++++.+...|...-..+..+++..+.. ..+.+....++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 045105 155 FSIKNEVSCNTIIVGYCENGNVAEARELFDQ 185 (601)
Q Consensus 155 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 185 (601)
.+..+......++.-........+..++=.+
T Consensus 289 ~p~~~~~di~~li~~A~~l~~s~~l~~~e~e 319 (331)
T 3qye_A 289 LPNLGLVQMEKTINQVFEMDIAKQLQAYEVE 319 (331)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCchHHHHHHHHH
No 358
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.46 E-value=1.8e+02 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=46.4
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 045105 484 LGEAYEFIKKIPMAPDSVMWGALLGGCVSHGNLEFGQIAADRLIELEPNNTGNYVMLANLFAYAG 548 (601)
Q Consensus 484 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 548 (601)
.+.|.++++-|+ ...............|++..|.++++.+...+|+|..+...++.+|.+.|
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345666677665 22222334455667899999999999999999999999999999887765
No 359
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.93 E-value=3e+02 Score=21.39 Aligned_cols=40 Identities=10% Similarity=-0.101 Sum_probs=17.5
Q ss_pred HHHcCChhhHHHHHHHHHHCCCCccHHhHHHHHHHHhccC
Q 045105 408 YAMHGHGKEGIAHFRRILASGFRPDHISFLSALSACVHAG 447 (601)
Q Consensus 408 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 447 (601)
+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 36 l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 36 LYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344445555555544443344444333344444433
No 360
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.87 E-value=2e+02 Score=21.72 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=24.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Q 045105 100 VLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCG 143 (601)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 143 (601)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555666666666666655555555555555555554
No 361
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.62 E-value=3.1e+02 Score=23.25 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=15.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc
Q 045105 29 VVTACAANGLVLEALECLERMSSL 52 (601)
Q Consensus 29 ll~~~~~~~~~~~A~~~~~~m~~~ 52 (601)
.+...++.|+.+.+..+++.+.+.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~ 28 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWN 28 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345556677777766666665554
No 362
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.54 E-value=1.9e+02 Score=22.12 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC
Q 045105 99 SVLPACARLQKLSLGKEFHGYITRNGFMSNPFVVNGLVDVYRRCGD 144 (601)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 144 (601)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555555666777777777766655666655555566666553
No 363
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=20.13 E-value=1.6e+02 Score=17.87 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCHHHHHHHHHHH
Q 045105 521 IAADRLIELEPNNTGNYVMLANLFAYAGRWSDLARTRQKM 560 (601)
Q Consensus 521 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 560 (601)
.-.+.+.++.|+ ......---+-...|+.+.|...+-.|
T Consensus 6 ~~v~~L~EMFP~-~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPA-ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSS-SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 334555566662 222222221224457777777765554
No 364
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.11 E-value=3.7e+02 Score=22.20 Aligned_cols=28 Identities=4% Similarity=0.082 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 045105 538 VMLANLFAYAGRWSDLARTRQKMKDRRM 565 (601)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~l~~~~~~~~ 565 (601)
...+.+|.+.|.+++|.++|++.-+...
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~~ 148 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDPN 148 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCCC
Confidence 4467789999999999999999765543
Done!