Query 045108
Match_columns 425
No_of_seqs 339 out of 1085
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045108.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045108hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02789 farnesyltranstransfer 100.0 5.8E-47 1.2E-51 377.1 26.6 300 24-423 6-318 (320)
2 KOG0530 Protein farnesyltransf 100.0 1.3E-47 2.8E-52 359.4 20.1 281 75-425 35-316 (318)
3 KOG0529 Protein geranylgeranyl 100.0 2E-38 4.3E-43 314.3 18.3 246 75-350 21-277 (421)
4 COG5536 BET4 Protein prenyltra 100.0 4.2E-38 9.1E-43 297.1 19.3 267 109-422 45-326 (328)
5 KOG0529 Protein geranylgeranyl 100.0 5E-36 1.1E-40 297.2 15.8 193 150-381 46-242 (421)
6 COG5536 BET4 Protein prenyltra 100.0 9.6E-34 2.1E-38 267.6 13.4 193 148-380 47-239 (328)
7 PLN02789 farnesyltranstransfer 100.0 6.9E-31 1.5E-35 261.7 19.6 202 121-380 28-229 (320)
8 KOG0530 Protein farnesyltransf 100.0 3.4E-30 7.5E-35 242.1 15.9 193 128-380 41-233 (318)
9 PF01239 PPTA: Protein prenylt 98.9 1.3E-09 2.8E-14 71.2 4.3 30 193-222 1-30 (31)
10 PF01239 PPTA: Protein prenylt 98.8 8.5E-09 1.8E-13 67.3 4.2 30 151-180 1-30 (31)
11 TIGR00990 3a0801s09 mitochondr 98.8 1.5E-06 3.2E-11 94.4 23.7 160 112-304 347-506 (615)
12 TIGR00990 3a0801s09 mitochondr 98.7 4.8E-06 1E-10 90.5 23.8 167 111-310 309-478 (615)
13 PRK15359 type III secretion sy 98.6 1.6E-06 3.6E-11 76.7 15.6 126 117-258 14-139 (144)
14 PRK15359 type III secretion sy 98.3 2.6E-05 5.5E-10 69.1 14.5 124 154-310 14-137 (144)
15 PRK12370 invasion protein regu 98.3 7.6E-05 1.7E-09 80.3 20.8 166 111-306 276-448 (553)
16 TIGR02552 LcrH_SycD type III s 98.2 8.8E-05 1.9E-09 63.7 15.8 126 118-256 5-130 (135)
17 PRK12370 invasion protein regu 98.2 0.00012 2.6E-09 78.8 19.9 161 112-305 320-481 (553)
18 PRK11189 lipoprotein NlpI; Pro 98.2 7.2E-05 1.6E-09 74.1 16.8 121 112-248 80-202 (296)
19 PRK11189 lipoprotein NlpI; Pro 98.1 0.00024 5.3E-09 70.3 18.6 121 112-245 42-166 (296)
20 TIGR02917 PEP_TPR_lipo putativ 97.9 0.0036 7.7E-08 68.9 24.7 160 112-304 141-300 (899)
21 TIGR02917 PEP_TPR_lipo putativ 97.9 0.005 1.1E-07 67.7 25.7 127 112-251 447-573 (899)
22 TIGR02521 type_IV_pilW type IV 97.9 0.0041 8.9E-08 56.5 21.2 160 112-304 47-208 (234)
23 PRK10370 formate-dependent nit 97.8 0.00076 1.6E-08 63.0 15.0 126 110-246 53-179 (198)
24 PRK15174 Vi polysaccharide exp 97.8 0.0013 2.9E-08 72.3 18.7 132 112-256 228-363 (656)
25 PRK09782 bacteriophage N4 rece 97.8 0.0015 3.2E-08 74.8 19.4 156 111-300 557-712 (987)
26 KOG1126 DNA-binding cell divis 97.6 0.0011 2.5E-08 70.6 14.5 137 109-258 468-604 (638)
27 PRK15174 Vi polysaccharide exp 97.6 0.0074 1.6E-07 66.4 21.0 132 147-305 226-357 (656)
28 TIGR02552 LcrH_SycD type III s 97.6 0.0043 9.2E-08 53.1 15.3 126 155-310 5-130 (135)
29 KOG1126 DNA-binding cell divis 97.5 0.0012 2.7E-08 70.3 13.5 126 150-305 472-597 (638)
30 PRK09782 bacteriophage N4 rece 97.5 0.0017 3.7E-08 74.2 15.4 124 110-247 590-713 (987)
31 PLN03088 SGT1, suppressor of 97.5 0.0023 5E-08 65.2 14.7 101 111-222 17-117 (356)
32 KOG0547 Translocase of outer m 97.5 0.014 3.1E-07 60.6 19.6 188 115-360 345-538 (606)
33 PRK10370 formate-dependent nit 97.4 0.0049 1.1E-07 57.5 14.6 126 147-300 53-179 (198)
34 PRK11447 cellulose synthase su 97.4 0.016 3.5E-07 67.9 21.6 139 111-255 284-429 (1157)
35 PRK15179 Vi polysaccharide bio 97.3 0.012 2.6E-07 65.0 18.8 117 111-240 101-217 (694)
36 KOG0548 Molecular co-chaperone 97.2 0.0065 1.4E-07 63.6 14.1 150 81-247 313-462 (539)
37 PRK11788 tetratricopeptide rep 97.2 0.047 1E-06 55.2 20.4 159 112-301 123-285 (389)
38 PLN03088 SGT1, suppressor of 97.2 0.0051 1.1E-07 62.6 13.2 103 147-259 16-118 (356)
39 KOG4626 O-linked N-acetylgluco 97.0 0.028 6.2E-07 60.0 16.7 167 111-310 335-501 (966)
40 TIGR02521 type_IV_pilW type IV 97.0 0.12 2.6E-06 46.8 19.3 132 111-255 80-213 (234)
41 KOG0553 TPR repeat-containing 97.0 0.0074 1.6E-07 59.3 11.0 104 147-260 95-198 (304)
42 KOG4626 O-linked N-acetylgluco 96.9 0.024 5.3E-07 60.5 15.0 185 111-309 131-330 (966)
43 KOG0547 Translocase of outer m 96.9 0.032 6.8E-07 58.2 15.2 162 111-304 375-542 (606)
44 PRK11788 tetratricopeptide rep 96.9 0.15 3.2E-06 51.5 20.2 121 112-245 51-175 (389)
45 PF13429 TPR_15: Tetratricopep 96.8 0.029 6.4E-07 54.5 14.3 133 112-257 126-260 (280)
46 PRK15179 Vi polysaccharide bio 96.8 0.15 3.1E-06 56.6 20.9 133 113-258 69-201 (694)
47 PF13414 TPR_11: TPR repeat; P 96.8 0.011 2.3E-07 44.7 8.5 68 129-206 2-69 (69)
48 TIGR03302 OM_YfiO outer membra 96.8 0.48 1E-05 44.5 21.8 143 112-257 49-215 (235)
49 KOG0624 dsRNA-activated protei 96.7 0.19 4E-06 50.6 18.8 134 113-257 55-201 (504)
50 PF13429 TPR_15: Tetratricopep 96.7 0.044 9.6E-07 53.3 14.5 134 147-310 124-259 (280)
51 KOG2076 RNA polymerase III tra 96.7 0.072 1.6E-06 59.0 17.1 118 112-242 155-272 (895)
52 PRK11447 cellulose synthase su 96.6 0.14 3E-06 60.1 20.2 135 147-309 283-429 (1157)
53 PRK10049 pgaA outer membrane p 96.6 0.076 1.6E-06 59.6 17.2 131 112-256 31-161 (765)
54 PRK10049 pgaA outer membrane p 96.6 0.16 3.4E-06 57.1 19.5 164 112-308 288-470 (765)
55 KOG0553 TPR repeat-containing 96.5 0.018 3.8E-07 56.7 10.1 104 110-224 95-198 (304)
56 PF13414 TPR_11: TPR repeat; P 96.4 0.033 7.1E-07 42.0 8.8 68 166-242 2-69 (69)
57 cd00189 TPR Tetratricopeptide 96.3 0.13 2.8E-06 38.6 12.2 97 133-242 3-99 (100)
58 TIGR03302 OM_YfiO outer membra 96.2 0.9 1.9E-05 42.6 19.4 167 129-309 32-213 (235)
59 PRK14574 hmsH outer membrane p 96.1 0.35 7.7E-06 54.6 18.8 118 113-246 51-171 (822)
60 cd00189 TPR Tetratricopeptide 95.5 0.22 4.8E-06 37.2 10.2 85 112-207 16-100 (100)
61 PRK02603 photosystem I assembl 95.3 0.31 6.6E-06 44.0 12.1 115 120-245 23-154 (172)
62 cd05804 StaR_like StaR_like; a 95.2 1.6 3.4E-05 43.5 18.0 101 148-255 58-158 (355)
63 PRK14574 hmsH outer membrane p 95.2 4.2 9E-05 46.2 22.8 131 112-258 84-216 (822)
64 PF13432 TPR_16: Tetratricopep 95.1 0.11 2.3E-06 38.7 7.1 54 147-208 11-64 (65)
65 KOG0624 dsRNA-activated protei 95.0 3 6.5E-05 42.3 18.4 164 113-307 89-265 (504)
66 COG3063 PilF Tfp pilus assembl 94.9 0.57 1.2E-05 44.8 12.7 123 112-247 51-175 (250)
67 TIGR02795 tol_pal_ybgF tol-pal 94.9 0.44 9.6E-06 38.9 11.0 88 112-210 18-111 (119)
68 PF13371 TPR_9: Tetratricopept 94.8 0.12 2.7E-06 39.1 6.9 57 110-169 9-65 (73)
69 cd05804 StaR_like StaR_like; a 94.8 2.6 5.6E-05 41.9 18.2 123 111-244 58-181 (355)
70 KOG0548 Molecular co-chaperone 94.8 0.31 6.7E-06 51.4 11.6 93 111-214 373-465 (539)
71 KOG3060 Uncharacterized conser 94.7 1 2.2E-05 43.7 13.9 136 109-256 99-236 (289)
72 KOG1155 Anaphase-promoting com 94.6 5.9 0.00013 41.6 20.0 136 147-312 344-479 (559)
73 PF13432 TPR_16: Tetratricopep 94.6 0.12 2.5E-06 38.5 6.1 53 112-167 13-65 (65)
74 KOG1156 N-terminal acetyltrans 94.6 0.52 1.1E-05 50.8 12.8 100 113-223 24-123 (700)
75 PRK11906 transcriptional regul 94.6 0.83 1.8E-05 47.8 14.0 129 109-247 271-408 (458)
76 KOG2076 RNA polymerase III tra 94.5 0.89 1.9E-05 50.7 14.8 101 147-257 153-253 (895)
77 KOG4162 Predicted calmodulin-b 94.5 0.65 1.4E-05 51.0 13.5 122 112-244 666-787 (799)
78 PRK15363 pathogenicity island 94.4 0.94 2E-05 40.8 12.4 99 63-182 15-118 (157)
79 TIGR02795 tol_pal_ybgF tol-pal 94.2 1.6 3.4E-05 35.6 12.7 90 147-246 16-111 (119)
80 PRK02603 photosystem I assembl 94.1 1.2 2.6E-05 40.1 12.7 128 157-298 23-153 (172)
81 COG4783 Putative Zn-dependent 94.1 2.5 5.3E-05 44.4 16.2 119 127-258 303-421 (484)
82 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.27 5.9E-06 51.3 8.8 74 125-209 70-146 (453)
83 KOG1125 TPR repeat-containing 93.7 6.3 0.00014 42.3 18.5 99 190-310 445-553 (579)
84 KOG1155 Anaphase-promoting com 93.7 4.9 0.00011 42.2 17.3 134 112-258 346-479 (559)
85 KOG1125 TPR repeat-containing 93.6 0.53 1.2E-05 50.1 10.5 87 112-209 446-532 (579)
86 PRK11906 transcriptional regul 93.6 3.4 7.4E-05 43.4 16.2 154 124-299 242-406 (458)
87 KOG1156 N-terminal acetyltrans 93.5 0.74 1.6E-05 49.7 11.3 102 147-258 21-122 (700)
88 PF13371 TPR_9: Tetratricopept 93.4 0.45 9.7E-06 36.0 7.4 57 190-248 10-66 (73)
89 PRK10153 DNA-binding transcrip 93.4 4.3 9.3E-05 43.6 17.4 154 124-300 331-488 (517)
90 KOG4234 TPR repeat-containing 92.6 1.2 2.6E-05 42.0 10.1 91 147-247 109-204 (271)
91 CHL00033 ycf3 photosystem I as 92.6 3 6.5E-05 37.2 12.7 105 130-245 35-154 (168)
92 CHL00033 ycf3 photosystem I as 92.3 1.8 3.9E-05 38.6 11.0 97 111-210 50-155 (168)
93 TIGR00540 hemY_coli hemY prote 92.3 7.7 0.00017 40.0 16.9 169 111-304 168-376 (409)
94 KOG3060 Uncharacterized conser 92.2 12 0.00026 36.5 19.4 139 109-257 25-166 (289)
95 PRK14720 transcript cleavage f 92.2 2.2 4.9E-05 48.5 13.6 131 122-258 23-163 (906)
96 PRK10803 tol-pal system protei 91.9 4.1 9E-05 39.8 13.6 89 112-211 159-253 (263)
97 PRK10153 DNA-binding transcrip 91.9 5.8 0.00013 42.6 15.9 125 111-246 357-488 (517)
98 KOG0495 HAT repeat protein [RN 91.9 13 0.00028 40.8 17.9 172 111-312 666-898 (913)
99 PF14559 TPR_19: Tetratricopep 91.8 0.7 1.5E-05 34.4 6.5 58 112-172 7-64 (68)
100 KOG4162 Predicted calmodulin-b 91.8 1.1 2.5E-05 49.2 10.2 88 112-208 700-787 (799)
101 PLN03098 LPA1 LOW PSII ACCUMUL 91.4 0.79 1.7E-05 47.9 8.2 70 162-241 70-142 (453)
102 PRK15363 pathogenicity island 90.5 7.6 0.00016 35.0 12.7 102 127-239 32-134 (157)
103 KOG2002 TPR-containing nuclear 90.1 40 0.00086 38.6 21.6 200 112-313 546-764 (1018)
104 PF14559 TPR_19: Tetratricopep 89.3 1.5 3.2E-05 32.5 6.3 58 147-212 5-62 (68)
105 KOG1127 TPR repeat-containing 89.3 12 0.00026 42.9 15.4 138 112-256 18-165 (1238)
106 COG3063 PilF Tfp pilus assembl 89.3 10 0.00023 36.4 13.1 126 147-302 49-176 (250)
107 COG4783 Putative Zn-dependent 89.1 12 0.00025 39.6 14.4 102 112-224 322-423 (484)
108 TIGR00540 hemY_coli hemY prote 88.8 17 0.00036 37.5 15.8 129 118-258 247-383 (409)
109 PF06552 TOM20_plant: Plant sp 88.1 11 0.00023 34.9 12.0 106 191-305 7-120 (186)
110 PRK14720 transcript cleavage f 87.4 22 0.00048 40.7 16.5 173 110-301 45-259 (906)
111 PF06552 TOM20_plant: Plant sp 87.3 6.1 0.00013 36.5 9.9 96 114-209 9-114 (186)
112 PF13431 TPR_17: Tetratricopep 86.6 0.68 1.5E-05 30.4 2.5 28 197-224 1-28 (34)
113 KOG1128 Uncharacterized conser 85.2 28 0.0006 38.6 15.0 63 191-255 501-563 (777)
114 PRK10803 tol-pal system protei 84.6 12 0.00026 36.6 11.2 91 147-247 157-253 (263)
115 PF12895 Apc3: Anaphase-promot 84.2 6.2 0.00013 30.8 7.6 67 148-223 4-72 (84)
116 KOG2002 TPR-containing nuclear 83.9 31 0.00068 39.4 15.1 137 110-259 626-764 (1018)
117 PF13431 TPR_17: Tetratricopep 83.7 1.4 3E-05 28.9 3.0 26 119-144 2-27 (34)
118 PF12895 Apc3: Anaphase-promot 83.7 5.3 0.00011 31.2 6.9 77 112-200 5-83 (84)
119 KOG1127 TPR repeat-containing 83.6 26 0.00056 40.3 14.2 133 112-257 474-608 (1238)
120 KOG4234 TPR repeat-containing 83.6 11 0.00025 35.6 9.9 91 110-211 109-204 (271)
121 KOG2396 HAT (Half-A-TPR) repea 82.1 14 0.0003 39.3 10.9 94 76-177 88-186 (568)
122 PF00515 TPR_1: Tetratricopept 81.8 3 6.6E-05 26.5 4.1 33 168-208 2-34 (34)
123 KOG0550 Molecular chaperone (D 81.1 21 0.00046 37.1 11.6 161 111-297 184-353 (486)
124 PRK15331 chaperone protein Sic 80.1 35 0.00076 31.1 11.6 105 70-203 29-133 (165)
125 PF09295 ChAPs: ChAPs (Chs5p-A 79.9 37 0.0008 35.3 13.3 60 193-255 218-278 (395)
126 KOG0495 HAT repeat protein [RN 79.1 1.1E+02 0.0024 34.0 18.5 109 112-224 566-700 (913)
127 PF07719 TPR_2: Tetratricopept 79.0 5 0.00011 25.2 4.4 33 168-208 2-34 (34)
128 PF13428 TPR_14: Tetratricopep 78.6 6.1 0.00013 27.0 5.0 38 132-172 3-40 (44)
129 PF00515 TPR_1: Tetratricopept 76.6 6.6 0.00014 24.9 4.4 33 131-166 2-34 (34)
130 KOG0543 FKBP-type peptidyl-pro 76.5 26 0.00055 36.3 10.6 85 112-206 273-357 (397)
131 KOG0550 Molecular chaperone (D 76.2 16 0.00034 38.1 9.0 122 112-243 219-353 (486)
132 KOG1173 Anaphase-promoting com 74.3 1.4E+02 0.0029 32.5 18.8 213 111-360 259-524 (611)
133 KOG1173 Anaphase-promoting com 71.1 1.6E+02 0.0034 32.0 15.1 176 113-315 329-535 (611)
134 PF08424 NRDE-2: NRDE-2, neces 70.6 1.1E+02 0.0025 30.5 13.8 98 118-223 7-114 (321)
135 PRK10747 putative protoheme IX 70.1 1.4E+02 0.0029 30.7 19.1 64 112-178 134-198 (398)
136 PF07719 TPR_2: Tetratricopept 69.8 14 0.00031 23.0 4.8 33 131-166 2-34 (34)
137 KOG1174 Anaphase-promoting com 69.4 1.5E+02 0.0034 31.1 15.0 121 112-247 248-370 (564)
138 COG4785 NlpI Lipoprotein NlpI, 68.1 14 0.00031 35.4 6.1 86 155-250 87-174 (297)
139 KOG1128 Uncharacterized conser 67.5 1.1E+02 0.0024 34.1 13.4 117 111-240 500-616 (777)
140 PF09295 ChAPs: ChAPs (Chs5p-A 66.5 39 0.00085 35.1 9.6 78 111-199 215-292 (395)
141 PF13428 TPR_14: Tetratricopep 65.7 14 0.00031 25.1 4.4 38 169-214 3-40 (44)
142 COG5010 TadD Flp pilus assembl 64.2 1.5E+02 0.0032 29.0 13.3 128 114-255 51-178 (257)
143 COG4235 Cytochrome c biogenesi 63.0 1.7E+02 0.0036 29.2 14.3 125 111-245 137-261 (287)
144 PRK10941 hypothetical protein; 60.9 74 0.0016 31.2 10.0 56 111-169 196-251 (269)
145 KOG1174 Anaphase-promoting com 60.1 63 0.0014 33.9 9.4 90 110-211 418-507 (564)
146 PF12569 NARP1: NMDA receptor- 53.0 3.3E+02 0.0071 29.4 16.5 135 113-258 211-358 (517)
147 KOG0543 FKBP-type peptidyl-pro 52.1 3E+02 0.0064 28.7 15.3 55 147-209 271-325 (397)
148 PF13181 TPR_8: Tetratricopept 48.8 34 0.00074 21.3 3.8 33 168-208 2-34 (34)
149 PF13424 TPR_12: Tetratricopep 46.6 38 0.00083 25.5 4.4 68 127-205 2-76 (78)
150 PF08424 NRDE-2: NRDE-2, neces 46.3 2.2E+02 0.0048 28.4 10.9 98 152-251 4-105 (321)
151 PF13226 DUF4034: Domain of un 46.2 1.2E+02 0.0026 29.9 8.8 81 151-231 61-155 (277)
152 KOG0376 Serine-threonine phosp 44.8 55 0.0012 34.6 6.4 90 147-246 18-107 (476)
153 KOG4555 TPR repeat-containing 43.2 89 0.0019 27.8 6.4 69 147-223 57-129 (175)
154 KOG4555 TPR repeat-containing 42.3 1.5E+02 0.0032 26.5 7.6 69 111-182 58-130 (175)
155 COG5191 Uncharacterized conser 38.7 1.5E+02 0.0033 30.0 8.1 94 124-239 101-195 (435)
156 KOG2396 HAT (Half-A-TPR) repea 38.7 2.8E+02 0.006 29.9 10.3 93 110-213 85-178 (568)
157 KOG0376 Serine-threonine phosp 35.5 69 0.0015 33.9 5.4 68 189-258 18-85 (476)
158 PF04184 ST7: ST7 protein; In 35.1 6.1E+02 0.013 27.4 14.7 62 227-310 275-340 (539)
159 PRK10941 hypothetical protein; 35.1 1.2E+02 0.0026 29.8 6.8 58 189-248 195-252 (269)
160 PF13174 TPR_6: Tetratricopept 31.8 1E+02 0.0022 18.7 3.9 20 147-166 14-33 (33)
161 COG5191 Uncharacterized conser 30.0 2.1E+02 0.0046 29.0 7.5 55 114-171 125-180 (435)
162 COG4235 Cytochrome c biogenesi 29.2 5.8E+02 0.013 25.4 14.7 133 149-313 138-271 (287)
163 KOG1310 WD40 repeat protein [G 28.4 3.3E+02 0.0072 29.7 8.9 113 165-299 366-479 (758)
164 COG2956 Predicted N-acetylgluc 28.3 5.9E+02 0.013 26.1 10.3 86 113-206 158-245 (389)
165 KOG2376 Signal recognition par 24.6 8.3E+02 0.018 26.9 11.2 113 113-245 29-144 (652)
166 cd07984 LPLAT_LABLAT-like Lyso 23.7 59 0.0013 29.2 2.3 23 194-217 169-191 (192)
167 PF14853 Fis1_TPR_C: Fis1 C-te 23.3 2.3E+02 0.005 20.5 4.9 28 147-174 15-42 (53)
168 PF13525 YfiO: Outer membrane 23.3 5.8E+02 0.012 23.3 14.3 103 112-217 21-132 (203)
169 smart00386 HAT HAT (Half-A-TPR 22.4 1.3E+02 0.0027 17.9 3.1 25 149-173 3-27 (33)
170 PF12569 NARP1: NMDA receptor- 22.1 1E+03 0.022 25.7 20.4 95 134-242 198-293 (517)
171 KOG1308 Hsp70-interacting prot 21.6 1.5E+02 0.0032 30.4 4.7 92 75-180 104-195 (377)
172 PF04733 Coatomer_E: Coatomer 21.2 2.6E+02 0.0057 27.6 6.5 70 147-224 181-250 (290)
173 PF14853 Fis1_TPR_C: Fis1 C-te 20.7 2.1E+02 0.0045 20.8 4.2 29 112-140 17-45 (53)
174 PRK13683 hypothetical protein; 20.3 85 0.0018 25.4 2.2 26 8-33 20-46 (87)
175 KOG3824 Huntingtin interacting 20.2 3.5E+02 0.0076 27.5 6.9 61 112-175 132-192 (472)
No 1
>PLN02789 farnesyltranstransferase
Probab=100.00 E-value=5.8e-47 Score=377.07 Aligned_cols=300 Identities=20% Similarity=0.244 Sum_probs=237.2
Q ss_pred hccCCCCCcccccCCcchhhchhhhccCCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045108 24 LDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNFS 103 (425)
Q Consensus 24 l~~dp~idei~~i~~~~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~lgi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~ 103 (425)
+..+|.|++|.+||.. + | .=+|....+.+.|..|...|+++++
T Consensus 6 ~~~~~~~~d~~p~~~~-------~-~--------------------~~~~~~i~y~~~~~~a~~~~ra~l~--------- 48 (320)
T PLN02789 6 LSQRPEWADVTPIPQD-------D-G--------------------PNPVVPIAYTPEFREAMDYFRAVYA--------- 48 (320)
T ss_pred cccCCCcCCccccCCC-------C-C--------------------CCcccceeeCHHHHHHHHHHHHHHH---------
Confidence 5678999999998832 1 1 0155566678999999999999887
Q ss_pred CCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108 104 GKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN 183 (425)
Q Consensus 104 ~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~ 183 (425)
..+.++++|.+|.++|.+||+|||||++|+.+|..++ ..+++||.+++.++..|||+|++|+||+|++.+++..
T Consensus 49 ----~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~--~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 ----SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALD--ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred ----cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 3567899999999999999999999999999999884 4689999999999999999999999999999987641
Q ss_pred cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcccc
Q 045108 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFC 263 (425)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~ 263 (425)
...+|+.+++++++.+|||||||+||+|++.+++. +++||++++++|+.||+|+|||+||.+++.++...
T Consensus 123 ------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l-- 192 (320)
T PLN02789 123 ------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL-- 192 (320)
T ss_pred ------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc--
Confidence 24789999999999999999999999999999976 89999999999999999999999999999875210
Q ss_pred ccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHH
Q 045108 264 HIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDH 343 (425)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~ 343 (425)
+ . ...+.++|++|+.++|..+|+|+|+|+|+++++..... +. .......+|.
T Consensus 193 --------~-~--~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~-------~l--------~~~~~~~~~~-- 244 (320)
T PLN02789 193 --------G-G--LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE-------AL--------VSDPEVSSVC-- 244 (320)
T ss_pred --------c-c--ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc-------cc--------ccchhHHHHH--
Confidence 0 0 01256789999999999999999999999999864100 00 0001122332
Q ss_pred HHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhh-------------hhhcchhhHHHHHhhhCCC
Q 045108 344 ELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQE-------------KLQAGAGDLMRMLKRSCPD 410 (425)
Q Consensus 344 E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~p~ 410 (425)
.+++...|+ +..++.||+|.+++... +..+ .. ..+..+.++|.++|||
T Consensus 245 -----~~~~~~~~~------------s~~al~~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 245 -----LEVLSKDSN------------HVFALSDLLDLLCEGLQ-PTAEFRDTVDTLAEELSDS-TLAQAVCSELEVADPM 305 (320)
T ss_pred -----HHhhcccCC------------cHHHHHHHHHHHHhhhc-cchhhhhhhhccccccccH-HHHHHHHHHHHhhCcH
Confidence 222223442 35689999999986521 1000 11 2478899999999999
Q ss_pred ccchhhhhhccCC
Q 045108 411 RSSLWDYLVGYHS 423 (425)
Q Consensus 411 r~~~w~~~~~~~~ 423 (425)
|++||+||++.+.
T Consensus 306 r~~yw~~~~~~~~ 318 (320)
T PLN02789 306 RRNYWAWRKSKLP 318 (320)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998874
No 2
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-47 Score=359.38 Aligned_cols=281 Identities=19% Similarity=0.242 Sum_probs=216.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHH
Q 045108 75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELR 154 (425)
Q Consensus 75 ~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~ 154 (425)
+.++..-|+.+..+|++.+. .++.|+++|++|..+|.+||.|||+|+||+.+|.++. .++.+||+
T Consensus 35 ~I~Yte~fr~~m~YfRAI~~-------------~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~--~dL~~El~ 99 (318)
T KOG0530|consen 35 KIAYTEDFRDVMDYFRAIIA-------------KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM--SDLNKELE 99 (318)
T ss_pred EeeechhHHHHHHHHHHHHh-------------ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH--HHHHHHHH
Confidence 44567789999999888776 4689999999999999999999999999999999996 78999999
Q ss_pred HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108 155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS 234 (425)
Q Consensus 155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (425)
+++.+..-|||||++|+|||++++.++.. --+||+||..++..+.||||||+||.|+++.++. ++.||+++
T Consensus 100 ~l~eI~e~npKNYQvWHHRr~ive~l~d~-------s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~--~~~EL~y~ 170 (318)
T KOG0530|consen 100 YLDEIIEDNPKNYQVWHHRRVIVELLGDP-------SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD--YEDELAYA 170 (318)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHhcCc-------ccchHHHHHHHHhccccchhhhHHHHHHHHHHhh--HHHHHHHH
Confidence 99999999999999999999999998752 1399999999999999999999999999999987 99999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 045108 235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIK 314 (425)
Q Consensus 235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~ 314 (425)
..+|+.|.+|+|||+||.|++....+ ......+++|+.|+.++|...|.|+|+|+|+++++..
T Consensus 171 ~~Lle~Di~NNSAWN~Ryfvi~~~~~--------------~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~--- 233 (318)
T KOG0530|consen 171 DELLEEDIRNNSAWNQRYFVITNTKG--------------VISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL--- 233 (318)
T ss_pred HHHHHHhhhccchhheeeEEEEeccC--------------CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh---
Confidence 99999999999999999999875322 1123578999999999999999999999999999863
Q ss_pred HHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhhhh
Q 045108 315 HIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQ 394 (425)
Q Consensus 315 ~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~~~ 394 (425)
+.+.+ .......|+.. .. +-++..++.. -+.+.-+|.+=.+.+.+.. ++ ..
T Consensus 234 -----d~gl~--------s~s~vv~f~~~-------l~-~~~~~~sP~l--la~l~d~~~e~~l~~~~~~-----~~-~a 284 (318)
T KOG0530|consen 234 -----DSGLS--------SDSKVVSFVEN-------LY-LQLPKRSPFL--LAFLLDLYAEDALAYKSSA-----EE-LA 284 (318)
T ss_pred -----ccCCc--------CCchHHHHHHH-------Hh-hccCCCChhH--HHHHHHHHHHHHhhccccc-----hH-HH
Confidence 01111 12234344322 22 2233322221 2222233321111111111 11 11
Q ss_pred cchhhHHHHHh-hhCCCccchhhhhhccCCCC
Q 045108 395 AGAGDLMRMLK-RSCPDRSSLWDYLVGYHSEP 425 (425)
Q Consensus 395 ~~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~~ 425 (425)
..+.++-+.|+ ++||+|.+||.|++++++.+
T Consensus 285 ~~a~~ly~~La~~~DpiR~nyW~~~~s~ls~~ 316 (318)
T KOG0530|consen 285 RKAVKLYEDLAIKVDPIRKNYWRHKQSQLSTA 316 (318)
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhhcccc
Confidence 12667777788 99999999999999888753
No 3
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=314.32 Aligned_cols=246 Identities=22% Similarity=0.291 Sum_probs=194.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC---------C
Q 045108 75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ---------L 145 (425)
Q Consensus 75 ~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~---------~ 145 (425)
..+....|+.+..+|+++.. .++++.+++++|..+|..||++||+|||||.++.... .
T Consensus 21 ~~~k~~~~~~~~s~i~~~r~-------------~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek 87 (421)
T KOG0529|consen 21 RAFKAGQLRSLFSIIQKKRE-------------AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEK 87 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------------ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHH
Confidence 34557788889888887644 4688999999999999999999999999999887643 1
Q ss_pred cccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchh
Q 045108 146 LPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225 (425)
Q Consensus 146 ~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~ 225 (425)
...+.+||.++..+|..|||+|.+||||+|+|++.... .|..||++|+++++.||||||||+|||||+.+...+
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 23578999999999999999999999999999986542 489999999999999999999999999999987642
Q ss_pred --hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHH
Q 045108 226 --QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWL 303 (425)
Q Consensus 226 --~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~ 303 (425)
...+|+++|+++|..|++||||||||..+|..+.... .+|. .-....+..|++++.++|.++|+++|+|+
T Consensus 162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-------~~g~-~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-------ADGN-FMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc-------ccCc-cCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 4689999999999999999999999999999886541 1110 11246789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHh
Q 045108 304 HRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHS 350 (425)
Q Consensus 304 yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~ 350 (425)
|+|+|+..-.+.-. .. +|...-.........-..+..|+.+|++
T Consensus 234 Y~rWLl~~~~~~~~--~~-~S~s~~ls~~~~~p~~~~l~~e~~~v~~ 277 (421)
T KOG0529|consen 234 YHRWLLGRGMRREC--YI-VSHSALLSESFSEPLIKYLRSEIGLVQS 277 (421)
T ss_pred ehHHhhcccccccc--cc-cccccccccccCCccHHHHHHHhhhhhh
Confidence 99999986211100 00 0111001111222234667888888887
No 4
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=297.11 Aligned_cols=267 Identities=16% Similarity=0.213 Sum_probs=198.5
Q ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-----CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108 109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-----LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN 183 (425)
Q Consensus 109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-----~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~ 183 (425)
.+++.++|+.|..++..||++||+||||+.++.+.. ....+..||.|+..++.-|||+|++||||+|+|+.....
T Consensus 45 keys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~ 124 (328)
T COG5536 45 KEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKP 124 (328)
T ss_pred hhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCc
Confidence 589999999999999999999999999999998821 124578999999999999999999999999999987542
Q ss_pred cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc----hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT----REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL 259 (425)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~----~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~ 259 (425)
.|..|+.++.++++.||||||+|+||+|++.+.. ......|++++...|..|+.|+||||||..++..+.
T Consensus 125 ------~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~ 198 (328)
T COG5536 125 ------SWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRF 198 (328)
T ss_pred ------ccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999995532 235789999999999999999999999988877765
Q ss_pred ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH-HHHHHhhhccCcCCCCCCCCCchhhHH
Q 045108 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY-LIKHIATHLLGVSCQSKPKASVDIDID 338 (425)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~ 338 (425)
..+. +.....+++||++..++|..+|.|+|+|.|.|+++.. ..... +.+.+.
T Consensus 199 ~~~~-----------visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~----------------~~~e~v 251 (328)
T COG5536 199 NRGD-----------VISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIV----------------MIGEKV 251 (328)
T ss_pred hhcc-----------cchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHH----------------HHHHHH
Confidence 4311 1112358999999999999999999999999999876 22111 122344
Q ss_pred HHHHHHHHHHH--hhhccCCCCcchhHHHhHHH--HHHHHHHHhhhhcccccchhhhhhhcchh-hHHHHHhhhCCCccc
Q 045108 339 SLMDHELCLVH--SCSTTIPDANFEDFQAQAIH--SAAYMLWLTKQIPEYQGINIQEKLQAGAG-DLMRMLKRSCPDRSS 413 (425)
Q Consensus 339 ~~l~~E~~lv~--~~~~~~p~d~~~~~~~qs~~--~~~y~~WL~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~p~r~~ 413 (425)
+.|.+++.++. +.-..-|+|- ++-.+++ ..+.+.|..+- .+ +. ... .+..++.++||.|+|
T Consensus 252 ~~L~k~~~iin~~el~l~~ken~---~~l~~~l~lE~l~~~~~~~~--te-------~d--~e~~alv~~~i~~DP~Rr~ 317 (328)
T COG5536 252 EDLGKYIVIINGKELDLGPKENL---PCLHSLLELEFLCHAEKALL--TE-------RD--IEQKALVELAIKVDPARRN 317 (328)
T ss_pred HHHHhhheeccccccccCCcccc---HHHHHHHHHHHHHHHhhcCc--ch-------hH--HHHHHHHHHHHhcChHHHH
Confidence 55566655554 3333333331 1223321 22222333222 11 11 111 245567799999999
Q ss_pred hhhhhhccC
Q 045108 414 LWDYLVGYH 422 (425)
Q Consensus 414 ~w~~~~~~~ 422 (425)
+|..+.+.+
T Consensus 318 ~y~~l~~r~ 326 (328)
T COG5536 318 LYSTLHERF 326 (328)
T ss_pred HHHHHHhhc
Confidence 999887643
No 5
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=297.21 Aligned_cols=193 Identities=23% Similarity=0.310 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc--cc--hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchh
Q 045108 150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN--CS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE 225 (425)
Q Consensus 150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~--~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~ 225 (425)
.+.+.++..+|..||..|++|||||-++...... .+ ..+..+.+||.+++.+++.+||.|.||+||+|++++-+.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 5569999999999999999999999999865441 11 2456899999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 226 QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 226 ~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
+|..||+.|.++++.||+|||||||||||+...... .....+|++|++++|..+|+|+|+||||
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~----------------~~~~~~El~ftt~~I~~nfSNYsaWhyR 189 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS----------------RNLEKEELEFTTKLINDNFSNYSAWHYR 189 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc----------------cccchhHHHHHHHHHhccchhhhHHHHH
Confidence 899999999999999999999999999999875321 1246899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhh
Q 045108 306 RFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQI 381 (425)
Q Consensus 306 r~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~ 381 (425)
..+++.+...-+ +|. .-....|..|+++|++|+||||+|+| +|+|++||+++.
T Consensus 190 s~lL~~l~~~~~-~g~-------------~~~~~~l~sEle~v~saiFTdp~DqS---------~WfY~rWLl~~~ 242 (421)
T KOG0529|consen 190 SLLLSTLHPKEA-DGN-------------FMPKELLQSELEMVHSAIFTDPEDQS---------CWFYHRWLLGRG 242 (421)
T ss_pred HHHHHHhccccc-cCc-------------cCCHHHHHHHHHHHHHHHhcCccccc---------eeeehHHhhccc
Confidence 999987654321 110 01247799999999999999999955 677999999983
No 6
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-34 Score=267.63 Aligned_cols=193 Identities=17% Similarity=0.314 Sum_probs=164.4
Q ss_pred cHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhH
Q 045108 148 ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (425)
Q Consensus 148 ~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (425)
-...+|++|+.++..||..|++||||+-|+.+......+....+.+||.+|+.+++.+||||+.|+||+|+++..+.+.|
T Consensus 47 ys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~ 126 (328)
T COG5536 47 YSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSW 126 (328)
T ss_pred cCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCccc
Confidence 34789999999999999999999999999998443333446789999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 228 LNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 228 ~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
..|+..++++++.|++||||||||++++....... -.+.+..|++|++.+|++||.|.|||+||-.
T Consensus 127 ~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~--------------N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 127 GRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLF--------------NFSDLKHELEYTTSLIETDIYNNSAWHHRYI 192 (328)
T ss_pred chhHHHHHHHhcccccccceeeeEeeeeecchhhc--------------cchhHHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence 99999999999999999999999999996642211 1346889999999999999999999999977
Q ss_pred HHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhh
Q 045108 308 LSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQ 380 (425)
Q Consensus 308 Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~ 380 (425)
++..+... ++ +. ...++.+|++++.+++|++|+|+| .|.|++|+.+.
T Consensus 193 ~~~~~~~~-----~~----------vi--sqk~l~~eL~~i~~~if~~p~~~S---------~w~y~r~~~~~ 239 (328)
T COG5536 193 WIERRFNR-----GD----------VI--SQKYLEKELEYIFDKIFTDPDNQS---------VWGYLRGVSSE 239 (328)
T ss_pred HHHHHHhh-----cc----------cc--hHHHHHHHHHHHHhhhhcCccccc---------hhhHHHHHhcc
Confidence 77766541 12 12 234899999999999999998854 68899999976
No 7
>PLN02789 farnesyltranstransferase
Probab=99.97 E-value=6.9e-31 Score=261.74 Aligned_cols=202 Identities=20% Similarity=0.344 Sum_probs=177.3
Q ss_pred HHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108 121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (425)
Q Consensus 121 ~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (425)
+.|...|++..||.+.|.++.... ..+++|.+++.+|..||++|++|+||++++..++. .+++||.++.+
T Consensus 28 ~~i~y~~~~~~a~~~~ra~l~~~e---~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-------~l~eeL~~~~~ 97 (320)
T PLN02789 28 VPIAYTPEFREAMDYFRAVYASDE---RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-------DLEEELDFAED 97 (320)
T ss_pred cceeeCHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-------hHHHHHHHHHH
Confidence 457788999999999999999884 67999999999999999999999999999998853 37999999999
Q ss_pred HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108 201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV 280 (425)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (425)
+++.+||||++|+||+|++..++.....+|+++++++++.||+|+|||+||++++..+ + .
T Consensus 98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~-------------------~ 157 (320)
T PLN02789 98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-G-------------------G 157 (320)
T ss_pred HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-h-------------------h
Confidence 9999999999999999999998864457899999999999999999999999999885 1 3
Q ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108 281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360 (425)
Q Consensus 281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~ 360 (425)
+++||++++++|+.+|+|.|+|+||.+++..+.. . + .....+++|++++..++.++|++++
T Consensus 158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~-l----~--------------~~~~~~e~el~y~~~aI~~~P~N~S 218 (320)
T PLN02789 158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL-L----G--------------GLEAMRDSELKYTIDAILANPRNES 218 (320)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc-c----c--------------cccccHHHHHHHHHHHHHhCCCCcC
Confidence 8899999999999999999999999998865311 0 0 0113467899999999999999966
Q ss_pred hhHHHhHHHHHHHHHHHhhh
Q 045108 361 EDFQAQAIHSAAYMLWLTKQ 380 (425)
Q Consensus 361 ~~~~~qs~~~~~y~~WL~~~ 380 (425)
+|.|+.|+...
T Consensus 219 ---------aW~Yl~~ll~~ 229 (320)
T PLN02789 219 ---------PWRYLRGLFKD 229 (320)
T ss_pred ---------HHHHHHHHHhc
Confidence 78899999966
No 8
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-30 Score=242.14 Aligned_cols=193 Identities=17% Similarity=0.315 Sum_probs=166.2
Q ss_pred ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108 128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (425)
Q Consensus 128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (425)
++-.+.-|-|.++.... ...++|.+|+.++..||-+||+|+|||-++.++.. .+.+||+++..+++.+||
T Consensus 41 ~fr~~m~YfRAI~~~~E---~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------dL~~El~~l~eI~e~npK 110 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNE---KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------DLNKELEYLDEIIEDNPK 110 (318)
T ss_pred hHHHHHHHHHHHHhccc---cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHhCcc
Confidence 45556667677777664 45899999999999999999999999999999876 489999999999999999
Q ss_pred chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHH
Q 045108 208 NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDW 287 (425)
Q Consensus 208 NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~ 287 (425)
||.+|+||+|+++.++.+.. +||+++..++..|..|||||+||+|++..+ ..++.||.|
T Consensus 111 NYQvWHHRr~ive~l~d~s~-rELef~~~~l~~DaKNYHaWshRqW~~r~F--------------------~~~~~EL~y 169 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSF-RELEFTKLMLDDDAKNYHAWSHRQWVLRFF--------------------KDYEDELAY 169 (318)
T ss_pred chhHHHHHHHHHHHhcCccc-chHHHHHHHHhccccchhhhHHHHHHHHHH--------------------hhHHHHHHH
Confidence 99999999999999986433 999999999999999999999999999875 248999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhH
Q 045108 288 NESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQA 367 (425)
Q Consensus 288 ~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs 367 (425)
+.++|+.+-.|.|||+||-|++.... + +. .+..++.|+.++.+.+.+.|+++|
T Consensus 170 ~~~Lle~Di~NNSAWN~Ryfvi~~~~-------~-----------~~--~~~~le~El~yt~~~I~~vP~NeS------- 222 (318)
T KOG0530|consen 170 ADELLEEDIRNNSAWNQRYFVITNTK-------G-----------VI--SKAELERELNYTKDKILLVPNNES------- 222 (318)
T ss_pred HHHHHHHhhhccchhheeeEEEEecc-------C-----------Cc--cHHHHHHHHHHHHHHHHhCCCCcc-------
Confidence 99999999999999999998875421 0 11 125689999999999999999966
Q ss_pred HHHHHHHHHHhhh
Q 045108 368 IHSAAYMLWLTKQ 380 (425)
Q Consensus 368 ~~~~~y~~WL~~~ 380 (425)
+|-|++=+++.
T Consensus 223 --aWnYL~G~l~~ 233 (318)
T KOG0530|consen 223 --AWNYLKGLLEL 233 (318)
T ss_pred --HHHHHHHHHHh
Confidence 77888777755
No 9
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.93 E-value=1.3e-09 Score=71.18 Aligned_cols=30 Identities=40% Similarity=0.738 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Q 045108 193 RESELVEKIAERSKMNYRAWNHRCWLVSFM 222 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~ 222 (425)
+||++|..++..+||||+||+||+||++++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 589999999999999999999999999875
No 10
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=98.78 E-value=8.5e-09 Score=67.25 Aligned_cols=30 Identities=37% Similarity=0.831 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhCCCchhhhhHHHHHHHHH
Q 045108 151 DELRLSAVVLSHSPKSEQAWSHRRWVINMI 180 (425)
Q Consensus 151 ~EL~~~~~lL~~~PKsy~~W~hRrwll~~l 180 (425)
+||.++..++..+||+|++|+||+|+++++
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 599999999999999999999999999876
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.76 E-value=1.5e-06 Score=94.45 Aligned_cols=160 Identities=8% Similarity=0.014 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....+|.++|.+..+|..+..++... ..+++.+..+..++..+|+++.+|.+|..+....++ +
T Consensus 347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~ 415 (615)
T TIGR00990 347 HLEALADLSKSIELDPRVTQSYIKRASMNLEL---GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--------F 415 (615)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence 45677777777777887777777777776665 367777777777777778777777777777666544 5
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
++.+..+.++++.+|.|..+|..+..+...++. +++.+..+.+.+..+|.+..+|.++..++... +
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g----------- 481 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFRRCKKNFPEAPDVYNYYGELLLDQ-N----------- 481 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-c-----------
Confidence 677777777778888777777777777766654 56777777777777777777777776665542 1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
.+++.+.+..+++..+|.+...|..
T Consensus 482 --------~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 482 --------KFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred --------CHHHHHHHHHHHHhcCCcccccccc
Confidence 1566677777777777776555443
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.66 E-value=4.8e-06 Score=90.46 Aligned_cols=167 Identities=13% Similarity=-0.029 Sum_probs=143.3
Q ss_pred chHHHHHHHHHHHHh---CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108 111 VAIEVMIHSKALLLL---SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~---npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~ 187 (425)
..++++.....++.. +|....+|+.++.+.... ..+++++..+..++..+|.+..+|..+.+++..++.
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~---g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~----- 380 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK---GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD----- 380 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-----
Confidence 345778888888876 488889999999988776 478999999999999999999999999998887654
Q ss_pred HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD 267 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~ 267 (425)
+++.+..+.++++.+|.+..+|.+++.+....+. +++.+..+++.+..+|.|..+|..+..++..+ +
T Consensus 381 ---~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~-g------- 447 (615)
T TIGR00990 381 ---PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE--FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE-G------- 447 (615)
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC-C-------
Confidence 6889999999999999999999999999887765 78999999999999999999999888776653 1
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
.+++.+....+.+..+|.+..+|+++..++.
T Consensus 448 ------------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 448 ------------SIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred ------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 2677788889999999999999988755543
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=1.6e-06 Score=76.71 Aligned_cols=126 Identities=10% Similarity=-0.114 Sum_probs=111.5
Q ss_pred HHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHH
Q 045108 117 IHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESE 196 (425)
Q Consensus 117 ~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~ 196 (425)
.+...+|.++|++ +..+...+... +.+.+++..+..++..+|.++.+|..+.-++..++. +++.+.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~ 79 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQE---GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--------YTTAIN 79 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--------HHHHHH
Confidence 3567889999997 44567777666 478999999999999999999999999999998876 689999
Q ss_pred HHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 197 LVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
++.++++.+|.+..+|.+++.++..++. ..+.+..+.+.+..+|.|.-.|..|..+...+
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999998886 68899999999999999999999988776543
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.29 E-value=2.6e-05 Score=69.07 Aligned_cols=124 Identities=8% Similarity=-0.102 Sum_probs=105.5
Q ss_pred HHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHH
Q 045108 154 RLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQ 233 (425)
Q Consensus 154 ~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~ 233 (425)
.+++.++..+|.+ |.++.+++.+.+. +.+.+.++..++..+|.++.+|..++-++..++. +.+.+..
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~ 80 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGD--------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE--YTTAINF 80 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHH
Confidence 4667888999986 5567777766554 6889999999999999999999999999988776 7899999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 234 ~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
+.+.+..+|.|..+|.++..++..+ + -.++.+.....+|...|.|.-.|..+.....
T Consensus 81 y~~Al~l~p~~~~a~~~lg~~l~~~-g-------------------~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 81 YGHALMLDASHPEPVYQTGVCLKMM-G-------------------EPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999988764 2 1567888889999999999999988765543
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=98.28 E-value=7.6e-05 Score=80.28 Aligned_cols=166 Identities=7% Similarity=-0.041 Sum_probs=128.2
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC------CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ------LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC 184 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~------~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~ 184 (425)
..++++.....++.++|++..+|.....+..... ....+.+++.....++..+|++..+|..+..++...+.
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~-- 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE-- 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Confidence 3468899999999999999999977765433211 12347889999999999999999999988877765543
Q ss_pred chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccc
Q 045108 185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCH 264 (425)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~ 264 (425)
+++.+..++++++.+|.|..+|.+..+++...+. +++.+..+++.+..+|.+..++.++..++... +
T Consensus 354 ------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~-g---- 420 (553)
T PRK12370 354 ------YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--LEEALQTINECLKLDPTRAAAGITKLWITYYH-T---- 420 (553)
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc-c----
Confidence 6889999999999999999999999999988876 78899999999999999876655544332221 1
Q ss_pred cCCCCCCCchhhhhHHHHHHHHHHHHHHhhc-CCCccHHHHHH
Q 045108 265 IQDNNSSGYFVETYQVWKEELDWNESLIKRY-VGREALWLHRR 306 (425)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~-p~neSaW~yrr 306 (425)
-+++.+....+++..+ |++..++.++.
T Consensus 421 ---------------~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 421 ---------------GIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred ---------------CHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 1466777788888776 55555555543
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=8.8e-05 Score=63.70 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=109.0
Q ss_pred HHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108 118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (425)
Q Consensus 118 ~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (425)
....++..+|++..+-..+...+... ..+.+++.....++..+|.+..+|..+..++...+. +...+..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~ 73 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQ---GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--------YEEAIDA 73 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 45688899999998877777766665 478999999999999999999999999998887765 5788889
Q ss_pred HHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
+.++++.+|.+...|.+++++....+. +...+...++.++.+|.+..++-+++.+..
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGE--PESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 999999999999999999999888765 788899999999999999998888776644
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=98.19 E-value=0.00012 Score=78.80 Aligned_cols=161 Identities=11% Similarity=0.036 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++.++|++..+|..+..++... ..+++++..+..++..+|.++.+|.+...++...+. +
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--------~ 388 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIH---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--------L 388 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 57899999999999999999999999887766 378999999999999999999999999998887765 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc-CCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH-VADNSCFHYHRRLMIWNLEGFCHIQDNNS 270 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d-~~N~SaW~yR~~ll~~l~~~~~~~~~~~~ 270 (425)
++.+..++++++.+|.+..++.+..++.-..+. +++.+..+.+.+..+ |.+-.++.+...++... +.
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~-G~--------- 456 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK-GK--------- 456 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC-CC---------
Confidence 889999999999999987776666666555444 678889999999886 55555666666555432 21
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
.++......++....|.+..++...
T Consensus 457 ----------~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 457 ----------HELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred ----------HHHHHHHHHHhhhccchhHHHHHHH
Confidence 3455555666666677766666543
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.19 E-value=7.2e-05 Score=74.06 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
..+++.....++.++|++..+|+.++.++...+ .+++++.....++..+|++..+|..|..++...+. +
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--------~ 148 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--------Y 148 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 356778888899999999999999998888774 78999999999999999999999999888876654 6
Q ss_pred HHHHHHHHHHHHhcCCchh--hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108 192 ERESELVEKIAERSKMNYR--AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF 248 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~--AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW 248 (425)
++.++.+.++++.+|.+.. .|.+ +..... ...+.+....+.+...+.+..+|
T Consensus 149 ~eA~~~~~~al~~~P~~~~~~~~~~---l~~~~~--~~~~A~~~l~~~~~~~~~~~~~~ 202 (296)
T PRK11189 149 ELAQDDLLAFYQDDPNDPYRALWLY---LAESKL--DPKQAKENLKQRYEKLDKEQWGW 202 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH---HHHccC--CHHHHHHHHHHHHhhCCccccHH
Confidence 8889999999999998863 2221 111111 25566777766665544444334
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.10 E-value=0.00024 Score=70.30 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHH---hCCcc-HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108 112 AIEVMIHSKALLL---LSCDF-ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 112 ~~~~L~~t~~lLl---~npe~-~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~ 187 (425)
.+..+.....+|. ++|+. ..+|..|+.+....+ ...+++.....++..+|+++.+|+++..++...+.
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~----- 113 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG---LRALARNDFSQALALRPDMADAYNYLGIYLTQAGN----- 113 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----
Confidence 4555666666774 44444 678999999888774 67899999999999999999999999998888765
Q ss_pred HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
++..+....++++.+|.+..+|..|+.++...+. +++.++.+++.+..+|.|.
T Consensus 114 ---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 114 ---FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence 6888999999999999999999999999987765 7899999999999999986
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.89 E-value=0.0036 Score=68.87 Aligned_cols=160 Identities=9% Similarity=-0.092 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++....++..+|++..+|.....++... ..+.+.+.++..++..+|.+..+|..+..+....+. +
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~ 209 (899)
T TIGR02917 141 LELAQKSYEQALAIDPRSLYAKLGLAQLALAE---NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN--------I 209 (899)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC--------H
Confidence 35677777777777887777777776666655 367777777777777788777777777766655443 5
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
+..+....++++.+|.+..+|..+..++...+. +++....++.++..+|.+-.++..+..+.... +
T Consensus 210 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------- 275 (899)
T TIGR02917 210 ELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHADALLKKAPNSPLAHYLKALVDFQK-K----------- 275 (899)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-c-----------
Confidence 667777777777778777777777777665554 56667777777777776665555544433221 1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
-+++.+....+.+..+|++..++..
T Consensus 276 --------~~~~A~~~~~~~l~~~~~~~~~~~~ 300 (899)
T TIGR02917 276 --------NYEDARETLQDALKSAPEYLPALLL 300 (899)
T ss_pred --------CHHHHHHHHHHHHHhCCCchhHHHH
Confidence 1344555555666666665544443
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.88 E-value=0.005 Score=67.74 Aligned_cols=127 Identities=15% Similarity=-0.083 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++...|++..+|+....+....+ .+++....+..++..+|++..+|.....+....+. +
T Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------~ 515 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG---DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN--------P 515 (899)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC--------H
Confidence 466777777777777777777777777766653 56777777777777777777777766655544332 4
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYH 251 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR 251 (425)
.+.+..+.++++.+|.+..+|.....+....+. ..+.+..+.+.+..+|.+...+...
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l 573 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN--EEEAVAWLEKAAELNPQEIEPALAL 573 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchhHHHHH
Confidence 556666666666666666666665555544433 4455555555555666555554443
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.88 E-value=0.0041 Score=56.54 Aligned_cols=160 Identities=10% Similarity=-0.046 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++....++..+|++..+|..+..+.... ..+.+.+.....++..+|++..+|.....++...+. +
T Consensus 47 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~--------~ 115 (234)
T TIGR02521 47 LEVAKENLDKALEHDPDDYLAYLALALYYQQL---GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK--------Y 115 (234)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------H
Confidence 46788899999999999999999999888777 478999999999999999999999988888776554 6
Q ss_pred HHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108 192 ERESELVEKIAERS--KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN 269 (425)
Q Consensus 192 ~~EL~~~~~~l~~~--pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~ 269 (425)
.+.+..+.+++... +.+..+|.....+....+. +......+.+.+..+|.+.-+|..+..+.... +
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~--------- 183 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLTRALQIDPQRPESLLELAELYYLR-G--------- 183 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc-C---------
Confidence 77888888888743 5566677777776665554 67889999999999999877777665554432 1
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 270 SSGYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
-+++.+.+..+.+...|.+...|..
T Consensus 184 ----------~~~~A~~~~~~~~~~~~~~~~~~~~ 208 (234)
T TIGR02521 184 ----------QYKDARAYLERYQQTYNQTAESLWL 208 (234)
T ss_pred ----------CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 1455666677777777776655553
No 23
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.80 E-value=0.00076 Score=63.01 Aligned_cols=126 Identities=6% Similarity=-0.034 Sum_probs=108.5
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHH-HHHhhccchhH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI-NMISRNCSTLQ 188 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll-~~l~~~~~~~~ 188 (425)
...++++.....+|..||++..+|...+++....+ .+.+++..+..++..+|++..+|....-++ ...+..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g---~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~----- 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN---DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH----- 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-----
Confidence 34578889999999999999999999999998874 789999999999999999999999888765 333321
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS 246 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S 246 (425)
...+...++.++++.+|+|-.++..........+. +.+.+...+++++.+|.+-+
T Consensus 125 -~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 125 -MTPQTREMIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred -CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcc
Confidence 13788899999999999999999999999887765 78999999999999888663
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.77 E-value=0.0013 Score=72.26 Aligned_cols=132 Identities=8% Similarity=-0.086 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHH----HHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILM----DELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~----~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~ 187 (425)
.++++.....++..+|++..+++....++...+ .+. +.+..+..++..+|.+..+|.....++...+.
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G---~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~----- 299 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSG---RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ----- 299 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-----
Confidence 467888899999999999999999888887764 344 36899999999999999999999888887665
Q ss_pred HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
+++.+..+.++++.+|.|-.++.+..-++...+. +++.++.+.+.+..+|.+...+.++..++.
T Consensus 300 ---~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 300 ---NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5788899999999999999999998888877765 678888899999999987654444444443
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.76 E-value=0.0015 Score=74.78 Aligned_cols=156 Identities=6% Similarity=-0.162 Sum_probs=126.6
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.+...++..+|++..+...-...+... ..+.+++..+..++..+|. ..+|.....++.+++.
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~---Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~-------- 624 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP---GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN-------- 624 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC--------
Confidence 346688888888999988876554322222222 4789999999999999996 8999888888887765
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS 270 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~ 270 (425)
.++.+..+.++++.+|.|..++....+++...+. .++.++.+.+.+..+|.|..+|..+..++..+ +
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~--~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l-G---------- 691 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGD--IAQSREMLERAHKGLPDDPALIRQLAYVNQRL-D---------- 691 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C----------
Confidence 6888999999999999999999999999988776 68889999999999999999999999988764 2
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108 271 SGYFVETYQVWKEELDWNESLIKRYVGREA 300 (425)
Q Consensus 271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neS 300 (425)
-+++.+.+..++|..+|++-.
T Consensus 692 ---------d~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 692 ---------DMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred ---------CHHHHHHHHHHHHhcCCCCch
Confidence 156667788888888887644
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.0011 Score=70.58 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=117.3
Q ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhH
Q 045108 109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ 188 (425)
Q Consensus 109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~ 188 (425)
.+-.+.++.+.+.+|.++|.||-||.-=+.+..+. ..++.+.-.+.+++.+||.|..+=.|=.-+..+++.
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq---ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~------ 538 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ---EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR------ 538 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc---chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh------
Confidence 34567899999999999999999999888777666 468889999999999999999999999988888876
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
-++.|.+.++|+..+|||-++=.||.-++..+++ ..++|.-.+++-..-|.+-+..+-...+..++
T Consensus 539 --~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 539 --KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR--YVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred --hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999987776 67788888888888888888876666665554
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.58 E-value=0.0074 Score=66.44 Aligned_cols=132 Identities=8% Similarity=-0.104 Sum_probs=97.8
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
..+.+.+..+..++..+|.+..++.....++...+... ......+..+.++++.+|.+..+|....+++...+.
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~----eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-- 299 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR----EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ-- 299 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--
Confidence 35677777888888888888888877766666554421 111246888999999999999999999998887765
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
+++.+..+++.+..+|.|..++.++..++... + -+++.+....+++..+|.+-. |.++
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~-G-------------------~~~eA~~~l~~al~~~P~~~~-~~~~ 357 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQV-G-------------------QYTAASDEFVQLAREKGVTSK-WNRY 357 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHhCccchH-HHHH
Confidence 67888999999999999998888877666542 1 156667777888888888654 4443
No 28
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.58 E-value=0.0043 Score=53.11 Aligned_cols=126 Identities=9% Similarity=-0.021 Sum_probs=99.6
Q ss_pred HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108 155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS 234 (425)
Q Consensus 155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (425)
.+..++..+|++..+=.-+...+...+. +.+.+....+++..+|.|-.+|..+..+...++. +...+..+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~ 74 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGR--------YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE--YEEAIDAY 74 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4678889999997764444444443332 6788899999999999999999999999877665 67888899
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
.+.+..+|.+...|.++..+.... + -+++.+.+.+..+..+|++...+-+.+.+..
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLAL-G-------------------EPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 999999999999999988876653 1 1567778888999999999998887766543
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.0012 Score=70.27 Aligned_cols=126 Identities=14% Similarity=0.046 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHH
Q 045108 150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLN 229 (425)
Q Consensus 150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~ 229 (425)
+.++.....+|..+|..|-+|.--.-+..+..+ ++...-...+|++++|+|--.=+|-+-+..+++. .+.
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek--------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~ 541 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK--------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDK 541 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhH
Confidence 344444444444444444444443333332221 2333334444445555444444444444444433 567
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 230 ELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 230 EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
.|++++++|.+||.|-.+=.+|..++..+.. +.++|...+++-+.-|.+-++.+-.
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--------------------~~eal~~LEeLk~~vP~es~v~~ll 597 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRASILFSLGR--------------------YVEALQELEELKELVPQESSVFALL 597 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--------------------hHHHHHHHHHHHHhCcchHHHHHHH
Confidence 8999999999999999999999998887522 3444555555555678877765544
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.52 E-value=0.0017 Score=74.25 Aligned_cols=124 Identities=9% Similarity=0.000 Sum_probs=111.2
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
...++++.....++.++|+ ..+|.....++...+ .+++++..+..++..+|++..+++...+++...+.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~------- 658 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD------- 658 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------
Confidence 3457889999999999997 899999998888874 78999999999999999999999999999988765
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
.++.+.++.++++.+|.+..+|.++.+++..++. +++.+..+++.+..+|.+...
T Consensus 659 -~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 659 -IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchh
Confidence 5889999999999999999999999999999886 788899999999999977543
No 31
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0023 Score=65.20 Aligned_cols=101 Identities=9% Similarity=-0.071 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.+...+|.++|++..+|..|..++...+ .+.+++..+..++..+|++..+|..+..++.+++.
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g---~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-------- 85 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLG---NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-------- 85 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--------
Confidence 3478999999999999999999999999988874 79999999999999999999999999988888765
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM 222 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~ 222 (425)
+...+..+.++++.+|.|-.+......+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999988766655554444
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.014 Score=60.64 Aligned_cols=188 Identities=11% Similarity=0.084 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHH
Q 045108 115 VMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERE 194 (425)
Q Consensus 115 ~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~E 194 (425)
+-...+.+|.++|.+.....+|..++.... .-++-...++.+...+|.++.+++||..+..-+.. +++.
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~---~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------~e~A 413 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADEN---QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------YEEA 413 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhh---ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------HHHH
Confidence 334556777777777777666665554442 34556677778888888888888888766555443 5677
Q ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCch
Q 045108 195 SELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYF 274 (425)
Q Consensus 195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~ 274 (425)
+.-..++...+|.|-.+.-..+.++-+.+. +.+-+......++.=|+=--+.++-.-+|.-
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k--~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----------------- 474 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHK--IAESMKTFEEAKKKFPNCPEVYNLFAEILTD----------------- 474 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-----------------
Confidence 777778888888887777777766655443 5566666777777777777777766555432
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCC------CccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHH
Q 045108 275 VETYQVWKEELDWNESLIKRYVG------REALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLV 348 (425)
Q Consensus 275 ~~~~~~~~~EL~~~~~~I~~~p~------neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv 348 (425)
..-+...+++.+.+|++.|. |-..-.|.-.++..|.+ -+.+=+.|+
T Consensus 475 ---qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~-------------------------d~~~a~~Ll 526 (606)
T KOG0547|consen 475 ---QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKE-------------------------DINQAENLL 526 (606)
T ss_pred ---HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhh-------------------------hHHHHHHHH
Confidence 12367788888999999998 66666665555443321 134556789
Q ss_pred HhhhccCCCCcc
Q 045108 349 HSCSTTIPDANF 360 (425)
Q Consensus 349 ~~~~~~~p~d~~ 360 (425)
..|+..||.++.
T Consensus 527 ~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 527 RKAIELDPKCEQ 538 (606)
T ss_pred HHHHccCchHHH
Confidence 999999997643
No 33
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.41 E-value=0.0049 Score=57.55 Aligned_cols=126 Identities=5% Similarity=-0.019 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHH-Hhhchh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV-SFMTRE 225 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll-~~~~~~ 225 (425)
...++.+..+...|..+|++...|.....+....++ +.+.+..+.++++.+|+|-.+|....-++ ...+..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------YDNALLAYRQALQLRGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence 456788899999999999999999999888877665 68999999999999999999999988765 444432
Q ss_pred hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108 226 QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA 300 (425)
Q Consensus 226 ~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS 300 (425)
...+..+.+++.++.||.|..++..+....... + -+++.+.+.++++..+|.+-+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~-g-------------------~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQ-A-------------------DYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHhhCCCCcc
Confidence 347889999999999999999999998887653 2 267778888888888877653
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.39 E-value=0.016 Score=67.86 Aligned_cols=139 Identities=8% Similarity=-0.012 Sum_probs=109.3
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh--hhH-----HHHHHHHHhhc
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA--WSH-----RRWVINMISRN 183 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~--W~h-----Rrwll~~l~~~ 183 (425)
..++++.....+|..+|++..++.....++...+ .+++++..+..++..+|++... |.. |-|+.......
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g---~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQG---DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 3478999999999999999999999998888774 7899999999999999998743 421 22232221110
Q ss_pred cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM 255 (425)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll 255 (425)
.. ....+.+.+..+.++++.+|.+..++.....+....+. +++.++.+++.+..+|.|..++.....+.
T Consensus 361 ~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 361 AL-KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00 01236889999999999999999999999888877665 78899999999999999999987766654
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.35 E-value=0.012 Score=65.03 Aligned_cols=117 Identities=9% Similarity=-0.094 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.+...++.+.|+|..|+..+..+|.... .+++++.....+|...|+++++=+++.-++.+++.
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~-------- 169 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ---GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ-------- 169 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--------
Confidence 4588999999999999999999999999999884 78999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL 240 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~ 240 (425)
+++.+++.++++..+|.+-.+|.-+.-++..++. .++....+.+.+..
T Consensus 170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~~a~~~ 217 (694)
T PRK15179 170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQAGLDA 217 (694)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 6899999999999999999999999999998875 34444444444443
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0065 Score=63.58 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHH
Q 045108 81 VYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVL 160 (425)
Q Consensus 81 ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL 160 (425)
-|..|...|.+++..+|.....+ .....++++........++|+-.+.--.++.-.... .++..++.-.+.++
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls----~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~---gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLS----KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK---GDYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHH----HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc---cCHHHHHHHHHHHH
Confidence 45666677777777666522111 122357788888999999999977777777655555 48999999999999
Q ss_pred hhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108 161 SHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL 240 (425)
Q Consensus 161 ~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~ 240 (425)
.++|++.++...|.-+..+|.. +...|.-|.++++.+|.+.-+|....-++..|.. +...++.+.+.++.
T Consensus 386 kr~P~Da~lYsNRAac~~kL~~--------~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~--ydkAleay~eale~ 455 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYLKLGE--------YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE--YDKALEAYQEALEL 455 (539)
T ss_pred hcCCchhHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 9999999999999999999886 5788888999999999999999999999888765 88999999999999
Q ss_pred cCCChhH
Q 045108 241 HVADNSC 247 (425)
Q Consensus 241 d~~N~Sa 247 (425)
||+|--+
T Consensus 456 dp~~~e~ 462 (539)
T KOG0548|consen 456 DPSNAEA 462 (539)
T ss_pred CchhHHH
Confidence 9887643
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.22 E-value=0.047 Score=55.17 Aligned_cols=159 Identities=10% Similarity=-0.110 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh--h-hHHHHHHHHHhhccchhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA--W-SHRRWVINMISRNCSTLQ 188 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~--W-~hRrwll~~l~~~~~~~~ 188 (425)
.++++.....++..+|.+..+++....++... +.+++++.....++..+|.+... . .+.......+..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 193 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQE---KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR------ 193 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh---chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC------
Confidence 46788888999999999999999888877766 47899999999999988876431 1 111111111111
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH-HHHHHHHHHHhhccccccCC
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC-FHYHRRLMIWNLEGFCHIQD 267 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa-W~yR~~ll~~l~~~~~~~~~ 267 (425)
..+.+.+.++.++++.+|.+..+|.....+....+. +.+.++.+.+++..+|.+... +.....++... +
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g------- 263 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-G------- 263 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-C-------
Confidence 236888899999999999999998887777766554 778899999999988876533 33322222221 1
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccH
Q 045108 268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREAL 301 (425)
Q Consensus 268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSa 301 (425)
-+++.+.+..+++..+|++..+
T Consensus 264 ------------~~~~A~~~l~~~~~~~p~~~~~ 285 (389)
T PRK11788 264 ------------DEAEGLEFLRRALEEYPGADLL 285 (389)
T ss_pred ------------CHHHHHHHHHHHHHhCCCchHH
Confidence 2556677788888889977543
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.20 E-value=0.0051 Score=62.64 Aligned_cols=103 Identities=8% Similarity=-0.035 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
..+.+++.+++.+|..+|.++.+|.+|..++.+++. +.+.+..+.++++.+|.+-.+|..++.++..++.
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-- 85 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------FTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-- 85 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--
Confidence 478999999999999999999999999999888765 6899999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL 259 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~ 259 (425)
+...+..+++.+..+|.|-.+......+..++.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999998888877766653
No 39
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.04 E-value=0.028 Score=60.04 Aligned_cols=167 Identities=11% Similarity=-0.042 Sum_probs=140.9
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
...++.+++.++|.++|.|..+-|.-+.+-... ..++++..|..++|..+|.+..+-+.-.-++++-++
T Consensus 335 ~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~---~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn-------- 403 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ---GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN-------- 403 (966)
T ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc--------
Confidence 457899999999999999999999888777765 367999999999999999999999999998887655
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS 270 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~ 270 (425)
+.+.+.+...++++.|.--.|.+.++-.+..++. ....++.+++.|..+|.--.|.+....+.+..
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~--v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs------------ 469 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD--VSAAIQCYTRAIQINPTFAEAHSNLASIYKDS------------ 469 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh--HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc------------
Confidence 7899999999999999999999999999988876 68899999999999998888888776554321
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
| -..+.++-...++.+.|.-.-+-+.+-..++
T Consensus 470 -G-------ni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 470 -G-------NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred -C-------CcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 1 1356677777888899999999998755444
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.02 E-value=0.12 Score=46.77 Aligned_cols=132 Identities=5% Similarity=-0.015 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhC--CCchhhhhHHHHHHHHHhhccchhH
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHS--PKSEQAWSHRRWVINMISRNCSTLQ 188 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~--PKsy~~W~hRrwll~~l~~~~~~~~ 188 (425)
..+++++....++..+|.+..++.....++... ..+.+.+..+..++... |....+|.....+....+.
T Consensus 80 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 150 (234)
T TIGR02521 80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ---GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD------ 150 (234)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC------
Confidence 346788999999999999999999988888776 47899999999998743 5556666666655554433
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM 255 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll 255 (425)
+.+....+.++++.+|.+..+|.....+....+. +++.+..+.+.+...+.+...+.....+.
T Consensus 151 --~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 151 --FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred --HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5788899999999999998888888777766654 67788888888888777766665444333
No 41
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.0074 Score=59.27 Aligned_cols=104 Identities=8% Similarity=-0.027 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
.++++++...+.++..+|++......|--+..+|+. +...++-|++++.+||.-.-||.--+.+.-.+++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-- 164 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-- 164 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc--
Confidence 479999999999999999999999999999999986 5788999999999999888899888877776665
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhc
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLE 260 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~ 260 (425)
+...++.+++.+++||.|-+.|......-.++..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 6788899999999999999999999888777543
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.024 Score=60.55 Aligned_cols=185 Identities=10% Similarity=-0.021 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
.-+++|..+..++.+.|++..||.-....+...+ +++.+...+..+|+.||..|.+=.+-.-+++..+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~---~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr-------- 199 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQG---DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR-------- 199 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcC---CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc--------
Confidence 3578999999999999999999999998888774 67889999999999999999999999988887665
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc-ccc-----
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG-FCH----- 264 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~-~~~----- 264 (425)
+.+.-.+..++++..|---=||+.-+-++..-+. ....+...++.+++||.--.|+-....|++.+..- +..
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 5677788899999999777899998888876554 67789999999999999989999999888765210 000
Q ss_pred --c--CCCCC-CCc----hhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 265 --I--QDNNS-SGY----FVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 265 --~--~~~~~-~~~----~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
. +.... -|. +-+ ...++-.++...++|+..|+-.-+.+..-..+
T Consensus 278 Al~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANAL 330 (966)
T ss_pred HHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence 0 00000 000 000 12456667778888888888888888754433
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.032 Score=58.19 Aligned_cols=162 Identities=9% Similarity=-0.039 Sum_probs=128.6
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
-+++..+....+..+||++..+.++|+.+..-+ ..+++++.-.+++...+|.+.-..-....++=+.. -
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL---~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~--------k 443 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL---QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH--------K 443 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH--------H
Confidence 456777888999999999999999999877766 47899999999999999999766665555554433 2
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC------ChhHHHHHHHHHHHhhccccc
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA------DNSCFHYHRRLMIWNLEGFCH 264 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~------N~SaW~yR~~ll~~l~~~~~~ 264 (425)
+.+-+...+.+.++.|++-.+.++-.-+|.- ..++...++.+++.+.+.|+ |--..-+...++.+..
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk----- 516 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTD--QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK----- 516 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-----
Confidence 6778889999999999999999887766632 23578999999999999999 7777777776665532
Q ss_pred cCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 265 IQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
.-+...++.+.++|+.||.-+-+---
T Consensus 517 --------------~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 517 --------------EDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred --------------hhHHHHHHHHHHHHccCchHHHHHHH
Confidence 12567788899999999997766543
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.86 E-value=0.15 Score=51.54 Aligned_cols=121 Identities=8% Similarity=-0.003 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch----hhhhHHHHHHHHHhhccchh
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE----QAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy----~~W~hRrwll~~l~~~~~~~ 187 (425)
.++++.....++..+|++..+|.....++... ..+.+.+.....++...+... .+|.....++.+.+
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g------ 121 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRR---GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG------ 121 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC------
Confidence 35688888899999999888888888777665 367778888777776432221 22222222222221
Q ss_pred HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
.+...+.++.++++.+|.+..++.....+....+. +++.++...+++..++.+.
T Consensus 122 --~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 122 --LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD--WQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred --CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch--HHHHHHHHHHHHHhcCCcc
Confidence 25666677777777777777666666555554443 5666666777776666553
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.84 E-value=0.029 Score=54.52 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHhC--CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 112 AIEVMIHSKALLLLS--CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~n--pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
.+++.+..+.+.... +....+|..+..+....+ ...+++.+...+|..+|++..++..-.|++...+.
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G---~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~------- 195 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG---DPDKALRDYRKALELDPDDPDARNALAWLLIDMGD------- 195 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-------
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------
Confidence 345555555555444 678899999999988874 77999999999999999999999998888765443
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
..+..+++....+..|.|-..|..-.++...++. .++.+.+..+.+..+|.|.....+...++..
T Consensus 196 -~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 196 -YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred -hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccccccccccccccccccccccccc
Confidence 2334556777777778888899999999988886 6899999999999999999988887777654
No 46
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.82 E-value=0.15 Score=56.63 Aligned_cols=133 Identities=8% Similarity=-0.133 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
.+.|.-......--|.+..+-.-=.++.++.+ .+++.+.+...++...|++..++.++.-+|.+... ++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g---~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------~e 137 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAH---RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------IE 137 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------HH
Confidence 33444444444556666666655567777764 78999999999999999999999999999998876 79
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
+.+..+++++..+|.|..+=+++.-++..++. .++.++.+++.+..||.+-.+|--+..++...
T Consensus 138 eA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 138 AGRAEIELYFSGGSSSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987 78999999999999999999999999998764
No 47
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.78 E-value=0.011 Score=44.69 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
...+|..++.++... ..+.+++..++.++..+|+++.+|..|.-+...+++ .+.+.++.+.++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~---~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-------~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ---GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-------DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-------HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-------cHHHHHHHHHHHHHcCc
Confidence 467888898888877 479999999999999999999999999999888762 16788999999999988
No 48
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.78 E-value=0.48 Score=44.46 Aligned_cols=143 Identities=9% Similarity=-0.080 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh---hhhHHHHHHHHHhhccc
Q 045108 112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ---AWSHRRWVINMISRNCS 185 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~---~W~hRrwll~~l~~~~~ 185 (425)
.++++.....++..+|++. .+|.....++... ..+++++.....++..+|+++. +|..+..+.........
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS---GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 3678889999999999876 5778888888777 4789999999999999999887 57777776655411000
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCchhhhhH---HHHHHHhh------------chhhHHHHHHHHHHHHhhcCCC---hhH
Q 045108 186 TLQWIIERESELVEKIAERSKMNYRAWNH---RCWLVSFM------------TREQVLNELKQSRNWSGLHVAD---NSC 247 (425)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~h---R~wll~~~------------~~~~~~~EL~~~~~~i~~d~~N---~Sa 247 (425)
.-.......+..+.++++.+|.+-.+|.= ..++.... ....+...+....+.+...|.+ -.+
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a 205 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA 205 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence 00134678899999999999999776522 22222111 1123677889999999987764 357
Q ss_pred HHHHHHHHHH
Q 045108 248 FHYHRRLMIW 257 (425)
Q Consensus 248 W~yR~~ll~~ 257 (425)
|..+..+...
T Consensus 206 ~~~l~~~~~~ 215 (235)
T TIGR03302 206 LARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.74 E-value=0.19 Score=50.64 Aligned_cols=134 Identities=15% Similarity=0.030 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
.++|..+-.++..||++|.|..-|.-+..+++ .-.-.+.-++.+|...|+++.+=..|.-++.+.+. ++
T Consensus 55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmG---ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge--------le 123 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMG---KSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE--------LE 123 (504)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhc---CCccchhhHHHHHhcCccHHHHHHHhchhhhhccc--------HH
Confidence 45788889999999999999988888888875 44678888899999999999999999999887765 45
Q ss_pred HHHHHHHHHHHhcCCchh-------------hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 193 RESELVEKIAERSKMNYR-------------AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~-------------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
..-.-...++..+|.|-. -|..|..+.+..+.-+....+++++..++.-|=|-|-..+|.-.+-.
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 555556667777775543 35555555555544456788888999999888888888888766543
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.71 E-value=0.044 Score=53.26 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=99.0
Q ss_pred ccHHHHHHHHHHHHhh--CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 147 PILMDELRLSAVVLSH--SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~--~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
..+.+...+++.+... .|.++.+|.++..+..+.+. ..+.+.++.++++.+|.|-.++..-.|++-..+.
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--------PDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 3566667777776543 47899999999998888765 5889999999999999999999999999876664
Q ss_pred hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 225 EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 225 ~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
..+..+.+..+....|+|...|.....+...+ + ..++.+.+..+++..+|.|.....+
T Consensus 196 --~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g-------------------~~~~Al~~~~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 196 --YDEAREALKRLLKAAPDDPDLWDALAAAYLQL-G-------------------RYEEALEYLEKALKLNPDDPLWLLA 253 (280)
T ss_dssp --HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T--------------------HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred --hHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-c-------------------ccccccccccccccccccccccccc
Confidence 44556677777777788888898888777765 2 2578899999999999999988877
Q ss_pred HHHHHH
Q 045108 305 RRFLSL 310 (425)
Q Consensus 305 rr~Ll~ 310 (425)
.-.++.
T Consensus 254 ~a~~l~ 259 (280)
T PF13429_consen 254 YADALE 259 (280)
T ss_dssp HHHHHT
T ss_pred cccccc
Confidence 655554
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.71 E-value=0.072 Score=58.99 Aligned_cols=118 Identities=10% Similarity=0.038 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++......+|..+|.++.||.+=+.+-+..+ +.++.+.+--.+-..+|+++..|.+-.-+..+++. +
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG---d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~--------i 223 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG---DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN--------I 223 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc---cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--------H
Confidence 478999999999999999999999999999884 88999999999999999999999887777666543 7
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV 242 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~ 242 (425)
..+.-+..+++..+|.|+.-=.-|.-+.++++. ...++.-..+++..+|
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHHHHHhhCC
Confidence 889999999999999997655556777777775 5566777777777766
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.62 E-value=0.14 Score=60.09 Aligned_cols=135 Identities=10% Similarity=0.039 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh--hhhH-----HHHHH
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR--AWNH-----RCWLV 219 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~--AW~h-----R~wll 219 (425)
..+++++..+..++..+|++..+|.....++.+.+. +++.+..+.++++.+|.+.. .|.. +.|+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~--------~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD--------RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 478999999999999999999999988888777654 68899999999999998764 3421 23333
Q ss_pred Hhh-----chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhh
Q 045108 220 SFM-----TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKR 294 (425)
Q Consensus 220 ~~~-----~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~ 294 (425)
... ....+.+.+..+.+.+..+|.|..++..+..+.... + .+++.+++..+++..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~-g-------------------~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMAR-K-------------------DYAAAERYYQQALRM 414 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHh
Confidence 221 122477889999999999999998888777666542 1 267778888999999
Q ss_pred cCCCccHHHHHHHHH
Q 045108 295 YVGREALWLHRRFLS 309 (425)
Q Consensus 295 ~p~neSaW~yrr~Ll 309 (425)
+|+|..+|.....+.
T Consensus 415 ~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 415 DPGNTNAVRGLANLY 429 (1157)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999987655443
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.60 E-value=0.076 Score=59.56 Aligned_cols=131 Identities=9% Similarity=-0.025 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++....++..+|....++.....++...+ .+.+++.++..++..+|.+..+|....-++...+. +
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~--------~ 99 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK---QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ--------Y 99 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 456667777777777777777777777766663 67778888888888888887777544443333322 5
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
.+.+..+.++++.+|.|.. |.-...++...+. ....+..+++++..+|.|..++.....++.
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6777788888888888877 7777777666554 567788888888888888777776655543
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.59 E-value=0.16 Score=57.06 Aligned_cols=164 Identities=8% Similarity=-0.066 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHhCCccHH----HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhh---------------H
Q 045108 112 AIEVMIHSKALLLLSCDFAT----AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWS---------------H 172 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~T----aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~---------------h 172 (425)
.++++.....++..+|.+.. +.......+... ..+++++..+..++..+|+...++. .
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~---g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLES---ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc---ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 56677778888877776632 222222222222 4688889999999988887655442 1
Q ss_pred HHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108 173 RRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252 (425)
Q Consensus 173 Rrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~ 252 (425)
+..++... ..+++.++++.+++...|.|..+|..+.-+....+. ..+.++.+++.+..+|.|...+..+.
T Consensus 365 ~a~~l~~~--------g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 365 LSQVAKYS--------NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 11111111 236888999999999999999999999999887776 68889999999999999999888887
Q ss_pred HHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108 253 RLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 253 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L 308 (425)
.+.... + -+++.....+++|..+|.|..+=.+.|-.
T Consensus 435 ~~al~~-~-------------------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 435 WTALDL-Q-------------------EWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHh-C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 765543 1 26777888899999999999887776654
No 55
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.018 Score=56.66 Aligned_cols=104 Identities=14% Similarity=0.015 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
...+++++.++.+|.++|.+....-.|...+.+++ .+..+++-|..+|.++|.+..+|.--..+...+++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg---~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk------- 164 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG---EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK------- 164 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc---chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc-------
Confidence 35678999999999999999999999999999885 68999999999999999999999877766666554
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
+.+.++...++|+.+|.|-..|++-.|+-..+..
T Consensus 165 -~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 165 -YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred -HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 5788888999999999999999998888776653
No 56
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.36 E-value=0.033 Score=42.00 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=58.3
Q ss_pred chhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108 166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV 242 (425)
Q Consensus 166 sy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~ 242 (425)
+..+|..+.-++...++ +.+.+..+.++++.+|.+..+|..++-+...++. .+.+.++.+++.++.||
T Consensus 2 ~a~~~~~~g~~~~~~~~--------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD--------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH--------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHcCc
Confidence 45678888777776654 7899999999999999999999999999988872 37888999999999987
No 57
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.34 E-value=0.13 Score=38.58 Aligned_cols=97 Identities=13% Similarity=0.009 Sum_probs=67.4
Q ss_pred HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108 133 WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (425)
Q Consensus 133 Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (425)
|..+..+.... ..+.+.+..+..++...|++..+|..+..++..... +...+..+..++...|.+..+|
T Consensus 3 ~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 3 LLNLGNLYYKL---GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK--------YEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHHH---hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCcchhHH
Confidence 34444444443 367888888888888888888888887777766543 5777788888888888888777
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108 213 NHRCWLVSFMTREQVLNELKQSRNWSGLHV 242 (425)
Q Consensus 213 ~hR~wll~~~~~~~~~~EL~~~~~~i~~d~ 242 (425)
.....+....+. +......+.+.+..+|
T Consensus 72 ~~~~~~~~~~~~--~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYYKLGK--YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHHHHccCC
Confidence 776666655443 4555666666666554
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.15 E-value=0.9 Score=42.61 Aligned_cols=167 Identities=7% Similarity=-0.043 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108 129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (425)
Q Consensus 129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (425)
...++..+...+... ..+.+++..+..++..+|.++ .+|.+..-++...++ ++..+....++++.+
T Consensus 32 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALDS---GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------YAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHC
Confidence 444555555555554 368999999999999999987 466666666555443 789999999999999
Q ss_pred CCchh---hhhHHHHHHHhhc------hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhh
Q 045108 206 KMNYR---AWNHRCWLVSFMT------REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVE 276 (425)
Q Consensus 206 pkNY~---AW~hR~wll~~~~------~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~ 276 (425)
|.+.. +|..++.+..... .......+...++.+..+|.+-.++.-...+... ...... .....+..-.
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~-~~~~~~--~~~~~a~~~~ 177 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL-RNRLAG--KELYVARFYL 177 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH-HHHHHH--HHHHHHHHHH
Confidence 99887 6888888775541 1246778999999999999998887444322110 000000 0000000000
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCc---cHHHHHHHHH
Q 045108 277 TYQVWKEELDWNESLIKRYVGRE---ALWLHRRFLS 309 (425)
Q Consensus 277 ~~~~~~~EL~~~~~~I~~~p~ne---SaW~yrr~Ll 309 (425)
...-+.+.+.....++..+|++. .+|..+..+.
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAY 213 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH
Confidence 01125677888899999988753 4666544333
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.11 E-value=0.35 Score=54.63 Aligned_cols=118 Identities=6% Similarity=-0.157 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhCCccHHHHH-HHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH--HHHHHhhccchhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWN-SRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW--VINMISRNCSTLQW 189 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn-~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw--ll~~l~~~~~~~~~ 189 (425)
..+++....+|..+|++..+.+ +-..... . ....+++..+++++ .|.+......+.. +....+
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~---G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g-------- 116 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAGW-A---GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK-------- 116 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHHH-c---CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC--------
Confidence 4677777777777777743222 1111111 1 24456666666666 2222222222211 111111
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS 246 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S 246 (425)
.+.+.++++.++++.+|.|-.++..- .+........++.++.+.++...+|.+..
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gL--a~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGM--IMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 24566666666666666666665422 22111112345556666666666666433
No 60
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.50 E-value=0.22 Score=37.22 Aligned_cols=85 Identities=18% Similarity=0.061 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..++... ..+++.+..+..++..+|++..+|.....+....+. +
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 84 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKL---GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK--------Y 84 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh--------H
Confidence 36688888999999999999999988888776 367899999999999999999888877777666544 4
Q ss_pred HHHHHHHHHHHHhcCC
Q 045108 192 ERESELVEKIAERSKM 207 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pk 207 (425)
......+..+++.+|.
T Consensus 85 ~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 85 EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHccCCC
Confidence 6667777777777763
No 61
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.35 E-value=0.31 Score=43.96 Aligned_cols=115 Identities=8% Similarity=-0.043 Sum_probs=82.6
Q ss_pred HHHHHhCCccHHHH--HHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHH
Q 045108 120 KALLLLSCDFATAW--NSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERE 194 (425)
Q Consensus 120 ~~lLl~npe~~TaW--n~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~E 194 (425)
..++..+++...++ ..+...+... ..+++++..+..++..+|+.. .+|.....+..+++. +++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A 91 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQAD---GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------HDKA 91 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------HHHH
Confidence 44445555555544 4455555555 478999999999999887653 566666666666554 6888
Q ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhchh------------hHHHHHHHHHHHHhhcCCCh
Q 045108 195 SELVEKIAERSKMNYRAWNHRCWLVSFMTRE------------QVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------------~~~~EL~~~~~~i~~d~~N~ 245 (425)
+..+.++++.+|.+..++...+++....+.. .+...++...+.+..+|.|+
T Consensus 92 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 92 LEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 8999999999999999999999988776531 24556777777777888773
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.23 E-value=1.6 Score=43.48 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhH
Q 045108 148 ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (425)
Q Consensus 148 ~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (425)
++.+.+.++..++..+|++..+|.. ......++.... ........+......+|...++.....+++...+. +
T Consensus 58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~--~ 130 (355)
T cd05804 58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG----MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ--Y 130 (355)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc----CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC--H
Confidence 4556666666666666666655543 222211111000 01111112222233444444444444444444333 4
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108 228 LNELKQSRNWSGLHVADNSCFHYHRRLM 255 (425)
Q Consensus 228 ~~EL~~~~~~i~~d~~N~SaW~yR~~ll 255 (425)
.+....+.+.+..+|.|..+++....++
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4555555555555555555555544443
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.17 E-value=4.2 Score=46.19 Aligned_cols=131 Identities=15% Similarity=0.038 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHH--HHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSR--KLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~R--r~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
.++++...++++ +|++....-.+ ..+.... +.+.+++.++..++..+|+++.++..- ++..... .
T Consensus 84 ~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~---gdyd~Aiely~kaL~~dP~n~~~l~gL--a~~y~~~------~ 150 (822)
T PRK14574 84 DQEVIDVYERYQ--SSMNISSRGLASAARAYRNE---KRWDQALALWQSSLKKDPTNPDLISGM--IMTQADA------G 150 (822)
T ss_pred cHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHhhc------C
Confidence 467888888888 66665555555 3355554 478999999999999999999999633 2222211 1
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
-.++.++.+.++...+|.|... .-+..+...+.. ..++++..++++..+|.|.....-+...+.+.
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~--~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR--NYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 2578999999999999998776 666666654333 44599999999999999999987776666553
No 64
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.12 E-value=0.11 Score=38.69 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (425)
+.+++.+..+..++..+|+++.+|.....++.+.+. +.+.+....++++.+|.|
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR--------YDEALAYYERALELDPDN 64 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTT-
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCC
Confidence 367888888888888888888888888888877655 577778888888888865
No 65
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.00 E-value=3 Score=42.30 Aligned_cols=164 Identities=12% Similarity=0.028 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh-------------hhhHHHHHHHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ-------------AWSHRRWVINM 179 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~-------------~W~hRrwll~~ 179 (425)
..+|.-...+|.+-|+++.|=..|+.++.+.+ .++++..-++.+|..+|.+-+ -|+-|..+.+.
T Consensus 89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~G---ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQG---ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred ccchhhHHHHHhcCccHHHHHHHhchhhhhcc---cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44677778899999999999999999988774 789999999999999995543 34444433333
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL 259 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~ 259 (425)
... ......++++..+++..|=.-....+|.-++-.-+. ....+..+...-++-..|.-+..--..|+-.+
T Consensus 166 ~~~------GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e--~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v- 236 (504)
T KOG0624|consen 166 SGS------GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE--PKKAIHDLKQASKLSQDNTEGHYKISQLLYTV- 236 (504)
T ss_pred hcC------CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc--HHHHHHHHHHHHhccccchHHHHHHHHHHHhh-
Confidence 322 236788999999999999776666677666544333 34555555555555555555544434443332
Q ss_pred ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
+ -.+.-|.-+.+.+..+|.|-+-.-+...
T Consensus 237 g-------------------d~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 237 G-------------------DAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred h-------------------hHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 1 0233455556667778888877765543
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.95 E-value=0.57 Score=44.80 Aligned_cols=123 Identities=8% Similarity=-0.128 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
...+.+..+++|..+|++|-+|..|..+.+..+ ..+.+-+-..++|+.+|++-.+-|.=.|.|-..+. +
T Consensus 51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~--------~ 119 (250)
T COG3063 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR--------P 119 (250)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--------h
Confidence 466778899999999999999999999999885 56777788899999999999999988888765554 5
Q ss_pred HHHHHHHHHHHH--hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 192 ERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 192 ~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
++.+...++++. .+|--+-.|..-+||--+++. ....-++.++.+..||.+-.+
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC--chhHHHHHHHHHHhCcCCChH
Confidence 777887777776 456666789999999877775 456777888999999887665
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.93 E-value=0.44 Score=38.94 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccc
Q 045108 112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCS 185 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~ 185 (425)
.+++++....++..+|++ .+++..+..++... ..+.+++..+..++..+|.+ ..+|....+++.++..
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--- 91 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ---GKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD--- 91 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC---
Confidence 477889999999999987 56888888888877 47899999999999999886 4677777777776554
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCchh
Q 045108 186 TLQWIIERESELVEKIAERSKMNYR 210 (425)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~ 210 (425)
..+.+.++..+++.+|.+-.
T Consensus 92 -----~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 92 -----KEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred -----hHHHHHHHHHHHHHCcCChh
Confidence 57888999999999998743
No 68
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.84 E-value=0.12 Score=39.14 Aligned_cols=57 Identities=19% Similarity=0.076 Sum_probs=51.5
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA 169 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~ 169 (425)
...+++++..+.++.++|++..+|..|..++...+ .+.+++..++.++...|+..++
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHH
Confidence 34578999999999999999999999999999884 8899999999999999988765
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.80 E-value=2.6 Score=41.90 Aligned_cols=123 Identities=10% Similarity=-0.017 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
..+++++....++..+|++..+++. ........ ..................+|....+.....+++...+.
T Consensus 58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~------- 129 (355)
T cd05804 58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ------- 129 (355)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC-------
Confidence 3568899999999999999998875 22222111 01122233333333334555555555555566655443
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
+.+....+.++++.+|.+-+++....-++...+. +++.+..+.+++...+.+
T Consensus 130 -~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 130 -YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFMESWRDTWDCS 181 (355)
T ss_pred -HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHhhhhccCCC
Confidence 6888999999999999998888777777766665 778899999999987754
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.31 Score=51.42 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..+.+++.++.+|..||++.++...|..+..++. .+...|.-+..++..+|.+...|....-++..+..
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-------- 441 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG---EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-------- 441 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--------
Confidence 3466778888899999999999999999999884 78999999999999999999999999888887765
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhH
Q 045108 191 IERESELVEKIAERSKMNYRAWNH 214 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~h 214 (425)
+.+.++.+..+++.||.|-.+=.+
T Consensus 442 ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHH
Confidence 789999999999999987665443
No 71
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=1 Score=43.72 Aligned_cols=136 Identities=11% Similarity=-0.036 Sum_probs=101.6
Q ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-ccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108 109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVS-NKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~-~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~ 187 (425)
....+++++.++.+|.-||-|..+- .||..+. +.+ .-.+.++-+...|..++....+|++-..+......
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~-KRKlAilka~G---K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~----- 169 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIR-KRKLAILKAQG---KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD----- 169 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHH-HHHHHHHHHcC---CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH-----
Confidence 3567889999999999998876554 4665444 443 33488999999999999999999999888776654
Q ss_pred HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc-hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT-REQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
+.+..-+.+.++-..|-|+-...--.=++-..+ .+.++....+..+.++.++.|..+|.-....-.
T Consensus 170 ---f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 170 ---FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred ---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 678888889999999999865433233332232 345677789999999999999999876543333
No 72
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=5.9 Score=41.62 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=105.0
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
..-+.+..++..+|+.||+...+|.--.-=.-.+.+ -...++...++++.+|+.|.||.--+....-|.-
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-- 413 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-- 413 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--
Confidence 446788999999999999999999644332223332 2677888999999999999999988887776654
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr 306 (425)
-.-.|-+..+.+..-|.|.--|.-..-...++ ...++.+.+.+.+|...--+-++-.+.-
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl--------------------~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKL--------------------NRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 35678999999999999999998877777664 1356778888888877766778877776
Q ss_pred HHHHHH
Q 045108 307 FLSLYL 312 (425)
Q Consensus 307 ~Ll~~~ 312 (425)
.|...+
T Consensus 474 kLye~l 479 (559)
T KOG1155|consen 474 KLYEEL 479 (559)
T ss_pred HHHHHH
Confidence 666654
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.60 E-value=0.12 Score=38.51 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE 167 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy 167 (425)
.++++.....++..+|++..+|...+.++...+ .+.+++.....++..+|.++
T Consensus 13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG---RYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCCC
Confidence 478999999999999999999999999999874 78999999999999999875
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.59 E-value=0.52 Score=50.85 Aligned_cols=100 Identities=12% Similarity=0.009 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
...|++...+|...|+|-...-..+..|..++ .-+++...+...+..++||+-.||--.-+...- ..+.
T Consensus 24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg---~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--------K~Y~ 92 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLG---KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--------KKYD 92 (700)
T ss_pred HhHHHHHHHHHHhCCccchhHHhccchhhccc---chHHHHHHHHHHhccCcccchhHHHHHHHHhhh--------hhHH
Confidence 45789999999999999999999998888875 668899999999999999999998666544332 2478
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (425)
+.+.+...|+...|.|-..|.--..+-.+|.
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999987766666654
No 75
>PRK11906 transcriptional regulator; Provisional
Probab=94.57 E-value=0.83 Score=47.83 Aligned_cols=129 Identities=9% Similarity=-0.081 Sum_probs=96.2
Q ss_pred ccchHHHHHHHHHHH---HhCCccHHHHHHHHHHHHcc-----C-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHH
Q 045108 109 DTVAIEVMIHSKALL---LLSCDFATAWNSRKLIVSNK-----Q-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINM 179 (425)
Q Consensus 109 ~~~~~~~L~~t~~lL---l~npe~~TaWn~Rr~lL~~~-----~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~ 179 (425)
.+....++.+...++ .++|++..++-.+..+-... . ......+.+++...++..+|.++.+=.....++..
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 355677888899999 99999988766555433221 1 12346777888899999999998875555544443
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
... +...+...++++..+|..-.+|.++.|+...-+. .++.++.+++.++++|.---+
T Consensus 351 ~~~--------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 351 SGQ--------AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcc--------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCchhhHH
Confidence 332 5677888999999999999999999999887665 678899999999999865433
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.53 E-value=0.89 Score=50.68 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=84.1
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
+.++++..++..++..+|+++.+|..-.-|.++.++ .++-+.+-..|+-.+|+++.-|.+-.=+...++.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd--------~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~-- 222 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD--------IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN-- 222 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHccc--------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc--
Confidence 478999999999999999999999999999998775 5788888899999999999999987666666654
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
+..+.-+..+.|..+|.|.-----|..|+.+
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 7899999999999999995433334444444
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.50 E-value=0.65 Score=51.01 Aligned_cols=122 Identities=11% Similarity=0.019 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++.-+...+=.+.|....+|+.|++++... ....++...+..+|..+|....+=.--.-++.+.+.. -+
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~---~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~------~l 736 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVK---GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP------RL 736 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHH---HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc------ch
Confidence 35555566666677777777888887777665 3678889999999999999998888888888777642 13
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
...-.+.+.+++.||.|-.||.+-+-++...+. .....+.....+..+.+|
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--SKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--hHHHHHHHHHHHhhccCC
Confidence 444458888999999999999999999988876 556677777777666654
No 78
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.43 E-value=0.94 Score=40.84 Aligned_cols=99 Identities=12% Similarity=-0.025 Sum_probs=84.3
Q ss_pred ceEeecccccc----h-hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHH
Q 045108 63 SFWIRDHKLGI----S-TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRK 137 (425)
Q Consensus 63 p~~~~~~~lgi----~-~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr 137 (425)
.|+..|.+|++ + ...+-.+|..|...+.. ..-+++...+..+..++|.+...|.--+
T Consensus 15 ~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~------------------G~l~~A~~~f~~L~~~Dp~~~~y~~gLG 76 (157)
T PRK15363 15 RFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEV------------------KEFAGAARLFQLLTIYDAWSFDYWFRLG 76 (157)
T ss_pred HHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 47788888765 4 56677899999655322 2347899999999999999999999999
Q ss_pred HHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh
Q 045108 138 LIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR 182 (425)
Q Consensus 138 ~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~ 182 (425)
.+.+..+ .+.+++.....++..+|++|..-.|-..++..+++
T Consensus 77 ~~~Q~~g---~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 77 ECCQAQK---HWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHh---hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 9999884 89999999999999999999999999999998876
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.22 E-value=1.6 Score=35.57 Aligned_cols=90 Identities=8% Similarity=-0.074 Sum_probs=69.8
Q ss_pred ccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHH
Q 045108 147 PILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVS 220 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~ 220 (425)
..+.+++..+..++..+|++ .+++.....++...+. +...+..+..++..+|.+ -.+|....++..
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 47899999999999999987 3555555555555443 688999999999999986 356777778877
Q ss_pred hhchhhHHHHHHHHHHHHhhcCCChh
Q 045108 221 FMTREQVLNELKQSRNWSGLHVADNS 246 (425)
Q Consensus 221 ~~~~~~~~~EL~~~~~~i~~d~~N~S 246 (425)
.++. ....+..+.+.+..+|.+--
T Consensus 88 ~~~~--~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 88 ELGD--KEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HhCC--hHHHHHHHHHHHHHCcCChh
Confidence 7665 67888999999999887643
No 80
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.12 E-value=1.2 Score=40.10 Aligned_cols=128 Identities=10% Similarity=-0.033 Sum_probs=85.4
Q ss_pred HHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhchhhHHHHHHH
Q 045108 157 AVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVSFMTREQVLNELKQ 233 (425)
Q Consensus 157 ~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~~~~~~~~~~EL~~ 233 (425)
..++..+++...++.+.......... ..+++.+.++.++++..|.. ..+|...+.+...++. ++..+..
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~ 94 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQAD------GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--HDKALEY 94 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--HHHHHHH
Confidence 44455555555555444433332221 12688899999999887653 4577777777777665 7888999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCC
Q 045108 234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGR 298 (425)
Q Consensus 234 ~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~n 298 (425)
+.+.+..+|.+..++..+..+...+... .. ..+........+.+.+++.++.+..+|.|
T Consensus 95 ~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~-----a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 95 YHQALELNPKQPSALNNIAVIYHKRGEK-AE-----EAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCh-Hh-----HhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999988887776553110 00 00112334456778888999999999998
No 81
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.08 E-value=2.5 Score=44.41 Aligned_cols=119 Identities=8% Similarity=-0.089 Sum_probs=99.5
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
|.-..+|.-+..--... ..+.+.+..+..++...|+|+..|..+..+.....+ ..+..+...+++..+|
T Consensus 303 ~~~~aa~YG~A~~~~~~---~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------~~~A~e~~~kal~l~P 371 (484)
T COG4783 303 RGGLAAQYGRALQTYLA---GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------AKEAIERLKKALALDP 371 (484)
T ss_pred ccchHHHHHHHHHHHHh---cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcCC
Confidence 66667776665433333 467899999999999999999999999999887765 5788999999999999
Q ss_pred CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
-++..|--..-.+-..+.+ .+.+...+..+..+|.|--+|.|.......+
T Consensus 372 ~~~~l~~~~a~all~~g~~--~eai~~L~~~~~~~p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKP--QEAIRILNRYLFNDPEDPNGWDLLAQAYAEL 421 (484)
T ss_pred CccHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 9999998888888777764 5889999999999999999999988776653
No 82
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.83 E-value=0.27 Score=51.26 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=65.1
Q ss_pred hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh---hhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108 125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA---WSHRRWVINMISRNCSTLQWIIERESELVEKI 201 (425)
Q Consensus 125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~---W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~ 201 (425)
.+|+++.+|+.+...+... ..+++++..++.+|..+|.+..+ |+++..++.+++. +++.++.+.++
T Consensus 70 ~dP~~a~a~~NLG~AL~~l---GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--------~dEAla~LrrA 138 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK---GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--------GKKAADCLRTA 138 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence 6999999999999999888 48999999999999999999955 9999999998876 68889999999
Q ss_pred HHhcCCch
Q 045108 202 AERSKMNY 209 (425)
Q Consensus 202 l~~~pkNY 209 (425)
++.++..|
T Consensus 139 Lelsn~~f 146 (453)
T PLN03098 139 LRDYNLKF 146 (453)
T ss_pred HHhcchhH
Confidence 99854444
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.70 E-value=6.3 Score=42.26 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN 269 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~ 269 (425)
-+++...+.+.+|..+|.||..|+--+-.+..-. ...+.++.+.+.+.+-|.=.-+|.....-.-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl----------- 511 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQLQPGYVRVRYNLGISCMNL----------- 511 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-----------
Confidence 3555666666777777777777765554443322 245666666666666666555555544332221
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhhcCC----------CccHHHHHHHHHH
Q 045108 270 SSGYFVETYQVWKEELDWNESLIKRYVG----------REALWLHRRFLSL 310 (425)
Q Consensus 270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~----------neSaW~yrr~Ll~ 310 (425)
..+++.+.+.-.+|.+.+. ++.+|-++|..+.
T Consensus 512 ---------G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 512 ---------GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred ---------hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 2466777777777766554 3469999995443
No 84
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=4.9 Score=42.20 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+.++.....+|.+||....||---+.=...+ ..-..++.....++..||..|-+|.--.....-+. ..
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm---KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~--------Mh 414 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM---KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK--------MH 414 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh---cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc--------ch
Confidence 46788899999999999999998777544344 35578899999999999999999988766655443 24
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
.-.|-+..++++.-|..-..|.--+-+...++. .++.+...++.+...-.|-+|..+...+-.++
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 678889999999999888888877777777765 68889999999998888889988888777765
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.62 E-value=0.53 Score=50.09 Aligned_cols=87 Identities=8% Similarity=-0.038 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++++.+.+|..+|.+|+.||--+..|-+.. ...+++.-...+|...|-..-+|..-...--.++. +
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~---~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~--------y 514 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN---RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA--------Y 514 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc---ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh--------H
Confidence 477899999999999999999999999888773 56899999999999999999999887765555543 7
Q ss_pred HHHHHHHHHHHHhcCCch
Q 045108 192 ERESELVEKIAERSKMNY 209 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY 209 (425)
.+..+.+-.+|...++++
T Consensus 515 kEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 888888888888888844
No 86
>PRK11906 transcriptional regulator; Provisional
Probab=93.57 E-value=3.4 Score=43.35 Aligned_cols=154 Identities=7% Similarity=-0.053 Sum_probs=114.8
Q ss_pred HhCCccH---HHH----HHHHHHHHccCCcccHHHHHHHHHHHH---hhCCCchhhhhHHHHHHHHHhh-ccchhHHhHH
Q 045108 124 LLSCDFA---TAW----NSRKLIVSNKQLLPILMDELRLSAVVL---SHSPKSEQAWSHRRWVINMISR-NCSTLQWIIE 192 (425)
Q Consensus 124 l~npe~~---TaW----n~Rr~lL~~~~~~~~l~~EL~~~~~lL---~~~PKsy~~W~hRrwll~~l~~-~~~~~~~~~~ 192 (425)
..-|++. .+| ..|++-............++.++..++ ..+|.+..++..+-|+-....- ...+......
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3347788 888 334432222111356788999999999 8999999999999888765522 1122445578
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC
Q 045108 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG 272 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~ 272 (425)
+.+++..++.+.+|.|-.|=...+.++-..+. ....+...++.+..+|+.-.+|.|+.++..-. +
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~--~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~-G------------ 386 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQ--AKVSHILFEQAKIHSTDIASLYYYRALVHFHN-E------------ 386 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc--hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc-C------------
Confidence 88899999999999999887777776665554 67788999999999999999999999887542 2
Q ss_pred chhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108 273 YFVETYQVWKEELDWNESLIKRYVGRE 299 (425)
Q Consensus 273 ~~~~~~~~~~~EL~~~~~~I~~~p~ne 299 (425)
-.++.++.+.+.++++|..-
T Consensus 387 -------~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 387 -------KIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred -------CHHHHHHHHHHHhccCchhh
Confidence 15677888889999998743
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.47 E-value=0.74 Score=49.71 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=88.1
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
..+..-|.++..+|+++|+....-.-..-.|..++. -++....|...+..|++++-+|+--+-+.+.- ..
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~ 90 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--KK 90 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------hHHHHHHHHHHhccCcccchhHHHHHHHHhhh--hh
Confidence 468999999999999999999998888888877766 37888999999999999999998766665543 34
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
+.+.+.....++..++.|-+-|.-...|-..|
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQM 122 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 88999999999999999999999988776665
No 88
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.44 E-value=0.45 Score=35.99 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF 248 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW 248 (425)
.++..+++++.+++.+|.+..+|..++.+...++. +...++.++++++.+|.+..+=
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGR--YEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc--HHHHHHHHHHHHHHCCCcHHHH
Confidence 47899999999999999999999999999998886 7899999999999999776553
No 89
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.44 E-value=4.3 Score=43.61 Aligned_cols=154 Identities=8% Similarity=-0.083 Sum_probs=96.9
Q ss_pred HhCCccHHHHHH--HHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108 124 LLSCDFATAWNS--RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI 201 (425)
Q Consensus 124 l~npe~~TaWn~--Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~ 201 (425)
..-|.+.+||.. |.+-.............+.+++.++..+|.+..+|..+-++..............+..-.+...++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345677788864 443222221234578999999999999999999999887655433222211112233444444554
Q ss_pred HHh--cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhH
Q 045108 202 AER--SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQ 279 (425)
Q Consensus 202 l~~--~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 279 (425)
+.. +|..- ..|...-+..+....+++.....++.+.++|+ .-+|.++..+.... +
T Consensus 411 ~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~-G------------------- 467 (517)
T PRK10153 411 VALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELK-G------------------- 467 (517)
T ss_pred hhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc-C-------------------
Confidence 443 45443 34444444433334588999999999999984 45666665554431 1
Q ss_pred HHHHHHHHHHHHHhhcCCCcc
Q 045108 280 VWKEELDWNESLIKRYVGREA 300 (425)
Q Consensus 280 ~~~~EL~~~~~~I~~~p~neS 300 (425)
..++.++...+++.++|+++.
T Consensus 468 ~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 DNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHhcCCCCch
Confidence 256778899999999999985
No 90
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.64 E-value=1.2 Score=41.98 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=73.3
Q ss_pred ccHHHHHHHHHHHHhhCCCchh-----hhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQ-----AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF 221 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~ 221 (425)
.+++++..-...+|...|..++ ++..|.-++-++. -++..+.-|.++++.+|.+-.|---|..+..+
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~--------k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR--------KWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh--------hHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4688889999999999998886 2333333333333 37889999999999999999999988999988
Q ss_pred hchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 222 MTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 222 ~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
+.. +++.|+.+++.++.||++.-+
T Consensus 181 ~ek--~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 181 MEK--YEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhh--HHHHHHHHHHHHHhCcchHHH
Confidence 854 789999999999999998743
No 91
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.62 E-value=3 Score=37.19 Aligned_cols=105 Identities=8% Similarity=-0.034 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
..+|+....+.... ..+++++..+..++...|+++ .+|.....+....+. .++.+.++.+++..+|
T Consensus 35 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 35 AFTYYRDGMSAQSE---GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------HTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCc
Confidence 45555556656555 368888999999988877644 366666666666544 5788889999999999
Q ss_pred CchhhhhHHHHHHHhhchh------------hHHHHHHHHHHHHhhcCCCh
Q 045108 207 MNYRAWNHRCWLVSFMTRE------------QVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~------------~~~~EL~~~~~~i~~d~~N~ 245 (425)
.+-.+|.....+....+.. .+.+.+....+.+..+|.++
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9998888888888744421 12233455555555555544
No 92
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.35 E-value=1.8 Score=38.62 Aligned_cols=97 Identities=13% Similarity=0.032 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc----
Q 045108 111 VAIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN---- 183 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~---- 183 (425)
..++++.....++.+.|++. ++|.....+.... ...++++..+..++..+|.....|.....+...+...
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~---g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~ 126 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN---GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ 126 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence 35788999999998877743 5788888887777 4789999999999999999999999998888755421
Q ss_pred c--chhHHhHHHHHHHHHHHHHhcCCchh
Q 045108 184 C--STLQWIIERESELVEKIAERSKMNYR 210 (425)
Q Consensus 184 ~--~~~~~~~~~EL~~~~~~l~~~pkNY~ 210 (425)
+ ......+.+.+.+..++++.+|.|+-
T Consensus 127 g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 127 GDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 1 11223466777888899999998773
No 93
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.26 E-value=7.7 Score=40.05 Aligned_cols=169 Identities=7% Similarity=-0.182 Sum_probs=107.2
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhC---CCch-----hhhhHHH--------
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHS---PKSE-----QAWSHRR-------- 174 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~---PKsy-----~~W~hRr-------- 174 (425)
..+.++...+.++..+|+|..+...-..+.... .++++.+..+..++... |..+ .+|..+-
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~---~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS---GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356788899999999999999988877777665 36777777777777543 3333 2232211
Q ss_pred -HHHHHHhhccc-----h------------hHHhHHHHHHHHHHHHHhcCCchhhh--hHHHHHHHhhchhhHHHHHHHH
Q 045108 175 -WVINMISRNCS-----T------------LQWIIERESELVEKIAERSKMNYRAW--NHRCWLVSFMTREQVLNELKQS 234 (425)
Q Consensus 175 -wll~~l~~~~~-----~------------~~~~~~~EL~~~~~~l~~~pkNY~AW--~hR~wll~~~~~~~~~~EL~~~ 234 (425)
-.+.......+ + .....+..++.+.++++.+|.|.... ..+.... +...+...-++.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh--cCCCChHHHHHHH
Confidence 01111111010 0 01335788899999999999886542 2222221 2222345678899
Q ss_pred HHHHhhcCCCh--hHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHH--HHHhhcCCCccHHHH
Q 045108 235 RNWSGLHVADN--SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNE--SLIKRYVGREALWLH 304 (425)
Q Consensus 235 ~~~i~~d~~N~--SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~--~~I~~~p~neSaW~y 304 (425)
++|++.+|.|. .......++..+. + .+.+..++.+ ..+..+|+++...+.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~-~-------------------~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKH-G-------------------EFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHc-c-------------------cHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 99999999999 6666666666542 1 2667777777 577789999886633
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=12 Score=36.49 Aligned_cols=139 Identities=10% Similarity=0.052 Sum_probs=93.2
Q ss_pred ccchHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc
Q 045108 109 DTVAIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS 185 (425)
Q Consensus 109 ~~~~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~ 185 (425)
...++++++.-..++...+.- -..|-.--.+.-+..+.....-+..+++.+-.+.|+|+-+=--..-.++..+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~---- 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG---- 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh----
Confidence 345688888888777665554 1345544333322211234466777888888889999766554444444433
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
.+.+.+++.+..++.||-|.-.---+--++..++.. .+.++-+.+.++.=+.|.-||++..-+...
T Consensus 101 ----~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~--l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 101 ----NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN--LEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred ----chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 378999999999999999887755444444555542 366777788888889999999998877655
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.22 E-value=2.2 Score=48.51 Aligned_cols=131 Identities=6% Similarity=-0.220 Sum_probs=97.3
Q ss_pred HHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccch----------hHHhH
Q 045108 122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST----------LQWII 191 (425)
Q Consensus 122 lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~----------~~~~~ 191 (425)
+...+|.+..||-.=-...... ..+++.+..++..+..+|+...+|.+-..+..+....... ....+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~ 99 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW 99 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch
Confidence 3457788888885443333223 5789999999999999999999999999976654432210 01112
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
.-.+.+..++..++.|-+|-....-+...++. ..+..+..++.++.||.|..+-++..+.+...
T Consensus 100 -~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 100 -AIVEHICDKILLYGENKLALRTLAEAYAKLNE--NKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 34455555666688888888888899988886 67889999999999999999999999887653
No 96
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.92 E-value=4.1 Score=39.79 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCC---chhhhhHHHHHHHHHhhccc
Q 045108 112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPK---SEQAWSHRRWVINMISRNCS 185 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PK---sy~~W~hRrwll~~l~~~~~ 185 (425)
.++++.....++...|+. ..|+.+.+.+.... ..+++++..+..++..+|+ .+.+|.....+...++.
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~---g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~--- 232 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK---GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD--- 232 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC---
Confidence 368899999999999998 47888888888777 4789999999999987776 46677666666665543
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCchhh
Q 045108 186 TLQWIIERESELVEKIAERSKMNYRA 211 (425)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~A 211 (425)
......++.++++.+|.+-.|
T Consensus 233 -----~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 233 -----TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----HHHHHHHHHHHHHHCcCCHHH
Confidence 578889999999999988765
No 97
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.91 E-value=5.8 Score=42.64 Aligned_cols=125 Identities=8% Similarity=-0.072 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHcc--CC---cccHHHHHHHHHHHHhh--CCCchhhhhHHHHHHHHHhhc
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNK--QL---LPILMDELRLSAVVLSH--SPKSEQAWSHRRWVINMISRN 183 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~--~~---~~~l~~EL~~~~~lL~~--~PKsy~~W~hRrwll~~l~~~ 183 (425)
....++.+.+.++.++|++..||-.+..+.... .. ...+.........++.. .|-.+ ..|.-..+..+..
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala~~~~~~- 433 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP--RIYEILAVQALVK- 433 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHHHHHHhc-
Confidence 356788999999999999999888764422111 10 01123334444444443 44444 3455444444433
Q ss_pred cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS 246 (425)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S 246 (425)
..+++.....+++++.+| |..+|...+.+....+. .++.++.+.+.+.++|.+..
T Consensus 434 -----g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 434 -----GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred -----CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCch
Confidence 236889999999999999 67899999999888776 67889999999999999884
No 98
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.88 E-value=13 Score=40.83 Aligned_cols=172 Identities=12% Similarity=0.037 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-------------------------------CcccHHHHHHHHHHH
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-------------------------------LLPILMDELRLSAVV 159 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-------------------------------~~~~l~~EL~~~~~l 159 (425)
-.++++++.+.+|..-|++.-.|-..+++..... ....+.++-..++..
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4688999999999999999999999999887653 012345555666666
Q ss_pred HhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch---------------
Q 045108 160 LSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------------- 224 (425)
Q Consensus 160 L~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------------- 224 (425)
..+|||+.-+|-----+=.+.+. .+..-.++.++|+..|+|--.|.-..|+-.+-..
T Consensus 746 rlkNPk~~~lwle~Ir~ElR~gn--------~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp 817 (913)
T KOG0495|consen 746 RLKNPKNALLWLESIRMELRAGN--------KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP 817 (913)
T ss_pred HhcCCCcchhHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence 67777777777543222222222 2334457889999999999999999998654321
Q ss_pred -------------hhHHHHHHHHHHHHhhcCCChhHHHH--HHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHH
Q 045108 225 -------------EQVLNELKQSRNWSGLHVADNSCFHY--HRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNE 289 (425)
Q Consensus 225 -------------~~~~~EL~~~~~~i~~d~~N~SaW~y--R~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~ 289 (425)
..++...+...+.++.||+|-.+|.+ +..+...- . ++--+...
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~---------------e-------ed~kev~~ 875 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT---------------E-------EDQKEVLK 875 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC---------------H-------HHHHHHHH
Confidence 12345577777888888887766554 44333211 0 11122234
Q ss_pred HHHhhcCCCccHHHHHHHHHHHH
Q 045108 290 SLIKRYVGREALWLHRRFLSLYL 312 (425)
Q Consensus 290 ~~I~~~p~neSaW~yrr~Ll~~~ 312 (425)
+.....|.|--.|.--+.-+..+
T Consensus 876 ~c~~~EP~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 876 KCETAEPTHGELWQAVSKDIKNW 898 (913)
T ss_pred HHhccCCCCCcHHHHHhhhHHhc
Confidence 45556999999998866655543
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.83 E-value=0.7 Score=34.37 Aligned_cols=58 Identities=12% Similarity=-0.067 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH 172 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h 172 (425)
.+++++....++..+|++..++.....++...+ .++++...+..++..+|+++.+|.-
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG---QYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT----HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 477999999999999999999999999888874 7899999999999999998777643
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.77 E-value=1.1 Score=49.16 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
-.++.++...+|.+||+|..+-..-.+++...+ ...+.+.-.++..+++.+|.|..+|.+-..++++.+. .
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G-~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--------~ 770 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELG-SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--------S 770 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--------h
Confidence 367899999999999999999999999888876 3456666679999999999999999999999999876 3
Q ss_pred HHHHHHHHHHHHhcCCc
Q 045108 192 ERESELVEKIAERSKMN 208 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkN 208 (425)
...-++...+++..+.|
T Consensus 771 ~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 771 KQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHHhhccCC
Confidence 56667777777776654
No 101
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.36 E-value=0.79 Score=47.92 Aligned_cols=70 Identities=9% Similarity=-0.061 Sum_probs=62.3
Q ss_pred hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhchhhHHHHHHHHHHHH
Q 045108 162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY---RAWNHRCWLVSFMTREQVLNELKQSRNWS 238 (425)
Q Consensus 162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY---~AW~hR~wll~~~~~~~~~~EL~~~~~~i 238 (425)
.+|+.+.+|+.+..++.+++. +++.+..++++++.+|.+. .+|+++..++..++. .++.++.+.+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr--------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr--~dEAla~LrrAL 139 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR--------VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE--GKKAADCLRTAL 139 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Confidence 689999999999999988765 7999999999999999998 459999999999886 678889999988
Q ss_pred hhc
Q 045108 239 GLH 241 (425)
Q Consensus 239 ~~d 241 (425)
+..
T Consensus 140 els 142 (453)
T PLN03098 140 RDY 142 (453)
T ss_pred Hhc
Confidence 873
No 102
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=90.52 E-value=7.6 Score=35.04 Aligned_cols=102 Identities=9% Similarity=-0.105 Sum_probs=78.4
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
++....-.-..-.+... ..++++..++..+...+|.++.-|..-.-+.+.++. +.+.+....+++..+|
T Consensus 32 ~~~l~~lY~~A~~ly~~---G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~--------~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEV---KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH--------WGEAIYAYGRAAQIKI 100 (157)
T ss_pred HHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCC
Confidence 44444444444444444 479999999999999999999999999999888775 7999999999999999
Q ss_pred CchhhhhHHHHHHHhhchh-hHHHHHHHHHHHHh
Q 045108 207 MNYRAWNHRCWLVSFMTRE-QVLNELKQSRNWSG 239 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~-~~~~EL~~~~~~i~ 239 (425)
.++.+-.|.+-+.-.++.. .-..-+..+-.|+.
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999998877752 12233444555553
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=90.12 E-value=40 Score=38.59 Aligned_cols=200 Identities=10% Similarity=-0.097 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc--cc-hhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN--CS-TLQ 188 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~--~~-~~~ 188 (425)
..++......+|.+|..+.+||.+-+.+-.+.......++-.....+-...+|+.|.+=.-=-..++.+... .+ .-.
T Consensus 546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 466778888888888888888888875444332011111212222222223366665443222333333221 12 223
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcccccc---
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHI--- 265 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~--- 265 (425)
....+.+++..++|..||||-||=+--+-|+..-+. +...++...+..+.-..+..+|-....++.....-+.+.
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~--~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR--FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC--chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998888888866443 333333333333333334444544444432210000000
Q ss_pred --------CCCCCC-----CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 045108 266 --------QDNNSS-----GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLI 313 (425)
Q Consensus 266 --------~~~~~~-----~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~ 313 (425)
..+.+. ++.--....+.+..++...++...|+|.++=+.+-.++..+.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 000000 000001134677888889999999999999888877776644
No 104
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.31 E-value=1.5 Score=32.54 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=49.7
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (425)
+.+.+++.++..++..+|++..++.....++.+.+. +++...++.+++..+|.|-.+|
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------YDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------HHHHHHHHHCCHGGGTTHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCHHHHH
Confidence 468999999999999999999999988888877665 6889999999999999874443
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=89.28 E-value=12 Score=42.87 Aligned_cols=138 Identities=12% Similarity=0.017 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc--hhHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS--TLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~--~~~~ 189 (425)
.+++|+.+.++|..||++|.||-.-+..+..++ .+++++-+-.-.+....|++--+|.+-.-+..+.....+ ....
T Consensus 18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~--q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~ 95 (1238)
T KOG1127|consen 18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLG--QDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAK 95 (1238)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcc--CCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHH
Confidence 478999999999999999999999999998886 668999999999999999999999987777765221100 0001
Q ss_pred h--------HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 190 I--------IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 190 ~--------~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
. ...+..-.+...+.+|+.|+.+.--- ++ .. .+.+-+..-.+-.+.|++-+-+|.-...+..
T Consensus 96 ~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hl-l~---a~-eigei~~trq~~se~N~~k~~a~~rl~Qi~l 165 (1238)
T KOG1127|consen 96 CYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHL-LV---AK-EIGEIAVTRQDASEKNPKKFWAFCRLGQIQL 165 (1238)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHH-Hh---hH-HHHHHHhchHhhhhhCHHHHHhhCchHHHHh
Confidence 1 11222333444555666665543221 11 11 1222233333666677777777776666554
No 106
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.27 E-value=10 Score=36.38 Aligned_cols=126 Identities=9% Similarity=-0.064 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
.+...+..-++++|..+|++|-+|.-|-.+.++++. .+..-+...+++..+|+|-.+=+.=+|.+..-+.
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~-- 118 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR-- 118 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC--
Confidence 478899999999999999999999999999999876 3455567889999999999988888888877664
Q ss_pred HHHHHHHHHHHHhh--cCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHH
Q 045108 227 VLNELKQSRNWSGL--HVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW 302 (425)
Q Consensus 227 ~~~EL~~~~~~i~~--d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW 302 (425)
.++.+....+.+.. .+.-.-.|-....+-.+. + -.+..-++.++.++.+|++-.+-
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-g-------------------q~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKA-G-------------------QFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-C-------------------CchhHHHHHHHHHHhCcCCChHH
Confidence 56777777777652 111122333333222221 0 12334456677888899887653
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=89.06 E-value=12 Score=39.55 Aligned_cols=102 Identities=8% Similarity=-0.023 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++.+..++..-|+|.-.|..+..++.... ...++.+-..+++...|.++.+|-.....+.+.++ .
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~--------~ 390 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN---KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK--------P 390 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC--------h
Confidence 366888999999999999999999999988774 68999999999999999999999999988888776 4
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
.+.+..+...+..+|.+-..|.+-.-.....+.
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 688889999999999999999997777766654
No 108
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=88.82 E-value=17 Score=37.53 Aligned_cols=129 Identities=8% Similarity=-0.197 Sum_probs=90.8
Q ss_pred HHHHHHHhCC----ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108 118 HSKALLLLSC----DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIER 193 (425)
Q Consensus 118 ~t~~lLl~np----e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (425)
....+....| +...++-.-...+... +..++.+..+...+.++|++...... ++........ .....
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~---g~~~~A~~~l~~~l~~~pd~~~~~~~---~l~~~~~l~~---~~~~~ 317 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDC---DDHDSAQEIIFDGLKKLGDDRAISLP---LCLPIPRLKP---EDNEK 317 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHC---CChHHHHHHHHHHHhhCCCcccchhH---HHHHhhhcCC---CChHH
Confidence 4444556667 3667777666666665 46899999999999999999765311 2222221110 12356
Q ss_pred HHHHHHHHHHhcCCch--hhhhHHHHHHHhhchhhHHHHHHHHH--HHHhhcCCChhHHHHHHHHHHHh
Q 045108 194 ESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLNELKQSR--NWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 194 EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~--~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
-++.+++.++.+|.|. ..-..-+|+.-+.+. +.+..++.+ ..+..+|++..+. +...++..+
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~--~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~ 383 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE--FIEAADAFKNVAACKEQLDANDLA-MAADAFDQA 383 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc--HHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHc
Confidence 6889999999999999 777778999877665 888899999 6888999887766 556666553
No 109
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.10 E-value=11 Score=34.94 Aligned_cols=106 Identities=4% Similarity=-0.033 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch--------hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF 262 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~ 262 (425)
++...+-.+....+||.+..+++.-+-.|..+.. ..+++.+.-.+..|.+||..+.+.-.....+..+-..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l- 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL- 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh-
Confidence 5666677888899999999998887777665531 3678889999999999999998877777666543211
Q ss_pred cccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 263 CHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
..+..+....++...++.+++...+|+|+.-+.-+
T Consensus 86 --------~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 86 --------TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred --------cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 00123456789999999999999999999765544
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.41 E-value=22 Score=40.71 Aligned_cols=173 Identities=9% Similarity=-0.031 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-------------------hhh
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-------------------QAW 170 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-------------------~~W 170 (425)
...+++++.+...+..+|+...++.+-+-+..... .+.+.... .++...++.. .+-
T Consensus 45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~---~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 45 NLTDEAKDICEEHLKEHKKSISALYISGILSLSRR---PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLAL 119 (906)
T ss_pred CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc---chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence 34578999999999999999999999998665543 23333333 4444444333 333
Q ss_pred hHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch-----------------hhHHHHHHH
Q 045108 171 SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR-----------------EQVLNELKQ 233 (425)
Q Consensus 171 ~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~-----------------~~~~~EL~~ 233 (425)
....-+..+++. ..+..+..+++++.+|.|..|=++=...+..... ..+...++.
T Consensus 120 ~~LA~~Ydk~g~--------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 120 RTLAEAYAKLNE--------NKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred HHHHHHHHHcCC--------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 333333333332 5778889999999999999999887777765410 012233444
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC---c---hhhhhHHHHHHHHHHHHHHhhcCCCccH
Q 045108 234 SRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG---Y---FVETYQVWKEELDWNESLIKRYVGREAL 301 (425)
Q Consensus 234 ~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~---~---~~~~~~~~~~EL~~~~~~I~~~p~neSa 301 (425)
-.+.|..+|.|+.-+-+ ++.++.+.... +...+ + .-....-|.+-+.+....++.+|.|.=+
T Consensus 192 W~k~~~~~~~d~d~f~~---i~~ki~~~~~~---~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLR---IERKVLGHREF---TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HHHHHhcCcccchHHHH---HHHHHHhhhcc---chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 45555555555544322 22222211000 00000 0 0001133567788888888889987765
No 111
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.27 E-value=6.1 Score=36.52 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHccC-------CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc-
Q 045108 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-------LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS- 185 (425)
Q Consensus 114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-------~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~- 185 (425)
.+.+..+.....||.+..+++.=+-.|..+. ....+++++.-++.+|.++|+...+-..-.-.+..+....+
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d 88 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD 88 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC
Confidence 3455667778899999999888787776553 12357888888999999999986554444444433332221
Q ss_pred --hhHHhHHHHHHHHHHHHHhcCCch
Q 045108 186 --TLQWIIERESELVEKIAERSKMNY 209 (425)
Q Consensus 186 --~~~~~~~~EL~~~~~~l~~~pkNY 209 (425)
.....++....+..++...+|.|-
T Consensus 89 ~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 89 TAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 234556777777777777777664
No 112
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.59 E-value=0.68 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.041 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 197 LVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 197 ~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
++.++++.+|.|..+|....+++...+.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~ 28 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD 28 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC
Confidence 3578889999999999998888877654
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=85.20 E-value=28 Score=38.64 Aligned_cols=63 Identities=8% Similarity=0.086 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM 255 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll 255 (425)
+.+-.+..+..++.+|--...|.-++.+-=++.+ ++...+.....+..+|.|+-+|+......
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek--~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEK--EQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh--hHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 4555556666666666666666666555544433 45555666666666666666666655443
No 114
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.56 E-value=12 Score=36.56 Aligned_cols=91 Identities=5% Similarity=-0.125 Sum_probs=71.0
Q ss_pred ccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC---chhhhhHHHHHHH
Q 045108 147 PILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM---NYRAWNHRCWLVS 220 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk---NY~AW~hR~wll~ 220 (425)
..+.+.+..+..++..+|++. .++.....+....++ +.+.+....++++.+|. ...||.....+..
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~--------~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK--------KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 368999999999999999994 677655555554433 68888999999988776 5778877777777
Q ss_pred hhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 221 FMTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 221 ~~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
.++. .......+++.++.+|....+
T Consensus 229 ~~g~--~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 229 DKGD--TAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HcCC--HHHHHHHHHHHHHHCcCCHHH
Confidence 6654 678889999999999877654
No 115
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=84.23 E-value=6.2 Score=30.78 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHhhCCC--chhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108 148 ILMDELRLSAVVLSHSPK--SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (425)
Q Consensus 148 ~l~~EL~~~~~lL~~~PK--sy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (425)
.+++++.+.+.++...|. +..+|.....++.+.++ +.+.+.++.+ .+.+|+|..+.....-++-.++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 455555666666655553 34444445555444433 4555555555 5555555444444444444443
No 116
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=83.86 E-value=31 Score=39.37 Aligned_cols=137 Identities=7% Similarity=-0.068 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
...+.+++++.++|..+|.|.-|-|-=+.+|-..+ .+.+++..+.++-..--+++.+|-.-.-|+-..+.
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg---~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q------- 695 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG---RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ------- 695 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc---CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH-------
Confidence 45688999999999999999999998888887663 67889999999988777899999988877776654
Q ss_pred hHHHHHHHHHHHHHhcC-C-chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108 190 IIERESELVEKIAERSK-M-NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL 259 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~p-k-NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~ 259 (425)
+...+++.+.++...- + ++++=+|-+-++-. ...+.+..+...+.+...|.|.+.-..+..+++++-
T Consensus 696 -y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~--~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 696 -YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE--AGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred -HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 6888888888887653 2 34444442222111 124778889999999999999999999999988863
No 117
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.74 E-value=1.4 Score=28.90 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=19.6
Q ss_pred HHHHHHhCCccHHHHHHHHHHHHccC
Q 045108 119 SKALLLLSCDFATAWNSRKLIVSNKQ 144 (425)
Q Consensus 119 t~~lLl~npe~~TaWn~Rr~lL~~~~ 144 (425)
..++|.+||++..+|+....++...+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g 27 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG 27 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc
Confidence 45677888888888888887777663
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=83.68 E-value=5.3 Score=31.18 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 112 AIEVMIHSKALLLLSCD--FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe--~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
.++++...+.++..+|. +..+|.....++...+ .+.+++.++.. +..+|++..+.....-++.+++.
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~---~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~------- 73 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG---KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK------- 73 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT---HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC---CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-------
Confidence 46788899999999994 5677888888888774 79999999999 88888887777666666666655
Q ss_pred hHHHHHHHHHH
Q 045108 190 IIERESELVEK 200 (425)
Q Consensus 190 ~~~~EL~~~~~ 200 (425)
+++.+++.++
T Consensus 74 -y~eAi~~l~~ 83 (84)
T PF12895_consen 74 -YEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHhc
Confidence 5666666554
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=83.57 E-value=26 Score=40.27 Aligned_cols=133 Identities=10% Similarity=-0.025 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
...++.+.-.+|.++|....+|-+-+.+.... .+..++.....++...+|-.+++|.+---..-... .|
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~---~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~w 542 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDS---DDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TW 542 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cH
Confidence 56678888888999999999999988888766 26788889999999999999999987655443322 36
Q ss_pred HHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNY--RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY--~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
+..+..|....+..|.-- ..|.||+-.. +........+......++.||.|+-+|--..-....
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yy--Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~ 608 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYY--LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE 608 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccc--cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 777777888888887644 4555543322 223345667788888899999999999876655443
No 120
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.57 E-value=11 Score=35.57 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHHHHhCCccHH-----HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc
Q 045108 110 TVAIEVMIHSKALLLLSCDFAT-----AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC 184 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~T-----aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~ 184 (425)
...+++...+..+|.++|...| ....|...+.++ ...+..+.-|++++..+|-+-.+--.|..+..++..
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl---~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek-- 183 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL---RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK-- 183 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh---hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh--
Confidence 3467888999999999999987 222333333333 457888999999999999998888888888887743
Q ss_pred chhHHhHHHHHHHHHHHHHhcCCchhh
Q 045108 185 STLQWIIERESELVEKIAERSKMNYRA 211 (425)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkNY~A 211 (425)
+++.++-..++++.+|++-.|
T Consensus 184 ------~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 184 ------YEEALEDYKKILESDPSRREA 204 (271)
T ss_pred ------HHHHHHHHHHHHHhCcchHHH
Confidence 789999999999999998744
No 121
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.12 E-value=14 Score=39.34 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHHHHHH---HHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHH
Q 045108 76 QILIPVYKAAKHAFISA---LRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDE 152 (425)
Q Consensus 76 ~~l~~ly~~A~~~f~~~---l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~E 152 (425)
..++.+|+.|...|..- ...|-+-.. ......++-....++|.++|++...|-+=........ ..++..
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k------k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n--~ni~sa 159 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK------KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN--LNIESA 159 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH------HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc--cchHHH
Confidence 34677999998887521 111100000 0112356778899999999999999999776665543 347888
Q ss_pred HHHHHHHHhhCCCchhhhh--HHHHHH
Q 045108 153 LRLSAVVLSHSPKSEQAWS--HRRWVI 177 (425)
Q Consensus 153 L~~~~~lL~~~PKsy~~W~--hRrwll 177 (425)
-.++...|+.||.|+.+|. .|..+.
T Consensus 160 RalflrgLR~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 160 RALFLRGLRFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999996 344433
No 122
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.80 E-value=3 Score=26.53 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (425)
Q Consensus 168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (425)
.+|..+..+...++. +.+.+..+.++++.+|.|
T Consensus 2 ~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD--------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCC--------chHHHHHHHHHHHHCcCC
Confidence 478888888887765 789999999999999975
No 123
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.06 E-value=21 Score=37.10 Aligned_cols=161 Identities=11% Similarity=0.033 Sum_probs=112.1
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh---ccch-
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR---NCST- 186 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~---~~~~- 186 (425)
..+++.+.|-.+|.+++.+..+-..|+.++-.. .............|+..|..+.+=.-++-+ .++.. .+.+
T Consensus 184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~---~~~~ka~~hf~qal~ldpdh~~sk~~~~~~-k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYN---DNADKAINHFQQALRLDPDHQKSKSASMMP-KKLEVKKERGNDA 259 (486)
T ss_pred cchhHHHHHHHHHhcccchhHHHHhcccccccc---cchHHHHHHHhhhhccChhhhhHHhHhhhH-HHHHHHHhhhhhH
Confidence 467788899999999999999999999988766 367788888888998888877654433321 11111 0000
Q ss_pred -hHHhHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc
Q 045108 187 -LQWIIERESELVEKIAERSKMNY----RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG 261 (425)
Q Consensus 187 -~~~~~~~EL~~~~~~l~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~ 261 (425)
....+...-++...++..+|.|- +....|.-+.-++++ ..+.+..|+..+++|++=.-|.+-|...-..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--l~eaisdc~~Al~iD~syikall~ra~c~l~---- 333 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--LREAISDCNEALKIDSSYIKALLRRANCHLA---- 333 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--chhhhhhhhhhhhcCHHHHHHHHHHHHHHHH----
Confidence 12346677788889999999864 445557767666665 6788999999999999766665555433222
Q ss_pred ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCC
Q 045108 262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG 297 (425)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ 297 (425)
..-|++.+++.++++...-+
T Consensus 334 ----------------le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 ----------------LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ----------------HHHHHHHHHHHHHHHhhccc
Confidence 23477777777777765433
No 124
>PRK15331 chaperone protein SicA; Provisional
Probab=80.15 E-value=35 Score=31.07 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=85.6
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccH
Q 045108 70 KLGISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPIL 149 (425)
Q Consensus 70 ~lgi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l 149 (425)
-.||+...+-.+|..|...|.+ ..-+++......+...+|-+...|.-=..+.+.. +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~------------------Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~---k~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQ------------------GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK---KQF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH---HHH
Confidence 3488999999999999877643 2346788889999999999999888777777776 479
Q ss_pred HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHH
Q 045108 150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE 203 (425)
Q Consensus 150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (425)
+.++.+...+....+++|..-.|-..+...+++ ......+...+++
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~--------~~~A~~~f~~a~~ 133 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK--------AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHcccCCCCccchHHHHHHHhCC--------HHHHHHHHHHHHh
Confidence 999999999999999999999999999888876 3556666666655
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=79.92 E-value=37 Score=35.28 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHH-HHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108 193 RESELVEKIAERSKMNYRAWNHRC-WLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM 255 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~-wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll 255 (425)
+.+.++.+++..+|.++....--. +++.. + ..+..++..++.+..-|++|-+|.+...+.
T Consensus 218 ~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~--~~~lAL~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 218 EAIRLLNEALKENPQDSELLNLQAEFLLSK-K--KYELALEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 444455555555555554444322 22211 1 234455555555555555555555544443
No 126
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=79.11 E-value=1.1e+02 Score=33.96 Aligned_cols=109 Identities=10% Similarity=-0.024 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHH-HHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHH-------------
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRK-LIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI------------- 177 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr-~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll------------- 177 (425)
.+++......++...|+--..|-.-. .--.+ .+......++..++..||.|-.+|-.---+.
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~a----gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKA----GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc----CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 46677788888999998888886432 22222 3678899999999999999999996543222
Q ss_pred HHHhhccch------------hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 178 NMISRNCST------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 178 ~~l~~~~~~------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
.+......+ .....++++.+|+.+++.+|-..-.|--.+.+..+|+.
T Consensus 642 akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 642 AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH
Confidence 221111110 24567889999999999999988899888888888764
No 127
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.99 E-value=5 Score=25.20 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (425)
Q Consensus 168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (425)
.+|.+...+....++ +++.++.+.++++.+|.|
T Consensus 2 ~~~~~lg~~~~~~~~--------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN--------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHCcCC
Confidence 578888888887765 789999999999999986
No 128
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.58 E-value=6.1 Score=27.04 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH
Q 045108 132 AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH 172 (425)
Q Consensus 132 aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h 172 (425)
+|....+..... +.++++...+..++..+|++..+|..
T Consensus 3 ~~~~la~~~~~~---G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRL---GQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 455666666666 47899999999999999999999864
No 129
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.58 E-value=6.6 Score=24.89 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc
Q 045108 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS 166 (425)
Q Consensus 131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs 166 (425)
.+|..++.+....+ .+++.+..++.+|..+|++
T Consensus 2 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLG---DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence 47888998888874 7899999999999999974
No 130
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.49 E-value=26 Score=36.26 Aligned_cols=85 Identities=13% Similarity=0.003 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
...++..++.+|.+.|.|.-|..-|++.+..+. .++.+...+.+++...|.|-.+=+--.-+-+++.. ..
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~---e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~-------~~ 342 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALG---EYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE-------YE 342 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-------HH
Confidence 457888899999999999999988888888774 78889999999999999886654433333333332 34
Q ss_pred HHHHHHHHHHHHhcC
Q 045108 192 ERESELVEKIAERSK 206 (425)
Q Consensus 192 ~~EL~~~~~~l~~~p 206 (425)
..|-++..+|+..-+
T Consensus 343 ~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 343 EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccc
Confidence 556666666666544
No 131
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=16 Score=38.05 Aligned_cols=122 Identities=12% Similarity=0.038 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHH--HHHccC-------CcccHHHHHHHHHHHHhhCCCchh----hhhHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKL--IVSNKQ-------LLPILMDELRLSAVVLSHSPKSEQ----AWSHRRWVIN 178 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~--lL~~~~-------~~~~l~~EL~~~~~lL~~~PKsy~----~W~hRrwll~ 178 (425)
.+.+.......|.++|+|+++-..++. .|.... ..+.+..+-+..+..|.++|.|-. +.-.|.-+..
T Consensus 219 ~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 219 ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 456677888999999999987766542 121110 135688899999999999998753 3455666666
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 045108 179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA 243 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~ 243 (425)
+++. +.+.+.-|+.++.+||.-..|-.-|.-+-.- ...|++.++.+++.+...-+
T Consensus 299 rLgr--------l~eaisdc~~Al~iD~syikall~ra~c~l~--le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 299 RLGR--------LREAISDCNEALKIDSSYIKALLRRANCHLA--LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccCC--------chhhhhhhhhhhhcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccc
Confidence 6655 5889999999999999765565555544433 34589999999999887655
No 132
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=74.33 E-value=1.4e+02 Score=32.53 Aligned_cols=213 Identities=13% Similarity=0.025 Sum_probs=118.8
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
.-.+.++.|+.++.++|=|.++.-.+=.++-.++ .-.+=+.+.-.+...+|+++..|.--.--...+.+
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~---~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k-------- 327 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELG---KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK-------- 327 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhc---ccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC--------
Confidence 4566788999999999999998887766666553 33444556667777888888888655544444433
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch--------------------h------------hHHHHHHHHHHHH
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--------------------E------------QVLNELKQSRNWS 238 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--------------------~------------~~~~EL~~~~~~i 238 (425)
..+.-.+..++...||.--.||-.=+-.....+. | .+.-.=.+.....
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3455566666666666666666544333321110 0 1122234455555
Q ss_pred hhcCCChhHHHHHHHHHHHhhcc----------cccc-C-CCCC-C--------CchhhhhHHHHHHHHHHHHHHhhcCC
Q 045108 239 GLHVADNSCFHYHRRLMIWNLEG----------FCHI-Q-DNNS-S--------GYFVETYQVWKEELDWNESLIKRYVG 297 (425)
Q Consensus 239 ~~d~~N~SaW~yR~~ll~~l~~~----------~~~~-~-~~~~-~--------~~~~~~~~~~~~EL~~~~~~I~~~p~ 297 (425)
...|+|-=.-|+...|......- ..+. . .... . |..-.....+++.+.+.+++|.+.|.
T Consensus 408 ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 408 AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 56666655555544443211000 0000 0 0000 0 00011234678888899999998888
Q ss_pred CccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108 298 REALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360 (425)
Q Consensus 298 neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~ 360 (425)
|-+.-.-..+ +..+++. ++.=++..+.++...|+|.+
T Consensus 488 ~~~~~asig~-iy~llgn-------------------------ld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 488 DASTHASIGY-IYHLLGN-------------------------LDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred chhHHHHHHH-HHHHhcC-------------------------hHHHHHHHHHHHhcCCccHH
Confidence 8776555433 3322221 23445667788888888744
No 133
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=1.6e+02 Score=32.04 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-------------------------------CcccHHHHHHHHHHHHh
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-------------------------------LLPILMDELRLSAVVLS 161 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-------------------------------~~~~l~~EL~~~~~lL~ 161 (425)
+++-+...++-.+||.+..||-.-+..+-... ....++-+=.|...++.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 55666777777788888888877776654332 01223334444555555
Q ss_pred hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108 162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241 (425)
Q Consensus 162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d 241 (425)
++|..+-+-|.-.-+.-+..... .....++..+..+...+...++=-..|+.-+-+.++++. +++.+.+..+.+.+.
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~-~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~--~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYP-EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK--YEEAIDYYQKALLLS 485 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhH-HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh--HHHHHHHHHHHHHcC
Confidence 55555544444433322211100 011233444444444444444222334444444555444 678899999999999
Q ss_pred CCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q 045108 242 VADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKH 315 (425)
Q Consensus 242 ~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~ 315 (425)
|.|-+...--.++-..+ + .++..+++..+.+-+.|.|..+ +.++..++..
T Consensus 486 ~k~~~~~asig~iy~ll-g-------------------nld~Aid~fhKaL~l~p~n~~~----~~lL~~aie~ 535 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLL-G-------------------NLDKAIDHFHKALALKPDNIFI----SELLKLAIED 535 (611)
T ss_pred CCchhHHHHHHHHHHHh-c-------------------ChHHHHHHHHHHHhcCCccHHH----HHHHHHHHHh
Confidence 99988777666655432 2 2567789999999999999765 4455554443
No 134
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.61 E-value=1.1e+02 Score=30.49 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=66.4
Q ss_pred HHHHHHHhCCccHHHHHHHHHHHHccC---------CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhH
Q 045108 118 HSKALLLLSCDFATAWNSRKLIVSNKQ---------LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQ 188 (425)
Q Consensus 118 ~t~~lLl~npe~~TaWn~Rr~lL~~~~---------~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~ 188 (425)
-.+..+.-||.+..+|----..-.... .....+.-|.+++++|..||.+..+|-...-+..++-.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~------ 80 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD------ 80 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC------
Confidence 345667889999999964332222221 01235677899999999999999999887666665532
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHH-HHHHHhhc
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHR-CWLVSFMT 223 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR-~wll~~~~ 223 (425)
-..=.+-.++++..+|.++-.|... .|...++.
T Consensus 81 --~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 81 --SEKLAKKWEELLFKNPGSPELWREYLDFRQSNFA 114 (321)
T ss_pred --HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhc
Confidence 1222345788999999999999765 45554443
No 135
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=70.11 E-value=1.4e+02 Score=30.73 Aligned_cols=64 Identities=8% Similarity=-0.108 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHH-HHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSR-KLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN 178 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~R-r~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~ 178 (425)
.+++......+...+|++..+-..+ .++.... ..++..+...+.++..+|+++.+-....-+..
T Consensus 134 ~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~---g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~ 198 (398)
T PRK10747 134 EARANQHLERAAELADNDQLPVEITRVRIQLAR---NENHAARHGVDKLLEVAPRHPEVLRLAEQAYI 198 (398)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3445556666666677665443333 2333322 35677777777777777777765544444333
No 136
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=69.83 E-value=14 Score=22.97 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc
Q 045108 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS 166 (425)
Q Consensus 131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs 166 (425)
.+|..++.+....+ .+++++..+..++..+|++
T Consensus 2 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG---NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCcCC
Confidence 57888888888874 7899999999999999975
No 137
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.42 E-value=1.5e+02 Score=31.12 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHH--HhhccchhHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINM--ISRNCSTLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~--l~~~~~~~~~ 189 (425)
..++....+.++.+||...++-..-.-+|...+ .+++-=.+...++.+.--...- |++.- +.. .+
T Consensus 248 n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg---~~e~~~~L~~~Lf~~~~~ta~~-----wfV~~~~l~~-----~K 314 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG---GCEQDSALMDYLFAKVKYTASH-----WFVHAQLLYD-----EK 314 (564)
T ss_pred chHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc---CHhhHHHHHHHHHhhhhcchhh-----hhhhhhhhhh-----hh
Confidence 455666778888889988888887777777653 5666666666666644221222 23221 111 23
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
.++..|.+.+++++.+|+|-.|.--++-++.++++ .+..+-.....+.+-|.+--+
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALER--HTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--hHHHHHHHHHHHhcchhhHHH
Confidence 47899999999999999999999999999988886 344555555666666655544
No 138
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=68.11 E-value=14 Score=35.40 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=66.1
Q ss_pred HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108 155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS 234 (425)
Q Consensus 155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (425)
-++..|.++||-+.++||-.--+..-++ +...++.....++.||.+-+|--.|+--+-..++ +.-..+..
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~--------fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR--~~LAq~d~ 156 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGN--------FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--YKLAQDDL 156 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhccc--------chHHHHHhhhHhccCCcchHHHhccceeeeecCc--hHhhHHHH
Confidence 3467889999999999999877765443 6788999999999999999998888766655444 34445566
Q ss_pred HHHHhhcCCCh--hHHHH
Q 045108 235 RNWSGLHVADN--SCFHY 250 (425)
Q Consensus 235 ~~~i~~d~~N~--SaW~y 250 (425)
.++-..||+|- +-|-|
T Consensus 157 ~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred HHHHhcCCCChHHHHHHH
Confidence 67777888886 55655
No 139
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=67.53 E-value=1.1e+02 Score=34.12 Aligned_cols=117 Identities=9% Similarity=0.075 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
...++.+..+..+.+||=....|..++-+-.++ .+.+.....+....+..|.+.++||.-.-..-++++
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql---ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-------- 568 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQL---EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-------- 568 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHH---hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh--------
Confidence 346788889999999999999999888766665 367788888888899999999999987766666554
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL 240 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~ 240 (425)
-.+.......+++-+-.|...|-.=.-|....+. +++.+..+.+++.+
T Consensus 569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYHRLLDL 616 (777)
T ss_pred hHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHHHHHHh
Confidence 2566677777888887777777655444444443 67778887777653
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=66.48 E-value=39 Score=35.07 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
...++++....+|..+|..+...+.-.+.+...+ .++.++.....+....|..+..|.+---+..++++
T Consensus 215 ~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~---~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d-------- 283 (395)
T PF09295_consen 215 EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK---KYELALEIAKKAVELSPSEFETWYQLAECYIQLGD-------- 283 (395)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC--------
Confidence 3578899999999999999999999888887774 67999999999999999999999997777776654
Q ss_pred HHHHHHHHH
Q 045108 191 IERESELVE 199 (425)
Q Consensus 191 ~~~EL~~~~ 199 (425)
++++|..+.
T Consensus 284 ~e~ALlaLN 292 (395)
T PF09295_consen 284 FENALLALN 292 (395)
T ss_pred HHHHHHHHh
Confidence 567775444
No 141
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=65.67 E-value=14 Score=25.12 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhH
Q 045108 169 AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH 214 (425)
Q Consensus 169 ~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~h 214 (425)
+|.-...+....+. +++..+++.++++.+|.|-.+|..
T Consensus 3 ~~~~la~~~~~~G~--------~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQ--------PDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCcCCHHHHHH
Confidence 44444555555544 688999999999999999999865
No 142
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=64.22 E-value=1.5e+02 Score=29.00 Aligned_cols=128 Identities=13% Similarity=0.009 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIER 193 (425)
Q Consensus 114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (425)
.+....-...+.||+...+-++-+-+.... +-.+.+....+++..+||...+=+-- ...++.. ..+..
T Consensus 51 ~a~~al~~~~~~~p~d~~i~~~a~a~~~~G----~a~~~l~~~~~~~~~~~~d~~ll~~~--gk~~~~~------g~~~~ 118 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSIAKLATALYLRG----DADSSLAVLQKSAIAYPKDRELLAAQ--GKNQIRN------GNFGE 118 (257)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHhcc----cccchHHHHhhhhccCcccHHHHHHH--HHHHHHh------cchHH
Confidence 355566677789999988833333333332 44677888899999999997765441 1112211 23688
Q ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108 194 ESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM 255 (425)
Q Consensus 194 EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll 255 (425)
.+..+.++....|.|-.+|+-.+-++.+.+. ....=..+.+.++..+.+-+.-+...+.+
T Consensus 119 A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr--~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 119 AVSVLRKAARLAPTDWEAWNLLGAALDQLGR--FDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHhccCCCChhhhhHHHHHHHHccC--hhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 9999999999999999999999999999887 34455567788899999888888876654
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=63.04 E-value=1.7e+02 Score=29.17 Aligned_cols=125 Identities=10% Similarity=-0.027 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..+..+...+.-|..||.+..=|-.=+++..... ....++.-...+++..|+|+.+|--=..++-.-... .+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~---~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-----~~ 208 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALG---RASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-----QM 208 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----cc
Confidence 3566777888999999999999999998888774 678899999999999999999998666655443221 12
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
-.+--.++.+++..||.|-.+=++=.+-...-+ .+...+..-..+++..|-|-
T Consensus 209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~g--~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 209 TAKARALLRQALALDPANIRALSLLAFAAFEQG--DYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcCCCCC
Confidence 245557889999999999988666444433322 46777888888887777664
No 144
>PRK10941 hypothetical protein; Provisional
Probab=60.93 E-value=74 Score=31.22 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA 169 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~ 169 (425)
.-+.+|.+++.+|.++|+...-|--|+.+...++ ....++.-++..+...|+.+.+
T Consensus 196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~---c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLD---CEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhCCCchhH
Confidence 3466777777777777777777777777776663 4566666666667777766654
No 145
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=60.07 E-value=63 Score=33.88 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
...+.+-+..++.|.++|.+..|=+...++++-. +..++.+.+++..|...|++. +=+|-.-++.. ..
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E---g~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A--------~N 485 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE---GPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRA--------QN 485 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh---CccchHHHHHHHHHhhccccH-HHHHHHHHHHH--------hh
Confidence 4556777888888899999888888888877755 356888888888888888763 11222222222 22
Q ss_pred hHHHHHHHHHHHHHhcCCchhh
Q 045108 190 IIERESELVEKIAERSKMNYRA 211 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~A 211 (425)
.+++.|+...+++..||+|-.+
T Consensus 486 e~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 486 EPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hHHHHHHHHHHHHhcCccchHH
Confidence 3678888888888888877544
No 146
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=53.03 E-value=3.3e+02 Score=29.43 Aligned_cols=135 Identities=7% Similarity=-0.011 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
+++|+..+.+|..+|........+.+++.+.+ ++.++...++.+-..++.. |.+-.+.....- -....+
T Consensus 211 ~~Al~~Id~aI~htPt~~ely~~KarilKh~G---~~~~Aa~~~~~Ar~LD~~D-------RyiNsK~aKy~L-Ra~~~e 279 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTLVELYMTKARILKHAG---DLKEAAEAMDEARELDLAD-------RYINSKCAKYLL-RAGRIE 279 (517)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCChhh-------HHHHHHHHHHHH-HCCCHH
Confidence 46777777777777777777777777777663 6677777777766655544 222222111000 001134
Q ss_pred HHHHHHHHHHHhc--CCch-----hhhhHHHHHHHhhchhhHHHHHHHHHH------HHhhcCCChhHHHHHHHHHHHh
Q 045108 193 RESELVEKIAERS--KMNY-----RAWNHRCWLVSFMTREQVLNELKQSRN------WSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 193 ~EL~~~~~~l~~~--pkNY-----~AW~hR~wll~~~~~~~~~~EL~~~~~------~i~~d~~N~SaW~yR~~ll~~l 258 (425)
+..+.+......+ |.+. ..|.....--.+.....+...|..+.. -+.-|--|||.|..|+..+...
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y 358 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAY 358 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHH
Confidence 4444444333332 2221 145443332222211223333333322 2335778999999999877654
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.13 E-value=3e+02 Score=28.68 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY 209 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY 209 (425)
..+..++..|+.+|...|+|.-+-.-|.-++..+.. ++.....+.++++.+|.|-
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e--------~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE--------YDLARDDFQKALKLEPSNK 325 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhCCCcH
Confidence 467888999999999999999988888888777665 6788888899999999883
No 148
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=48.83 E-value=34 Score=21.31 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108 168 QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (425)
Q Consensus 168 ~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (425)
.+|....-+...++. +++.+....++++.+|+|
T Consensus 2 ~~~~~lg~~y~~~~~--------~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD--------YEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTS--------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCC
Confidence 356666666666554 688999999999999954
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=46.56 E-value=38 Score=25.53 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=43.9
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh---C-CCc---hhhhhHHHHHHHHHhhccchhHHhHHHHHHHHH
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH---S-PKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVE 199 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~---~-PKs---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~ 199 (425)
|+-.++++....++... ..+++++..+..++.. . +++ ..+++....+....++ +++.+++.+
T Consensus 2 ~~~a~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~ 70 (78)
T PF13424_consen 2 PDTANAYNNLARVYREL---GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD--------YEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHH
Confidence 44566777788888776 4789999999988863 1 222 3344444555555443 678888888
Q ss_pred HHHHhc
Q 045108 200 KIAERS 205 (425)
Q Consensus 200 ~~l~~~ 205 (425)
++++..
T Consensus 71 ~al~i~ 76 (78)
T PF13424_consen 71 KALDIF 76 (78)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 887753
No 150
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=46.29 E-value=2.2e+02 Score=28.42 Aligned_cols=98 Identities=9% Similarity=-0.071 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc----cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhH
Q 045108 152 ELRLSAVVLSHSPKSEQAWSHRRWVINMISRN----CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (425)
Q Consensus 152 EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~----~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (425)
...-++..+..||.+..+|--=--.-..+... ........+.-|.++++|++.+|.|...|....-+...+-. -
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~--~ 81 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD--S 81 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--H
Confidence 44456778899999999995322222222111 11234556788899999999999888887765544444321 2
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHH
Q 045108 228 LNELKQSRNWSGLHVADNSCFHYH 251 (425)
Q Consensus 228 ~~EL~~~~~~i~~d~~N~SaW~yR 251 (425)
..-.+.-++++..||.++.-|.-.
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHH
Confidence 333566788899999999999643
No 151
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=46.20 E-value=1.2e+02 Score=29.93 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhCCCchhhh-------hHHHHHHHHHhhcc--c-----hhHHhHHHHHHHHHHHHHhcCCchhhhhHHH
Q 045108 151 DELRLSAVVLSHSPKSEQAW-------SHRRWVINMISRNC--S-----TLQWIIERESELVEKIAERSKMNYRAWNHRC 216 (425)
Q Consensus 151 ~EL~~~~~lL~~~PKsy~~W-------~hRrwll~~l~~~~--~-----~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~ 216 (425)
.-+..+..=...+|+||.+| +++-|-+.--+-.. + ......+.......++++.+||-..|...-.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 35667777788999999654 44555443111100 0 1335567777888999999999999999988
Q ss_pred HHHHhhchhhHHHHH
Q 045108 217 WLVSFMTREQVLNEL 231 (425)
Q Consensus 217 wll~~~~~~~~~~EL 231 (425)
-+...++.+.|..+|
T Consensus 141 ~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 141 NISAYFGEPDWLAAL 155 (277)
T ss_pred HHHhhcCCchHHHHH
Confidence 888888888777664
No 152
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.81 E-value=55 Score=34.62 Aligned_cols=90 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
..+.....+..+++..+|.+...|.-|.....+.. .+...+.=+.++++.+|+.--|..-|+-.+..+..
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e--------~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-- 87 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVE--------SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-- 87 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeec--------hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH--
Confidence 35778888888999999999999988874444333 25677777888888888888777666555555443
Q ss_pred HHHHHHHHHHHHhhcCCChh
Q 045108 227 VLNELKQSRNWSGLHVADNS 246 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~S 246 (425)
..+.+....+|....|.+--
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 55667777777777776654
No 153
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=43.16 E-value=89 Score=27.77 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc-CC---chhhhhHHHHHHHhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS-KM---NYRAWNHRCWLVSFM 222 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~-pk---NY~AW~hR~wll~~~ 222 (425)
.++..+|+.+.+.|...|+...++|.|-..+.--++ .++.|+-++++++.. ++ --+++..|+-+....
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 578889999999999999999999999877654332 356666666666643 22 234555566555544
Q ss_pred c
Q 045108 223 T 223 (425)
Q Consensus 223 ~ 223 (425)
+
T Consensus 129 g 129 (175)
T KOG4555|consen 129 G 129 (175)
T ss_pred C
Confidence 4
No 154
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=42.27 E-value=1.5e+02 Score=26.47 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHh-hCCCch---hhhhHHHHHHHHHhh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLS-HSPKSE---QAWSHRRWVINMISR 182 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~-~~PKsy---~~W~hRrwll~~l~~ 182 (425)
.-+++|+...++|.+.|+..+|.|.|...+.-- .+.+++|.-++.+|. .+|+-- +++..|.-+...++.
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq---~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQ---GDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHc---CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 357899999999999999999999998877644 356788888888887 355544 455566666655544
No 155
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.75 E-value=1.5e+02 Score=30.02 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=65.5
Q ss_pred HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHH-HHHHHHhhccchhHHhHHHHHHHHHHHH
Q 045108 124 LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRR-WVINMISRNCSTLQWIIERESELVEKIA 202 (425)
Q Consensus 124 l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRr-wll~~l~~~~~~~~~~~~~EL~~~~~~l 202 (425)
..-|...+.|..--..+.+.+ .+.+--..+..+|++||-+..+|-+-. .=+.-.. .++.--.+..+.+
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k---~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a--------ni~s~Ra~f~~gl 169 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKK---MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA--------NIESSRAMFLKGL 169 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhc--------cHHHHHHHHHhhh
Confidence 456788899987777676663 567777899999999999999998732 2122111 2455667788899
Q ss_pred HhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHh
Q 045108 203 ERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSG 239 (425)
Q Consensus 203 ~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~ 239 (425)
+.+|+|--.|.-- +.-||.++++++.
T Consensus 170 R~N~~~p~iw~ey-----------fr~El~yiTKL~~ 195 (435)
T COG5191 170 RMNSRSPRIWIEY-----------FRMELMYITKLIN 195 (435)
T ss_pred ccCCCCchHHHHH-----------HHHHHHHHHHHHh
Confidence 9999998888431 2346666666654
No 156
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=38.67 E-value=2.8e+02 Score=29.89 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=68.5
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHH-HHHHHHHhhccchhH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR-RWVINMISRNCSTLQ 188 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hR-rwll~~l~~~~~~~~ 188 (425)
....+++..+..++.--+.+.+.|..--....+.. .+.+--..+..+|..||+++.+|-+- .|.+.--.
T Consensus 85 si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~---~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~------- 154 (568)
T KOG2396|consen 85 SIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKK---TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL------- 154 (568)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc-------
Confidence 34577888899998888889999976555555442 35666788999999999999999886 44444221
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhh
Q 045108 189 WIIERESELVEKIAERSKMNYRAWN 213 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~ 213 (425)
..+..-++..+.++.||.+--.|.
T Consensus 155 -ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 155 -NIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred -chHHHHHHHHHHhhcCCCChHHHH
Confidence 145566777888888888888774
No 157
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.48 E-value=69 Score=33.92 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
..+.....+..++++.+|.|-.-|.-|... ++....+...+....++|+.+|+..-|+..|.....++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a--~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALA--HLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhh--heeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 457888899999999999999999999843 34445578899999999999999999988886555443
No 158
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=35.15 E-value=6.1e+02 Score=27.40 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCC----CccHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG----REALW 302 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~----neSaW 302 (425)
..++++....+++.+| +-+--+-|..|+..++.. +...-++.++..+.+ .-.+|
T Consensus 275 ~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLel---------------------q~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 275 LREAIKMFRDLLKEFP-NLDNLNIRENLIEALLEL---------------------QAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred hHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhc---------------------CCHHHHHHHHHHhccccCCchHHH
Confidence 5678999999998877 334445566777776543 112334556666643 24789
Q ss_pred HHHHHHHH
Q 045108 303 LHRRFLSL 310 (425)
Q Consensus 303 ~yrr~Ll~ 310 (425)
+|-+.|+.
T Consensus 333 ~YTaALLk 340 (539)
T PF04184_consen 333 CYTAALLK 340 (539)
T ss_pred HHHHHHHH
Confidence 99887775
No 159
>PRK10941 hypothetical protein; Provisional
Probab=35.07 E-value=1.2e+02 Score=29.77 Aligned_cols=58 Identities=9% Similarity=-0.081 Sum_probs=50.1
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF 248 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW 248 (425)
..++..|.+++.++..+|..-+-|.=|+.+..+++. +..++...+.+++..|.+-.+=
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--EHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHhCCCchhHH
Confidence 347899999999999999999999999999999987 5677888888888888777663
No 160
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=31.85 E-value=1e+02 Score=18.67 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=17.7
Q ss_pred ccHHHHHHHHHHHHhhCCCc
Q 045108 147 PILMDELRLSAVVLSHSPKS 166 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKs 166 (425)
+..++++.....++..+|+|
T Consensus 14 g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTTS
T ss_pred cCHHHHHHHHHHHHHHCcCC
Confidence 46889999999999999986
No 161
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=29.97 E-value=2.1e+02 Score=29.05 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHH-HHHccCCcccHHHHHHHHHHHHhhCCCchhhhh
Q 045108 114 EVMIHSKALLLLSCDFATAWNSRKL-IVSNKQLLPILMDELRLSAVVLSHSPKSEQAWS 171 (425)
Q Consensus 114 ~~L~~t~~lLl~npe~~TaWn~Rr~-lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~ 171 (425)
++-.....+|..+|.+...|-+=.. =+... ..++..-.+....|+.||.++-+|.
T Consensus 125 ~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~---ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 125 EMKNIFAECLTKHPLNVDLWIYCCAFELFEI---ANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHhcCCCCceeeeeeccchhhhh---ccHHHHHHHHHhhhccCCCCchHHH
Confidence 3456778899999999999987322 12222 3678888999999999999999995
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.17 E-value=5.8e+02 Score=25.37 Aligned_cols=133 Identities=11% Similarity=-0.003 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch-hhH
Q 045108 149 LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR-EQV 227 (425)
Q Consensus 149 l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~-~~~ 227 (425)
.++-+.-...-|..||.+..-|---.-+...... ....+.-..++.+..|+|-..|.-=.=++-.... .+-
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCccc
Confidence 4555666677788999999999766655555544 5778888999999999999998775555544332 233
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 228 LNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 228 ~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
.+--+..++.+..||.|..+-.|..+-...- + -+.+.+..-+.++...|-|-. ||.
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~-g-------------------~~~~A~~~Wq~lL~~lp~~~~----rr~ 265 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQ-G-------------------DYAEAAAAWQMLLDLLPADDP----RRS 265 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-c-------------------cHHHHHHHHHHHHhcCCCCCc----hHH
Confidence 4556788999999999999988877665431 1 145555555666666665532 344
Q ss_pred HHHHHH
Q 045108 308 LSLYLI 313 (425)
Q Consensus 308 Ll~~~~ 313 (425)
++...+
T Consensus 266 ~ie~~i 271 (287)
T COG4235 266 LIERSI 271 (287)
T ss_pred HHHHHH
Confidence 555433
No 163
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=28.38 E-value=3.3e+02 Score=29.68 Aligned_cols=113 Identities=8% Similarity=-0.090 Sum_probs=73.2
Q ss_pred CchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc-hhhHHHHHHHHHHHHhhcCC
Q 045108 165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT-REQVLNELKQSRNWSGLHVA 243 (425)
Q Consensus 165 Ksy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-~~~~~~EL~~~~~~i~~d~~ 243 (425)
|+|++--+-.|.++.-... -....+..++....+++...|-+-.....|.-++-.-. ..+.-..|..|...++.||+
T Consensus 366 ~~~eL~e~ie~~~~egnd~--ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s 443 (758)
T KOG1310|consen 366 RFYELPENIEKFKTEGNDG--LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS 443 (758)
T ss_pred chhhchHHHHHHHhhccch--hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence 4445544444444432111 01345778888999999999998888887755543211 11345678899999999999
Q ss_pred ChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108 244 DNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGRE 299 (425)
Q Consensus 244 N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne 299 (425)
-+-||.+..-.+..+. .+.+.+++...+.-.+|.|.
T Consensus 444 ~~kah~~la~aL~el~--------------------r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 444 IQKAHFRLARALNELT--------------------RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHHHHHHh--------------------hHHHhhhhHHHHhhcCchhh
Confidence 9999999877776652 24555666666666666544
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=28.31 E-value=5.9e+02 Score=26.07 Aligned_cols=86 Identities=12% Similarity=-0.066 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhCCccHHH--HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 113 IEVMIHSKALLLLSCDFATA--WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~Ta--Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..+++....+..+.|+.+.+ -.+-.++-+......+.+.++.++.++|+.+|||.-+=--..-+.... ..
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~--------g~ 229 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK--------GD 229 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc--------cc
Confidence 45666777777777777653 233333333221235678899999999999999975533333222222 23
Q ss_pred HHHHHHHHHHHHHhcC
Q 045108 191 IERESELVEKIAERSK 206 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~p 206 (425)
++...+..+.+++.||
T Consensus 230 y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 230 YQKAVEALERVLEQNP 245 (389)
T ss_pred hHHHHHHHHHHHHhCh
Confidence 6778888888888887
No 165
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.57 E-value=8.3e+02 Score=26.95 Aligned_cols=113 Identities=9% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCC--Cchhhh-hHHHHHHHHHhhccchhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSP--KSEQAW-SHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~P--Ksy~~W-~hRrwll~~l~~~~~~~~~ 189 (425)
+++++...++|..+|+..+|....=-.+-.. ..++++| .++..|+ ..+... .++-.|.-++..
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~---~ky~~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrlnk------- 94 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQL---DKYEDAL----KLIKKNGALLVINSFFFEKAYCEYRLNK------- 94 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhh---hHHHHHH----HHHHhcchhhhcchhhHHHHHHHHHccc-------
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
+++.|.... ..++-.-.+=.-|..++-+++. +++.++.+..+++-|..++
T Consensus 95 -~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 95 -LDEALKTLK---GLDRLDDKLLELRAQVLYRLER--YDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred -HHHHHHHHh---cccccchHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCchH
No 166
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=23.68 E-value=59 Score=29.16 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCchhhhhHHHH
Q 045108 194 ESELVEKIAERSKMNYRAWNHRCW 217 (425)
Q Consensus 194 EL~~~~~~l~~~pkNY~AW~hR~w 217 (425)
=.+.+++++..+|.+|. |.|++|
T Consensus 169 ~~~~lE~~i~~~P~qw~-w~~~rw 191 (192)
T cd07984 169 LNDALEAAIREHPEQWL-WFHRRW 191 (192)
T ss_pred HHHHHHHHHHhCchhhe-eehhhC
Confidence 33578899999998885 999998
No 167
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=23.31 E-value=2.3e+02 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHH
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRR 174 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRr 174 (425)
..+.+++.+++.+|...|.|.++=.-+.
T Consensus 15 ~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 15 GEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp T-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 3556666666666666666655544433
No 168
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=23.31 E-value=5.8e+02 Score=23.31 Aligned_cols=103 Identities=11% Similarity=-0.113 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHhCCccHHH---HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh---hhhHHHHHHHHHhhcc-
Q 045108 112 AIEVMIHSKALLLLSCDFATA---WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ---AWSHRRWVINMISRNC- 184 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~Ta---Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~---~W~hRrwll~~l~~~~- 184 (425)
..++++..+.++...|....+ ........... ..+..++...+..+..+|+++. +...+....-......
T Consensus 21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~---~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ---GDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 466778888888877765533 33333333333 5789999999999999999884 4555555433322111
Q ss_pred --chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHH
Q 045108 185 --STLQWIIERESELVEKIAERSKMNYRAWNHRCW 217 (425)
Q Consensus 185 --~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~w 217 (425)
..-+....+.+..+...++++|.+-++-.=+..
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 101234677888999999999998877544433
No 169
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=22.39 E-value=1.3e+02 Score=17.89 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhHH
Q 045108 149 LMDELRLSAVVLSHSPKSEQAWSHR 173 (425)
Q Consensus 149 l~~EL~~~~~lL~~~PKsy~~W~hR 173 (425)
.+..-.+.+.++..+|.+..+|..-
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4566678888899999999999643
No 170
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=22.11 E-value=1e+03 Score=25.70 Aligned_cols=95 Identities=8% Similarity=0.070 Sum_probs=66.7
Q ss_pred HHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhh
Q 045108 134 NSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWN 213 (425)
Q Consensus 134 n~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~ 213 (425)
.+........ +.++++|.+++.++...|..+....-+.-|+.+.+. +.+..+..+.+-..|+..=+.=+
T Consensus 198 ~~lAqhyd~~---g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~--------~~~Aa~~~~~Ar~LD~~DRyiNs 266 (517)
T PF12569_consen 198 YFLAQHYDYL---GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD--------LKEAAEAMDEARELDLADRYINS 266 (517)
T ss_pred HHHHHHHHHh---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhCChhhHHHHH
Confidence 5556666655 478999999999999999999999999999999876 67888888888888875422211
Q ss_pred H-HHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108 214 H-RCWLVSFMTREQVLNELKQSRNWSGLHV 242 (425)
Q Consensus 214 h-R~wll~~~~~~~~~~EL~~~~~~i~~d~ 242 (425)
- -..+++ ...+++..+.+..+.+.+.
T Consensus 267 K~aKy~LR---a~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 267 KCAKYLLR---AGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHH---CCCHHHHHHHHHhhcCCCC
Confidence 1 011111 1235666777777766653
No 171
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.56 E-value=1.5e+02 Score=30.39 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHH
Q 045108 75 TQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELR 154 (425)
Q Consensus 75 ~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~ 154 (425)
+.+....|..|.+.=-++++.+ ++...+++++....+|.+||......-.|..++..+. .-..+++
T Consensus 104 ~e~Tee~~eqa~e~k~~A~eAl-----------n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~---kp~~air 169 (377)
T KOG1308|consen 104 AEITEEMMDQANDKKVQASEAL-----------NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLK---KPNAAIR 169 (377)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh-----------cCcchhhhhcccccccccCCchhhhcccccceeeecc---CCchhhh
Confidence 5566667777765544444433 1223577899999999999999999999998888774 5688999
Q ss_pred HHHHHHhhCCCchhhhhHHHHHHHHH
Q 045108 155 LSAVVLSHSPKSEQAWSHRRWVINMI 180 (425)
Q Consensus 155 ~~~~lL~~~PKsy~~W~hRrwll~~l 180 (425)
-|+.++.+||++..-.-.|...=..+
T Consensus 170 D~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 170 DCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred hhhhhhccCcccccccchhhHHHHHh
Confidence 99999999999987776665543333
No 172
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=21.15 E-value=2.6e+02 Score=27.55 Aligned_cols=70 Identities=9% Similarity=0.009 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
..+++.+.+.+.+....|.++.+.+-.-.+..+++. +++.-+++..+++.+|+|..+.....-+-.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~--------~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH--------YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT---------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 457889999999888888888888777776666554 6777788999999999999988887555555554
No 173
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=20.74 E-value=2.1e+02 Score=20.81 Aligned_cols=29 Identities=24% Similarity=0.091 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIV 140 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL 140 (425)
..++++..+.+|.+.|+|.+|-.-+..+=
T Consensus 17 Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 17 YEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 36799999999999999999988776543
No 174
>PRK13683 hypothetical protein; Provisional
Probab=20.34 E-value=85 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHhhcc-CCCCCcc
Q 045108 8 YSEAEALNLLAQLERILDL-DPLIDEV 33 (425)
Q Consensus 8 ~~~~~~~~l~~~~~~~l~~-dp~idei 33 (425)
-..+|++.+|++|-..+.+ +|.+-|+
T Consensus 20 Ke~edA~alYq~I~~am~sg~P~llEL 46 (87)
T PRK13683 20 KEAEDAEALYQQIRQAMRSGNPRLLEL 46 (87)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4578999999999999998 8866443
No 175
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=20.22 E-value=3.5e+02 Score=27.53 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW 175 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw 175 (425)
.+++..+..-+|.+.|.|..+.---+.+..... .+-++=.+..++|++.|-+..+-..|.-
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~---~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHN---EIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh---hhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 478899999999999999999988888777653 5667777888999999999999888864
Done!