Query 045108
Match_columns 425
No_of_seqs 339 out of 1085
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7a_A Farnesyltransferase alp 100.0 3.5E-50 1.2E-54 403.1 24.1 321 23-424 22-349 (349)
2 3dra_A Protein farnesyltransfe 100.0 2.2E-49 7.6E-54 391.7 28.4 282 73-424 23-305 (306)
3 3dss_A Geranylgeranyl transfer 100.0 4.8E-46 1.7E-50 371.1 25.5 285 79-420 26-317 (331)
4 1dce_A Protein (RAB geranylger 100.0 2.1E-36 7.1E-41 322.1 23.8 208 76-311 22-238 (567)
5 3q7a_A Farnesyltransferase alp 100.0 1.1E-34 3.6E-39 290.9 19.1 212 122-384 46-258 (349)
6 3dss_A Geranylgeranyl transfer 100.0 1.1E-33 3.6E-38 282.1 20.8 193 149-381 46-240 (331)
7 1dce_A Protein (RAB geranylger 100.0 1.9E-30 6.4E-35 276.2 21.8 193 150-382 46-240 (567)
8 3dra_A Protein farnesyltransfe 100.0 7.9E-31 2.7E-35 258.9 17.3 202 126-383 29-235 (306)
9 2h6f_A Protein farnesyltransfe 99.9 1.4E-25 4.9E-30 227.5 22.1 273 72-422 86-363 (382)
10 2h6f_A Protein farnesyltransfe 99.8 4.2E-19 1.4E-23 179.9 17.0 199 121-380 88-286 (382)
11 2pl2_A Hypothetical conserved 99.1 1.2E-08 4E-13 93.6 22.2 172 112-309 21-195 (217)
12 3vtx_A MAMA; tetratricopeptide 99.1 5.4E-09 1.8E-13 91.9 19.1 154 112-298 21-174 (184)
13 4gco_A Protein STI-1; structur 99.0 9.4E-09 3.2E-13 86.7 13.1 121 121-254 4-124 (126)
14 4i17_A Hypothetical protein; T 98.9 3E-07 1E-11 83.6 20.5 181 112-305 23-220 (228)
15 3vtx_A MAMA; tetratricopeptide 98.8 3.1E-07 1.1E-11 80.4 19.7 151 127-310 2-152 (184)
16 4gyw_A UDP-N-acetylglucosamine 98.8 1E-07 3.6E-12 103.9 19.8 153 125-310 4-156 (723)
17 2pl2_A Hypothetical conserved 98.8 4E-07 1.4E-11 83.3 20.3 149 127-309 2-161 (217)
18 4abn_A Tetratricopeptide repea 98.8 2.7E-07 9.3E-12 95.0 20.9 180 110-313 117-306 (474)
19 4gyw_A UDP-N-acetylglucosamine 98.8 2.8E-07 9.4E-12 100.5 21.1 134 112-258 25-158 (723)
20 2pzi_A Probable serine/threoni 98.8 4.2E-08 1.4E-12 105.9 13.6 165 111-309 406-578 (681)
21 3urz_A Uncharacterized protein 98.7 3.7E-07 1.3E-11 82.9 16.3 157 111-299 19-191 (208)
22 1w3b_A UDP-N-acetylglucosamine 98.7 8.3E-07 2.8E-11 87.0 19.6 132 112-256 185-316 (388)
23 1w3b_A UDP-N-acetylglucosamine 98.7 1.1E-06 3.8E-11 86.1 20.0 165 112-309 83-247 (388)
24 2q7f_A YRRB protein; TPR, prot 98.7 1.2E-06 4.1E-11 79.1 18.7 164 112-308 73-236 (243)
25 3hym_B Cell division cycle pro 98.7 3E-06 1E-10 79.8 22.0 209 112-358 72-303 (330)
26 4i17_A Hypothetical protein; T 98.7 2.9E-06 9.9E-11 77.0 21.2 152 128-312 5-166 (228)
27 4eqf_A PEX5-related protein; a 98.7 1.2E-06 4.2E-11 84.9 19.4 162 112-306 81-254 (365)
28 3hym_B Cell division cycle pro 98.7 7.7E-06 2.6E-10 77.0 23.9 134 112-257 38-171 (330)
29 4ga2_A E3 SUMO-protein ligase 98.6 1.8E-07 6.2E-12 80.8 11.3 134 111-257 12-146 (150)
30 2vq2_A PILW, putative fimbrial 98.6 4.9E-06 1.7E-10 73.8 21.1 161 112-305 24-188 (225)
31 4eqf_A PEX5-related protein; a 98.6 1.3E-06 4.3E-11 84.9 18.5 204 81-310 80-292 (365)
32 4gco_A Protein STI-1; structur 98.6 3.6E-07 1.2E-11 76.8 12.4 121 158-308 4-124 (126)
33 3ieg_A DNAJ homolog subfamily 98.6 5.8E-06 2E-10 78.5 22.2 165 112-309 19-198 (359)
34 4abn_A Tetratricopeptide repea 98.6 3.8E-06 1.3E-10 86.4 21.7 173 112-310 84-269 (474)
35 2q7f_A YRRB protein; TPR, prot 98.6 2.8E-06 9.6E-11 76.7 18.4 164 113-309 40-203 (243)
36 3ieg_A DNAJ homolog subfamily 98.6 2.4E-05 8.1E-10 74.2 25.0 172 112-308 53-231 (359)
37 2vq2_A PILW, putative fimbrial 98.5 9.7E-06 3.3E-10 71.8 20.2 161 112-305 58-222 (225)
38 3u4t_A TPR repeat-containing p 98.5 3.9E-06 1.3E-10 77.4 17.8 165 111-310 18-187 (272)
39 2vsy_A XCC0866; transferase, g 98.5 2.9E-06 1E-10 88.6 18.8 162 113-304 6-167 (568)
40 2ond_A Cleavage stimulation fa 98.5 5.3E-06 1.8E-10 79.7 19.2 165 113-306 33-210 (308)
41 3gyz_A Chaperone protein IPGC; 98.5 4.6E-07 1.6E-11 79.3 10.2 113 119-244 25-137 (151)
42 2ho1_A Type 4 fimbrial biogene 98.5 1.3E-05 4.5E-10 73.0 20.5 160 113-305 88-249 (252)
43 2xpi_A Anaphase-promoting comp 98.5 3.4E-05 1.2E-09 79.6 26.0 235 112-424 355-596 (597)
44 4ga2_A E3 SUMO-protein ligase 98.5 9.2E-07 3.2E-11 76.3 11.9 134 147-310 11-145 (150)
45 2xpi_A Anaphase-promoting comp 98.5 1.3E-05 4.6E-10 82.6 22.5 167 111-310 388-561 (597)
46 3uq3_A Heat shock protein STI1 98.5 5.2E-06 1.8E-10 75.3 17.2 161 112-305 54-253 (258)
47 1fch_A Peroxisomal targeting s 98.5 2E-05 6.7E-10 75.9 22.2 165 112-310 114-296 (368)
48 2ho1_A Type 4 fimbrial biogene 98.5 1.4E-05 4.7E-10 72.9 20.0 164 113-309 54-219 (252)
49 3as5_A MAMA; tetratricopeptide 98.5 9E-06 3.1E-10 69.5 17.1 156 112-300 24-179 (186)
50 2y4t_A DNAJ homolog subfamily 98.5 1.4E-05 4.9E-10 79.2 21.0 166 113-311 194-375 (450)
51 3cv0_A Peroxisome targeting si 98.5 2.3E-05 8E-10 73.5 21.5 165 112-309 37-216 (327)
52 2vgx_A Chaperone SYCD; alterna 98.5 3.4E-06 1.2E-10 72.7 14.2 121 119-252 10-130 (148)
53 3fp2_A TPR repeat-containing p 98.4 1.2E-05 4.1E-10 81.6 20.1 160 112-305 259-418 (537)
54 3uq3_A Heat shock protein STI1 98.4 1.3E-05 4.3E-10 72.7 18.3 172 112-309 21-217 (258)
55 1fch_A Peroxisomal targeting s 98.4 2E-05 7E-10 75.7 20.8 165 111-309 79-261 (368)
56 3mkr_A Coatomer subunit epsilo 98.4 2.7E-05 9.4E-10 74.7 21.5 163 112-310 81-245 (291)
57 3upv_A Heat shock protein STI1 98.4 5.5E-06 1.9E-10 68.1 14.2 118 127-257 1-124 (126)
58 3cv0_A Peroxisome targeting si 98.4 1.7E-05 5.8E-10 74.5 19.3 170 111-309 70-250 (327)
59 2y4t_A DNAJ homolog subfamily 98.4 2.2E-05 7.5E-10 77.8 20.8 167 111-310 158-340 (450)
60 2ond_A Cleavage stimulation fa 98.4 2.9E-05 9.8E-10 74.5 20.8 162 113-307 81-249 (308)
61 1xnf_A Lipoprotein NLPI; TPR, 98.4 2.4E-05 8.1E-10 71.9 19.5 158 112-303 21-182 (275)
62 2xcb_A PCRH, regulatory protei 98.4 2.9E-06 1E-10 71.9 11.6 124 118-254 6-129 (142)
63 2gw1_A Mitochondrial precursor 98.3 1.4E-05 4.9E-10 80.3 17.9 166 112-310 320-494 (514)
64 4g1t_A Interferon-induced prot 98.3 1.1E-05 3.8E-10 80.8 17.0 191 112-309 154-344 (472)
65 3sz7_A HSC70 cochaperone (SGT) 98.3 1.1E-05 3.7E-10 69.7 14.7 116 126-254 7-122 (164)
66 3qky_A Outer membrane assembly 98.3 0.00013 4.6E-09 67.4 22.0 179 112-305 31-235 (261)
67 2pzi_A Probable serine/threoni 98.3 1.9E-06 6.4E-11 93.0 10.2 131 111-255 448-578 (681)
68 3fp2_A TPR repeat-containing p 98.3 4.3E-05 1.5E-09 77.5 19.6 177 111-310 291-473 (537)
69 3u4t_A TPR repeat-containing p 98.3 1.5E-05 5.3E-10 73.3 14.7 167 112-310 90-266 (272)
70 2gw1_A Mitochondrial precursor 98.2 9.2E-05 3.1E-09 74.3 20.4 165 111-309 252-422 (514)
71 3urz_A Uncharacterized protein 98.2 0.00011 3.7E-09 66.4 18.6 114 131-257 5-134 (208)
72 4g1t_A Interferon-induced prot 98.2 0.00022 7.6E-09 71.2 22.7 171 112-308 110-290 (472)
73 3gyz_A Chaperone protein IPGC; 98.2 7.8E-06 2.7E-10 71.4 10.0 114 156-299 25-138 (151)
74 2vgx_A Chaperone SYCD; alterna 98.1 4.7E-05 1.6E-09 65.4 14.1 123 155-307 9-131 (148)
75 2e2e_A Formate-dependent nitri 98.1 3.1E-05 1.1E-09 67.3 13.1 127 113-250 27-154 (177)
76 1xnf_A Lipoprotein NLPI; TPR, 98.1 0.0006 2E-08 62.3 22.1 128 111-252 58-185 (275)
77 2vyi_A SGTA protein; chaperone 98.1 9.3E-05 3.2E-09 59.3 14.4 121 125-258 7-127 (131)
78 2lni_A Stress-induced-phosphop 98.1 6.5E-05 2.2E-09 60.8 13.3 119 126-257 12-130 (133)
79 1p5q_A FKBP52, FK506-binding p 98.1 4.5E-05 1.5E-09 74.8 14.5 131 115-258 132-277 (336)
80 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.1E-05 1.1E-09 79.3 13.5 132 114-258 252-398 (457)
81 2ooe_A Cleavage stimulation fa 98.1 0.00019 6.4E-09 74.0 19.5 162 113-306 255-432 (530)
82 3mkr_A Coatomer subunit epsilo 98.0 0.00036 1.2E-08 66.8 19.6 158 112-304 117-274 (291)
83 3q49_B STIP1 homology and U bo 98.0 0.00012 4.2E-09 60.1 14.1 119 124-255 3-126 (137)
84 2xcb_A PCRH, regulatory protei 98.0 4.9E-05 1.7E-09 64.1 11.8 124 155-308 6-129 (142)
85 3qky_A Outer membrane assembly 98.0 0.0021 7.1E-08 59.3 23.4 158 123-309 8-195 (261)
86 3as5_A MAMA; tetratricopeptide 98.0 0.00038 1.3E-08 59.1 16.9 146 130-308 8-153 (186)
87 3sz7_A HSC70 cochaperone (SGT) 98.0 6.7E-05 2.3E-09 64.6 12.1 97 112-219 27-123 (164)
88 3upv_A Heat shock protein STI1 98.0 0.00011 3.6E-09 60.2 12.8 98 112-220 20-123 (126)
89 2hr2_A Hypothetical protein; a 98.0 3.8E-05 1.3E-09 68.1 10.5 112 130-254 11-145 (159)
90 1elw_A TPR1-domain of HOP; HOP 98.0 0.00034 1.2E-08 54.9 15.2 112 130-254 4-115 (118)
91 2kck_A TPR repeat; tetratricop 98.0 5E-05 1.7E-09 59.4 9.8 108 125-245 1-111 (112)
92 2e2e_A Formate-dependent nitri 97.9 0.00013 4.6E-09 63.2 13.3 133 147-307 24-157 (177)
93 2dba_A Smooth muscle cell asso 97.9 0.00033 1.1E-08 57.8 15.0 118 124-254 22-142 (148)
94 2vsy_A XCC0866; transferase, g 97.9 0.00017 5.8E-09 75.1 16.2 127 112-251 39-168 (568)
95 1a17_A Serine/threonine protei 97.9 0.00046 1.6E-08 58.1 15.8 114 112-236 29-142 (166)
96 3qou_A Protein YBBN; thioredox 97.9 0.00031 1.1E-08 66.9 16.4 133 112-257 133-267 (287)
97 2fo7_A Synthetic consensus TPR 97.9 0.00049 1.7E-08 54.9 15.3 120 112-244 17-136 (136)
98 2r5s_A Uncharacterized protein 97.9 0.00019 6.6E-09 62.6 13.7 134 112-258 22-157 (176)
99 2fo7_A Synthetic consensus TPR 97.9 0.0014 4.8E-08 52.1 17.7 135 131-298 2-136 (136)
100 3rkv_A Putative peptidylprolyl 97.9 0.00024 8.3E-09 60.9 13.4 116 130-258 11-145 (162)
101 2ooe_A Cleavage stimulation fa 97.9 0.00093 3.2E-08 68.8 20.2 159 113-304 303-468 (530)
102 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.0039 1.3E-07 56.5 22.2 166 112-300 20-219 (225)
103 3qou_A Protein YBBN; thioredox 97.8 0.00059 2E-08 64.9 17.1 154 124-310 111-266 (287)
104 1a17_A Serine/threonine protei 97.8 0.0016 5.4E-08 54.7 17.6 112 130-254 13-124 (166)
105 1hxi_A PEX5, peroxisome target 97.8 0.00026 8.9E-09 58.5 12.2 100 133-245 20-119 (121)
106 1hxi_A PEX5, peroxisome target 97.8 0.00021 7.2E-09 59.1 11.4 87 112-209 33-119 (121)
107 1na0_A Designed protein CTPR3; 97.8 0.0013 4.5E-08 51.8 15.8 118 126-256 4-122 (125)
108 2hr2_A Hypothetical protein; a 97.8 9.2E-05 3.2E-09 65.6 9.5 90 111-211 26-138 (159)
109 2vyi_A SGTA protein; chaperone 97.8 0.00065 2.2E-08 54.2 13.7 101 112-223 28-128 (131)
110 1p5q_A FKBP52, FK506-binding p 97.8 0.00054 1.9E-08 66.9 15.8 102 112-224 163-279 (336)
111 1zu2_A Mitochondrial import re 97.7 0.00022 7.4E-09 63.2 11.1 100 112-211 18-127 (158)
112 2c2l_A CHIP, carboxy terminus 97.7 0.00062 2.1E-08 64.6 15.2 158 112-307 20-177 (281)
113 3q49_B STIP1 homology and U bo 97.7 0.0011 3.6E-08 54.3 14.7 120 162-311 4-128 (137)
114 2lni_A Stress-induced-phosphop 97.7 0.00052 1.8E-08 55.3 12.2 99 112-221 32-130 (133)
115 2r5s_A Uncharacterized protein 97.6 0.00034 1.2E-08 61.0 11.0 151 127-310 3-155 (176)
116 2fbn_A 70 kDa peptidylprolyl i 97.6 0.0014 4.7E-08 58.0 15.0 117 129-258 37-169 (198)
117 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.0018 6.2E-08 57.2 15.7 120 112-247 22-157 (213)
118 2c2l_A CHIP, carboxy terminus 97.6 0.00099 3.4E-08 63.2 14.4 106 127-245 1-106 (281)
119 1wao_1 Serine/threonine protei 97.6 0.00015 5.3E-09 74.7 9.2 115 110-235 20-134 (477)
120 1elw_A TPR1-domain of HOP; HOP 97.6 0.0012 4.2E-08 51.6 12.6 96 112-218 20-115 (118)
121 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00056 1.9E-08 69.9 13.3 134 149-312 250-398 (457)
122 1zu2_A Mitochondrial import re 97.6 0.0015 5.1E-08 57.7 14.1 105 148-252 17-132 (158)
123 4gcn_A Protein STI-1; structur 97.5 0.00056 1.9E-08 56.9 10.2 105 128-243 6-115 (127)
124 3rkv_A Putative peptidylprolyl 97.5 0.00083 2.8E-08 57.4 11.5 98 112-220 27-143 (162)
125 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00012 4.1E-09 71.8 6.8 120 125-257 174-310 (338)
126 2kck_A TPR repeat; tetratricop 97.5 0.0011 3.6E-08 51.5 11.1 108 163-299 2-111 (112)
127 1qqe_A Vesicular transport pro 97.5 0.0033 1.1E-07 59.6 16.1 160 112-304 53-238 (292)
128 2dba_A Smooth muscle cell asso 97.4 0.0034 1.2E-07 51.5 14.0 116 162-307 23-141 (148)
129 1elr_A TPR2A-domain of HOP; HO 97.4 0.004 1.4E-07 49.5 14.0 116 128-257 2-124 (131)
130 1hh8_A P67PHOX, NCF-2, neutrop 97.4 0.0036 1.2E-07 55.2 15.0 133 133-301 9-157 (213)
131 1na0_A Designed protein CTPR3; 97.4 0.0046 1.6E-07 48.5 13.7 98 112-220 25-122 (125)
132 2yhc_A BAMD, UPF0169 lipoprote 97.4 0.016 5.5E-07 52.3 18.9 156 130-299 4-181 (225)
133 2if4_A ATFKBP42; FKBP-like, al 97.4 0.001 3.5E-08 65.1 11.3 122 111-244 194-332 (338)
134 3k9i_A BH0479 protein; putativ 97.3 0.00065 2.2E-08 55.1 8.2 96 113-219 7-105 (117)
135 2fbn_A 70 kDa peptidylprolyl i 97.3 0.0036 1.2E-07 55.2 13.2 101 112-223 54-170 (198)
136 1ihg_A Cyclophilin 40; ppiase 97.3 0.0023 7.7E-08 63.7 13.0 116 130-258 223-354 (370)
137 3k9i_A BH0479 protein; putativ 97.3 0.00048 1.7E-08 55.8 6.7 99 148-256 5-106 (117)
138 2xev_A YBGF; tetratricopeptide 97.2 0.0086 3E-07 48.1 14.0 98 147-254 16-119 (129)
139 2xev_A YBGF; tetratricopeptide 97.2 0.006 2E-07 49.1 13.0 98 112-220 18-121 (129)
140 4gcn_A Protein STI-1; structur 97.2 0.0016 5.3E-08 54.1 9.0 92 112-207 24-115 (127)
141 1wao_1 Serine/threonine protei 97.1 0.0013 4.6E-08 67.6 10.0 98 147-254 20-117 (477)
142 2kat_A Uncharacterized protein 97.0 0.0034 1.2E-07 50.2 9.5 86 114-210 3-88 (115)
143 3edt_B KLC 2, kinesin light ch 97.0 0.014 4.8E-07 52.7 14.5 119 127-258 40-182 (283)
144 1ihg_A Cyclophilin 40; ppiase 97.0 0.011 3.9E-07 58.6 14.5 101 112-223 239-355 (370)
145 2kat_A Uncharacterized protein 96.9 0.012 4.2E-07 46.9 11.8 97 151-257 3-101 (115)
146 1na3_A Designed protein CTPR2; 96.9 0.013 4.4E-07 43.9 10.9 83 128-221 7-89 (91)
147 2l6j_A TPR repeat-containing p 96.8 0.01 3.6E-07 46.1 10.5 69 129-208 3-71 (111)
148 1qqe_A Vesicular transport pro 96.8 0.0071 2.4E-07 57.2 10.8 163 111-300 92-275 (292)
149 3ma5_A Tetratricopeptide repea 96.6 0.0056 1.9E-07 48.3 7.4 73 125-208 2-74 (100)
150 1elr_A TPR2A-domain of HOP; HO 96.5 0.027 9.2E-07 44.5 10.9 97 112-220 20-123 (131)
151 3nf1_A KLC 1, kinesin light ch 96.5 0.061 2.1E-06 49.4 14.9 173 112-310 43-249 (311)
152 3nf1_A KLC 1, kinesin light ch 96.4 0.042 1.4E-06 50.5 13.1 131 112-255 85-248 (311)
153 1na3_A Designed protein CTPR2; 96.3 0.037 1.3E-06 41.3 10.1 83 165-257 7-89 (91)
154 2kc7_A BFR218_protein; tetratr 96.2 0.015 5.3E-07 44.7 7.7 59 148-214 15-74 (99)
155 3ma5_A Tetratricopeptide repea 96.2 0.015 5E-07 45.8 7.5 73 162-244 2-74 (100)
156 3edt_B KLC 2, kinesin light ch 96.2 0.088 3E-06 47.3 13.7 130 112-254 59-221 (283)
157 2l6j_A TPR repeat-containing p 96.0 0.054 1.9E-06 41.9 9.9 83 166-258 3-91 (111)
158 2kc7_A BFR218_protein; tetratr 95.9 0.024 8.1E-07 43.6 7.3 58 112-172 16-74 (99)
159 1ouv_A Conserved hypothetical 95.8 1.1 3.6E-05 40.8 20.5 163 112-306 22-189 (273)
160 4a1s_A PINS, partner of inscut 95.7 0.1 3.6E-06 50.4 12.9 118 112-240 64-212 (411)
161 3sf4_A G-protein-signaling mod 95.7 0.17 6E-06 48.2 14.3 101 112-223 25-141 (406)
162 1ouv_A Conserved hypothetical 95.4 1.1 3.9E-05 40.6 18.2 149 126-307 2-154 (273)
163 3ro2_A PINS homolog, G-protein 95.1 0.38 1.3E-05 44.0 14.0 101 112-223 21-137 (338)
164 2ifu_A Gamma-SNAP; membrane fu 95.1 0.29 1E-05 46.2 13.4 164 112-304 52-233 (307)
165 3ulq_A Response regulator aspa 95.1 0.27 9.3E-06 47.5 13.4 133 112-257 119-276 (383)
166 3sf4_A G-protein-signaling mod 94.7 0.41 1.4E-05 45.6 13.5 120 112-244 163-300 (406)
167 4a1s_A PINS, partner of inscut 94.4 0.64 2.2E-05 44.7 14.2 119 127-258 45-179 (411)
168 3ro2_A PINS homolog, G-protein 94.2 0.39 1.3E-05 43.8 11.6 120 112-244 159-296 (338)
169 4f3v_A ESX-1 secretion system 93.0 0.46 1.6E-05 45.6 10.0 166 112-304 22-246 (282)
170 3ly7_A Transcriptional activat 92.6 1.3 4.4E-05 44.2 12.9 122 112-245 215-344 (372)
171 4e6h_A MRNA 3'-END-processing 92.2 4.2 0.00014 43.6 17.2 164 113-308 326-514 (679)
172 3u3w_A Transcriptional activat 91.8 4.8 0.00017 37.1 15.4 134 112-258 91-249 (293)
173 3bee_A Putative YFRE protein; 91.3 1 3.4E-05 35.3 8.5 74 126-207 2-75 (93)
174 3ly7_A Transcriptional activat 90.8 8 0.00027 38.4 16.3 156 121-300 185-345 (372)
175 3ulq_A Response regulator aspa 90.7 1.6 5.5E-05 41.9 11.2 117 112-241 159-294 (383)
176 2qfc_A PLCR protein; TPR, HTH, 89.8 12 0.00041 34.3 18.6 133 112-257 91-248 (293)
177 3bee_A Putative YFRE protein; 89.3 2.3 8E-05 33.1 9.1 55 109-166 22-76 (93)
178 2ifu_A Gamma-SNAP; membrane fu 88.6 3.7 0.00013 38.4 11.7 124 112-250 92-233 (307)
179 2qfc_A PLCR protein; TPR, HTH, 88.4 5.8 0.0002 36.5 12.8 115 111-238 130-264 (293)
180 3q15_A PSP28, response regulat 88.3 10 0.00035 36.1 14.9 153 112-297 117-293 (378)
181 3u3w_A Transcriptional activat 86.7 3.4 0.00012 38.1 10.0 116 112-239 131-265 (293)
182 3gw4_A Uncharacterized protein 86.1 14 0.00048 30.9 14.0 104 125-241 20-137 (203)
183 3ro3_A PINS homolog, G-protein 84.5 8 0.00028 30.5 10.1 116 112-240 25-158 (164)
184 4f3v_A ESX-1 secretion system 81.8 10 0.00035 36.0 11.0 118 112-243 118-240 (282)
185 3ro3_A PINS homolog, G-protein 80.5 19 0.00065 28.2 12.2 98 131-241 10-119 (164)
186 3rjv_A Putative SEL1 repeat pr 79.7 30 0.001 30.1 14.1 163 114-307 4-170 (212)
187 3gw4_A Uncharacterized protein 76.0 19 0.00066 30.0 10.2 115 113-240 43-176 (203)
188 3e4b_A ALGK; tetratricopeptide 76.0 42 0.0014 33.2 14.1 161 118-309 167-328 (452)
189 3q15_A PSP28, response regulat 76.0 30 0.001 32.8 12.6 119 112-243 157-293 (378)
190 1pc2_A Mitochondria fission pr 74.6 40 0.0014 28.9 11.7 95 159-260 24-120 (152)
191 1pc2_A Mitochondria fission pr 74.2 32 0.0011 29.5 10.9 66 147-220 49-116 (152)
192 2xm6_A Protein corresponding t 70.0 87 0.003 30.8 17.2 164 112-304 275-445 (490)
193 4e6h_A MRNA 3'-END-processing 69.5 99 0.0034 32.8 15.8 131 113-255 360-515 (679)
194 3rjv_A Putative SEL1 repeat pr 62.7 75 0.0026 27.4 16.0 137 112-257 34-174 (212)
195 1hz4_A MALT regulatory protein 62.2 99 0.0034 28.6 15.7 120 112-244 30-168 (373)
196 3o48_A Mitochondria fission 1 54.7 95 0.0032 26.0 10.2 87 127-221 38-124 (134)
197 3mv2_B Coatomer subunit epsilo 52.5 1.6E+02 0.0055 28.0 14.1 157 111-304 115-292 (310)
198 3e4b_A ALGK; tetratricopeptide 49.2 2E+02 0.0068 28.1 16.7 167 111-308 194-363 (452)
199 3u64_A Protein TP_0956; tetrat 47.2 1.8E+02 0.0062 27.7 11.6 126 118-248 140-277 (301)
200 2v5f_A Prolyl 4-hydroxylase su 46.4 86 0.0029 23.8 8.0 65 147-219 19-90 (104)
201 3u64_A Protein TP_0956; tetrat 46.3 92 0.0031 29.8 9.4 89 111-207 178-272 (301)
202 2v5f_A Prolyl 4-hydroxylase su 39.7 1.2E+02 0.0041 22.9 9.5 48 128-178 44-91 (104)
203 1y8m_A FIS1; mitochondria, unk 35.2 2.1E+02 0.007 24.3 10.6 85 126-218 36-120 (144)
204 1hz4_A MALT regulatory protein 34.6 2.7E+02 0.0093 25.5 14.5 95 134-241 18-123 (373)
205 1y8m_A FIS1; mitochondria, unk 33.5 1.4E+02 0.0049 25.3 7.6 67 110-182 56-126 (144)
206 2xm6_A Protein corresponding t 26.5 4.5E+02 0.015 25.4 20.2 168 113-309 240-409 (490)
207 3mv2_B Coatomer subunit epsilo 23.9 4.6E+02 0.016 24.7 13.9 118 111-247 151-289 (310)
208 1nzn_A CGI-135 protein, fissio 22.2 2.7E+02 0.0094 22.8 7.2 86 128-221 34-120 (126)
No 1
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=3.5e-50 Score=403.07 Aligned_cols=321 Identities=17% Similarity=0.171 Sum_probs=236.9
Q ss_pred hhccCCCCCcccccCCcchhhchhhhccCCCCCCCCCCCCceEeecccccchhhhhHHHHHHHHHHHHHHHHhhcCCCCC
Q 045108 23 ILDLDPLIDEVGFIHPSQLATLKEEIGNSLSSEDKDHESTSFWIRDHKLGISTQILIPVYKAAKHAFISALRQYKTPGNF 102 (425)
Q Consensus 23 ~l~~dp~idei~~i~~~~~~~~~~e~~~~~~~~~~~~e~~p~~~~~~~lgi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~ 102 (425)
.++.+|.|++|.+||.. + | | =+|-...+.+.|+.|...|+..++
T Consensus 22 ~~~~~~~w~dv~p~~~~-------~-~-------------~-------~~~~~i~y~~~y~~~~~~~r~~~~-------- 65 (349)
T 3q7a_A 22 PMSQRRSWADVKPIMQD-------D-G-------------P-------NPVVPIMYSEEYKDAMDYFRAIAA-------- 65 (349)
T ss_dssp CTTSCGGGTTCCCCCCC-------C-C-------------S-------SCSSCBCCCHHHHHHHHHHHHHHH--------
T ss_pred CcccCcccCCCcccCCC-------C-C-------------C-------CCeeeeeeCHHHHHHHHHHHHHHH--------
Confidence 45668999999988832 1 1 1 134455668899999999988877
Q ss_pred CCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh
Q 045108 103 SGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR 182 (425)
Q Consensus 103 ~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~ 182 (425)
.+++++++|++|+.+|.+||+||||||+||.+|..++ ..+++||.+++.+|..|||+|++|+||+|++.++..
T Consensus 66 -----~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 66 -----KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp -----TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred -----hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 3578899999999999999999999999999999985 469999999999999999999999999999999822
Q ss_pred ccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchh------hHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTRE------QVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~------~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
. .+.+||++|.++++++|||||||+||+|++.+++.. .+.+|+++++++|+.||+|+|||+||++++.
T Consensus 139 ~------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 139 Q------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp S------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred C------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1 147999999999999999999999999999998652 3569999999999999999999999999998
Q ss_pred HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhh
Q 045108 257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDID 336 (425)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~ 336 (425)
++... .....++++|+++++++|..+|+|+|+|+|+|+|+.........-...+.+.. .+.+
T Consensus 213 ~l~~~-------------~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~--~~~~--- 274 (349)
T 3q7a_A 213 SRPGA-------------ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT--ASKL--- 274 (349)
T ss_dssp TSTTC-------------CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT--C------
T ss_pred hcccc-------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc--cccc---
Confidence 76321 01245799999999999999999999999999999753211000000000000 0000
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhhhhcchhhHHHHHh-hhCCCccchh
Q 045108 337 IDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLK-RSCPDRSSLW 415 (425)
Q Consensus 337 ~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~p~r~~~w 415 (425)
...+..=.+++.+.+ ++......... +.+++.+|++.+.+. | +. ..+..+.+.|+ ++||+|++||
T Consensus 275 -~~~~~~~~~~~~~~~---~~~~~~~~~~~---s~~al~~l~d~~~~~-~---~~---~~a~~~~~~l~~~~dpir~~yw 340 (349)
T 3q7a_A 275 -NPDIETVEAFGFPMP---SDPLPEDTPLP---VPLALEYLADSFIEQ-N---RV---DDAAKVFEKLSSEYDQMRAGYW 340 (349)
T ss_dssp ------------CCCC---C-CCCSSCCSC---CHHHHHHHHHHHHHT-T---CH---HHHHHHHHHHHHTTCGGGHHHH
T ss_pred -cccchhHHHHHHHHH---hcccccccCCC---cHHHHHHHHHHHHhc-C---CH---HHHHHHHHHHHhhhChHHHHHH
Confidence 001111111122222 11100111123 467899999998765 4 11 24777888887 9999999999
Q ss_pred hhhhccCCC
Q 045108 416 DYLVGYHSE 424 (425)
Q Consensus 416 ~~~~~~~~~ 424 (425)
+|+++.+.|
T Consensus 341 ~~~~~~~~~ 349 (349)
T 3q7a_A 341 EFRRRECAE 349 (349)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHhhcC
Confidence 999998765
No 2
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2.2e-49 Score=391.70 Aligned_cols=282 Identities=18% Similarity=0.202 Sum_probs=223.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHH
Q 045108 73 ISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDE 152 (425)
Q Consensus 73 i~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~E 152 (425)
|-...+...|+.++..|++.++ .+++++++|++|+.+|.+||+||||||+||.+|..++ ...+++|
T Consensus 23 ~~~i~y~~~y~~~~~~~~a~~~-------------~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~-~~~~~ee 88 (306)
T 3dra_A 23 ICQILYDEDYKQIMGLLLALMK-------------AEEYSERALHITELGINELASHYTIWIYRFNILKNLP-NRNLYDE 88 (306)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCT-TSCHHHH
T ss_pred ceeeeeCHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcc-cccHHHH
Confidence 3344557889999999998876 4688999999999999999999999999999999873 1389999
Q ss_pred HHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHH
Q 045108 153 LRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELK 232 (425)
Q Consensus 153 L~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~ 232 (425)
|.+++.+|..|||+|++|+||+|+++++...... ...+++||++|+++++.+|||||||+||+|++.+++.....+|++
T Consensus 89 L~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~-~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 89 LDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN-DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 9999999999999999999999999665432100 023689999999999999999999999999999998632349999
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 045108 233 QSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYL 312 (425)
Q Consensus 233 ~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~ 312 (425)
+++++|+.||+|+||||||++++.++... ....++++|+++++++|..+|+|+|+|+||++++...
T Consensus 168 ~~~~~i~~d~~N~sAW~~R~~ll~~l~~~--------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 168 FVDKVIDTDLKNNSAWSHRFFLLFSKKHL--------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF 233 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHSSGGG--------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcccc--------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 99999999999999999999999876321 1235799999999999999999999999999999753
Q ss_pred HHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhh
Q 045108 313 IKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEK 392 (425)
Q Consensus 313 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~ 392 (425)
.+ ..+....|. ..++..++. ... +...+.||.+.+.+. | .
T Consensus 234 ~~------------------~~~~~~~~~-------~~~~~~~~~------~~~---s~~al~~la~~~~~~-~----~- 273 (306)
T 3dra_A 234 DR------------------SITQLEEFS-------LQFVDLEKD------QVT---SSFALETLAKIYTQQ-K----K- 273 (306)
T ss_dssp TC------------------CGGGGHHHH-------HTTEEGGGT------EES---CHHHHHHHHHHHHHT-T----C-
T ss_pred CC------------------ChHHHHHHH-------HHHHhccCC------CCC---CHHHHHHHHHHHHcc-C----C-
Confidence 21 011222332 222222100 012 355789999988755 4 1
Q ss_pred hhcchhhHHHHHh-hhCCCccchhhhhhccCCC
Q 045108 393 LQAGAGDLMRMLK-RSCPDRSSLWDYLVGYHSE 424 (425)
Q Consensus 393 ~~~~~~~~~~~l~-~~~p~r~~~w~~~~~~~~~ 424 (425)
. .++..+.+.|. |+||+|.+||+|+++.+..
T Consensus 274 ~-~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~~ 305 (306)
T 3dra_A 274 Y-NESRTVYDLLKSKYNPIRSNFWDYQISKLTS 305 (306)
T ss_dssp H-HHHHHHHHHHHHTTCGGGHHHHHHHHHTCC-
T ss_pred H-HHHHHHHHHHHhccChHHHHHHHHHHhhccc
Confidence 1 24777888888 7999999999999998863
No 3
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=4.8e-46 Score=371.08 Aligned_cols=285 Identities=19% Similarity=0.270 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCC-------cccHHH
Q 045108 79 IPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQL-------LPILMD 151 (425)
Q Consensus 79 ~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~-------~~~l~~ 151 (425)
++.|+.++..|+..++ .+++++++|++|+.+|.+||+||||||+||.+|..+.. ...+++
T Consensus 26 i~~y~~~~~~~~~~~~-------------~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~ 92 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKA 92 (331)
T ss_dssp HHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence 6789999999988766 46889999999999999999999999999999988740 012789
Q ss_pred HHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHH
Q 045108 152 ELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNEL 231 (425)
Q Consensus 152 EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL 231 (425)
||.+++.+|..|||||++|+||+|++.++... .+++||++|+++++.||||||||+||+||+..++.. +++|+
T Consensus 93 EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~------~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~-~~eel 165 (331)
T 3dss_A 93 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA-PAEEL 165 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-HHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-HHHHH
Confidence 99999999999999999999999999988641 378999999999999999999999999999998752 58999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108 232 KQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY 311 (425)
Q Consensus 232 ~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~ 311 (425)
++++++|+.||+|+|||+||++++.++......+ .. .......+++|++++.++|..+|+|+|+|+|+|+|+..
T Consensus 166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~----~~--~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG----PQ--GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc----cc--cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999874321100 00 01123579999999999999999999999999999965
Q ss_pred HHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhh
Q 045108 312 LIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQE 391 (425)
Q Consensus 312 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~ 391 (425)
... .+. ........+++|++.+.+++..+|++. |. .-+ .-.+...+ +..|. +
T Consensus 240 ~~~---------~~~------~~~~~~~~l~~el~~~~elle~~pd~~--w~-l~~------~~~~~~~~-~~~~~---~ 291 (331)
T 3dss_A 240 GSG---------RCE------LSVEKSTVLQSELESCKELQELEPENK--WC-LLT------IILLMRAL-DPLLY---E 291 (331)
T ss_dssp SSC---------GGG------CCHHHHHHHHHHHHHHHHHHHHCTTCH--HH-HHH------HHHHHHHH-CTTTT---H
T ss_pred ccC---------ccc------cchHHHHHHHHHHHHHHHHHhhCcccc--hH-HHH------HHHHHHhh-ccccc---H
Confidence 211 000 113467889999999999999999772 21 111 11111111 12121 1
Q ss_pred hhhcchhhHHHHHhhhCCCccchhhhhhc
Q 045108 392 KLQAGAGDLMRMLKRSCPDRSSLWDYLVG 420 (425)
Q Consensus 392 ~~~~~~~~~~~~l~~~~p~r~~~w~~~~~ 420 (425)
.....++.-|.+.||.|++||..+..
T Consensus 292 ---~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 292 ---KETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp ---HHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 13566788888999999999987653
No 4
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=2.1e-36 Score=322.12 Aligned_cols=208 Identities=21% Similarity=0.309 Sum_probs=180.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCccc-------
Q 045108 76 QILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPI------- 148 (425)
Q Consensus 76 ~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~------- 148 (425)
..-++.|+.|+..|++.++ .+++++++++.|+.+|.+||++|||||+||.++..++ ..
T Consensus 22 ~~k~~~y~~~~~~~~~~~~-------------~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~--~~~~~~~~~ 86 (567)
T 1dce_A 22 EQKLKLYQSATQAVFQKRQ-------------AGELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESA 86 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcc--cccchhhhh
Confidence 3348899999999998765 3688999999999999999999999999999999875 21
Q ss_pred --HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 149 --LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 149 --l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
+++|+.+++.+|..+||+|++|+||+|++.++... .+++|+++|+++++.||+|||||+||+|++..++. .
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-~ 159 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADERNFHCWDYRRFVAAQAAV-A 159 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-C
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-C
Confidence 89999999999999999999999999999988632 37999999999999999999999999999999983 3
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr 306 (425)
+++|+++++++|+.||+|+|||+||++++.++........ .+ ......+++|++++.++|..+|+|+|+|+|+|
T Consensus 160 ~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~----~~--~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~ 233 (567)
T 1dce_A 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP----QG--RLPENVLLKELELVQNAFFTDPNDQSAWFYHR 233 (567)
T ss_dssp HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS----CC--SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc----cc--cccHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 7899999999999999999999999999998743211000 00 11235799999999999999999999999999
Q ss_pred HHHHH
Q 045108 307 FLSLY 311 (425)
Q Consensus 307 ~Ll~~ 311 (425)
+++..
T Consensus 234 ~ll~~ 238 (567)
T 1dce_A 234 WLLGR 238 (567)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 99965
No 5
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=1.1e-34 Score=290.87 Aligned_cols=212 Identities=16% Similarity=0.246 Sum_probs=181.6
Q ss_pred HHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHH
Q 045108 122 LLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKI 201 (425)
Q Consensus 122 lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~ 201 (425)
-|..+|++..+|++++.++.+.. ..+++|.+++.+|..||++|++|+||++++..++. .+++||++++.+
T Consensus 46 ~i~y~~~y~~~~~~~r~~~~~~e---~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-------~l~eEL~~~~~~ 115 (349)
T 3q7a_A 46 PIMYSEEYKDAMDYFRAIAAKEE---KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-------SLEDELRLMNEF 115 (349)
T ss_dssp CBCCCHHHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHH
T ss_pred eeeeCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-------hHHHHHHHHHHH
Confidence 35788999999999999999885 44789999999999999999999999999998863 379999999999
Q ss_pred HHhcCCchhhhhHHHHHHHhh-chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108 202 AERSKMNYRAWNHRCWLVSFM-TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV 280 (425)
Q Consensus 202 l~~~pkNY~AW~hR~wll~~~-~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (425)
+..+||||.||+||+|++..+ +. ...+||++++++++.||+|++||+||++++.++... ......+
T Consensus 116 L~~nPKny~aW~hR~wlL~~l~~~-~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~------------~~~~~~~ 182 (349)
T 3q7a_A 116 AVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL------------GRISEAQ 182 (349)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHCCS-CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT------------TCCCHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------cccchhh
Confidence 999999999999999999998 51 367999999999999999999999999999986431 0012457
Q ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108 281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360 (425)
Q Consensus 281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~ 360 (425)
+.+||++++++|+.+|+|+|+|+||++++..+.+ . ......+++|+++++++++++|+|++
T Consensus 183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~--------~-----------~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG--------A-----------ETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT--------C-----------CCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc--------c-----------ccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 8999999999999999999999999999865311 0 01246789999999999999999844
Q ss_pred hhHHHhHHHHHHHHHHHhhhhccc
Q 045108 361 EDFQAQAIHSAAYMLWLTKQIPEY 384 (425)
Q Consensus 361 ~~~~~qs~~~~~y~~WL~~~~~~~ 384 (425)
+|.|++||+......
T Consensus 244 ---------aW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 244 ---------AWNYLRGFLKHFSLP 258 (349)
T ss_dssp ---------HHHHHHHHHHHTTCC
T ss_pred ---------HHHHHHHHHHhcCCC
Confidence 788999999875543
No 6
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=1.1e-33 Score=282.07 Aligned_cols=193 Identities=23% Similarity=0.351 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc--chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 149 LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 149 l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
-+++|.+|+.+|..||++||+|+||++++..+.... ......+.+||.+++.++..+||||++|+||+|++..++.+.
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 367899999999999999999999999999887531 123346899999999999999999999999999999998656
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr 306 (425)
+.+|+++++++++.||+|||||+||++++..+.. .+++|+++++++|..+|+|+|+|+||+
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-------------------~~~eel~~~~~~I~~~p~N~SAW~~R~ 186 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-------------------CHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 8999999999999999999999999999987521 268999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhh
Q 045108 307 FLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQI 381 (425)
Q Consensus 307 ~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~ 381 (425)
+++..+.... +.+ .. .......+++|++++.++++++|+| || +|.|++||+...
T Consensus 187 ~ll~~l~~~~-----~~~----~~---~~~~~~~~~eEle~~~~ai~~~P~d-------~S--aW~Y~r~ll~~~ 240 (331)
T 3dss_A 187 CLLPQLHPQP-----DSG----PQ---GRLPENVLLKELELVQNAFFTDPND-------QS--AWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHSCCC------------------CCCHHHHHHHHHHHHHHHHHSTTC-------HH--HHHHHHHHHHSS
T ss_pred HHHHHhhhcc-----ccc----cc---cccchHHHHHHHHHHHHHHHhCCCC-------HH--HHHHHHHHHHhc
Confidence 9998652110 000 00 0112367899999999999999999 44 788999999775
No 7
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.97 E-value=1.9e-30 Score=276.25 Aligned_cols=193 Identities=22% Similarity=0.352 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc--chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhH
Q 045108 150 MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC--STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQV 227 (425)
Q Consensus 150 ~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~--~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~ 227 (425)
++++.+++.+|..||++|++|+||++++.+++... ......+++||++++++++.+||||+||+||+|++.+++...+
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 66699999999999999999999999999987632 1345568999999999999999999999999999999986568
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 228 LNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 228 ~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
++|+++++++++.||+|+|||+||++++..+.. .+++|+++++++|+.+|+|+|+|+||++
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-------------------~~~~el~~~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEELAFTDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence 999999999999999999999999999988521 2689999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhc
Q 045108 308 LSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIP 382 (425)
Q Consensus 308 Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~ 382 (425)
++..+... .+... ...+ ....+++|++++..|++++|+|++ +|.|++||+.+..
T Consensus 187 ll~~l~~~-----~~~~~----~~~~---~~~~~~eel~~~~~ai~~~P~~~s---------aW~y~~~ll~~~~ 240 (567)
T 1dce_A 187 LLPQLHPQ-----PDSGP----QGRL---PENVLLKELELVQNAFFTDPNDQS---------AWFYHRWLLGRAE 240 (567)
T ss_dssp HHHHHSCC-----CCSSS----CCSS---CHHHHHHHHHHHHHHHHHCSSCSH---------HHHHHHHHHSCCC
T ss_pred HHHhhccc-----ccccc----cccc---cHHHHHHHHHHHHHHHhhCCCCcc---------HHHHHHHHHhcCC
Confidence 99765321 00000 0001 235689999999999999999954 7889999997643
No 8
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.97 E-value=7.9e-31 Score=258.95 Aligned_cols=202 Identities=16% Similarity=0.222 Sum_probs=167.4
Q ss_pred CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108 126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (425)
Q Consensus 126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (425)
.+++..+..+-+.++.... ..++.|.+|+.+|..||++||+|++|+.+|..++. ..+++||.+++.++..+
T Consensus 29 ~~~y~~~~~~~~a~~~~~e---~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~------~~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 29 DEDYKQIMGLLLALMKAEE---YSERALHITELGINELASHYTIWIYRFNILKNLPN------RNLYDELDWCEEIALDN 99 (306)
T ss_dssp CHHHHHHHHHHHHHHHTTC---CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT------SCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc------ccHHHHHHHHHHHHHHC
Confidence 3455666777777777663 34789999999999999999999999999998872 13899999999999999
Q ss_pred CCchhhhhHHHHHH----Hhhch-hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108 206 KMNYRAWNHRCWLV----SFMTR-EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV 280 (425)
Q Consensus 206 pkNY~AW~hR~wll----~~~~~-~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (425)
|+||.+|+||+|++ ..++. ..+.+|++++++++..||+|+++|+||++++..+..- .
T Consensus 100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~-------------~----- 161 (306)
T 3dra_A 100 EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH-------------N----- 161 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT-------------T-----
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc-------------C-----
Confidence 99999999999999 44421 2478999999999999999999999999999886210 0
Q ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108 281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360 (425)
Q Consensus 281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~ 360 (425)
..+|+++++++|+.+|+|+|+|+||++++..+.. ......+++|+++++++++++|+|+|
T Consensus 162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~--------------------~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH--------------------LATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG--------------------GCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc--------------------cchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 2489999999999999999999999999865311 01235689999999999999999944
Q ss_pred hhHHHhHHHHHHHHHHHhhhhcc
Q 045108 361 EDFQAQAIHSAAYMLWLTKQIPE 383 (425)
Q Consensus 361 ~~~~~qs~~~~~y~~WL~~~~~~ 383 (425)
+|.|+.||+.....
T Consensus 222 ---------aW~y~~~ll~~~~~ 235 (306)
T 3dra_A 222 ---------TWNYLLGIHERFDR 235 (306)
T ss_dssp ---------HHHHHHHHHHHTTC
T ss_pred ---------HHHHHHHHHHhcCC
Confidence 78899999976543
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=1.4e-25 Score=227.53 Aligned_cols=273 Identities=19% Similarity=0.261 Sum_probs=205.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHH
Q 045108 72 GISTQILIPVYKAAKHAFISALRQYKTPGNFSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMD 151 (425)
Q Consensus 72 gi~~~~l~~ly~~A~~~f~~~l~~y~~~~~~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~ 151 (425)
++....+.+-|..+...+..++.. ....++++..+..+|.+||+++++|++|+.++...+ .++++
T Consensus 86 ~~~ai~~~p~~~~a~~~lg~~~~~-------------~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~e 150 (382)
T 2h6f_A 86 PVVQIIYSDKFRDVYDYFRAVLQR-------------DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHE 150 (382)
T ss_dssp CSSEECCCHHHHHHHHHHHHHHHH-------------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHH
T ss_pred cchhhhCChhhHHHHHHHHHHHHH-------------CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHH
Confidence 344444455566665444443331 234689999999999999999999999999999884 24999
Q ss_pred HHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHH
Q 045108 152 ELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNEL 231 (425)
Q Consensus 152 EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL 231 (425)
++.+++.+|..+|+++.+|+||++++..++. +.+++.++.++++.+|+|+++|.+|+|++..++. +++++
T Consensus 151 Al~~~~~al~l~P~~~~a~~~~g~~~~~~g~--------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl 220 (382)
T 2h6f_A 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNEL 220 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHH
Confidence 9999999999999999999999999999876 5789999999999999999999999999999886 68999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108 232 KQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY 311 (425)
Q Consensus 232 ~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~ 311 (425)
++++++|..||+|.++|++|..++..+.+. . ...++..|++++.++|..+|+|.++|+++++++..
T Consensus 221 ~~~~~al~l~P~~~~a~~~lg~~l~~l~~~------------~--~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 221 QYVDQLLKEDVRNNSVWNQRYFVISNTTGY------------N--DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCS------------C--SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCc------------c--hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 999999999999999999999999875331 0 13457888999999999999999999999888753
Q ss_pred HHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhccccc----c
Q 045108 312 LIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQG----I 387 (425)
Q Consensus 312 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~----~ 387 (425)
. + .... .+-++.+..+ ..+|++.. .+..|.+.+.+. | -
T Consensus 287 ~-------g-------------~~~~----~~a~~~~~~~-~~~p~~~~------------al~~La~~~~~~-~~~~~~ 328 (382)
T 2h6f_A 287 R-------G-------------LSKY----PNLLNQLLDL-QPSHSSPY------------LIAFLVDIYEDM-LENQCD 328 (382)
T ss_dssp T-------C-------------GGGC----HHHHHHHHHH-TTTCCCHH------------HHHHHHHHHHHH-HHTTCS
T ss_pred c-------C-------------ccch----HHHHHHHHHh-ccCCCCHH------------HHHHHHHHHHHH-hccccc
Confidence 1 0 0001 1123334444 56776521 222333332221 1 0
Q ss_pred hhhhhhhcchhhHHHHH-hhhCCCccchhhhhhccC
Q 045108 388 NIQEKLQAGAGDLMRML-KRSCPDRSSLWDYLVGYH 422 (425)
Q Consensus 388 ~~~~~~~~~~~~~~~~l-~~~~p~r~~~w~~~~~~~ 422 (425)
+..+.. ..+..+...+ .+.||+|.+||.++.+.+
T Consensus 329 ~~~~~~-~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDIL-NKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHH-HHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred chHHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 001111 2477888888 699999999999998654
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=4.2e-19 Score=179.93 Aligned_cols=199 Identities=15% Similarity=0.309 Sum_probs=172.6
Q ss_pred HHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108 121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (425)
Q Consensus 121 ~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (425)
++|.++|++..+|++++.++...+ .+++++..++.+|..+|+++++|++|+.++..++. .+++++.++.+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g---~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~-------d~~eAl~~~~~ 157 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDE---RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-------DLHEEMNYITA 157 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc-------CHHHHHHHHHH
Confidence 457899999999999999998874 68999999999999999999999999999998763 16899999999
Q ss_pred HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHH
Q 045108 201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQV 280 (425)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (425)
+++.+|+|+.+|+||++++..++. +.+++..+++.+..||+|.++|.+|.+++..+ + .
T Consensus 158 al~l~P~~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-g-------------------~ 215 (382)
T 2h6f_A 158 IIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEF-K-------------------L 215 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T-------------------C
T ss_pred HHHHCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-C-------------------C
Confidence 999999999999999999999876 68999999999999999999999999999875 2 1
Q ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHHHHHHHhhhccCCCCcc
Q 045108 281 WKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHELCLVHSCSTTIPDANF 360 (425)
Q Consensus 281 ~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d~~ 360 (425)
+++++.+++++|..+|+|.++|++|..++..+.+ . . ....+..|++.++.++..+|++.+
T Consensus 216 ~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~------~-----------~---~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG------Y-----------N---DRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------S-----------C---SHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------c-----------c---hHHHHHHHHHHHHHHHHHCCCCHH
Confidence 4678999999999999999999999887754211 0 0 123478889999999999998733
Q ss_pred hhHHHhHHHHHHHHHHHhhh
Q 045108 361 EDFQAQAIHSAAYMLWLTKQ 380 (425)
Q Consensus 361 ~~~~~qs~~~~~y~~WL~~~ 380 (425)
+|.|+.|+...
T Consensus 276 ---------a~~~l~~ll~~ 286 (382)
T 2h6f_A 276 ---------AWNYLKGILQD 286 (382)
T ss_dssp ---------HHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHc
Confidence 68899998865
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.12 E-value=1.2e-08 Score=93.61 Aligned_cols=172 Identities=7% Similarity=-0.078 Sum_probs=145.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccch---hH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCST---LQ 188 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~---~~ 188 (425)
.++++.....+|..+|++..+|..+..++...+ .+++.+..+..++..+|++..+|..+..++......... ..
T Consensus 21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 97 (217)
T 2pl2_A 21 YDAALTLFERALKENPQDPEALYWLARTQLKLG---LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK 97 (217)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 478999999999999999999999999998874 789999999999999999999999999998877110000 00
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCC
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDN 268 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~ 268 (425)
..+++.+..+.++++.+|.+..+|..++.++...+. +++.+..+++.+..+ .+..+|..+..++... +
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~-g-------- 165 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSALAELYLSM-G-------- 165 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-T--------
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-C--------
Confidence 236889999999999999999999999999988876 789999999999999 8888998888877664 2
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 269 NSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 269 ~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
-+++.+...++++..+|++..+|..+-.+.
T Consensus 166 -----------~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 166 -----------RLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp -----------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 267778889999999999999988765544
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.12 E-value=5.4e-09 Score=91.93 Aligned_cols=154 Identities=6% Similarity=-0.050 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
-+++++....+|.++|++..+|..+..+....+ .+++.+..+..++..+|++..+|.....+...... +
T Consensus 21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 89 (184)
T 3vtx_A 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG---LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE--------K 89 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC--------H
Confidence 478999999999999999999999999998874 78999999999999999999999998888776654 5
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
...+..+.++++.+|.+..+|..++.+...++. +++.++.+++.++.+|.|..+|..+..+...+ +
T Consensus 90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-g----------- 155 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK-G----------- 155 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-----------
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-C-----------
Confidence 788889999999999999999999999988776 78999999999999999999999999888764 2
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCC
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGR 298 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~n 298 (425)
-+++.+.+.+++|+.+|.|
T Consensus 156 --------~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 --------LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp --------CHHHHHHHHHHHHHTTHHH
T ss_pred --------CHHHHHHHHHHHHhCCccC
Confidence 2677888999999999975
No 13
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=9.4e-09 Score=86.71 Aligned_cols=121 Identities=8% Similarity=0.041 Sum_probs=108.1
Q ss_pred HHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108 121 ALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (425)
Q Consensus 121 ~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (425)
.+.-+||+...+++-|+..+... +.+++++...+.++..+|+++.+|..+..++.+++. +.+.+..+.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~ 72 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKK---GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--------FQRALDDCDT 72 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--------HHHHHHHHHH
Confidence 34568999999999999988877 489999999999999999999999999999998876 6899999999
Q ss_pred HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
+++.+|.+..+|..++.+...++. +++.++.+++.++.+|.|..++.....+
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999988876 7899999999999999999988765543
No 14
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=3e-07 Score=83.64 Aligned_cols=181 Identities=6% Similarity=-0.042 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 112 AIEVMIHSKALLLLSC-DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 112 ~~~~L~~t~~lLl~np-e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
.++++.....++.++| .+..+|..+..+....+ .+++++..+..++..+|++..+|..+..+....+.
T Consensus 23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------- 91 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK---KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKN-------- 91 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHccc--------
Confidence 4789999999999999 99999999999888874 79999999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHHhcCCch-------hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHhhcc
Q 045108 191 IERESELVEKIAERSKMNY-------RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA--DNSCFHYHRRLMIWNLEG 261 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY-------~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~--N~SaW~yR~~ll~~l~~~ 261 (425)
+.+.+..+.++++.+|.|. .+|..++.+....+. +++.++.+.+.+..+|. +..+|..+..+....-..
T Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999 557777777766654 78999999999999999 779998888776543111
Q ss_pred c---ccc-CCCCCC---CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 262 F---CHI-QDNNSS---GYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 262 ~---~~~-~~~~~~---~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
. ... ...... +........+++.+.+..+++..+|+|..+....
T Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 170 VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 0 000 000000 0001123456788899999999999998776554
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.85 E-value=3.1e-07 Score=80.45 Aligned_cols=151 Identities=9% Similarity=-0.067 Sum_probs=130.5
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
++..++|+..+.+....+ .+++++..+..+|..+|++..+|..+..+..+++. +++.+..+.+++..+|
T Consensus 2 ge~~~iy~~lG~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKG---DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLDT 70 (184)
T ss_dssp --CHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCc
Confidence 467889999999888774 89999999999999999999999999999888765 6889999999999999
Q ss_pred CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHH
Q 045108 207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD 286 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~ 286 (425)
.+..+|.....+....+. +...+....+.+..+|.+..+|..+..+...+ + -+++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g-------------------~~~~A~~ 128 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSM-G-------------------EHDKAIE 128 (184)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-C-------------------CchhHHH
Confidence 999999999888877665 67889999999999999999999998887664 1 2678889
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHH
Q 045108 287 WNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 287 ~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
..++.+..+|.+..+|+.+-.+..
T Consensus 129 ~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 129 AYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHH
Confidence 999999999999999988755543
No 16
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.84 E-value=1e-07 Score=103.86 Aligned_cols=153 Identities=12% Similarity=-0.023 Sum_probs=108.0
Q ss_pred hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108 125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (425)
Q Consensus 125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (425)
-+|+|..+++..+.++...+ .+++++....++|..+|++..+|+.+..++.++++ +++.+....++++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G---~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--------~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQG---NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--------LQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh
Confidence 35777777777777777663 67777777777777777777777777777776654 56777777777777
Q ss_pred cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHH
Q 045108 205 SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEE 284 (425)
Q Consensus 205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~E 284 (425)
+|.+..+|..++.++..++. +++.++.+++.++.+|.+..+|..+..++..+ + .+++.
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g-------------------~~~eA 130 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDS-G-------------------NIPEA 130 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-------------------CHHHH
Confidence 77777777777777776665 66777777777777777777777777666553 1 15566
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 285 LDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 285 L~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
+++.+++|+.+|++..+|+.+-.++.
T Consensus 131 i~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 131 IASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 77777777777777777776655443
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.83 E-value=4e-07 Score=83.29 Aligned_cols=149 Identities=6% Similarity=-0.127 Sum_probs=127.7
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
|.+..+|..+..++...+ .+++.+..+..++..+|++..+|..+..++.+.+. +.+.+..+.++++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALG---RYDAALTLFERALKENPQDPEALYWLARTQLKLGL--------VNPALENGKTLVARTP 70 (217)
T ss_dssp --CCHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC
Confidence 778889999998888774 78999999999999999999999999999988765 6889999999999999
Q ss_pred CchhhhhHHHHHHHhh-----------chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchh
Q 045108 207 MNYRAWNHRCWLVSFM-----------TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFV 275 (425)
Q Consensus 207 kNY~AW~hR~wll~~~-----------~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~ 275 (425)
.+..+|.....++... +. +++.+..+.+.+..+|.+..+|..+..++... +
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~-g--------------- 132 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGLVYALL-G--------------- 132 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T---------------
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-C---------------
Confidence 9999999999998877 54 78899999999999999999999998887663 1
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 276 ETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 276 ~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
-+++.+...++++..+ .+..+|..+-.+.
T Consensus 133 ----~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 133 ----ERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp ----CHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 2577888889999999 7777777654444
No 18
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.81 E-value=2.7e-07 Score=95.05 Aligned_cols=180 Identities=10% Similarity=0.038 Sum_probs=148.5
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc-chhH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC-STLQ 188 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~-~~~~ 188 (425)
.+.+++++....+|.++|++..+|+....++...+ .+++++..+..++..+|+ +.+|.....++..+.... ....
T Consensus 117 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG---DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence 34488999999999999999999999999988874 799999999999999999 688888888877650000 0001
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh----c--hhhHHHHHHHHHHHHhhcC---CChhHHHHHHHHHHHhh
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFM----T--REQVLNELKQSRNWSGLHV---ADNSCFHYHRRLMIWNL 259 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~----~--~~~~~~EL~~~~~~i~~d~---~N~SaW~yR~~ll~~l~ 259 (425)
..+++.+..+.++++.+|.+..+|.....++... + ...+++.++.+.+.+..+| .+..+|..+..++..+
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~- 271 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE- 271 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc-
Confidence 2378899999999999999999999999998776 1 1247899999999999999 8999999998887764
Q ss_pred ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 045108 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLI 313 (425)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~ 313 (425)
+ -+++.+.+..+++..+|.+..+|..+..++..+.
T Consensus 272 g-------------------~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 272 E-------------------SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 2 2677888999999999999999998877766543
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.79 E-value=2.8e-07 Score=100.54 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++...++|.++|++..+|+.++.++...+ .+++++.....+|..+|++..+|+.+..++..+++ +
T Consensus 25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~--------~ 93 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD--------V 93 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence 478999999999999999999999999999884 79999999999999999999999999999988775 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
++.++.+.++++.+|.+..+|...+.++...+. +++.++.+++.++.+|.+..+|..+..++..+
T Consensus 94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 899999999999999999999999999998876 78999999999999999999999999988775
No 20
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.77 E-value=4.2e-08 Score=105.94 Aligned_cols=165 Identities=4% Similarity=-0.209 Sum_probs=146.5
Q ss_pred chHHHHHHHHHHH--------HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh
Q 045108 111 VAIEVMIHSKALL--------LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR 182 (425)
Q Consensus 111 ~~~~~L~~t~~lL--------l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~ 182 (425)
..+++++....++ ..+|++..+|..+..++...+ .+++++..++.++..+|++..+|.++..++...++
T Consensus 406 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 406 QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG---DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence 3578999999999 999999999999999888774 78999999999999999999999999999888765
Q ss_pred ccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc
Q 045108 183 NCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF 262 (425)
Q Consensus 183 ~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~ 262 (425)
+++.+..+.++++.+|.+..+|..+..+...++. +++ ++.+++.++.+|.|..+|..+..++..+ +
T Consensus 483 --------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~-g-- 548 (681)
T 2pzi_A 483 --------YDSATKHFTEVLDTFPGELAPKLALAATAELAGN--TDE-HKFYQTVWSTNDGVISAAFGLARARSAE-G-- 548 (681)
T ss_dssp --------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-T--
T ss_pred --------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc-C--
Confidence 6899999999999999999999999999988876 567 9999999999999999999999887764 2
Q ss_pred cccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 263 CHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
-+++.+...++++..+|++..+|..+..++
T Consensus 549 -----------------~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 549 -----------------DRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp -----------------CHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred -----------------CHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 267888999999999999999998875544
No 21
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=3.7e-07 Score=82.93 Aligned_cols=157 Identities=9% Similarity=-0.028 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHH----------------HHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHH
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNS----------------RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRR 174 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~----------------Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRr 174 (425)
..++++.....++.++|++..+|.. +..++... ..+++++..+..++..+|++..+|..+.
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg 95 (208)
T 3urz_A 19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN---RNYDKAYLFYKELLQKAPNNVDCLEACA 95 (208)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3578999999999999999999999 88888877 4799999999999999999999999999
Q ss_pred HHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 175 WVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 175 wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
.++...+. +++.+..+.++++.+|.|..+|..++.+....+............+.+..++ +..+|.++...
T Consensus 96 ~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~ 166 (208)
T 3urz_A 96 EMQVCRGQ--------EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLS 166 (208)
T ss_dssp HHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHH
T ss_pred HHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHH
Confidence 99888765 6899999999999999999999999988765543223333444444443222 22244444333
Q ss_pred HHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108 255 MIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGRE 299 (425)
Q Consensus 255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne 299 (425)
... . .-+++.+.+.+++|..+|+++
T Consensus 167 ~~~-~-------------------~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 167 KLF-T-------------------TRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHH-H-------------------HTHHHHHHHHHHHTTTSCCHH
T ss_pred HHH-c-------------------cCHHHHHHHHHHHHHhCCCHH
Confidence 222 1 136788999999999999854
No 22
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=8.3e-07 Score=87.05 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++.++|++..+|..+..++...+ .+++.+..+..++..+|++..+|.....+....+. +
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~ 253 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR---IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------I 253 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC--------H
Confidence 467788888888888888888888887777663 56777777777778888887777777766665543 4
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
++.+..+.++++.+|.+..+|.....++...+. +++.++.+++.+..+|.+..+|..+..+..
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 666667777777777777777766666665554 556666667777777777666666655543
No 23
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=1.1e-06 Score=86.14 Aligned_cols=165 Identities=10% Similarity=0.031 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++.++|++..+|+.+..++...+ .+++++..+..++..+|+++.+|.....++..++. +
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~ 151 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAG---DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR--------L 151 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS---CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC--------H
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------H
Confidence 455666666666666666666666666655553 45666666666666666666666666655554433 4
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
++.+.+..++++.+|.+..+|.....+....+. +...+...++.+..+|.+..+|..+..+.... +
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~----------- 217 (388)
T 1w3b_A 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-R----------- 217 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-T-----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-C-----------
Confidence 666677777777777777777777666665554 56667777777777777777777666555432 1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
.+++.+....+.+..+|.+..+|..+-.+.
T Consensus 218 --------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 218 --------IFDRAVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp --------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 134566777788888888877777654443
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.69 E-value=1.2e-06 Score=79.13 Aligned_cols=164 Identities=10% Similarity=0.017 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|.....+.... ..+++.+.++..++..+|++..+|.....+....+. +
T Consensus 73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~ 141 (243)
T 2q7f_A 73 LERALAFYDKALELDSSAATAYYGAGNVYVVK---EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--------P 141 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--------H
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------H
Confidence 57888999999999999999999988888776 478999999999999999999999888887776554 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
++.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|..+..+.... +
T Consensus 142 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~----------- 207 (243)
T 2q7f_A 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFAAVTEQDPGHADAFYNAGVTYAYK-E----------- 207 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-----------
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-c-----------
Confidence 888899999999999999999888888877665 67888999999999999999888887776653 1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L 308 (425)
-+++.+.+..+++..+|++..+|..+..+
T Consensus 208 --------~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 208 --------NREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp --------CTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred --------CHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 13566778888999999999998876443
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.68 E-value=3e-06 Score=79.84 Aligned_cols=209 Identities=11% Similarity=-0.033 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|.....+....+ ..+++.+..+..++..+|++..+|.....++...+. +
T Consensus 72 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~ 141 (330)
T 3hym_B 72 ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG--HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE--------H 141 (330)
T ss_dssp HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC--SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC--------H
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC--------H
Confidence 466777777777777777777777776666552 256777777777777777777777777766665543 4
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc---------
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF--------- 262 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~--------- 262 (425)
++.+..+.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|..+..+........
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 666666677777777766666666666655543 556666666777777766666666665544321000
Q ss_pred --cccC-CCC---CCCc--------hhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHhhhccCcCCCCC
Q 045108 263 --CHIQ-DNN---SSGY--------FVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLYLIKHIATHLLGVSCQSK 328 (425)
Q Consensus 263 --~~~~-~~~---~~~~--------~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~ 328 (425)
.... .+. .... .-....-+++.+.+..+++..+|.+..+|..+..+..... +
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------~------ 285 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG--------N------ 285 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT--------C------
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc--------c------
Confidence 0000 000 0000 0000123577888999999999999999988755543311 0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhhccCCCC
Q 045108 329 PKASVDIDIDSLMDHELCLVHSCSTTIPDA 358 (425)
Q Consensus 329 ~~~~~~~~~~~~l~~E~~lv~~~~~~~p~d 358 (425)
..+=++..+.++..+|++
T Consensus 286 ------------~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 286 ------------FENAVDYFHTALGLRRDD 303 (330)
T ss_dssp ------------HHHHHHHHHTTTTTCSCC
T ss_pred ------------HHHHHHHHHHHHccCCCc
Confidence 123345577888899977
No 26
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.68 E-value=2.9e-06 Score=76.99 Aligned_cols=152 Identities=4% Similarity=-0.130 Sum_probs=127.3
Q ss_pred ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCC-CchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSP-KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~P-Ksy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
.+..+|..++.+.... ..+++++..+..++..+| ++..+|..+..+...++. +++.+..+.++++.+|
T Consensus 5 ~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 5 TDPNQLKNEGNDALNA---KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------YKEAADYFDIAIKKNY 73 (228)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHhCc
Confidence 3457888888888877 479999999999999999 999999999888887765 6899999999999999
Q ss_pred CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh-------hHHHHHHHHHHHhhccccccCCCCCCCchhhhhH
Q 045108 207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN-------SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQ 279 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~-------SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 279 (425)
.+..+|..++.+...++. +.+.+..+++.+..+|.|. .+|..+..+.... .
T Consensus 74 ~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~--------------------~ 131 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA--------------------G 131 (228)
T ss_dssp SHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT--------------------T
T ss_pred chHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh--------------------c
Confidence 999999999999988776 7899999999999999998 4455555554432 1
Q ss_pred HHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHH
Q 045108 280 VWKEELDWNESLIKRYVG--REALWLHRRFLSLYL 312 (425)
Q Consensus 280 ~~~~EL~~~~~~I~~~p~--neSaW~yrr~Ll~~~ 312 (425)
-+++.+++..++|..+|. +..+|..+..+....
T Consensus 132 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 132 NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 267889999999999999 888988876665443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.67 E-value=1.2e-06 Score=84.90 Aligned_cols=162 Identities=9% Similarity=-0.031 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|+....+....+ .+++++..+..++..+|++..+|.....++...+. +
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~ 149 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENE---NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH--------Q 149 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc--------H
Confidence 467888888888888888888888888887764 68888888888888888888888888877776654 4
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHH----------HHHHHhhchhhHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHhh
Q 045108 192 ERESELVEKIAERSKMNYRAWNHR----------CWLVSFMTREQVLNELKQSRNWSGLHVA--DNSCFHYHRRLMIWNL 259 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR----------~wll~~~~~~~~~~EL~~~~~~i~~d~~--N~SaW~yR~~ll~~l~ 259 (425)
++.+.++.++++.+|.+..+|..+ ..+.... ..+.+.+..+.+.+..+|. +..+|..+..+....
T Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~- 226 (365)
T 4eqf_A 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS- 226 (365)
T ss_dssp HHHHHHHHHHHHHCHHHHCC-------------------CC--HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-
Confidence 566666666666666666665544 2222221 1355566666666666666 555555555444332
Q ss_pred ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306 (425)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr 306 (425)
+ -+++.+.+..+++..+|.+..+|+.+-
T Consensus 227 g-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~ 254 (365)
T 4eqf_A 227 G-------------------EFNRAIDAFNAALTVRPEDYSLWNRLG 254 (365)
T ss_dssp T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 1 144555555666666666666555543
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.65 E-value=7.7e-06 Score=77.02 Aligned_cols=134 Identities=10% Similarity=-0.054 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++....++..+|.+..++.....++... ..+++.+.++..++..+|++..+|.....+....+. .+
T Consensus 38 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~ 107 (330)
T 3hym_B 38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL---NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH-------KN 107 (330)
T ss_dssp HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS-------CH
T ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh-------hH
Confidence 47789999999999999999999888888776 478999999999999999999999999988887662 25
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
++.+.++.++++.+|.+..+|.....+....+. +.+.+..+.+.+..+|.+..+|.++..+...
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESE--HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 788999999999999999999999999887775 7889999999999999999999998777654
No 29
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=1.8e-07 Score=80.82 Aligned_cols=134 Identities=4% Similarity=-0.108 Sum_probs=116.9
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.....++..+|++..++.....+.... ..+++++..+..++..+|+++.+|..+..+....+.
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------- 80 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA---KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-------- 80 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--------
Confidence 357788899999999999999999999888877 489999999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHH-HHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNEL-KQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL-~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
+++.+....++++.+|.+..+|.....++...+. ..+.. .++++.++.+|.|-.+|..+..|+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999998887765 33444 45789999999999999988877654
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.64 E-value=4.9e-06 Score=73.77 Aligned_cols=161 Identities=11% Similarity=-0.038 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHH-hhccchhHHh
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMI-SRNCSTLQWI 190 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l-~~~~~~~~~~ 190 (425)
.++++.....++..+|++..+|.....+....+ .+++.+..+..++..+|.+..+|.....+.... +.
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------- 92 (225)
T 2vq2_A 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLK---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR-------- 92 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC--------
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc--------
Confidence 478999999999999999999999999888774 789999999999999999999998888777665 43
Q ss_pred HHHHHHHHHHHHH--hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCC
Q 045108 191 IERESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDN 268 (425)
Q Consensus 191 ~~~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~ 268 (425)
+++.+.++.++++ .+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|..+..+.... +
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-------- 161 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-G-------- 161 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-T--------
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-C--------
Confidence 6888999999999 778888999999988877765 78889999999999999999998887776653 1
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHhhcC-CCccHHHHH
Q 045108 269 NSSGYFVETYQVWKEELDWNESLIKRYV-GREALWLHR 305 (425)
Q Consensus 269 ~~~~~~~~~~~~~~~EL~~~~~~I~~~p-~neSaW~yr 305 (425)
-+++.+.+..+.+..+| .+..+|...
T Consensus 162 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~~ 188 (225)
T 2vq2_A 162 -----------QLGDADYYFKKYQSRVEVLQADDLLLG 188 (225)
T ss_dssp -----------CHHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 25677888889999999 888877543
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.64 E-value=1.3e-06 Score=84.86 Aligned_cols=204 Identities=9% Similarity=-0.020 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCC----CCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHH
Q 045108 81 VYKAAKHAFISALRQYKTPGN----FSGKSQDDTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLS 156 (425)
Q Consensus 81 ly~~A~~~f~~~l~~y~~~~~----~~~~~~~~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~ 156 (425)
-|..|...|.+++........ ....-......++++.....++.++|++..+|+....++...+ .+++++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~ 156 (365)
T 4eqf_A 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS---HQQDACEAL 156 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc---cHHHHHHHH
Confidence 466777777776653211000 0000000123578999999999999999999999999988874 789999999
Q ss_pred HHHHhhCCCchhhhhHHH---HHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhchhhHHHHH
Q 045108 157 AVVLSHSPKSEQAWSHRR---WVINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWLVSFMTREQVLNEL 231 (425)
Q Consensus 157 ~~lL~~~PKsy~~W~hRr---wll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wll~~~~~~~~~~EL 231 (425)
..++..+|++..+|..+. .+...+..... ....+.+.+.++.++++.+|. +..+|.....+....+. +.+.+
T Consensus 157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~ 233 (365)
T 4eqf_A 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV-DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--FNRAI 233 (365)
T ss_dssp HHHHHHCHHHHCC--------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC--HHHHH
T ss_pred HHHHHhCccchHHHhhhccchHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC--HHHHH
Confidence 999999999999988761 11111111000 013478899999999999999 88999999888877765 78999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 232 KQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 232 ~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
+.+.+.+..+|.+..+|..+..++... + -+++.+.+..+++..+|++..+|..+..+..
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANG-D-------------------RSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 999999999999999999988887663 1 2677888889999999999888888755543
No 32
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=3.6e-07 Score=76.79 Aligned_cols=121 Identities=9% Similarity=-0.013 Sum_probs=104.0
Q ss_pred HHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHH
Q 045108 158 VVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNW 237 (425)
Q Consensus 158 ~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~ 237 (425)
.+..+||+...+|..+...+.+.+. +++.+....++++.+|.+..+|..++.+...++. +.+.++.+++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a 73 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGD--------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--FQRALDDCDTC 73 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--HHHHHHHHHHH
Confidence 4556899999999999988877654 7899999999999999999999999999998876 78999999999
Q ss_pred HhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108 238 SGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 238 i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L 308 (425)
++.+|.+..+|..+..++..+ + -+++.++...++|+.+|+|..++.....+
T Consensus 74 l~~~p~~~~a~~~lg~~~~~~-~-------------------~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 74 IRLDSKFIKGYIRKAACLVAM-R-------------------EWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999888764 2 26788899999999999999988765543
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.62 E-value=5.8e-06 Score=78.50 Aligned_cols=165 Identities=9% Similarity=-0.059 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..+....+ .+++++..+..++..+|.+..+|.....+....+. +
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~ 87 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG---KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK--------L 87 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC--------h
Confidence 478999999999999999999999999888874 78999999999999999999999999888887765 6
Q ss_pred HHHHHHHHHHHHhcC---CchhhhhHHH------------HHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSK---MNYRAWNHRC------------WLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 192 ~~EL~~~~~~l~~~p---kNY~AW~hR~------------wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
++.+..+.++++.+| .+..+|.... .+....+ .+...++.+++.+..+|.+..+|..+..+..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--DYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 889999999999999 8999887763 2332223 4788899999999999999999988887776
Q ss_pred HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
.. + -+++.+....+++..+|.+..+|..+-.+.
T Consensus 166 ~~-~-------------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 166 KE-G-------------------EPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HT-T-------------------CHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HC-C-------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 53 1 156778888899999999998888765544
No 34
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.60 E-value=3.8e-06 Score=86.42 Aligned_cols=173 Identities=12% Similarity=0.033 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccH-HHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPIL-MDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l-~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
.++++.....++...|+...+|..++.++...+ .+ ++++..+..++..+|++..+|.....++...+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------- 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP---DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD-------- 152 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSS---SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------
Confidence 456677777888889999999999999988774 78 999999999999999999999999999888765
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh---------chhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFM---------TREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG 261 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~---------~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~ 261 (425)
+++.+.++.++++.+|. ..+|.....++..+ + .+++.++.+++.+..+|.|..+|..+..++....-.
T Consensus 153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSR--HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhh--hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 68999999999999998 69999999988776 4 478899999999999999999999999888664111
Q ss_pred ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcC---CCccHHHHHHHHHH
Q 045108 262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYV---GREALWLHRRFLSL 310 (425)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p---~neSaW~yrr~Ll~ 310 (425)
. + . ....+++.+.+..+++..+| .+..+|+.+-.+..
T Consensus 230 ~---------~--~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 230 T---------G--Q-NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269 (474)
T ss_dssp T---------T--C-CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH
T ss_pred h---------c--c-ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 0 0 0 11347888999999999999 88888888755553
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.60 E-value=2.8e-06 Score=76.67 Aligned_cols=164 Identities=10% Similarity=-0.018 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
++++.....++..+|++..+|..+..+....+ .+++.+..+..++..+|++..+|.....+....+. ++
T Consensus 40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~ 108 (243)
T 2q7f_A 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVN---ELERALAFYDKALELDSSAATAYYGAGNVYVVKEM--------YK 108 (243)
T ss_dssp --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc--------HH
Confidence 45667778888899999999999999888774 78999999999999999999999998888877654 68
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC
Q 045108 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG 272 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~ 272 (425)
+.+.++.++++.+|.+..+|.....+....+. +++.+..+++.+..+|.+..+|..+..+.... +
T Consensus 109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~------------ 173 (243)
T 2q7f_A 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ--PKLALPYLQRAVELNENDTEARFQFGMCLANE-G------------ 173 (243)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-C------------
Confidence 89999999999999999999999988877765 78899999999999999999998887776553 1
Q ss_pred chhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 273 YFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 273 ~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
.+++.+.+..+++..+|.+..+|..+..+.
T Consensus 174 -------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 174 -------MLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp -------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 145667778888999999988887765444
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.57 E-value=2.4e-05 Score=74.21 Aligned_cols=172 Identities=13% Similarity=0.014 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCC---CchhhhhHHHHHHHHHhhcc----
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSP---KSEQAWSHRRWVINMISRNC---- 184 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~P---Ksy~~W~hRrwll~~l~~~~---- 184 (425)
.++++.....++..+|++..+|.....+....+ .+++++..+..++..+| ++..+|.....+........
T Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQG---KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999888874 78999999999999999 99999877643211000000
Q ss_pred chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccc
Q 045108 185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCH 264 (425)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~ 264 (425)
-.....+.+.+.++.++++.+|.+..+|.....+....+. +...+..+.+.+..+|.+..+|..+..+.... +
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~---- 202 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLKAASKLKSDNTEAFYKISTLYYQL-G---- 202 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHH-T----
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C----
Confidence 0001237889999999999999999999999999888775 78899999999999999999999888777653 1
Q ss_pred cCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108 265 IQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L 308 (425)
-+++.+.+..+++..+|.+..+|.+...+
T Consensus 203 ---------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 203 ---------------DHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp ---------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 15677888889999999999999876543
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.55 E-value=9.7e-06 Score=71.82 Aligned_cols=161 Identities=7% Similarity=-0.051 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHcc-CCcccHHHHHHHHHHHHh--hCCCchhhhhHHHHHHHHHhhccchhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNK-QLLPILMDELRLSAVVLS--HSPKSEQAWSHRRWVINMISRNCSTLQ 188 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~-~~~~~l~~EL~~~~~lL~--~~PKsy~~W~hRrwll~~l~~~~~~~~ 188 (425)
.+++++....++..+|++..+|.....++... + .+++.+..+..++. .+|....+|.....+....+.
T Consensus 58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 128 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN---RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ------ 128 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC------
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC------
Confidence 47899999999999999999999999888776 5 78999999999999 777778999888888877654
Q ss_pred HhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHhhccccccCC
Q 045108 189 WIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV-ADNSCFHYHRRLMIWNLEGFCHIQD 267 (425)
Q Consensus 189 ~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~-~N~SaW~yR~~ll~~l~~~~~~~~~ 267 (425)
+++.+.++.++++.+|.+..+|.....+....+. +.+.+..+++.+..+| .+..+|.....+.... +
T Consensus 129 --~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 196 (225)
T 2vq2_A 129 --FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-G------- 196 (225)
T ss_dssp --HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T-------
T ss_pred --HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-------
Confidence 6888999999999999999999999888877765 7888999999999999 8888875544443331 1
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
..++...+...++..+|++..++.++
T Consensus 197 ------------~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 197 ------------NAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp ------------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 14556677777888899999887765
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.53 E-value=3.9e-06 Score=77.41 Aligned_cols=165 Identities=7% Similarity=-0.093 Sum_probs=139.0
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhh----hhHHHHHHHHHhhccch
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQA----WSHRRWVINMISRNCST 186 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~----W~hRrwll~~l~~~~~~ 186 (425)
..++++.....++..+|++..+|..+..+.... ..+++++..+..++. .|+++.. |..+..+....+.
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~---- 89 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL---AKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ---- 89 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHT---TCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---hhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc----
Confidence 357899999999999999999999999988877 478999999999999 5555544 7788777776654
Q ss_pred hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH-HHHHHhhcccccc
Q 045108 187 LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR-RLMIWNLEGFCHI 265 (425)
Q Consensus 187 ~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~-~ll~~l~~~~~~~ 265 (425)
+++.+..+.++++.+|.+..+|...+.+....+. +++.+..+++.+..+|.+..+|..+. .+....
T Consensus 90 ----~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~------- 156 (272)
T 3u4t_A 90 ----DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK------- 156 (272)
T ss_dssp ----HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-------
T ss_pred ----HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-------
Confidence 6899999999999999999999999999888775 78999999999999999999999988 443321
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 266 QDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
-+++.+....+++..+|.+..+|..+..+..
T Consensus 157 --------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 187 (272)
T 3u4t_A 157 --------------EYVKADSSFVKVLELKPNIYIGYLWRARANA 187 (272)
T ss_dssp --------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 2677888889999999999888888655544
No 39
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.53 E-value=2.9e-06 Score=88.59 Aligned_cols=162 Identities=7% Similarity=-0.121 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
+++++....++..+|++..+|.....++...+ .+++++..+..++..+|++..+|.....++...++ ++
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~ 74 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------HA 74 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HH
Confidence 56788889999999999999999999888774 78999999999999999999999999998887765 68
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCC
Q 045108 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSG 272 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~ 272 (425)
+.+..+.++++.+|.+..+|.....+....+. +++.++.+++.+..+|.+..+|..+..+...+..
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------ 140 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD------------ 140 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc------------
Confidence 99999999999999999999999999888775 7889999999999999999999888877765310
Q ss_pred chhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 273 YFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 273 ~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
..-+++.+++..+++..+|++.++|..
T Consensus 141 -----~g~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 141 -----WRALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp -----CTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred -----cccHHHHHHHHHHHHhcCCcccChHHH
Confidence 012567788888999999999888853
No 40
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.53 E-value=5.3e-06 Score=79.66 Aligned_cols=165 Identities=8% Similarity=-0.025 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHc-------cCCc----ccHHHHHHHHHHHHh-hCCCchhhhhHHHHHHHHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KQLL----PILMDELRLSAVVLS-HSPKSEQAWSHRRWVINMI 180 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~-------~~~~----~~l~~EL~~~~~lL~-~~PKsy~~W~hRrwll~~l 180 (425)
.+++...+.+|..+|.+..+|..+..++.. .+.. ...++.+..+..++. .+|++..+|....-++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678899999999999999999999887753 2200 013788999999999 6999999999988887766
Q ss_pred hhccchhHHhHHHHHHHHHHHHHhcCCchh-hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108 181 SRNCSTLQWIIERESELVEKIAERSKMNYR-AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL 259 (425)
Q Consensus 181 ~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~ 259 (425)
+. +++...+..++++.+|.+.. +|.....++...+. +++......+.+..+|.+.+.|.-...+-....
T Consensus 113 ~~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 113 MK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp TC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred CC--------HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 54 67888999999999999987 99988877766554 678899999999999988888764332221111
Q ss_pred ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306 (425)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr 306 (425)
+ -.++......++|..+|++..+|...-
T Consensus 183 ~-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~ 210 (308)
T 2ond_A 183 K-------------------DKSVAFKIFELGLKKYGDIPEYVLAYI 210 (308)
T ss_dssp C-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 1 145566777888888999999886643
No 41
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.51 E-value=4.6e-07 Score=79.33 Aligned_cols=113 Identities=9% Similarity=-0.081 Sum_probs=103.0
Q ss_pred HHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHH
Q 045108 119 SKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV 198 (425)
Q Consensus 119 t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~ 198 (425)
...++.++|++..+|..++.++...+ .+++++..+..++..+|+++.+|..+..++..++. +++.+..+
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--------~~~Ai~~~ 93 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--------FQQAADLY 93 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------HHHHHHHH
Confidence 35567899999999999999888774 89999999999999999999999999999988775 78999999
Q ss_pred HHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
.++++.+|.|..+|.+.+-++..++. +++.+..+++.+..+|.+
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999998886 789999999999998864
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.51 E-value=1.3e-05 Score=73.05 Aligned_cols=160 Identities=9% Similarity=-0.057 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHh--hCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLS--HSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~--~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
+++++....++..+|++..+|.....++... ..+++.+.++..++. .+|.+..+|.....++...+.
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------- 156 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQ---KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-------- 156 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--------
Confidence 3344444444444444444444444443333 134444444444444 444444444444433333222
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS 270 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~ 270 (425)
+++.+.++.++++.+|.+..+|.....+....+. +...+..+.+.+..+|.+..+|..+..+....
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 222 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYDLFAQGGGQNARSLLLGIRLAKVF------------ 222 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc------------
Confidence 3444455555555555555555444444443332 34445555555555555544444433333221
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
.-+++...+..+++..+|++..++.++
T Consensus 223 --------g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 223 --------EDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp --------TCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred --------cCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 113455666666777777776665543
No 43
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.51 E-value=3.4e-05 Score=79.56 Aligned_cols=235 Identities=9% Similarity=-0.056 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|+....+.... +.+++++.++..++..+|++..+|+....++.+.+. +
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~ 423 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV---NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--------H 423 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence 45666777777777777777777777666665 367788888888888888888888877776666544 5
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
++.++++.++++.+|.+..+|.....+....+. +++.++..++++..+|.|..+|..+..++.+. +
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g----------- 489 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNK-S----------- 489 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-T-----------
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-----------
Confidence 777888888888888888888888777776664 67778888888888888888887777666542 1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhh------cCCC-ccHHHHHHHHHHHHHHHHhhhccCcCCCCCCCCCchhhHHHHHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKR------YVGR-EALWLHRRFLSLYLIKHIATHLLGVSCQSKPKASVDIDIDSLMDHE 344 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~------~p~n-eSaW~yrr~Ll~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~E 344 (425)
.+++.+++..+++.. +|.+ ..+|..+-.+.... ++ .++=
T Consensus 490 --------~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--------g~------------------~~~A 535 (597)
T 2xpi_A 490 --------DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL--------KM------------------YDAA 535 (597)
T ss_dssp --------CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT--------TC------------------HHHH
T ss_pred --------CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh--------cC------------------HHHH
Confidence 256667777777776 4443 34555543333210 10 1222
Q ss_pred HHHHHhhhccCCCCcchhHHHhHHHHHHHHHHHhhhhcccccchhhhhhhcchhhHHHHHhhhCCCccchhhhhhccCCC
Q 045108 345 LCLVHSCSTTIPDANFEDFQAQAIHSAAYMLWLTKQIPEYQGINIQEKLQAGAGDLMRMLKRSCPDRSSLWDYLVGYHSE 424 (425)
Q Consensus 345 ~~lv~~~~~~~p~d~~~~~~~qs~~~~~y~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~r~~~w~~~~~~~~~ 424 (425)
++..+.++..+|++.. ++. .|...+... | +.+ .+...+...-+.+|.....|..+.+...+
T Consensus 536 ~~~~~~~~~~~p~~~~---------~~~---~l~~~~~~~-g-~~~-----~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 536 IDALNQGLLLSTNDAN---------VHT---AIALVYLHK-K-IPG-----LAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHSSCCHH---------HHH---HHHHHHHHT-T-CHH-----HHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCChH---------HHH---HHHHHHHHh-C-CHH-----HHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 3445566667787632 111 222222222 3 111 24455555557789888888877766543
No 44
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.50 E-value=9.2e-07 Score=76.31 Aligned_cols=134 Identities=9% Similarity=-0.047 Sum_probs=113.2
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
.++++.+..+..++..+|+++.+|.+...+..+.+. +++.+..+.++++.+|.|..+|...+.+...++.
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-- 80 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE--------YDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-- 80 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence 467889999999999999999999888887777654 7899999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHH-HHHHHHHhhcCCCccHHHHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEEL-DWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL-~~~~~~I~~~p~neSaW~yr 305 (425)
++..+....+.++.+|.|..+|..+..++..... +.+.. .+.++++..+|+|..+|..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------------~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--------------------TDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--------------------SSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 7899999999999999999999999988776421 11223 35678899999999998877
Q ss_pred HHHHH
Q 045108 306 RFLSL 310 (425)
Q Consensus 306 r~Ll~ 310 (425)
..|+.
T Consensus 141 ~~ll~ 145 (150)
T 4ga2_A 141 EQLLD 145 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 45
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.49 E-value=1.3e-05 Score=82.64 Aligned_cols=167 Identities=7% Similarity=-0.078 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..+++++....++.++|++..+|+....++...+ .+++++.++..++..+|++..+|.....+..+.+.
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 456 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG---EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN-------- 456 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------
Confidence 4578899999999999999999999998888774 78999999999999999999999999888877664
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh------cCCC-hhHHHHHHHHHHHhhcccc
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL------HVAD-NSCFHYHRRLMIWNLEGFC 263 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~------d~~N-~SaW~yR~~ll~~l~~~~~ 263 (425)
+++.+++..++++.+|.+..+|.....++...+. +++.++.+++++.. +|.+ ..+|..+..++... +
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g--- 530 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-K--- 530 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-T---
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-c---
Confidence 6889999999999999999999999999988775 78889999999988 6665 46788777776553 1
Q ss_pred ccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 264 HIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
.+++.+++.++++..+|.+..+|..+..+..
T Consensus 531 ----------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 531 ----------------MYDAAIDALNQGLLLSTNDANVHTAIALVYL 561 (597)
T ss_dssp ----------------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 2677788889999999999999888655543
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.2e-06 Score=75.28 Aligned_cols=161 Identities=6% Similarity=-0.041 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHhCCcc-------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHh-----------------------
Q 045108 112 AIEVMIHSKALLLLSCDF-------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLS----------------------- 161 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~-------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~----------------------- 161 (425)
.++++.....++.++|++ ..+|.....+....+ .+++++..+..++.
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG---DLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence 467888888888888877 688888888777763 67777777777777
Q ss_pred ---hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHH
Q 045108 162 ---HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWS 238 (425)
Q Consensus 162 ---~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i 238 (425)
.+|.+..+|..+..+....+. +++.+..+.++++.+|.+..+|.....+....+. +.+.+..+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al 200 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAI 200 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 666667777777666665543 5778888888888888888888888888777665 677888888888
Q ss_pred hhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhc------CCCccHHHHH
Q 045108 239 GLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRY------VGREALWLHR 305 (425)
Q Consensus 239 ~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~------p~neSaW~yr 305 (425)
..+|.+..+|..+..+.... + -+++.+.+..+++..+ |.|..++...
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~-g-------------------~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAV-K-------------------EYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHH-h-------------------hHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 88888888888777776653 1 1455666677777777 7766666543
No 47
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.49 E-value=2e-05 Score=75.86 Aligned_cols=165 Identities=8% Similarity=-0.060 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHH----------------HH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR----------------RW 175 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hR----------------rw 175 (425)
.++++.....++.++|++..+|..+..+....+ .+++.+..+..++..+|++..+|..+ ..
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNES---LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 467788888888888888888888887777663 67888888888888888888887643 11
Q ss_pred HHHHHhhccchhHHhHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 045108 176 VINMISRNCSTLQWIIERESELVEKIAERSKM--NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRR 253 (425)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk--NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ 253 (425)
++ .. ..+.+.+.++.++++.+|. +..+|.....+....+. +.+.+..+.+.+..+|.+..+|..+..
T Consensus 191 ~~-~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~ 259 (368)
T 1fch_A 191 LL-SD--------SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE--YDKAVDCFTAALSVRPNDYLLWNKLGA 259 (368)
T ss_dssp HH-HH--------HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred Hh-hc--------ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 11 22 2368889999999999999 78889888888877665 788999999999999999999999888
Q ss_pred HHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 254 LMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 254 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
+.... + -+++.+.+..+++..+|.+..+|..+-.+..
T Consensus 260 ~~~~~-g-------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 260 TLANG-N-------------------QSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHc-C-------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 77653 1 2677788889999999999888877655543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.49 E-value=1.4e-05 Score=72.93 Aligned_cols=164 Identities=8% Similarity=-0.048 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
++++.....++..+|++..+|.....+.... ..+++++..+..++..+|.+..+|.....++...+. ++
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------~~ 122 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTE---MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR--------YE 122 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH--------HH
Confidence 5688899999999999999999999888877 478999999999999999999999998888776654 68
Q ss_pred HHHHHHHHHHH--hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108 193 RESELVEKIAE--RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS 270 (425)
Q Consensus 193 ~EL~~~~~~l~--~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~ 270 (425)
+.+.++.++++ .+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|..+..+.... +
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g---------- 189 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFEKSLRLNRNQPSVALEMADLLYKE-R---------- 189 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-T----------
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-C----------
Confidence 88999999999 899999999999988877765 78899999999999999998888777666543 1
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
-+++.+.+..+.+..+|.+..+|..+..+.
T Consensus 190 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 190 ---------EYVPARQYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp ---------CHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 156778888889999999888776554433
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.47 E-value=9e-06 Score=69.46 Aligned_cols=156 Identities=9% Similarity=-0.030 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|.....+.... ..+++.+..+..++..+|.+..+|.....++...+. +
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~ 92 (186)
T 3as5_A 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKT---GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK--------Y 92 (186)
T ss_dssp HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------H
T ss_pred HHHHHHHHHHHHHhCccChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------H
Confidence 46788888889999999999999999888776 478999999999999999999999988888777654 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
++.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|.....+.... +
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~----------- 158 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM-G----------- 158 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-----------
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-C-----------
Confidence 888999999999999999999999988877665 78889999999999999988888777766543 1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREA 300 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neS 300 (425)
-+++.+.+..+.+..+|++..
T Consensus 159 --------~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 159 --------RHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------CHHHHHHHHHHHHHHHHCCCG
T ss_pred --------CHHHHHHHHHHHHHcCCCchh
Confidence 156677788888888887653
No 50
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.46 E-value=1.4e-05 Score=79.23 Aligned_cols=166 Identities=9% Similarity=0.003 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH------------HHHHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW------------VINMI 180 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw------------ll~~l 180 (425)
++++.....++..+|++..+|+.+..+.... ..+++++..+..++..+|.+..+|..... ++.+.
T Consensus 194 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQL---GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp GGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677777777777777777777766665 36778888888888888888877765522 22221
Q ss_pred hhccchhHHhHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 181 SRNCSTLQWIIERESELVEKIAERSKMN----YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 181 ~~~~~~~~~~~~~EL~~~~~~l~~~pkN----Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
..+.+.+.++.++++.+|.+ ..+|.....++...+. +.+.+..+++++..+|.+..+|..+..++.
T Consensus 271 --------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 271 --------GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp --------TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 23678889999999999998 4467777777777665 788999999999999999999999888876
Q ss_pred HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 045108 257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSLY 311 (425)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~~ 311 (425)
.. + -+++.+.+..+++..+|++..+|..+..+...
T Consensus 341 ~~-~-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 341 IE-E-------------------MYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HT-T-------------------CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred Hh-c-------------------CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 53 1 26778889999999999999999888765544
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.46 E-value=2.3e-05 Score=73.53 Aligned_cols=165 Identities=7% Similarity=-0.099 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..+....+ .+++.+..+..++..+|++..+|.....+....+. +
T Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~ 105 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A 105 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC--------H
Confidence 477889999999999999999999998888774 78999999999999999999999988888776654 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHH--------------HH-HHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHR--------------CW-LVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR--------------~w-ll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
++.+..+.++++.+|.+..+|... .- +. .....+.+.+..+.+.+..+|.+..+|..+..+..
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF--AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCT--TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHH--HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 888899999999999998888765 21 12 12234778899999999999999988888877765
Q ss_pred HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
.. + -+++.+.+..+++..+|.+..+|..+-.+.
T Consensus 184 ~~-~-------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 184 LS-N-------------------NYDSAAANLRRAVELRPDDAQLWNKLGATL 216 (327)
T ss_dssp HT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred Hh-c-------------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 53 1 256778888888999999988887664444
No 52
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=3.4e-06 Score=72.68 Aligned_cols=121 Identities=7% Similarity=-0.165 Sum_probs=106.8
Q ss_pred HHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHH
Q 045108 119 SKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV 198 (425)
Q Consensus 119 t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~ 198 (425)
...++.++|++..+|..+..++...+ .+.+++..+..++..+|.++.+|..+..++..++. +++.+..+
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~ 78 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSG---XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--------YDLAIHSY 78 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--------HHHHHHHH
Confidence 56778899999999999998888774 79999999999999999999999999999887765 68999999
Q ss_pred HHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108 199 EKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252 (425)
Q Consensus 199 ~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~ 252 (425)
.++++.+|.+..+|.+.+.++..++. +++.+..+.+.+..+|.|-.....+.
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXGE--LAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 99999999999999999999988876 78899999999999998765544443
No 53
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.44 E-value=1.2e-05 Score=81.59 Aligned_cols=160 Identities=7% Similarity=0.006 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|+ ..+|.....++... ..+.+.+..+..++..+|++..+|..+..+....+. +
T Consensus 259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~ 326 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADK---ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD--------Y 326 (537)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS---SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh---cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC--------H
Confidence 46889999999999999 89999888887766 478999999999999999999999999988887665 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
.+.+..+.++++.+|.+..+|.....+....+. +.+.++.+.+.+..+|.+..+|..+..+.... +
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g----------- 392 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILTDR-G----------- 392 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-T-----------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-C-----------
Confidence 889999999999999999999999999988776 78899999999999999999999988777653 1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
-+++.+.+..+++..+|.+..+|...
T Consensus 393 --------~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 393 --------DFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred --------CHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 15677888888888888888776543
No 54
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.3e-05 Score=72.68 Aligned_cols=172 Identities=10% Similarity=-0.064 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc-------hhhhhHHHHHHHHHhhcc
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS-------EQAWSHRRWVINMISRNC 184 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs-------y~~W~hRrwll~~l~~~~ 184 (425)
.++++.....++..+ .+..+|..+..+....+ .+++.+..+..++..+|++ ..+|.....+....+...
T Consensus 21 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 21 FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG---EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence 578999999999999 99999999999988874 7899999999999999887 688888877777655421
Q ss_pred ch------------------hHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChh
Q 045108 185 ST------------------LQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNS 246 (425)
Q Consensus 185 ~~------------------~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S 246 (425)
.. ....+++.+..+.++++.+|.+..+|.....+....+. +...+..+++.+..+|.+..
T Consensus 97 ~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~ 174 (258)
T 3uq3_A 97 KTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRAPEDAR 174 (258)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcccHH
Confidence 10 01223444455666666899999999999998877765 78999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 247 CFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 247 aW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
+|..+..+.... + -+++.+.+..+.+..+|.+..+|..+..+.
T Consensus 175 ~~~~l~~~~~~~-~-------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 175 GYSNRAAALAKL-M-------------------SFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-C-------------------CHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999988777653 1 267788889999999999988887765444
No 55
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.44 E-value=2e-05 Score=75.73 Aligned_cols=165 Identities=10% Similarity=-0.033 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.....++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....+....+.
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-------- 147 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMALAVSFTNESL-------- 147 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------
Confidence 3478999999999999999999999999888874 78999999999999999999999999988887654
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHH----------------HHHHHhhchhhHHHHHHHHHHHHhhcCC--ChhHHHHHH
Q 045108 191 IERESELVEKIAERSKMNYRAWNHR----------------CWLVSFMTREQVLNELKQSRNWSGLHVA--DNSCFHYHR 252 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR----------------~wll~~~~~~~~~~EL~~~~~~i~~d~~--N~SaW~yR~ 252 (425)
+.+.+.++.++++.+|.+..+|..+ ..++ .. ..+.+.+..+.+.+..+|. +..+|..+.
T Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD--SLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH--HHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc--ccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 6889999999999999999999743 2222 22 2478889999999999999 677777776
Q ss_pred HHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 253 RLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 253 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
.+.... + -+++.+.+..+++..+|.+..+|+.+-.+.
T Consensus 225 ~~~~~~-g-------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 225 VLFNLS-G-------------------EYDKAVDCFTAALSVRPNDYLLWNKLGATL 261 (368)
T ss_dssp HHHHHT-T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHc-C-------------------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 666542 1 266778888999999999988887765444
No 56
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.43 E-value=2.7e-05 Score=74.70 Aligned_cols=163 Identities=9% Similarity=0.002 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHh--CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 112 AIEVMIHSKALLLL--SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~--npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
.+++++..+.++.. +|++.+++...+.++...+ .+++++..+.. |.+..++..+..++.+++.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g---~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~------- 145 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ---NPDAALRTLHQ-----GDSLECMAMTVQILLKLDR------- 145 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT---CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC---CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC-------
Confidence 47888888888876 6999999999999888774 78999988876 9999999999988888765
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN 269 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~ 269 (425)
+++.+..+.++++.+|.+...-....|+--..+...+++.+...++++..+|.+..+|+.+..++..+ +
T Consensus 146 -~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g--------- 214 (291)
T 3mkr_A 146 -LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-G--------- 214 (291)
T ss_dssp -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-T---------
T ss_pred -HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C---------
Confidence 58889999999999999865444444544333334588999999999999999999999988887664 2
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 270 SSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
-+++......+++..+|.|..+|.++-.+..
T Consensus 215 ----------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 215 ----------RWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp ----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2677888889999999999999988755543
No 57
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=5.5e-06 Score=68.08 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=101.6
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
|+...+|..++..+... ..+++++..++.++..+|++..+|..+..+...++. +.+.+..+.++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTK---SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS--------FPEAIADCNKAIEKDP 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence 45667888888877776 478999999999999999999999999999888765 6889999999999999
Q ss_pred CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc------CCChhHHHHHHHHHHH
Q 045108 207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH------VADNSCFHYHRRLMIW 257 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d------~~N~SaW~yR~~ll~~ 257 (425)
.+..+|..++.+...++. +.+.+..+.+.+..+ |.|..++.....+..+
T Consensus 70 ~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999988776 788899999999999 8888887776665543
No 58
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.42 E-value=1.7e-05 Score=74.49 Aligned_cols=170 Identities=11% Similarity=-0.072 Sum_probs=134.4
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHH----------HH-
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVI----------NM- 179 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll----------~~- 179 (425)
..++++.....++..+|++..+|.....+.... ..+++++..+..++..+|++..+|....-.+ ..
T Consensus 70 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 70 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNE---HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 357899999999999999999999999888777 4789999999999999999999887761111 11
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNL 259 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~ 259 (425)
+.. ....+.+.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+..+|..+..+....
T Consensus 147 ~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 219 (327)
T 3cv0_A 147 FFA----APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN--YDSAAANLRRAVELRPDDAQLWNKLGATLANG- 219 (327)
T ss_dssp CTT----SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred HHH----HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-
Confidence 000 02346888999999999999999999999998887765 78899999999999999999999888777653
Q ss_pred ccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 260 EGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
+ -+++.+.+..+++..+|.+..+|..+-.+.
T Consensus 220 ~-------------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 220 N-------------------RPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp T-------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred C-------------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 1 256778888999999999988887754443
No 59
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.41 E-value=2.2e-05 Score=77.85 Aligned_cols=167 Identities=7% Similarity=-0.117 Sum_probs=134.1
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.....++..+|.+..+|+.+..++...+ .+++++..+..++..+|++..+|.....+....+.
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 226 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-------- 226 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence 3467889999999999999999999999888774 67899999999999999999999999888877654
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHH------------HHHHHhhchhhHHHHHHHHHHHHhhcCCChh----HHHHHHHH
Q 045108 191 IERESELVEKIAERSKMNYRAWNHR------------CWLVSFMTREQVLNELKQSRNWSGLHVADNS----CFHYHRRL 254 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR------------~wll~~~~~~~~~~EL~~~~~~i~~d~~N~S----aW~yR~~l 254 (425)
+++.+.++.++++.+|.+-.+|... ..+....+ .+.+.+..+.+++..+|.|.. +|..+..+
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG--RYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 6889999999999999999988765 33333333 378889999999999999855 33333333
Q ss_pred HHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 255 MIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 255 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
+... ..+++.+.++.+++..+|.+..+|..+-.+..
T Consensus 305 ~~~~--------------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 305 FSKD--------------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHTT--------------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHC--------------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3221 12677889999999999999999988655543
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.40 E-value=2.9e-05 Score=74.47 Aligned_cols=162 Identities=6% Similarity=-0.116 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHH-hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHHHhhccchhHHh
Q 045108 113 IEVMIHSKALLL-LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ-AWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 113 ~~~L~~t~~lLl-~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~-~W~hRrwll~~l~~~~~~~~~~ 190 (425)
++++...+.+|. ++|++..+|.....++...+ .+++.......++..+|+++. +|.....++.+.+.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------- 149 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-------- 149 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--------
Confidence 789999999999 79999999999999888774 789999999999999999998 99998887776554
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHh-hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSF-MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN 269 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~-~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~ 269 (425)
+++...++.++++.+|.++++|.....+-.. .+ .........++.++.+|.+...|.....++... +
T Consensus 150 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g--------- 217 (308)
T 2ond_A 150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-N--------- 217 (308)
T ss_dssp HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C---------
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-C---------
Confidence 5788899999999999999998755544322 23 367889999999999999999997776655432 1
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhh---cCC-CccHHHHHHH
Q 045108 270 SSGYFVETYQVWKEELDWNESLIKR---YVG-REALWLHRRF 307 (425)
Q Consensus 270 ~~~~~~~~~~~~~~EL~~~~~~I~~---~p~-neSaW~yrr~ 307 (425)
-.++......+++.. .|+ +..+|...-.
T Consensus 218 ----------~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 218 ----------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp ----------CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 145556667777875 553 7778876433
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.40 E-value=2.4e-05 Score=71.86 Aligned_cols=158 Identities=8% Similarity=-0.052 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHHh----CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchh
Q 045108 112 AIEVMIHSKALLLL----SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 112 ~~~~L~~t~~lLl~----npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~ 187 (425)
.++++.....++.. +|.+..+|..+..+....+ .+++++..+..++..+|++..+|.....+....+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----- 92 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN----- 92 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC-----
Confidence 35555666666655 3567777887777777663 67888888888888888888888877777766544
Q ss_pred HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD 267 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~ 267 (425)
+++.+.++.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+.......... ...
T Consensus 93 ---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------- 157 (275)
T 1xnf_A 93 ---FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK--------- 157 (275)
T ss_dssp ---HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------
T ss_pred ---HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------
Confidence 5777888888888888888888888887777665 6777888888888888776444333222 110
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHH
Q 045108 268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREALWL 303 (425)
Q Consensus 268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~ 303 (425)
.-+++.+.+..+.+...|.+...|.
T Consensus 158 -----------~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (275)
T 1xnf_A 158 -----------LDEKQAKEVLKQHFEKSDKEQWGWN 182 (275)
T ss_dssp -----------HCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred -----------cCHHHHHHHHHHHHhcCCcchHHHH
Confidence 1245666667777777777766654
No 62
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=2.9e-06 Score=71.86 Aligned_cols=124 Identities=10% Similarity=-0.160 Sum_probs=105.8
Q ss_pred HHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108 118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (425)
Q Consensus 118 ~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (425)
....++.++|++..++..+...+... ..+.+++..+..++..+|+++.+|.....++...+. +++.+..
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~ 74 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQA---GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--------YEQALQS 74 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--------HHHHHHH
Confidence 34556788999999999998888776 479999999999999999999999999999887765 6899999
Q ss_pred HHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 198 VEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
+.++++.+|.|..+|.+...++..++. +++.+..+++.+..+|.|-..+..+..+
T Consensus 75 ~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 75 YSYGALMDINEPRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999988876 7888999999999999887665544433
No 63
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.4e-05 Score=80.25 Aligned_cols=166 Identities=8% Similarity=-0.081 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|.....++... ..+++.+..+..++..+|.+..+|.....+....+. +
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~ 388 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRE---NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND--------F 388 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--------H
Confidence 34566667777777777777777666666555 467888888888888888888888888777776654 6
Q ss_pred HHHHHHHHHHHHhcCCchh------hhhHHHHHHHh---hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccc
Q 045108 192 ERESELVEKIAERSKMNYR------AWNHRCWLVSF---MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGF 262 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~---~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~ 262 (425)
++.+..+.++++.+|.+.. +|.....+... .+. +...+..+.+.+..+|.+..+|..+..+.... +
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g-- 463 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN--FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ-E-- 463 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T--
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-c--
Confidence 7888999999999999865 89999888877 665 78889999999999999999998888776653 1
Q ss_pred cccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 263 CHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
-+++.+.+..+++..+|++..+|....++..
T Consensus 464 -----------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 464 -----------------DIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp -----------------CHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 2677788899999999999999988765543
No 64
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.35 E-value=1.1e-05 Score=80.85 Aligned_cols=191 Identities=5% Similarity=-0.149 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.+...+|.++|++..++.....+...+......++.+..+..++..+|++..++......+..+.... ..+
T Consensus 154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~----~~~ 229 (472)
T 4g1t_A 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEG----EEE 229 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhh----hHH
Confidence 4689999999999999999999888776543321134567788899999999999999998887776654321 235
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
.+.+.++.++++.+|.+..+|...+.+....+. +...+....+.++.+|.+..+++.+..+............ ....
T Consensus 230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~-~~~~ 306 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR-ENGM 306 (472)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH-HHHH
Confidence 677889999999999999999999999888776 7889999999999999999999887766543211100000 0000
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
+.........+..+....+++..+|.+..+|..+-.+.
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 01122234567778888899999999999998765443
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=1.1e-05 Score=69.69 Aligned_cols=116 Identities=12% Similarity=-0.037 Sum_probs=103.2
Q ss_pred CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108 126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (425)
Q Consensus 126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (425)
+++...+|..+..++... ..+++++..+..++..+|++..+|..+..++..++. +.+.+..+.++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMAR---KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD 75 (164)
T ss_dssp CCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC
Confidence 456677888888888776 479999999999999999999999999999888765 689999999999999
Q ss_pred CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
|.+..+|..+..+...++. +.+.+..+.+.+..+|.|..+|..+...
T Consensus 76 p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999988876 7899999999999999999998777654
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.29 E-value=0.00013 Score=67.44 Aligned_cols=179 Identities=10% Similarity=-0.097 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccc
Q 045108 112 AIEVMIHSKALLLLSCDF---ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCS 185 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~---~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~ 185 (425)
.++++.....++..+|++ ..+|..+..+....+ .+.+++..+..++..+|++ ..++..+..+.........
T Consensus 31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK---EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 478999999999999999 899999999988874 8999999999999998865 4567777777665110000
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCchhhh-----------------hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh---
Q 045108 186 TLQWIIERESELVEKIAERSKMNYRAW-----------------NHRCWLVSFMTREQVLNELKQSRNWSGLHVADN--- 245 (425)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW-----------------~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~--- 245 (425)
.-...+.+.+..+.++++.+|.+-.++ ...+.+....+. +...+..+++.+..+|.+.
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~ 185 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWAD 185 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHH
T ss_pred ccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchHH
Confidence 001237899999999999999998887 455666555554 7899999999999999854
Q ss_pred hHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 246 SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 246 SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
.++..+..+...+-.. .. ......-+++.+....+++..+|++..+..-+
T Consensus 186 ~a~~~l~~~~~~~g~~-------~~---~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQ-------SV---RARQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp HHHHHHHHHHHHHHHT-------SC---GGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHhccc-------ch---hhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4666666665543110 00 00012357788999999999999987655443
No 67
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.28 E-value=1.9e-06 Score=92.96 Aligned_cols=131 Identities=5% Similarity=-0.196 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..+++++....++.++|++..+|+.++.++...+ .+++++..+..++..+|+++.+|..+..++.++++
T Consensus 448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-------- 516 (681)
T 2pzi_A 448 DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG---DYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-------- 516 (681)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------
Confidence 3578999999999999999999999999988874 79999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM 255 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll 255 (425)
+++ +..+.++++.+|.+..+|..+..++..++. +++.++.+++.+..+|.+..+|..+..++
T Consensus 517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 356 889999999999999999999999988876 78999999999999999999998888775
No 68
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.27 E-value=4.3e-05 Score=77.48 Aligned_cols=177 Identities=7% Similarity=-0.072 Sum_probs=141.0
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.....++..+|++..+|..+..+....+ .+++++..+..++..+|++..+|.....+....+.
T Consensus 291 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-------- 359 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ---DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK-------- 359 (537)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Confidence 4578999999999999999999999999988774 78999999999999999999999999988887765
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH------HHHHHhhccccc
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR------RLMIWNLEGFCH 264 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~------~ll~~l~~~~~~ 264 (425)
+++.+.++.++++.+|.+..+|.....+....+. +.+.+..+.+.+..+|.+...|.... .++......
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--- 434 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ--- 434 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc---
Confidence 6889999999999999999999999999988775 78889999999998887766554332 233221000
Q ss_pred cCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 265 IQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
+.......-+++.+.+..+++..+|.+..+|..+-.+..
T Consensus 435 -------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 435 -------DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -------cchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 000000134778899999999999999988877655443
No 69
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.26 E-value=1.5e-05 Score=73.31 Aligned_cols=167 Identities=6% Similarity=-0.134 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHH-HHHHHHhhccchhHHh
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRR-WVINMISRNCSTLQWI 190 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRr-wll~~l~~~~~~~~~~ 190 (425)
.++++.....++.++|++..+|.....+....+ .+++++..+..++..+|.+..+|..+. .+.... .
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---------~ 157 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG---NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---------E 157 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT---CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc---CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH---------H
Confidence 478889999999999999999999998888774 789999999999999999999998888 444432 2
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh-HHHHHHHHHHHHhhc---CCCh-----hHHHHHHHHHHHhhcc
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ-VLNELKQSRNWSGLH---VADN-----SCFHYHRRLMIWNLEG 261 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~-~~~EL~~~~~~i~~d---~~N~-----SaW~yR~~ll~~l~~~ 261 (425)
+++.+..+.++++.+|.+..+|..+..+...++... +...+...++.+... +... .+|.+...+....
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 234 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN--- 234 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc---
Confidence 688889999999999999999999988887765411 223444555555443 4321 3555554444332
Q ss_pred ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q 045108 262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLSL 310 (425)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll~ 310 (425)
.-+++.+++..+++..+|+|..+|-....+..
T Consensus 235 -----------------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 235 -----------------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp -----------------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred -----------------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 12678899999999999999999887665543
No 70
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.22 E-value=9.2e-05 Score=74.27 Aligned_cols=165 Identities=8% Similarity=0.006 Sum_probs=138.6
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.....++..+|+ ..+|..+..+....+ .+.+.+..+..++..+|++..+|..+..+....+.
T Consensus 252 ~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 319 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN---DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN-------- 319 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS---CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC--------
T ss_pred CHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC---CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC--------
Confidence 357889999999999999 999999998888774 67889999999999999999999999888887665
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS 270 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~ 270 (425)
+++.+..+.++++.+|.+..+|.....+....+. +...+..+.+.+..+|.+..+|..+..+.... +
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~---------- 386 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FDDCETLFSEAKRKFPEAPEVPNFFAEILTDK-N---------- 386 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT-T----------
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-C----------
Confidence 5788899999999999999999999888877665 78899999999999999999999888777653 1
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhcCCCcc------HHHHHHHHH
Q 045108 271 SGYFVETYQVWKEELDWNESLIKRYVGREA------LWLHRRFLS 309 (425)
Q Consensus 271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neS------aW~yrr~Ll 309 (425)
.+++.+.+..+++..+|.+.. +|..+..+.
T Consensus 387 ---------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 387 ---------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 256778888888888998876 666654433
No 71
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.20 E-value=0.00011 Score=66.41 Aligned_cols=114 Identities=3% Similarity=-0.064 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH----------------HHHHHHHHhhccchhHHhHHHH
Q 045108 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH----------------RRWVINMISRNCSTLQWIIERE 194 (425)
Q Consensus 131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h----------------Rrwll~~l~~~~~~~~~~~~~E 194 (425)
..+..+...+... ..+.+++..+..++..+|++..+|.+ +..++...+. +++.
T Consensus 5 ~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A 73 (208)
T 3urz_A 5 DEMLQKVSAAIEA---GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDKA 73 (208)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHHH
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHHH
Confidence 3444555555555 47899999999999999999999999 7777776654 6899
Q ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 195 SELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 195 L~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
+..+.++++.+|.+..+|..++.+....+. +++.+..+++.+..+|.|..+|..+..++..
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988776 7899999999999999999999999877643
No 72
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.20 E-value=0.00022 Score=71.23 Aligned_cols=171 Identities=6% Similarity=-0.133 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108 112 AIEVMIHSKALLLLS--------CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN 183 (425)
Q Consensus 112 ~~~~L~~t~~lLl~n--------pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~ 183 (425)
.++++....+++.++ +++..+.+.++..+...+ ...+++++.+...++..+|+++.+|.....+..++...
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG-GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 467788888888774 355677777776665543 34689999999999999999999998888777666543
Q ss_pred cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch--hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhcc
Q 045108 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR--EQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEG 261 (425)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~--~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~ 261 (425)
.. .++.++.+.++++.+|.+..++......+..+.. ....+.+..+++.+..+|.+..+|..+..+.... +
T Consensus 189 ~~-----~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~-~- 261 (472)
T 4g1t_A 189 PP-----SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK-D- 261 (472)
T ss_dssp CC-----CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-T-
T ss_pred hH-----HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc-C-
Confidence 21 2456788899999999999999998887766543 2356778899999999999999999988877653 1
Q ss_pred ccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108 262 FCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L 308 (425)
.+.+.+.+..+++..+|.+..+|+.+..+
T Consensus 262 ------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 262 ------------------EPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp ------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 26777888899999999999988876444
No 73
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.18 E-value=7.8e-06 Score=71.37 Aligned_cols=114 Identities=7% Similarity=-0.111 Sum_probs=100.5
Q ss_pred HHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHH
Q 045108 156 SAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSR 235 (425)
Q Consensus 156 ~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~ 235 (425)
+..++..+|++..+|.....++.+.+. +++.+.++.++++.+|.|..+|...+.++..++. +++.+..++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~Ai~~~~ 94 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGR--------IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ--FQQAADLYA 94 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence 356778899999999999999887765 7899999999999999999999999999988876 789999999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108 236 NWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGRE 299 (425)
Q Consensus 236 ~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne 299 (425)
+.+..+|.|..+|.++..++..+ + -+++.+....+++..+|+..
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~l-g-------------------~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRL-K-------------------APLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999888764 2 16778888899999998764
No 74
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.14 E-value=4.7e-05 Score=65.40 Aligned_cols=123 Identities=5% Similarity=-0.140 Sum_probs=104.2
Q ss_pred HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108 155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS 234 (425)
Q Consensus 155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (425)
.+..++..+|++..+|..+..++...+. +.+.+..+.++++.+|.|..+|..++.+....+. +++.+..+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~ 78 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGX--------YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ--YDLAIHSY 78 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence 3567888999999999998888777654 6899999999999999999999999999988776 78999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
++.+..+|.|..+|.++..++..+ + -+++.+.+..+++..+|.+......+..
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQX-G-------------------ELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 999999999999999998887664 2 1567788889999999988776555433
No 75
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.13 E-value=3.1e-05 Score=67.26 Aligned_cols=127 Identities=6% Similarity=-0.049 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHH-HHHHhhccchhHHhH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWV-INMISRNCSTLQWII 191 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwl-l~~l~~~~~~~~~~~ 191 (425)
++++.....++..+|++..+|.....+....+ .+.+++.....++..+|.++.+|.....+ ....+.. ..
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~------~~ 97 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH------MT 97 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC------CC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc------ch
Confidence 45677888999999999999999999888774 78999999999999999999999988887 4444331 01
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY 250 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~y 250 (425)
.+.+..+.++++.+|.+..+|.....+....+. +...+..+.+.+..+|.|...+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCccHHHH
Confidence 788899999999999999999999888877765 788999999999999998765433
No 76
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.12 E-value=0.0006 Score=62.31 Aligned_cols=128 Identities=7% Similarity=-0.084 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
..++++.....++.++|++..+|.....+.... ..+++++.++..++..+|++..+|.....++...+.
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-------- 126 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQA---GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-------- 126 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--------
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--------
Confidence 347889999999999999999999999888877 478999999999999999999999999988887664
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHR 252 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~ 252 (425)
+++.+.++.++++.+|.+..+......+.. . ..+.+.+..+.+.+..++.+...|....
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 185 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-K--LDEKQAKEVLKQHFEKSDKEQWGWNIVE 185 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-H--HCHHHHHHHHHHHHHHSCCCSTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-h--cCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 688889999999999998765544443322 1 2467788888888888888877765433
No 77
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=9.3e-05 Score=59.27 Aligned_cols=121 Identities=6% Similarity=-0.027 Sum_probs=102.5
Q ss_pred hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108 125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (425)
Q Consensus 125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (425)
.+|....+|.....+.... ..+.+.+.+...++..+|++..+|..+..+....+. +.+.+.++.++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKV---ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN--------YAGAVQDCERAICI 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHhc
Confidence 3456677777777777666 478999999999999999999999999888877654 68889999999999
Q ss_pred cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 205 SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
+|.+..+|.....+....+. +...+....+.+..+|.+..+|.....+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 76 DPAYSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 99999999999998887765 78889999999999999999988877776553
No 78
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.09 E-value=6.5e-05 Score=60.82 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=101.1
Q ss_pred CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108 126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (425)
Q Consensus 126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (425)
.|.+..+|..+..+....+ .+++++..+..++..+|++..+|..+..+....+. +++.+.++.++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKG---DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE--------FQLALKDCEECIQLE 80 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTT---CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC--------HHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC
Confidence 4677888888888877763 67999999999999999999999888887765543 688899999999999
Q ss_pred CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 206 KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 206 pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
|.+..+|.....+...++. +.+.+....+.+..+|.+..+|.....+...
T Consensus 81 ~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 PTFIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999998887765 7888999999999999998888877766543
No 79
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.08 E-value=4.5e-05 Score=74.75 Aligned_cols=131 Identities=8% Similarity=-0.148 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---------------hhhhhHHHHHHHH
Q 045108 115 VMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---------------EQAWSHRRWVINM 179 (425)
Q Consensus 115 ~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---------------y~~W~hRrwll~~ 179 (425)
++.....++..+|++..+|+.+..++...+ .+.+++..+..++..+|.+ ..+|..+..++.+
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g---~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEG---KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667889999999999999888774 7999999999999999999 5899999988888
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
++. +.+.+..+.++++.+|.|..+|..+..++..++. +++.+..+++.+..+|.|..+|..+..+...+
T Consensus 209 ~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 209 LQA--------FSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp TTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred cCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 765 7899999999999999999999999999988876 78999999999999999999999888877664
No 80
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=3.1e-05 Score=79.26 Aligned_cols=132 Identities=7% Similarity=-0.098 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---------------hhhhhHHHHHHH
Q 045108 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---------------EQAWSHRRWVIN 178 (425)
Q Consensus 114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---------------y~~W~hRrwll~ 178 (425)
++++.....+..+|++..+|+.+...+... ..+.+++.....++..+|.+ ..+|..+..++.
T Consensus 252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~---g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKG---GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhcCHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666788899999999999988887 48999999999999999999 689999999988
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 179 MISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
++.. +.+.+..+.++++.+|.|..+|..|..++..++. +++.+..+.+.+..+|.|..+|..+..+...+
T Consensus 329 ~~g~--------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 329 KLRE--------YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred HhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8765 7899999999999999999999999999988775 78999999999999999999999988877664
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.06 E-value=0.00019 Score=74.03 Aligned_cols=162 Identities=8% Similarity=-0.020 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHc-------cCCcccHH-------HHHHHHHHHHh-hCCCchhhhhHHHHHH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSN-------KQLLPILM-------DELRLSAVVLS-HSPKSEQAWSHRRWVI 177 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~-------~~~~~~l~-------~EL~~~~~lL~-~~PKsy~~W~hRrwll 177 (425)
.+++...+.+|..+|.+..+|.....++.. .+ .++ +.+..+..++. .+|++..+|....-+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g---~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG---DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc---chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 467889999999999999999999988874 32 344 78999999997 8999999999988887
Q ss_pred HHHhhccchhHHhHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 178 NMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
...+. +++...+..++++.+|.+. .+|.....+..+.+. ++...+.+.+.+...|.+.+.|.-...+..
T Consensus 332 ~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 332 ESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHTTC--------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred HhcCC--------HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 76654 6788899999999999996 589988877766554 678899999999998887776654333321
Q ss_pred HhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108 257 WNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306 (425)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr 306 (425)
...+ -.++......+++..+|++..+|...-
T Consensus 402 ~~~~-------------------~~~~A~~~~e~al~~~p~~~~~~~~~~ 432 (530)
T 2ooe_A 402 YCSK-------------------DKSVAFKIFELGLKKYGDIPEYVLAYI 432 (530)
T ss_dssp HHTC-------------------CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcC-------------------ChhHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 1111 145667777888889999999996643
No 82
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.04 E-value=0.00036 Score=66.83 Aligned_cols=158 Identities=6% Similarity=-0.136 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++.... |++..++..+..++...+ ..++++..+..++..+|++...-....|+-..... ..+
T Consensus 117 ~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~------~~~ 182 (291)
T 3mkr_A 117 PDAALRTLHQ-----GDSLECMAMTVQILLKLD---RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG------EKL 182 (291)
T ss_dssp HHHHHHHHTT-----CCSHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT------THH
T ss_pred HHHHHHHHhC-----CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc------hHH
Confidence 4556665555 899999999999988874 78999999999999999986433333333222211 237
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
++.+.+..++++.+|.+-.+|..+..+...++. +++..+.+.+.+..+|.|-.+|.++..+.... +.
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~-g~---------- 249 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQEALDKDSGHPETLINLVVLSQHL-GK---------- 249 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TC----------
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC----------
Confidence 899999999999999999999999999988886 78999999999999999999999998777653 21
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
..+....+..+++..+|+|..+-.+
T Consensus 250 --------~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 250 --------PPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 0122357788999999999876554
No 83
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=0.00012 Score=60.12 Aligned_cols=119 Identities=8% Similarity=-0.075 Sum_probs=99.3
Q ss_pred HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHH
Q 045108 124 LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE 203 (425)
Q Consensus 124 l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (425)
..+|....+|.....+.... ..+++.+.....++..+|++..+|..+..++..++. +.+.+..+.++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~ 71 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALE 71 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHH
Confidence 35788889999998888877 479999999999999999999999999999887765 6889999999999
Q ss_pred hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC-----ChhHHHHHHHHH
Q 045108 204 RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA-----DNSCFHYHRRLM 255 (425)
Q Consensus 204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~-----N~SaW~yR~~ll 255 (425)
.+|.+..+|...+.+...++. +...+..+.+.+..+|. +...+.....+.
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999988775 78889999999998887 455555544443
No 84
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.02 E-value=4.9e-05 Score=64.15 Aligned_cols=124 Identities=5% Similarity=-0.160 Sum_probs=101.8
Q ss_pred HHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHH
Q 045108 155 LSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQS 234 (425)
Q Consensus 155 ~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~ 234 (425)
.+..++..+|++..+|.....++.+.+. +.+.+..+.++++.+|.|..+|...+.+....+. +++.+..+
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~ 75 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGK--------WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL--YEQALQSY 75 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence 4456677889999999888877776554 6899999999999999999999999999988775 78999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108 235 RNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 235 ~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L 308 (425)
++.+..+|.|..+|.++..++..+ + -+++.+.+..+++..+|.+...+..+..+
T Consensus 76 ~~al~~~p~~~~~~~~lg~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 76 SYGALMDINEPRFPFHAAECHLQL-G-------------------DLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999988887664 2 15677888889999999988776654443
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.00 E-value=0.0021 Score=59.27 Aligned_cols=158 Identities=8% Similarity=-0.079 Sum_probs=118.6
Q ss_pred HHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccchhHHhHHHHHHHHH
Q 045108 123 LLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVE 199 (425)
Q Consensus 123 Ll~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~ 199 (425)
..++|....++..+...+... +.+.+++..+..++..+|.+ ..+|..+..+..+.+. +.+.+..+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~ 76 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQ---GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE--------YLLAASEYE 76 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHT---TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc--------HHHHHHHHH
Confidence 356888999999998888776 47999999999999999999 8899999888887765 789999999
Q ss_pred HHHHhcCCc---hhhhhHHHHHHHh--------hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHH-------------
Q 045108 200 KIAERSKMN---YRAWNHRCWLVSF--------MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLM------------- 255 (425)
Q Consensus 200 ~~l~~~pkN---Y~AW~hR~wll~~--------~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll------------- 255 (425)
++++.+|.+ ..++...+.+... .+ .+.+.+...++.+..+|.+..++.-+..+.
T Consensus 77 ~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 77 RFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT--DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp HHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH--HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchhHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998855 4577778877766 33 478999999999999999988774442221
Q ss_pred HHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc---HHHHHHHHH
Q 045108 256 IWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA---LWLHRRFLS 309 (425)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS---aW~yrr~Ll 309 (425)
-.+.. ...-+++.+....++|..+|++.. +|..+-.+.
T Consensus 155 a~~~~----------------~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 195 (261)
T 3qky_A 155 ARLYE----------------RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY 195 (261)
T ss_dssp HHHHH----------------HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHH----------------HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 01000 011367888999999999998654 555543333
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.99 E-value=0.00038 Score=59.08 Aligned_cols=146 Identities=8% Similarity=-0.066 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY 209 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY 209 (425)
..+|..+..+.... ..+++.+..+..++..+|++..+|.....+....+. +++.+.++.++++.+|.+.
T Consensus 8 ~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKA---GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHH---TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCH
Confidence 34555666666655 478999999999999999999999888888776554 6888999999999999999
Q ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHH
Q 045108 210 RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNE 289 (425)
Q Consensus 210 ~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~ 289 (425)
.+|.....+....+. +.+.++..++.+..+|.+..+|..+..+.... + -+++.+.+..
T Consensus 77 ~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~-------------------~~~~A~~~~~ 134 (186)
T 3as5_A 77 KVATVLGLTYVQVQK--YDLAVPLLIKVAEANPINFNVRFRLGVALDNL-G-------------------RFDEAIDSFK 134 (186)
T ss_dssp HHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-C-------------------cHHHHHHHHH
Confidence 999999888877665 78889999999999999999888877766543 1 2567788888
Q ss_pred HHHhhcCCCccHHHHHHHH
Q 045108 290 SLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 290 ~~I~~~p~neSaW~yrr~L 308 (425)
+++..+|.+..+|...-.+
T Consensus 135 ~~~~~~~~~~~~~~~la~~ 153 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFS 153 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHH
Confidence 9999999987777654333
No 87
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.99 E-value=6.7e-05 Score=64.61 Aligned_cols=97 Identities=13% Similarity=-0.020 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....+|.++|++..+|..+..++...+ .+++++..+..++..+|++..+|..+..++..++. +
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~ 95 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASG---QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD--------Y 95 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------H
Confidence 478999999999999999999999999998874 79999999999999999999999999999988765 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLV 219 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll 219 (425)
++.+..+.++++.+|.|..+|..+....
T Consensus 96 ~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 96 KGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 8999999999999999999987776543
No 88
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00011 Score=60.19 Aligned_cols=98 Identities=5% Similarity=-0.010 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....+|.++|++..+|..+..+....+ .+++++..+..++..+|++..+|..+..++..++. +
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~ 88 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--------Y 88 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC--------H
Confidence 478999999999999999999999999998874 79999999999999999999999999999988765 6
Q ss_pred HHHHHHHHHHHHhc------CCchhhhhHHHHHHH
Q 045108 192 ERESELVEKIAERS------KMNYRAWNHRCWLVS 220 (425)
Q Consensus 192 ~~EL~~~~~~l~~~------pkNY~AW~hR~wll~ 220 (425)
++.+..+.++++.+ |.|-.++....-+..
T Consensus 89 ~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 89 ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88999999999999 888877776555443
No 89
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.98 E-value=3.8e-05 Score=68.08 Aligned_cols=112 Identities=7% Similarity=-0.047 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCC-------chh-----hhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPK-------SEQ-----AWSHRRWVINMISRNCSTLQWIIERESEL 197 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PK-------sy~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (425)
...|..++..+... +.+++++...+++|..+|. +.. +|+.|.-++..++. +++.+..
T Consensus 11 a~~~~~~G~~l~~~---g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~~ 79 (159)
T 2hr2_A 11 AYLALSDAQRQLVA---GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHS 79 (159)
T ss_dssp HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHHH
Confidence 45566677777766 4899999999999999999 444 99999999999876 6888889
Q ss_pred HHHHHHh-------cCCchhhh----hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 198 VEKIAER-------SKMNYRAW----NHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 198 ~~~~l~~-------~pkNY~AW----~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
+.++++. +|.+..+| ..|+.++..++. +++.+..+++.++.+|.|-....-+.-+
T Consensus 80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999 99999999 999999999987 7899999999999888776554444333
No 90
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=0.00034 Score=54.87 Aligned_cols=112 Identities=8% Similarity=0.017 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY 209 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY 209 (425)
..+|.....+.... ..+++.+.++..++..+|.+..+|.....+....+. +.+.+..+.++++.+|.+.
T Consensus 4 ~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSV---GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD--------YQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhCcccH
Confidence 45666666666655 478999999999999999999999988888776654 6888899999999999999
Q ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 210 RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 210 ~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
.+|.....+....+. +.+.+....+.+..+|.+..+|.....+
T Consensus 73 ~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 73 KGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999988887765 7788999999999999998888776544
No 91
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.95 E-value=5e-05 Score=59.38 Aligned_cols=108 Identities=7% Similarity=0.114 Sum_probs=94.1
Q ss_pred hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108 125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (425)
Q Consensus 125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (425)
++|++..+|..+..+.... ..+.+++.....++..+|++..+|..+..+....+. +++.+.++.++++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDA---GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--------YEEAVDCYNYVINV 69 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSS---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHh
Confidence 4788889999888888776 478999999999999999999999988888877654 68889999999999
Q ss_pred cCC--chhhhhHHHHHHHhh-chhhHHHHHHHHHHHHhhcCCCh
Q 045108 205 SKM--NYRAWNHRCWLVSFM-TREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 205 ~pk--NY~AW~hR~wll~~~-~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
+|. +..+|.....+...+ +. +++.++++.+.+..+|.+.
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGK--EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSC--SHHHHHHHHHHGGGCCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhcccCCC
Confidence 999 999999999988877 65 6788999999999988764
No 92
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.94 E-value=0.00013 Score=63.15 Aligned_cols=133 Identities=5% Similarity=-0.069 Sum_probs=106.9
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHH-HHhhchh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWL-VSFMTRE 225 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wl-l~~~~~~ 225 (425)
..+++++..+..++..+|.+..+|.....+....+. +.+.+.+..++++.+|.|..+|.....+ ....+..
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND--------YSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 356777889999999999999999999888877654 6889999999999999999999999888 4444441
Q ss_pred hHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHH
Q 045108 226 QVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHR 305 (425)
Q Consensus 226 ~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yr 305 (425)
...+.+..+.+.+..+|.+..+|..+..+.... + -+++.+.+..+++..+|.+...+...
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-------------------~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQ-A-------------------NYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-c-------------------cHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 127889999999999999999998888776653 1 26778888999999999998766554
Q ss_pred HH
Q 045108 306 RF 307 (425)
Q Consensus 306 r~ 307 (425)
..
T Consensus 156 ~~ 157 (177)
T 2e2e_A 156 ES 157 (177)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 93
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00033 Score=57.79 Aligned_cols=118 Identities=8% Similarity=-0.018 Sum_probs=101.5
Q ss_pred HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHH
Q 045108 124 LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCSTLQWIIERESELVEK 200 (425)
Q Consensus 124 l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~ 200 (425)
..+|....+|..+....... ..+.+.+.....++..+|.+ ..+|..+..+...... +++.+..+.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~ 90 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKC---GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--------YDKAETEASK 90 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--------HHHHHHHHHH
Confidence 45788889999888888776 47899999999999999998 8888888888776654 6889999999
Q ss_pred HHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 201 IAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 201 ~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
+++.+|.+..+|..+..+...++. +++.+..+.+.+..+|.|..+|.....+
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhhCccCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999999999999999888775 7888999999999999999888765544
No 94
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.93 E-value=0.00017 Score=75.12 Aligned_cols=127 Identities=9% Similarity=-0.107 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++....++.++|++..+|.....++...+ .+++++..+..++..+|++..+|.....++...++ +
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~ 107 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ---RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ--------A 107 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------H
Confidence 478999999999999999999999999988874 78999999999999999999999999988887765 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhh---chhhHHHHHHHHHHHHhhcCCChhHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFM---TREQVLNELKQSRNWSGLHVADNSCFHYH 251 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~---~~~~~~~EL~~~~~~i~~d~~N~SaW~yR 251 (425)
++.++.+.++++.+|.+..+|.....+...+ +. .++.++.+.+.+..+|.+.++|...
T Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHHHHHhcCCcccChHHHh
Confidence 8899999999999999999999999999887 54 7888999999999999999888543
No 95
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.91 E-value=0.00046 Score=58.07 Aligned_cols=114 Identities=8% Similarity=-0.035 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..+.... ..+.+.+..+..++..+|++..+|.....+...++. +
T Consensus 29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--------~ 97 (166)
T 1a17_A 29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK--------F 97 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc--------H
Confidence 47789999999999999999999999988877 478999999999999999999999998888877665 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRN 236 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~ 236 (425)
.+.+..+.++++.+|.+..+|.+...+...+....+.+.++...+
T Consensus 98 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 98 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 888999999999999999998776555433332234444444443
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.91 E-value=0.00031 Score=66.89 Aligned_cols=133 Identities=5% Similarity=-0.142 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....+|..+|++..++.....++...+ ..++++..+..++..+|.....+......+..... .
T Consensus 133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~--------~ 201 (287)
T 3qou_A 133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALN---RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA--------D 201 (287)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT---CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT--------S
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC---CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc--------c
Confidence 355666666666666666666666666555552 55666666666666666443333333322222222 1
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC--hhHHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD--NSCFHYHRRLMIW 257 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N--~SaW~yR~~ll~~ 257 (425)
..++..+.++++.+|.|..+|....-++...+. +++.++.+.+.+..+|.+ -.+|.....++..
T Consensus 202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 334555566666666666666666665555544 456666666666666665 4455554444433
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.91 E-value=0.00049 Score=54.86 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|.....+.... ..+++.+..+..++..+|.+..+|.....+....+. +
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~ 85 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------Y 85 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------H
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh---cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC--------H
Confidence 46788899999999999999999888877766 378999999999999999999998877766655443 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
++.+.++.++++.+|.+..+|.....+....+. +.+.+..+.+.+..+|.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHHHHHccCCCC
Confidence 888999999999999999999988888776654 678888899988888753
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.90 E-value=0.00019 Score=62.62 Aligned_cols=134 Identities=7% Similarity=-0.126 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|.....++...+ .+++.+..+..++..+| ++..+.....+... .... .
T Consensus 22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~-~~~~------~ 90 (176)
T 2r5s_A 22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETK---QFELAQELLATIPLEYQ-DNSYKSLIAKLELH-QQAA------E 90 (176)
T ss_dssp HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH-HHHT------S
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH-hhcc------c
Confidence 478999999999999999999999999988774 78999999999999999 77665544433211 1100 1
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC--hhHHHHHHHHHHHh
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD--NSCFHYHRRLMIWN 258 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N--~SaW~yR~~ll~~l 258 (425)
..++..+.++++.+|.|..+|....-++...+. +++.+..+.+.+..+|.. ..+|.....++..+
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 235788999999999999999999999888776 788999999999999876 45888777666653
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.89 E-value=0.0014 Score=52.11 Aligned_cols=135 Identities=10% Similarity=0.059 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchh
Q 045108 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYR 210 (425)
Q Consensus 131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~ 210 (425)
.+|+....+.... ..+++.+.++..++..+|.+..+|.....+....+. +++.+.++.++++.+|.+..
T Consensus 2 ~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHc---CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHCCCchH
Confidence 3566666666555 378999999999999999999999887776665543 67888999999999999999
Q ss_pred hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHH
Q 045108 211 AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNES 290 (425)
Q Consensus 211 AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~ 290 (425)
+|.....+....+. +.+.+..+.+.+..+|.+..+|.....+.... + -+++.+.+..+
T Consensus 71 ~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-------------------~~~~A~~~~~~ 128 (136)
T 2fo7_A 71 AWYNLGNAYYKQGD--YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-G-------------------DYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-T-------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-c-------------------cHHHHHHHHHH
Confidence 99888887766654 78889999999999999988887766665432 1 15566777778
Q ss_pred HHhhcCCC
Q 045108 291 LIKRYVGR 298 (425)
Q Consensus 291 ~I~~~p~n 298 (425)
.+..+|.+
T Consensus 129 ~~~~~~~~ 136 (136)
T 2fo7_A 129 ALELDPRS 136 (136)
T ss_dssp HHHHSTTC
T ss_pred HHccCCCC
Confidence 88877753
No 100
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00024 Score=60.88 Aligned_cols=116 Identities=9% Similarity=-0.021 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------------------CCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------------------SPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------------------~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
..+|.-++..+... ..+.+++.....++.. +|.+..+|..+..+..+++. +
T Consensus 11 a~~~~~~G~~~~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------~ 79 (162)
T 3rkv_A 11 VEALRQKGNELFVQ---KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--------L 79 (162)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------H
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------H
Confidence 45566677766665 4789999999999988 78888999999999888765 7
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHh
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN-SCFHYHRRLMIWN 258 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~-SaW~yR~~ll~~l 258 (425)
.+.+..+.++++.+|.|..+|..++.++..++. +.+.+..+.+.+..+|.|- ........+...+
T Consensus 80 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 80 HEAEETSSEVLKREETNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988876 7899999999999999998 5566665555443
No 101
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.86 E-value=0.00093 Score=68.75 Aligned_cols=159 Identities=6% Similarity=-0.129 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHH-hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-hhhhHHHHHHHHHhhccchhHHh
Q 045108 113 IEVMIHSKALLL-LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-QAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 113 ~~~L~~t~~lLl-~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
++++.....++. ++|++..+|.....+....+ .+++.......++..+|+++ .+|.....++.+.+.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-------- 371 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-------- 371 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--------
Confidence 478999999997 89999999999999888774 78999999999999999986 589988877766554
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHH-hhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCC
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVS-FMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNN 269 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~-~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~ 269 (425)
+++...++.++++..|.++++|.-..++.- ..+. .+......++.++.+|.+...|.....+..+. +
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~--~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~-g--------- 439 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-N--------- 439 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-T---------
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC-C---------
Confidence 578889999999999999888876666532 2333 67889999999999999999997665554332 1
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhhcCCCc----cHHHH
Q 045108 270 SSGYFVETYQVWKEELDWNESLIKRYVGRE----ALWLH 304 (425)
Q Consensus 270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne----SaW~y 304 (425)
-.++......+++...|.+. .+|..
T Consensus 440 ----------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 440 ----------EDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp ----------CHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred ----------CHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 13444555566777665543 48854
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.85 E-value=0.0039 Score=56.50 Aligned_cols=166 Identities=5% Similarity=-0.155 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh---hhhHHHHHHHHHhhcc-
Q 045108 112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ---AWSHRRWVINMISRNC- 184 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~---~W~hRrwll~~l~~~~- 184 (425)
.++++.....++..+|+.. .++..+..+.... ..+++++...+.++..+|++.. +|..+..+...+....
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 4789999999999999864 6888889888877 4799999999999999999986 6777777765532100
Q ss_pred -------c--hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh---------------hchhhHHHHHHHHHHHHhh
Q 045108 185 -------S--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSF---------------MTREQVLNELKQSRNWSGL 240 (425)
Q Consensus 185 -------~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~---------------~~~~~~~~EL~~~~~~i~~ 240 (425)
. .-...+++.+..+.++++.+|.+-.+|.-+..+... +....+...+...++.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 176 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD 176 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 0 001347889999999999999999988644332111 1112467889999999999
Q ss_pred cCCCh---hHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108 241 HVADN---SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA 300 (425)
Q Consensus 241 d~~N~---SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS 300 (425)
+|.+- -++..+..+..++ + ..++.+++...++...|.+..
T Consensus 177 ~p~~~~~~~a~~~l~~~~~~~-g-------------------~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 177 YPDTQATRDALPLMENAYRQM-Q-------------------MNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp STTSHHHHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHCCSCCCC
T ss_pred CcCCCccHHHHHHHHHHHHHc-C-------------------CcHHHHHHHHHHHhhCCCchh
Confidence 99876 4566666665553 1 145566777777777777654
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.84 E-value=0.00059 Score=64.90 Aligned_cols=154 Identities=8% Similarity=-0.099 Sum_probs=122.4
Q ss_pred HhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHH
Q 045108 124 LLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAE 203 (425)
Q Consensus 124 l~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~ 203 (425)
..-|++..++......+... +.+.+++..+..+|..+|++..+|....-++...+. +++.+..+.+++.
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~l~~~~~ 179 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQE---SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR--------SEDAEAVLXTIPL 179 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC--------HHHHHHHHTTSCG
T ss_pred HHcCCchhhHHHHHHHHHhC---CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC--------HHHHHHHHHhCch
Confidence 33499999998888777766 478999999999999999999999999888877665 6889999999999
Q ss_pred hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHH
Q 045108 204 RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKE 283 (425)
Q Consensus 204 ~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (425)
.+|.+...+......+...+. ...+++...+.+..+|.|..++..+..++... + -+++
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~--~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g-------------------~~~~ 237 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAA--DTPEIQQLQQQVAENPEDAALATQLALQLHQV-G-------------------RNEE 237 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T-------------------CHHH
T ss_pred hhcchHHHHHHHHHHHHhhcc--cCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-c-------------------cHHH
Confidence 999766655555544433332 34578889999999999999999988887653 1 2677
Q ss_pred HHHHHHHHHhhcCCC--ccHHHHHHHHHH
Q 045108 284 ELDWNESLIKRYVGR--EALWLHRRFLSL 310 (425)
Q Consensus 284 EL~~~~~~I~~~p~n--eSaW~yrr~Ll~ 310 (425)
.++...+++..+|++ ..+|..+-.++.
T Consensus 238 A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 238 ALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 888889999999999 677777655554
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.81 E-value=0.0016 Score=54.68 Aligned_cols=112 Identities=7% Similarity=-0.003 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNY 209 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY 209 (425)
..+|.....+.... ..+.+++..+..++..+|++..+|..+..+....+. +.+.+..+.++++.+|.+.
T Consensus 13 ~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 13 AEELKTQANDYFKA---KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcccH
Confidence 45566666666655 478999999999999999999999999988877654 6889999999999999999
Q ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 210 RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 210 ~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
.+|.....+...++. +.+.+..+.+.+..+|.+..+|.+....
T Consensus 82 ~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 82 KGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999888775 7889999999999999999988665544
No 105
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.81 E-value=0.00026 Score=58.49 Aligned_cols=100 Identities=10% Similarity=-0.029 Sum_probs=71.5
Q ss_pred HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108 133 WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (425)
Q Consensus 133 Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (425)
|..+...+... ..+.+++..+..++..+|++..+|.....++...+. +.+.+..+.++++.+|.+..+|
T Consensus 20 ~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 20 PMEEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHH
Confidence 44444444444 367888888888888888888888888887776654 5778888888888888888888
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108 213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 213 ~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
.....++...+. +++.+..+++++..+|.+.
T Consensus 89 ~~la~~~~~~g~--~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 89 AALAVSHTNEHN--ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCC
Confidence 888877776654 6777888888888887653
No 106
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.79 E-value=0.00021 Score=59.06 Aligned_cols=87 Identities=9% Similarity=-0.089 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..++.++...+ .+.+++..+..++..+|.+..+|.....++...+. +
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~--------~ 101 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN--------A 101 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence 478999999999999999999999999998874 78999999999999999999999999998888765 6
Q ss_pred HHHHHHHHHHHHhcCCch
Q 045108 192 ERESELVEKIAERSKMNY 209 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY 209 (425)
++.+..+.++++.+|.+-
T Consensus 102 ~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCcCCC
Confidence 889999999999999764
No 107
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.79 E-value=0.0013 Score=51.81 Aligned_cols=118 Identities=12% Similarity=0.027 Sum_probs=94.4
Q ss_pred CCcc-HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108 126 SCDF-ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (425)
Q Consensus 126 npe~-~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (425)
+|.. ..+|.....+.... ..+++.+.++..++..+|.+..+|.....+....+. +++.+.++.++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALEL 72 (125)
T ss_dssp ---CHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHh
Confidence 4555 66777777776666 478999999999999999999998888777766543 68888999999999
Q ss_pred cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 205 SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 205 ~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
+|.+..+|.....+....+. +.+.+..+++.+..+|.+..++..+..+..
T Consensus 73 ~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999888888877665 788899999999999999888877665543
No 108
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=9.2e-05 Score=65.61 Aligned_cols=90 Identities=10% Similarity=0.063 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHhCCc-------cHH-----HHHHHHHHHHccCCcccHHHHHHHHHHHHhh-------CCCchhhh-
Q 045108 111 VAIEVMIHSKALLLLSCD-------FAT-----AWNSRKLIVSNKQLLPILMDELRLSAVVLSH-------SPKSEQAW- 170 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe-------~~T-----aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~-------~PKsy~~W- 170 (425)
..++++..++.+|.++|+ +.. +|+.|..++..++ .+++.+..++.+|.. +|++..+|
T Consensus 26 ~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg---r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~ 102 (159)
T 2hr2_A 26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR---SFDEALHSADKALHYFNRRGELNQDEGKLWI 102 (159)
T ss_dssp CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence 358899999999999999 554 9999999999984 899999999999999 99999999
Q ss_pred ---hHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhh
Q 045108 171 ---SHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRA 211 (425)
Q Consensus 171 ---~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~A 211 (425)
+.|..++..++. +++.+....++++.+|..-.+
T Consensus 103 ~~~~~rG~aL~~lgr--------~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 103 SAVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHhHHHHHHHCCC--------HHHHHHHHHHHHhcCCCcHHH
Confidence 999999999876 689999999999999965444
No 109
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.77 E-value=0.00065 Score=54.17 Aligned_cols=101 Identities=9% Similarity=-0.043 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..+.... ..+++++..+..++..+|++..+|.....+....+. +
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 96 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK--------H 96 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---hchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC--------H
Confidence 47789999999999999999999999988877 478999999999999999999999999888877654 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (425)
.+.+.++.++++.+|.+..+|.....+...++
T Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 88899999999999999999988877766544
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.76 E-value=0.00054 Score=66.93 Aligned_cols=102 Identities=11% Similarity=-0.010 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDF---------------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWV 176 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~---------------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwl 176 (425)
.++++.....+|.++|++ ..+|+.+..++...+ .+.+++..+..+|..+|++..+|..+..+
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 478999999999999999 699999999998874 89999999999999999999999999999
Q ss_pred HHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 177 INMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 177 l~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
+..++. +++.+..+.++++.+|.|-.+|.....+...++.
T Consensus 240 ~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 240 HLAVND--------FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHTTC--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 888765 6899999999999999999999999888877654
No 111
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=0.00022 Score=63.15 Aligned_cols=100 Identities=6% Similarity=-0.058 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCC-------cccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQL-------LPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC 184 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~-------~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~ 184 (425)
-+++++....++.+||++..+|+..+.++..... ...+++++..+..+|.++|++..+|+...-++..++...
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 3678889999999999999999999988876530 113679999999999999999999999999998775321
Q ss_pred ch---hHHhHHHHHHHHHHHHHhcCCchhh
Q 045108 185 ST---LQWIIERESELVEKIAERSKMNYRA 211 (425)
Q Consensus 185 ~~---~~~~~~~EL~~~~~~l~~~pkNY~A 211 (425)
++ ....+++.+.++.++++.+|.|-..
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 10 1234788999999999999987543
No 112
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.73 E-value=0.00062 Score=64.62 Aligned_cols=158 Identities=9% Similarity=-0.063 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..++...+ .+++++..+..++..+|.+..+|..+..++..++. +
T Consensus 20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~ 88 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVKAHFFLGQCQLEMES--------Y 88 (281)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------H
Confidence 477899999999999999999999999888874 78999999999999999999999999999888765 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSS 271 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~ 271 (425)
++.+..+.++++.+|.+..+.....|..-.... ............+.+.....+...++.+
T Consensus 89 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~l~~~-------------- 149 (281)
T 2c2l_A 89 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK-----KKRWNSIEERRIHQESELHSYLTRLIAA-------------- 149 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH-----HHHHHHHHHTCCCCCCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------
Confidence 888999999999999775554444443322211 1122222234566677777776655432
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 272 GYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 272 ~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
-.++.++..+.+++.+|++..+..-...
T Consensus 150 --------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 177 (281)
T 2c2l_A 150 --------ERERELEECQRNHEGHEDDGHIRAQQAC 177 (281)
T ss_dssp --------HHHHHHTTTSGGGTTTSCHHHHTHHHHH
T ss_pred --------HHHHHHHHHHhhhccccchhhhhhHHHH
Confidence 1344555556667777777655544433
No 113
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.73 E-value=0.0011 Score=54.34 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=98.1
Q ss_pred hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108 162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241 (425)
Q Consensus 162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d 241 (425)
.+|.+..+|.....+....+. +.+.+.+..++++.+|.+..+|..+..+...++. +...+..+.+.+..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRK--------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--PEQALADCRRALELD 73 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC
T ss_pred CccccHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhC
Confidence 467888888888877776654 7899999999999999999999999999988775 788999999999999
Q ss_pred CCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCC-----CccHHHHHHHHHHH
Q 045108 242 VADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG-----REALWLHRRFLSLY 311 (425)
Q Consensus 242 ~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~-----neSaW~yrr~Ll~~ 311 (425)
|.+..+|..+..+...+ + -+++.+.+..+++..+|+ +..++...+.+...
T Consensus 74 p~~~~~~~~l~~~~~~~-~-------------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEM-E-------------------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp TTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH-h-------------------hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887664 2 156778888888888888 77777776655543
No 114
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.69 E-value=0.00052 Score=55.28 Aligned_cols=99 Identities=8% Similarity=0.018 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..+.... ..+++++..+..++..+|++..+|.....+...++. +
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~ 100 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD--------Y 100 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh--------H
Confidence 47789999999999999999999999988776 478999999999999999999999999988887664 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSF 221 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~ 221 (425)
++.+..+.++++.+|.+..+|.....+...
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 889999999999999999988877766644
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.64 E-value=0.00034 Score=61.02 Aligned_cols=151 Identities=9% Similarity=-0.110 Sum_probs=109.3
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
|.....+.-+...+... ..+.+.+..+..++..+|++..+|.....++...+. +++.+..+.++++.+|
T Consensus 3 ~~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~--------~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQ---GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ--------FELAQELLATIPLEYQ 71 (176)
T ss_dssp ---CTTHHHHHHHHHHT---TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC--------HHHHHHHHTTCCGGGC
T ss_pred CCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHhhhccC
Confidence 33334444455555554 478999999999999999999999999999887765 6889999999999999
Q ss_pred CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHH
Q 045108 207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELD 286 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~ 286 (425)
+...+.....+... ........+..+++.+..+|.|..+|..+..++... + -+++.+.
T Consensus 72 -~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~-g-------------------~~~~A~~ 129 (176)
T 2r5s_A 72 -DNSYKSLIAKLELH-QQAAESPELKRLEQELAANPDNFELACELAVQYNQV-G-------------------RDEEALE 129 (176)
T ss_dssp -CHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-T-------------------CHHHHHH
T ss_pred -ChHHHHHHHHHHHH-hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-------------------cHHHHHH
Confidence 76555444433211 110112358899999999999999999988887663 2 1677788
Q ss_pred HHHHHHhhcCCC--ccHHHHHHHHHH
Q 045108 287 WNESLIKRYVGR--EALWLHRRFLSL 310 (425)
Q Consensus 287 ~~~~~I~~~p~n--eSaW~yrr~Ll~ 310 (425)
...+++..+|++ ..+|.....++.
T Consensus 130 ~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 130 LLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHhCcccChHHHHHHHHHHHH
Confidence 888999999986 447776654443
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.63 E-value=0.0014 Score=57.99 Aligned_cols=117 Identities=9% Similarity=-0.108 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch----------------hhhhHHHHHHHHHhhccchhHHhHH
Q 045108 129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE----------------QAWSHRRWVINMISRNCSTLQWIIE 192 (425)
Q Consensus 129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy----------------~~W~hRrwll~~l~~~~~~~~~~~~ 192 (425)
...+|..++...... ..+.+++.....++...|+++ .+|..+..+...++. ++
T Consensus 37 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~ 105 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKK---NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YP 105 (198)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------HH
Confidence 345566667666665 478999999999999999988 788888777776654 68
Q ss_pred HHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 193 RESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 193 ~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
+.+..+.++++.+|.+..+|..++.+...++. ++..+..+.+.+..+|.|..++.....+...+
T Consensus 106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 106 KAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887775 78899999999999999999998888777654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.62 E-value=0.0018 Score=57.19 Aligned_cols=120 Identities=4% Similarity=-0.073 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++ +| +..+|+.+..+....+ .+++++..+..++..+|++..+|..+..+...++. +
T Consensus 22 ~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--------~ 87 (213)
T 1hh8_A 22 WKGALDAFSAVQ--DP-HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK--------Y 87 (213)
T ss_dssp HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc--------H
Confidence 366777777774 44 7789999999888774 78999999999999999999999999998887765 6
Q ss_pred HHHHHHHHHHHHhcCCch----------------hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 192 ERESELVEKIAERSKMNY----------------RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY----------------~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
++.+..+.++++..|.|- .+|..++.+...++. ++..+...++.+..+|.+..+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~ 157 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLALATSMKSEPRHS 157 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCSGGGG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHHHHHHcCcccccc
Confidence 889999999999888877 899999998888775 788999999999999988654
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.60 E-value=0.00099 Score=63.20 Aligned_cols=106 Identities=8% Similarity=-0.063 Sum_probs=93.9
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
|....++..+...+... +.+.+++.....++..+|.++.+|..+..+...++. +.+.+..+.++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p 69 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELDG 69 (281)
T ss_dssp CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSCT
T ss_pred ChhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCC
Confidence 56677888888887776 479999999999999999999999999999887765 6899999999999999
Q ss_pred CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108 207 MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 207 kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
.|..+|..++.++..++. +++.+..+.+.+..+|.|.
T Consensus 70 ~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 70 QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccch
Confidence 999999999999988875 7889999999999988763
No 119
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.59 E-value=0.00015 Score=74.68 Aligned_cols=115 Identities=8% Similarity=-0.040 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
...+++++....+|.++|++..+|+.+..++...+ .+++++.....++..+|++..+|..+..++..+++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~------- 89 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMALGK------- 89 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-------
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence 34678999999999999999999999999998874 79999999999999999999999999999888765
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHH
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSR 235 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~ 235 (425)
+++.++.+.++++.+|.+..+|.....+...+....+++.++..+
T Consensus 90 -~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 -FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 688999999999999999999998877743333223444555555
No 120
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.59 E-value=0.0012 Score=51.55 Aligned_cols=96 Identities=9% Similarity=0.049 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.....++..+|++..+|..+..+.... ..+.+.+..+..++..+|++..+|.....+....+. +
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~ 88 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR--------F 88 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh--------H
Confidence 47889999999999999999999999988877 478999999999999999999999999988887654 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWL 218 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wl 218 (425)
.+.+..+.++++.+|.+-.+|....-+
T Consensus 89 ~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888999999999999998888765443
No 121
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.59 E-value=0.00056 Score=69.87 Aligned_cols=134 Identities=8% Similarity=-0.050 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---------------hhhhh
Q 045108 149 LMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---------------YRAWN 213 (425)
Q Consensus 149 l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---------------Y~AW~ 213 (425)
+++++......+..+|+...+|..+..++.+... +...+..+.++++.+|.+ ..+|.
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~--------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK--------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 3445555566667788888999999988887654 789999999999999999 68999
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHh
Q 045108 214 HRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIK 293 (425)
Q Consensus 214 hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~ 293 (425)
.+..+...++. +...+..+++.+..+|.|..+|..|..++..+ + -+++.+.+..+++.
T Consensus 322 nla~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~-g-------------------~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 322 NLAMCYLKLRE--YTKAVECCDKALGLDSANEKGLYRRGEAQLLM-N-------------------EFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-T-------------------CHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-c-------------------CHHHHHHHHHHHHH
Confidence 99999988776 88999999999999999999999998887664 2 26788899999999
Q ss_pred hcCCCccHHHHHHHHHHHH
Q 045108 294 RYVGREALWLHRRFLSLYL 312 (425)
Q Consensus 294 ~~p~neSaW~yrr~Ll~~~ 312 (425)
.+|+|..+|..+..+...+
T Consensus 380 l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 380 VNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp TC----CHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 9999999999987776654
No 122
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=0.0015 Score=57.72 Aligned_cols=105 Identities=7% Similarity=-0.104 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccc--hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch-
Q 045108 148 ILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCS--TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR- 224 (425)
Q Consensus 148 ~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~--~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~- 224 (425)
.+++.+.....++..+|++..+|....-++..+..... .....+++.+..++++++.+|++-.||...+-++..++.
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 47888999999999999999999999998888765321 122457899999999999999999999999999877642
Q ss_pred --------hhHHHHHHHHHHHHhhcCCChhHHHHHH
Q 045108 225 --------EQVLNELKQSRNWSGLHVADNSCFHYHR 252 (425)
Q Consensus 225 --------~~~~~EL~~~~~~i~~d~~N~SaW~yR~ 252 (425)
..+++.++++++.++.+|.|-..|....
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3588999999999999999876655544
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.52 E-value=0.00056 Score=56.86 Aligned_cols=105 Identities=9% Similarity=-0.057 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108 128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (425)
Q Consensus 128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (425)
+...++.-.+...... +.+++++...+.++..+|++..+|+.+..+...++. +++.+..+.++++.+|.
T Consensus 6 d~A~a~~~lG~~~~~~---~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~--------~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQ---KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK--------FAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh--------HHHHHHHHHHHHHhCcc
Confidence 4455666667666665 478999999999999999999999999999888765 68899999999999998
Q ss_pred chhhhhHHHHHHHhhch-----hhHHHHHHHHHHHHhhcCC
Q 045108 208 NYRAWNHRCWLVSFMTR-----EQVLNELKQSRNWSGLHVA 243 (425)
Q Consensus 208 NY~AW~hR~wll~~~~~-----~~~~~EL~~~~~~i~~d~~ 243 (425)
+..++..+..+..+++. ..+...+++..+.+..+|.
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 87655554444443332 2367788888888887764
No 124
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.51 E-value=0.00083 Score=57.44 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHH
Q 045108 112 AIEVMIHSKALLLL------------------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR 173 (425)
Q Consensus 112 ~~~~L~~t~~lLl~------------------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hR 173 (425)
.++++.....+|.+ +|.+..+|..+..+....+ .+.+++..++.+|..+|.+..+|..+
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 36677777777777 8899999999999998874 79999999999999999999999999
Q ss_pred HHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCch-hhhhHHHHHHH
Q 045108 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNY-RAWNHRCWLVS 220 (425)
Q Consensus 174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY-~AW~hR~wll~ 220 (425)
..++..++. +++.+..+.++++.+|.|- .+.....-+..
T Consensus 104 g~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 104 AKARIAAWK--------LDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999988875 6899999999999999987 44544444433
No 125
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00012 Score=71.80 Aligned_cols=120 Identities=8% Similarity=-0.058 Sum_probs=84.9
Q ss_pred hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-----------------hhhhHHHHHHHHHhhccchh
Q 045108 125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-----------------QAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-----------------~~W~hRrwll~~l~~~~~~~ 187 (425)
..++...+|+.+...+... ..+.+++.....++..+|.+. .+|..+..++.++..
T Consensus 174 ~~~~~a~~~~~~g~~~~~~---g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~----- 245 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKE---EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR----- 245 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSS---SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 3455567777777776665 478999999999999999887 377777777766654
Q ss_pred HHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 188 QWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
+.+.+..+.++++.+|.|..+|..+..++..++. +++.+..+.+.+..+|.|..++..+..+...
T Consensus 246 ---~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 246 ---YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp ---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC------------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999999999999988776 7899999999999999999998887766443
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.50 E-value=0.0011 Score=51.54 Aligned_cols=108 Identities=6% Similarity=-0.071 Sum_probs=88.6
Q ss_pred CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 045108 163 SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHV 242 (425)
Q Consensus 163 ~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~ 242 (425)
+|.+..+|.....+....+. +.+.+..+.++++.+|.+..+|..+..+....+. +++.+..+++.+..+|
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGN--------YTESIDLFEKAIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVIE 71 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSC
T ss_pred CCCcHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCc
Confidence 68889999988887765543 6889999999999999999999999998887765 7889999999999999
Q ss_pred C--ChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108 243 A--DNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGRE 299 (425)
Q Consensus 243 ~--N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne 299 (425)
. +..+|..+..+...+.+ -+++.+++..+.+..+|++.
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~-------------------~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEG-------------------KEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSS-------------------CSHHHHHHHHHHGGGCCCCC
T ss_pred ccchHHHHHHHHHHHHHHhC-------------------CHHHHHHHHHHHhhcccCCC
Confidence 9 88888887766543201 14677888899999988764
No 127
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.47 E-value=0.0033 Score=59.58 Aligned_cols=160 Identities=3% Similarity=-0.200 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe------~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~ 179 (425)
.++++.....++.+.+. ...+++..+.++...+ .+++++.....++...|+. ..+|+....+...
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 129 (292)
T 1qqe_A 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG---NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (292)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 47788888888888532 2678888888888774 7899999999999987754 3466666666665
Q ss_pred H-hhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH-----
Q 045108 180 I-SRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC----- 247 (425)
Q Consensus 180 l-~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa----- 247 (425)
. +. +++.+.++.++++.+|.+ ..++...+.+...++. +.+.+..+++.+..+|.+...
T Consensus 130 ~lg~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 130 DLHD--------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--YIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp TTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred hhcC--------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 2 43 688999999999998865 3466677777776665 789999999999999987642
Q ss_pred --HHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 248 --FHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 248 --W~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
|..+..+...+ + -+.+.+.+..+.+..+|++......
T Consensus 200 ~~~~~lg~~~~~~-g-------------------~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 200 DYFLKKGLCQLAA-T-------------------DAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHT-T-------------------CHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 23333222221 1 2567788889999999988776554
No 128
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.0034 Score=51.45 Aligned_cols=116 Identities=3% Similarity=-0.191 Sum_probs=94.1
Q ss_pred hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhchhhHHHHHHHHHHHH
Q 045108 162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVSFMTREQVLNELKQSRNWS 238 (425)
Q Consensus 162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i 238 (425)
.+|++...|..+.......+. +.+.+.+..++++.+|.+ ..+|..+..+....+. +.+.+..+.+.+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~ 92 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGD--------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED--YDKAETEASKAI 92 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHH
Confidence 457777888777766655443 788999999999999998 8899998888877665 789999999999
Q ss_pred hhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 239 GLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 239 ~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
..+|.+..+|..+..++..+ + -+++.+.+..+++..+|.+..+|.....
T Consensus 93 ~~~~~~~~~~~~~a~~~~~~-~-------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 93 EKDGGDVKALYRRSQALEKL-G-------------------RLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHTSCCHHHHHHHHHHHHHH-T-------------------CHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhCccCHHHHHHHHHHHHHc-C-------------------CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 99999999998888777654 1 2567788889999999999988876543
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.44 E-value=0.004 Score=49.51 Aligned_cols=116 Identities=11% Similarity=-0.062 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108 128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (425)
Q Consensus 128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (425)
+...+|.....+.... ..+.+.+..+..++..+|.+..+|.....+....+. +.+.+.++.++++.+|.
T Consensus 2 ~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKK---KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD--------YNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhccc
Confidence 4456677777766665 478999999999999999999999998888877654 68889999999999998
Q ss_pred c-------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 208 N-------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 208 N-------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
+ ..+|.....+....+. +...++...+.+..+| |...+.....+...
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7 7888888888777665 7888999999999988 66666665555444
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.43 E-value=0.0036 Score=55.21 Aligned_cols=133 Identities=10% Similarity=0.013 Sum_probs=106.7
Q ss_pred HHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhh
Q 045108 133 WNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAW 212 (425)
Q Consensus 133 Wn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW 212 (425)
+..+..+.... ..+++++..+..++ .| ++.+|..+..+....+. +.+.+..+.++++.+|.+..+|
T Consensus 9 ~~~~g~~~~~~---~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~ 74 (213)
T 1hh8_A 9 LWNEGVLAADK---KDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHh---CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccchHHH
Confidence 33445555544 47899999988885 33 77899988888877654 6899999999999999999999
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh----------------hHHHHHHHHHHHhhccccccCCCCCCCchhh
Q 045108 213 NHRCWLVSFMTREQVLNELKQSRNWSGLHVADN----------------SCFHYHRRLMIWNLEGFCHIQDNNSSGYFVE 276 (425)
Q Consensus 213 ~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~----------------SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~ 276 (425)
..++.+...++. +.+.+..+.+.+..+|.|. .+|..+..+...+ +
T Consensus 75 ~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g---------------- 135 (213)
T 1hh8_A 75 FQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK-E---------------- 135 (213)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT-T----------------
T ss_pred HHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc-c----------------
Confidence 999999888775 7889999999999998887 8888887776653 1
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCccH
Q 045108 277 TYQVWKEELDWNESLIKRYVGREAL 301 (425)
Q Consensus 277 ~~~~~~~EL~~~~~~I~~~p~neSa 301 (425)
-+++.+.+..+++..+|++...
T Consensus 136 ---~~~~A~~~~~~al~~~p~~~~~ 157 (213)
T 1hh8_A 136 ---EWKKAEEQLALATSMKSEPRHS 157 (213)
T ss_dssp ---CHHHHHHHHHHHHTTCCSGGGG
T ss_pred ---CHHHHHHHHHHHHHcCcccccc
Confidence 2677788889999999987553
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.39 E-value=0.0046 Score=48.55 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.+++++....++..+|++..+|+....++... ..+++.+.++..++..+|.+..+|.....+....+. +
T Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~ 93 (125)
T 1na0_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------Y 93 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------H
Confidence 47789999999999999999999998888776 478999999999999999999999888877776554 6
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVS 220 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~ 220 (425)
++.+..+.++++.+|.+-.++.....+..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 88899999999999999888877665544
No 132
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.37 E-value=0.016 Score=52.34 Aligned_cols=156 Identities=6% Similarity=0.025 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
..++..+...+... +.+++++..++.++..+|.++ .+|..+..+..+.+. +++.+....++++.+|
T Consensus 4 ~~~~~~~a~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~~l~~~P 72 (225)
T 2yhc_A 4 PNEIYATAQQKLQD---GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------LPLAQAAIDRFIRLNP 72 (225)
T ss_dssp HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHCc
Confidence 34556666655555 478999999999999999885 578888888777654 7899999999999999
Q ss_pred Cchh---hhhHHHHHHHhhc----------------hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108 207 MNYR---AWNHRCWLVSFMT----------------REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD 267 (425)
Q Consensus 207 kNY~---AW~hR~wll~~~~----------------~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~ 267 (425)
.+.. ||..++.+...++ ....++.+...++.++.+|.+.-++.-+..+..-. ......
T Consensus 73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~-~~~~~~-- 149 (225)
T 2yhc_A 73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK-DRLAKY-- 149 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH-HHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH-HHHHHH--
Confidence 9986 7888887765431 12478889999999999999998886544332110 000000
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCc
Q 045108 268 NNSSGYFVETYQVWKEELDWNESLIKRYVGRE 299 (425)
Q Consensus 268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ne 299 (425)
.-..+..-....-+.+.+...+++|..+|++.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 00000000001235778888999999999976
No 133
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.001 Score=65.11 Aligned_cols=122 Identities=8% Similarity=-0.053 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHHHhCCccH-----------------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHH
Q 045108 111 VAIEVMIHSKALLLLSCDFA-----------------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHR 173 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~-----------------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hR 173 (425)
..++++.....+|.++|++. .+|+.+..++...+ .+.+++..+..+|..+|++..+|..+
T Consensus 194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l 270 (338)
T 2if4_A 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK---RYDEAIGHCNIVLTEEEKNPKALFRR 270 (338)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35789999999999999988 48999998888774 78999999999999999999999999
Q ss_pred HHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 174 RWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 174 rwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
..++..+.. +++.+..+.++++.+|.|-.++.....+...... ....+-..+.+++..+|.+
T Consensus 271 g~a~~~~g~--------~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 271 GKAKAELGQ--------MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-LYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHHHTTTC--------HHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCC
Confidence 998887765 6899999999999999999999887766544332 2455566777777777654
No 134
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.34 E-value=0.00065 Score=55.08 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHh---CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 113 IEVMIHSKALLLL---SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 113 ~~~L~~t~~lLl~---npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
++++.....+|.+ +|++..+|.....++...+ .+++++..+..++..+|++..+|.....++..++.
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------- 76 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR------- 76 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-------
Confidence 4577888899999 6999999999999998874 79999999999999999999999999999888775
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHH
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLV 219 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll 219 (425)
+++.+..+.++++.+|.+-.+..|..-+.
T Consensus 77 -~~~A~~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 77 -YEQGVELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp -HHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 68899999999999999988776655443
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.29 E-value=0.0036 Score=55.21 Aligned_cols=101 Identities=13% Similarity=-0.019 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhCCccH----------------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFA----------------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW 175 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~----------------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw 175 (425)
.++++.....++.++|++. .+|..+..+.... ..+++++..+..++..+|++..+|..+..
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN---KDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4789999999999999887 8999999888877 47999999999999999999999999999
Q ss_pred HHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108 176 VINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (425)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (425)
++..++. +++.+..+.++++.+|.+..++.....+...++
T Consensus 131 ~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 131 ANMYFGF--------LEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 8887765 688999999999999999999888777766544
No 136
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.28 E-value=0.0023 Score=63.68 Aligned_cols=116 Identities=9% Similarity=-0.101 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHh----------------hCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108 130 ATAWNSRKLIVSNKQLLPILMDELRLSAVVLS----------------HSPKSEQAWSHRRWVINMISRNCSTLQWIIER 193 (425)
Q Consensus 130 ~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~----------------~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (425)
..+|+.+...+... ..+++++.....++. .+|.+..+|..+..++.++.. +++
T Consensus 223 a~~~~~~g~~~~~~---g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~ 291 (370)
T 1ihg_A 223 SEDLKNIGNTFFKS---QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------WQG 291 (370)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------HHH
T ss_pred HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------HHH
Confidence 45567777766665 478999999999998 788889999999999887765 689
Q ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 045108 194 ESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 194 EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l 258 (425)
.+..+.++++.+|.|..+|..+..++..++. +++.+..+.+.++.+|.|..++.....+...+
T Consensus 292 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776 78999999999999999999998887776654
No 137
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.27 E-value=0.00048 Score=55.85 Aligned_cols=99 Identities=3% Similarity=0.009 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHHhh---CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhch
Q 045108 148 ILMDELRLSAVVLSH---SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTR 224 (425)
Q Consensus 148 ~l~~EL~~~~~lL~~---~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~ 224 (425)
.+++++.++..++.. +|.+..+|.....++...+. +++.+..+.++++.+|.+..+|.....++..++.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence 456788999999999 59999999999998887765 6899999999999999999999999999988876
Q ss_pred hhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 045108 225 EQVLNELKQSRNWSGLHVADNSCFHYHRRLMI 256 (425)
Q Consensus 225 ~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~ 256 (425)
+.+.+..+.+.+..+|.|.....|...+..
T Consensus 77 --~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 77 --YEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp --HHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 788999999999999999998888776543
No 138
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.24 E-value=0.0086 Score=48.13 Aligned_cols=98 Identities=8% Similarity=-0.090 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHHHHhhCCCch---hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHH
Q 045108 147 PILMDELRLSAVVLSHSPKSE---QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN---YRAWNHRCWLVS 220 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy---~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN---Y~AW~hR~wll~ 220 (425)
..+.+.+..+..++..+|.+. .+|.....+....+. +.+.+..+.++++.+|.+ -.++.....+..
T Consensus 16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN--------FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 367777788888888788777 577776666665543 577777778888888877 666777777776
Q ss_pred hhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 221 FMTREQVLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 221 ~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
.++. ++..+...++.+..+|.+..+..-+..+
T Consensus 88 ~~g~--~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 88 GEGK--NTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HTTC--HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HcCC--HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 6654 6677777788888887776665554433
No 139
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.23 E-value=0.006 Score=49.10 Aligned_cols=98 Identities=9% Similarity=-0.152 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHhCCccH---HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc---hhhhhHHHHHHHHHhhccc
Q 045108 112 AIEVMIHSKALLLLSCDFA---TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS---EQAWSHRRWVINMISRNCS 185 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~---TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs---y~~W~hRrwll~~l~~~~~ 185 (425)
.++++.....++..+|++. .+|.....+.... ..+.+++..+..++..+|++ ..++.....+...++.
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~--- 91 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT---RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK--- 91 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC---
Confidence 4788999999999999998 7999999888877 47999999999999999999 7889888888877665
Q ss_pred hhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108 186 TLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS 220 (425)
Q Consensus 186 ~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~ 220 (425)
+++.+..+.++++.+|.+..++.-+..+-.
T Consensus 92 -----~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 92 -----NTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp -----HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 688999999999999999888776655543
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.18 E-value=0.0016 Score=54.08 Aligned_cols=92 Identities=5% Similarity=0.021 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
-++++.....+|.++|++.++|+.|+.+....+ .+++++..+..++..+|++...+..+..++..++.... ....+
T Consensus 24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~ 99 (127)
T 4gcn_A 24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQNDL 99 (127)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcCCH
Confidence 478999999999999999999999999998884 89999999999999999988766655555544432110 01237
Q ss_pred HHHHHHHHHHHHhcCC
Q 045108 192 ERESELVEKIAERSKM 207 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pk 207 (425)
++.++...++++.+|.
T Consensus 100 ~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 100 SLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhCcC
Confidence 8889999999998874
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.15 E-value=0.0013 Score=67.58 Aligned_cols=98 Identities=7% Similarity=0.014 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhh
Q 045108 147 PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQ 226 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~ 226 (425)
..+++++.....++..+|++..+|..+..++.+++. +++.+..+.++++.+|.+..+|..+..+...++.
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-- 89 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELDKKYIKGYYRRAASNMALGK-- 89 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Confidence 578999999999999999999999999999888765 6899999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 045108 227 VLNELKQSRNWSGLHVADNSCFHYHRRL 254 (425)
Q Consensus 227 ~~~EL~~~~~~i~~d~~N~SaW~yR~~l 254 (425)
+++.++..++.++.+|.+..+|.....+
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7899999999999999999999988766
No 142
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.04 E-value=0.0034 Score=50.25 Aligned_cols=86 Identities=10% Similarity=0.000 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIER 193 (425)
Q Consensus 114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (425)
+++.....++..+|++..+|.....++...+ .+++++..+..++..+|.+..+|.....++...+. +.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--------RAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------HHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--------HHH
Confidence 3677888999999999999999999888774 78999999999999999999999999988887765 678
Q ss_pred HHHHHHHHHHhcCCchh
Q 045108 194 ESELVEKIAERSKMNYR 210 (425)
Q Consensus 194 EL~~~~~~l~~~pkNY~ 210 (425)
.+..+.++++.+|.+-.
T Consensus 72 A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 72 ARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccccc
Confidence 88899999998886543
No 143
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.01 E-value=0.014 Score=52.75 Aligned_cols=119 Identities=11% Similarity=0.002 Sum_probs=91.5
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh--------CCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHH
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH--------SPKSEQAWSHRRWVINMISRNCSTLQWIIERESELV 198 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~--------~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~ 198 (425)
|....+|+....+....+ .+.+++.++..++.. +|....+|.....+....+. +.+.+.++
T Consensus 40 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~ 108 (283)
T 3edt_B 40 PDVATMLNILALVYRDQN---KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLC 108 (283)
T ss_dssp HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------HHHHHHHH
Confidence 677888888888888774 789999999999876 46666777777777665544 57777777
Q ss_pred HHHHHh--------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh--------cCCChhHHHHHHHHHHHh
Q 045108 199 EKIAER--------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL--------HVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 199 ~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~--------d~~N~SaW~yR~~ll~~l 258 (425)
.++++. +|.+..++.....+....+. +++.+..+.+.+.. +|.+..++.....+....
T Consensus 109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 777777 58888899888888877765 77888888888887 666667777777666553
No 144
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.97 E-value=0.011 Score=58.56 Aligned_cols=101 Identities=8% Similarity=-0.103 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHH----------------hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHH
Q 045108 112 AIEVMIHSKALLL----------------LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRW 175 (425)
Q Consensus 112 ~~~~L~~t~~lLl----------------~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrw 175 (425)
.++++.....+|. ++|.+..+|+.+..++...+ .+++++..++.+|..+|++..+|..+..
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4778888888888 88899999999999988874 7999999999999999999999999999
Q ss_pred HHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Q 045108 176 VINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMT 223 (425)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~ 223 (425)
++..+.+ +++.+..+.++++.+|.|-.++.....+...++
T Consensus 316 ~~~~~g~--------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 316 GWQGLKE--------YDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9988765 689999999999999999999988887776654
No 145
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.92 E-value=0.012 Score=46.87 Aligned_cols=97 Identities=3% Similarity=-0.137 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHH
Q 045108 151 DELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNE 230 (425)
Q Consensus 151 ~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~E 230 (425)
+.+..+..++..+|.++.+|.....+....+. +.+.+..+.++++.+|.+..+|.....+....+. +.+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ--------FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD--RAGA 72 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHH
Confidence 45778889999999999999999988877654 6889999999999999999999999999888775 6788
Q ss_pred HHHHHHHHhhcCCC--hhHHHHHHHHHHH
Q 045108 231 LKQSRNWSGLHVAD--NSCFHYHRRLMIW 257 (425)
Q Consensus 231 L~~~~~~i~~d~~N--~SaW~yR~~ll~~ 257 (425)
+..+.+.+..+|.+ ..+......++..
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 73 RQAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 89999999887754 3444443444433
No 146
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.85 E-value=0.013 Score=43.90 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=63.3
Q ss_pred ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCC
Q 045108 128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKM 207 (425)
Q Consensus 128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pk 207 (425)
.+..+|.....+.... ..+.+.+..+..++..+|.+..+|.....++...+. +++.+..+.++++.+|.
T Consensus 7 ~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCCC
Confidence 4566777777766665 367888888888888888888888888877776554 57788888888888888
Q ss_pred chhhhhHHHHHHHh
Q 045108 208 NYRAWNHRCWLVSF 221 (425)
Q Consensus 208 NY~AW~hR~wll~~ 221 (425)
+..+|.....+...
T Consensus 76 ~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 76 NAEAKQNLGNAKQK 89 (91)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 88888776665543
No 147
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.01 Score=46.13 Aligned_cols=69 Identities=3% Similarity=0.071 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108 129 FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (425)
Q Consensus 129 ~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (425)
...+|..+..+.... ..+.+++.....++..+|+++.+|..+..++..++. +++.+..+.++++.+|.+
T Consensus 3 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ---GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--------YTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhCCCc
Confidence 345666777666665 367888888888888888888888888877776654 577788888888888887
No 148
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.78 E-value=0.0071 Score=57.23 Aligned_cols=163 Identities=6% Similarity=-0.099 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHH
Q 045108 111 VAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVIN 178 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~ 178 (425)
..++++.....+|.+.|+. ..+++....+..... ..+++++.....++..+|+. ..+++....++.
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL--HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 3577889999999988765 567887888887730 37899999999999988765 355666666666
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHHhcCCchh-------hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHH
Q 045108 179 MISRNCSTLQWIIERESELVEKIAERSKMNYR-------AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYH 251 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~-------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR 251 (425)
.++. +.+.+..+.++++.+|.+.. +|...+.+...++. +...+..+++.+..+|+...+...+
T Consensus 170 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 170 LDGQ--------YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HTTC--------HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHHGGGCC---------HH
T ss_pred HhCC--------HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 6554 68999999999999998864 34444555555554 7889999999999999888766553
Q ss_pred HH--HHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108 252 RR--LMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREA 300 (425)
Q Consensus 252 ~~--ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neS 300 (425)
.. +...+ ... ....+.+.+...++++..+|.+..
T Consensus 240 ~l~~l~~~~-~~~--------------~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 240 FLKSLIDAV-NEG--------------DSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHH-HTT--------------CTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHH-HcC--------------CHHHHHHHHHHhccCCccHHHHHH
Confidence 22 12211 100 012366667766677776775433
No 149
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.61 E-value=0.0056 Score=48.28 Aligned_cols=73 Identities=8% Similarity=-0.021 Sum_probs=62.5
Q ss_pred hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108 125 LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (425)
Q Consensus 125 ~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (425)
.+|++..+|.....++... ..+++++..+..++..+|++..+|..+..++..++. +++.+..+.++++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH---DNASRALALFEELVETDPDYVGTYYHLGKLYERLDR--------TDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhh
Confidence 4899999999999998877 479999999999999999999999999999988765 67888889999888
Q ss_pred cCCc
Q 045108 205 SKMN 208 (425)
Q Consensus 205 ~pkN 208 (425)
.|++
T Consensus 71 ~~~~ 74 (100)
T 3ma5_A 71 AREE 74 (100)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7654
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.49 E-value=0.027 Score=44.49 Aligned_cols=97 Identities=7% Similarity=-0.084 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc-------hhhhhHHHHHHHHHhhcc
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS-------EQAWSHRRWVINMISRNC 184 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs-------y~~W~hRrwll~~l~~~~ 184 (425)
.++++.....++..+|++..+|.....+.... ..+++++..+..++..+|.+ ..+|.....+....+.
T Consensus 20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-- 94 (131)
T 1elr_A 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK-- 94 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhcc--
Confidence 47889999999999999999999999888777 47899999999999998887 7777777777766554
Q ss_pred chhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108 185 STLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS 220 (425)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~ 220 (425)
+++.+.++.++++.+| +-.++....-+..
T Consensus 95 ------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 95 ------YKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------HHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6888999999999998 6666555444443
No 151
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.49 E-value=0.061 Score=49.36 Aligned_cols=173 Identities=12% Similarity=0.017 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh--------CCCchhhhhHHHH
Q 045108 112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH--------SPKSEQAWSHRRW 175 (425)
Q Consensus 112 ~~~~L~~t~~lLl~--------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~--------~PKsy~~W~hRrw 175 (425)
.++++.....++.+ +|....+++....+....+ .+++.+..+..++.. +|....+|.....
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN---KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 46677777777774 7888889999988888774 789999999998876 4666677777777
Q ss_pred HHHHHhhccchhHHhHHHHHHHHHHHHHhc--------CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-------
Q 045108 176 VINMISRNCSTLQWIIERESELVEKIAERS--------KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL------- 240 (425)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~~--------pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~------- 240 (425)
+....+. +.+.+.++.++++.. |....+|.....+....+. +.+.++...+.+..
T Consensus 120 ~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 120 LYGKRGK--------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHTTTC--------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHcCc--------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence 6665543 567777777777663 6667788888888776665 67888888888887
Q ss_pred -cCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHH--hhcCCCccHHHHHHHHHH
Q 045108 241 -HVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLI--KRYVGREALWLHRRFLSL 310 (425)
Q Consensus 241 -d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I--~~~p~neSaW~yrr~Ll~ 310 (425)
++....+|.....+.... +. ..++...+++-++...+.- ...+.+...|.+...+..
T Consensus 190 ~~~~~~~~~~~la~~~~~~-g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQ-GK------------FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 249 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHH-TC------------HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-CC------------HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 566666677666665543 11 1222233333333222211 235667777777655443
No 152
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.042 Score=50.47 Aligned_cols=131 Identities=7% Similarity=-0.046 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhC--------CCchhhhhHHHH
Q 045108 112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHS--------PKSEQAWSHRRW 175 (425)
Q Consensus 112 ~~~~L~~t~~lLl~--------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~--------PKsy~~W~hRrw 175 (425)
.++++.....++.+ +|....+++....+.... ..+++++.++..++... |....+|.....
T Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 46778888888877 577788888888888776 47899999999998763 556667777766
Q ss_pred HHHHHhhccchhHHhHHHHHHHHHHHHHh--------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-------
Q 045108 176 VINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL------- 240 (425)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~------- 240 (425)
+....+. +.+.+.++.++++. +|....+|.....+....+. +++.+..+.+.+..
T Consensus 162 ~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 162 LCQNQGK--------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp HHHTTTC--------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCC--------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCC
Confidence 6665543 67888888888887 77777888888888877765 66777777777753
Q ss_pred --cCCChhHHHHHHHHH
Q 045108 241 --HVADNSCFHYHRRLM 255 (425)
Q Consensus 241 --d~~N~SaW~yR~~ll 255 (425)
++.+...|.....+.
T Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 232 SVDDENKPIWMHAEERE 248 (311)
T ss_dssp ------CCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHH
Confidence 344445555544443
No 153
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.29 E-value=0.037 Score=41.28 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=67.9
Q ss_pred CchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 165 KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 165 Ksy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
.+..+|.....+...... +.+.+..+.++++.+|.+..+|.....+....+. +++.+..+.+.+..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCC
Confidence 345667666666555443 6889999999999999999999999999887765 788999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 045108 245 NSCFHYHRRLMIW 257 (425)
Q Consensus 245 ~SaW~yR~~ll~~ 257 (425)
..+|..+..+...
T Consensus 77 ~~~~~~l~~~~~~ 89 (91)
T 1na3_A 77 AEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999887766543
No 154
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.22 E-value=0.015 Score=44.71 Aligned_cols=59 Identities=8% Similarity=-0.000 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHhhCCCchh-hhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhH
Q 045108 148 ILMDELRLSAVVLSHSPKSEQ-AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNH 214 (425)
Q Consensus 148 ~l~~EL~~~~~lL~~~PKsy~-~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~h 214 (425)
.+.+++..+..++..+|++.. +|..+..++..++. +++.+..+.++++.+|.+..+|.+
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD--------WQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 456666666666666666666 66666666555443 456666666666666666666543
No 155
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.18 E-value=0.015 Score=45.80 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=61.4
Q ss_pred hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108 162 HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241 (425)
Q Consensus 162 ~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d 241 (425)
.+|+++.+|.....++...+. +++.+..+.++++.+|.+..+|...+.+...++. +++.++.+++.+...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN--------ASRALALFEELVETDPDYVGTYYHLGKLYERLDR--TDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence 579999999999998887665 6899999999999999999999999999988876 678888889888876
Q ss_pred CCC
Q 045108 242 VAD 244 (425)
Q Consensus 242 ~~N 244 (425)
+.+
T Consensus 72 ~~~ 74 (100)
T 3ma5_A 72 REE 74 (100)
T ss_dssp HHH
T ss_pred hcC
Confidence 543
No 156
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.16 E-value=0.088 Score=47.30 Aligned_cols=130 Identities=8% Similarity=-0.039 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh--------CCCchhhhhHHHH
Q 045108 112 AIEVMIHSKALLLL--------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH--------SPKSEQAWSHRRW 175 (425)
Q Consensus 112 ~~~~L~~t~~lLl~--------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~--------~PKsy~~W~hRrw 175 (425)
.++++.....++.+ +|....+++....+.... ..+++++..+..++.. +|....++.....
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888888877 577788888888888877 4789999999999887 5777788888887
Q ss_pred HHHHHhhccchhHHhHHHHHHHHHHHHHh--------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-------
Q 045108 176 VINMISRNCSTLQWIIERESELVEKIAER--------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL------- 240 (425)
Q Consensus 176 ll~~l~~~~~~~~~~~~~EL~~~~~~l~~--------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~------- 240 (425)
+....+. +++.+.++.++++. +|.+..++.....+....+. +++.+....+.+..
T Consensus 136 ~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 136 LCQNQGK--------AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHTTTC--------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHcCC--------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCC
Confidence 7776654 67888888888888 88888889888888877765 67778888887775
Q ss_pred --cCCChhHHHHHHHH
Q 045108 241 --HVADNSCFHYHRRL 254 (425)
Q Consensus 241 --d~~N~SaW~yR~~l 254 (425)
++.+...|.....+
T Consensus 206 ~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 206 SVNGDNKPIWMHAEER 221 (283)
T ss_dssp SCCSSCCCHHHHHHHH
T ss_pred CcchhHHHHHHHHHHH
Confidence 55566666655443
No 157
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.054 Score=41.88 Aligned_cols=83 Identities=1% Similarity=-0.139 Sum_probs=65.2
Q ss_pred chhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC-
Q 045108 166 SEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD- 244 (425)
Q Consensus 166 sy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N- 244 (425)
+..+|..+..+....+. +.+.+..+.++++.+|.+..+|..++.+...++. +.+.++.+++.+..+|.+
T Consensus 3 ~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL--------YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTT
T ss_pred hHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcc
Confidence 34556666655554433 7899999999999999999999999999988876 789999999999999999
Q ss_pred -----hhHHHHHHHHHHHh
Q 045108 245 -----NSCFHYHRRLMIWN 258 (425)
Q Consensus 245 -----~SaW~yR~~ll~~l 258 (425)
..++..+..+...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~ 91 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAV 91 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 55666555555443
No 158
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.87 E-value=0.024 Score=43.60 Aligned_cols=58 Identities=9% Similarity=-0.090 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhCCccHH-HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH
Q 045108 112 AIEVMIHSKALLLLSCDFAT-AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH 172 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~T-aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h 172 (425)
.++++.....++..+|++.. +|..+..++...+ .+++++..+..++..+|++..+|.+
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG---DWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 47799999999999999999 9999999988774 7899999999999999999999865
No 159
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.82 E-value=1.1 Score=40.80 Aligned_cols=163 Identities=6% Similarity=-0.146 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHh
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWI 190 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~ 190 (425)
.++++.....++. |.+..++.....+..... ...++++.+.+...++..+ +..+|.....+...-.. ....
T Consensus 22 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~----~~~~ 93 (273)
T 1ouv_A 22 FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQG----VSQN 93 (273)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS----SCCC
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCC----cccC
Confidence 4678888888877 788899999888887711 1247899999999999875 78888888877765110 0113
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHh----hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccC
Q 045108 191 IERESELVEKIAERSKMNYRAWNHRCWLVSF----MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQ 266 (425)
Q Consensus 191 ~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~ 266 (425)
+.+.+..+.++++.+ +..++.....+... .+ +.++.+.+..+.++.+ +..++.....+...-...
T Consensus 94 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~----- 162 (273)
T 1ouv_A 94 TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR--DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGT----- 162 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS-----
T ss_pred HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc--CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCC-----
Confidence 678888999998874 78888888888876 44 3788899999999876 667777776665541100
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHH
Q 045108 267 DNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRR 306 (425)
Q Consensus 267 ~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr 306 (425)
..-+++.+.+..+.+.. ++..+++..-
T Consensus 163 -----------~~~~~~A~~~~~~a~~~--~~~~a~~~lg 189 (273)
T 1ouv_A 163 -----------PKDLKKALASYDKACDL--KDSPGCFNAG 189 (273)
T ss_dssp -----------CCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 01256667777777765 3455555543
No 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.72 E-value=0.1 Score=50.38 Aligned_cols=118 Identities=7% Similarity=-0.066 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHhCCccH----HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------CCCchhhhhHHHHHHHHHh
Q 045108 112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------SPKSEQAWSHRRWVINMIS 181 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~----TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------~PKsy~~W~hRrwll~~l~ 181 (425)
.++++.....++.++|++. .+|+....+.... ..+++.+..+..++.. +|....+|.....+....+
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL---GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4789999999999999987 5788888887776 4789999999999886 5777788888888777665
Q ss_pred hccchhHHhHHHHHHHHHHHHHh------cCCchhhhhHHHHHHHhhch---------------hhHHHHHHHHHHHHhh
Q 045108 182 RNCSTLQWIIERESELVEKIAER------SKMNYRAWNHRCWLVSFMTR---------------EQVLNELKQSRNWSGL 240 (425)
Q Consensus 182 ~~~~~~~~~~~~EL~~~~~~l~~------~pkNY~AW~hR~wll~~~~~---------------~~~~~EL~~~~~~i~~ 240 (425)
. +.+.+..+.++++. +|....++.....+....+. ..++..+.++.+.+..
T Consensus 141 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 141 R--------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp C--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4 56777777777777 56666677777777766543 0155666666666554
No 161
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.70 E-value=0.17 Score=48.19 Aligned_cols=101 Identities=6% Similarity=-0.098 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhCCccH----HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------CCCchhhhhHHHHHHHHHh
Q 045108 112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------SPKSEQAWSHRRWVINMIS 181 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~----TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------~PKsy~~W~hRrwll~~l~ 181 (425)
.++++.....++.++|++. .+|.....+.... ..+.+.+..+..++.. .|....+|.....+....+
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL---HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 4778899999999999984 5777777777766 4788899988888765 3444566777776666554
Q ss_pred hccchhHHhHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhc
Q 045108 182 RNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMT 223 (425)
Q Consensus 182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~ 223 (425)
. +.+.+.++.++++..|++-. ++.....+....+
T Consensus 102 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 102 N--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp C--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 4 57777788888887776533 6666666665544
No 162
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.41 E-value=1.1 Score=40.56 Aligned_cols=149 Identities=4% Similarity=-0.154 Sum_probs=105.6
Q ss_pred CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108 126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (425)
Q Consensus 126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (425)
+|.+..++.....+..... .+++++.++..++. |.+..+|.....+...-.. ....+++.+.+..++++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~----~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK---DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQG----VEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSS----SCCCHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCC----cCCCHHHHHHHHHHHHHCC
Confidence 5788889988888887773 78999999999998 7888898888777665110 0113688899999999886
Q ss_pred CCchhhhhHHHHHHHh----hchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHH
Q 045108 206 KMNYRAWNHRCWLVSF----MTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVW 281 (425)
Q Consensus 206 pkNY~AW~hR~wll~~----~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (425)
+..+|.....+... .+ .+.+.+.+.++.+..+ +..++..+..+...-.+. ..-+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~----------------~~~~ 130 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVV----------------TRDF 130 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSS----------------CCCH
T ss_pred --CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCc----------------ccCH
Confidence 78888888888776 44 3778899999999874 778888887776541100 0125
Q ss_pred HHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 282 KEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 282 ~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
++.+.+..+++..+ +..++...-.
T Consensus 131 ~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 131 KKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 66677777887765 4556655433
No 163
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.13 E-value=0.38 Score=43.98 Aligned_cols=101 Identities=6% Similarity=-0.098 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHhCCccH----HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh------CCCchhhhhHHHHHHHHHh
Q 045108 112 AIEVMIHSKALLLLSCDFA----TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH------SPKSEQAWSHRRWVINMIS 181 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~----TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~------~PKsy~~W~hRrwll~~l~ 181 (425)
.++++.....++..+|++. .++.....+.... ..+.+.+..+..++.. .|....+|.....+....+
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL---HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 4789999999999999984 6777777777766 4788999999888775 4445566666666666554
Q ss_pred hccchhHHhHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhc
Q 045108 182 RNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMT 223 (425)
Q Consensus 182 ~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~ 223 (425)
. +.+.+..+.++++..++.-. ++.....+....+
T Consensus 98 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 98 N--------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp C--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred C--------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 3 57778888888887665533 6666666665544
No 164
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.10 E-value=0.29 Score=46.20 Aligned_cols=164 Identities=5% Similarity=-0.100 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~ 179 (425)
.++++.....++.+.+.. ..+++....+.... ..+.+++..+..++...++. ..+++....+...
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL---QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 466777777777776533 44566666666665 36788888888888764432 2334444444433
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRR 253 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ 253 (425)
+ .+++.+.+..++++..|.. ..++.....+...++. +.+.+..+++.+...+.+..-+..-..
T Consensus 129 -g--------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 129 -L--------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp -T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -C--------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 2 3688889999999888764 3566666777666664 788899999999987765442211111
Q ss_pred HHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 254 LMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 254 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
.+...... ....-+.+.+.+..+.+ .+|++......
T Consensus 198 ~~~~g~~~--------------~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 198 CIAQVLVQ--------------LHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHH--------------HHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHH--------------HHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 11110000 00012567788888999 89987765543
No 165
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.06 E-value=0.27 Score=47.48 Aligned_cols=133 Identities=6% Similarity=-0.129 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHh------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-------hhhhHHHHHHH
Q 045108 112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-------QAWSHRRWVIN 178 (425)
Q Consensus 112 ~~~~L~~t~~lLl~------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-------~~W~hRrwll~ 178 (425)
.++++.....++.+ ++....+++..+.+.... ..+.+++.....++...++.. .+++....+..
T Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM---KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 47788888888887 334567888888888777 478999999999998765553 34444455555
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHHhcCCch------hhhhHHHHHHHhhchhhHHHHHHHHHHHHh-----hc-CCChh
Q 045108 179 MISRNCSTLQWIIERESELVEKIAERSKMNY------RAWNHRCWLVSFMTREQVLNELKQSRNWSG-----LH-VADNS 246 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY------~AW~hR~wll~~~~~~~~~~EL~~~~~~i~-----~d-~~N~S 246 (425)
.++. +++.+....++++..+++- .++...+++...++. ++..+.+..+.+. .+ |....
T Consensus 196 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 196 DLKQ--------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HhcC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHH
Confidence 4443 6888888888888876554 477778888877765 7888899999888 45 66666
Q ss_pred HHHHHHHHHHH
Q 045108 247 CFHYHRRLMIW 257 (425)
Q Consensus 247 aW~yR~~ll~~ 257 (425)
++.....+...
T Consensus 266 ~~~~l~~~~~~ 276 (383)
T 3ulq_A 266 AYFLITQIHYK 276 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766655
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.72 E-value=0.41 Score=45.57 Aligned_cols=120 Identities=9% Similarity=-0.064 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHh------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh------hhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ------AWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~------~W~hRrwll~~ 179 (425)
.++++.....++.+ .|....+++....+.... ..+++.+..+..++...|+... +|.....+...
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 45666777777666 555567788888877776 4789999999999987766554 66666666665
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
.+. +.+.+..+.++++..|++ ..++.....+....+. +.+.+.++.+.+...+..
T Consensus 240 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 240 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred cCC--------hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHhc
Confidence 543 678888888888888776 5666677777666554 677788888887765544
No 167
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.40 E-value=0.64 Score=44.69 Aligned_cols=119 Identities=4% Similarity=-0.077 Sum_probs=86.6
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch----hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHH
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE----QAWSHRRWVINMISRNCSTLQWIIERESELVEKIA 202 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy----~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l 202 (425)
+.....+..+...+... ..+.+++.++..++..+|++. .+|.....+....+. +++.+.++.+++
T Consensus 45 ~~~~~~l~~~g~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNA---GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD--------YNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHH
Confidence 44445555566666655 478999999999999999987 467677766666544 577788888888
Q ss_pred Hh------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh------cCCChhHHHHHHHHHHHh
Q 045108 203 ER------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL------HVADNSCFHYHRRLMIWN 258 (425)
Q Consensus 203 ~~------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~------d~~N~SaW~yR~~ll~~l 258 (425)
+. +|....+|.....+....+. +...+..+.+.+.. ++....++..+..+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 77 68888899999888887775 66777777777776 455555777766666543
No 168
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=94.21 E-value=0.39 Score=43.84 Aligned_cols=120 Identities=9% Similarity=-0.069 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHh------CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh------hhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLL------SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ------AWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~------npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~------~W~hRrwll~~ 179 (425)
.++++.....++.+ .|....++.....+.... ..+++.+..+..++...|+... +|.....+...
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL---GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 45566666666655 444456777777777666 4789999999999887665443 66666666665
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
.+. +.+.+.++.++++..+++ ..++.....+....+. +.+.+.+..+.+...+..
T Consensus 236 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 236 LGE--------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHH
T ss_pred cCC--------HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc
Confidence 543 577888888888877766 5566666666666554 677788888887765443
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.00 E-value=0.46 Score=45.56 Aligned_cols=166 Identities=7% Similarity=-0.124 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHH-------HHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhH-HH---------
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSR-------KLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSH-RR--------- 174 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~R-------r~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~h-Rr--------- 174 (425)
...+++....++.++|+...+|+-| ..+|.... ...+.+......+...|.....|.. -.
T Consensus 22 ~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~---r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 22 EARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW---YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH---HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred HHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH---HHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 5779999999999999999999999 77777663 2345566666777777777666665 11
Q ss_pred -----------HHHHHHhhccc-----------hh--------------HHhHHHHHHHHHHHHHhcCCch---hhhhHH
Q 045108 175 -----------WVINMISRNCS-----------TL--------------QWIIERESELVEKIAERSKMNY---RAWNHR 215 (425)
Q Consensus 175 -----------wll~~l~~~~~-----------~~--------------~~~~~~EL~~~~~~l~~~pkNY---~AW~hR 215 (425)
-++...+.... .+ ...|.+.+..+..+... |.++ .++.+.
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~~~L 177 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAGVAH 177 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHHHHH
Confidence 11111111000 00 01234444444433332 2332 367777
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHhhc--CC-ChhHHHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHH
Q 045108 216 CWLVSFMTREQVLNELKQSRNWSGLH--VA-DNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLI 292 (425)
Q Consensus 216 ~wll~~~~~~~~~~EL~~~~~~i~~d--~~-N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I 292 (425)
+-++..++. +.+.+....+.+... |. ...++.++..++.++ +. .++.....++++
T Consensus 178 G~al~~LG~--~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr-------------------~deA~~~l~~a~ 235 (282)
T 4f3v_A 178 GVAAANLAL--FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GN-------------------ESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TC-------------------HHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CC-------------------HHHHHHHHHHHH
Confidence 777777665 677788888877544 44 335788888777764 21 456677788888
Q ss_pred hhcCCCccHHHH
Q 045108 293 KRYVGREALWLH 304 (425)
Q Consensus 293 ~~~p~neSaW~y 304 (425)
..+|. .-+|..
T Consensus 236 a~~P~-~~~~~a 246 (282)
T 4f3v_A 236 TTHPE-PKVAAA 246 (282)
T ss_dssp HHSCC-HHHHHH
T ss_pred hcCCc-HHHHHH
Confidence 99998 655544
No 170
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.65 E-value=1.3 Score=44.15 Aligned_cols=122 Identities=9% Similarity=-0.013 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC--C-c-----ccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhc
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ--L-L-----PILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRN 183 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~--~-~-----~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~ 183 (425)
..+++.+.+.++.++|++..||-.+..+..... . . ..+..++. -...+...|..+.+ |..-.+..+..
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~--~~alal~~l~~- 290 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSII--YQIKAVSALVK- 290 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHH--HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHH--HHHHHHHHHhC-
Confidence 466777778888888888777765543221100 0 0 01112222 11122344554433 33322222222
Q ss_pred cchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCh
Q 045108 184 CSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADN 245 (425)
Q Consensus 184 ~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~ 245 (425)
..++..+..+.+++..+| |..+|.-.+|+....+. +++.++.+.+.+.++|++.
T Consensus 291 -----gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~--~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 291 -----GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM--NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp -----TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCSHH
T ss_pred -----CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCcC
Confidence 236888899999999996 57788888888887776 6888999999999999874
No 171
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=92.16 E-value=4.2 Score=43.59 Aligned_cols=164 Identities=9% Similarity=-0.047 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHH-HHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDEL-RLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL-~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++...++.+|..+|.++.+|..-.+++...+ ...+.. .++..++..+|++..+|-.--.+....+. +
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~---~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~--------~ 394 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN---TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK--------I 394 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS---CCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------H
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------H
Confidence 34567899999999999999998888776653 345675 88899999999999999766665555443 2
Q ss_pred HHHHHHHHHHHHh-----------cCC-----------chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh-cCCChhHH
Q 045108 192 ERESELVEKIAER-----------SKM-----------NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL-HVADNSCF 248 (425)
Q Consensus 192 ~~EL~~~~~~l~~-----------~pk-----------NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~-d~~N~SaW 248 (425)
+..-++.+++++. .|. +-.+|..-.-+..+.+. +...-+...+.++. .......|
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHH
Confidence 3333344444432 243 23467765544444332 34555566666665 33445555
Q ss_pred HHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHH-HHHHHH
Q 045108 249 HYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALW-LHRRFL 308 (425)
Q Consensus 249 ~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW-~yrr~L 308 (425)
-.-..+-.+..+ + .+........++...|++...| .|..++
T Consensus 473 i~~A~lE~~~~~--------d-----------~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 473 LENAYIEYHISK--------D-----------TKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHTTTS--------C-----------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------C-----------HHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 433322222100 0 1223333455666678888888 454443
No 172
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.81 E-value=4.8 Score=37.08 Aligned_cols=134 Identities=8% Similarity=-0.052 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHhCCccHH----H-HHH-HHHHHHccCCcccHHHHHHHHHHHHhhCCCchh------hhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFAT----A-WNS-RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ------AWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~T----a-Wn~-Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~------~W~hRrwll~~ 179 (425)
.++++.....++...+.... + |.+ .+.+... ...+++++.....++...++... +++.-..+...
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK---KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 46788888888887765544 2 222 2222222 24789999999999997666554 34444444443
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHh-------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC------hh
Q 045108 180 ISRNCSTLQWIIERESELVEKIAER-------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD------NS 246 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~-------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N------~S 246 (425)
.+. +++.+.+..++++. .+....++...+.+....+. +++.+.++.+.+...+.. -.
T Consensus 168 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 168 NGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred cCC--------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 332 67778888888742 23333477777888777665 788899998888866443 34
Q ss_pred HHHHHHHHHHHh
Q 045108 247 CFHYHRRLMIWN 258 (425)
Q Consensus 247 aW~yR~~ll~~l 258 (425)
++..+..+...+
T Consensus 238 ~~~~lg~~~~~~ 249 (293)
T 3u3w_A 238 LYYQRGECLRKL 249 (293)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 566666665543
No 173
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.34 E-value=1 Score=35.27 Aligned_cols=74 Identities=12% Similarity=-0.032 Sum_probs=41.5
Q ss_pred CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108 126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (425)
Q Consensus 126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (425)
+|++..+|..+..++.-..+.....+...++..+|..+|++..++.....+..+.+. +.+.+....++++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~--------y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR--------FQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC
Confidence 456666666666555321111223556666666666666666666665555444332 566666666666666
Q ss_pred CC
Q 045108 206 KM 207 (425)
Q Consensus 206 pk 207 (425)
|.
T Consensus 74 p~ 75 (93)
T 3bee_A 74 DP 75 (93)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 174
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.77 E-value=8 Score=38.38 Aligned_cols=156 Identities=9% Similarity=-0.070 Sum_probs=94.9
Q ss_pred HHHHhCCccHHHHHH--HHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhcc--c-hhHHhHHHHH
Q 045108 121 ALLLLSCDFATAWNS--RKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNC--S-TLQWIIERES 195 (425)
Q Consensus 121 ~lLl~npe~~TaWn~--Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~--~-~~~~~~~~EL 195 (425)
.+...-|++.+||.. |.+-+........+.+.+.+++.++...|.+..+|..+-++.-.+.... . .....+..++
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 345667888888875 4332222212356789999999999999999999998887665333221 1 0111223333
Q ss_pred HHHHHHHHhcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchh
Q 045108 196 ELVEKIAERSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFV 275 (425)
Q Consensus 196 ~~~~~~l~~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~ 275 (425)
.-+ .++..+|....+ |....+..+....++..+...++.+.++++ .-+|..+.++.. +.+
T Consensus 265 ~a~-~a~~~~~~~a~~--~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~-~~G--------------- 324 (372)
T 3ly7_A 265 DNI-VTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE-MKG--------------- 324 (372)
T ss_dssp HHH-HTCGGGTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-HTT---------------
T ss_pred HHH-HhcccCCcCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HCC---------------
Confidence 311 234556665444 433333222223478899999999999853 344444444332 212
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCcc
Q 045108 276 ETYQVWKEELDWNESLIKRYVGREA 300 (425)
Q Consensus 276 ~~~~~~~~EL~~~~~~I~~~p~neS 300 (425)
.+++.++...+++.++|+.+.
T Consensus 325 ----~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 325 ----MNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp ----CHHHHHHHHHHHHHHSCSHHH
T ss_pred ----CHHHHHHHHHHHHhcCCCcCh
Confidence 267778888999999999863
No 175
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=90.74 E-value=1.6 Score=41.92 Aligned_cols=117 Identities=6% Similarity=-0.099 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch------hhhhHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCD-------FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE------QAWSHRRWVIN 178 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe-------~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy------~~W~hRrwll~ 178 (425)
.++++.....++.+.++ ...+++..+.+.... +.+++++.....++...|+.. .+++...++..
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL---KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 46778888888887443 345777777777776 478999999999998766554 46777777776
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHH-----hc-CCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108 179 MISRNCSTLQWIIERESELVEKIAE-----RS-KMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~-----~~-pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d 241 (425)
.++. +++.+..+.++++ .+ |....++...+.+....+. ++..+.+.++.+...
T Consensus 236 ~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 236 SQSQ--------YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHSKGMAYS 294 (383)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred HCCC--------HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 6654 6888888999988 56 7788888888888877765 677888888887764
No 176
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=89.81 E-value=12 Score=34.35 Aligned_cols=133 Identities=11% Similarity=-0.054 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHhCCccHH-----HHHH-HHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFAT-----AWNS-RKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~T-----aWn~-Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~ 179 (425)
.+++++....++...|.... .|.+ ...+.... ..+++++.....+|...++. ..+++....+...
T Consensus 91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK---VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 47788888888888776432 2322 22333333 47899999999999877666 3466666666665
Q ss_pred HhhccchhHHhHHHHHHHHHHHH---HhcCCch----hhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC------hh
Q 045108 180 ISRNCSTLQWIIERESELVEKIA---ERSKMNY----RAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD------NS 246 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l---~~~pkNY----~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N------~S 246 (425)
.+. +++.+.++.+++ +..|.+. .++...+.+....+. +++.+.++++.+...... ..
T Consensus 168 ~~~--------~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 168 NGY--------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred cCC--------HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 543 678888888888 5566543 577778888877665 788899998888765321 23
Q ss_pred HHHHHHHHHHH
Q 045108 247 CFHYHRRLMIW 257 (425)
Q Consensus 247 aW~yR~~ll~~ 257 (425)
++.....+...
T Consensus 238 ~~~~lg~~y~~ 248 (293)
T 2qfc_A 238 LYYQRGECLRK 248 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555544444
No 177
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.31 E-value=2.3 Score=33.10 Aligned_cols=55 Identities=11% Similarity=-0.060 Sum_probs=49.7
Q ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc
Q 045108 109 DTVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS 166 (425)
Q Consensus 109 ~~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs 166 (425)
+..++++......+|.++|++..++...+...... +.+++++.....+|..+|.+
T Consensus 22 ~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~---g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 22 QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS---FRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Confidence 34578999999999999999999999999888777 48999999999999999993
No 178
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=88.62 E-value=3.7 Score=38.37 Aligned_cols=124 Identities=7% Similarity=-0.059 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCD------FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe------~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~ 179 (425)
.++++.....+|.+.++ ...+++....+... + .+++++.....++...|+. ..+++....++..
T Consensus 92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g---~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L---DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 35677777777777432 23566666666655 4 7899999999999877654 3556666666655
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHHHH
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCFHY 250 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~y 250 (425)
++. +.+.+..+.++++..|++-. ++.....+...++ .+...+..+++.+ .+|........
T Consensus 168 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 168 QQK--------FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA--DYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred cCC--------HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 544 68899999999998876643 3333333333333 3788899999999 99987655443
No 179
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=88.44 E-value=5.8 Score=36.55 Aligned_cols=115 Identities=17% Similarity=-0.012 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHccCCcccHHHHHHHHHHHH---hhCCCch----hhhhHHHHHH
Q 045108 111 VAIEVMIHSKALLLLSCDF------ATAWNSRKLIVSNKQLLPILMDELRLSAVVL---SHSPKSE----QAWSHRRWVI 177 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~------~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL---~~~PKsy----~~W~hRrwll 177 (425)
..++++.....+|.+.+.. ..+++..+.+.... ..+++++.....++ ...|... .+++....+.
T Consensus 130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 3467888888888765544 56888888888776 47899999999998 5666643 5777777777
Q ss_pred HHHhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHH-HHHHHHHH
Q 045108 178 NMISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNE-LKQSRNWS 238 (425)
Q Consensus 178 ~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~E-L~~~~~~i 238 (425)
..++. +++.+.++.++++..++. ..++...+.+...++. .++. ..+.++.+
T Consensus 207 ~~~~~--------y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 207 YLDSR--------YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY--EEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred HHHhh--------HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHH
Confidence 76654 688888888888876431 4566667777766654 3444 44455544
No 180
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.27 E-value=10 Score=36.15 Aligned_cols=153 Identities=5% Similarity=-0.193 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHhC------CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch-------hhhhHHHHHHH
Q 045108 112 AIEVMIHSKALLLLS------CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE-------QAWSHRRWVIN 178 (425)
Q Consensus 112 ~~~~L~~t~~lLl~n------pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy-------~~W~hRrwll~ 178 (425)
.++++.....++.+. |....+++..+.+.... ..+..++.....++...++.. .+++....+..
T Consensus 117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM---KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 467888888887663 33455666677777666 478999999999998765533 23334444444
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHHhcCC------chhhhhHHHHHHHhhchhhHHHHHHHHHHHHh-----hcCCChhH
Q 045108 179 MISRNCSTLQWIIERESELVEKIAERSKM------NYRAWNHRCWLVSFMTREQVLNELKQSRNWSG-----LHVADNSC 247 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pk------NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~-----~d~~N~Sa 247 (425)
.++. +++.+....++++..++ ...++...+++....+. ++..+.+..+.+. .+|....+
T Consensus 194 ~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 194 DFKH--------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--DQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4332 57777777777775432 12355666777766654 6788888888888 77777666
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCC
Q 045108 248 FHYHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVG 297 (425)
Q Consensus 248 W~yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~ 297 (425)
+.....+.... + -+++.+.+..+.+...+.
T Consensus 264 ~~~la~~~~~~-g-------------------~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 264 LFGLSWTLCKA-G-------------------QTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHT-T-------------------CHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHC-C-------------------CHHHHHHHHHHHHHHHHH
Confidence 66666665543 1 156777888888887654
No 181
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=86.67 E-value=3.4 Score=38.12 Aligned_cols=116 Identities=16% Similarity=-0.032 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhCCccH------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhh-------CCCchhhhhHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFA------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSH-------SPKSEQAWSHRRWVIN 178 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~-------~PKsy~~W~hRrwll~ 178 (425)
.++++.....+|.+.+... .+++.-+.+.... ..+++++.....+|.. .+....+++....+..
T Consensus 131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 3u3w_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4778889999998654432 3677777777666 4789999999999852 2223356777777776
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHh
Q 045108 179 MISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSG 239 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~ 239 (425)
.++. +++.+.++.++++..+++ -.++...+.+...++.. .++.++++.+.+.
T Consensus 208 ~~~~--------y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 208 LDSR--------YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYKKASF 265 (293)
T ss_dssp HTTC--------HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHH
T ss_pred HHhH--------HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHH
Confidence 6654 688889999999877655 46788888888877631 4567777777665
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=86.10 E-value=14 Score=30.90 Aligned_cols=104 Identities=5% Similarity=-0.147 Sum_probs=69.6
Q ss_pred hCC-ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHh------hCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108 125 LSC-DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLS------HSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (425)
Q Consensus 125 ~np-e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~------~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (425)
-+| ....+++....+.... ..+.+.+..+..++. ..|....++.....+....+. +++.+..
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~ 88 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFM---DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------WDAARRC 88 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence 355 6677888888877766 478999999999888 444455666666666665544 5677777
Q ss_pred HHHHHHh---cC----CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108 198 VEKIAER---SK----MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241 (425)
Q Consensus 198 ~~~~l~~---~p----kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d 241 (425)
+.++++. .+ ..-.++.....+....+. +++.+..+.+.+...
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence 7777776 33 223455666666666554 667777777777543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=84.45 E-value=8 Score=30.49 Aligned_cols=116 Identities=9% Similarity=-0.039 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHhCCccH------HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFA------TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVINM 179 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~------TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~~ 179 (425)
.++++.....++.+.++.. .+++....+.... ..+.+.+.+...++...++. ..++.....+...
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL---GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3566666766666655433 3666666666666 47899999999988865543 3445555555544
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGL 240 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~ 240 (425)
.+. +++.+..+.++++..++. ..++.....+....+ .+.+.++++.+.+..
T Consensus 102 ~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 102 LQD--------YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG--NHDQAMHFAEKHLEI 158 (164)
T ss_dssp TTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred Hhh--------HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence 433 566777777777654332 122333333333333 255666666666554
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=81.83 E-value=10 Score=36.02 Aligned_cols=118 Identities=5% Similarity=-0.125 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc--hhhhhHHHHHHHHHhhccchhHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS--EQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs--y~~W~hRrwll~~l~~~~~~~~~ 189 (425)
.+++.+....++..+|++. +...|..+.... ..+.+.+..++.+....+.. ..++.+...++..++.
T Consensus 118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~---~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~------- 186 (282)
T 4f3v_A 118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAA---ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL------- 186 (282)
T ss_dssp HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT---TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc---CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC-------
Confidence 3677888888888899888 888888777766 47899999988776543222 2478888888888775
Q ss_pred hHHHHHHHHHHHHHhc--CC-chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 045108 190 IIERESELVEKIAERS--KM-NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA 243 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~--pk-NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~ 243 (425)
+.+.+....+++... |. .-.++.++..++..++. .++......+++..+|.
T Consensus 187 -~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 187 -FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCc
Confidence 688999999998654 66 44699999999999987 57889999999999997
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=80.46 E-value=19 Score=28.18 Aligned_cols=98 Identities=9% Similarity=-0.053 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCch------hhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh
Q 045108 131 TAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSE------QAWSHRRWVINMISRNCSTLQWIIERESELVEKIAER 204 (425)
Q Consensus 131 TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy------~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~ 204 (425)
.+++....+.... ..+.+.+.....++...++.. .++.....+....+. +.+.+.++.++++.
T Consensus 10 ~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 10 RAFGNLGNTHYLL---GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------FETASEYYKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence 3455556555555 468889999988888765543 245555555544433 57777888888777
Q ss_pred cCCc------hhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108 205 SKMN------YRAWNHRCWLVSFMTREQVLNELKQSRNWSGLH 241 (425)
Q Consensus 205 ~pkN------Y~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d 241 (425)
.++. ..++.....+....+. +++.+..+.+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 79 ARQLKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence 6553 4455566666655554 667777777777653
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=79.68 E-value=30 Score=30.05 Aligned_cols=163 Identities=6% Similarity=-0.175 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHH
Q 045108 114 EVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIER 193 (425)
Q Consensus 114 ~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~ 193 (425)
+++++...+... .+..++..-..+.... .++.+.+.++..++.. .++.++..-..+... . .+.....+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~----g~~~~~~~ 71 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSS---GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-N----PQQADYPQ 71 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-S----TTSCCHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-C----CCCCCHHH
Confidence 345555555544 6788888888877765 4789999999999875 577777776666543 2 11224688
Q ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhc--hhhHHHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHhhccccccCCCC
Q 045108 194 ESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLNELKQSRNWSGLHVA--DNSCFHYHRRLMIWNLEGFCHIQDNN 269 (425)
Q Consensus 194 EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~~~i~~d~~--N~SaW~yR~~ll~~l~~~~~~~~~~~ 269 (425)
.+.+..++++ +.+..|+..-..+...-. ..++...+.+..+.++.+++ +-.++.....+...-.+.
T Consensus 72 A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~-------- 141 (212)
T 3rjv_A 72 ARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG-------- 141 (212)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS--------
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC--------
Confidence 8888988865 567788888777765411 23578899999999998884 467888877776542110
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHH
Q 045108 270 SSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRF 307 (425)
Q Consensus 270 ~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~ 307 (425)
..-+++.+.+..+.+.. |++..+.+..-.
T Consensus 142 --------~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 142 --------PEDDVKASEYFKGSSSL-SRTGYAEYWAGM 170 (212)
T ss_dssp --------SCCHHHHHHHHHHHHHT-SCTTHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 01256778888888887 666666655433
No 187
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=76.05 E-value=19 Score=30.00 Aligned_cols=115 Identities=10% Similarity=-0.109 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHH------hCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh---CCCc----hhhhhHHHHHHHH
Q 045108 113 IEVMIHSKALLL------LSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH---SPKS----EQAWSHRRWVINM 179 (425)
Q Consensus 113 ~~~L~~t~~lLl------~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~---~PKs----y~~W~hRrwll~~ 179 (425)
++++.....++. ..|....+++....+.... ..+++.+..+..++.. .+.. ..++.....+...
T Consensus 43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 119 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA---GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH 119 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 445555555555 3445566777777777766 4788999999988876 4432 3445555555555
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 045108 180 ISRNCSTLQWIIERESELVEKIAERSKMNYR------AWNHRCWLVSFMTREQVLNELKQSRNWSGL 240 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~------AW~hR~wll~~~~~~~~~~EL~~~~~~i~~ 240 (425)
.+. +++.+..+.++++..++.-. ++.....+....+. +.+.+....+.+..
T Consensus 120 ~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 120 FGD--------LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWLRARDI 176 (203)
T ss_dssp HTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred hCC--------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHH
Confidence 443 56777777777765432211 12333444444443 55666666666554
No 188
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=76.04 E-value=42 Score=33.18 Aligned_cols=161 Identities=15% Similarity=-0.042 Sum_probs=105.0
Q ss_pred HHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHH
Q 045108 118 HSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESEL 197 (425)
Q Consensus 118 ~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~ 197 (425)
+...+..-+|+ +++....++...+...+..+.+.++..++...|.....+..-..++..... +.....+.+..
T Consensus 167 ~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~----~~~d~~~A~~~ 239 (452)
T 3e4b_A 167 ICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL----GTPDEKTAQAL 239 (452)
T ss_dssp HHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG----SSCCHHHHHHH
T ss_pred HHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----CCCCHHHHHHH
Confidence 33334444444 666666666654222367888999999999999888877666655543211 12246788888
Q ss_pred HHHHHHhcCCchhhhhHHHHH-HHhhchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCCCCchhh
Q 045108 198 VEKIAERSKMNYRAWNHRCWL-VSFMTREQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNSSGYFVE 276 (425)
Q Consensus 198 ~~~~l~~~pkNY~AW~hR~wl-l~~~~~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~~~~~~~ 276 (425)
..+++ |.+-.++..-..+ .......+..+.+.++.+.++.+ +..++.....+... +.+.
T Consensus 240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~--G~g~------------- 299 (452)
T 3e4b_A 240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYE--GKWV------------- 299 (452)
T ss_dssp HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH--CSSS-------------
T ss_pred HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHc--CCCC-------------
Confidence 88887 8888899888887 42223345788888998888654 77788887776653 2100
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 277 TYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 277 ~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
..-+++.+.+..+.+ +++..+++.+-.+.
T Consensus 300 -~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 300 -PADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp -CCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 011566677777776 77777777765443
No 189
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=75.97 E-value=30 Score=32.77 Aligned_cols=119 Identities=8% Similarity=-0.101 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhCCc-------cHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCc------hhhhhHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCD-------FATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKS------EQAWSHRRWVIN 178 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe-------~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKs------y~~W~hRrwll~ 178 (425)
.+.++.....++.+.++ ...+++..+.+.... ..+++++.....++...++. ..+++...++..
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF---KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46778888888877543 244666667666666 47899999999998754321 235555666665
Q ss_pred HHhhccchhHHhHHHHHHHHHHHHH-----hcCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 045108 179 MISRNCSTLQWIIERESELVEKIAE-----RSKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVA 243 (425)
Q Consensus 179 ~l~~~~~~~~~~~~~EL~~~~~~l~-----~~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~ 243 (425)
..+. +++.+..+.++++ .+|....++...+.+....+. ++..+.+.++.+.....
T Consensus 234 ~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 234 RSGD--------DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ--TQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHTC--------HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCT
T ss_pred HCCC--------HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence 5543 6788888888888 888888888888888877765 68889999999887544
No 190
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=74.63 E-value=40 Score=28.89 Aligned_cols=95 Identities=12% Similarity=-0.044 Sum_probs=71.0
Q ss_pred HHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc-C-CchhhhhHHHHHHHhhchhhHHHHHHHHHH
Q 045108 159 VLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS-K-MNYRAWNHRCWLVSFMTREQVLNELKQSRN 236 (425)
Q Consensus 159 lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~-p-kNY~AW~hR~wll~~~~~~~~~~EL~~~~~ 236 (425)
.+..+|.+.++...=.|+|-+... ....++-+.+++.+++.+ | ++-.++.|..-..-+++ ++.+.+.++++
T Consensus 24 e~~~~~~~~~~~F~ya~~Lv~S~~-----~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--~Y~~A~~y~~~ 96 (152)
T 1pc2_A 24 EKAAGSVSKSTQFEYAWCLVRSKY-----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRG 96 (152)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTCSS-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHH
T ss_pred HHccCCCcHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--CHHHHHHHHHH
Confidence 344567777777777787776432 234678899999999998 7 56677777666554444 48899999999
Q ss_pred HHhhcCCChhHHHHHHHHHHHhhc
Q 045108 237 WSGLHVADNSCFHYHRRLMIWNLE 260 (425)
Q Consensus 237 ~i~~d~~N~SaW~yR~~ll~~l~~ 260 (425)
.++.+|.|.-|-+=+..+-.++..
T Consensus 97 lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 97 LLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999998888777666543
No 191
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=74.15 E-value=32 Score=29.50 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHHHhhC-C-CchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHH
Q 045108 147 PILMDELRLSAVVLSHS-P-KSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLVS 220 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~-P-Ksy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~ 220 (425)
..+++.+.+++.++..+ | ..-.++.|..-..-++. .+.+.+.+++++++.+|.|-.|-+=+.-+-.
T Consensus 49 ~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--------~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 49 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--------EYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45678888888888877 5 33444444443333322 3788888999999999988877655544433
No 192
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=70.00 E-value=87 Score=30.75 Aligned_cols=164 Identities=5% Similarity=-0.092 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHcc--CCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNK--QLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~--~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
.++++.+...++.. .+..++.....+.... ....+.++.+.+...++.. .+..++.....+..... ...
T Consensus 275 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g-----~~~ 345 (490)
T 2xm6_A 275 PLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLG-----SEE 345 (490)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSC-----CHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCC-----Ccc
Confidence 45566666665533 4556666666665543 0123567777777777765 34566666666655431 122
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh-c-hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFM-T-REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD 267 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~-~-~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~ 267 (425)
...+.+.++.++++. .+-.+|.+-.++...- + ..+....+.+..+.++.+ +-.++.....+...-.+.
T Consensus 346 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~------ 415 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV------ 415 (490)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS------
T ss_pred cHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC------
Confidence 457777888888876 4677888877777551 1 124677788888887754 566777776665541110
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhhcCC---CccHHHH
Q 045108 268 NNSSGYFVETYQVWKEELDWNESLIKRYVG---REALWLH 304 (425)
Q Consensus 268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~---neSaW~y 304 (425)
..-.++.+.+.++++..+|+ +..++.+
T Consensus 416 ----------~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 416 ----------ERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 01146677788888888743 5555443
No 193
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=69.54 E-value=99 Score=32.85 Aligned_cols=131 Identities=8% Similarity=-0.031 Sum_probs=89.7
Q ss_pred HHHH-HHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhh-----------CCC-----------chhh
Q 045108 113 IEVM-IHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSH-----------SPK-----------SEQA 169 (425)
Q Consensus 113 ~~~L-~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~-----------~PK-----------sy~~ 169 (425)
+++. +....++..+|.....|-..-.+....+ .+++.-.+.+.++.. .|. +..+
T Consensus 360 ~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~---~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSAVLAFSLSEQYELNT---KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 3565 7788889999999999987777766663 577778888887764 353 3457
Q ss_pred hhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHh-cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108 170 WSHRRWVINMISRNCSTLQWIIERESELVEKIAER-SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSCF 248 (425)
Q Consensus 170 W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~-~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~SaW 248 (425)
|-.-.-+..+.+. ++..-.++.++++. .+..++.|..-..+-.+.+. ..+......+..++..|.+-.-|
T Consensus 437 Wi~y~~~erR~~~--------l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 437 YCVYMNTMKRIQG--------LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-DTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHC--------HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCC--------HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCchHHH
Confidence 8766655555433 46677788888887 55567777654444433322 24667778888888889888888
Q ss_pred -HHHHHHH
Q 045108 249 -HYHRRLM 255 (425)
Q Consensus 249 -~yR~~ll 255 (425)
.|-.++.
T Consensus 508 ~~y~~fe~ 515 (679)
T 4e6h_A 508 NKYLDFLI 515 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 5555443
No 194
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=62.73 E-value=75 Score=27.38 Aligned_cols=137 Identities=8% Similarity=-0.111 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHhCCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 112 AIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
.++++.+...++.. .+..+++.-..+........+..+.+.++..++. +.++.++..-..++..-. .+...+
T Consensus 34 ~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~----g~~~d~ 105 (212)
T 3rjv_A 34 YQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQ----AGATDV 105 (212)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGG----GSSCCH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCC----CCccCH
Confidence 46788888887664 5788888888777653223478999999999865 567888777666654311 112347
Q ss_pred HHHHHHHHHHHHhcC--CchhhhhHHHHHHHhh-c-hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 045108 192 ERESELVEKIAERSK--MNYRAWNHRCWLVSFM-T-REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIW 257 (425)
Q Consensus 192 ~~EL~~~~~~l~~~p--kNY~AW~hR~wll~~~-~-~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~ 257 (425)
.+.+.+..++++..| .+-.|+..-..+...- + ..+....+.+..+.+.. +.+..++.....+...
T Consensus 106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 106 AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 899999999999998 4578888887777652 1 23578889999999988 5666677776666543
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=62.22 E-value=99 Score=28.62 Aligned_cols=120 Identities=13% Similarity=-0.081 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhCCccHH-----HHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhh------hHHHHHHHHH
Q 045108 112 AIEVMIHSKALLLLSCDFAT-----AWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAW------SHRRWVINMI 180 (425)
Q Consensus 112 ~~~~L~~t~~lLl~npe~~T-----aWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W------~hRrwll~~l 180 (425)
.++++.....+|...|.... +++....+.... ..+.+.+..+..++...|+....+ .+...+....
T Consensus 30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK---GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 46788888888888876533 455555555544 478889999999988766544332 2233333332
Q ss_pred hhccchhHHhHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 045108 181 SRNCSTLQWIIERESELVEKIAERSK--------MNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVAD 244 (425)
Q Consensus 181 ~~~~~~~~~~~~~EL~~~~~~l~~~p--------kNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N 244 (425)
+ .+.+.+..+.++++..+ ..-.++.....+....+. +++....+.+.+...+..
T Consensus 107 G--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 107 G--------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASARSGIEVLSSY 168 (373)
T ss_dssp T--------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTTS
T ss_pred C--------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhcc
Confidence 2 25677777777777653 233455556666655554 678888888888877653
No 196
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=54.74 E-value=95 Score=26.05 Aligned_cols=87 Identities=8% Similarity=0.065 Sum_probs=54.0
Q ss_pred CccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 127 CDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 127 pe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
|..-|-.||=.-++.+.. ..+..+.+.+++.++..+|. .||.++-.+.-.. -....+.+.+.+|+.+++..|
T Consensus 38 vs~qt~F~yAw~Lv~S~~-~~d~~~GI~LLe~l~~~~~~------~~Rd~LYyLAvg~-yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAES------RRRECLYYLTIGC-YKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcc------hhHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhCC
Confidence 445566666556665543 34677889999999987762 2444443221100 001237899999999999999
Q ss_pred CchhhhhHHHHHHHh
Q 045108 207 MNYRAWNHRCWLVSF 221 (425)
Q Consensus 207 kNY~AW~hR~wll~~ 221 (425)
.|-.|=.-+.-+-..
T Consensus 110 ~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 110 NNKQVGALKSMVEDK 124 (134)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 998885555444433
No 197
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=52.46 E-value=1.6e+02 Score=28.02 Aligned_cols=157 Identities=6% Similarity=-0.127 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCC-----chh-hhhHHHHHHHHHhh
Q 045108 111 VAIEVMIHSKALLLLSC--DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPK-----SEQ-AWSHRRWVINMISR 182 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~np--e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PK-----sy~-~W~hRrwll~~l~~ 182 (425)
..+++++++...|..+| .+..+.-..-+++...+ ..+.+.+.+..+...+|+ ..+ +.---.|+-...+.
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~---r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN---NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 35788899888888887 77777777777777764 678889999998888883 222 22222444433332
Q ss_pred ccchhHHhHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhchhhHHHHHHHHHHHHhh----------cCCChhHHH
Q 045108 183 NCSTLQWIIERESELVEKIAERSKM---NYRAWNHRCWLVSFMTREQVLNELKQSRNWSGL----------HVADNSCFH 249 (425)
Q Consensus 183 ~~~~~~~~~~~EL~~~~~~l~~~pk---NY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~----------d~~N~SaW~ 249 (425)
+.+++.+.+.+.+++..|. -.-.|+ +..+++. +++.-+.++.+++. +|.|-.+-.
T Consensus 192 ------~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~--~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 192 ------ETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRN--IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp ------STTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTC--HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred ------ccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCC--HHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 1257788999999999986 222333 3333443 56666666677766 477766654
Q ss_pred HHHHHHHHhhccccccCCCCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHH
Q 045108 250 YHRRLMIWNLEGFCHIQDNNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLH 304 (425)
Q Consensus 250 yR~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~y 304 (425)
....+-.. .+. +.-++..++...+|+|.-+=-|
T Consensus 260 N~i~l~~~-lgk---------------------~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 260 NQITLALM-QGL---------------------DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHH-TTC---------------------TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHH-hCh---------------------HHHHHHHHHHHhCCCChHHHHH
Confidence 44322222 110 1236677888889988654444
No 198
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=49.24 E-value=2e+02 Score=28.12 Aligned_cols=167 Identities=10% Similarity=-0.063 Sum_probs=119.4
Q ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHH
Q 045108 111 VAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQW 189 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~ 189 (425)
..++++.+...++..+|....+++.-..++.... ...++++.+.+...+. |.++.++.....++..... ..
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~-----~~ 265 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE-----LG 265 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-----GC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-----CC
Confidence 4678999999999999999999888787776542 2357899999999988 9999999988887332111 12
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc--hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCC
Q 045108 190 IIERESELVEKIAERSKMNYRAWNHRCWLVSFMT--REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQD 267 (425)
Q Consensus 190 ~~~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~--~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~ 267 (425)
.+.+.+..+.++++.. +-.|+..-..+...-. ..+..+.+.+..+.+ +.+..++.....+... +.+.
T Consensus 266 d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~--G~g~---- 334 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR--GYLG---- 334 (452)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT--TTTS----
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC--CCCC----
Confidence 3688899999998655 7888888887776321 125778889988888 7888888888766643 1100
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q 045108 268 NNSSGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFL 308 (425)
Q Consensus 268 ~~~~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~L 308 (425)
..-.++.+.+..+..+ +++..+.+..-.+
T Consensus 335 ----------~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 335 ----------KVYPQKALDHLLTAAR--NGQNSADFAIAQL 363 (452)
T ss_dssp ----------SCCHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred ----------CcCHHHHHHHHHHHHh--hChHHHHHHHHHH
Confidence 0114666777777765 5666776665443
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=47.25 E-value=1.8e+02 Score=27.70 Aligned_cols=126 Identities=6% Similarity=-0.120 Sum_probs=86.9
Q ss_pred HHHHHHHhCCccHHHHHHHHHHHHcc-----C---CcccHHHHHHHHHHHHhhCCC--chhhhhHHHHHHHHHhhccchh
Q 045108 118 HSKALLLLSCDFATAWNSRKLIVSNK-----Q---LLPILMDELRLSAVVLSHSPK--SEQAWSHRRWVINMISRNCSTL 187 (425)
Q Consensus 118 ~t~~lLl~npe~~TaWn~Rr~lL~~~-----~---~~~~l~~EL~~~~~lL~~~PK--sy~~W~hRrwll~~l~~~~~~~ 187 (425)
.-..+-..+|++..++.+........ . .+..+......++.++..+|+ .-.+|....-+..++....
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~--- 216 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESF--- 216 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTT---
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCcc---
Confidence 34556678999999999988766541 1 234578889999999999999 5569988887776642110
Q ss_pred HHhHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHh-hchhhHHHHHHHHHHHHhhcCCChhHH
Q 045108 188 QWIIERESELVEKIAERSKM-NYRAWNHRCWLVSF-MTREQVLNELKQSRNWSGLHVADNSCF 248 (425)
Q Consensus 188 ~~~~~~EL~~~~~~l~~~pk-NY~AW~hR~wll~~-~~~~~~~~EL~~~~~~i~~d~~N~SaW 248 (425)
....++.-+..+++++++|. |-.+...-...+.. .+. .+....++++.+..+|+.-..|
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd--~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN--RAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC--HHHHHHHHHHHHHCCGGGCSSC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC--HHHHHHHHHHHHcCCCCCCCCh
Confidence 11257888899999999995 46666554444333 233 4566788888888888743333
No 200
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=46.41 E-value=86 Score=23.82 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHHhhC-------CCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCchhhhhHHHHHH
Q 045108 147 PILMDELRLSAVVLSHS-------PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMNYRAWNHRCWLV 219 (425)
Q Consensus 147 ~~l~~EL~~~~~lL~~~-------PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkNY~AW~hR~wll 219 (425)
..+..+..+...++... +....++.+-..++.+++. +...+.+.+++++.+|.+-.+...+.++-
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD--------LDKALLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 46888888888888753 3345566555555555543 68889999999999998877766665443
No 201
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=46.32 E-value=92 Score=29.79 Aligned_cols=89 Identities=4% Similarity=-0.069 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHccC--CcccHHHHHHHHHHHHhhCCC-chhhhhHHHHHHHHH-hhcc
Q 045108 111 VAIEVMIHSKALLLLSCDF--ATAWNSRKLIVSNKQ--LLPILMDELRLSAVVLSHSPK-SEQAWSHRRWVINMI-SRNC 184 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe~--~TaWn~Rr~lL~~~~--~~~~l~~EL~~~~~lL~~~PK-sy~~W~hRrwll~~l-~~~~ 184 (425)
....+....+.+|.++|.+ -.||.+.+.+..... ...+.++.-..+.++|.++|. +..+..+-...+-.. ++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-- 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-- 255 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC--
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC--
Confidence 3567778889999999995 559999998887742 125789999999999999995 487777666554332 22
Q ss_pred chhHHhHHHHHHHHHHHHHhcCC
Q 045108 185 STLQWIIERESELVEKIAERSKM 207 (425)
Q Consensus 185 ~~~~~~~~~EL~~~~~~l~~~pk 207 (425)
.+.....+++++..+|+
T Consensus 256 ------~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 ------RAGFDEALDRALAIDPE 272 (301)
T ss_dssp ------HHHHHHHHHHHHHCCGG
T ss_pred ------HHHHHHHHHHHHcCCCC
Confidence 35567889999998886
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=39.74 E-value=1.2e+02 Score=22.93 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHH
Q 045108 128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVIN 178 (425)
Q Consensus 128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~ 178 (425)
....+++.-..++... +.+..++..+..++...|.+..+.+.++++-.
T Consensus 44 ~~~~i~~~L~~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQ---GDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp CHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 3445555556666666 47899999999999999999999877774433
No 203
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=35.18 E-value=2.1e+02 Score=24.26 Aligned_cols=85 Identities=8% Similarity=0.091 Sum_probs=56.7
Q ss_pred CCccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhc
Q 045108 126 SCDFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERS 205 (425)
Q Consensus 126 npe~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~ 205 (425)
.|.--|-+||=.-++.+.. ..+.++-+.+++.++..+|. .||.++=.+.-.. -....+.+.+.+|+.+|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~-~~di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~-ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTD-VNDERLGVKILTDIYKEAES------RRRECLYYLTIGC-YKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCCS------THHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcc------chhHHHHHHHHHH-HHhhhHHHHHHHHHHHHhcC
Confidence 3556666777666666553 45678889999999998887 4666654432100 00124789999999999999
Q ss_pred CCchhhhhHHHHH
Q 045108 206 KMNYRAWNHRCWL 218 (425)
Q Consensus 206 pkNY~AW~hR~wl 218 (425)
|.|-.|=.-+.-+
T Consensus 108 P~n~QA~~Lk~~I 120 (144)
T 1y8m_A 108 RNNKQVGALKSMV 120 (144)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9998875444433
No 204
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=34.63 E-value=2.7e+02 Score=25.48 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=56.5
Q ss_pred HHHHHHHHccCCcccHHHHHHHHHHHHhhCCCchh-----hhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcCCc
Q 045108 134 NSRKLIVSNKQLLPILMDELRLSAVVLSHSPKSEQ-----AWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSKMN 208 (425)
Q Consensus 134 n~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~PKsy~-----~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~pkN 208 (425)
..+..+.... ..+.+.+..+..++...|.... +++....+....+ .+.+.+..+.++++..|+.
T Consensus 18 ~~~a~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 18 ALRAQVAIND---GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--------ELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHhc
Confidence 4445444444 4789999999999998886643 2233333333322 2567777888888766654
Q ss_pred hhh------hhHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 045108 209 YRA------WNHRCWLVSFMTREQVLNELKQSRNWSGLH 241 (425)
Q Consensus 209 Y~A------W~hR~wll~~~~~~~~~~EL~~~~~~i~~d 241 (425)
-.. ..+...+....+. +.+.+..+.+.+...
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~--~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGF--LQTAWETQEKAFQLI 123 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 322 2334444444443 667777777777654
No 205
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=33.47 E-value=1.4e+02 Score=25.28 Aligned_cols=67 Identities=10% Similarity=-0.038 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHccC----CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhh
Q 045108 110 TVAIEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ----LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISR 182 (425)
Q Consensus 110 ~~~~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~----~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~ 182 (425)
....+.+.+.+.++.-+|+. ||.++--+. ....+.+++.+++.+|...|.|.++=.=+.-+-.++..
T Consensus 56 ~di~~GI~LLe~l~~~~~~~------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~k 126 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESR------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCST------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccc------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34567888899999988873 555543221 24689999999999999999999987777666665543
No 206
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=26.46 E-value=4.5e+02 Score=25.41 Aligned_cols=168 Identities=8% Similarity=-0.083 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHccC-CcccHHHHHHHHHHHHhhCCCchhhhhHHHHHHHHHhhccchhHHhH
Q 045108 113 IEVMIHSKALLLLSCDFATAWNSRKLIVSNKQ-LLPILMDELRLSAVVLSHSPKSEQAWSHRRWVINMISRNCSTLQWII 191 (425)
Q Consensus 113 ~~~L~~t~~lLl~npe~~TaWn~Rr~lL~~~~-~~~~l~~EL~~~~~lL~~~PKsy~~W~hRrwll~~l~~~~~~~~~~~ 191 (425)
++++.+...++.. .+..++.....+..... ...+.++.+.+...++.. .+..++.....+...... ......
T Consensus 240 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~---g~~~~~ 312 (490)
T 2xm6_A 240 TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAE---GVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBT---TBCCCH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCC---CCcCCH
Confidence 3444444444332 33444444444444311 123566666666666543 344555555544443200 011235
Q ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc-hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHhhccccccCCCCC
Q 045108 192 ERESELVEKIAERSKMNYRAWNHRCWLVSFMT-REQVLNELKQSRNWSGLHVADNSCFHYHRRLMIWNLEGFCHIQDNNS 270 (425)
Q Consensus 192 ~~EL~~~~~~l~~~pkNY~AW~hR~wll~~~~-~~~~~~EL~~~~~~i~~d~~N~SaW~yR~~ll~~l~~~~~~~~~~~~ 270 (425)
.+.+....++++.. +-.++....++....+ ..+....+.++.+.++. .|..+|.+...+...-.+.
T Consensus 313 ~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~--------- 379 (490)
T 2xm6_A 313 EQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGV--------- 379 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS---------
T ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC---------
Confidence 77778888888764 4568888777776543 23567788888888877 5678888887776541110
Q ss_pred CCchhhhhHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 045108 271 SGYFVETYQVWKEELDWNESLIKRYVGREALWLHRRFLS 309 (425)
Q Consensus 271 ~~~~~~~~~~~~~EL~~~~~~I~~~p~neSaW~yrr~Ll 309 (425)
..-+++.+.+..++++. ++..+|+..-.+.
T Consensus 380 -------~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 380 -------KKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIY 409 (490)
T ss_dssp -------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 01145667777777764 4666776654444
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=23.93 E-value=4.6e+02 Score=24.73 Aligned_cols=118 Identities=8% Similarity=-0.069 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHhCCc-----cHHHHHHHHH---HHHccCCcccHHHHHHHHHHHHhhCCC---chhhhhHHHHHHHH
Q 045108 111 VAIEVMIHSKALLLLSCD-----FATAWNSRKL---IVSNKQLLPILMDELRLSAVVLSHSPK---SEQAWSHRRWVINM 179 (425)
Q Consensus 111 ~~~~~L~~t~~lLl~npe-----~~TaWn~Rr~---lL~~~~~~~~l~~EL~~~~~lL~~~PK---sy~~W~hRrwll~~ 179 (425)
..+.+.+....+...+|+ ..+.-+.--- +.... ..+++.+.+++.++..+|. ...+|+ +..+
T Consensus 151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~---~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~ 223 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK---ETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQ 223 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC---STTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHH
T ss_pred CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHH
Confidence 356777788888889993 5554443322 22222 4678999999999999997 456676 4444
Q ss_pred HhhccchhHHhHHHHHHHHHHHHHh----------cCCchhhhhHHHHHHHhhchhhHHHHHHHHHHHHhhcCCChhH
Q 045108 180 ISRNCSTLQWIIERESELVEKIAER----------SKMNYRAWNHRCWLVSFMTREQVLNELKQSRNWSGLHVADNSC 247 (425)
Q Consensus 180 l~~~~~~~~~~~~~EL~~~~~~l~~----------~pkNY~AW~hR~wll~~~~~~~~~~EL~~~~~~i~~d~~N~Sa 247 (425)
++. +.+.-+.+..+++. +|+|-.+=....-+-..++. ..-+++.++...+|.+--.
T Consensus 224 ~g~--------~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk----~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 224 QRN--------IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL----DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTC--------HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC----TTHHHHHHHHHTTCCCHHH
T ss_pred cCC--------HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh----HHHHHHHHHHHhCCCChHH
Confidence 443 45566666666666 47777765444333333332 3356777777777766533
No 208
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=22.16 E-value=2.7e+02 Score=22.80 Aligned_cols=86 Identities=10% Similarity=0.006 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHHHHccCCcccHHHHHHHHHHHHhhC-CCchhhhhHHHHHHHHHhhccchhHHhHHHHHHHHHHHHHhcC
Q 045108 128 DFATAWNSRKLIVSNKQLLPILMDELRLSAVVLSHS-PKSEQAWSHRRWVINMISRNCSTLQWIIERESELVEKIAERSK 206 (425)
Q Consensus 128 e~~TaWn~Rr~lL~~~~~~~~l~~EL~~~~~lL~~~-PKsy~~W~hRrwll~~l~~~~~~~~~~~~~EL~~~~~~l~~~p 206 (425)
..-+-.+|=.-++.+.. ....++-+.++..++..+ | ..||-++-.+.-.. -....+.+.+.+|+.+|+..|
T Consensus 34 s~~~~F~yAw~Lv~S~~-~~d~~~GI~lLe~l~~~~~p------~~~Rd~lY~LAvg~-yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGN-YRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTSCH------HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCC
Confidence 33344444434444332 344566788888877765 3 24555554332100 001237888889999999999
Q ss_pred CchhhhhHHHHHHHh
Q 045108 207 MNYRAWNHRCWLVSF 221 (425)
Q Consensus 207 kNY~AW~hR~wll~~ 221 (425)
.|-.|-.-+.-+-..
T Consensus 106 ~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 106 QNNQAKELERLIDKA 120 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888887666555443
Done!