BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045109
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 280 GLGVRVDERDLSMH-SGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
+ +V E DL + + F++ L ++ G+ +PR+FV +IGGA + R+H+EG+L
Sbjct: 73 NVNYKVVELDLLEYGNQFQDALYKMTGER----TVPRIFVNGTFIGGATDTHRLHKEGKL 128
Query: 339 EKVVEGCEM 347
+V C +
Sbjct: 129 LPLVHQCYL 137
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 281 LGVRVDERDLSMHSG-FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQLE 339
+ +V E DL + F++ L ++ G+ +PR+FV +IGGA + R+H+EG+L
Sbjct: 52 VNYKVVELDLLEYGNQFQDALYKMTGER----TVPRIFVNGTFIGGATDTHRLHKEGKLL 107
Query: 340 KVVEGCEM 347
+V C +
Sbjct: 108 PLVHQCYL 115
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 284 RVDERDLSMHSG-FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQLEKVV 342
+V E DL + F++ L ++ G+ +PR+FV +IGGA + R+H+EG+L +V
Sbjct: 63 KVVELDLLEYGNQFQDALYKMTGER----TVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 118
Query: 343 EGC 345
C
Sbjct: 119 HQC 121
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 298 NELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
NE+++ L +PRVF+GK+ IGG ++ MH+ G+L
Sbjct: 54 NEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGEL 94
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 271 CCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIR 330
C + +L G +E D S + E++E G P++F+G ++GG +++
Sbjct: 19 CARAKALLARKGAEFNEIDASATPELRAEMQERSGRNT----FPQIFIGSVHVGGCDDLY 74
Query: 331 RMHEEGQLEKVVEGCEMI 348
+ +EG+L+ +++ ++I
Sbjct: 75 ALEDEGKLDSLLKTGKLI 92
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 298 NELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
NE+++ L +PRVF+GK IGG+ ++ + + G+L
Sbjct: 54 NEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 298 NELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
NE+++ L +PRVF+GK IGG ++ + + G+L
Sbjct: 55 NEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 31.6 bits (70), Expect = 0.79, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 271 CCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIR 330
C V+ + K LGV+ +L +L+++L +P VFV K+IGG +
Sbjct: 32 CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTV 91
Query: 331 RMHEEGQLE 339
+++ +G LE
Sbjct: 92 KLNRKGDLE 100
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 31.6 bits (70), Expect = 0.86, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 313 LPRVFVGKKYIGGAEEIRRMHEEGQLEKVV 342
+P VF+G K+IGG + +++ +G+LE ++
Sbjct: 73 VPNVFIGGKHIGGCTDTVKLYRKGELEPLL 102
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 266 KTYEDCCH-VRVILKGLGVR---VDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK 321
KTY C+ V+ +L +G V+ +LS S ++ L G G +P VF+G K
Sbjct: 27 KTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRG----TVPNVFIGGK 82
Query: 322 YIGGAEEIRRMHEEGQL 338
IGG + + H+ +L
Sbjct: 83 QIGGCDTVVEKHQRNEL 99
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 266 KTYEDCCH-VRVILKGLGVR---VDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK 321
KTY C+ V+ +L +G V+ +LS S ++ L G G +P VF+G K
Sbjct: 28 KTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRG----TVPNVFIGGK 83
Query: 322 YIGGAEEIRRMHEEGQL 338
IGG + + H+ +L
Sbjct: 84 QIGGCDTVVEKHQRNEL 100
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 295 GFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQLEKVVEGCEMIDDG 351
G EL+E + G +P + V GG EEI+++H +G K++E ++ DG
Sbjct: 53 GHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQG---KLLESLQVWSDG 106
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 299 ELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQLEKVVE 343
EL+E + + +P+++V K++IGG + I M G+L ++E
Sbjct: 61 ELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 266 KTYEDCCH---VRVILKGLGVRVDERDL-SMHSGFKNELKELLGDGFSGGGLPRVFVGKK 321
K+Y C H V+ + LGV + +L + G + ++E+L + + +P +FV K
Sbjct: 24 KSY--CPHSTRVKELFSSLGVECNVLELDQVDDGAR--VQEVLSEITNQKTVPNIFVNKV 79
Query: 322 YIGGAEEIRRMHEEGQLEKVVE 343
++GG ++ + ++ G L+K+++
Sbjct: 80 HVGGCDQTFQAYQSGLLQKLLQ 101
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 279 KGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
K L + +DE +S S ++ L+E+ G +P V++ K+IGG ++ + + G+L
Sbjct: 50 KALVLELDE--MSNGSEIQDALEEISGQK----TVPNVYINGKHIGGNSDLETLKKNGKL 103
Query: 339 EKVVE 343
++++
Sbjct: 104 AEILK 108
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 279 KGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
K L + +DE +S S ++ L+E+ G +P V++ K+IGG ++ + + G+L
Sbjct: 47 KALVLELDE--MSNGSEIQDALEEISGQK----TVPNVYINGKHIGGNSDLETLKKNGKL 100
Query: 339 EKVVE 343
++++
Sbjct: 101 AEILK 105
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 279 KGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
K L + +DE +S S ++ L+E+ G +P V++ K+IGG ++ + + G+L
Sbjct: 67 KALVLELDE--MSNGSEIQDALEEISGQK----TVPNVYINGKHIGGNSDLETLKKNGKL 120
Query: 339 EKVVE 343
++++
Sbjct: 121 AEILK 125
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 299 ELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQL 338
EL++ + D + +P+V++ +++GG + + +MH+ G L
Sbjct: 63 ELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 102
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 271 CCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIR 330
C R +L GV+ + D S + +E++ P++F+G ++GG +++
Sbjct: 19 CKRARDLLDKKGVKYTDIDAST-----SLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLY 73
Query: 331 RMHEEGQLEKVVE 343
+ +G+L+ +++
Sbjct: 74 ALENKGKLDSLLQ 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,777,884
Number of Sequences: 62578
Number of extensions: 442480
Number of successful extensions: 1006
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 27
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)