BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045108
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L++I
Sbjct: 135 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 192
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
+ I + NY AW HR W++ ++ R W L D
Sbjct: 193 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 232
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 233 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 287
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 288 QDRGLSRY 295
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
+ I + NY AW HR W++ ++ R W L D
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 229
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 230 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 285 QDRGLSRY 292
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L++I
Sbjct: 88 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 145
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
+ I + NY AW HR W++ ++ R W L D
Sbjct: 146 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 185
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 186 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 240
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 241 QDRGLSRY 248
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ K L L +E+ ++ PK+ Q W HRR ++ + R+ S
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY 250
+E E + I + NY AW HR W V+ E K N L D
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQW---------VIQEFKLWDN--ELQYVDQLLKED 230
Query: 251 HRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------LH 304
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 231 VRNNSVWNQRYFVI---SNTTGY--NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285
Query: 305 RRFLSLY 311
R LS Y
Sbjct: 286 DRGLSKY 292
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 39/184 (21%)
Query: 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206
P+ ++ V + +S K + + R V+ R+ ER +L E +
Sbjct: 77 PVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERS--------ERAFKLTRDAIELNA 128
Query: 207 MNYRAWNHRCWLVSFMTRE--QVLNEL-----KQSRNWSGLHVADNSCFHYHRRLMI-W- 257
NY W+ R L+ + ++ + +N + +Q +N+ H HRR+++ W
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH---------HRRVLVEWL 179
Query: 258 -----NLEGFCHIQDNNSSGY--------FVETYQVWKEELDWNESLIKRYVGREALWLH 304
LE I + ++ Y ++ +++W EL + + L+K V ++W
Sbjct: 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239
Query: 305 RRFL 308
R F+
Sbjct: 240 RYFV 243
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ K L L +E+ ++ PK+ Q W HRR ++ + R+ S
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLV 219
+E E + I + NY AW HR W++
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQWVI 210
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 132 AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191
W+ R+++V + L EL A +L+ K+ AW HR+WVI +
Sbjct: 168 VWHHRRVLV---EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK--------LW 216
Query: 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223
+ E + V+++ + N WN R +++S T
Sbjct: 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 39/184 (21%)
Query: 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206
P+ ++ V + +S K + + R V+ R+ ER +L E +
Sbjct: 77 PVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERS--------ERAFKLTRDAIELNA 128
Query: 207 MNYRAWNHRCWLVSFMTRE--QVLNEL-----KQSRNWSGLHVADNSCFHYHRRLMI-W- 257
NY W+ R L+ + ++ + +N + +Q +N+ H HRR+++ W
Sbjct: 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH---------HRRVLVEWL 179
Query: 258 -----NLEGFCHIQDNNSSGY--------FVETYQVWKEELDWNESLIKRYVGREALWLH 304
LE I + ++ Y ++ +++W EL + + L+K V ++W
Sbjct: 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239
Query: 305 RRFL 308
R F+
Sbjct: 240 RYFV 243
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L++I
Sbjct: 134 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 191
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
+ I + NY AW HR W++ ++ R W L D
Sbjct: 192 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 231
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 232 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 286
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 287 QDRGLSRY 294
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
+ I + NY AW HR W++ ++ R W L D
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 229
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 230 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 285 QDRGLSRY 292
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L
Sbjct: 79 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 133
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
E + I + NY AW HR W++ ++ R W L D
Sbjct: 134 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 176
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 177 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 231
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 232 QDRGLSRY 239
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L
Sbjct: 78 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
E + I + NY AW HR W++ ++ R W L D
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 175
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 176 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 231 QDRGLSRY 238
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L
Sbjct: 79 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 133
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
E + I + NY AW HR W++ ++ R W L D
Sbjct: 134 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 176
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 177 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 231
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 232 QDRGLSRY 239
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L
Sbjct: 78 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
E + I + NY AW HR W++ ++ R W L D
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 175
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 176 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 231 QDRGLSRY 238
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L
Sbjct: 78 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQEL--- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
E + I + NY AW HR W++ ++ R W L D
Sbjct: 133 -----EFIADILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 175
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 176 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 231 QDRGLSRY 238
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 133 WNSRKLIV------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST 186
WN R+LI+ +N P E + +LS PK+ WS+R+W+++ +
Sbjct: 106 WNYRQLIIGQIMELNNNDFDP--YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163
Query: 187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
+E V+K+ + N AW+HR +L+
Sbjct: 164 ------KELSFVDKVIDTDLKNNSAWSHRFFLL 190
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 131 TAWNSRKLIVSNKQLLPI--LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ 188
T W R I+ N LP L DEL + + K+ Q W++R+ +I I +
Sbjct: 68 TIWIYRFNILKN---LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME-LNNND 123
Query: 189 WIIERESELVEKIAERSKMNYRAWNHRCWLV 219
+ RE +++E + N+ W++R WLV
Sbjct: 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLV 154
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSA 157
K Q + V+ + +L + DFAT WN R+ ++ S ++ ++ EL
Sbjct: 42 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 101
Query: 158 VVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
L +PKS W HR W+++ + W RE EL + E + N+ W++R
Sbjct: 102 SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 153
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + S + +++ E +E + +Y
Sbjct: 53 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 112
Query: 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 113 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 154
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSA 157
K Q + V+ + +L + DFAT WN R+ ++ S ++ ++ EL
Sbjct: 40 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 99
Query: 158 VVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
L +PKS W HR W+++ + W RE EL + E + N+ W++R
Sbjct: 100 SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 151
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + S + +++ E +E + +Y
Sbjct: 51 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 110
Query: 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 111 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 152
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSA 157
K Q + V+ + +L + DFAT WN R+ ++ S ++ ++ EL
Sbjct: 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 98
Query: 158 VVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
L +PKS W HR W+++ + W RE EL + E + N+ W++R
Sbjct: 99 SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 150
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + S + +++ E +E + +Y
Sbjct: 50 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 109
Query: 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 151
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 105 KSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSA 157
K Q + V+ + +L + DFAT WN R+ ++ S ++ ++ EL
Sbjct: 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE 97
Query: 158 VVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
L +PKS W HR W+++ + W RE EL + E + N+ W++R
Sbjct: 98 SCLRVNPKSYGTWHHRCWLLSRLPEP----NWA--RELELCARFLEADERNFHCWDYR 149
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + S + +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 150
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++ ++ EL L +PKS W HR W+++ +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWA--RELELCARFLEADERNFHCWDYR 149
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 150 MDE--LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERS 205
+DE L L++ +L +P W+ RR V+ + S + +++ E +E +
Sbjct: 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103
Query: 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
+Y W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 150
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++ ++ EL L +PKS W HR W+++ +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWA--RELELCARFLEADERNFHCWDYR 149
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 150 MDE--LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERS 205
+DE L L++ +L +P W+ RR V+ + S + +++ E +E +
Sbjct: 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103
Query: 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
+Y W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 150
>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
Length = 349
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/80 (18%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L L+ +++ +P W +R ++ ++++ +E E L+ + A ++ +Y+ W
Sbjct: 74 LELTEIIVRMNPAHYTVWQYRFSLLTSLNKS-------LEDELRLMNEFAVQNLKSYQVW 126
Query: 213 NHRCWLVSFMTREQVLNELK 232
+HR L+ ++ + ++E++
Sbjct: 127 HHRLLLLDRISPQDPVSEIE 146
>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 349
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/80 (18%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L L+ +++ +P W +R ++ ++++ +E E L+ + A ++ +Y+ W
Sbjct: 73 LELTEIIVRMNPAHYTVWQYRFSLLTSLNKS-------LEDELRLMNEFAVQNLKSYQVW 125
Query: 213 NHRCWLVSFMTREQVLNELK 232
+HR L+ ++ + ++E++
Sbjct: 126 HHRLLLLDRISPQDPVSEIE 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,551,271
Number of Sequences: 62578
Number of extensions: 489331
Number of successful extensions: 1006
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 64
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)