BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045108
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3KPW7|PTAR1_DANRE Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Danio rerio GN=ptar1 PE=2 SV=1
Length = 426
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 123/276 (44%), Gaps = 47/276 (17%)
Query: 119 SKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN 178
+ LLLL+ DF TAWN RK ++ L P +L L + LS PKS + W HRRWV+
Sbjct: 91 TSTLLLLNPDFTTAWNVRKELLQCGVLNP--EKDLYLGKLALSKHPKSPETWIHRRWVLQ 148
Query: 179 MISRNCST-----------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF 221
+ + CS LQ ++ E + + A R NY AW+HR W++
Sbjct: 149 RLQKECSPSGQELKDSAESRRQCERLQRALQEEMRVCAEAAGRYPSNYNAWSHRIWVLQN 208
Query: 222 MTRE--QVL-NELKQSRNWSGLHVADNSCFHYHRRLMIW-------------------NL 259
M + +VL +EL +R W +HV+D+S FHY + L+ N
Sbjct: 209 MAKGNLKVLHDELSSTRLWVSMHVSDHSGFHYRQHLLKALAKELSPAAEKDVHTSQQPNG 268
Query: 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATH 319
E D+N + +++ EE+ LI+ Y G E LW HRR + + H
Sbjct: 269 ENTATASDDNHHKDVMP--RLFHEEIQLCTDLIESYPGHETLWCHRRHVFYLWHQWRREH 326
Query: 320 LLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTI 355
+ G QS D+ L+ ELC +S S +
Sbjct: 327 MQGAGSQSPALTHTDV----LLSKELCDNNSISQAM 358
>sp|Q7Z6K3|PTAR1_HUMAN Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Homo sapiens GN=PTAR1 PE=2 SV=2
Length = 402
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 44/237 (18%)
Query: 121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
LLLL+ DF TAWN RK ++ + L PI +L L + L+ PKS + W HRRWV+ +
Sbjct: 93 TLLLLNPDFTTAWNVRKELILSGTLNPI--KDLHLGKLALTKFPKSPETWIHRRWVLQQL 150
Query: 181 SR-----------NCSTL-----QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
+ N T+ Q +I+ E E+ + A R NY AW+HR W++ + +
Sbjct: 151 IQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAK 210
Query: 225 EQV---LNELKQSRNWSGLHVADNSCFHYHRRLM------------------IWNLEGFC 263
V L+EL +++W+ +HV+D+S FHY + L+ + +
Sbjct: 211 LDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEPALV 270
Query: 264 HIQDNNSSGYFVETY----QVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHI 316
+D ++ E + +EE++++ LI Y G E LW HRR + YL H+
Sbjct: 271 PPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHI-FYLQHHL 326
>sp|Q0IHB3|PTR1A_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-A OS=Xenopus laevis GN=ptar1-a PE=2 SV=1
Length = 432
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 43/227 (18%)
Query: 121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN-- 178
LLLL+ DF TAWN RK ++ + L P+ +L+L + L+ PKS + W HRRW +
Sbjct: 93 TLLLLNPDFTTAWNVRKELIQSGTLNPV--KDLQLGKLALTKFPKSPETWIHRRWALQRL 150
Query: 179 --------------MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224
+ +Q I+E E + + A R NY +W+HR W+V +
Sbjct: 151 VQELVVAAVVDKDAICPETSERIQAIVEEEMHVCCEAAGRYPSNYNSWSHRIWVVQHLGN 210
Query: 225 EQ---VLNELKQSRNWSGLHVADNSCFHYHRRL--------------------MIWNLEG 261
+ +++EL +++W +HV+D+S FHY + L +I N E
Sbjct: 211 LKATLLIDELSSTKHWVSMHVSDHSGFHYRQFLLKSLLSKTLKDFDNVGAITDLIANEEN 270
Query: 262 FCHIQDN--NSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306
C +D N + + + +EE+D N L+ + G E LW HRR
Sbjct: 271 LCLPRDGEANWNQICFDLPYLLEEEMDLNRELVDSFPGHETLWCHRR 317
>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1
Length = 431
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 156/350 (44%), Gaps = 80/350 (22%)
Query: 27 DPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGIST---QILIPVYK 83
+P IDE+G I P AT + + + ++KLG+ + + L+P
Sbjct: 25 NPNIDEIGLI-PCPEAT---------------YNRSPIVLVENKLGVESWCIKFLLPYV- 67
Query: 84 AAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK 143
H + RQ K N +D+ + + + LLLL+ DF TAWN RK ++ +
Sbjct: 68 ---HNKLLLYRQKKLWLN-----RDELIDV-----TCTLLLLNPDFTTAWNVRKELIQSG 114
Query: 144 QLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR------------NCST----L 187
L P+ +L+L + L+ PKS + W HRRWV+ + + C +
Sbjct: 115 TLNPV--KDLQLGKLALTKFPKSPETWIHRRWVLQRVVQELVVAAVVGKDATCPETYERI 172
Query: 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV---LNELKQSRNWSGLHVAD 244
Q I++ E + + A R NY +W+HR W++ + V ++EL +++W +HV+D
Sbjct: 173 QTIVQEEMHVCYEAAGRYPSNYNSWSHRIWVIQHLGNLNVKLLIDELSSTKHWVSMHVSD 232
Query: 245 NSCFHYHRRL--------------------MIWNLEGFCHIQDNNS--SGYFVETYQVWK 282
+S FHY + L +I N + C ++ + + + + +
Sbjct: 233 HSGFHYRQFLLKSLLCKTLKDSDNVTAVPDLIANEKNPCLPREGEAIWNQICFDLPYLLE 292
Query: 283 EELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKAS 332
EE+ N L+ Y G E LW HRR + K I LL S + P+++
Sbjct: 293 EEMKLNRELLDSYPGHETLWCHRR----QIFKLIHQLLLEQSQSATPQST 338
>sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3
SV=1
Length = 322
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI 177
H +L S F N + I+ +K+ ++D L V+ +P + W +RR V+
Sbjct: 32 HPICPILYSEVFKDKMNYFRAILKSKEKSLRVLD---LLEEVIQENPSNYTIWYYRREVL 88
Query: 178 NMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNW 237
I ++ T+++ I++E L+ + E NY+ WNHR F+ + + ++ K+
Sbjct: 89 KAIEQD-ETIEYDIQQEMNLLNDMGETDPKNYQIWNHR----RFIVEKYIGSDNKEKEFL 143
Query: 238 SGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG 297
SG+ + D +H + H Q + ++TY+ W EL + L+
Sbjct: 144 SGVLLEDAKNYH-----------AWSHRQ------WLLKTYRDWNGELAMVDKLLSLDHR 186
Query: 298 REALWLHRRFL 308
++W HR F+
Sbjct: 187 NNSVWNHRFFV 197
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 133 WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192
WN R+ IV K + ++ LS V+L + K+ AWSHR+W++ + W
Sbjct: 122 WNHRRFIVE-KYIGSDNKEKEFLSGVLLEDA-KNYHAWSHRQWLLK------TYRDW--N 171
Query: 193 RESELVEKIAERSKMNYRAWNHRCWLVS 220
E +V+K+ N WNHR +++S
Sbjct: 172 GELAMVDKLLSLDHRNNSVWNHRFFVIS 199
>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans
GN=BET4 PE=3 SV=1
Length = 371
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Query: 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNK---------QLLP-ILMDELRLSAVVLSHS 163
E +I + LL+++ +F T WN R+ I+ N Q+ IL +L V L
Sbjct: 48 EALIKTNELLIINPEFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKF 107
Query: 164 PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223
PK W+HRRW++ + + + W + E +V K+ + + N+ W++R ++V M
Sbjct: 108 PKCYWIWNHRRWLLFELVK-LGKVNW--KYEFGVVSKLLDLDQRNFHGWHYRRFVVKNME 164
Query: 224 RE 225
E
Sbjct: 165 LE 166
>sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1
Length = 346
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W R++++ + L L +EL+ + + K+ Q W HRRW+ + + T
Sbjct: 79 TVWQFRRVVL--EALGVDLREELKFVDRIAGENTKNYQIWHHRRWLAEKLGADAVT---- 132
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM 222
E E +KI + NY AW+HR W++ +
Sbjct: 133 --NELEFTKKIFSQDAKNYHAWSHRQWVLQAL 162
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L+L+ + +P + W RR V+ + + + E + V++IA + NY+ W
Sbjct: 64 LQLTGEAIQLNPGNYTVWQFRRVVLEALGVD-------LREELKFVDRIAGENTKNYQIW 116
Query: 213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY--HRRLMIWNLEGFCHIQDNNS 270
+HR WL + + V NEL+ ++ + D +H HR+ ++ L G
Sbjct: 117 HHRRWLAEKLGADAVTNELEFTKK---IFSQDAKNYHAWSHRQWVLQALGG--------- 164
Query: 271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308
W++EL + + L++ + + W R F+
Sbjct: 165 ----------WEDELAYCQQLLEDDIYNNSAWNQRYFV 192
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 149 LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208
+ +EL + + S K+ AWSHR+WV+ + W E E +++ E N
Sbjct: 131 VTNELEFTKKIFSQDAKNYHAWSHRQWVLQALG------GW--EDELAYCQQLLEDDIYN 182
Query: 209 YRAWNHRCWLVSFMTREQVLNELKQSR 235
AWN R ++V TR +L L R
Sbjct: 183 NSAWNQRYFVV---TRSPLLGGLVAMR 206
>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2
Length = 375
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ K L L +E+ + ++ PK+ Q W HRR ++ + R+ S
Sbjct: 128 TVWHFRRVLL--KSLQKDLHEEMNYISAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 179
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY 250
+E E + I + NY AW HR W++ NEL+ V +NS ++
Sbjct: 180 --QELEFIADILTQDAKNYHAWQHRQWVIQEFKLWD--NELQYVDQLLKEDVRNNSVWN- 234
Query: 251 HRRLMIWNLEGF 262
R +I N G+
Sbjct: 235 QRYFVISNTTGY 246
>sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1
Length = 379
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ K L L +E+ ++ PK+ Q W HRR ++ + R+ S
Sbjct: 132 TVWHFRRVLL--KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPS----- 183
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY 250
+E E + I + NY AW HR W V+ E K N L D
Sbjct: 184 --QELEFIADILNQDAKNYHAWQHRQW---------VIQEFKLWDN--ELQYVDQLLKED 230
Query: 251 HRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------LH 304
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 231 VRNNSVWNQRYFVI---SNTTGY--NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285
Query: 305 RRFLSLY 311
R LS Y
Sbjct: 286 DRGLSKY 292
>sp|Q61239|FNTA_MOUSE Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1
Length = 377
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 38/190 (20%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ +W+
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVLV----------EWL 179
Query: 191 IE--RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSC 247
+ +E E + I + NY AW HR W++ ++ R W L D
Sbjct: 180 KDPSQELEFIADILSQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLL 227
Query: 248 FHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW----- 302
R +WN F +N++GY V + E+ + +IK E+ W
Sbjct: 228 KEDVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282
Query: 303 -LHRRFLSLY 311
L R LS Y
Sbjct: 283 ILQDRGLSRY 292
>sp|Q04631|FNTA_RAT Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1
Length = 377
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R++++ + L L +E+ ++ PK+ Q W HRR ++ + L++I
Sbjct: 132 TVWHFRRVLL--RSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFI 189
Query: 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-LHVADNSCFH 249
+ I + NY AW HR W++ ++ R W L D
Sbjct: 190 AD--------ILNQDAKNYHAWQHRQWVI------------QEFRLWDNELQYVDQLLKE 229
Query: 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW------L 303
R +WN F +N++GY V + E+ + +IK E+ W L
Sbjct: 230 DVRNNSVWNQRHFVI---SNTTGY--SDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284
Query: 304 HRRFLSLY 311
R LS Y
Sbjct: 285 QDRGLSRY 292
>sp|Q9JHK4|PGTA_MOUSE Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus
GN=Rabggta PE=1 SV=1
Length = 567
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++L ++ EL L +PKS W HR W+++ +
Sbjct: 61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWA--RELELCARFLEADERNFHCWDYR 149
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 150 MDE--LRLSAVVLSHSPKSEQAWSHRRWVINMI--SRNCSTLQWIIERESELVEKIAERS 205
+DE L L++ +L +P W+ RR V+ + ++ L +++ E +E +
Sbjct: 44 LDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVN 103
Query: 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
+Y W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 150
>sp|A5A779|PGTA_PIG Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++L ++ EL L +PKS W HR W++ +
Sbjct: 61 DFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS 220
W RE EL + E + N+ W++R ++ S
Sbjct: 121 PEP----NWA--RELELCARFLEVDERNFHCWDYRRFVAS 154
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 150 MDE--LRLSAVVLSHSPKSEQAWSHRRWVINM--ISRNCSTLQWIIERESELVEKIAERS 205
+DE L L++ +L +P W+ RR V+ + ++ L +++ E +E +
Sbjct: 44 LDESVLELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRVN 103
Query: 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
+Y W+HRCWL+ + EL+ + + + C+ Y R
Sbjct: 104 PKSYGTWHHRCWLLGRLPEPNWARELELCARFLEVDERNFHCWDYRR 150
>sp|Q55DQ4|PGTA_DICDI Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium
discoideum GN=rabggta PE=3 SV=2
Length = 311
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLS 161
D +++ V SK +L+ + +F T WN R+L + N +L I +E++ +
Sbjct: 47 DEISLSV---SKLVLIENPEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKFLEECIQ 103
Query: 162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS 220
KS W HR+W I + NC W ERE +L K+ N+ W HR +++
Sbjct: 104 RFTKSYWIWFHRQW-IALRMDNCD---W--EREMKLCTKLLNFDLRNFHCWGHRRFILK 156
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMIS--RNCSTLQWIIERESELVEKIAERSKMNYR 210
L +S +VL +P+ W++RR I + + S LQ I + E + +E+ +R +Y
Sbjct: 51 LSVSKLVLIENPEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKFLEECIQRFTKSYW 110
Query: 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256
W HR W+ M E+K + + C+ HRR ++
Sbjct: 111 IWFHRQWIALRMDNCDWEREMKLCTKLLNFDLRNFHCWG-HRRFIL 155
>sp|Q92696|PGTA_HUMAN Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens
GN=RABGGTA PE=1 SV=2
Length = 567
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++L ++ EL L +PKS W HR W++ +
Sbjct: 61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWT--RELELCARFLEVDERNFHCWDYR 149
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 150 MDE--LRLSAVVLSHSPKSEQAWSHRRWVINMI--SRNCSTLQWIIERESELVEKIAERS 205
+DE L L++ +L +P W+ RR V+ + ++ L +++ E +E +
Sbjct: 44 LDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVN 103
Query: 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHI 265
+Y W+HRCWL+ + EL+ + + + C+ Y R
Sbjct: 104 PKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRR------------- 150
Query: 266 QDNNSSGYFVETYQVWK--EELDWNESLIKRYVGREALWLHRRFL 308
FV T EEL + +SLI R + W +R L
Sbjct: 151 --------FVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCL 187
>sp|Q5NVK5|PGTA_PONAB Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++L ++ EL L +PKS W HR W++ +
Sbjct: 61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWT--RELELCARFLEVDERNFHCWDYR 149
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 150 MDE--LRLSAVVLSHSPKSEQAWSHRRWVINMI--SRNCSTLQWIIERESELVEKIAERS 205
+DE L L++ +L +P W+ RR V+ + ++ L +++ E +E +
Sbjct: 44 LDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVN 103
Query: 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHI 265
+Y W+HRCWL+ + EL+ + + + C+ Y R
Sbjct: 104 PKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRR------------- 150
Query: 266 QDNNSSGYFVETYQVWK--EELDWNESLIKRYVGREALWLHRRFL 308
FV T EEL + +SLI R + W +R L
Sbjct: 151 --------FVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCL 187
>sp|Q5EA80|PGTA_BOVIN Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++L ++ EL L +PKS W HR W+++ +
Sbjct: 61 DFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWA--RELELCARFLEVDERNFHCWDYR 149
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINM--ISRNCSTLQWIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + ++ L +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
W+HRCWL+S + EL+ + + + C+ Y R
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEVDERNFHCWDYRR 150
>sp|Q9Y765|FNTA_CANAX Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Candida albicans GN=RAM2 PE=1 SV=1
Length = 306
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 133 WNSRKLIV------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST 186
WN R+LI+ +N P E + +LS PK+ WS+R+W+++ +
Sbjct: 106 WNYRQLIIGQIMELNNNDFDP--YREFPILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163
Query: 187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
+E V+K+ + N AW+HR +L+
Sbjct: 164 ------KELSFVDKVIDTDLKNNSAWSHRFFLL 190
>sp|Q9LX33|FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2
Length = 326
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190
T W+ R+L++ + L L +EL + + K+ Q W HRRWV + + +
Sbjct: 75 TVWHFRRLVL--EALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPD------V 126
Query: 191 IERESELVEKIAERSKMNYRAWNHRCW 217
RE E ++ +Y AW+HR W
Sbjct: 127 AGRELEFTRRVLSLDAKHYHAWSHRQW 153
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 27/139 (19%)
Query: 170 WSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLN 229
W RR V+ ++ + + E E +E+IAE + NY+ W+HR W+ + +
Sbjct: 77 WHFRRLVLEALNHD-------LFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAGR 129
Query: 230 ELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNE 289
EL+ +R L HYH + H Q + + W++ELD+
Sbjct: 130 ELEFTRRVLSLDAK-----HYH---------AWSHRQ------WTLRALGGWEDELDYCH 169
Query: 290 SLIKRYVGREALWLHRRFL 308
L++ V + W R ++
Sbjct: 170 ELLEADVFNNSAWNQRYYV 188
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 133 WNSRKLIVSNKQLLP-ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191
W+ R+ + ++L P + EL + VLS K AWSHR+W + + W
Sbjct: 112 WHHRRWVA--EKLGPDVAGRELEFTRRVLSLDAKHYHAWSHRQWTLRALG------GW-- 161
Query: 192 ERESELVEKIAERSKMNYRAWNHRCWLVS 220
E E + ++ E N AWN R ++++
Sbjct: 162 EDELDYCHELLEADVFNNSAWNQRYYVIT 190
>sp|Q00618|PGTA_YEAST Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1
SV=3
Length = 327
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSN---KQLLPILMDELRLSAVVLSHSPKSEQ 168
+IE + + LL + +F WN R+ I+++ + +P EL ++L PK
Sbjct: 45 SIEALKKTSELLEKNPEFNAIWNYRRDIIASLASELEIPFWDKELVFVMMLLKDYPKVYW 104
Query: 169 AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W+HR WV+ + + + E +V K+ E+ NY W++R
Sbjct: 105 IWNHRLWVLKHYPTSSPK---VWQTELAVVNKLLEQDARNYHGWHYR 148
>sp|Q08602|PGTA_RAT Geranylgeranyl transferase type-2 subunit alpha OS=Rattus
norvegicus GN=Rabggta PE=1 SV=1
Length = 567
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 128 DFATAWNSRKLIV-------SNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI 180
DFAT WN R+ ++ S ++ ++ EL L +PKS W HR W+++ +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 181 SRNCSTLQWIIERESELVEKIAERSKMNYRAWNHR 215
W RE EL + E + N+ W++R
Sbjct: 121 PEP----NWA--RELELCARFLEADERNFHCWDYR 149
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ--WIIERESELVEKIAERSKMNYR 210
L L++ +L +P W+ RR V+ + S + +++ E +E + +Y
Sbjct: 49 LELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108
Query: 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252
W+HRCWL+S + EL+ + + C+ Y R
Sbjct: 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 150
>sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1
Length = 333
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 31/158 (19%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L L+A + + + W RR ++ +L+ + E E VE++A + NY+ W
Sbjct: 66 LALTAEAIGLNAGNYTVWHFRRLLLE-------SLKVDLHVEREFVERVASGNSKNYQIW 118
Query: 213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY--HRRLMIWNLEGFCHIQDNNS 270
+HR W+ + E +EL+ ++ + D +H HR+ ++ NL G
Sbjct: 119 HHRRWVAEKLGPEARNSELEFTKK---ILSVDAKHYHAWSHRQWVLQNLGG--------- 166
Query: 271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308
W++EL + L+ + + W R F+
Sbjct: 167 ----------WEDELSYCSELLAEDIFNNSAWNQRYFV 194
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 152 ELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA 211
EL + +LS K AWSHR+WV+ + W E E ++ N A
Sbjct: 136 ELEFTKKILSVDAKHYHAWSHRQWVLQNLG------GW--EDELSYCSELLAEDIFNNSA 187
Query: 212 WNHRCWLVSFMTREQVLNELKQSR 235
WN R +++ TR VL LK R
Sbjct: 188 WNQRYFVI---TRSPVLGGLKAMR 208
>sp|O94412|PGTA_SCHPO Geranylgeranyl transferase type-2 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=bet4 PE=3 SV=1
Length = 344
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 131 TAWNSRKLIVSNKQLLP---------ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMIS 181
+ WN R+ I+ N + P +L +EL+ + PK ++HRRW +
Sbjct: 64 SVWNYRREILLN-DVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCL---- 118
Query: 182 RNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241
N W E + EK+ N+ W++R ++VS + R + K+ ++
Sbjct: 119 ENAPYPNW--NYEMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSA 176
Query: 242 VADN----SCFHYHRRLM--IWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRY 295
+A N S H +L+ I NLE D NS + Q+ ++ELD +
Sbjct: 177 IATNFSNFSALHNRTKLIETILNLEA-----DPNSQKALAK--QILEQELDMIHQAVFTD 229
Query: 296 VGREALWLHRRFL 308
++W++ R+L
Sbjct: 230 PDDSSVWIYHRWL 242
>sp|A0RQT4|PGK_CAMFF Phosphoglycerate kinase OS=Campylobacter fetus subsp. fetus (strain
82-40) GN=pgk PE=3 SV=1
Length = 401
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 18 AQLERILDLDPLIDEV---GFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGIS 74
+L+ + +L P +D++ G + + L + E IGNSL ED E+T+ + +LG+
Sbjct: 206 GKLQALTNLLPRVDKLIIGGGMAFTFLKAIGENIGNSLLEEDLIEEATNILKKGRELGV- 264
Query: 75 TQILIPVYKAAKHAF 89
+I +PV A F
Sbjct: 265 -KIYLPVDVVAAQTF 278
>sp|O60052|FNTA_SCHPO Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwp1 PE=1 SV=1
Length = 294
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219
K+ Q W HR+ ++++ ERE E +K+ E NY W++R W++
Sbjct: 109 KNYQVWHHRQKILSLTKN--------YERELEFTKKMFEIDSKNYHVWSYRVWIL 155
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 45/164 (27%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212
L L+ ++ ++P W++R ++N I+ E E +++IAE + NY+ W
Sbjct: 62 LNLTGFLIMNNPAHYTVWAYRFQILNHTPS-------YIDNELEWLDEIAEDFQKNYQVW 114
Query: 213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG 272
+HR ++S +Y R L E + + +S
Sbjct: 115 HHRQKILSLTK-------------------------NYEREL-----EFTKKMFEIDSKN 144
Query: 273 YFVETYQVW--------KEELDWNESLIKRYVGREALWLHRRFL 308
Y V +Y+VW +EL L+++ + + W HR ++
Sbjct: 145 YHVWSYRVWILQNFNDYSQELKLTNELLEKDIYNNSAWNHRFYV 188
>sp|P29703|FNTA_YEAST Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAM2 PE=1 SV=1
Length = 316
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 153 LRLSAVVLSHSPKSEQAWSHRRWVI-NMISRNCSTLQWIIERESELVEKIAERSKMNYRA 211
L+L+A ++ +P W++R ++ +M+S + T+ ++ +E + ++++ + NY+
Sbjct: 52 LQLTAEIIDVAPAFYTIWNYRFNIVRHMMSESEDTVLYL-NKELDWLDEVTLNNPKNYQI 110
Query: 212 WNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271
W++R L+ EL + L + D+S +YH +W+ +C +
Sbjct: 111 WSYRQSLLKLHPSPSFKRELPILK----LMIDDDSK-NYH----VWSYRKWCCL------ 155
Query: 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307
F +Q EL + LI+ + + W HR F
Sbjct: 156 --FFSDFQ---HELAYASDLIETDIYNNSAWTHRMF 186
>sp|Q58707|Y1311_METJA Uncharacterized protein MJ1311 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1311 PE=4 SV=1
Length = 293
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 60 ESTSFWIRDHKLGISTQILIP------VYKAAKHAF-----ISALRQYKTPGNFSGKSQ- 107
+ S W+ D K G+S+ + +P + K A+H F + Y +P N +
Sbjct: 8 DKKSKWVLDMKFGVSSLVFLPESLTSSMEKIAEHNFDAWEIVCEGTHYLSPKNIKYLMEL 67
Query: 108 DDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRL-SAVVLSHSPKS 166
D +E+++H+ S + N R ++ + + + L S VV+ H
Sbjct: 68 RDRYEVEIVVHAP----FSDLNPASMNERVRKLTVECIRDAIEGAFELDSEVVVVHPGYI 123
Query: 167 EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA 211
+ WS+ +V ++ N STL I+E + KI + N+R
Sbjct: 124 PELWSN--YVSEILDNNFSTLSEIVEIAEDYGIKIGLENMPNFRG 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,380,996
Number of Sequences: 539616
Number of extensions: 6282834
Number of successful extensions: 13468
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13317
Number of HSP's gapped (non-prelim): 83
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)