Query 045109
Match_columns 423
No_of_seqs 244 out of 1358
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 1.8E-64 3.8E-69 489.3 17.0 254 86-422 22-280 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 1.5E-49 3.2E-54 356.9 16.7 147 253-418 1-147 (147)
3 cd03030 GRX_SH3BGR Glutaredoxi 99.9 6.7E-24 1.5E-28 177.5 9.0 91 253-343 1-91 (92)
4 PRK10824 glutaredoxin-4; Provi 99.8 4.8E-21 1E-25 166.5 10.8 101 241-348 4-106 (115)
5 TIGR02189 GlrX-like_plant Glut 99.8 4.3E-21 9.4E-26 161.1 9.9 94 246-347 2-96 (99)
6 PHA03050 glutaredoxin; Provisi 99.8 2.9E-20 6.3E-25 159.1 10.1 99 242-348 3-105 (108)
7 TIGR00365 monothiol glutaredox 99.8 6.6E-20 1.4E-24 153.4 11.1 93 243-342 3-97 (97)
8 KOG1752 Glutaredoxin and relat 99.8 8E-20 1.7E-24 156.6 10.7 97 243-347 5-102 (104)
9 cd03028 GRX_PICOT_like Glutare 99.8 8.8E-19 1.9E-23 143.9 9.9 88 246-339 2-90 (90)
10 PTZ00062 glutaredoxin; Provisi 99.7 1.6E-17 3.5E-22 156.9 11.5 96 242-344 103-200 (204)
11 COG0278 Glutaredoxin-related p 99.7 2.1E-17 4.4E-22 141.2 9.6 97 242-345 5-104 (105)
12 TIGR02181 GRX_bact Glutaredoxi 99.7 7.1E-17 1.5E-21 127.4 9.2 78 254-342 1-79 (79)
13 PRK10638 glutaredoxin 3; Provi 99.7 2.4E-16 5.2E-21 126.7 10.5 80 253-343 3-83 (83)
14 cd03418 GRX_GRXb_1_3_like Glut 99.6 1.8E-15 3.9E-20 117.4 10.0 73 253-336 1-75 (75)
15 cd03027 GRX_DEP Glutaredoxin ( 99.6 4E-15 8.7E-20 116.5 9.2 72 252-334 1-73 (73)
16 TIGR02180 GRX_euk Glutaredoxin 99.6 2.7E-15 5.8E-20 117.7 8.2 81 254-342 1-84 (84)
17 KOG0911 Glutaredoxin-related p 99.6 1.1E-14 2.3E-19 139.4 10.2 97 241-344 128-226 (227)
18 cd03419 GRX_GRXh_1_2_like Glut 99.6 1E-14 2.2E-19 114.5 7.6 81 253-341 1-82 (82)
19 COG0695 GrxC Glutaredoxin and 99.6 1.4E-14 3.1E-19 117.7 8.5 77 253-338 2-79 (80)
20 PF04908 SH3BGR: SH3-binding, 99.5 3.9E-14 8.4E-19 120.7 7.6 91 253-343 2-97 (99)
21 cd03029 GRX_hybridPRX5 Glutare 99.5 1.9E-13 4.2E-18 106.5 9.0 69 253-333 2-71 (72)
22 TIGR02183 GRXA Glutaredoxin, G 99.5 4.6E-13 1E-17 109.2 9.9 74 254-336 2-81 (86)
23 PRK11200 grxA glutaredoxin 1; 99.4 5.6E-13 1.2E-17 107.4 10.0 74 253-335 2-81 (85)
24 TIGR02190 GlrX-dom Glutaredoxi 99.4 5.3E-13 1.2E-17 106.7 9.6 73 248-332 4-77 (79)
25 cd02066 GRX_family Glutaredoxi 99.4 6.2E-13 1.3E-17 99.4 9.4 71 253-334 1-72 (72)
26 PRK12759 bifunctional gluaredo 99.4 2.7E-12 5.8E-17 131.9 10.5 89 252-350 2-96 (410)
27 PF00462 Glutaredoxin: Glutare 99.3 1.4E-11 3E-16 93.1 7.7 59 254-323 1-60 (60)
28 TIGR02194 GlrX_NrdH Glutaredox 99.0 1.7E-09 3.7E-14 84.8 6.7 63 254-328 1-65 (72)
29 PRK10329 glutaredoxin-like pro 98.9 5.3E-09 1.2E-13 85.2 7.7 64 253-328 2-66 (81)
30 TIGR02196 GlrX_YruB Glutaredox 98.6 3E-07 6.5E-12 69.1 9.0 65 253-328 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 98.5 4.6E-07 9.9E-12 68.1 8.0 65 253-328 1-66 (73)
32 KOG4023 Uncharacterized conser 98.2 3.6E-06 7.9E-11 72.7 5.8 95 253-347 3-101 (108)
33 TIGR02200 GlrX_actino Glutared 98.0 3.6E-05 7.7E-10 59.2 8.7 65 253-327 1-67 (77)
34 cd02973 TRX_GRX_like Thioredox 97.9 2.3E-05 4.9E-10 59.7 5.8 58 253-325 2-65 (67)
35 cd03040 GST_N_mPGES2 GST_N fam 97.6 0.00055 1.2E-08 53.4 8.8 67 253-333 1-72 (77)
36 cd00570 GST_N_family Glutathio 97.5 0.00056 1.2E-08 49.7 7.0 64 265-332 5-69 (71)
37 cd03041 GST_N_2GST_N GST_N fam 97.4 0.0015 3.3E-08 51.6 9.1 69 254-333 2-73 (77)
38 cd03037 GST_N_GRX2 GST_N famil 97.3 0.0013 2.8E-08 50.7 7.3 63 265-333 5-69 (71)
39 cd02977 ArsC_family Arsenate R 97.0 0.0013 2.8E-08 55.2 5.0 46 254-306 1-47 (105)
40 cd03036 ArsC_like Arsenate Red 96.9 0.0014 3E-08 56.2 5.0 46 254-306 1-47 (111)
41 cd03055 GST_N_Omega GST_N fami 96.9 0.0056 1.2E-07 49.9 7.8 71 250-332 15-87 (89)
42 cd03059 GST_N_SspA GST_N famil 96.8 0.0077 1.7E-07 46.0 7.6 64 265-333 5-69 (73)
43 PRK01655 spxA transcriptional 96.6 0.004 8.6E-08 55.2 5.8 46 254-306 2-48 (131)
44 cd03060 GST_N_Omega_like GST_N 96.4 0.015 3.3E-07 44.9 7.3 62 265-331 5-68 (71)
45 cd03051 GST_N_GTT2_like GST_N 96.2 0.017 3.8E-07 43.7 6.4 63 265-331 5-71 (74)
46 TIGR01617 arsC_related transcr 96.2 0.01 2.2E-07 51.1 5.5 46 254-306 1-47 (117)
47 cd03032 ArsC_Spx Arsenate Redu 96.1 0.014 3E-07 50.2 6.1 45 254-305 2-47 (115)
48 cd03054 GST_N_Metaxin GST_N fa 96.1 0.057 1.2E-06 41.7 8.8 57 266-334 13-70 (72)
49 PRK12559 transcriptional regul 96.1 0.013 2.8E-07 52.2 5.7 46 254-306 2-48 (131)
50 PRK13344 spxA transcriptional 96.0 0.015 3.2E-07 51.9 6.1 46 254-306 2-48 (132)
51 PF05768 DUF836: Glutaredoxin- 95.9 0.046 1E-06 44.2 7.8 52 253-320 1-57 (81)
52 TIGR00411 redox_disulf_1 small 95.8 0.043 9.3E-07 42.6 7.0 54 253-321 2-62 (82)
53 PF13417 GST_N_3: Glutathione 95.8 0.031 6.7E-07 43.8 6.1 64 265-333 3-67 (75)
54 cd03035 ArsC_Yffb Arsenate Red 95.7 0.021 4.6E-07 48.8 5.3 46 254-306 1-47 (105)
55 cd03056 GST_N_4 GST_N family, 95.7 0.037 8.1E-07 42.0 6.1 63 265-331 5-70 (73)
56 cd03045 GST_N_Delta_Epsilon GS 95.6 0.046 9.9E-07 41.9 6.3 64 265-332 5-71 (74)
57 PF13192 Thioredoxin_3: Thiore 95.5 0.055 1.2E-06 43.1 6.7 52 268-328 9-67 (76)
58 cd02975 PfPDO_like_N Pyrococcu 95.3 0.11 2.3E-06 44.5 8.4 61 244-318 15-81 (113)
59 PLN03165 chaperone protein dna 95.3 0.015 3.4E-07 51.1 3.4 53 356-422 41-93 (111)
60 cd03033 ArsC_15kD Arsenate Red 95.2 0.039 8.5E-07 48.0 5.4 46 254-306 2-48 (113)
61 TIGR01295 PedC_BrcD bacterioci 95.0 0.22 4.7E-06 43.5 9.6 70 250-325 22-105 (122)
62 TIGR00412 redox_disulf_2 small 94.8 0.14 3E-06 40.9 7.2 48 267-323 8-60 (76)
63 cd03026 AhpF_NTD_C TRX-GRX-lik 94.8 0.083 1.8E-06 43.8 6.1 62 248-324 10-77 (89)
64 cd03080 GST_N_Metaxin_like GST 94.7 0.37 8E-06 37.7 9.2 55 267-333 15-70 (75)
65 cd03053 GST_N_Phi GST_N family 94.5 0.18 3.8E-06 38.9 7.0 69 254-333 2-73 (76)
66 cd03042 GST_N_Zeta GST_N famil 94.4 0.11 2.5E-06 39.4 5.6 62 267-332 7-71 (73)
67 cd03076 GST_N_Pi GST_N family, 94.1 0.35 7.5E-06 37.8 7.9 61 268-333 9-70 (73)
68 PHA02125 thioredoxin-like prot 93.9 0.21 4.5E-06 39.5 6.3 53 254-322 2-55 (75)
69 COG1393 ArsC Arsenate reductas 93.2 0.19 4.1E-06 44.3 5.5 47 253-306 2-49 (117)
70 cd03061 GST_N_CLIC GST_N famil 92.9 0.68 1.5E-05 39.2 8.2 64 266-334 19-83 (91)
71 cd03058 GST_N_Tau GST_N family 92.9 0.62 1.3E-05 36.0 7.4 64 265-332 5-69 (74)
72 COG3019 Predicted metal-bindin 92.7 0.7 1.5E-05 42.7 8.5 77 250-337 24-104 (149)
73 TIGR01616 nitro_assoc nitrogen 92.7 0.24 5.2E-06 44.1 5.5 47 253-306 2-49 (126)
74 cd03038 GST_N_etherase_LigE GS 92.3 0.54 1.2E-05 37.4 6.5 64 267-333 14-79 (84)
75 cd03052 GST_N_GDAP1 GST_N fami 92.3 0.69 1.5E-05 36.5 7.0 63 266-332 6-71 (73)
76 TIGR00014 arsC arsenate reduct 92.2 0.29 6.3E-06 42.3 5.2 46 254-306 1-47 (114)
77 PRK10853 putative reductase; P 92.0 0.35 7.6E-06 42.4 5.6 46 254-306 2-48 (118)
78 cd02953 DsbDgamma DsbD gamma f 91.9 0.7 1.5E-05 37.8 6.9 61 248-318 7-78 (104)
79 cd03034 ArsC_ArsC Arsenate Red 91.8 0.34 7.4E-06 41.7 5.2 45 254-305 1-46 (112)
80 PRK10026 arsenate reductase; P 91.7 0.35 7.6E-06 44.1 5.4 47 253-306 3-50 (141)
81 PRK10387 glutaredoxin 2; Provi 91.6 0.72 1.6E-05 42.0 7.4 64 265-334 5-70 (210)
82 cd03039 GST_N_Sigma_like GST_N 91.6 0.95 2.1E-05 34.8 7.0 61 268-332 8-69 (72)
83 cd03049 GST_N_3 GST_N family, 91.0 1.1 2.4E-05 34.4 6.9 62 265-331 5-70 (73)
84 TIGR02182 GRXB Glutaredoxin, G 90.3 1.4 3E-05 41.1 8.2 63 266-334 5-69 (209)
85 cd02947 TRX_family TRX family; 90.2 2.4 5.1E-05 32.0 8.0 56 252-321 11-74 (93)
86 cd03048 GST_N_Ure2p_like GST_N 89.8 2 4.2E-05 33.8 7.5 59 270-332 10-74 (81)
87 cd03044 GST_N_EF1Bgamma GST_N 88.8 2.3 5E-05 33.1 7.2 63 266-332 6-71 (75)
88 COG0484 DnaJ DnaJ-class molecu 88.7 0.3 6.5E-06 51.0 2.7 54 356-422 142-204 (371)
89 cd01659 TRX_superfamily Thiore 88.7 1.1 2.3E-05 30.3 4.6 51 265-320 5-61 (69)
90 PHA02278 thioredoxin-like prot 88.7 2.4 5.3E-05 36.1 7.7 64 250-323 13-85 (103)
91 KOG3029 Glutathione S-transfer 88.5 1.4 3.1E-05 45.1 7.1 83 252-348 89-178 (370)
92 PF13409 GST_N_2: Glutathione 88.3 0.94 2E-05 35.3 4.6 63 268-334 1-68 (70)
93 PRK14287 chaperone protein Dna 87.7 0.45 9.8E-06 49.1 3.2 55 356-422 138-202 (371)
94 PRK10767 chaperone protein Dna 87.7 0.47 1E-05 48.8 3.3 52 356-422 142-202 (371)
95 PRK14300 chaperone protein Dna 87.5 0.43 9.2E-06 49.2 2.9 52 356-422 145-205 (372)
96 PRK09481 sspA stringent starva 87.4 3.3 7.1E-05 38.4 8.4 67 253-331 10-77 (211)
97 PF00684 DnaJ_CXXCXGXG: DnaJ c 87.2 0.86 1.9E-05 35.9 3.8 46 365-421 13-62 (66)
98 PRK14290 chaperone protein Dna 86.5 0.57 1.2E-05 48.2 3.2 51 357-421 150-211 (365)
99 cd03043 GST_N_1 GST_N family, 86.5 2.6 5.6E-05 33.0 6.2 61 267-331 8-70 (73)
100 cd03050 GST_N_Theta GST_N fami 86.2 4.7 0.0001 31.2 7.5 63 266-332 6-71 (76)
101 cd03057 GST_N_Beta GST_N famil 86.2 2.4 5.1E-05 32.9 5.8 60 269-332 9-71 (77)
102 COG0178 UvrA Excinuclease ATPa 86.1 0.87 1.9E-05 52.1 4.5 57 321-378 696-764 (935)
103 KOG2813 Predicted molecular ch 86.0 0.5 1.1E-05 48.8 2.4 20 358-377 189-208 (406)
104 PRK14284 chaperone protein Dna 85.9 0.71 1.5E-05 48.0 3.5 52 356-422 158-218 (391)
105 TIGR03140 AhpF alkyl hydropero 85.5 1.1 2.4E-05 47.6 4.7 64 247-325 114-183 (515)
106 PRK14285 chaperone protein Dna 85.0 0.7 1.5E-05 47.6 2.9 52 356-422 146-206 (365)
107 PRK14296 chaperone protein Dna 84.8 0.68 1.5E-05 47.9 2.7 56 356-422 149-213 (372)
108 PRK14289 chaperone protein Dna 84.5 0.81 1.8E-05 47.3 3.2 56 356-422 154-218 (386)
109 cd02949 TRX_NTR TRX domain, no 84.0 4 8.6E-05 33.2 6.4 59 251-323 13-80 (97)
110 cd03046 GST_N_GTT1_like GST_N 84.0 5.7 0.00012 30.3 7.0 59 271-333 11-71 (76)
111 PRK14285 chaperone protein Dna 83.9 0.96 2.1E-05 46.6 3.4 38 357-417 164-212 (365)
112 TIGR02187 GlrX_arch Glutaredox 83.9 5.6 0.00012 37.4 8.3 69 245-323 14-90 (215)
113 PRK14292 chaperone protein Dna 83.8 0.9 2E-05 46.7 3.1 55 356-421 139-203 (371)
114 PRK14280 chaperone protein Dna 83.8 0.86 1.9E-05 47.1 2.9 56 356-422 143-207 (376)
115 PRK14282 chaperone protein Dna 83.7 0.93 2E-05 46.7 3.2 55 357-422 153-216 (369)
116 TIGR02349 DnaJ_bact chaperone 83.7 0.91 2E-05 46.3 3.1 55 356-421 143-206 (354)
117 TIGR00862 O-ClC intracellular 83.6 4.2 9E-05 39.8 7.5 66 264-334 14-80 (236)
118 PRK14279 chaperone protein Dna 83.6 0.86 1.9E-05 47.5 2.9 50 357-421 174-232 (392)
119 PRK14286 chaperone protein Dna 83.6 0.87 1.9E-05 47.1 2.9 51 356-421 150-209 (372)
120 PF03960 ArsC: ArsC family; I 83.5 2.3 5.1E-05 36.1 5.0 39 267-305 4-43 (110)
121 PRK14295 chaperone protein Dna 83.4 0.86 1.9E-05 47.4 2.8 51 357-422 167-226 (389)
122 PRK14301 chaperone protein Dna 83.3 0.9 1.9E-05 47.0 2.9 50 357-421 145-203 (373)
123 PRK14296 chaperone protein Dna 83.2 0.91 2E-05 47.0 2.9 38 356-416 166-218 (372)
124 PRK14277 chaperone protein Dna 83.2 0.99 2.1E-05 46.8 3.1 55 357-422 156-219 (386)
125 PF13901 DUF4206: Domain of un 83.1 0.41 8.8E-06 45.6 0.3 88 312-421 102-195 (202)
126 PRK14276 chaperone protein Dna 83.1 0.9 1.9E-05 47.0 2.8 56 356-422 146-210 (380)
127 PRK15317 alkyl hydroperoxide r 83.0 2.3 4.9E-05 45.2 5.8 62 248-324 114-181 (517)
128 PRK14297 chaperone protein Dna 82.9 1 2.2E-05 46.6 3.0 56 356-422 148-212 (380)
129 PRK10767 chaperone protein Dna 82.9 1.1 2.3E-05 46.2 3.2 38 357-417 160-208 (371)
130 PRK14291 chaperone protein Dna 82.9 0.94 2E-05 46.9 2.8 51 356-421 156-214 (382)
131 PTZ00037 DnaJ_C chaperone prot 82.7 1 2.2E-05 47.6 3.1 17 199-215 43-59 (421)
132 TIGR01068 thioredoxin thioredo 82.7 16 0.00034 28.6 9.2 59 251-323 14-81 (101)
133 PRK14288 chaperone protein Dna 82.7 1.1 2.3E-05 46.3 3.2 50 357-421 141-198 (369)
134 PRK14288 chaperone protein Dna 82.5 1.1 2.3E-05 46.3 3.1 39 356-417 156-205 (369)
135 PRK14284 chaperone protein Dna 82.3 1 2.2E-05 46.8 2.8 38 356-416 175-223 (391)
136 PF00684 DnaJ_CXXCXGXG: DnaJ c 82.2 1.4 3E-05 34.8 2.9 25 356-380 15-54 (66)
137 cd03047 GST_N_2 GST_N family, 82.2 4.2 9.1E-05 31.3 5.6 61 267-331 7-70 (73)
138 PRK14282 chaperone protein Dna 82.1 1.3 2.7E-05 45.7 3.4 39 356-417 169-222 (369)
139 PRK14298 chaperone protein Dna 82.1 1.2 2.6E-05 46.1 3.3 56 356-422 141-205 (377)
140 PRK14294 chaperone protein Dna 82.1 1.2 2.6E-05 45.8 3.3 50 357-421 145-203 (366)
141 PRK14298 chaperone protein Dna 82.0 1.1 2.4E-05 46.4 3.0 38 357-417 159-211 (377)
142 PRK14286 chaperone protein Dna 81.9 1.1 2.5E-05 46.2 3.0 38 357-417 168-216 (372)
143 PRK14301 chaperone protein Dna 81.6 1.1 2.4E-05 46.3 2.8 38 357-417 162-210 (373)
144 PRK14278 chaperone protein Dna 81.5 1.1 2.5E-05 46.3 2.9 55 356-422 139-203 (378)
145 PRK14300 chaperone protein Dna 81.3 1.2 2.5E-05 46.1 2.8 38 356-416 162-210 (372)
146 PRK14281 chaperone protein Dna 81.3 1.3 2.7E-05 46.3 3.1 53 357-421 164-225 (397)
147 cd02989 Phd_like_TxnDC9 Phosdu 81.3 12 0.00025 32.0 8.5 63 248-324 19-89 (113)
148 PRK14295 chaperone protein Dna 81.1 1.3 2.8E-05 46.1 3.1 37 357-416 184-231 (389)
149 PRK14280 chaperone protein Dna 80.9 1.5 3.2E-05 45.4 3.4 38 356-416 160-212 (376)
150 TIGR02187 GlrX_arch Glutaredox 80.7 4.4 9.6E-05 38.1 6.3 54 265-326 141-203 (215)
151 PRK14293 chaperone protein Dna 80.6 1.3 2.8E-05 45.7 2.9 55 356-421 143-206 (374)
152 PRK14279 chaperone protein Dna 80.6 1.3 2.7E-05 46.2 2.8 39 356-417 190-239 (392)
153 PRK14294 chaperone protein Dna 80.2 1.4 3.1E-05 45.3 3.0 37 357-416 162-209 (366)
154 PRK14276 chaperone protein Dna 79.9 1.5 3.2E-05 45.5 3.0 38 356-416 163-215 (380)
155 PRK14290 chaperone protein Dna 79.0 1.7 3.6E-05 44.8 3.1 38 356-416 165-217 (365)
156 PRK14289 chaperone protein Dna 79.0 1.6 3.4E-05 45.3 2.9 38 356-416 171-223 (386)
157 PRK14297 chaperone protein Dna 78.7 1.8 3.9E-05 44.8 3.2 38 356-416 165-217 (380)
158 TIGR02349 DnaJ_bact chaperone 78.7 1.8 3.9E-05 44.1 3.2 38 357-417 161-213 (354)
159 PRK14278 chaperone protein Dna 78.6 1.9 4.2E-05 44.6 3.4 37 357-416 157-208 (378)
160 PTZ00037 DnaJ_C chaperone prot 77.5 1.8 3.9E-05 45.8 2.8 22 357-378 151-177 (421)
161 TIGR02642 phage_xxxx uncharact 76.4 1.9 4.1E-05 41.2 2.4 27 356-382 99-130 (186)
162 PRK14287 chaperone protein Dna 76.1 1.9 4.2E-05 44.5 2.6 39 356-417 155-208 (371)
163 PRK14281 chaperone protein Dna 76.0 2.2 4.8E-05 44.5 3.0 39 356-417 179-232 (397)
164 PRK14283 chaperone protein Dna 75.7 2.3 4.9E-05 44.0 3.0 55 357-422 147-210 (378)
165 cd02948 TRX_NDPK TRX domain, T 75.4 21 0.00046 29.4 8.2 58 250-322 16-83 (102)
166 PRK14277 chaperone protein Dna 75.2 2.3 4.9E-05 44.2 2.8 38 356-416 172-224 (386)
167 PF00085 Thioredoxin: Thioredo 75.0 26 0.00057 27.5 8.3 59 251-323 17-84 (103)
168 cd02957 Phd_like Phosducin (Ph 74.8 13 0.00029 31.2 6.9 63 252-329 25-95 (113)
169 PRK09381 trxA thioredoxin; Pro 74.7 19 0.0004 29.6 7.6 60 251-324 21-89 (109)
170 KOG2813 Predicted molecular ch 74.2 2.4 5.2E-05 44.1 2.6 55 356-421 198-262 (406)
171 KOG0712 Molecular chaperone (D 72.8 2.8 6.1E-05 43.5 2.8 57 356-422 127-193 (337)
172 PRK14293 chaperone protein Dna 72.6 3 6.6E-05 43.0 3.0 24 357-380 161-199 (374)
173 TIGR03143 AhpF_homolog putativ 72.5 8.7 0.00019 41.4 6.5 60 250-324 476-543 (555)
174 COG0484 DnaJ DnaJ-class molecu 72.3 3.3 7.1E-05 43.5 3.1 39 356-417 159-210 (371)
175 PRK14292 chaperone protein Dna 71.9 3.1 6.8E-05 42.8 2.9 38 356-416 157-209 (371)
176 TIGR00595 priA primosomal prot 70.4 3.5 7.6E-05 44.4 3.0 46 356-422 213-260 (505)
177 PRK14283 chaperone protein Dna 70.2 3.6 7.9E-05 42.5 3.0 38 356-416 163-215 (378)
178 cd02951 SoxW SoxW family; SoxW 69.5 16 0.00035 30.9 6.3 59 252-320 15-93 (125)
179 PF06953 ArsD: Arsenical resis 69.4 13 0.00029 33.3 5.9 59 274-333 32-95 (123)
180 cd02985 TRX_CDSP32 TRX family, 69.1 31 0.00067 28.5 7.8 62 251-323 15-84 (103)
181 KOG0406 Glutathione S-transfer 68.8 21 0.00045 35.5 7.6 72 251-333 7-79 (231)
182 cd02954 DIM1 Dim1 family; Dim1 68.8 27 0.00058 30.8 7.6 60 251-324 14-82 (114)
183 PRK14873 primosome assembly pr 68.6 4.4 9.6E-05 45.3 3.3 46 356-422 383-429 (665)
184 TIGR00630 uvra excinuclease AB 67.8 3.8 8.1E-05 47.6 2.7 23 356-378 736-770 (924)
185 TIGR01262 maiA maleylacetoacet 67.5 14 0.00031 33.6 5.9 61 268-332 7-71 (210)
186 PLN02817 glutathione dehydroge 67.3 18 0.0004 35.7 7.1 60 268-332 72-132 (265)
187 PRK15113 glutathione S-transfe 67.1 24 0.00053 32.7 7.5 71 252-331 4-77 (214)
188 cd02961 PDI_a_family Protein D 66.9 43 0.00092 25.7 7.8 54 251-318 15-77 (101)
189 PLN02395 glutathione S-transfe 66.6 30 0.00065 31.6 7.9 63 267-333 9-73 (215)
190 cd03077 GST_N_Alpha GST_N fami 66.4 37 0.00081 26.9 7.4 60 270-332 12-71 (79)
191 cd03002 PDI_a_MPD1_like PDI fa 66.3 32 0.00069 27.8 7.2 53 254-318 21-80 (109)
192 cd03075 GST_N_Mu GST_N family, 66.0 43 0.00094 26.8 7.8 63 270-332 11-77 (82)
193 PRK05580 primosome assembly pr 65.8 4.7 0.0001 44.9 2.9 46 356-422 381-428 (679)
194 PLN02473 glutathione S-transfe 65.7 29 0.00063 31.8 7.6 62 267-332 9-73 (214)
195 PTZ00051 thioredoxin; Provisio 65.5 42 0.00091 26.7 7.7 59 251-323 18-84 (98)
196 PLN02378 glutathione S-transfe 64.3 30 0.00066 32.2 7.6 61 267-332 18-79 (213)
197 COG4545 Glutaredoxin-related p 64.1 18 0.0004 30.6 5.3 64 266-330 9-82 (85)
198 cd02950 TxlA TRX-like protein 63.8 25 0.00054 31.3 6.6 61 251-323 20-90 (142)
199 cd02952 TRP14_like Human TRX-r 63.7 24 0.00053 31.1 6.4 63 252-318 22-96 (119)
200 PRK14291 chaperone protein Dna 62.9 6.3 0.00014 40.9 3.0 23 356-378 173-206 (382)
201 cd02955 SSP411 TRX domain, SSP 62.8 29 0.00062 30.7 6.7 67 251-323 15-94 (124)
202 COG1107 Archaea-specific RecJ- 62.0 5.2 0.00011 44.6 2.2 27 356-382 53-83 (715)
203 cd02963 TRX_DnaJ TRX domain, D 61.9 39 0.00085 28.4 7.2 59 251-323 24-92 (111)
204 TIGR02642 phage_xxxx uncharact 61.4 5.3 0.00011 38.3 2.0 31 366-417 98-128 (186)
205 cd02987 Phd_like_Phd Phosducin 60.4 36 0.00078 31.6 7.2 57 253-324 85-149 (175)
206 cd03079 GST_N_Metaxin2 GST_N f 59.3 81 0.0018 25.7 8.3 54 269-333 18-71 (74)
207 PRK10996 thioredoxin 2; Provis 59.1 62 0.0014 28.5 8.2 59 251-323 52-119 (139)
208 cd02959 ERp19 Endoplasmic reti 58.0 35 0.00075 29.4 6.3 38 251-294 19-63 (117)
209 PLN03165 chaperone protein dna 57.9 7.3 0.00016 34.5 2.1 23 357-379 76-98 (111)
210 PRK00635 excinuclease ABC subu 57.4 11 0.00023 46.9 4.1 57 321-378 1573-1641(1809)
211 PTZ00057 glutathione s-transfe 57.4 80 0.0017 29.1 9.0 72 253-331 4-77 (205)
212 PRK10877 protein disulfide iso 57.2 30 0.00065 33.5 6.4 20 311-330 201-221 (232)
213 KOG4244 Failed axon connection 56.4 42 0.00091 34.3 7.4 70 248-331 40-112 (281)
214 PF13728 TraF: F plasmid trans 56.2 32 0.0007 33.1 6.4 67 241-318 111-189 (215)
215 COG3340 PepE Peptidase E [Amin 56.1 72 0.0016 31.7 8.7 85 248-346 28-116 (224)
216 PF13719 zinc_ribbon_5: zinc-r 54.8 12 0.00026 26.6 2.4 32 367-412 2-33 (37)
217 smart00834 CxxC_CXXC_SSSS Puta 54.0 8.6 0.00019 26.8 1.6 9 404-412 26-34 (41)
218 TIGR02661 MauD methylamine deh 53.9 93 0.002 28.8 8.8 33 251-289 74-111 (189)
219 PF02798 GST_N: Glutathione S- 53.4 1.1E+02 0.0023 24.0 8.1 58 271-331 12-72 (76)
220 cd02984 TRX_PICOT TRX domain, 52.1 95 0.0021 24.5 7.6 59 251-323 14-81 (97)
221 KOG2767 Translation initiation 52.1 11 0.00023 39.8 2.5 78 298-417 40-131 (400)
222 cd03078 GST_N_Metaxin1_like GS 51.4 1.2E+02 0.0027 24.1 8.3 60 261-333 9-69 (73)
223 cd02996 PDI_a_ERp44 PDIa famil 50.3 85 0.0018 25.7 7.2 55 253-321 20-89 (108)
224 TIGR02740 TraF-like TraF-like 50.1 50 0.0011 32.9 6.8 65 243-318 159-235 (271)
225 cd03005 PDI_a_ERp46 PDIa famil 49.4 87 0.0019 24.8 7.0 60 248-321 13-84 (102)
226 cd02997 PDI_a_PDIR PDIa family 49.4 78 0.0017 25.1 6.7 58 252-321 18-86 (104)
227 cd02972 DsbA_family DsbA famil 49.0 49 0.0011 25.2 5.3 16 309-324 80-96 (98)
228 PRK14714 DNA polymerase II lar 49.0 12 0.00026 44.9 2.6 22 356-377 667-689 (1337)
229 TIGR02098 MJ0042_CXXC MJ0042 f 48.6 13 0.00027 26.0 1.7 31 368-412 3-33 (38)
230 cd02994 PDI_a_TMX PDIa family, 48.6 66 0.0014 25.8 6.2 46 265-318 24-77 (101)
231 cd03000 PDI_a_TMX3 PDIa family 48.5 59 0.0013 26.5 6.0 57 248-318 12-78 (104)
232 cd03001 PDI_a_P5 PDIa family, 48.0 1.2E+02 0.0025 24.1 7.5 55 250-318 16-78 (103)
233 cd03020 DsbA_DsbC_DsbG DsbA fa 47.8 68 0.0015 29.6 6.9 22 311-332 171-193 (197)
234 cd02998 PDI_a_ERp38 PDIa famil 46.5 1E+02 0.0022 24.3 7.0 52 253-318 20-81 (105)
235 PRK13728 conjugal transfer pro 46.5 69 0.0015 30.5 6.8 65 254-327 73-159 (181)
236 cd02988 Phd_like_VIAF Phosduci 44.9 77 0.0017 30.0 6.9 67 241-324 89-166 (192)
237 PF15616 TerY-C: TerY-C metal 44.9 19 0.0004 32.9 2.6 39 357-416 78-117 (131)
238 cd02956 ybbN ybbN protein fami 44.5 91 0.002 24.7 6.4 59 251-323 12-79 (96)
239 PF13098 Thioredoxin_2: Thiore 44.1 60 0.0013 26.4 5.4 22 251-278 5-28 (112)
240 PRK00349 uvrA excinuclease ABC 44.0 23 0.00049 41.5 3.8 24 356-379 738-773 (943)
241 cd03065 PDI_b_Calsequestrin_N 42.5 1.2E+02 0.0027 26.7 7.4 42 274-323 57-100 (120)
242 TIGR01126 pdi_dom protein disu 41.9 1.7E+02 0.0036 22.9 8.6 54 251-318 13-75 (102)
243 PRK00635 excinuclease ABC subu 41.2 26 0.00057 43.7 3.9 57 321-378 686-751 (1809)
244 cd03022 DsbA_HCCA_Iso DsbA fam 39.6 24 0.00052 31.5 2.5 60 274-333 126-188 (192)
245 COG1198 PriA Primosomal protei 39.4 27 0.00058 39.9 3.3 46 356-422 435-482 (730)
246 PF11331 DUF3133: Protein of u 39.2 21 0.00046 27.2 1.7 39 363-413 2-40 (46)
247 COG5494 Predicted thioredoxin/ 39.1 41 0.0009 33.6 4.2 69 252-334 11-85 (265)
248 cd03023 DsbA_Com1_like DsbA fa 39.0 16 0.00034 30.9 1.2 60 274-333 88-150 (154)
249 PF14354 Lar_restr_allev: Rest 38.8 22 0.00049 27.0 1.9 35 367-412 3-37 (61)
250 PF13462 Thioredoxin_4: Thiore 38.3 24 0.00051 30.5 2.2 23 310-332 134-156 (162)
251 PF14595 Thioredoxin_9: Thiore 37.8 41 0.0009 29.9 3.7 63 244-318 35-103 (129)
252 cd03003 PDI_a_ERdj5_N PDIa fam 37.0 2.1E+02 0.0045 23.0 7.5 56 252-321 19-83 (101)
253 cd03010 TlpA_like_DsbE TlpA-li 37.0 2.1E+02 0.0045 23.9 7.7 35 251-291 25-64 (127)
254 smart00659 RPOLCX RNA polymera 36.9 24 0.00053 26.3 1.8 10 404-413 19-28 (44)
255 cd03031 GRX_GRX_like Glutaredo 36.7 27 0.0006 32.0 2.4 16 367-382 99-114 (147)
256 COG2260 Predicted Zn-ribbon RN 36.5 17 0.00036 29.2 0.8 19 404-422 5-24 (59)
257 PF07092 DUF1356: Protein of u 36.4 18 0.00038 36.1 1.2 27 356-382 27-53 (238)
258 PLN02189 cellulose synthase 36.3 19 0.0004 42.6 1.5 42 356-412 34-84 (1040)
259 PF08792 A2L_zn_ribbon: A2L zi 35.7 23 0.00049 25.0 1.3 8 369-376 5-12 (33)
260 PF14205 Cys_rich_KTR: Cystein 34.9 31 0.00068 27.3 2.1 39 365-416 2-40 (55)
261 PF13717 zinc_ribbon_4: zinc-r 34.6 36 0.00078 24.2 2.3 31 368-412 3-33 (36)
262 cd03129 GAT1_Peptidase_E_like 34.4 3.7E+02 0.0081 25.1 9.7 81 251-345 29-111 (210)
263 KOG1695 Glutathione S-transfer 33.3 1E+02 0.0022 29.9 5.8 55 273-332 17-71 (206)
264 KOG0868 Glutathione S-transfer 33.2 94 0.002 30.5 5.5 55 273-331 19-76 (217)
265 cd02986 DLP Dim1 family, Dim1- 33.1 1.2E+02 0.0026 27.0 5.8 62 250-323 13-81 (114)
266 PTZ00062 glutaredoxin; Provisi 33.0 1.3E+02 0.0029 29.0 6.5 52 251-324 17-76 (204)
267 PF04216 FdhE: Protein involve 32.8 24 0.00053 35.1 1.6 22 356-377 172-207 (290)
268 cd02962 TMX2 TMX2 family; comp 32.7 1.4E+02 0.0031 27.3 6.4 63 252-324 48-122 (152)
269 PF09297 zf-NADH-PPase: NADH p 32.5 30 0.00066 23.6 1.5 9 403-411 20-28 (32)
270 cd02966 TlpA_like_family TlpA- 30.7 2.4E+02 0.0051 21.8 6.6 47 251-305 19-73 (116)
271 KOG1422 Intracellular Cl- chan 30.5 2.7E+02 0.0059 27.7 8.2 66 264-334 16-82 (221)
272 PF13905 Thioredoxin_8: Thiore 30.5 1.3E+02 0.0027 23.8 5.1 48 253-307 3-57 (95)
273 cd03004 PDI_a_ERdj5_C PDIa fam 30.4 1.6E+02 0.0034 23.7 5.8 55 252-320 20-83 (104)
274 PRK15412 thiol:disulfide inter 30.3 2.8E+02 0.0061 25.4 8.0 37 251-293 68-108 (185)
275 PF08271 TF_Zn_Ribbon: TFIIB z 30.0 40 0.00086 24.4 1.9 8 403-410 18-25 (43)
276 PRK10357 putative glutathione 29.9 2E+02 0.0043 26.1 6.9 60 267-331 7-68 (202)
277 TIGR02739 TraF type-F conjugat 29.9 1.2E+02 0.0026 30.4 5.8 67 241-318 141-219 (256)
278 PRK07220 DNA topoisomerase I; 29.4 60 0.0013 36.9 4.1 16 357-372 590-615 (740)
279 PRK02935 hypothetical protein; 29.3 36 0.00078 30.4 1.8 26 367-413 70-95 (110)
280 PF06764 DUF1223: Protein of u 29.3 14 0.0003 35.7 -0.8 16 313-328 71-87 (202)
281 cd03009 TryX_like_TryX_NRX Try 29.2 2.1E+02 0.0046 24.1 6.6 17 251-273 18-34 (131)
282 TIGR02605 CxxC_CxxC_SSSS putat 29.2 35 0.00075 25.3 1.5 10 404-413 26-35 (52)
283 PRK13972 GSH-dependent disulfi 28.7 2.9E+02 0.0064 25.4 7.9 58 270-331 10-77 (215)
284 PRK05282 (alpha)-aspartyl dipe 28.3 3.6E+02 0.0079 26.5 8.8 46 245-291 24-70 (233)
285 PF01873 eIF-5_eIF-2B: Domain 27.5 33 0.00072 30.8 1.3 54 314-412 69-122 (125)
286 PRK03988 translation initiatio 27.2 58 0.0013 29.8 2.9 35 366-416 101-135 (138)
287 PF10571 UPF0547: Uncharacteri 27.0 42 0.00091 22.5 1.4 17 406-422 2-21 (26)
288 smart00653 eIF2B_5 domain pres 26.4 51 0.0011 29.0 2.3 30 366-411 79-108 (110)
289 PRK00564 hypA hydrogenase nick 26.4 31 0.00068 30.3 1.0 9 404-412 88-96 (117)
290 PLN02436 cellulose synthase A 26.4 41 0.00088 40.1 2.1 27 356-382 36-71 (1094)
291 PF04236 Transp_Tc5_C: Tc5 tra 26.2 37 0.0008 27.3 1.2 20 403-422 26-47 (63)
292 TIGR00311 aIF-2beta translatio 26.1 64 0.0014 29.4 2.9 35 366-416 96-130 (133)
293 PLN00410 U5 snRNP protein, DIM 25.7 1E+02 0.0022 28.3 4.2 58 251-321 23-89 (142)
294 cd02965 HyaE HyaE family; HyaE 24.9 3E+02 0.0064 24.3 6.8 61 251-325 27-98 (111)
295 PF10865 DUF2703: Domain of un 24.7 2.6E+02 0.0056 25.2 6.4 71 274-382 32-103 (120)
296 PRK03564 formate dehydrogenase 24.6 74 0.0016 32.9 3.4 11 365-375 210-220 (309)
297 KOG0910 Thioredoxin-like prote 24.3 65 0.0014 30.2 2.7 60 250-323 60-128 (150)
298 PLN02195 cellulose synthase A 24.2 45 0.00097 39.3 1.9 41 356-411 6-55 (977)
299 cd03146 GAT1_Peptidase_E Type 24.1 3.9E+02 0.0084 25.3 7.9 85 245-345 24-110 (212)
300 PRK11752 putative S-transferas 24.0 2.4E+02 0.0053 27.5 6.7 72 248-331 39-123 (264)
301 PRK04023 DNA polymerase II lar 23.8 67 0.0015 38.2 3.2 43 356-422 626-670 (1121)
302 COG0625 Gst Glutathione S-tran 23.5 2.4E+02 0.0052 25.9 6.3 59 269-331 9-70 (211)
303 PF13899 Thioredoxin_7: Thiore 23.4 80 0.0017 24.9 2.7 18 250-273 16-33 (82)
304 cd02958 UAS UAS family; UAS is 23.3 2.1E+02 0.0046 23.9 5.4 56 251-318 17-82 (114)
305 PLN02638 cellulose synthase A 23.3 46 0.00099 39.7 1.8 27 356-382 17-52 (1079)
306 PRK00420 hypothetical protein; 23.0 48 0.001 29.5 1.5 10 404-413 40-49 (112)
307 PRK03147 thiol-disulfide oxido 23.0 3.4E+02 0.0075 23.7 7.0 36 250-291 60-103 (173)
308 PF09723 Zn-ribbon_8: Zinc rib 22.6 55 0.0012 23.8 1.5 13 404-416 26-38 (42)
309 PF11023 DUF2614: Protein of u 22.4 46 0.00099 29.9 1.2 27 366-413 68-94 (114)
310 PRK00114 hslO Hsp33-like chape 22.2 4.9E+02 0.011 26.3 8.7 107 194-334 180-290 (293)
311 PF10568 Tom37: Outer mitochon 22.2 4.1E+02 0.009 21.4 6.6 51 270-332 16-70 (72)
312 KOG4218 Nuclear hormone recept 22.1 41 0.00089 35.7 1.0 28 356-383 15-48 (475)
313 TIGR00385 dsbE periplasmic pro 22.1 5.7E+02 0.012 23.0 8.3 36 250-291 62-101 (173)
314 cd02992 PDI_a_QSOX PDIa family 22.1 3E+02 0.0064 23.3 6.1 54 253-318 21-84 (114)
315 cd03011 TlpA_like_ScsD_MtbDsbE 22.0 1.5E+02 0.0034 24.3 4.3 16 252-273 21-36 (123)
316 PRK05978 hypothetical protein; 21.9 46 0.00099 31.0 1.2 18 404-421 33-58 (148)
317 TIGR02738 TrbB type-F conjugat 21.9 2.1E+02 0.0046 26.1 5.5 35 250-291 50-89 (153)
318 PRK10542 glutathionine S-trans 21.9 2.4E+02 0.0052 25.3 5.9 57 272-332 12-72 (201)
319 COG3118 Thioredoxin domain-con 21.8 2.7E+02 0.0059 28.9 6.7 65 248-326 40-113 (304)
320 PRK00293 dipZ thiol:disulfide 21.8 2.8E+02 0.0062 30.5 7.4 58 251-318 474-540 (571)
321 PF04566 RNA_pol_Rpb2_4: RNA p 21.4 53 0.0012 26.1 1.3 17 316-332 1-17 (63)
322 PRK00420 hypothetical protein; 21.2 71 0.0015 28.5 2.2 31 340-377 14-50 (112)
323 PRK12336 translation initiatio 21.1 87 0.0019 30.1 2.9 33 366-414 97-129 (201)
324 PRK14892 putative transcriptio 21.0 60 0.0013 28.3 1.6 9 366-374 20-28 (99)
325 cd02999 PDI_a_ERp44_like PDIa 20.7 3.5E+02 0.0076 22.3 6.2 53 251-317 18-77 (100)
326 KOG0907 Thioredoxin [Posttrans 20.4 1.6E+02 0.0034 25.5 4.1 64 251-328 21-96 (106)
327 PF01323 DSBA: DSBA-like thior 20.2 30 0.00065 30.8 -0.4 62 272-333 124-189 (193)
328 COG1107 Archaea-specific RecJ- 20.1 71 0.0015 36.1 2.3 18 357-374 69-87 (715)
329 PRK10954 periplasmic protein d 20.0 40 0.00088 31.6 0.4 55 273-327 125-182 (207)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-64 Score=489.30 Aligned_cols=254 Identities=42% Similarity=0.721 Sum_probs=190.1
Q ss_pred hhhhhhhhhcCCcccCCCCCCCCCCCCCcchHHhhccCCCCCCCC--CCCCCCCCccccccCCCCCCCCCCCCccccccc
Q 045109 86 KEWSNMIQEKIPKVVPKTPVRTPPGEPETINAWELMEGLEDVSPL--RSPNHFRSFSFDFARGPSSLLDSDPPMSKLCED 163 (423)
Q Consensus 86 ~~~~~~~~~~~~~~~~~tp~~tp~~epe~IN~WELM~GLed~~~~--~~p~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~ 163 (423)
+.|.++...+++.+ ....+|..||+||+||||.||++..++ ++|....++|+....... .++
T Consensus 22 ~~~~~~k~~~~~~~----~~~~~~~~~~~i~s~e~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~-------- 85 (281)
T KOG2824|consen 22 RVTVSGKESKIAPI----RDSSSPTGPEVINSWELMLDLDDELHRSCKTPITPTSVSLRVKALNL----LGK-------- 85 (281)
T ss_pred ceeccccccccccc----ccCCCCCchhhhhhhhhccCccccccccccCCCCCcccccccccccc----ccc--------
Confidence 34444444444433 334667799999999999999999885 777665555443222211 000
Q ss_pred hhhhhhhhhhHhhhcCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHhhhcCCCCCCcCCCCccCcchhhhchhhhccC
Q 045109 164 VSAERKTMSMWLQMANGDDHGDSESNSKPFALEFDPD---VIKTFRKSFQELSPRHPFHLRPLENDKLPAALDSLDVKKS 240 (423)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdp~---~is~frkal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (423)
...+.+|+|+... . ...+.++...+|++ ++..|++
T Consensus 86 --s~~~~~p~~~~~~------~-~~~~~~~l~~~~~~~~~~~~e~~~--------------------------------- 123 (281)
T KOG2824|consen 86 --SKGSWPPVILKPE------K-RLSSESGLKELDKSPNKLLLEFKE--------------------------------- 123 (281)
T ss_pred --ccCcCCccccccc------c-cccccccccccccccccchhhhhh---------------------------------
Confidence 0012244444332 0 00112345555554 1111111
Q ss_pred hhHHHhhhcCCCcEEEEEeCCCCCCCCCCcHHHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCC
Q 045109 241 NGAVLDHKCGKEKLVVYFTSLRGIRKTYEDCCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGK 320 (423)
Q Consensus 241 ~~~~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdG 320 (423)
+-.+.++++||||||||||||+||++|+.||+||++++|.|+||||+||..|++||+++|+......++|||||+|
T Consensus 124 ----~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~G 199 (281)
T KOG2824|consen 124 ----VCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKG 199 (281)
T ss_pred ----cCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEcc
Confidence 0125678899999999999999999999999999999999999999999999999999999855567999999999
Q ss_pred EEEcchHHHHHHHHcCchHHHHcccccccCCCCCCCccccccCccceEeCCCCCCcceeccccchhhhcccCCCCccccC
Q 045109 321 KYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGRGNVGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEA 400 (423)
Q Consensus 321 e~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~ 400 (423)
+||||+++|++|||.|+|.+||++++.. ..+.|++|||.||+||..||||||++.+. ..
T Consensus 200 ryIGgaeeV~~LnE~GkL~~lL~~~p~~------~~~~C~~CGg~rFlpC~~C~GS~kv~~~~---------------~~ 258 (281)
T KOG2824|consen 200 RYIGGAEEVVRLNEEGKLGKLLKGIPCE------GGGVCESCGGARFLPCSNCHGSCKVHEEE---------------ED 258 (281)
T ss_pred EEeccHHHhhhhhhcchHHHHHhcCCCC------CCCcCCCcCCcceEecCCCCCceeeeeec---------------cC
Confidence 9999999999999999999999999932 25789999999999999999999999851 12
Q ss_pred ccceeeCCCCCCCCcccCCCCC
Q 045109 401 DFGFQRCPDCNENGLTRCPICC 422 (423)
Q Consensus 401 ~~~~~RC~~CNENGLirCp~C~ 422 (423)
+++|+||++||||||||||+|+
T Consensus 259 ~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 259 DGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCcEEECcccCCCCceeCCccC
Confidence 4579999999999999999997
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=1.5e-49 Score=356.94 Aligned_cols=147 Identities=55% Similarity=1.078 Sum_probs=134.8
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
+||||||||||||+|+..|.+||+||++++|.|+|+||+|+.++++||+++++..+++.|||||||+|+||||+++|++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 69999999999999988888899999999999999999999999999999998777789999999999999999999999
Q ss_pred HHcCchHHHHcccccccCCCCCCCccccccCccceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCC
Q 045109 333 HEEGQLEKVVEGCEMIDDGGRGNVGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNE 412 (423)
Q Consensus 333 hEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNE 412 (423)
|++|+|+++|++++... ....|++|||+|||||..|+||||++.++.+ +.+.++||++|||
T Consensus 81 ~e~G~L~~lL~~~~~~~-----~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~--------------~~~~~~rC~~Cne 141 (147)
T cd03031 81 NESGELRKLLKGIRARA-----GGGVCEGCGGARFVPCSECNGSCKVFAENAT--------------AAGGFLRCPECNE 141 (147)
T ss_pred HHcCCHHHHHhhccccc-----CCCCCCCCCCcCeEECCCCCCcceEEeccCc--------------ccccEEECCCCCc
Confidence 99999999999986532 2567999999999999999999999987421 2457999999999
Q ss_pred CCcccC
Q 045109 413 NGLTRC 418 (423)
Q Consensus 413 NGLirC 418 (423)
||||||
T Consensus 142 ngl~~c 147 (147)
T cd03031 142 NGLVRC 147 (147)
T ss_pred cccccC
Confidence 999999
No 3
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.90 E-value=6.7e-24 Score=177.51 Aligned_cols=91 Identities=22% Similarity=0.303 Sum_probs=86.1
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.|+||+|||+|+|+++..|+.|++||++++|.|+++||+++++.+++|+++.+...+.+|+|||||+|+||||+|++.+|
T Consensus 1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999987544678999999999999999999999
Q ss_pred HHcCchHHHHc
Q 045109 333 HEEGQLEKVVE 343 (423)
Q Consensus 333 hEsGeL~kLL~ 343 (423)
+++|+|.++|+
T Consensus 81 ~e~g~L~~lLk 91 (92)
T cd03030 81 KENNTLEEFLK 91 (92)
T ss_pred HhCCCHHHHhC
Confidence 99999999986
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.85 E-value=4.8e-21 Score=166.54 Aligned_cols=101 Identities=15% Similarity=0.295 Sum_probs=85.6
Q ss_pred hhHHHhhhcCCCcEEEEEeCCCCCC-CCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 241 NGAVLDHKCGKEKLVVYFTSLRGIR-KTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 241 ~~~~v~~li~~~kVVIYtTSLrGIR-KT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
...+|+++|.+++|||| ++|.. .++||+|. |+++|..++|.|.++||..+.+.+++|.++ ++++|||||||
T Consensus 4 ~~~~v~~~I~~~~Vvvf---~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~----sg~~TVPQIFI 76 (115)
T PRK10824 4 TIEKIQRQIAENPILLY---MKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKY----ANWPTFPQLWV 76 (115)
T ss_pred HHHHHHHHHhcCCEEEE---ECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHH----hCCCCCCeEEE
Confidence 45678899999999999 33332 25999998 899999999999999998776555555554 57899999999
Q ss_pred CCEEEcchHHHHHHHHcCchHHHHcccccc
Q 045109 319 GKKYIGGAEEIRRMHEEGQLEKVVEGCEMI 348 (423)
Q Consensus 319 dGe~IGGaDEV~~LhEsGeL~kLL~~~~~~ 348 (423)
||+||||+|++.+|+++|+|.++|+.+++.
T Consensus 77 ~G~~IGG~ddl~~l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 77 DGELVGGCDIVIEMYQRGELQQLIKETAAK 106 (115)
T ss_pred CCEEEcChHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999999999999999999887764
No 5
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.85 E-value=4.3e-21 Score=161.07 Aligned_cols=94 Identities=22% Similarity=0.429 Sum_probs=83.1
Q ss_pred hhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEc
Q 045109 246 DHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIG 324 (423)
Q Consensus 246 ~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IG 324 (423)
+++|.+++|+|| ++++||+|. +|++|++++|.|+++||+.+.. ..++++.+...+|+.|+|||||+|++||
T Consensus 2 ~~~i~~~~Vvvy-------sk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~-~~~~~~~l~~~tg~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 2 RRMVSEKAVVIF-------SRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPA-GKDIENALSRLGCSPAVPAVFVGGKLVG 73 (99)
T ss_pred hhhhccCCEEEE-------ECCCCHHHHHHHHHHHHcCCCCEEEEcCCCcc-HHHHHHHHHHhcCCCCcCeEEECCEEEc
Confidence 467899999999 789999998 8999999999999999987655 3456666666678899999999999999
Q ss_pred chHHHHHHHHcCchHHHHccccc
Q 045109 325 GAEEIRRMHEEGQLEKVVEGCEM 347 (423)
Q Consensus 325 GaDEV~~LhEsGeL~kLL~~~~~ 347 (423)
|++++++|+++|+|+++|+.+++
T Consensus 74 G~ddl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 74 GLENVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred CHHHHHHHHHcCCHHHHHHHhCc
Confidence 99999999999999999987654
No 6
>PHA03050 glutaredoxin; Provisional
Probab=99.82 E-value=2.9e-20 Score=159.10 Aligned_cols=99 Identities=19% Similarity=0.370 Sum_probs=83.1
Q ss_pred hHHHhhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCC---cEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE
Q 045109 242 GAVLDHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGV---RVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF 317 (423)
Q Consensus 242 ~~~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV---~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF 317 (423)
..+|++++.+++|+|| ++++||+|. +|++|+.++| .|+++||+.. ....++++.+...+|+.||||||
T Consensus 3 ~~~v~~~i~~~~V~vy-------s~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~-~~~~~~~~~l~~~tG~~tVP~If 74 (108)
T PHA03050 3 EEFVQQRLANNKVTIF-------VKFTCPFCRNALDILNKFSFKRGAYEIVDIKEF-KPENELRDYFEQITGGRTVPRIF 74 (108)
T ss_pred HHHHHHHhccCCEEEE-------ECCCChHHHHHHHHHHHcCCCcCCcEEEECCCC-CCCHHHHHHHHHHcCCCCcCEEE
Confidence 3578889999999999 788999998 9999999999 7999999741 11234444444445678999999
Q ss_pred eCCEEEcchHHHHHHHHcCchHHHHcccccc
Q 045109 318 VGKKYIGGAEEIRRMHEEGQLEKVVEGCEMI 348 (423)
Q Consensus 318 VdGe~IGGaDEV~~LhEsGeL~kLL~~~~~~ 348 (423)
|||++|||++++++|+++|+|.++|+.++++
T Consensus 75 I~g~~iGG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 75 FGKTSIGGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred ECCEEEeChHHHHHHHHcCCHHHHHHHcccc
Confidence 9999999999999999999999999988765
No 7
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.82 E-value=6.6e-20 Score=153.41 Aligned_cols=93 Identities=19% Similarity=0.372 Sum_probs=80.1
Q ss_pred HHHhhhcCCCcEEEEEeCCCCC-CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCC
Q 045109 243 AVLDHKCGKEKLVVYFTSLRGI-RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGK 320 (423)
Q Consensus 243 ~~v~~li~~~kVVIYtTSLrGI-RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdG 320 (423)
.+|+.++.+++||||. +|. ..++||+|. ||++|+.+||.|+++||..+.+.+++|.++. |+.|||||||||
T Consensus 3 ~~v~~~i~~~~Vvvf~---kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t----g~~tvP~vfi~g 75 (97)
T TIGR00365 3 ERIKEQIKENPVVLYM---KGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS----NWPTIPQLYVKG 75 (97)
T ss_pred HHHHHHhccCCEEEEE---ccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh----CCCCCCEEEECC
Confidence 4577899999999993 332 247899998 9999999999999999987777777777654 467999999999
Q ss_pred EEEcchHHHHHHHHcCchHHHH
Q 045109 321 KYIGGAEEIRRMHEEGQLEKVV 342 (423)
Q Consensus 321 e~IGGaDEV~~LhEsGeL~kLL 342 (423)
++|||++++++|+++|+|.++|
T Consensus 76 ~~iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 76 EFVGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred EEEeChHHHHHHHHCcChHHhC
Confidence 9999999999999999999986
No 8
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8e-20 Score=156.60 Aligned_cols=97 Identities=25% Similarity=0.460 Sum_probs=88.7
Q ss_pred HHHhhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCE
Q 045109 243 AVLDHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK 321 (423)
Q Consensus 243 ~~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe 321 (423)
.++..++.+++|||| +|++|++|. +|.||..+++.+..++++.+ +...||+++|...++.+|||+|||+|+
T Consensus 5 ~~v~~~i~~~~VVif-------SKs~C~~c~~~k~ll~~~~v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP~vFI~Gk 76 (104)
T KOG1752|consen 5 AKVRKMISENPVVIF-------SKSSCPYCHRAKELLSDLGVNPKVVELDED-EDGSEIQKALKKLTGQRTVPNVFIGGK 76 (104)
T ss_pred HHHHHHhhcCCEEEE-------ECCcCchHHHHHHHHHhCCCCCEEEEccCC-CCcHHHHHHHHHhcCCCCCCEEEECCE
Confidence 456778999999999 899999998 89999999999888888766 567799999998999999999999999
Q ss_pred EEcchHHHHHHHHcCchHHHHccccc
Q 045109 322 YIGGAEEIRRMHEEGQLEKVVEGCEM 347 (423)
Q Consensus 322 ~IGGaDEV~~LhEsGeL~kLL~~~~~ 347 (423)
+|||++++++||.+|+|.++|+.+.+
T Consensus 77 ~iGG~~dl~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 77 FIGGASDLMALHKSGELVPLLKEAGA 102 (104)
T ss_pred EEcCHHHHHHHHHcCCHHHHHHHhhc
Confidence 99999999999999999999998764
No 9
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.78 E-value=8.8e-19 Score=143.85 Aligned_cols=88 Identities=23% Similarity=0.401 Sum_probs=74.8
Q ss_pred hhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEc
Q 045109 246 DHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIG 324 (423)
Q Consensus 246 ~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IG 324 (423)
+.++.+++||||..|. ...++|++|. ++++|+.+||.|+++||..+.+.+++|.++. |..|+|||||||++||
T Consensus 2 ~~~i~~~~vvvf~k~~--~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~----g~~tvP~vfi~g~~iG 75 (90)
T cd03028 2 KKLIKENPVVLFMKGT--PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS----NWPTFPQLYVNGELVG 75 (90)
T ss_pred hhhhccCCEEEEEcCC--CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh----CCCCCCEEEECCEEEe
Confidence 4678899999992211 1346899998 8999999999999999988877777777765 4679999999999999
Q ss_pred chHHHHHHHHcCchH
Q 045109 325 GAEEIRRMHEEGQLE 339 (423)
Q Consensus 325 GaDEV~~LhEsGeL~ 339 (423)
|++++++||++|+|+
T Consensus 76 G~~~l~~l~~~g~L~ 90 (90)
T cd03028 76 GCDIVKEMHESGELQ 90 (90)
T ss_pred CHHHHHHHHHcCCcC
Confidence 999999999999985
No 10
>PTZ00062 glutaredoxin; Provisional
Probab=99.73 E-value=1.6e-17 Score=156.87 Aligned_cols=96 Identities=20% Similarity=0.387 Sum_probs=83.5
Q ss_pred hHHHhhhcCCCcEEEEEeCCCCCC-CCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeC
Q 045109 242 GAVLDHKCGKEKLVVYFTSLRGIR-KTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVG 319 (423)
Q Consensus 242 ~~~v~~li~~~kVVIYtTSLrGIR-KT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVd 319 (423)
..+|+.+|.+++|||| ++|.+ .++|++|+ ++++|+.++|.|.++||..+.+.+++|.++ ++++|+||||||
T Consensus 103 ~~~v~~li~~~~Vvvf---~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~----sg~~TvPqVfI~ 175 (204)
T PTZ00062 103 VEKIERLIRNHKILLF---MKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVY----SNWPTYPQLYVN 175 (204)
T ss_pred HHHHHHHHhcCCEEEE---EccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHH----hCCCCCCeEEEC
Confidence 4567789999999999 56643 36899998 899999999999999999887766666664 467899999999
Q ss_pred CEEEcchHHHHHHHHcCchHHHHcc
Q 045109 320 KKYIGGAEEIRRMHEEGQLEKVVEG 344 (423)
Q Consensus 320 Ge~IGGaDEV~~LhEsGeL~kLL~~ 344 (423)
|++|||++++++|+++|+|+++|..
T Consensus 176 G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 176 GELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred CEEEcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999999964
No 11
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.1e-17 Score=141.25 Aligned_cols=97 Identities=19% Similarity=0.374 Sum_probs=85.8
Q ss_pred hHHHhhhcCCCcEEEEEeCCCCCCC-CCCcHHH-HHHHHHhCC-CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 242 GAVLDHKCGKEKLVVYFTSLRGIRK-TYEDCCH-VRVILKGLG-VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 242 ~~~v~~li~~~kVVIYtTSLrGIRK-T~c~Cc~-VK~LL~~~g-V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
-.+|+..+.+++|||| |+|..+ +.|.+.. +.+||..+| |+|..+||-.+++.|+.|++. +.|+|+||+||
T Consensus 5 ~~~I~~~i~~n~VvLF---MKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~----s~WPT~PQLyi 77 (105)
T COG0278 5 LDRIQKQIKENPVVLF---MKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEY----SNWPTFPQLYV 77 (105)
T ss_pred HHHHHHHhhcCceEEE---ecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhh----cCCCCCceeeE
Confidence 3567889999999999 999865 5688876 899999999 899999998887777777765 46999999999
Q ss_pred CCEEEcchHHHHHHHHcCchHHHHccc
Q 045109 319 GKKYIGGAEEIRRMHEEGQLEKVVEGC 345 (423)
Q Consensus 319 dGe~IGGaDEV~~LhEsGeL~kLL~~~ 345 (423)
+|++|||+|.+.+|.++|+|+++|+..
T Consensus 78 ~GEfvGG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 78 NGEFVGGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred CCEEeccHHHHHHHHHcchHHHHHHhc
Confidence 999999999999999999999999853
No 12
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.70 E-value=7.1e-17 Score=127.45 Aligned_cols=78 Identities=23% Similarity=0.587 Sum_probs=71.2
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
|+|| .+++|++|. |+++|+.+||.|+++|++++...++++.++.+ ..++|+|||+|++|||++++.+|
T Consensus 1 v~ly-------~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g----~~~vP~i~i~g~~igg~~~~~~~ 69 (79)
T TIGR02181 1 VTIY-------TKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSG----RRTVPQIFIGDVHVGGCDDLYAL 69 (79)
T ss_pred CEEE-------ecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhC----CCCcCEEEECCEEEcChHHHHHH
Confidence 6799 678899988 99999999999999999999888888887654 57999999999999999999999
Q ss_pred HHcCchHHHH
Q 045109 333 HEEGQLEKVV 342 (423)
Q Consensus 333 hEsGeL~kLL 342 (423)
+++|+|+++|
T Consensus 70 ~~~g~l~~~l 79 (79)
T TIGR02181 70 DREGKLDPLL 79 (79)
T ss_pred HHcCChhhhC
Confidence 9999999886
No 13
>PRK10638 glutaredoxin 3; Provisional
Probab=99.68 E-value=2.4e-16 Score=126.68 Aligned_cols=80 Identities=20% Similarity=0.474 Sum_probs=71.7
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
+|+|| .+.+|++|. |+.+|+.++|.|+++||+.+.+.++++.++. +..++|+|||||++|||++++++
T Consensus 3 ~v~ly-------~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~----g~~~vP~i~~~g~~igG~~~~~~ 71 (83)
T PRK10638 3 NVEIY-------TKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRS----GRTTVPQIFIDAQHIGGCDDLYA 71 (83)
T ss_pred cEEEE-------ECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHh----CCCCcCEEEECCEEEeCHHHHHH
Confidence 69999 678999998 9999999999999999987776677776654 45799999999999999999999
Q ss_pred HHHcCchHHHHc
Q 045109 332 MHEEGQLEKVVE 343 (423)
Q Consensus 332 LhEsGeL~kLL~ 343 (423)
|+++|+|.++|+
T Consensus 72 ~~~~g~l~~~~~ 83 (83)
T PRK10638 72 LDARGGLDPLLK 83 (83)
T ss_pred HHHcCCHHHHhC
Confidence 999999999985
No 14
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.63 E-value=1.8e-15 Score=117.39 Aligned_cols=73 Identities=26% Similarity=0.572 Sum_probs=65.0
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCC-CCCceEeCCEEEcchHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGG-GLPRVFVGKKYIGGAEEIR 330 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~-TVPQVFVdGe~IGGaDEV~ 330 (423)
+|+|| .+++|++|. |+.+|+.++|.|+++||+.+.+.+++|.++.+ .. ++|+|||+|++|||+++++
T Consensus 1 ~i~ly-------~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~----~~~~vP~v~i~g~~igg~~~~~ 69 (75)
T cd03418 1 KVEIY-------TKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG----GRRTVPQIFIGDVHIGGCDDLY 69 (75)
T ss_pred CEEEE-------eCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC----CCCccCEEEECCEEEeChHHHH
Confidence 58999 678899998 89999999999999999988777777777665 34 8999999999999999999
Q ss_pred HHHHcC
Q 045109 331 RMHEEG 336 (423)
Q Consensus 331 ~LhEsG 336 (423)
+|+++|
T Consensus 70 ~~~~~g 75 (75)
T cd03418 70 ALERKG 75 (75)
T ss_pred HHHhCc
Confidence 999987
No 15
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.60 E-value=4e-15 Score=116.50 Aligned_cols=72 Identities=25% Similarity=0.532 Sum_probs=64.8
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHH
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIR 330 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~ 330 (423)
++|+|| .+..|++|. |+++|+.+||.|+++|+..+...+++|.++.+ ..++|+|||||++|||+++++
T Consensus 1 ~~v~ly-------~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g----~~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 1 GRVTIY-------SRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG----SSVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred CEEEEE-------ecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC----CCCcCEEEECCEEEeCHHHHH
Confidence 479999 567899887 99999999999999999988888889888875 468999999999999999999
Q ss_pred HHHH
Q 045109 331 RMHE 334 (423)
Q Consensus 331 ~LhE 334 (423)
+|++
T Consensus 70 ~~~~ 73 (73)
T cd03027 70 SLEE 73 (73)
T ss_pred hhcC
Confidence 9874
No 16
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.60 E-value=2.7e-15 Score=117.73 Aligned_cols=81 Identities=26% Similarity=0.535 Sum_probs=67.8
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCc--EEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHH
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVR--VDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIR 330 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~--yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~ 330 (423)
|++| .+++|++|. ++.+|+++++. |..++|+.+. ...++++.+...++..++|+|||+|++|||++++.
T Consensus 1 V~~f-------~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~-~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~ 72 (84)
T TIGR02180 1 VVVF-------SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLS-NGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLL 72 (84)
T ss_pred CEEE-------ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCC-ChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHH
Confidence 6788 678999888 89999999998 8888887543 24455555555556789999999999999999999
Q ss_pred HHHHcCchHHHH
Q 045109 331 RMHEEGQLEKVV 342 (423)
Q Consensus 331 ~LhEsGeL~kLL 342 (423)
+|+++|+|..+|
T Consensus 73 ~~~~~g~l~~~~ 84 (84)
T TIGR02180 73 ALYKSGKLAELL 84 (84)
T ss_pred HHHHcCChhhhC
Confidence 999999999886
No 17
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-14 Score=139.44 Aligned_cols=97 Identities=19% Similarity=0.327 Sum_probs=84.1
Q ss_pred hhHHHhhhcCCCcEEEEEeCCCCCCC-CCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 241 NGAVLDHKCGKEKLVVYFTSLRGIRK-TYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 241 ~~~~v~~li~~~kVVIYtTSLrGIRK-T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
....++.++..++|+|| |+|++. +.|.+.+ +..||+.++|+|..+||..|.+.|+.|+ ..+.|+|+|||||
T Consensus 128 ~~~~l~~lv~a~~v~lF---mKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK----~fSdWPTfPQlyI 200 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLF---MKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLK----EFSDWPTFPQLYV 200 (227)
T ss_pred HHHHHHHhcccCeEEEE---ecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhh----hhcCCCCccceeE
Confidence 34567779999999999 999875 5688776 8999999999999999998865555544 4567999999999
Q ss_pred CCEEEcchHHHHHHHHcCchHHHHcc
Q 045109 319 GKKYIGGAEEIRRMHEEGQLEKVVEG 344 (423)
Q Consensus 319 dGe~IGGaDEV~~LhEsGeL~kLL~~ 344 (423)
+|++|||+|.+..||++|+|+..|+.
T Consensus 201 ~GEFiGGlDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 201 KGEFIGGLDILKEMHEKGELVYTLKE 226 (227)
T ss_pred CCEeccCcHHHHHHhhcccHHHHhhc
Confidence 99999999999999999999999975
No 18
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.56 E-value=1e-14 Score=114.47 Aligned_cols=81 Identities=32% Similarity=0.660 Sum_probs=66.2
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
+|++| .+.+||.|. |+.+|+.+++.|..++++.+.. ..+++..+...++..++|+|||+|++|||++++.+
T Consensus 1 ~v~~y-------~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~ 72 (82)
T cd03419 1 PVVVF-------SKSYCPYCKRAKSLLKELGVKPAVVELDQHED-GSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMA 72 (82)
T ss_pred CEEEE-------EcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCC-hHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHH
Confidence 58999 678999988 8999999999999888876533 23344444334457799999999999999999999
Q ss_pred HHHcCchHHH
Q 045109 332 MHEEGQLEKV 341 (423)
Q Consensus 332 LhEsGeL~kL 341 (423)
|.++|+|+++
T Consensus 73 ~~~~g~l~~~ 82 (82)
T cd03419 73 LHKSGKLVKL 82 (82)
T ss_pred HHHcCCccCC
Confidence 9999999864
No 19
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.4e-14 Score=117.70 Aligned_cols=77 Identities=25% Similarity=0.544 Sum_probs=64.4
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
.|+|| ++++||+|. +|++|+.+||.|+++|+.++.. ++.++.+....|.+|||||||||++|||++++.+
T Consensus 2 ~v~iy-------t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~--~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 2 NVTIY-------TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP--EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred CEEEE-------ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH--HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHH
Confidence 58999 678899998 8999999999999999987763 3333333333467899999999999999999999
Q ss_pred HHHcCch
Q 045109 332 MHEEGQL 338 (423)
Q Consensus 332 LhEsGeL 338 (423)
++..|.|
T Consensus 73 ~~~~~~l 79 (80)
T COG0695 73 LEAKGKL 79 (80)
T ss_pred HHhhccC
Confidence 9998876
No 20
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.50 E-value=3.9e-14 Score=120.73 Aligned_cols=91 Identities=26% Similarity=0.452 Sum_probs=72.0
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHc-----CCCCCCCCCceEeCCEEEcchH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCHVRVILKGLGVRVDERDLSMHSGFKNELKELLG-----DGFSGGGLPRVFVGKKYIGGAE 327 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg-----~~tg~~TVPQVFVdGe~IGGaD 327 (423)
.|.||+||+.|.++..-.+..+..||+.++|.|+++||+++.+.|+.|++..+ ...+.+-+||||++++|+|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 37899999999888777778899999999999999999999999999999884 1123345589999999999999
Q ss_pred HHHHHHHcCchHHHHc
Q 045109 328 EIRRMHEEGQLEKVVE 343 (423)
Q Consensus 328 EV~~LhEsGeL~kLL~ 343 (423)
++.+++|+|+|...|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999986
No 21
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.48 E-value=1.9e-13 Score=106.53 Aligned_cols=69 Identities=19% Similarity=0.410 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
+|+|| ++++|++|. ||++|+.++|.|+++|++.+. ..++++.+. +..++|+|||||++|||+++|.+
T Consensus 2 ~v~ly-------s~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~-~~~~~~~~~----g~~~vP~ifi~g~~igg~~~l~~ 69 (72)
T cd03029 2 SVSLF-------TKPGCPFCARAKAALQENGISYEEIPLGKDI-TGRSLRAVT----GAMTVPQVFIDGELIGGSDDLEK 69 (72)
T ss_pred eEEEE-------ECCCCHHHHHHHHHHHHcCCCcEEEECCCCh-hHHHHHHHh----CCCCcCeEEECCEEEeCHHHHHH
Confidence 68999 678999988 899999999999999998665 344555443 46799999999999999999988
Q ss_pred HH
Q 045109 332 MH 333 (423)
Q Consensus 332 Lh 333 (423)
+.
T Consensus 70 ~l 71 (72)
T cd03029 70 YF 71 (72)
T ss_pred Hh
Confidence 64
No 22
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.45 E-value=4.6e-13 Score=109.18 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=61.3
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCC-----CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchH
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLG-----VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAE 327 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~g-----V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaD 327 (423)
|+|| ++++||+|. |+++|+.++ +.|+++|+..+...+++|.++.+. +..+||||||||++|||++
T Consensus 2 V~vy-------s~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~--~~~tVP~ifi~g~~igG~~ 72 (86)
T TIGR02183 2 VVIF-------GRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGK--PVETVPQIFVDEKHVGGCT 72 (86)
T ss_pred EEEE-------eCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCC--CCCCcCeEEECCEEecCHH
Confidence 7899 678999998 999999984 679999997655556778777653 2369999999999999999
Q ss_pred HHHHHHHcC
Q 045109 328 EIRRMHEEG 336 (423)
Q Consensus 328 EV~~LhEsG 336 (423)
+|.+|++++
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 999998764
No 23
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.45 E-value=5.6e-13 Score=107.41 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=63.6
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHh-----CCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcch
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKG-----LGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGA 326 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~-----~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGa 326 (423)
+|+|| .+++|++|. |+++|+. .+|.|+++|+..+...+++|+++.+. +..++|||||||++|||+
T Consensus 2 ~v~iy-------~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~--~~~~vP~ifi~g~~igg~ 72 (85)
T PRK11200 2 FVVIF-------GRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK--PVETVPQIFVDQKHIGGC 72 (85)
T ss_pred EEEEE-------eCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC--CCCcCCEEEECCEEEcCH
Confidence 58999 678999988 9999999 79999999998776667888887753 346999999999999999
Q ss_pred HHHHHHHHc
Q 045109 327 EEIRRMHEE 335 (423)
Q Consensus 327 DEV~~LhEs 335 (423)
++|.++++.
T Consensus 73 ~~~~~~~~~ 81 (85)
T PRK11200 73 TDFEAYVKE 81 (85)
T ss_pred HHHHHHHHH
Confidence 999998753
No 24
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.45 E-value=5.3e-13 Score=106.71 Aligned_cols=73 Identities=27% Similarity=0.461 Sum_probs=60.9
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcch
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGA 326 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGa 326 (423)
.-.+++|+|| .+++|++|. +|++|+.+||.|+++|++.+.. .+++.++ ++..++|+|||||++|||+
T Consensus 4 ~~~~~~V~ly-------~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~-~~~~~~~----~g~~~vP~i~i~g~~igG~ 71 (79)
T TIGR02190 4 ARKPESVVVF-------TKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR-GRSLRAV----TGATTVPQVFIGGKLIGGS 71 (79)
T ss_pred cCCCCCEEEE-------ECCCCHhHHHHHHHHHHcCCCcEEEECCCChH-HHHHHHH----HCCCCcCeEEECCEEEcCH
Confidence 3468899999 788999998 8999999999999999975533 3455543 3567999999999999999
Q ss_pred HHHHHH
Q 045109 327 EEIRRM 332 (423)
Q Consensus 327 DEV~~L 332 (423)
++|.++
T Consensus 72 ~~l~~~ 77 (79)
T TIGR02190 72 DELEAY 77 (79)
T ss_pred HHHHHH
Confidence 999875
No 25
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.45 E-value=6.2e-13 Score=99.41 Aligned_cols=71 Identities=32% Similarity=0.692 Sum_probs=62.6
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
+|+|| .+++|+.|. ++.+|+.+++.|.++|+..+.+.+++|+++.+ ..++|+||+||++|||++++++
T Consensus 1 ~v~ly-------~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~----~~~~P~~~~~~~~igg~~~~~~ 69 (72)
T cd02066 1 KVVVF-------SKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG----WPTVPQIFINGEFIGGYDDLKA 69 (72)
T ss_pred CEEEE-------ECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC----CCCcCEEEECCEEEecHHHHHH
Confidence 58999 567799888 89999999999999999988877788887765 4699999999999999999999
Q ss_pred HHH
Q 045109 332 MHE 334 (423)
Q Consensus 332 LhE 334 (423)
|++
T Consensus 70 ~~~ 72 (72)
T cd02066 70 LHE 72 (72)
T ss_pred hhC
Confidence 874
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.36 E-value=2.7e-12 Score=131.91 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=74.2
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHc-----CCCCCCCCCceEeCCEEEcc
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLG-----DGFSGGGLPRVFVGKKYIGG 325 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg-----~~tg~~TVPQVFVdGe~IGG 325 (423)
.+|+|| ++++||+|. +|++|+.+||.|+++||+.+.. ..++.+.++ ..+|..|||||||||++|||
T Consensus 2 ~~V~vy-------s~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~-~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igG 73 (410)
T PRK12759 2 VEVRIY-------TKTNCPFCDLAKSWFGANDIPFTQISLDDDVK-RAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGG 73 (410)
T ss_pred CcEEEE-------eCCCCHHHHHHHHHHHHCCCCeEEEECCCChh-HHHHHHHHhhccccccCCCCccCeEEECCEEEeC
Confidence 369999 678999998 8999999999999999986553 334444332 34678899999999999999
Q ss_pred hHHHHHHHHcCchHHHHcccccccC
Q 045109 326 AEEIRRMHEEGQLEKVVEGCEMIDD 350 (423)
Q Consensus 326 aDEV~~LhEsGeL~kLL~~~~~~~~ 350 (423)
++++++ .+|+|.++|++.+..+.
T Consensus 74 f~~l~~--~~g~l~~~~~~~~~~~~ 96 (410)
T PRK12759 74 YDNLMA--RAGEVIARVKGSSLTTF 96 (410)
T ss_pred chHHHH--HhCCHHHHhcCCccccc
Confidence 999988 99999999999876643
No 27
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.28 E-value=1.4e-11 Score=93.07 Aligned_cols=59 Identities=34% Similarity=0.555 Sum_probs=53.4
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEE
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYI 323 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~I 323 (423)
|+|| .+..|+.|. ++++|+.+||+|+++||+.+.+.+++|+++.+ ..++|+|||||++|
T Consensus 1 V~vy-------~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g----~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVY-------TKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG----VRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEE-------ESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS----SSSSSEEEETTEEE
T ss_pred cEEE-------EcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC----CCccCEEEECCEEC
Confidence 7899 568899888 89999999999999999998888999999874 56999999999997
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.95 E-value=1.7e-09 Score=84.76 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=53.1
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCE-EEcchHH
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK-YIGGAEE 328 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe-~IGGaDE 328 (423)
|+|| .+..|++|. ++++|+.++|.|+++||..+...++++++ +| ..+||+|||+|. +|||++.
T Consensus 1 v~ly-------~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g----~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVY-------SKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QG----FRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEE-------eCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cC----CcccCEEEECCCcEEeccCH
Confidence 5789 678899988 89999999999999999988877777764 23 468999999775 9999875
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.89 E-value=5.3e-09 Score=85.17 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=55.3
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEE 328 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDE 328 (423)
+|+|| .+++|++|. +|.+|+.+||.|+++||+.+++..++++. . |..+||+|+|++..|+|++.
T Consensus 2 ~v~lY-------t~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~----g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIY-------TRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q----GFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEE-------eCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c----CCCCcCEEEECCEEEecCCH
Confidence 68999 678999998 89999999999999999988777766654 2 35699999999999999875
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.61 E-value=3e-07 Score=69.09 Aligned_cols=65 Identities=28% Similarity=0.521 Sum_probs=54.7
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEE 328 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDE 328 (423)
+|+|| ...+|+.|. ++.+|+..++.|.++|++.+....+++.++.+ ..++|.++++|+.++|++.
T Consensus 1 ~i~lf-------~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~----~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVY-------TTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG----QRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEE-------cCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC----CCcccEEEECCEEEeeCCH
Confidence 47899 678899888 89999999999999999877766777777765 4589999999999988754
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.53 E-value=4.6e-07 Score=68.13 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=54.2
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEE 328 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDE 328 (423)
+|++| ...+|++|. ++.+|+..++.|..+|++.+....++++++. +..++|.|+++|+.|+|.+.
T Consensus 1 ~v~l~-------~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~----~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVY-------TKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLN----GYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEE-------eCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHc----CCcccCEEEECCEEEecCCH
Confidence 47889 567898886 8999999999999999987776677777654 24589999999999999875
No 32
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=3.6e-06 Score=72.67 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=80.5
Q ss_pred cEEEEEeCCCCCCCCCCcHHHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHc----CCCCCCCCCceEeCCEEEcchHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCHVRVILKGLGVRVDERDLSMHSGFKNELKELLG----DGFSGGGLPRVFVGKKYIGGAEE 328 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg----~~tg~~TVPQVFVdGe~IGGaDE 328 (423)
.|.||++|..|.+.+.-....+..+|+...|.++++|+.+....+..+...+. ...|....||||-+.+|.|++|.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 47899999999887766666799999999999999999887777777766653 23566789999999999999999
Q ss_pred HHHHHHcCchHHHHccccc
Q 045109 329 IRRMHEEGQLEKVVEGCEM 347 (423)
Q Consensus 329 V~~LhEsGeL~kLL~~~~~ 347 (423)
+.+..|++.|.+.|.-++.
T Consensus 83 F~ea~E~ntl~eFL~lap~ 101 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAPP 101 (108)
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 9999999999999987664
No 33
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.03 E-value=3.6e-05 Score=59.15 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=49.6
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe-CCEEEcchH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV-GKKYIGGAE 327 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV-dGe~IGGaD 327 (423)
+|+|| ..++|+.|. ++.+|+.+++.|+.+|++.+....++++++-. +..++|+|++ +|+.+....
T Consensus 1 ~v~ly-------~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~---~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVY-------GTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNN---GNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEE-------ECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhC---CCceeCEEEECCCeEecCCC
Confidence 47899 567899887 89999999999999999866665566655521 3468999977 667776554
No 34
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.93 E-value=2.3e-05 Score=59.71 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=43.7
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcc
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGG 325 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGG 325 (423)
+|+|| .+++|+.|. ++.+|+.+ +|.|..+|++.+. ++.+.++ ..++|+|+|+|++++-
T Consensus 2 ~v~~f-------~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~----~l~~~~~----i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVF-------VSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFP----DLADEYG----VMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEE-------ECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCH----hHHHHcC----CcccCEEEECCEEEEe
Confidence 57898 567899887 78888865 6889999986442 4555544 4589999999998863
No 35
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=97.58 E-value=0.00055 Score=53.44 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=51.7
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeC----CEEEcchH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVG----KKYIGGAE 327 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVd----Ge~IGGaD 327 (423)
+|.|| ....|++|. |+.+|+.+||.|++++++. ..+.+++ + .+..+||.++++ |..|....
T Consensus 1 ~i~Ly-------~~~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~--~---~~~~~vP~l~~~~~~~~~~l~eS~ 66 (77)
T cd03040 1 KITLY-------QYKTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK--W---SSYKKVPILRVESGGDGQQLVDSS 66 (77)
T ss_pred CEEEE-------EcCCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH--H---hCCCccCEEEECCCCCccEEEcHH
Confidence 57889 556799988 8999999999999999853 3445552 2 235689999987 78888888
Q ss_pred HHHHHH
Q 045109 328 EIRRMH 333 (423)
Q Consensus 328 EV~~Lh 333 (423)
.+.+..
T Consensus 67 ~I~~yL 72 (77)
T cd03040 67 VIISTL 72 (77)
T ss_pred HHHHHH
Confidence 887643
No 36
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=97.46 E-value=0.00056 Score=49.70 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=48.5
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
....|++|. ++.+|+.++|.|+.++++.......++.+ .++..++|.|+++|..+++...+.+.
T Consensus 5 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 5 YFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLA----LNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred eCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHh----cCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 456688776 89999999999999998755433333333 34567999999999999999887653
No 37
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.38 E-value=0.0015 Score=51.59 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=51.8
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--CCEEEcchHHHH
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV--GKKYIGGAEEIR 330 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV--dGe~IGGaDEV~ 330 (423)
++|| ....|++|. |+.+|+.+||.|++++++.+.....++.++- +..+||.+-. +|..|.+...+.
T Consensus 2 ~~Ly-------~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~----p~~~vP~l~~~~~~~~l~es~~I~ 70 (77)
T cd03041 2 LELY-------EFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKG----GKVQVPYLVDPNTGVQMFESADIV 70 (77)
T ss_pred ceEe-------cCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhC----CCCcccEEEeCCCCeEEEcHHHHH
Confidence 5788 556798776 8999999999999999975444456665432 3468999876 367888888887
Q ss_pred HHH
Q 045109 331 RMH 333 (423)
Q Consensus 331 ~Lh 333 (423)
+..
T Consensus 71 ~yL 73 (77)
T cd03041 71 KYL 73 (77)
T ss_pred HHH
Confidence 744
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.27 E-value=0.0013 Score=50.66 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=47.3
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeC-CEEEcchHHHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVG-KKYIGGAEEIRRMH 333 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVd-Ge~IGGaDEV~~Lh 333 (423)
....|++|. ||.+|..+||.|+.+.++.... ....+. .+..++|.|+++ |..+++...+.+..
T Consensus 5 ~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~--~~~~~~----~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 5 IYEHCPFCVKARMIAGLKNIPVEQIILQNDDE--ATPIRM----IGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ecCCCcHhHHHHHHHHHcCCCeEEEECCCCch--HHHHHh----cCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 345799887 8999999999999998874321 122222 234689999997 99999999987744
No 39
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.96 E-value=0.0013 Score=55.22 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|+|| .++.|+.|+ ++++|+.+||.|+++|+..++...++|.++++.
T Consensus 1 i~iY-------~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIY-------GNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEE-------ECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 5789 678899888 899999999999999998778888899998864
No 40
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.93 E-value=0.0014 Score=56.20 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=40.4
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|.|| ..+.|+.|+ ++++|+.+||.|+++|+..++..++||.+.++.
T Consensus 1 i~iY-------~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFY-------EYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEE-------ECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 5789 667899888 899999999999999998888888999888763
No 41
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=96.86 E-value=0.0056 Score=49.90 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeC-CEEEcchH
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVG-KKYIGGAE 327 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVd-Ge~IGGaD 327 (423)
..+.+.|| ....|++|. ++.+|+.+|+.|+.+++++.. ..+++.+. ....++|.+.++ |..|....
T Consensus 15 ~~~~~~Ly-------~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~----np~~~vPvL~~~~g~~l~eS~ 82 (89)
T cd03055 15 VPGIIRLY-------SMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEK----NPQGKVPALEIDEGKVVYESL 82 (89)
T ss_pred CCCcEEEE-------eCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhh----CCCCCcCEEEECCCCEEECHH
Confidence 36779999 456799887 899999999999999987542 22344443 234689999998 88888887
Q ss_pred HHHHH
Q 045109 328 EIRRM 332 (423)
Q Consensus 328 EV~~L 332 (423)
.+.+.
T Consensus 83 aI~~y 87 (89)
T cd03055 83 IICEY 87 (89)
T ss_pred HHHHh
Confidence 77654
No 42
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=96.77 E-value=0.0077 Score=46.04 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=47.3
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
....|++|. ++.+|+..|+.|++++++.. ....++.+.. ...++|.+..+|..|.....+.+..
T Consensus 5 ~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~----p~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 5 SGPDDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELN----PYGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred ECCCChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhC----CCCCCCEEEECCEEEEcHHHHHHHH
Confidence 456798777 89999999999999988754 2234555532 2458999988888888877776643
No 43
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.63 E-value=0.004 Score=55.19 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=40.9
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|+|| ....|+.|+ |+++|+.+||.|+++|+..++..++||.+.+..
T Consensus 2 i~iY-------~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLF-------TSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEE-------eCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHH
Confidence 7899 677899887 899999999999999998888889999888763
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=96.43 E-value=0.015 Score=44.92 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=46.4
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeC-CEEEcchHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVG-KKYIGGAEEIRR 331 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVd-Ge~IGGaDEV~~ 331 (423)
...+|++|. ++.+|+.+|+.|+.+++++.. ...++.+. ....+||.+..+ |..|.....+.+
T Consensus 5 ~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~----np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 5 SFRRCPYAMRARMALLLAGITVELREVELKN-KPAEMLAA----SPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred ecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHH----CCCCCCCEEEECCCcEEecHHHHHH
Confidence 456899987 899999999999999987642 23455443 234699999996 888877766654
No 45
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=96.20 E-value=0.017 Score=43.69 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCCh--hhHHHHHHHHcCCCCCCCCCceEe-CCEEEcchHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHS--GFKNELKELLGDGFSGGGLPRVFV-GKKYIGGAEEIRR 331 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~--~~reEL~~lLg~~tg~~TVPQVFV-dGe~IGGaDEV~~ 331 (423)
...+|++|. ++.+|+.+++.|+.+.++... ....++.+. ....++|.+.+ +|..+.....+.+
T Consensus 5 ~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~----~p~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 5 DSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAK----NPAGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred eCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhh----CCCCCCCEEEeCCCCEEecHHHHHH
Confidence 456788776 899999999999998886532 223444443 23468999998 6667776666654
No 46
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.19 E-value=0.01 Score=51.14 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=39.9
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|.|| ....|+.|+ |+++|+.+||.|+++|+..++..+++|.+++..
T Consensus 1 i~iY-------~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~ 47 (117)
T TIGR01617 1 IKVY-------GSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSL 47 (117)
T ss_pred CEEE-------eCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHH
Confidence 4688 567899887 899999999999999998888888999888763
No 47
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.13 E-value=0.014 Score=50.19 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=39.6
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHc
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLG 305 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg 305 (423)
|.|| ....|+.|+ |+++|+.+||.|+.+|+..++..++||.+.+.
T Consensus 2 i~iY-------~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLY-------TSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEE-------eCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 6789 567899887 99999999999999999888888889988876
No 48
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=96.08 E-value=0.057 Score=41.70 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=45.9
Q ss_pred CCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHHH
Q 045109 266 KTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHE 334 (423)
Q Consensus 266 KT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~LhE 334 (423)
-++|++|. ++.+|+.+||.|+.++++... ......+|.+.++|+.|.+...+.+..+
T Consensus 13 ~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 13 PSLSPECLKVETYLRMAGIPYEVVFSSNPW------------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEecCCcc------------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 36799887 899999999999999987431 2234589999999999999988877543
No 49
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.06 E-value=0.013 Score=52.17 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=40.8
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|+|| ..+.|+.|+ ++++|+.+||.|+++|+..++...+||.+.+..
T Consensus 2 i~iY-------~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLY-------TTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEE-------eCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 7899 567899887 899999999999999998888889999998863
No 50
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.05 E-value=0.015 Score=51.87 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|.|| ..+.|+.|+ ++++|+.+||.|+++|+..++.-++||.+.+..
T Consensus 2 i~iY-------~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~ 48 (132)
T PRK13344 2 IKIY-------TISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTK 48 (132)
T ss_pred EEEE-------eCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHH
Confidence 6799 567899887 899999999999999998888888999888753
No 51
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.89 E-value=0.046 Score=44.18 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=39.3
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhC----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCC
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGL----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGK 320 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdG 320 (423)
+|++| ++..|.-|. ++.+|+.. .+.++++||+.+. +|.++.+ ..+|.|+++|
T Consensus 1 ~l~l~-------~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~----~l~~~Y~-----~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLY-------TKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP----ELFEKYG-----YRIPVLHIDG 57 (81)
T ss_dssp -EEEE-------E-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH----HHHHHSC-----TSTSEEEETT
T ss_pred CEEEE-------cCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCH----HHHHHhc-----CCCCEEEEcC
Confidence 47899 678899777 89999865 4678999998443 4666665 3799999999
No 52
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.79 E-value=0.043 Score=42.58 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHH----hCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCE
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILK----GLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK 321 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe 321 (423)
.|+|| ..++|+.|. ++.+|+ .++ +.+..+|+..+. ++.+.+ +-.++|.++|+|+
T Consensus 2 ~v~~f-------~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~----~~~~~~----~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELF-------TSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP----QKAMEY----GIMAVPAIVINGD 62 (82)
T ss_pred EEEEE-------ECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH----HHHHHc----CCccCCEEEECCE
Confidence 47788 568999887 666664 345 556677765332 333333 3457999999996
No 53
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=95.76 E-value=0.031 Score=43.84 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=50.5
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
...+|++|. |+-+|+.+||.|+..++..... ..++.++- ...+||.+..+|..|.+...+.+..
T Consensus 3 ~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~----p~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 3 GFPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLN----PKGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHS----TTSBSSEEEETTEEEESHHHHHHHH
T ss_pred CcCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhc----ccccceEEEECCEEEeCHHHHHHHH
Confidence 346799887 8999999999999999875432 45555543 3569999999999999999887743
No 54
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.67 E-value=0.021 Score=48.84 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=40.0
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|+|| ..+.|+-|+ ++++|+.+||.|+++|+..++--.+||.+++..
T Consensus 1 i~iy-------~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 1 ITLY-------GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CEEE-------eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 5788 567898776 999999999999999998888889999998863
No 55
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.65 E-value=0.037 Score=41.99 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=45.4
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
....|++|. ++.+|+..|+.|+++++++... ...++.+. ....++|.+..+|..|.....+.+
T Consensus 5 ~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~----~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 5 GFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLAL----NPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred eCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHh----CCCCCCCEEEECCEEEEcHHHHHH
Confidence 345687665 8999999999999999875321 23444442 234589999999998887777654
No 56
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=95.56 E-value=0.046 Score=41.94 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=45.7
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
....|++|. ++.+|+.+|+.|+.+.+++... ...++.+. ....++|.+.++|..|-....+.+.
T Consensus 5 ~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~----~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 5 YLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKL----NPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred eCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhh----CcCCCCCEEEECCEEEEcHHHHHHH
Confidence 456688765 8999999999999998875322 23455543 2345899999998887777766553
No 57
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.49 E-value=0.055 Score=43.06 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=34.8
Q ss_pred CCcHHH-----HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCE--EEcchHH
Q 045109 268 YEDCCH-----VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK--YIGGAEE 328 (423)
Q Consensus 268 ~c~Cc~-----VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe--~IGGaDE 328 (423)
.|++|. ++.++..+++.++.+|+. + .+++ ..+ |-.++|.++|||+ +.|..-.
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~y----gv~~vPalvIng~~~~~G~~p~ 67 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKY----GVMSVPALVINGKVVFVGRVPS 67 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHT----T-SSSSEEEETTEEEEESS--H
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHc----CCCCCCEEEECCEEEEEecCCC
Confidence 398886 466778889999999873 2 3455 333 3468999999997 4563433
No 58
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.35 E-value=0.11 Score=44.49 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=41.1
Q ss_pred HHhhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCC-----CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE
Q 045109 244 VLDHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLG-----VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF 317 (423)
Q Consensus 244 ~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~g-----V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF 317 (423)
+.+.+.....||||+ ..++|+.|. ++.+|+... |.+..+|++.. .++.+.++ -.++|.++
T Consensus 15 ~~~~l~~~~~vvv~f------~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~----~~l~~~~~----v~~vPt~~ 80 (113)
T cd02975 15 FFKEMKNPVDLVVFS------SKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED----KEKAEKYG----VERVPTTI 80 (113)
T ss_pred HHHHhCCCeEEEEEe------CCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC----HHHHHHcC----CCcCCEEE
Confidence 344455566688885 468998777 777776443 67888888643 35555544 46899999
Q ss_pred e
Q 045109 318 V 318 (423)
Q Consensus 318 V 318 (423)
|
T Consensus 81 i 81 (113)
T cd02975 81 F 81 (113)
T ss_pred E
Confidence 8
No 59
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.34 E-value=0.015 Score=51.12 Aligned_cols=53 Identities=25% Similarity=0.609 Sum_probs=40.5
Q ss_pred CccccccCccceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcccCCCCC
Q 045109 356 VGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTRCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLirCp~C~ 422 (423)
...|..|.|.+...|..|+|+-.+...- + .......+|+.|+-.|.+.|+.|-
T Consensus 41 ~v~C~~C~GsG~~~C~~C~G~G~v~~~~---------~-----g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 41 TQPCFPCSGTGAQVCRFCVGSGNVTVEL---------G-----GGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred CCCCCCCCCCCCcCCCCCcCcCeEEEEe---------C-----CcEEEEEECCCCCCcceeeCCCCC
Confidence 4569999999999999999997665431 0 011235799999999999999993
No 60
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.20 E-value=0.039 Score=48.00 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=39.8
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|+|| ..+.|+-|+ ++++|+.+||.|+++|+..++--.+||.+.+..
T Consensus 2 i~iy-------~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~ 48 (113)
T cd03033 2 IIFY-------EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGD 48 (113)
T ss_pred EEEE-------ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHH
Confidence 7899 556798776 999999999999999998888888999998863
No 61
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.05 E-value=0.22 Score=43.52 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=43.4
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhCCCcEEEEECCCCh----h---hHHHHHHHHcCCCCCCCCCceE
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGLGVRVDERDLSMHS----G---FKNELKELLGDGFSGGGLPRVF 317 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~gV~yeErDVsmd~----~---~reEL~~lLg~~tg~~TVPQVF 317 (423)
....++||+ .+++||.|+ ++.+.+..++.+..+|++.+. . ...++++.++..++-..+|.++
T Consensus 22 ~~~~~iv~f------~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v 95 (122)
T TIGR01295 22 KKETATFFI------GRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFV 95 (122)
T ss_pred cCCcEEEEE------ECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEE
Confidence 345567775 578999987 367777778889999997543 1 1234444444323334578765
Q ss_pred --eCCEEEcc
Q 045109 318 --VGKKYIGG 325 (423)
Q Consensus 318 --VdGe~IGG 325 (423)
-+|+.++.
T Consensus 96 ~~k~Gk~v~~ 105 (122)
T TIGR01295 96 HITDGKQVSV 105 (122)
T ss_pred EEeCCeEEEE
Confidence 58865543
No 62
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.83 E-value=0.14 Score=40.88 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=35.2
Q ss_pred CCCcHHH-H----HHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEE
Q 045109 267 TYEDCCH-V----RVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYI 323 (423)
Q Consensus 267 T~c~Cc~-V----K~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~I 323 (423)
++|+.|. + +++++.+++.++..+|+ + .+++.+ .+-.++|.|+|||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~---~~~a~~-----~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVT-D---MNEILE-----AGVTATPGVAVDGELV 60 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C---HHHHHH-----cCCCcCCEEEECCEEE
Confidence 7898776 4 77888999999998886 2 223322 2346899999999655
No 63
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.80 E-value=0.083 Score=43.82 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=41.0
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh----C-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCE
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKG----L-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK 321 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~----~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe 321 (423)
+-+.=.|.+|++ ++|++|. ++.+++. + +|.|..+|++.. .++.+.++ -..+|.++|||+
T Consensus 10 l~~pv~i~~F~~-------~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~----~e~a~~~~----V~~vPt~vidG~ 74 (89)
T cd03026 10 LNGPINFETYVS-------LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF----QDEVEERG----IMSVPAIFLNGE 74 (89)
T ss_pred cCCCEEEEEEEC-------CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC----HHHHHHcC----CccCCEEEECCE
Confidence 334446788843 6788776 5555543 3 689999998633 23444443 347999999998
Q ss_pred EEc
Q 045109 322 YIG 324 (423)
Q Consensus 322 ~IG 324 (423)
.++
T Consensus 75 ~~~ 77 (89)
T cd03026 75 LFG 77 (89)
T ss_pred EEE
Confidence 765
No 64
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=94.69 E-value=0.37 Score=37.72 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
+++++|. |+.+|+..|+.|+.+.+++. ......++|.+-.+|+.|.....+.+..
T Consensus 15 ~~sp~~~~v~~~L~~~gi~~~~~~~~~~------------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 15 SLSPFCLKVETFLRMAGIPYENKFGGLA------------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEeecCcc------------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 4678887 89999999999998888631 2334568999999999999998887743
No 65
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=94.53 E-value=0.18 Score=38.95 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=49.7
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHH
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIR 330 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~ 330 (423)
+.+| ....|++|. ++-+|...|+.|+.+.+++... ..+++.+. ....++|.+..+|..|.....+.
T Consensus 2 ~~Ly-------~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~----~P~~~vP~l~~~g~~l~es~aI~ 70 (76)
T cd03053 2 LKLY-------GAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLAR----NPFGQIPALEDGDLKLFESRAIT 70 (76)
T ss_pred eEEE-------eCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhh----CCCCCCCEEEECCEEEEcHHHHH
Confidence 4677 556788876 8999999999999988875321 12344432 23458999999998888888777
Q ss_pred HHH
Q 045109 331 RMH 333 (423)
Q Consensus 331 ~Lh 333 (423)
+..
T Consensus 71 ~yL 73 (76)
T cd03053 71 RYL 73 (76)
T ss_pred HHH
Confidence 654
No 66
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=94.40 E-value=0.11 Score=39.42 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
..++|+. ++.+|+.+||.|+.+.+++... ...++.+. ....++|.+..+|..|.....+.+.
T Consensus 7 ~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~----~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 7 FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRAL----NPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHh----CCCCCCCEEEECCEEEEcHHHHHHH
Confidence 4567765 8999999999999988876322 23455543 2346899999999888777766553
No 67
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=94.08 E-value=0.35 Score=37.77 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=44.0
Q ss_pred CCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 268 YEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 268 ~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
.++++. ++-+|...|+.|+.+.++.+ ....++. ......+||.+..+|..|.....+.+..
T Consensus 9 ~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~----~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 9 VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLK----PKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred CcchHHHHHHHHHHcCCCCEEEEecHH-Hhhhhhh----ccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 467775 89999999999999988642 2222222 2333468999999999888888776643
No 68
>PHA02125 thioredoxin-like protein
Probab=93.88 E-value=0.21 Score=39.49 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEE
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKY 322 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~ 322 (423)
|++| ..++|+.|+ ++.+|+... +...+|+.+. ..++.+.++ -..+|.+. +|+.
T Consensus 2 iv~f-------~a~wC~~Ck~~~~~l~~~~--~~~~~vd~~~--~~~l~~~~~----v~~~PT~~-~g~~ 55 (75)
T PHA02125 2 IYLF-------GAEWCANCKMVKPMLANVE--YTYVDVDTDE--GVELTAKHH----IRSLPTLV-NTST 55 (75)
T ss_pred EEEE-------ECCCCHhHHHHHHHHHHHh--heEEeeeCCC--CHHHHHHcC----CceeCeEE-CCEE
Confidence 6777 568999887 788998654 4445554332 236666554 35799876 6653
No 69
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=93.20 E-value=0.19 Score=44.26 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=39.3
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
.|.|| .-+.|.-|+ |+++|+.+||.|.++|+..++--+++|.+.+..
T Consensus 2 ~itiy-------~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~ 49 (117)
T COG1393 2 MITIY-------GNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSK 49 (117)
T ss_pred eEEEE-------eCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHH
Confidence 37899 445688666 999999999999999998788888999888753
No 70
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=92.91 E-value=0.68 Score=39.21 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=48.1
Q ss_pred CCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHHH
Q 045109 266 KTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHE 334 (423)
Q Consensus 266 KT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~LhE 334 (423)
+..|++|. ++-+|..+||.|+..++++... -+.+.++ . ....||.+..+|..|.....+.+..+
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~-n---P~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDL-A---PGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHh-C---CCCCCCEEEECCEEecCHHHHHHHHH
Confidence 46799887 9999999999999999876532 1333332 2 23589999999999999888877543
No 71
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=92.89 E-value=0.62 Score=36.00 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=44.3
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.-..|++|. ++-+|+..|+.|+.++++.. ....++.+. .. ...++|.+-.+|.-|.....+.+.
T Consensus 5 ~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~-~p--~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 5 GAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLAS-NP--VHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred ECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHh-CC--CCCCCCEEEECCEEeehHHHHHHH
Confidence 345688776 89999999999999988653 112333332 21 125899998888888877777664
No 72
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.70 E-value=0.7 Score=42.74 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=58.1
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHHH-HHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcc---
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCHV-RVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGG--- 325 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~V-K~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGG--- 325 (423)
..-++++| ..+.|.||.. -+.|+..|..+...+.+ ....|+++++-.....+-=...|||.||-|
T Consensus 24 ~~~~~~vy-------ksPnCGCC~~w~~~mk~~Gf~Vk~~~~~----d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVP 92 (149)
T COG3019 24 QATEMVVY-------KSPNCGCCDEWAQHMKANGFEVKVVETD----DFLALKRRLGIPYEMQSCHTAVINGYYVEGHVP 92 (149)
T ss_pred ceeeEEEE-------eCCCCccHHHHHHHHHhCCcEEEEeecC----cHHHHHHhcCCChhhccccEEEEcCEEEeccCC
Confidence 35678889 7789999995 78889999887777653 356788888755444566788999999988
Q ss_pred hHHHHHHHHcCc
Q 045109 326 AEEIRRMHEEGQ 337 (423)
Q Consensus 326 aDEV~~LhEsGe 337 (423)
++.|.+|.+++.
T Consensus 93 a~aI~~ll~~~p 104 (149)
T COG3019 93 AEAIARLLAEKP 104 (149)
T ss_pred HHHHHHHHhCCC
Confidence 466766666555
No 73
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=92.68 E-value=0.24 Score=44.07 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=38.7
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
.|+|| ....|+-|+ ++++|+.+||.|+++|+-.++--.+||+..+..
T Consensus 2 ~i~iY-------~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 2 TIIFY-------EKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred eEEEE-------eCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 36788 456688666 999999999999999998777778888888763
No 74
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=92.28 E-value=0.54 Score=37.41 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=45.4
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeC-CEEEcchHHHHHHH
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVG-KKYIGGAEEIRRMH 333 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVd-Ge~IGGaDEV~~Lh 333 (423)
.++++|. ++-+|..+||.|+.+.+++... +.....+ .......+|.+..+ |+.|.+...+.+..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~--~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI--PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc--ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence 5677776 8999999999999988864321 1222222 23345689999888 89998888887753
No 75
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=92.26 E-value=0.69 Score=36.49 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=44.1
Q ss_pred CCCCcHH-HHHHHHHhCCCcEEEEECCCChh-h-HHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 266 KTYEDCC-HVRVILKGLGVRVDERDLSMHSG-F-KNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 266 KT~c~Cc-~VK~LL~~~gV~yeErDVsmd~~-~-reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
-..|+++ +|+-+|+.+|+.|+.+.+++... . ..++.++- ...+||.+..+|..|.....+.+.
T Consensus 6 ~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~in----P~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 6 WTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLN----PTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhC----cCCCCCEEEECCEEEEcHHHHHHH
Confidence 3456555 58999999999999988865332 2 23455432 345899999999888877776553
No 76
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=92.17 E-value=0.29 Score=42.30 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=38.4
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|.|| ....|+-|+ ++++|+.+|+.|+++|+...+--.+||..++..
T Consensus 1 i~iy-------~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~ 47 (114)
T TIGR00014 1 VTIY-------HNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAK 47 (114)
T ss_pred CEEE-------ECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHH
Confidence 4688 456788666 999999999999999998777778899888863
No 77
>PRK10853 putative reductase; Provisional
Probab=92.00 E-value=0.35 Score=42.41 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=38.7
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
|.|| ....|.-|+ |+++|+.+||.|+.+|+-.++--.+||.+.+..
T Consensus 2 i~iy-------~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~ 48 (118)
T PRK10853 2 VTLY-------GIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDE 48 (118)
T ss_pred EEEE-------cCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHH
Confidence 6788 456688666 999999999999999998777778899998863
No 78
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=91.85 E-value=0.7 Score=37.85 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=35.2
Q ss_pred hcCCCc-EEEEEeCCCCCCCCCCcHHH-HHHHH-------HhC--CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce
Q 045109 248 KCGKEK-LVVYFTSLRGIRKTYEDCCH-VRVIL-------KGL--GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV 316 (423)
Q Consensus 248 li~~~k-VVIYtTSLrGIRKT~c~Cc~-VK~LL-------~~~--gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV 316 (423)
.+.+++ |+||+ ..++|+.|. +...+ +.+ ++.+..+|++.+.....++.+.++ ..++|.+
T Consensus 7 ~~~~~k~vlv~f------~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~----i~~~Pti 76 (104)
T cd02953 7 ALAQGKPVFVDF------TADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG----VFGPPTY 76 (104)
T ss_pred HHHcCCeEEEEE------EcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC----CCCCCEE
Confidence 333444 56665 358999887 33222 111 566777777654443456666664 3579977
Q ss_pred Ee
Q 045109 317 FV 318 (423)
Q Consensus 317 FV 318 (423)
+|
T Consensus 77 ~~ 78 (104)
T cd02953 77 LF 78 (104)
T ss_pred EE
Confidence 65
No 79
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=91.80 E-value=0.34 Score=41.66 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHc
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLG 305 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg 305 (423)
|.|| ....|+-|+ ++++|+.+++.|+++|+..++--.+||...+.
T Consensus 1 i~iy-------~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~ 46 (112)
T cd03034 1 ITIY-------HNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLA 46 (112)
T ss_pred CEEE-------ECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHH
Confidence 4688 455688666 99999999999999999777777888888775
No 80
>PRK10026 arsenate reductase; Provisional
Probab=91.72 E-value=0.35 Score=44.08 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=39.6
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcC
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGD 306 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~ 306 (423)
.|.|| ..+.|.-|+ ++++|+.+|+.|+++|+-.++--.+||+..+..
T Consensus 3 ~i~iY-------~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~ 50 (141)
T PRK10026 3 NITIY-------HNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIAD 50 (141)
T ss_pred EEEEE-------eCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHh
Confidence 47889 456788666 999999999999999998788788999988863
No 81
>PRK10387 glutaredoxin 2; Provisional
Probab=91.61 E-value=0.72 Score=42.02 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce-EeCCEEEcchHHHHHHHH
Q 045109 265 RKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV-FVGKKYIGGAEEIRRMHE 334 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV-FVdGe~IGGaDEV~~LhE 334 (423)
....|++|. |+-+|+.+||.|+.++++.... ... .+. .+..+||.+ .-+|..|.....|.+..+
T Consensus 5 ~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~----~p~~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 5 IYDHCPFCVKARMIFGLKNIPVELIVLANDDE-ATP-IRM----IGQKQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred eCCCCchHHHHHHHHHHcCCCeEEEEcCCCch-hhH-HHh----cCCcccceEEecCCeEecCHHHHHHHHH
Confidence 345688876 8999999999999998864322 112 122 234589999 568899999888887543
No 82
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=91.57 E-value=0.95 Score=34.76 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=42.0
Q ss_pred CCcHH-HHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 268 YEDCC-HVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 268 ~c~Cc-~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.++++ .++-+|+..||.|+.+.++.......+ +.......++|.+..+|..|.....+.+.
T Consensus 8 ~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~----~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 8 IRGRGEPIRLLLADAGVEYEDVRITYEEWPELD----LKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhh----hccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 44554 489999999999999988643211111 22234456999999999888877776553
No 83
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=91.02 E-value=1.1 Score=34.37 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCCCCcHHH-HHHHHHh--CCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe-CCEEEcchHHHHH
Q 045109 265 RKTYEDCCH-VRVILKG--LGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV-GKKYIGGAEEIRR 331 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~--~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV-dGe~IGGaDEV~~ 331 (423)
.-..|++|. ++-+|+. +|+.|+.+.+++. ....++.+.- ...++|.+.. +|..|.....+.+
T Consensus 5 ~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~----p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 5 YSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVN----PLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred cCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhC----CCCCCCEEEECCCCEEECHHHHHh
Confidence 345688766 8899988 8999999988642 2234554432 2458999875 7777777666654
No 84
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=90.29 E-value=1.4 Score=41.07 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=45.3
Q ss_pred CCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE-eCCEEEcchHHHHHHHH
Q 045109 266 KTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF-VGKKYIGGAEEIRRMHE 334 (423)
Q Consensus 266 KT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF-VdGe~IGGaDEV~~LhE 334 (423)
...||+|. |+-+|..+|+.|+.+++..... . ...+ + ....+||.+. .+|..|.+...+.+..+
T Consensus 5 ~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~-~~~~-~---np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 5 YDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-E-TPIR-M---IGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred CCCCChHHHHHHHHHHcCCCeEEEECCCCcc-h-hHHH-h---cCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 45688876 9999999999999988754321 1 2222 2 2245899997 78899999998888443
No 85
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=90.20 E-value=2.4 Score=31.98 Aligned_cols=56 Identities=23% Similarity=0.363 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HHHHHHh-----CCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--CCE
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VRVILKG-----LGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV--GKK 321 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~-----~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV--dGe 321 (423)
..++||+++ ++|+.|. +..+|+. .++.+...|++... ++...++ -..+|.+++ +|+
T Consensus 11 ~~~ll~~~~------~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~----v~~~P~~~~~~~g~ 74 (93)
T cd02947 11 KPVVVDFWA------PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENP----ELAEEYG----VRSIPTFLFFKNGK 74 (93)
T ss_pred CcEEEEEEC------CCChhHHHhhHHHHHHHHHCCCceEEEEECCCCh----hHHHhcC----cccccEEEEEECCE
Confidence 566777654 5898876 5666655 67888888886433 3333333 347899777 776
No 86
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=89.77 E-value=2 Score=33.76 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=41.5
Q ss_pred cHHH-HHHHHHhCCCcEEEEECCCCh--hhHHHHHHHHcCCCCCCCCCceEeC---CEEEcchHHHHHH
Q 045109 270 DCCH-VRVILKGLGVRVDERDLSMHS--GFKNELKELLGDGFSGGGLPRVFVG---KKYIGGAEEIRRM 332 (423)
Q Consensus 270 ~Cc~-VK~LL~~~gV~yeErDVsmd~--~~reEL~~lLg~~tg~~TVPQVFVd---Ge~IGGaDEV~~L 332 (423)
++|. ++-+|+.+|+.|+.+.+++.. ....++.+. ....+||.+..+ |..|.....+.+.
T Consensus 10 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~----~p~~~vP~l~~~~~~g~~l~eS~aI~~y 74 (81)
T cd03048 10 PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKI----NPNGRIPAIVDHNGTPLTVFESGAILLY 74 (81)
T ss_pred CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHh----CcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence 5555 899999999999988776432 223455543 234589999887 7888877777664
No 87
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=88.81 E-value=2.3 Score=33.12 Aligned_cols=63 Identities=14% Similarity=0.013 Sum_probs=43.7
Q ss_pred CCCCcHHH-HHHHHHhCCCcEEEEECCCChhh-HHHHHHHHcCCCCCCCCCceEeC-CEEEcchHHHHHH
Q 045109 266 KTYEDCCH-VRVILKGLGVRVDERDLSMHSGF-KNELKELLGDGFSGGGLPRVFVG-KKYIGGAEEIRRM 332 (423)
Q Consensus 266 KT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~-reEL~~lLg~~tg~~TVPQVFVd-Ge~IGGaDEV~~L 332 (423)
-..|+++. ++-+|+..|+.|+.++++...+. ..++.++ ....++|.+..+ |..|-....+.+.
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~----nP~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 6 YPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKK----FPLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred CCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHh----CCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 34577766 89999999999999998865322 2344443 234689999985 7777766666553
No 88
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.70 E-value=0.3 Score=51.02 Aligned_cols=54 Identities=30% Similarity=0.544 Sum_probs=39.9
Q ss_pred CccccccCcc------ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDV------RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~------rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|. .-+.|+.|+|+-.+....+. +. -...+.|+.||-.|-+ +|+.|.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-------g~------~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-------GF------FSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-------eE------EEEEEECCCCccceeECCCCCCCCC
Confidence 4569999988 77899999999776654210 10 1135899999999987 599983
No 89
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=88.66 E-value=1.1 Score=30.34 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=33.3
Q ss_pred CCCCCcHHH-HHHHHH-----hCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCC
Q 045109 265 RKTYEDCCH-VRVILK-----GLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGK 320 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~-----~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdG 320 (423)
...+|+.|. ++..|. ..++.+..++++........+ .. .+...+|.+++.+
T Consensus 5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~P~~~~~~ 61 (69)
T cd01659 5 YAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KR----YGVGGVPTLVVFG 61 (69)
T ss_pred ECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-Hh----CCCccccEEEEEe
Confidence 456788777 677777 567889999987554332221 11 2345899998876
No 90
>PHA02278 thioredoxin-like protein
Probab=88.65 E-value=2.4 Score=36.09 Aligned_cols=64 Identities=11% Similarity=0.194 Sum_probs=39.3
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh------CCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeCC
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-VRVILKG------LGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVGK 320 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~------~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVdG 320 (423)
..+.||||+. .++|.-|+ +..+|+. ..+.+..+|++.+.....++.+.++ -.++|.+ |-||
T Consensus 13 ~~~~vvV~F~------A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~----I~~iPT~i~fk~G 82 (103)
T PHA02278 13 QKKDVIVMIT------QDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD----IMSTPVLIGYKDG 82 (103)
T ss_pred CCCcEEEEEE------CCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC----CccccEEEEEECC
Confidence 5678888874 58998776 4444432 2356888888744322345666654 3466764 4588
Q ss_pred EEE
Q 045109 321 KYI 323 (423)
Q Consensus 321 e~I 323 (423)
+.+
T Consensus 83 ~~v 85 (103)
T PHA02278 83 QLV 85 (103)
T ss_pred EEE
Confidence 755
No 91
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=88.50 E-value=1.4 Score=45.12 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCCCCCCCCcH-HHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHH
Q 045109 252 EKLVVYFTSLRGIRKTYEDC-CHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIR 330 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~C-c~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~ 330 (423)
=.+||| .=..||+ |+||++|+-+|+.|..++|+ +-.|.|++=- .-+.||.|.|+|+-.-...-|.
T Consensus 89 L~l~Ly-------QyetCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~S-----sykKVPil~~~Geqm~dSsvII 154 (370)
T KOG3029|consen 89 LDLVLY-------QYETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKWS-----SYKKVPILLIRGEQMVDSSVII 154 (370)
T ss_pred ceEEEE-------eeccCchHHHHHHHHhhcCCceEEEEec--chhhhhcccc-----ccccccEEEeccceechhHHHH
Confidence 378999 3345884 56999999999999999985 5556666422 2357999999998766655555
Q ss_pred HHH------HcCchHHHHcccccc
Q 045109 331 RMH------EEGQLEKVVEGCEMI 348 (423)
Q Consensus 331 ~Lh------EsGeL~kLL~~~~~~ 348 (423)
.+. ..-.|.++++..++.
T Consensus 155 s~laTyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 155 SLLATYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHHHHHhccCCCCHHHHHHhcccc
Confidence 543 345778888877754
No 92
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=88.32 E-value=0.94 Score=35.29 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=44.7
Q ss_pred CCcHHH-HHHHHHhCCCcEEEEECCC--Chh-hHHHHHHHHcCCCCCCCCCceEe-CCEEEcchHHHHHHHH
Q 045109 268 YEDCCH-VRVILKGLGVRVDERDLSM--HSG-FKNELKELLGDGFSGGGLPRVFV-GKKYIGGAEEIRRMHE 334 (423)
Q Consensus 268 ~c~Cc~-VK~LL~~~gV~yeErDVsm--d~~-~reEL~~lLg~~tg~~TVPQVFV-dGe~IGGaDEV~~LhE 334 (423)
+|||+. ++-+|+.+|+.|+..-+.+ ... ...++.++-. ..+||.+.. +|+.|.....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p----~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP----RGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST----T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc----CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 689987 8999999999988776632 111 1245655432 458999998 8999999988877544
No 93
>PRK14287 chaperone protein DnaJ; Provisional
Probab=87.71 E-value=0.45 Score=49.11 Aligned_cols=55 Identities=22% Similarity=0.554 Sum_probs=36.1
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCcc-ceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADF-GFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~-~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+ -..|..|+|+-.+...-.. + -+-+ ....|+.|+-.|.+ +|+.|.
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-------~-----~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNT-------P-----FGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEec-------C-----CceEEEEEeCCCCCCCCccccccCCCCC
Confidence 34688888765 4679999999776544110 0 0000 14689999999966 588884
No 94
>PRK10767 chaperone protein DnaJ; Provisional
Probab=87.68 E-value=0.47 Score=48.76 Aligned_cols=52 Identities=25% Similarity=0.615 Sum_probs=35.2
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+. ..|..|+|+-++.....+ . . ....|+.|+-.|.+ +|+.|.
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~-------------~-~-~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGF-------------F-T-VQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeece-------------E-E-EEEeCCCCCCceeECCCCCCCCC
Confidence 356888888663 579999998776654100 0 1 24589999888866 688874
No 95
>PRK14300 chaperone protein DnaJ; Provisional
Probab=87.55 E-value=0.43 Score=49.25 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=36.0
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+ ...|..|+|+-+++....+ -. ....|+.|+-.|.+ +|+.|-
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~--------------~~-~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGF--------------FT-IEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEeece--------------EE-EEEeCCCCCccceEeCCCCCCCC
Confidence 34588888765 5789999999777654100 01 24589999999965 688883
No 96
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=87.39 E-value=3.3 Score=38.35 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=49.4
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
.+.|| .-..|+|+. |+-+|+..||.|+.+.|++. ....++.++- ...+||.+..+|..|--...|.+
T Consensus 10 ~~~Ly-------~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~n----P~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 10 VMTLF-------SGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLN----PYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred eeEEe-------CCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhC----CCCCCCEEEECCEEeeCHHHHHH
Confidence 47789 455688877 89999999999999998753 2234555532 23589999999988877777665
No 97
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=87.20 E-value=0.86 Score=35.94 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=24.5
Q ss_pred cceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc----CCCC
Q 045109 365 VRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR----CPIC 421 (423)
Q Consensus 365 ~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir----Cp~C 421 (423)
.....|+.|+|+-.++..... . +........|+.|+=.|.+. |+.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~-------~----~~~~~~~~~C~~C~G~G~~i~~~~C~~C 62 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQT-------P----GGVFQMQQTCPKCGGTGKIIEKDPCKTC 62 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEES-------S----STTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred CCCcCCcCCCCeeEEEEEEeC-------C----CeEEEEEEECCCCcceeeEECCCCCCCC
Confidence 445788888888766654210 0 00112357788888888774 7776
No 98
>PRK14290 chaperone protein DnaJ; Provisional
Probab=86.55 E-value=0.57 Score=48.15 Aligned_cols=51 Identities=25% Similarity=0.726 Sum_probs=33.0
Q ss_pred ccccccCccce-----EeCCCCCCcceeccccchhhhcccCCCCccccCcc---ceeeCCCCCCCCc---ccCCCC
Q 045109 357 GACEACGDVRF-----VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADF---GFQRCPDCNENGL---TRCPIC 421 (423)
Q Consensus 357 ~~C~~CGG~rf-----VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~---~~~RC~~CNENGL---irCp~C 421 (423)
..|..|.|.+. ..|..|+|+-.+...-. .+-+ ....|+.|+-.|- .+|+.|
T Consensus 150 ~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~--------------~g~~~~~~~~~C~~C~G~G~~~~~~C~~C 211 (365)
T PRK14290 150 AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG--------------QGFFRMVTVTTCRTCGGRGRIPEEKCPRC 211 (365)
T ss_pred ccCCCCccccCCCCCCccCCCCCCcCEEEEEec--------------cCeEEEEEEEeCCCCCCceeEccCCCCCC
Confidence 45888877664 57999999876554310 0111 1257999988884 468877
No 99
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=86.49 E-value=2.6 Score=33.00 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCChh-hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHSG-FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~-~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
.+++|+. ++-+|+..||.|+.+.++.... ...++.+. .....+|.+..+|.-|.....+.+
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~----nP~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEF----SPTGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhh----CCCCcCCEEEECCEEEEcHHHHHH
Confidence 4577776 8999999999999988875432 22344432 234689999999988887777655
No 100
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=86.24 E-value=4.7 Score=31.20 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=42.1
Q ss_pred CCCCcHH-HHHHHHHhCCCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 266 KTYEDCC-HVRVILKGLGVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 266 KT~c~Cc-~VK~LL~~~gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
-..++++ +++-+|+..|+.|+.+.++.... ...++.+. ....+||.+..+|..|-....+.+.
T Consensus 6 ~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~----~p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 6 DLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKI----NPFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHh----CcCCCCCEEEECCEEEEcHHHHHHH
Confidence 3445555 48999999999999888764321 12344443 2245899998888777766666553
No 101
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=86.16 E-value=2.4 Score=32.89 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHhCCCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEeC-CEEEcchHHHHHH
Q 045109 269 EDCCHVRVILKGLGVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFVG-KKYIGGAEEIRRM 332 (423)
Q Consensus 269 c~Cc~VK~LL~~~gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFVd-Ge~IGGaDEV~~L 332 (423)
+.+.+|+-+|..+|+.|+.+.++.... ...++.+.- ....+|.+-.+ |..|.....+.+.
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n----p~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 9 ACSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAIN----PKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred CchHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhC----CCCCCCEEEECCCcEEEcHHHHHHH
Confidence 334568999999999999888765331 234555432 34689988887 7777777666553
No 102
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=86.12 E-value=0.87 Score=52.08 Aligned_cols=57 Identities=30% Similarity=0.453 Sum_probs=36.1
Q ss_pred EEEcchHHHHHHHHcCchHHHHcccccccCCCCCCCccccccCccce------------EeCCCCCCcce
Q 045109 321 KYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGRGNVGACEACGDVRF------------VPCETCSGSCK 378 (423)
Q Consensus 321 e~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG~rf------------VpC~~C~GS~K 378 (423)
.|+|-+|++++|...-...+.- ++..-.=.-.-.++.|++|.|-++ |||+.|+|.+.
T Consensus 696 TYtg~Fd~IR~lFA~tpeAK~r-Gyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 696 TYTGVFDDIRELFAGTPEAKAR-GYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred chhcchHHHHHHHhcChHHHHc-CCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 5778899998887644433322 222100001123678999999775 79999999754
No 103
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.03 E-value=0.5 Score=48.85 Aligned_cols=20 Identities=40% Similarity=0.750 Sum_probs=12.4
Q ss_pred cccccCccceEeCCCCCCcc
Q 045109 358 ACEACGDVRFVPCETCSGSC 377 (423)
Q Consensus 358 ~C~~CGG~rfVpC~~C~GS~ 377 (423)
.|.+|-|.+-+.|..|||+-
T Consensus 189 ~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 189 FCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhcccCCCceeccCcCCCC
Confidence 36666666666666666654
No 104
>PRK14284 chaperone protein DnaJ; Provisional
Probab=85.86 E-value=0.71 Score=47.95 Aligned_cols=52 Identities=27% Similarity=0.719 Sum_probs=33.3
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+. ..|..|+|+-.++..- |- .. ....|+.|+-.|.+ +|+.|.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------G~-----~~-~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR---------GF-----FS-MASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEe---------ce-----EE-EEEECCCCCCCCcccCCcCCCCC
Confidence 345888877654 5689999987665431 00 01 24688888888865 577773
No 105
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.51 E-value=1.1 Score=47.64 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=40.1
Q ss_pred hhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCC
Q 045109 247 HKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGK 320 (423)
Q Consensus 247 ~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdG 320 (423)
.+-+.-.|.+|.| ..||+|. |+++++.+ +|..+.+|....+ ++.+.. +-.+||++||||
T Consensus 114 ~~~~~~~i~~f~~-------~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~----~~~~~~----~v~~VP~~~i~~ 178 (515)
T TIGR03140 114 RLNGPLHFETYVS-------LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ----DEVEAL----GIQGVPAVFLNG 178 (515)
T ss_pred hcCCCeEEEEEEe-------CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH----HHHHhc----CCcccCEEEECC
Confidence 3445567889944 5698887 66666544 5667777764332 333332 334899999999
Q ss_pred EEEcc
Q 045109 321 KYIGG 325 (423)
Q Consensus 321 e~IGG 325 (423)
+.++.
T Consensus 179 ~~~~~ 183 (515)
T TIGR03140 179 EEFHN 183 (515)
T ss_pred cEEEe
Confidence 76643
No 106
>PRK14285 chaperone protein DnaJ; Provisional
Probab=85.04 E-value=0.7 Score=47.64 Aligned_cols=52 Identities=29% Similarity=0.547 Sum_probs=32.5
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+ -..|..|+|+-.++... |- . -....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------G~----~--~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGG---------GF----F--RVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEecC---------ce----e--EEeeecCCCCCcccccCCCCCCCC
Confidence 34588887766 35688888887665431 10 0 124678888888854 577773
No 107
>PRK14296 chaperone protein DnaJ; Provisional
Probab=84.80 E-value=0.68 Score=47.89 Aligned_cols=56 Identities=23% Similarity=0.489 Sum_probs=33.4
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+. ..|..|+|+-.++..-.. | ....-....|+.|+=-|-+ +|+.|.
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-------g----~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNM-------G----FFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEec-------c----ceEEEEEecCCCcCCcceeecccccCCC
Confidence 345888887664 569999999766543100 0 0000013578888877765 477773
No 108
>PRK14289 chaperone protein DnaJ; Provisional
Probab=84.51 E-value=0.81 Score=47.35 Aligned_cols=56 Identities=27% Similarity=0.569 Sum_probs=35.3
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+. ..|..|+|+-+++..-..- .| .--....|+.|+-.|-+ +|+.|-
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~G------~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTI-----LG------TMQTQSTCPTCNGEGKIIKKKCKKCG 218 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecc-----cc------eEEEEEecCCCCccccccCcCCCCCC
Confidence 356888877654 6799999997766541100 00 00024689999888865 688873
No 109
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=84.05 E-value=4 Score=33.21 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh----C--CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--CCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKG----L--GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV--GKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~----~--gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV--dGe 321 (423)
...|+||+ ..++|+.|. +..+|+. + ++.+..+|++.+. ++...++ ...+|.++| +|+
T Consensus 13 ~~~vlv~f------~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~----~l~~~~~----v~~vPt~~i~~~g~ 78 (97)
T cd02949 13 DRLILVLY------TSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ----EIAEAAG----IMGTPTVQFFKDKE 78 (97)
T ss_pred CCeEEEEE------ECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH----HHHHHCC----CeeccEEEEEECCe
Confidence 33455565 348999887 4555543 3 3677788876543 4555544 357887665 665
Q ss_pred EE
Q 045109 322 YI 323 (423)
Q Consensus 322 ~I 323 (423)
.+
T Consensus 79 ~v 80 (97)
T cd02949 79 LV 80 (97)
T ss_pred EE
Confidence 54
No 110
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=83.97 E-value=5.7 Score=30.28 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCcEEEEECCCCh--hhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 271 CCHVRVILKGLGVRVDERDLSMHS--GFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 271 Cc~VK~LL~~~gV~yeErDVsmd~--~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
+.+++-+|+..|+.|+.+.++... ....++.+. ....++|.+..+|..|.....+.+..
T Consensus 11 ~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~----~p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 11 SFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAI----NPLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred hHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhc----CCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 446899999999999998886532 123444442 23468999999999898888877643
No 111
>PRK14285 chaperone protein DnaJ; Provisional
Probab=83.94 E-value=0.96 Score=46.62 Aligned_cols=38 Identities=29% Similarity=0.718 Sum_probs=30.2
Q ss_pred ccccccCccceE-----------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 357 GACEACGDVRFV-----------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 357 ~~C~~CGG~rfV-----------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
..|..|.|.+.+ +|+.|+|.-++.. .+|..|+-.|.++
T Consensus 164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v~ 212 (365)
T PRK14285 164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS-----------------------NPCKSCKGKGSLK 212 (365)
T ss_pred ccCCCccCceeEEecCceeEEeeecCCCCCcccccC-----------------------CCCCCCCCCCEEe
Confidence 469999998754 8999999987643 2599999988763
No 112
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=83.87 E-value=5.6 Score=37.44 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=39.0
Q ss_pred HhhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh----C-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 245 LDHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKG----L-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 245 v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~----~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
.+.+-+.-.|++|+++ ..+||+.|. +..+|+. + ++.+..++++.+ ...++.+.++ -.++|.+.+
T Consensus 14 ~~~~~~~~~i~~f~~~----~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~--~~~~l~~~~~----V~~~Pt~~~ 83 (215)
T TIGR02187 14 LKELKNPVEIVVFTDN----DKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP--EDKEEAEKYG----VERVPTTII 83 (215)
T ss_pred HHhcCCCeEEEEEcCC----CCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc--ccHHHHHHcC----CCccCEEEE
Confidence 3334445567777542 358998776 5555543 3 355666777643 2345555554 346787766
Q ss_pred --CCEEE
Q 045109 319 --GKKYI 323 (423)
Q Consensus 319 --dGe~I 323 (423)
+|+.+
T Consensus 84 f~~g~~~ 90 (215)
T TIGR02187 84 LEEGKDG 90 (215)
T ss_pred EeCCeee
Confidence 65443
No 113
>PRK14292 chaperone protein DnaJ; Provisional
Probab=83.78 E-value=0.9 Score=46.70 Aligned_cols=55 Identities=29% Similarity=0.679 Sum_probs=35.0
Q ss_pred CccccccCccc-------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 356 VGACEACGDVR-------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 356 ~~~C~~CGG~r-------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
...|..|.|.+ ...|..|+|+-.+...-..- -| .. . ....|+.|+-.|.+ +|+.|
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~-----~g----~~-~-~~~~C~~C~G~G~~~~~~C~~C 203 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTI-----FG----VV-E-TQQPCPTCRGEGQIITDPCTVC 203 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEecc-----Cc----eE-E-EeeecCCCcccceecCCCCCCC
Confidence 35699998865 46799999997665431000 00 00 0 13589999998866 68887
No 114
>PRK14280 chaperone protein DnaJ; Provisional
Probab=83.75 E-value=0.86 Score=47.12 Aligned_cols=56 Identities=30% Similarity=0.730 Sum_probs=34.4
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+ ...|..|+|+-.++.....- .| .--....|+.|+-.|.+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~g------~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTP-----FG------RVVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecC-----Cc------eEEEEEEcCCCCCCCceecCCCCCCC
Confidence 34688888866 46799999987665441100 00 00024578888888864 577774
No 115
>PRK14282 chaperone protein DnaJ; Provisional
Probab=83.67 E-value=0.93 Score=46.69 Aligned_cols=55 Identities=27% Similarity=0.651 Sum_probs=33.8
Q ss_pred ccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 357 GACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 357 ~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
..|..|.|.+ ...|..|+|+-.++..-..- -| .--....|+.|+-.|.+ +|+.|.
T Consensus 153 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~G------~~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSF-----FG------VFVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEcc-----Cc------ceEEEEECCCCCCcceeCCCCCCCCC
Confidence 4588887765 46799999997765431100 00 00024688888888865 577763
No 116
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=83.65 E-value=0.91 Score=46.26 Aligned_cols=55 Identities=27% Similarity=0.638 Sum_probs=33.6
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
...|..|.|.+ ...|..|+|+-.++..... .-|. .. ....|+.|+-.|.+ +|+.|
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-----~~g~-----~~-~~~~C~~C~G~G~~~~~~C~~C 206 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGT-----PFGF-----FQ-QQQTCPTCGGEGKIIKEPCSTC 206 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEec-----cCCc-----eE-EEEecCCCCCcceecCCCCCCC
Confidence 34588888766 5679999998766543110 0000 00 13588888888865 57777
No 117
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=83.63 E-value=4.2 Score=39.77 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=49.8
Q ss_pred CCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHHH
Q 045109 264 IRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHE 334 (423)
Q Consensus 264 IRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~LhE 334 (423)
.+...|++|. |+-+|..+||.|+.+.|++... .+++.++- ...+||.+..+|..|.....|.+..+
T Consensus 14 ~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in----P~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 14 ESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA----PGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC----cCCCCCEEEECCEEeecHHHHHHHHH
Confidence 3456799887 8999999999999999876532 24554432 23589999889999999888888544
No 118
>PRK14279 chaperone protein DnaJ; Provisional
Probab=83.56 E-value=0.86 Score=47.46 Aligned_cols=50 Identities=30% Similarity=0.613 Sum_probs=28.7
Q ss_pred ccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 357 GACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 357 ~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
..|..|.|.+. ..|..|+|+-.++... +. . .....|+.|+-.|.+ +|+.|
T Consensus 174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------g~-----~-~~~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ---------GA-----F-GFSEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred ccCCCCccccccCCCCCCCCCCCcceEEEEEEe---------cc-----e-EEEEecCCCCceeEEeCCcCCCC
Confidence 45777777654 5678888876554431 00 0 023567777776643 45555
No 119
>PRK14286 chaperone protein DnaJ; Provisional
Probab=83.56 E-value=0.87 Score=47.05 Aligned_cols=51 Identities=27% Similarity=0.674 Sum_probs=31.5
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
...|..|.|.+. ..|..|+|+-.+.... |. .. ....|+.|+--|.+ +|+.|
T Consensus 150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------G~-----~~-~~~~C~~C~G~G~~~~~~C~~C 209 (372)
T PRK14286 150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ---------GF-----FS-VATTCPTCRGKGTVISNPCKTC 209 (372)
T ss_pred cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe---------ce-----EE-EEEeCCCCCceeeEecccCCCC
Confidence 345888877664 6788888886654431 00 01 24578888777743 56666
No 120
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=83.49 E-value=2.3 Score=36.07 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=27.3
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHc
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLG 305 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg 305 (423)
+.|.-|+ |+++|+.+||.|+.+|+..++--++||.+++.
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~ 43 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLS 43 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHH
Confidence 4577555 99999999999999999877777788887765
No 121
>PRK14295 chaperone protein DnaJ; Provisional
Probab=83.40 E-value=0.86 Score=47.41 Aligned_cols=51 Identities=35% Similarity=0.785 Sum_probs=32.0
Q ss_pred ccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 357 GACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 357 ~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
..|..|.|.+. ..|..|+|+-.++..- +. + ....+|+.|+-.|.+ +|+.|.
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------g~---~---~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS---------GG---F---SLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe---------cc---e---EEEEecCCCcceeEEeccCCCCCC
Confidence 45777777653 6788888887655431 10 0 124678888888865 477763
No 122
>PRK14301 chaperone protein DnaJ; Provisional
Probab=83.35 E-value=0.9 Score=46.97 Aligned_cols=50 Identities=30% Similarity=0.715 Sum_probs=30.2
Q ss_pred ccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 357 GACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 357 ~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
..|..|.|.+. ..|..|+|+-.+.... |. .. ....|+.|+-.|.+ +|+.|
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------G~-----~~-~~~~C~~C~G~G~~~~~~C~~C 203 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---------GF-----FQ-IAVPCPVCRGEGRVITHPCPKC 203 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEe---------ee-----EE-EEEeCCCCCceeeecCCCCCCC
Confidence 45777777653 5688888876655331 00 00 24678888777754 57666
No 123
>PRK14296 chaperone protein DnaJ; Provisional
Probab=83.21 E-value=0.91 Score=46.95 Aligned_cols=38 Identities=29% Similarity=0.767 Sum_probs=29.9
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|+|.+.+ +|+.|+|.-++.. .+|+.|+-.|.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 218 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK-----------------------NKCKNCKGKGKY 218 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec-----------------------ccccCCCCceEE
Confidence 3569999998754 7999999987753 259999988865
No 124
>PRK14277 chaperone protein DnaJ; Provisional
Probab=83.16 E-value=0.99 Score=46.84 Aligned_cols=55 Identities=22% Similarity=0.600 Sum_probs=30.7
Q ss_pred ccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 357 GACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 357 ~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
..|..|.|.+ ...|..|+|+-.++..-..- -|. . -....|+.|+-.|.+ +|+.|.
T Consensus 156 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~G~----~--~~~~~C~~C~G~G~~~~~~C~~C~ 219 (386)
T PRK14277 156 EKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTP-----FGR----I--VNIRTCDRCHGEGKIITDPCNKCG 219 (386)
T ss_pred ccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEecc-----Cce----E--EEEEECCCCCcceeeccCCCCCCC
Confidence 4577776654 46788888886654331000 000 0 013578888877755 477663
No 125
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=83.13 E-value=0.41 Score=45.63 Aligned_cols=88 Identities=23% Similarity=0.443 Sum_probs=59.0
Q ss_pred CCCceEeCCEEEcchHHHHHHHHcCchHHHHcccccccCCCCCCCccccccCccceEeCCCCCCcceeccccchhhhccc
Q 045109 312 GLPRVFVGKKYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGRGNVGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDS 391 (423)
Q Consensus 312 TVPQVFVdGe~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~ 391 (423)
..|.-+++.-++=...+|.++ .+|.|.+.|+.+-..-. ..-..|+-|.+.+| .|+.|+.+ .+++.-+
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v-~~G~L~~~L~~l~~~~~---~HV~~C~lC~~kGf-iCe~C~~~-~~IfPF~------- 168 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQV-KSGQLLPQLEKLVQFAE---KHVYSCELCQQKGF-ICEICNSD-DIIFPFQ------- 168 (202)
T ss_pred cchhhhhhCCceEcHHHHHHH-hhchHHHHHHHHHHHHH---HHHHHhHHHHhCCC-CCccCCCC-CCCCCCC-------
Confidence 356666666777778888887 47899998876532210 01236999999998 89999998 6665511
Q ss_pred CCCCccccCccceeeCCCCCCCC------cccCCCC
Q 045109 392 EGGWVGEEADFGFQRCPDCNENG------LTRCPIC 421 (423)
Q Consensus 392 ~~~~~~~~~~~~~~RC~~CNENG------LirCp~C 421 (423)
.....||+.|+--= ...||.|
T Consensus 169 ---------~~~~~~C~~C~~v~H~~C~~~~~CpkC 195 (202)
T PF13901_consen 169 ---------IDTTVRCPKCKSVFHKSCFRKKSCPKC 195 (202)
T ss_pred ---------CCCeeeCCcCccccchhhcCCCCCCCc
Confidence 11478999987421 1557777
No 126
>PRK14276 chaperone protein DnaJ; Provisional
Probab=83.11 E-value=0.9 Score=47.03 Aligned_cols=56 Identities=25% Similarity=0.544 Sum_probs=33.3
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+. ..|..|+|+-.+...-... -| .--....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~G------~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTP-----LG------MMRRQVTCDVCHGTGKEIKEPCQTCH 210 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecC-----Cc------eEEEEEECCCCCCCCccccCCCCCCC
Confidence 346888887664 6799999987665431000 00 00014578888877754 577773
No 127
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=83.02 E-value=2.3 Score=45.24 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=39.5
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCE
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK 321 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe 321 (423)
+-+.-.|.+|. ...||+|. |+++++.+ .|..+.+|....+ ++.+.. +-.+||++||||+
T Consensus 114 ~~~~~~i~~fv-------~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~----~~~~~~----~v~~VP~~~i~~~ 178 (517)
T PRK15317 114 LDGDFHFETYV-------SLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ----DEVEAR----NIMAVPTVFLNGE 178 (517)
T ss_pred cCCCeEEEEEE-------cCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH----hHHHhc----CCcccCEEEECCc
Confidence 43456788994 45699886 55555443 5677777765332 333333 3348999999997
Q ss_pred EEc
Q 045109 322 YIG 324 (423)
Q Consensus 322 ~IG 324 (423)
.+.
T Consensus 179 ~~~ 181 (517)
T PRK15317 179 EFG 181 (517)
T ss_pred EEE
Confidence 654
No 128
>PRK14297 chaperone protein DnaJ; Provisional
Probab=82.87 E-value=1 Score=46.64 Aligned_cols=56 Identities=23% Similarity=0.607 Sum_probs=34.3
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+. ..|..|+|+-.++..... . -| .-....+|+.|+--|.+ +|+.|.
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-~----~G------~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNT-P----LG------SFVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEc-C----Cc------eeEEEEeCCCCCCCceEcCCCCCCCC
Confidence 345888888664 579999999766543100 0 00 00124688888888865 577773
No 129
>PRK10767 chaperone protein DnaJ; Provisional
Probab=82.86 E-value=1.1 Score=46.19 Aligned_cols=38 Identities=32% Similarity=0.734 Sum_probs=29.4
Q ss_pred ccccccCccceE-----------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 357 GACEACGDVRFV-----------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 357 ~~C~~CGG~rfV-----------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
..|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v~ 208 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK-----------------------DPCKKCHGQGRVE 208 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-----------------------CCCCCCCCCceEe
Confidence 469999998766 5999999977642 2599999888653
No 130
>PRK14291 chaperone protein DnaJ; Provisional
Probab=82.86 E-value=0.94 Score=46.91 Aligned_cols=51 Identities=37% Similarity=0.702 Sum_probs=34.2
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc--cCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT--RCPIC 421 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi--rCp~C 421 (423)
...|..|.|.+ ...|..|+|+-.++....+ ......|+.|+--|.+ .|+.|
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~---------------~~~~~~C~~C~G~G~~~~~C~~C 214 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGF---------------FRISQTCPTCGGEGVLREPCSKC 214 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecce---------------EEEEecCCCCCCceEEccCCCCC
Confidence 35688888866 5679999999776654210 0124678888888854 47766
No 131
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=82.73 E-value=1 Score=47.56 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhcCCC
Q 045109 199 PDVIKTFRKSFQELSPR 215 (423)
Q Consensus 199 p~~is~frkal~~~~~~ 215 (423)
.+|-.||||.....-|+
T Consensus 43 ~eIKkAYrkla~k~HPD 59 (421)
T PTZ00037 43 SEIKKAYRKLAIKHHPD 59 (421)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 56889999876665444
No 132
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=82.68 E-value=16 Score=28.64 Aligned_cols=59 Identities=14% Similarity=0.302 Sum_probs=35.9
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-H----HHHHHhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--CCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-V----RVILKGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV--GKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-V----K~LL~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV--dGe 321 (423)
...|+||+. .++|+.|. + +++.+.++ +.|-..|.+.+. ++.+.++ ..++|.+++ +|+
T Consensus 14 ~~~vvi~f~------~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 14 DKPVLVDFW------APWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP----DIAAKYG----IRSIPTLLLFKNGK 79 (101)
T ss_pred CCcEEEEEE------CCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHcC----CCcCCEEEEEeCCc
Confidence 346777764 37898776 3 33333443 777788876443 4444443 458998777 775
Q ss_pred EE
Q 045109 322 YI 323 (423)
Q Consensus 322 ~I 323 (423)
.+
T Consensus 80 ~~ 81 (101)
T TIGR01068 80 EV 81 (101)
T ss_pred Ee
Confidence 43
No 133
>PRK14288 chaperone protein DnaJ; Provisional
Probab=82.66 E-value=1.1 Score=46.33 Aligned_cols=50 Identities=24% Similarity=0.655 Sum_probs=28.9
Q ss_pred ccccccCccce-----EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 357 GACEACGDVRF-----VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 357 ~~C~~CGG~rf-----VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
..|..|.|.+. ..|..|+|+-.+.....+ . .....|+.|+-.|.+ +|+.|
T Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~--------------~-~~~~~C~~C~G~G~~~~~~C~~C 198 (369)
T PRK14288 141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQGF--------------M-SFAQTCGACQGKGKIIKTPCQAC 198 (369)
T ss_pred ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEece--------------E-EEEEecCCCCCCceEccccCccC
Confidence 35777777553 457788877665543100 0 123467777777743 46666
No 134
>PRK14288 chaperone protein DnaJ; Provisional
Probab=82.53 E-value=1.1 Score=46.35 Aligned_cols=39 Identities=26% Similarity=0.641 Sum_probs=30.7
Q ss_pred CccccccCccceE-----------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 356 VGACEACGDVRFV-----------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 356 ~~~C~~CGG~rfV-----------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
...|..|+|.+.+ +|+.|+|.-++... .|+.|+-.|.++
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-----------------------~C~~C~G~g~v~ 205 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKT-----------------------PCQACKGKTYIL 205 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccc-----------------------cCccCCCcceEE
Confidence 4579999998865 69999999886422 499999888763
No 135
>PRK14284 chaperone protein DnaJ; Provisional
Probab=82.33 E-value=1 Score=46.84 Aligned_cols=38 Identities=21% Similarity=0.667 Sum_probs=29.9
Q ss_pred CccccccCccce-----------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRF-----------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rf-----------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|+|.+. .+|+.|+|.-++.. ..|+.|+-.|.+
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 223 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT-----------------------DPCSVCRGQGRI 223 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC-----------------------CcCCCCCCccee
Confidence 356999999977 58999999976532 259999988876
No 136
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=82.21 E-value=1.4 Score=34.77 Aligned_cols=25 Identities=32% Similarity=0.733 Sum_probs=18.1
Q ss_pred CccccccCccceE---------------eCCCCCCcceec
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIY 380 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~ 380 (423)
...|..|.|.+++ +|+.|+|+-+++
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 5679999997765 799999998887
No 137
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=82.20 E-value=4.2 Score=31.32 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=41.4
Q ss_pred CCCcHH-HHHHHHHhCCCcEEEEECCCCh--hhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 267 TYEDCC-HVRVILKGLGVRVDERDLSMHS--GFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 267 T~c~Cc-~VK~LL~~~gV~yeErDVsmd~--~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
...+++ +|+-+|+..|+.|+.++++... ....++.+. ....++|.+-.+|..|.....+.+
T Consensus 7 ~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~----nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 7 RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAM----NPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhh----CCCCCCCEEEECCEEEECHHHHHH
Confidence 345554 6999999999999988876422 122344442 234589999888888877666654
No 138
>PRK14282 chaperone protein DnaJ; Provisional
Probab=82.10 E-value=1.3 Score=45.75 Aligned_cols=39 Identities=31% Similarity=0.705 Sum_probs=30.6
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
...|..|.|.+.+ +|+.|+|.-++.. .+|..|+..|.+.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v~ 222 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG-----------------------EYCHECGGSGRIR 222 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC-----------------------CCCCCCCCceeEE
Confidence 3579999998764 6999999987642 2599999988764
No 139
>PRK14298 chaperone protein DnaJ; Provisional
Probab=82.09 E-value=1.2 Score=46.12 Aligned_cols=56 Identities=23% Similarity=0.651 Sum_probs=34.6
Q ss_pred CccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+. ..|..|+|+-.++..-..- .+ ..-....|+.|+-.|-+ +|+.|-
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~g------~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTP-----LG------QFVTTTTCSTCHGRGQVIESPCPVCS 205 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecC-----ce------eEEEEEeCCCCCCCCcccCCCCCCCC
Confidence 345888888665 6799999997665431100 00 00124678888888854 677773
No 140
>PRK14294 chaperone protein DnaJ; Provisional
Probab=82.09 E-value=1.2 Score=45.83 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=32.1
Q ss_pred ccccccCccce------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 357 GACEACGDVRF------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 357 ~~C~~CGG~rf------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
..|..|.|.+. ..|..|+|+-.+.... |. -. ....|+.|+-.|.+ +|+.|
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------G~-----~~-~~~~C~~C~G~G~~~~~~C~~C 203 (366)
T PRK14294 145 ETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ---------GF-----FS-IRTTCPRCRGMGKVIVSPCKTC 203 (366)
T ss_pred ccCCCCCCccccCCCCcccCCCcCCeEEEEEEe---------ee-----EE-EEeeCCCCCCcCeecCcCCCCC
Confidence 45888877664 5788888887655331 00 01 24678888888865 57776
No 141
>PRK14298 chaperone protein DnaJ; Provisional
Probab=82.03 E-value=1.1 Score=46.40 Aligned_cols=38 Identities=34% Similarity=0.841 Sum_probs=29.4
Q ss_pred ccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 357 GACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 357 ~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
..|..|.|.+.+ +|..|+|.-++.. .+|+.|+-.|.+.
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v~ 211 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE-----------------------SPCPVCSGTGKVR 211 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC-----------------------CCCCCCCCccEEE
Confidence 569999998754 7999999977542 2599999888753
No 142
>PRK14286 chaperone protein DnaJ; Provisional
Probab=81.87 E-value=1.1 Score=46.19 Aligned_cols=38 Identities=29% Similarity=0.795 Sum_probs=30.2
Q ss_pred ccccccCccceE-----------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 357 GACEACGDVRFV-----------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 357 ~~C~~CGG~rfV-----------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
..|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~~~ 216 (372)
T PRK14286 168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS-----------------------NPCKTCGGQGLQE 216 (372)
T ss_pred ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec-----------------------ccCCCCCCCcEEe
Confidence 579999998765 7999999987642 2599999888764
No 143
>PRK14301 chaperone protein DnaJ; Provisional
Probab=81.56 E-value=1.1 Score=46.28 Aligned_cols=38 Identities=32% Similarity=0.955 Sum_probs=30.1
Q ss_pred ccccccCccce-----------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 357 GACEACGDVRF-----------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 357 ~~C~~CGG~rf-----------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
..|..|.|.+. .+|..|+|.-++.. .+|+.|+-.|.++
T Consensus 162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v~ 210 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT-----------------------HPCPKCKGSGIVQ 210 (373)
T ss_pred cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC-----------------------CCCCCCCCCceec
Confidence 56999999875 48999999988642 2599999888763
No 144
>PRK14278 chaperone protein DnaJ; Provisional
Probab=81.52 E-value=1.1 Score=46.29 Aligned_cols=55 Identities=24% Similarity=0.560 Sum_probs=32.7
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCcc-ceeeCCCCCCCCcc---cCCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADF-GFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~-~~~RC~~CNENGLi---rCp~C~ 422 (423)
...|..|.|.+ ...|..|+|+-.++..... ..+.+ ....|+.|+-.|-+ +|+.|.
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~------------~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRS------------FLGQVMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred eccCCCCcCccCCCCCCceecCCccCceEEEEEEec------------cceeEEEEEECCCCCccceeeCCCCCCCC
Confidence 34588887765 4678888888665543100 00001 13578888887754 577774
No 145
>PRK14300 chaperone protein DnaJ; Provisional
Probab=81.33 E-value=1.2 Score=46.11 Aligned_cols=38 Identities=32% Similarity=0.765 Sum_probs=29.4
Q ss_pred CccccccCccceE-----------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV-----------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV-----------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|.|.+++ +|+.|+|.-++.. .+|+.|+-.|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK-----------------------NPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC-----------------------CCCCCCCCceEE
Confidence 3569999999876 6999999877642 259999988875
No 146
>PRK14281 chaperone protein DnaJ; Provisional
Probab=81.31 E-value=1.3 Score=46.28 Aligned_cols=53 Identities=30% Similarity=0.773 Sum_probs=30.4
Q ss_pred ccccccCccce-----EeCCCCCCcceeccccchhhhcccCCCCccccCcc-ceeeCCCCCCCCcc---cCCCC
Q 045109 357 GACEACGDVRF-----VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADF-GFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 357 ~~C~~CGG~rf-----VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~-~~~RC~~CNENGLi---rCp~C 421 (423)
..|..|.|.+. ..|..|+|+-.+...... ..+.+ ....|+.|+-.|.+ +|+.|
T Consensus 164 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~------------~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (397)
T PRK14281 164 VPCKECNGTGSKTGATETCPTCHGSGEVRQASKT------------MFGQFVNITACPTCGGEGRVVKDRCPAC 225 (397)
T ss_pred ecCCCCCCcccCCCCCccCCCCCCCcEEEEEEec------------ccceEEEEEecCCCcceeeeeCCCCCCC
Confidence 45777766553 468888888665433100 00000 13578888888854 57766
No 147
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=81.29 E-value=12 Score=32.02 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=38.3
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeC
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILK----GL-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVG 319 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVd 319 (423)
+-....||||+. .++|+-|+ +..+|+ .+ ++.+..+|++... ++.+.++ -.++|.+ |-+
T Consensus 19 i~~~~~vvV~f~------a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~----~l~~~~~----v~~vPt~l~fk~ 84 (113)
T cd02989 19 VKSSERVVCHFY------HPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP----FLVEKLN----IKVLPTVILFKN 84 (113)
T ss_pred HhCCCcEEEEEE------CCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH----HHHHHCC----CccCCEEEEEEC
Confidence 334577888864 57887555 554443 33 5788888886443 4555554 2356654 558
Q ss_pred CEEEc
Q 045109 320 KKYIG 324 (423)
Q Consensus 320 Ge~IG 324 (423)
|+-|+
T Consensus 85 G~~v~ 89 (113)
T cd02989 85 GKTVD 89 (113)
T ss_pred CEEEE
Confidence 87554
No 148
>PRK14295 chaperone protein DnaJ; Provisional
Probab=81.07 E-value=1.3 Score=46.15 Aligned_cols=37 Identities=27% Similarity=0.653 Sum_probs=28.9
Q ss_pred ccccccCccce-----------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 357 GACEACGDVRF-----------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 357 ~~C~~CGG~rf-----------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
..|..|.|.+. ++|+.|+|.-++.. .+|..|+-.|.+
T Consensus 184 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~~ 231 (389)
T PRK14295 184 RVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD-----------------------DPCLVCKGSGRA 231 (389)
T ss_pred cCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec-----------------------cCCCCCCCCceE
Confidence 56999999765 48999999987643 259999888865
No 149
>PRK14280 chaperone protein DnaJ; Provisional
Probab=80.90 E-value=1.5 Score=45.41 Aligned_cols=38 Identities=29% Similarity=0.807 Sum_probs=30.0
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|.|.+.+ +|..|+|.-++.. .+|+.|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK-----------------------EKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec-----------------------CCCCCCCCceEE
Confidence 3569999998654 7999999977643 259999988876
No 150
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=80.70 E-value=4.4 Score=38.14 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=34.3
Q ss_pred CCCCCcHHH-HHHHHHhC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCC--E-EEcch
Q 045109 265 RKTYEDCCH-VRVILKGL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGK--K-YIGGA 326 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdG--e-~IGGa 326 (423)
..++|+.|. ++.+|+.+ .|.+..+|++.. .++.+.++ -.++|.++|++ + ++|..
T Consensus 141 ~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~----~~~~~~~~----V~~vPtl~i~~~~~~~~G~~ 203 (215)
T TIGR02187 141 VTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN----PDLAEKYG----VMSVPKIVINKGVEEFVGAY 203 (215)
T ss_pred ECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC----HHHHHHhC----CccCCEEEEecCCEEEECCC
Confidence 347899887 67777654 366666776543 34555444 45799999975 3 55543
No 151
>PRK14293 chaperone protein DnaJ; Provisional
Probab=80.65 E-value=1.3 Score=45.74 Aligned_cols=55 Identities=27% Similarity=0.698 Sum_probs=34.6
Q ss_pred CccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCC
Q 045109 356 VGACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPIC 421 (423)
Q Consensus 356 ~~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C 421 (423)
...|..|.|.+ ...|..|+|+-.++..-..- .|. -. ...+|+.|+-.|-+ +|+.|
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~g~-----~~-~~~~C~~C~G~G~~~~~~C~~C 206 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTP-----FGS-----FT-QVSECPTCNGTGQVIEDPCDAC 206 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecC-----cce-----EE-EEeeCCCCCcceeEeccCCCCC
Confidence 34588887755 45799999997765431100 000 00 13689999999976 67777
No 152
>PRK14279 chaperone protein DnaJ; Provisional
Probab=80.62 E-value=1.3 Score=46.25 Aligned_cols=39 Identities=28% Similarity=0.816 Sum_probs=30.8
Q ss_pred CccccccCccceE-----------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 356 VGACEACGDVRFV-----------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 356 ~~~C~~CGG~rfV-----------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
...|..|.|.+.+ +|+.|+|.-++.. .+|..|+-.|.++
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~-----------------------~~C~~C~G~g~v~ 239 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE-----------------------DPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC-----------------------CcCCCCCCCeEEE
Confidence 3579999998765 7999999988643 2599999888763
No 153
>PRK14294 chaperone protein DnaJ; Provisional
Probab=80.16 E-value=1.4 Score=45.33 Aligned_cols=37 Identities=30% Similarity=0.760 Sum_probs=28.7
Q ss_pred ccccccCccceE-----------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 357 GACEACGDVRFV-----------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 357 ~~C~~CGG~rfV-----------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
..|..|.|.+.+ +|+.|+|.-++.. ..|..|+-.|.+
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 209 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV-----------------------SPCKTCHGQGRV 209 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC-----------------------cCCCCCCCceEe
Confidence 469999998754 7999999987642 259999988765
No 154
>PRK14276 chaperone protein DnaJ; Provisional
Probab=79.94 E-value=1.5 Score=45.51 Aligned_cols=38 Identities=26% Similarity=0.667 Sum_probs=29.6
Q ss_pred CccccccCccce---------------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRF---------------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rf---------------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|+|.+. .+|..|+|.-++.. .+|..|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK-----------------------EPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc-----------------------CCCCCCCCceEE
Confidence 356999999764 37999999977642 259999988875
No 155
>PRK14290 chaperone protein DnaJ; Provisional
Probab=79.03 E-value=1.7 Score=44.78 Aligned_cols=38 Identities=32% Similarity=0.801 Sum_probs=28.6
Q ss_pred CccccccCccce---------------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRF---------------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rf---------------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|+|.+. .+|..|+|.-++.. .+|+.|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE-----------------------EKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc-----------------------CCCCCCCCceeE
Confidence 356999998774 47999999877522 269999888775
No 156
>PRK14289 chaperone protein DnaJ; Provisional
Probab=79.02 E-value=1.6 Score=45.26 Aligned_cols=38 Identities=32% Similarity=0.794 Sum_probs=29.0
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.+
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------------------~~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----------------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----------------------CcCCCCCCCCcEE
Confidence 3579999987664 799999986653 2369999988875
No 157
>PRK14297 chaperone protein DnaJ; Provisional
Probab=78.70 E-value=1.8 Score=44.82 Aligned_cols=38 Identities=29% Similarity=0.820 Sum_probs=29.9
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE-----------------------DPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC-----------------------CCCCCCCCCeEE
Confidence 3569999998765 7999999987643 259999988865
No 158
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=78.68 E-value=1.8 Score=44.14 Aligned_cols=38 Identities=34% Similarity=0.815 Sum_probs=27.6
Q ss_pred ccccccCccce---------------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 357 GACEACGDVRF---------------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 357 ~~C~~CGG~rf---------------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
..|..|.|.+. .+|..|+|+-++... .|..|+-.|.++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~-----------------------~C~~C~G~g~v~ 213 (354)
T TIGR02349 161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKE-----------------------PCSTCKGKGRVK 213 (354)
T ss_pred ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCC-----------------------CCCCCCCCcEec
Confidence 45889988753 469999998776421 488888887764
No 159
>PRK14278 chaperone protein DnaJ; Provisional
Probab=78.62 E-value=1.9 Score=44.61 Aligned_cols=37 Identities=30% Similarity=0.793 Sum_probs=29.3
Q ss_pred ccccccCccce---------------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 357 GACEACGDVRF---------------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 357 ~~C~~CGG~rf---------------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
..|..|.|.+. .+|..|+|.-++.. .+|+.|+-.|.+
T Consensus 157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 208 (378)
T PRK14278 157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-----------------------DPCHECAGDGRV 208 (378)
T ss_pred eecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-----------------------CCCCCCCCceeE
Confidence 46999999764 47999999987642 259999998876
No 160
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=77.46 E-value=1.8 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.774 Sum_probs=12.9
Q ss_pred ccccccCccc-----eEeCCCCCCcce
Q 045109 357 GACEACGDVR-----FVPCETCSGSCK 378 (423)
Q Consensus 357 ~~C~~CGG~r-----fVpC~~C~GS~K 378 (423)
..|..|.|.+ ...|..|+|+-.
T Consensus 151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 151 VICANCEGHGGPKDAFVDCKLCNGQGI 177 (421)
T ss_pred ccccccCCCCCCCCCCccCCCCCCCCe
Confidence 3466665544 345777777754
No 161
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=76.41 E-value=1.9 Score=41.23 Aligned_cols=27 Identities=22% Similarity=0.687 Sum_probs=22.5
Q ss_pred CccccccCccceEe-----CCCCCCcceeccc
Q 045109 356 VGACEACGDVRFVP-----CETCSGSCKIYYE 382 (423)
Q Consensus 356 ~~~C~~CGG~rfVp-----C~~C~GS~Kv~~~ 382 (423)
...|..|+|.++++ |..|+|+-++...
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 35699999999986 9999999777654
No 162
>PRK14287 chaperone protein DnaJ; Provisional
Probab=76.12 E-value=1.9 Score=44.52 Aligned_cols=39 Identities=33% Similarity=0.808 Sum_probs=29.6
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
...|..|.|.+.+ +|+.|+|+-++.. .+|..|+-.|.+.
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v~ 208 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK-----------------------QKCATCGGKGKVR 208 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc-----------------------ccCCCCCCeeEEe
Confidence 3569999998753 6999999987642 2599998877653
No 163
>PRK14281 chaperone protein DnaJ; Provisional
Probab=76.02 E-value=2.2 Score=44.48 Aligned_cols=39 Identities=28% Similarity=0.807 Sum_probs=30.1
Q ss_pred CccccccCccce---------------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 356 VGACEACGDVRF---------------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 356 ~~~C~~CGG~rf---------------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
...|..|+|.+. .+|..|+|.-++.. .+|..|+-.|.+.
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v~ 232 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK-----------------------DRCPACYGEGIKQ 232 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC-----------------------CCCCCCCCCccEe
Confidence 356999999875 36999999987742 2599999888763
No 164
>PRK14283 chaperone protein DnaJ; Provisional
Probab=75.69 E-value=2.3 Score=44.01 Aligned_cols=55 Identities=27% Similarity=0.703 Sum_probs=34.4
Q ss_pred ccccccCccc------eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc---cCCCCC
Q 045109 357 GACEACGDVR------FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT---RCPICC 422 (423)
Q Consensus 357 ~~C~~CGG~r------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi---rCp~C~ 422 (423)
..|..|.|.+ ...|..|+|+-.++..-..- -| .-.....|+.|+-.|.+ +|..|.
T Consensus 147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-----~g------~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (378)
T PRK14283 147 KKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTI-----LG------QMMNVTTCPDCQGEGKIVEKPCSNCH 210 (378)
T ss_pred ccCCCCCccccCCCCCCccCCCcCCccEEEEEEecc-----Cc------eEEEEEECCCCCccceecCCCCCCCC
Confidence 4577777754 56799999997765431100 00 00124689999988876 788873
No 165
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=75.45 E-value=21 Score=29.37 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-HHHHH----HhCC---CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCc--eEeC
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-VRVIL----KGLG---VRVDERDLSMHSGFKNELKELLGDGFSGGGLPR--VFVG 319 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL----~~~g---V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQ--VFVd 319 (423)
....|+||+. .+||+.|+ +..+| +.++ +.+...|++ . .++.+.++ ...+|. +|-+
T Consensus 16 ~~~~vvv~F~------a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~----~~~~~~~~----v~~~Pt~~~~~~ 80 (102)
T cd02948 16 NKGLTVVDVY------QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T----IDTLKRYR----GKCEPTFLFYKN 80 (102)
T ss_pred cCCeEEEEEE------CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C----HHHHHHcC----CCcCcEEEEEEC
Confidence 3455677764 58999887 33333 4443 456666765 2 23444443 346784 4457
Q ss_pred CEE
Q 045109 320 KKY 322 (423)
Q Consensus 320 Ge~ 322 (423)
|+.
T Consensus 81 g~~ 83 (102)
T cd02948 81 GEL 83 (102)
T ss_pred CEE
Confidence 753
No 166
>PRK14277 chaperone protein DnaJ; Provisional
Probab=75.25 E-value=2.3 Score=44.22 Aligned_cols=38 Identities=29% Similarity=0.684 Sum_probs=30.4
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT-----------------------DPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc-----------------------CCCCCCCCCcEE
Confidence 3569999998654 7999999987743 259999998876
No 167
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=74.98 E-value=26 Score=27.55 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=37.0
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHH----HhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--CCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVIL----KGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV--GKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL----~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV--dGe 321 (423)
...||||++ ..+|+.|. ++..| +.+. |.+-.+|.+.. .++.+.++ -..+|.+++ +|+
T Consensus 17 ~~~vvv~f~------~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~----v~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 17 DKPVVVYFY------APWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN----KELCKKYG----VKSVPTIIFFKNGK 82 (103)
T ss_dssp SSEEEEEEE------STTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS----HHHHHHTT----CSSSSEEEEEETTE
T ss_pred CCCEEEEEe------CCCCCccccccceecccccccccccccchhhhhcc----chhhhccC----CCCCCEEEEEECCc
Confidence 577888864 47899886 44333 4444 77888888644 34555554 346887654 664
Q ss_pred EE
Q 045109 322 YI 323 (423)
Q Consensus 322 ~I 323 (423)
.+
T Consensus 83 ~~ 84 (103)
T PF00085_consen 83 EV 84 (103)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 168
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=74.83 E-value=13 Score=31.18 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeCCEEE
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VRVILK----GL-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVGKKYI 323 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVdGe~I 323 (423)
..|||++. .++|+-|. +...|+ .+ ++.|...|++.. +|.+.++ -..+|.+ |-+|+.+
T Consensus 25 ~~vvv~F~------a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~----i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 25 TRVVVHFY------EPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLD----IKVLPTLLVYKNGELI 89 (113)
T ss_pred CEEEEEEe------CCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcC----CCcCCEEEEEECCEEE
Confidence 56777654 47887665 444443 44 467777777521 5555554 3467754 6689877
Q ss_pred cchHHH
Q 045109 324 GGAEEI 329 (423)
Q Consensus 324 GGaDEV 329 (423)
+...-.
T Consensus 90 ~~~~G~ 95 (113)
T cd02957 90 DNIVGF 95 (113)
T ss_pred EEEecH
Confidence 544433
No 169
>PRK09381 trxA thioredoxin; Provisional
Probab=74.65 E-value=19 Score=29.57 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HH----HHHHhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--CCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VR----VILKGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV--GKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK----~LL~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV--dGe 321 (423)
...|+|++. .++|+.|. +. ++.+.++ +.+-..|++... ++...++ ..++|.+++ +|+
T Consensus 21 ~~~vvv~f~------~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~~Pt~~~~~~G~ 86 (109)
T PRK09381 21 DGAILVDFW------AEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP----GTAPKYG----IRGIPTLLLFKNGE 86 (109)
T ss_pred CCeEEEEEE------CCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh----hHHHhCC----CCcCCEEEEEeCCe
Confidence 556777764 46999776 33 3444443 566777776443 3333333 468998765 887
Q ss_pred EEc
Q 045109 322 YIG 324 (423)
Q Consensus 322 ~IG 324 (423)
.++
T Consensus 87 ~~~ 89 (109)
T PRK09381 87 VAA 89 (109)
T ss_pred EEE
Confidence 664
No 170
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.24 E-value=2.4 Score=44.09 Aligned_cols=55 Identities=24% Similarity=0.547 Sum_probs=33.4
Q ss_pred CccccccCccc--------eEeCCCCCCcceeccccchhhhcccCCCCc--cccCccceeeCCCCCCCCcccCCCC
Q 045109 356 VGACEACGDVR--------FVPCETCSGSCKIYYEKEEEVEEDSEGGWV--GEEADFGFQRCPDCNENGLTRCPIC 421 (423)
Q Consensus 356 ~~~C~~CGG~r--------fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~--~~~~~~~~~RC~~CNENGLirCp~C 421 (423)
.-+|.+|-|.+ -+-|..|.| +.... +|..+ .--...+.++|+.|---|++.|..|
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G---~~~~k--------~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC 262 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTG---VPPPK--------IGTHDLCYMCHGRGIKECHTCKGRGKKPCTTC 262 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccC---CCCCC--------CCccchhhhccCCCcccCCcccCCCCcccccc
Confidence 56799999999 899999999 22221 01000 0001124566777777777777766
No 171
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=72.84 E-value=2.8 Score=43.49 Aligned_cols=57 Identities=28% Similarity=0.496 Sum_probs=37.4
Q ss_pred CccccccCccce-----EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc-----cCCCCC
Q 045109 356 VGACEACGDVRF-----VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT-----RCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rf-----VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi-----rCp~C~ 422 (423)
...|..|-|.++ -+|..|.|+.-....-.. +- -..+...++|..||..|-+ +|+.|.
T Consensus 127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~-------gP---g~~qs~q~~C~~C~G~G~~~~~kd~C~~C~ 193 (337)
T KOG0712|consen 127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQM-------GP---GMVQSPQLVCDSCNGSGETISLKDRCKTCS 193 (337)
T ss_pred CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEec-------cc---cccccceeEeccCCCccccccccccCcccc
Confidence 356888877554 359999999443322110 00 0123347999999999999 999994
No 172
>PRK14293 chaperone protein DnaJ; Provisional
Probab=72.58 E-value=3 Score=43.05 Aligned_cols=24 Identities=33% Similarity=0.906 Sum_probs=18.0
Q ss_pred ccccccCccceE---------------eCCCCCCcceec
Q 045109 357 GACEACGDVRFV---------------PCETCSGSCKIY 380 (423)
Q Consensus 357 ~~C~~CGG~rfV---------------pC~~C~GS~Kv~ 380 (423)
..|..|.|.+.+ +|..|+|.-++.
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI 199 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe
Confidence 458888887753 688888887753
No 173
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=72.49 E-value=8.7 Score=41.44 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=38.9
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-H----HHHHHhC-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCE--
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-V----RVILKGL-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKK-- 321 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-V----K~LL~~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe-- 321 (423)
+.-.|.||.| +.|++|. + .++.... +|..+.+|+... .|+.+.. +-.+||.+||||+
T Consensus 476 ~~~~i~v~~~-------~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~----~~~~~~~----~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 476 KPVNIKIGVS-------LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF----PDLKDEY----GIMSVPAIVVDDQQV 540 (555)
T ss_pred CCeEEEEEEC-------CCCCCcHHHHHHHHHHHHhCCCceEEEEECccc----HHHHHhC----CceecCEEEECCEEE
Confidence 3445778733 5688875 3 4445555 799999998643 2444333 3458999999995
Q ss_pred EEc
Q 045109 322 YIG 324 (423)
Q Consensus 322 ~IG 324 (423)
+.|
T Consensus 541 ~~G 543 (555)
T TIGR03143 541 YFG 543 (555)
T ss_pred Eee
Confidence 445
No 174
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.29 E-value=3.3 Score=43.53 Aligned_cols=39 Identities=28% Similarity=0.712 Sum_probs=30.0
Q ss_pred CccccccCccce-------------EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 356 VGACEACGDVRF-------------VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 356 ~~~C~~CGG~rf-------------VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
...|..|.|.+. +.|+.|+|+-+++-+ .|+.|+-.|.++
T Consensus 159 ~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~-----------------------pC~~C~G~G~v~ 210 (371)
T COG0484 159 PKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKD-----------------------PCGKCKGKGRVK 210 (371)
T ss_pred CCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCC-----------------------CCCCCCCCCeEe
Confidence 457999998763 579999999877632 599998877653
No 175
>PRK14292 chaperone protein DnaJ; Provisional
Probab=71.89 E-value=3.1 Score=42.81 Aligned_cols=38 Identities=34% Similarity=0.764 Sum_probs=28.2
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|+|.+.+ +|..|+|.-+... .+|..|+-.|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT-----------------------DPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC-----------------------CCCCCCCCceEE
Confidence 3569999997654 5999999876532 359999887765
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.43 E-value=3.5 Score=44.38 Aligned_cols=46 Identities=28% Similarity=0.602 Sum_probs=34.3
Q ss_pred CccccccCccceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCC--cccCCCCC
Q 045109 356 VGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENG--LTRCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENG--LirCp~C~ 422 (423)
.-.|..||-. +.|+.|+++-..... ...++|..|+-.- -.+||.|-
T Consensus 213 ~~~C~~Cg~~--~~C~~C~~~l~~h~~-------------------~~~l~Ch~Cg~~~~~~~~Cp~C~ 260 (505)
T TIGR00595 213 NLLCRSCGYI--LCCPNCDVSLTYHKK-------------------EGKLRCHYCGYQEPIPKTCPQCG 260 (505)
T ss_pred eeEhhhCcCc--cCCCCCCCceEEecC-------------------CCeEEcCCCcCcCCCCCCCCCCC
Confidence 4579999975 789999998554432 1378999998664 45799994
No 177
>PRK14283 chaperone protein DnaJ; Provisional
Probab=70.23 E-value=3.6 Score=42.54 Aligned_cols=38 Identities=34% Similarity=0.871 Sum_probs=26.9
Q ss_pred CccccccCccceE---------------eCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 356 VGACEACGDVRFV---------------PCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 356 ~~~C~~CGG~rfV---------------pC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
...|..|.|.+.+ +|..|+|.-+... ..|..|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----------------------~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE-----------------------KPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC-----------------------CCCCCCCCceee
Confidence 3468888887654 5888888876532 248888877765
No 178
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=69.47 E-value=16 Score=30.86 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=31.5
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HHHHH-------Hh--CCCcEEEEECCCChh---------hHHHHHHHHcCCCCCCC
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VRVIL-------KG--LGVRVDERDLSMHSG---------FKNELKELLGDGFSGGG 312 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK~LL-------~~--~gV~yeErDVsmd~~---------~reEL~~lLg~~tg~~T 312 (423)
..|+|++ ..++|+.|. +...| +. .++.+..+|++.+.. -..++..+++ ...
T Consensus 15 k~vlv~f------~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~----v~~ 84 (125)
T cd02951 15 KPLLLLF------SQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR----VRF 84 (125)
T ss_pred CcEEEEE------eCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC----Ccc
Confidence 3677775 458999887 33322 11 234455566543211 1245555554 357
Q ss_pred CCc-eEeCC
Q 045109 313 LPR-VFVGK 320 (423)
Q Consensus 313 VPQ-VFVdG 320 (423)
+|. +|+++
T Consensus 85 ~Pt~~~~~~ 93 (125)
T cd02951 85 TPTVIFLDP 93 (125)
T ss_pred ccEEEEEcC
Confidence 898 45554
No 179
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=69.39 E-value=13 Score=33.33 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHHhCCCcEEEEECCCChhhH---HHHHHHHcCCCCCCCCCceEeCCEEE--cchHHHHHHH
Q 045109 274 VRVILKGLGVRVDERDLSMHSGFK---NELKELLGDGFSGGGLPRVFVGKKYI--GGAEEIRRMH 333 (423)
Q Consensus 274 VK~LL~~~gV~yeErDVsmd~~~r---eEL~~lLg~~tg~~TVPQVFVdGe~I--GGaDEV~~Lh 333 (423)
+.+.|+..||.+..+++..++... ..+.++|.. .|...||.++|||+.+ |.|-...+|.
T Consensus 32 ~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G~e~LPitlVdGeiv~~G~YPt~eEl~ 95 (123)
T PF06953_consen 32 DLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EGAEALPITLVDGEIVKTGRYPTNEELA 95 (123)
T ss_dssp HHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H-GGG-SEEEETTEEEEESS---HHHHH
T ss_pred HHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-cCcccCCEEEECCEEEEecCCCCHHHHH
Confidence 567789999999999998877654 345666642 2456899999999776 8877765553
No 180
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=69.08 E-value=31 Score=28.53 Aligned_cols=62 Identities=11% Similarity=-0.076 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE--eCCEE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILK----GL-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF--VGKKY 322 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF--VdGe~ 322 (423)
...|||++. .++|+-|+ +...|+ .+ ++.|-.+|++... ...++.+.++ -..+|.++ -+|+.
T Consensus 15 ~k~vvv~F~------a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~~~~~----V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 15 GRLVVLEFA------LKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELCRREK----IIEVPHFLFYKDGEK 83 (103)
T ss_pred CCEEEEEEE------CCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHHHHcC----CCcCCEEEEEeCCeE
Confidence 456777764 47998776 444443 43 4667777775332 1234444443 34678544 47764
Q ss_pred E
Q 045109 323 I 323 (423)
Q Consensus 323 I 323 (423)
+
T Consensus 84 v 84 (103)
T cd02985 84 I 84 (103)
T ss_pred E
Confidence 3
No 181
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.79 E-value=21 Score=35.45 Aligned_cols=72 Identities=15% Similarity=0.066 Sum_probs=53.2
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHH
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEI 329 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV 329 (423)
++.|.|| .--+||+.. ++-.|+.+||+|+.++++... +.++--.+.- -...||.+-.||+-|+-.-.+
T Consensus 7 ~~~vrL~-------~~w~sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~np--~hkKVPvL~Hn~k~i~ESlii 75 (231)
T KOG0406|consen 7 DGTVKLL-------GMWFSPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKNP--VHKKVPVLEHNGKPICESLII 75 (231)
T ss_pred CCeEEEE-------EeecChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhcc--ccccCCEEEECCceehhhHHH
Confidence 4779999 445799976 999999999999999886432 4454333331 245899999999998877666
Q ss_pred HHHH
Q 045109 330 RRMH 333 (423)
Q Consensus 330 ~~Lh 333 (423)
.+..
T Consensus 76 veYi 79 (231)
T KOG0406|consen 76 VEYI 79 (231)
T ss_pred HHHH
Confidence 5543
No 182
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=68.77 E-value=27 Score=30.83 Aligned_cols=60 Identities=15% Similarity=0.317 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeCCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILK----GLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVGKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVdGe 321 (423)
.+.|||++ ..+||+-|+ +.-+|+ .+. +.|..+|++..+ +|.+.++ -..+|.+ |-+|+
T Consensus 14 ~~~vVV~F------~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~----~la~~~~----V~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRF------GRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP----DFNKMYE----LYDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEE------ECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH----HHHHHcC----CCCCCEEEEEECCE
Confidence 44577765 468998766 555553 332 567888887543 5555554 3468865 45887
Q ss_pred EEc
Q 045109 322 YIG 324 (423)
Q Consensus 322 ~IG 324 (423)
.++
T Consensus 80 ~v~ 82 (114)
T cd02954 80 HMK 82 (114)
T ss_pred EEE
Confidence 764
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=68.56 E-value=4.4 Score=45.34 Aligned_cols=46 Identities=30% Similarity=0.635 Sum_probs=34.2
Q ss_pred CccccccCccceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCC-cccCCCCC
Q 045109 356 VGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENG-LTRCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENG-LirCp~C~ 422 (423)
.-.|..||-. +-|+.|+++-..... ...++|..|+-.- -.+||.|-
T Consensus 383 ~l~C~~Cg~~--~~C~~C~~~L~~h~~-------------------~~~l~Ch~CG~~~~p~~Cp~Cg 429 (665)
T PRK14873 383 SLACARCRTP--ARCRHCTGPLGLPSA-------------------GGTPRCRWCGRAAPDWRCPRCG 429 (665)
T ss_pred eeEhhhCcCe--eECCCCCCceeEecC-------------------CCeeECCCCcCCCcCccCCCCc
Confidence 4579999965 899999999664322 1378999997643 45899994
No 184
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.80 E-value=3.8 Score=47.58 Aligned_cols=23 Identities=48% Similarity=0.972 Sum_probs=18.9
Q ss_pred CccccccCccce------------EeCCCCCCcce
Q 045109 356 VGACEACGDVRF------------VPCETCSGSCK 378 (423)
Q Consensus 356 ~~~C~~CGG~rf------------VpC~~C~GS~K 378 (423)
.+.|+.|.|.++ ++|+.|+|.+.
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 577999999885 47999999854
No 185
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=67.52 E-value=14 Score=33.56 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCcHHH-HHHHHHhCCCcEEEEECCCCh--h-hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 268 YEDCCH-VRVILKGLGVRVDERDLSMHS--G-FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 268 ~c~Cc~-VK~LL~~~gV~yeErDVsmd~--~-~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.++++. |+-+|..+||.|+.+.++... . ...++.+. ....+||.+.++|..|-....|.+.
T Consensus 7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~----nP~g~vP~L~~~g~~l~ES~aI~~y 71 (210)
T TIGR01262 7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLAL----NPQGLVPTLDIDGEVLTQSLAIIEY 71 (210)
T ss_pred CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhc----CCCCcCCEEEECCEEeecHHHHHHH
Confidence 356665 899999999999998887421 1 12344432 2345899999999888888777663
No 186
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=67.27 E-value=18 Score=35.67 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=44.1
Q ss_pred CCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 268 YEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 268 ~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.|+++. |+-+|+.+||.|+.+.|++.. ...++.++ .....||.+..+|..|.....|.+.
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~i----NP~GkVPvL~~d~~~L~ES~aI~~Y 132 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKI----SPEGKVPVVKLDEKWVADSDVITQA 132 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhh----CCCCCCCEEEECCEEEecHHHHHHH
Confidence 499877 899999999999988886542 12334332 2245899999999888877776664
No 187
>PRK15113 glutathione S-transferase; Provisional
Probab=67.13 E-value=24 Score=32.67 Aligned_cols=71 Identities=10% Similarity=0.183 Sum_probs=47.5
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEeCCEEEcchHH
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFVGKKYIGGAEE 328 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDE 328 (423)
..++||.+ ....++++. |+-+|...||.|+.+.++.... ...++.++ .....||.+-++|.-|--..-
T Consensus 4 ~~~~Ly~~-----~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~----nP~g~VP~L~~~~~~l~ES~a 74 (214)
T PRK15113 4 PAITLYSD-----AHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGY----SLTRRVPTLQHDDFELSESSA 74 (214)
T ss_pred CeEEEEeC-----CCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhc----CCCCCCCEEEECCEEEecHHH
Confidence 34678832 123577776 7899999999999888764321 12344443 223589999999887766666
Q ss_pred HHH
Q 045109 329 IRR 331 (423)
Q Consensus 329 V~~ 331 (423)
|.+
T Consensus 75 I~~ 77 (214)
T PRK15113 75 IAE 77 (214)
T ss_pred HHH
Confidence 655
No 188
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=66.94 E-value=43 Score=25.69 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HH----HHHHhC----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VR----VILKGL----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK----~LL~~~----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
.+.++|+++ ..+|+.|. +. .+.+.+ ++.+...|.+. ..++.+.++ -..+|.+++
T Consensus 15 ~~~~~v~f~------~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~----i~~~Pt~~~ 77 (101)
T cd02961 15 SKDVLVEFY------APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----NNDLCSEYG----VRGYPTIKL 77 (101)
T ss_pred CCcEEEEEE------CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----hHHHHHhCC----CCCCCEEEE
Confidence 336777765 36898776 33 333344 35555555543 234555544 357897754
No 189
>PLN02395 glutathione S-transferase
Probab=66.62 E-value=30 Score=31.65 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHhCCCcEEEEECCCCh-hh-HHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 267 TYEDCCHVRVILKGLGVRVDERDLSMHS-GF-KNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 267 T~c~Cc~VK~LL~~~gV~yeErDVsmd~-~~-reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
+++...+|+-+|..+|+.|+.+.++... +. ..++.+.- ...+||.+-.+|..|-....|.+..
T Consensus 9 ~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n----P~g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 9 AFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ----PFGVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred CcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC----CCCCCCEEEECCEEEEcHHHHHHHH
Confidence 3444566899999999999998876432 12 24555532 2358999999998888887777743
No 190
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=66.40 E-value=37 Score=26.88 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred cHHHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 270 DCCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 270 ~Cc~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.+..++-+|+..|+.|+.+.+++..++. ++... .......||.+-+||..|....-+.+.
T Consensus 12 ~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~--~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 12 RMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKD--GSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred hHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccc--cCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 3446899999999999988776432211 11110 011235899999999888777766553
No 191
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=66.27 E-value=32 Score=27.85 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCCCCCCcHHH-HH----HHHHhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-VR----VILKGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-VK----~LL~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
++|++ -.++|+.|+ +. ++-+.+. +.+-..|++. +...++...++ ...+|.+++
T Consensus 21 ~lv~f------~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~~~~~~~~~~~----i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEF------YAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--DKNKPLCGKYG----VQGFPTLKV 80 (109)
T ss_pred EEEEE------ECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--cccHHHHHHcC----CCcCCEEEE
Confidence 66665 347999776 33 3333332 4555566653 11234544443 357898765
No 192
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=66.05 E-value=43 Score=26.83 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhCCCcEEEEECCCChhh---HHHHHHHHc-CCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 270 DCCHVRVILKGLGVRVDERDLSMHSGF---KNELKELLG-DGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 270 ~Cc~VK~LL~~~gV~yeErDVsmd~~~---reEL~~lLg-~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.|..++-+|+..||.|+.+.+++.... ..+...... ......+||.+..+|..|.-..-|++.
T Consensus 11 ~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 11 LAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred ccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 455689999999999998888764311 122221111 011345999999999887766666553
No 193
>PRK05580 primosome assembly protein PriA; Validated
Probab=65.83 E-value=4.7 Score=44.92 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=33.7
Q ss_pred CccccccCccceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCC--cccCCCCC
Q 045109 356 VGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENG--LTRCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENG--LirCp~C~ 422 (423)
...|..||-. +.|+.|+++-..... ...++|..|+-.- -.+||.|.
T Consensus 381 ~~~C~~Cg~~--~~C~~C~~~l~~h~~-------------------~~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 381 FLLCRDCGWV--AECPHCDASLTLHRF-------------------QRRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred ceEhhhCcCc--cCCCCCCCceeEECC-------------------CCeEECCCCcCCCCCCCCCCCCc
Confidence 4579999965 789999998543322 1378999998764 35799993
No 194
>PLN02473 glutathione S-transferase
Probab=65.69 E-value=29 Score=31.79 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=42.8
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCCh--hhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHS--GFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~--~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
..++|+. |+-+|..+||.|+.+.++... ....++.+. . ...+||.+..+|..|.....|.+.
T Consensus 9 ~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~-n---P~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 9 IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLR-Q---PFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhh-C---CCCCCCeEEECCEEEEehHHHHHH
Confidence 4466654 899999999999988765332 123344432 2 235899999999988888877763
No 195
>PTZ00051 thioredoxin; Provisional
Probab=65.50 E-value=42 Score=26.68 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=33.6
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh-----CCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeCCEE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKG-----LGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVGKKY 322 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~-----~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVdGe~ 322 (423)
...|+||+. .++|+.|+ +...|+. .++.+...|++.. .++.+.++ -..+|.+ |-+|+.
T Consensus 18 ~~~vli~f~------~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----~~~~~~~~----v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 18 NELVIVDFY------AEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL----SEVAEKEN----ITSMPTFKVFKNGSV 83 (98)
T ss_pred CCeEEEEEE------CCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch----HHHHHHCC----CceeeEEEEEeCCeE
Confidence 345666653 47898776 5555543 2477777777532 24444444 2466754 447754
Q ss_pred E
Q 045109 323 I 323 (423)
Q Consensus 323 I 323 (423)
+
T Consensus 84 ~ 84 (98)
T PTZ00051 84 V 84 (98)
T ss_pred E
Confidence 4
No 196
>PLN02378 glutathione S-transferase DHAR1
Probab=64.35 E-value=30 Score=32.23 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=43.7
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
..|++|. |+-+|+..|+.|+.+.|++... .+++.+. ....+||.+-.+|..|.-...|.+.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~i----nP~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDI----SPQGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHh----CCCCCCCEEEECCEEecCHHHHHHH
Confidence 3488876 8999999999999888876421 2234332 2346999998899888777766663
No 197
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.14 E-value=18 Score=30.62 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=38.0
Q ss_pred CCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHH------Hc--CCCCCCCCCceEeCC-EEEcchHHHH
Q 045109 266 KTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKEL------LG--DGFSGGGLPRVFVGK-KYIGGAEEIR 330 (423)
Q Consensus 266 KT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~l------Lg--~~tg~~TVPQVFVdG-e~IGGaDEV~ 330 (423)
...||-|. ++..|++.+|.|++++|........++-.+ +. ...|...+|.+.++. +-|=| +++.
T Consensus 9 sn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~ 82 (85)
T COG4545 9 SNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLS 82 (85)
T ss_pred cccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhh
Confidence 34588777 999999999999999985332222221111 00 012345789988755 44433 4443
No 198
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=63.77 E-value=25 Score=31.29 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=32.9
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHH----HhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE-e--CC
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVIL----KGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF-V--GK 320 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL----~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF-V--dG 320 (423)
...||||+. .+||+.|. +...| +.++ +.|..+|++.. ...++.+.++ ...+|.++ + +|
T Consensus 20 gk~vvV~F~------A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~~~~----V~~iPt~v~~~~~G 87 (142)
T cd02950 20 GKPTLVEFY------ADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEIDRYR----VDGIPHFVFLDREG 87 (142)
T ss_pred CCEEEEEEE------CCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHHHcC----CCCCCEEEEECCCC
Confidence 445777764 57999886 33333 3443 55666676522 1123333333 45788765 4 46
Q ss_pred EEE
Q 045109 321 KYI 323 (423)
Q Consensus 321 e~I 323 (423)
+.+
T Consensus 88 ~~v 90 (142)
T cd02950 88 NEE 90 (142)
T ss_pred CEE
Confidence 433
No 199
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=63.71 E-value=24 Score=31.14 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=35.8
Q ss_pred CcEEEEE-eCCCCCCCCCCcHHH-----HHHHHHhCC--CcEEEEECCCChhhH---HHHHHHHcCCCCCC-CCCceEe
Q 045109 252 EKLVVYF-TSLRGIRKTYEDCCH-----VRVILKGLG--VRVDERDLSMHSGFK---NELKELLGDGFSGG-GLPRVFV 318 (423)
Q Consensus 252 ~kVVIYt-TSLrGIRKT~c~Cc~-----VK~LL~~~g--V~yeErDVsmd~~~r---eEL~~lLg~~tg~~-TVPQVFV 318 (423)
..|+|++ +++-....+||+-|+ +.++...+. +.|..+|++.....+ .+++...+ -. .+|.+.+
T Consensus 22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~----I~~~iPT~~~ 96 (119)
T cd02952 22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK----LTTGVPTLLR 96 (119)
T ss_pred CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC----cccCCCEEEE
Confidence 4555544 444445668998665 356666664 788888886332111 24444332 23 6887765
No 200
>PRK14291 chaperone protein DnaJ; Provisional
Probab=62.90 E-value=6.3 Score=40.91 Aligned_cols=23 Identities=30% Similarity=0.764 Sum_probs=17.8
Q ss_pred CccccccCccceE-----------eCCCCCCcce
Q 045109 356 VGACEACGDVRFV-----------PCETCSGSCK 378 (423)
Q Consensus 356 ~~~C~~CGG~rfV-----------pC~~C~GS~K 378 (423)
...|..|.|.+.+ +|..|+|.-.
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 206 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV 206 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceE
Confidence 3569999988765 7888888873
No 201
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=62.84 E-value=29 Score=30.74 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=35.6
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-H-HHHHHh------C--CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-V-RVILKG------L--GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV-- 318 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-V-K~LL~~------~--gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV-- 318 (423)
..+|+|++ ...+|+.|+ + +.+|.. + +..+...|++..++..+.+.+++....+...+|.+.+
T Consensus 15 ~KpVll~f------~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~ 88 (124)
T cd02955 15 DKPIFLSI------GYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLT 88 (124)
T ss_pred CCeEEEEE------ccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 45588875 458999887 4 323332 2 3344556665444444434443322333456776554
Q ss_pred -CCEEE
Q 045109 319 -GKKYI 323 (423)
Q Consensus 319 -dGe~I 323 (423)
+|+.|
T Consensus 89 ~~G~~~ 94 (124)
T cd02955 89 PDLKPF 94 (124)
T ss_pred CCCCEE
Confidence 56666
No 202
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=61.95 E-value=5.2 Score=44.57 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=17.2
Q ss_pred CccccccCccceE----eCCCCCCcceeccc
Q 045109 356 VGACEACGDVRFV----PCETCSGSCKIYYE 382 (423)
Q Consensus 356 ~~~C~~CGG~rfV----pC~~C~GS~Kv~~~ 382 (423)
...|.-|.|.+-| .|+.|.|.-|++.-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c 83 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTC 83 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEee
Confidence 3467777765544 57777777776653
No 203
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=61.93 E-value=39 Score=28.37 Aligned_cols=59 Identities=17% Similarity=0.381 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-H----HHHHHhC---CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE--eCC
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-V----RVILKGL---GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF--VGK 320 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-V----K~LL~~~---gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF--VdG 320 (423)
...|+|++. .++|+-|. + .++.+.+ ++.+-.+|++... ++...++ ..++|.++ .+|
T Consensus 24 ~~~vlV~F~------a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~----~l~~~~~----V~~~Pt~~i~~~g 89 (111)
T cd02963 24 KKPYLIKIT------SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER----RLARKLG----AHSVPAIVGIING 89 (111)
T ss_pred CCeEEEEEE------CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH----HHHHHcC----CccCCEEEEEECC
Confidence 456666654 58999886 2 3333443 5777777776432 3444443 45788765 577
Q ss_pred EEE
Q 045109 321 KYI 323 (423)
Q Consensus 321 e~I 323 (423)
+.+
T Consensus 90 ~~~ 92 (111)
T cd02963 90 QVT 92 (111)
T ss_pred EEE
Confidence 654
No 204
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=61.39 E-value=5.3 Score=38.27 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=25.0
Q ss_pred ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 366 RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 366 rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
|-..|+.|+|+-+++.. ..+|+.|+-.|.++
T Consensus 98 ~~~~C~~C~G~G~~i~~---------------------~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 98 NSCKCPRCRGTGLIQRR---------------------QRECDTCAGTGRFR 128 (186)
T ss_pred cCCcCCCCCCeeEEecC---------------------CCCCCCCCCccEEe
Confidence 38899999999888763 13799999998764
No 205
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=60.41 E-value=36 Score=31.59 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=35.1
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHH----HhC-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCc--eEeCCEEEc
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVIL----KGL-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPR--VFVGKKYIG 324 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL----~~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQ--VFVdGe~IG 324 (423)
.|||++ ..++|+-|. +..+| ..+ .|.|..+|++.. ++...++ -.++|. ||.+|+.|+
T Consensus 85 ~VVV~F------ya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~----v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 85 TVVVHI------YEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFD----TDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEE------ECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCC----CCCCCEEEEEECCEEEE
Confidence 688875 457898665 44344 444 467777777521 4555443 357885 556998765
No 206
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=59.27 E-value=81 Score=25.74 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 269 EDCCHVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 269 c~Cc~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
..|.++.-+|+..|+.|+.+++... +. ......||.|-+||+.|+...-+....
T Consensus 18 ~~~~kv~~~L~elglpye~~~~~~~-~~----------~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 18 ASCLAVQTFLKMCNLPFNVRCRANA-EF----------MSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCHHHHHHHHHHcCCCcEEEecCCc-cc----------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 3345689999999999998865321 10 111258999999999999988887643
No 207
>PRK10996 thioredoxin 2; Provisional
Probab=59.07 E-value=62 Score=28.51 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC--CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe--CCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILK----GL--GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV--GKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~--gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV--dGe 321 (423)
...|+||++ .++|+.|. +..+|. .+ ++.+-..|++.. .++.+.++ ..++|.+++ +|+
T Consensus 52 ~k~vvv~F~------a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~----~~l~~~~~----V~~~Ptlii~~~G~ 117 (139)
T PRK10996 52 DLPVVIDFW------APWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE----RELSARFR----IRSIPTIMIFKNGQ 117 (139)
T ss_pred CCeEEEEEE------CCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC----HHHHHhcC----CCccCEEEEEECCE
Confidence 445666654 48999776 433443 33 355666676543 34555544 346786654 787
Q ss_pred EE
Q 045109 322 YI 323 (423)
Q Consensus 322 ~I 323 (423)
.+
T Consensus 118 ~v 119 (139)
T PRK10996 118 VV 119 (139)
T ss_pred EE
Confidence 54
No 208
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=57.97 E-value=35 Score=29.43 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh------CCCcEEEEECCCCh
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKG------LGVRVDERDLSMHS 294 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~------~gV~yeErDVsmd~ 294 (423)
...|+|++ ..++|+.|+ +...+.. ....|..+|++.+.
T Consensus 19 ~kpVlV~F------~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~ 63 (117)
T cd02959 19 GKPLMLLI------HKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE 63 (117)
T ss_pred CCcEEEEE------eCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC
Confidence 44577765 458999776 4444433 34567788887543
No 209
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=57.94 E-value=7.3 Score=34.53 Aligned_cols=23 Identities=30% Similarity=0.679 Sum_probs=18.0
Q ss_pred ccccccCccceEeCCCCCCccee
Q 045109 357 GACEACGDVRFVPCETCSGSCKI 379 (423)
Q Consensus 357 ~~C~~CGG~rfVpC~~C~GS~Kv 379 (423)
..|..|.|.+.++|..|+|+..+
T Consensus 76 ~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 76 SKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred EECCCCCCcceeeCCCCCCCEEE
Confidence 35888888888888888888544
No 210
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=57.44 E-value=11 Score=46.94 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=34.3
Q ss_pred EEEcchHHHHHHHHcCchHHHHcccccccCCCCCCCccccccCccce------------EeCCCCCCcce
Q 045109 321 KYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGRGNVGACEACGDVRF------------VPCETCSGSCK 378 (423)
Q Consensus 321 e~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG~rf------------VpC~~C~GS~K 378 (423)
.|+|=+|++++|...=...+.-. +.+-.=.-....+.|+.|.|.+. ++|+.|+|.+.
T Consensus 1573 TY~g~fd~IR~lFA~~~~ak~rg-~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1573 TYFDIAPSLRNFYASLTQAKALN-ISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred hhhhhHHHHHHHHhcCHHHHHcC-CCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 45566788888876544443332 22100001113577999999875 58999999865
No 211
>PTZ00057 glutathione s-transferase; Provisional
Probab=57.43 E-value=80 Score=29.09 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCCCCCCcHH-HHHHHHHhCCCcEEEEECCCChhhHHHHHHHHc-CCCCCCCCCceEeCCEEEcchHHHH
Q 045109 253 KLVVYFTSLRGIRKTYEDCC-HVRVILKGLGVRVDERDLSMHSGFKNELKELLG-DGFSGGGLPRVFVGKKYIGGAEEIR 330 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc-~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg-~~tg~~TVPQVFVdGe~IGGaDEV~ 330 (423)
+++||+..+ -.++ .|+-+|+..||.|+.+.+....+.-.+..+... .......||.+.+||..|.-..-+.
T Consensus 4 ~~~L~y~~~-------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 4 EIVLYYFDA-------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred ceEEEecCC-------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHH
Confidence 467775332 2333 489999999999999877432110001111111 1234569999999998888777776
Q ss_pred H
Q 045109 331 R 331 (423)
Q Consensus 331 ~ 331 (423)
+
T Consensus 77 ~ 77 (205)
T PTZ00057 77 R 77 (205)
T ss_pred H
Confidence 6
No 212
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=57.24 E-value=30 Score=33.54 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=15.2
Q ss_pred CCCCceEe-CCEEEcchHHHH
Q 045109 311 GGLPRVFV-GKKYIGGAEEIR 330 (423)
Q Consensus 311 ~TVPQVFV-dGe~IGGaDEV~ 330 (423)
...|.+++ ||+.|.|+-...
T Consensus 201 ~gTPtiv~~~G~~~~G~~~~~ 221 (232)
T PRK10877 201 QGTPAIVLSNGTLVPGYQGPK 221 (232)
T ss_pred ccccEEEEcCCeEeeCCCCHH
Confidence 45799888 999999975443
No 213
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=56.41 E-value=42 Score=34.27 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=48.8
Q ss_pred hcCCCcEEEEEeCCCCCCC--CCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEc
Q 045109 248 KCGKEKLVVYFTSLRGIRK--TYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIG 324 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRK--T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IG 324 (423)
-...+-|-||.=. -... ..-|+|. |..+|+.++|+|+..+-++- ..+...++|=|=+||++|-
T Consensus 40 d~kkD~VYLyQF~--R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~------------~rSr~G~lPFIELNGe~ia 105 (281)
T KOG4244|consen 40 DYKKDTVYLYQFP--RTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK------------RRSRNGTLPFIELNGEHIA 105 (281)
T ss_pred ccccCeEEEEecc--ccCCCCCCChHHHHHHHHHHHhCCCceeccccce------------eeccCCCcceEEeCCeecc
Confidence 3445666666432 1111 2246676 99999999999999987541 1234569999999999999
Q ss_pred chHHHHH
Q 045109 325 GAEEIRR 331 (423)
Q Consensus 325 GaDEV~~ 331 (423)
+.+.+..
T Consensus 106 DS~~I~~ 112 (281)
T KOG4244|consen 106 DSDLIED 112 (281)
T ss_pred ccHHHHH
Confidence 9988754
No 214
>PF13728 TraF: F plasmid transfer operon protein
Probab=56.20 E-value=32 Score=33.09 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=43.6
Q ss_pred hhHHHhhhcCCCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhCCCcEEEEECCCC--hhh-----HHHHHHHHcCCC
Q 045109 241 NGAVLDHKCGKEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGLGVRVDERDLSMH--SGF-----KNELKELLGDGF 308 (423)
Q Consensus 241 ~~~~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~gV~yeErDVsmd--~~~-----reEL~~lLg~~t 308 (423)
....|..+-+...+++|+ +..|++|. ++.+-+.+|+.+..++++-. +.+ -.++.+.++
T Consensus 111 ~~~~l~~la~~~gL~~F~-------~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~--- 180 (215)
T PF13728_consen 111 RDKALKQLAQKYGLFFFY-------RSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG--- 180 (215)
T ss_pred HHHHHHHHhhCeEEEEEE-------cCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC---
Confidence 455666676777777773 44699986 46677789998888877511 011 134555565
Q ss_pred CCCCCCceEe
Q 045109 309 SGGGLPRVFV 318 (423)
Q Consensus 309 g~~TVPQVFV 318 (423)
..++|.+|+
T Consensus 181 -v~~~Pal~L 189 (215)
T PF13728_consen 181 -VKVTPALFL 189 (215)
T ss_pred -CCcCCEEEE
Confidence 358999986
No 215
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=56.09 E-value=72 Score=31.69 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=58.8
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcch
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGA 326 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGa 326 (423)
+-+.++=|.|.-.. ++..++.+|-. ++..|..+|+.+.+.+++. .-.+++...|.+. +.-||||-
T Consensus 28 l~g~~~~i~FIPtA-s~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~--~~~~~Ie~~l~~~-----------d~IyVgGG 93 (224)
T COG3340 28 LQGKRKTIAFIPTA-SVDSEDDFYVEKVRNALAKLGLEVSELHLSK--PPLAAIENKLMKA-----------DIIYVGGG 93 (224)
T ss_pred hcCCCceEEEEecC-ccccchHHHHHHHHHHHHHcCCeeeeeeccC--CCHHHHHHhhhhc-----------cEEEECCc
Confidence 33445555664443 33556666765 8999999999999999874 3467888877642 55777776
Q ss_pred HH---HHHHHHcCchHHHHcccc
Q 045109 327 EE---IRRMHEEGQLEKVVEGCE 346 (423)
Q Consensus 327 DE---V~~LhEsGeL~kLL~~~~ 346 (423)
+. ++.|.|.|-+.-|.+.+.
T Consensus 94 NTF~LL~~lke~gld~iIr~~vk 116 (224)
T COG3340 94 NTFNLLQELKETGLDDIIRERVK 116 (224)
T ss_pred hHHHHHHHHHHhCcHHHHHHHHH
Confidence 55 566788888877777654
No 216
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=54.76 E-value=12 Score=26.64 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=21.2
Q ss_pred eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCC
Q 045109 367 FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNE 412 (423)
Q Consensus 367 fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNE 412 (423)
.+-|+.|+...++-.+.- ....+.+||+.|..
T Consensus 2 ~i~CP~C~~~f~v~~~~l--------------~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKL--------------PAGGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHHc--------------ccCCcEEECCCCCc
Confidence 367999999887644310 12345889999975
No 217
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=54.03 E-value=8.6 Score=26.85 Aligned_cols=9 Identities=33% Similarity=1.276 Sum_probs=6.5
Q ss_pred eeeCCCCCC
Q 045109 404 FQRCPDCNE 412 (423)
Q Consensus 404 ~~RC~~CNE 412 (423)
..+||.|..
T Consensus 26 ~~~CP~Cg~ 34 (41)
T smart00834 26 LATCPECGG 34 (41)
T ss_pred CCCCCCCCC
Confidence 457888876
No 218
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=53.89 E-value=93 Score=28.80 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhCCCcEEEEE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGLGVRVDERD 289 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~gV~yeErD 289 (423)
.+.+|||+. .++|+.|. +.++-+.+++.+.-+.
T Consensus 74 gk~vvl~F~------atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 74 GRPTLLMFT------APSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred CCEEEEEEE------CCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 345777764 48999886 3444555666655444
No 219
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=53.39 E-value=1.1e+02 Score=24.02 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCcEEEEECCCChhh--HHHHHHHHcCCCCCCCCCceEeC-CEEEcchHHHHH
Q 045109 271 CCHVRVILKGLGVRVDERDLSMHSGF--KNELKELLGDGFSGGGLPRVFVG-KKYIGGAEEIRR 331 (423)
Q Consensus 271 Cc~VK~LL~~~gV~yeErDVsmd~~~--reEL~~lLg~~tg~~TVPQVFVd-Ge~IGGaDEV~~ 331 (423)
+..++-+|+..||.|+.+-+++.... .+++.+.-.. . ..||.+-++ |..|-..-.|.+
T Consensus 12 ~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~-~--g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 12 SERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPM-F--GKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp THHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTT-S--SSSSEEEETTTEEEESHHHHHH
T ss_pred hHHHHHHHHHhcccCceEEEecccccccchhhhhcccc-c--ceeeEEEECCCCEEEcHHHHHH
Confidence 44589999999999998887753322 2565554321 0 489999999 988877766654
No 220
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=52.14 E-value=95 Score=24.48 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh------CCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCc--eEeCCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKG------LGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPR--VFVGKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~------~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQ--VFVdGe 321 (423)
...|+|++ -.++|.-|. +...|+. ..+.+...|.+.. .++.+.++ -..+|. +|.+|+
T Consensus 14 ~~~v~v~f------~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~----~~~~~~~~----i~~~Pt~~~~~~g~ 79 (97)
T cd02984 14 SKLLVLHF------WAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL----PEISEKFE----ITAVPTFVFFRNGT 79 (97)
T ss_pred CCEEEEEE------ECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC----HHHHHhcC----CccccEEEEEECCE
Confidence 35666665 358998776 5555543 2455666665422 34555554 346884 455776
Q ss_pred EE
Q 045109 322 YI 323 (423)
Q Consensus 322 ~I 323 (423)
-+
T Consensus 80 ~~ 81 (97)
T cd02984 80 IV 81 (97)
T ss_pred EE
Confidence 43
No 221
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=52.12 E-value=11 Score=39.76 Aligned_cols=78 Identities=22% Similarity=0.412 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCCCCCCCceEe-------------CCEEEcchHHHHHHHHcCchHHHHcccccccCCCCCCCccccccCc
Q 045109 298 NELKELLGDGFSGGGLPRVFV-------------GKKYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGRGNVGACEACGD 364 (423)
Q Consensus 298 eEL~~lLg~~tg~~TVPQVFV-------------dGe~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG 364 (423)
.|+.++|+. +++.|.=|. +|+||- --.|+.++|+.||.++=.
T Consensus 40 ~eIakAL~R---Pp~Y~tKyFGcELGAQT~fd~kn~ryiV-----NG~Hd~~KLqdlLdgFIk----------------- 94 (400)
T KOG2767|consen 40 VEIAKALGR---PPLYPTKYFGCELGAQTKFDVKNGRYIV-----NGAHEASKLQDLLDGFIK----------------- 94 (400)
T ss_pred HHHHHHhCC---CCCcccccceeeccccccccccCCeeee-----cccccHHHHHHHHHHHHH-----------------
Confidence 377778775 345555444 455542 124788999999998653
Q ss_pred cceEeCCCCCCcce-eccccchhhhcccCCCCccccCccceeeCCCCCCCCccc
Q 045109 365 VRFVPCETCSGSCK-IYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLTR 417 (423)
Q Consensus 365 ~rfVpC~~C~GS~K-v~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLir 417 (423)
+||+|..|.-.-- +++.. .+...+.|-+|.--|.+.
T Consensus 95 -KFVlC~~C~NPETel~itk----------------~q~i~~~CkACG~r~~~d 131 (400)
T KOG2767|consen 95 -KFVLCPSCENPETELIITK----------------KQTISLKCKACGFRSDMD 131 (400)
T ss_pred -HheeCcCCCCCceeEEecc----------------cchhhhHHHHcCCccccc
Confidence 7899999977632 22221 123457899998777654
No 222
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=51.41 E-value=1.2e+02 Score=24.05 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 261 LRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 261 LrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
..|+. +..+.|- +..+|+-.|+.|+....+ +.. .+....+|.|-.+|+.|++.+.+.+..
T Consensus 9 ~~g~p-s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-----------~sp~gkLP~l~~~~~~i~d~~~Ii~~L 69 (73)
T cd03078 9 DWGLP-SVDPECLAVLAYLKFAGAPLKVVPSN-NPW-----------RSPTGKLPALLTSGTKISGPEKIIEYL 69 (73)
T ss_pred CCCCC-cCCHHHHHHHHHHHcCCCCEEEEecC-CCC-----------CCCCCccCEEEECCEEecChHHHHHHH
Confidence 34543 4557665 899999999999765432 110 122357999999999999999988743
No 223
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=50.34 E-value=85 Score=25.72 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHH----h----C----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe-
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILK----G----L----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV- 318 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~----~----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV- 318 (423)
.|+|++. .++|+.|. +...|+ . + .+.+-.+|.+.. .+|.+.++ ..++|.+++
T Consensus 20 ~vlv~F~------a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~----~~l~~~~~----v~~~Ptl~~~ 85 (108)
T cd02996 20 LVLVNFY------ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE----SDIADRYR----INKYPTLKLF 85 (108)
T ss_pred EEEEEEE------CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC----HHHHHhCC----CCcCCEEEEE
Confidence 3555553 57999876 444443 2 1 356667777543 34555554 457897753
Q ss_pred -CCE
Q 045109 319 -GKK 321 (423)
Q Consensus 319 -dGe 321 (423)
+|+
T Consensus 86 ~~g~ 89 (108)
T cd02996 86 RNGM 89 (108)
T ss_pred eCCc
Confidence 554
No 224
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=50.14 E-value=50 Score=32.87 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHhhhcCCCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhCCCcEEEEECCCChh-------hHHHHHHHHcCCCCC
Q 045109 243 AVLDHKCGKEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGLGVRVDERDLSMHSG-------FKNELKELLGDGFSG 310 (423)
Q Consensus 243 ~~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~gV~yeErDVsmd~~-------~reEL~~lLg~~tg~ 310 (423)
..+..+.+. .++||+ -.++|+.|. ++.+-+.+|+.+..++++.... .-..+.+.++ -
T Consensus 159 ~~l~~l~~k-~~Lv~F------~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g----V 227 (271)
T TIGR02740 159 RVMKDLAKK-SGLFFF------FKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK----I 227 (271)
T ss_pred HHHHHhcCC-eEEEEE------ECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC----C
Confidence 334444444 455554 457899886 3556667888777777653210 0123445554 4
Q ss_pred CCCCceEe
Q 045109 311 GGLPRVFV 318 (423)
Q Consensus 311 ~TVPQVFV 318 (423)
..+|.+|+
T Consensus 228 ~~vPtl~L 235 (271)
T TIGR02740 228 RTVPAVFL 235 (271)
T ss_pred CcCCeEEE
Confidence 57999875
No 225
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=49.39 E-value=87 Score=24.81 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=32.3
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHH----HhC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVIL----KGL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF 317 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL----~~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF 317 (423)
.+..+.|+|++. .++|+.|+ +...| +.+ .+.+-..|.+.+. ++.+.++ ...+|.++
T Consensus 13 ~~~~~~~lv~f~------a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~----v~~~Pt~~ 78 (102)
T cd03005 13 HIAEGNHFVKFF------APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR----ELCSEFQ----VRGYPTLL 78 (102)
T ss_pred HhhcCCEEEEEE------CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh----hhHhhcC----CCcCCEEE
Confidence 344556777754 57998776 32222 333 3556666665332 3433333 35789755
Q ss_pred --eCCE
Q 045109 318 --VGKK 321 (423)
Q Consensus 318 --VdGe 321 (423)
-+|+
T Consensus 79 ~~~~g~ 84 (102)
T cd03005 79 LFKDGE 84 (102)
T ss_pred EEeCCC
Confidence 3554
No 226
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=49.38 E-value=78 Score=25.08 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-H----HHHHHhC----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE--eCC
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-V----RVILKGL----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF--VGK 320 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-V----K~LL~~~----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF--VdG 320 (423)
..++|+++ .++|+.|+ + ..+.+.+ .+.+-..|.+.+ .-.++...++ -..+|.++ -+|
T Consensus 18 ~~~~v~f~------a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~----i~~~Pt~~~~~~g 85 (104)
T cd02997 18 KHVLVMFY------APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYN----VKGFPTFKYFENG 85 (104)
T ss_pred CCEEEEEE------CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCC----CccccEEEEEeCC
Confidence 35555553 47999876 2 2333333 255666676542 2235555554 34678764 345
Q ss_pred E
Q 045109 321 K 321 (423)
Q Consensus 321 e 321 (423)
+
T Consensus 86 ~ 86 (104)
T cd02997 86 K 86 (104)
T ss_pred C
Confidence 4
No 227
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=49.05 E-value=49 Score=25.19 Aligned_cols=16 Identities=38% Similarity=0.572 Sum_probs=12.1
Q ss_pred CCCCCCceEeCC-EEEc
Q 045109 309 SGGGLPRVFVGK-KYIG 324 (423)
Q Consensus 309 g~~TVPQVFVdG-e~IG 324 (423)
|...+|.++|+| .+.|
T Consensus 80 g~~g~Pt~v~~~~~~~~ 96 (98)
T cd02972 80 GVTGTPTFVVNGEKYSG 96 (98)
T ss_pred CCCCCCEEEECCEEcCC
Confidence 446789999999 5554
No 228
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=49.04 E-value=12 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=14.7
Q ss_pred CccccccCccc-eEeCCCCCCcc
Q 045109 356 VGACEACGDVR-FVPCETCSGSC 377 (423)
Q Consensus 356 ~~~C~~CGG~r-fVpC~~C~GS~ 377 (423)
...|..||..- ..-|+.|..+.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~t 689 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHT 689 (1337)
T ss_pred EEECCCCCCccccccCcccCCcC
Confidence 35688888632 24788888774
No 229
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=48.60 E-value=13 Score=26.02 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=19.4
Q ss_pred EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCC
Q 045109 368 VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNE 412 (423)
Q Consensus 368 VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNE 412 (423)
+.|+.|+..-++-.+.- .......+|+.|..
T Consensus 3 ~~CP~C~~~~~v~~~~~--------------~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQL--------------GANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHc--------------CCCCCEEECCCCCC
Confidence 67999998866643310 01123678888865
No 230
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=48.56 E-value=66 Score=25.85 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=26.7
Q ss_pred CCCCCcHHH-HHHHHH-------hCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 265 RKTYEDCCH-VRVILK-------GLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 265 RKT~c~Cc~-VK~LL~-------~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
-.++|+.|. +..+|+ ..+|.+-.+|.+.+. ++...++ ..++|.+++
T Consensus 24 ~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~----~~~~~~~----i~~~Pt~~~ 77 (101)
T cd02994 24 YAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP----GLSGRFF----VTALPTIYH 77 (101)
T ss_pred ECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH----hHHHHcC----CcccCEEEE
Confidence 457999876 444443 234667777775432 3444443 357888775
No 231
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=48.49 E-value=59 Score=26.54 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=31.3
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-H----HHHHHhC---C--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-V----RVILKGL---G--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF 317 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-V----K~LL~~~---g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF 317 (423)
....+.|+|++. .++|+.|+ + .++.+.+ + +.+...|++.. .++.+.++ -.++|.++
T Consensus 12 ~~~~~~vlv~f~------a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~----I~~~Pt~~ 77 (104)
T cd03000 12 VRKEDIWLVDFY------APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY----SSIASEFG----VRGYPTIK 77 (104)
T ss_pred hccCCeEEEEEE------CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC----HhHHhhcC----CccccEEE
Confidence 345567777764 58999776 2 2333333 3 44555665433 24444443 35788875
Q ss_pred e
Q 045109 318 V 318 (423)
Q Consensus 318 V 318 (423)
+
T Consensus 78 l 78 (104)
T cd03000 78 L 78 (104)
T ss_pred E
Confidence 3
No 232
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=47.98 E-value=1.2e+02 Score=24.11 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCCc-EEEEEeCCCCCCCCCCcHHH-HHHHHH----hC--CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 250 GKEK-LVVYFTSLRGIRKTYEDCCH-VRVILK----GL--GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 250 ~~~k-VVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~--gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
..++ |+||+. .++|+.|. +...|. .+ .+.+-..|++.. .++.+.++ ...+|.+++
T Consensus 16 ~~~~~vlv~f~------a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~----i~~~P~~~~ 78 (103)
T cd03001 16 NSDDVWLVEFY------APWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH----QSLAQQYG----VRGFPTIKV 78 (103)
T ss_pred cCCCcEEEEEE------CCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch----HHHHHHCC----CCccCEEEE
Confidence 3344 666653 47898776 443333 33 356667776533 34555554 357897643
No 233
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=47.79 E-value=68 Score=29.58 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=15.5
Q ss_pred CCCCceEe-CCEEEcchHHHHHH
Q 045109 311 GGLPRVFV-GKKYIGGAEEIRRM 332 (423)
Q Consensus 311 ~TVPQVFV-dGe~IGGaDEV~~L 332 (423)
..+|.|++ ||+.+.|+....+|
T Consensus 171 ~gtPtii~~~G~~~~G~~~~~~l 193 (197)
T cd03020 171 NGTPTIVLADGRVVPGAPPAAQL 193 (197)
T ss_pred CcccEEEECCCeEecCCCCHHHH
Confidence 46888888 58888887654443
No 234
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=46.50 E-value=1e+02 Score=24.27 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=28.7
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HH----HHHHhC----CCcEEEEECCC-ChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VR----VILKGL----GVRVDERDLSM-HSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK----~LL~~~----gV~yeErDVsm-d~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
.|+|+++ .++|+.|+ +. .+.+.+ ++.+-..|.+. .. .+.+.++ ..++|.+++
T Consensus 20 ~~~v~f~------a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~----i~~~P~~~~ 81 (105)
T cd02998 20 DVLVEFY------APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYG----VSGFPTLKF 81 (105)
T ss_pred cEEEEEE------CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCC----CCCcCEEEE
Confidence 5666654 36899886 33 333333 35566666654 22 3344343 357898765
No 235
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=46.50 E-value=69 Score=30.54 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=40.5
Q ss_pred EEEEEeCCCCCCCCCCcHHH-----HHHHHHhCCCcEEEEECCCCh---------hhHHHHHHHHcCCCCCCCCCceEe-
Q 045109 254 LVVYFTSLRGIRKTYEDCCH-----VRVILKGLGVRVDERDLSMHS---------GFKNELKELLGDGFSGGGLPRVFV- 318 (423)
Q Consensus 254 VVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~gV~yeErDVsmd~---------~~reEL~~lLg~~tg~~TVPQVFV- 318 (423)
||+| -.++|++|. ++++-+.+++.+.-+.++-.. .-...+.+.++.. ...+|..||
T Consensus 73 lV~F-------waswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~--~~~iPttfLI 143 (181)
T PRK13728 73 VVLF-------MQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNI--PVATPTTFLV 143 (181)
T ss_pred EEEE-------ECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCC--CCCCCeEEEE
Confidence 7777 568999886 478888889887666654221 0123355555421 247899885
Q ss_pred --CCE-----EEcchH
Q 045109 319 --GKK-----YIGGAE 327 (423)
Q Consensus 319 --dGe-----~IGGaD 327 (423)
+|+ ++|..+
T Consensus 144 d~~G~i~~~~~~G~~~ 159 (181)
T PRK13728 144 NVNTLEALPLLQGATD 159 (181)
T ss_pred eCCCcEEEEEEECCCC
Confidence 553 567665
No 236
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=44.92 E-value=77 Score=30.00 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=38.0
Q ss_pred hhHHHhhhcCC---CcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC-CCcEEEEECCCChhhHHHHHHHHcCCCCCC
Q 045109 241 NGAVLDHKCGK---EKLVVYFTSLRGIRKTYEDCCH-VRVILK----GL-GVRVDERDLSMHSGFKNELKELLGDGFSGG 311 (423)
Q Consensus 241 ~~~~v~~li~~---~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~ 311 (423)
.+.+++..... ..|||++ ..++|+-|. +..+|+ .+ .|+|..+|++. ....+ +-.
T Consensus 89 ~~~f~~eV~~as~~~~VVV~F------ya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~~~----~i~ 151 (192)
T cd02988 89 KPDYVREVTEASKDTWVVVHL------YKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIPNY----PDK 151 (192)
T ss_pred HHHHHHHHHhcCCCCEEEEEE------ECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHhhC----CCC
Confidence 34555544433 3477765 457887666 444444 33 37788888741 12223 345
Q ss_pred CCCceE--eCCEEEc
Q 045109 312 GLPRVF--VGKKYIG 324 (423)
Q Consensus 312 TVPQVF--VdGe~IG 324 (423)
.+|.|+ -||+.|+
T Consensus 152 ~lPTlliyk~G~~v~ 166 (192)
T cd02988 152 NLPTILVYRNGDIVK 166 (192)
T ss_pred CCCEEEEEECCEEEE
Confidence 789765 5886543
No 237
>PF15616 TerY-C: TerY-C metal binding domain
Probab=44.90 E-value=19 Score=32.94 Aligned_cols=39 Identities=31% Similarity=0.765 Sum_probs=27.9
Q ss_pred ccccccCcc-ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 357 GACEACGDV-RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 357 ~~C~~CGG~-rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
..|..||.. .|+.| .|+ |++--+. .....||.|..+|-.
T Consensus 78 PgCP~CGn~~~fa~C-~CG---kl~Ci~g-----------------~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCG---KLFCIDG-----------------EGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEe-cCC---CEEEeCC-----------------CCCEECCCCCCeeee
Confidence 349999998 99999 686 5665321 125689999988753
No 238
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=44.48 E-value=91 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=33.5
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHH----HHHhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE--eCCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRV----ILKGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF--VGKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~----LL~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF--VdGe 321 (423)
...|+||+. .++|+-|. +.. +.+.+. +.+-..|++.. .+|.+.++ ...+|.++ -+|+
T Consensus 12 ~~~vlv~f~------a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~l~~~~~----i~~~Pt~~~~~~g~ 77 (96)
T cd02956 12 QVPVVVDFW------APRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ----PQIAQQFG----VQALPTVYLFAAGQ 77 (96)
T ss_pred CCeEEEEEE------CCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC----HHHHHHcC----CCCCCEEEEEeCCE
Confidence 346777754 47898776 333 333443 44556666533 35555554 35788876 4665
Q ss_pred EE
Q 045109 322 YI 323 (423)
Q Consensus 322 ~I 323 (423)
.+
T Consensus 78 ~~ 79 (96)
T cd02956 78 PV 79 (96)
T ss_pred Ee
Confidence 43
No 239
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=44.08 E-value=60 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=12.4
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-H-HHHH
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-V-RVIL 278 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-V-K~LL 278 (423)
..++|||++ .++|++|+ + +.++
T Consensus 5 ~k~~v~~F~------~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 5 GKPIVVVFT------DPWCPYCKKLEKELF 28 (112)
T ss_dssp SSEEEEEEE-------TT-HHHHHHHHHHH
T ss_pred CCEEEEEEE------CCCCHHHHHHHHHHH
Confidence 445566654 47999998 4 4444
No 240
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=44.03 E-value=23 Score=41.50 Aligned_cols=24 Identities=42% Similarity=0.880 Sum_probs=19.2
Q ss_pred CccccccCccce------------EeCCCCCCccee
Q 045109 356 VGACEACGDVRF------------VPCETCSGSCKI 379 (423)
Q Consensus 356 ~~~C~~CGG~rf------------VpC~~C~GS~Kv 379 (423)
.+.|+.|.|.++ ++|+.|+|.+..
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 677999999764 579999998643
No 241
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=42.46 E-value=1.2e+02 Score=26.69 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeCCEEE
Q 045109 274 VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVGKKYI 323 (423)
Q Consensus 274 VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVdGe~I 323 (423)
+.++|+..+|.+-.+|++.+ .+|...++ -.++|.+ |.||+.+
T Consensus 57 aa~~l~~~~v~~~kVD~d~~----~~La~~~~----I~~iPTl~lfk~G~~v 100 (120)
T cd03065 57 AAQVLEDKGIGFGLVDSKKD----AKVAKKLG----LDEEDSIYVFKDDEVI 100 (120)
T ss_pred HHHHhhcCCCEEEEEeCCCC----HHHHHHcC----CccccEEEEEECCEEE
Confidence 45667677899999999755 35655555 3456654 7788755
No 242
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=41.86 E-value=1.7e+02 Score=22.90 Aligned_cols=54 Identities=17% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILK----GL----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
...++|+++ .++|+-|+ +...|. .+ ++.+...|.+.+ .++.+.++ ...+|.+|+
T Consensus 13 ~~~~~i~f~------~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~----i~~~P~~~~ 75 (102)
T TIGR01126 13 NKDVLVEFY------APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE----KDLASRFG----VSGFPTIKF 75 (102)
T ss_pred CCcEEEEEE------CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch----HHHHHhCC----CCcCCEEEE
Confidence 444455544 46898776 333332 22 266667776533 34444443 457998854
No 243
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=41.18 E-value=26 Score=43.72 Aligned_cols=57 Identities=23% Similarity=0.451 Sum_probs=33.3
Q ss_pred EEEcchHHHHHHHHcCchHHHHcccccccCCCCCCCccccccCccce---------EeCCCCCCcce
Q 045109 321 KYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGRGNVGACEACGDVRF---------VPCETCSGSCK 378 (423)
Q Consensus 321 e~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG~rf---------VpC~~C~GS~K 378 (423)
.|+|=+|++++|...=...+... +.+..-.-...++.|+.|.|.+. ++|+.|+|.+.
T Consensus 686 tY~g~fd~IR~lFA~~~~ak~~g-~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 686 TYIKAFDDLRELFAEQPRSKRLG-LTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred eehhhhHHHHHHHhhChHHHHcC-CCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 34555678887765544444222 22110000112567999999874 68999999643
No 244
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=39.56 E-value=24 Score=31.52 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=37.7
Q ss_pred HHHHHHhCCCcEEEEEC-CCChhhHHHHHHHHc--CCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 274 VRVILKGLGVRVDERDL-SMHSGFKNELKELLG--DGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 274 VK~LL~~~gV~yeErDV-smd~~~reEL~~lLg--~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
+..++...|+..++..- ..+.+++++|++-.. ...|...+|.++|||+++=|.+.+..|.
T Consensus 126 l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 126 LAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 67788888875432221 123344555544321 1234568999999999999999887654
No 245
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.36 E-value=27 Score=39.91 Aligned_cols=46 Identities=26% Similarity=0.669 Sum_probs=33.6
Q ss_pred CccccccCccceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCc--ccCCCCC
Q 045109 356 VGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGL--TRCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGL--irCp~C~ 422 (423)
.-.|..||=. .-|+.|..+-- ++.. .+.++|-.|+-..- ..||.|-
T Consensus 435 ~l~C~~Cg~v--~~Cp~Cd~~lt-~H~~------------------~~~L~CH~Cg~~~~~p~~Cp~Cg 482 (730)
T COG1198 435 LLLCRDCGYI--AECPNCDSPLT-LHKA------------------TGQLRCHYCGYQEPIPQSCPECG 482 (730)
T ss_pred eeecccCCCc--ccCCCCCcceE-EecC------------------CCeeEeCCCCCCCCCCCCCCCCC
Confidence 4569999865 68999999943 3321 14799999998744 4799994
No 246
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=39.22 E-value=21 Score=27.22 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=23.7
Q ss_pred CccceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCC
Q 045109 363 GDVRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNEN 413 (423)
Q Consensus 363 GG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNEN 413 (423)
||.-||.|..|.---.+-.. + ...+.....+||..|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~--~----------~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAK--F----------SLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCc--c----------CCCccceeEEeCCCCcee
Confidence 78899999999764332221 0 000122457899999873
No 247
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=41 Score=33.56 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=39.0
Q ss_pred CcEEEEEeCCCCCCCCCCcHHHHHHHHHhCCCc--EEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcc----
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCHVRVILKGLGVR--VDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGG---- 325 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~VK~LL~~~gV~--yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGG---- 325 (423)
=.|-||+ .||.-.|...-+.|++.|.- +...|-+ ......+++ +--++|.||+||+.+-+
T Consensus 11 ~~VkI~~------HktC~ssy~Lf~~L~nkgll~~Vkii~a~--~p~f~~~~~------~V~SvP~Vf~DGel~~~dpVd 76 (265)
T COG5494 11 MEVKIFT------HKTCVSSYMLFEYLENKGLLGKVKIIDAE--LPPFLAFEK------GVISVPSVFIDGELVYADPVD 76 (265)
T ss_pred eEEEEEE------ecchHHHHHHHHHHHhcCCCCCceEEEcC--CChHHHhhc------ceeecceEEEcCeEEEcCCCC
Confidence 3567883 45533444468888887753 4444432 111222222 23489999999988642
Q ss_pred hHHHHHHHH
Q 045109 326 AEEIRRMHE 334 (423)
Q Consensus 326 aDEV~~LhE 334 (423)
.+++..+.+
T Consensus 77 p~~ies~~~ 85 (265)
T COG5494 77 PEEIESILS 85 (265)
T ss_pred HHHHHHHHc
Confidence 455655543
No 248
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=39.02 E-value=16 Score=30.94 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHHhCCCcEEEEECCC-ChhhHHHHHHHH--cCCCCCCCCCceEeCCEEEcchHHHHHHH
Q 045109 274 VRVILKGLGVRVDERDLSM-HSGFKNELKELL--GDGFSGGGLPRVFVGKKYIGGAEEIRRMH 333 (423)
Q Consensus 274 VK~LL~~~gV~yeErDVsm-d~~~reEL~~lL--g~~tg~~TVPQVFVdGe~IGGaDEV~~Lh 333 (423)
+..++..+|+..++.+-.+ +....+.++.-. ....+-..+|.++|+|+.+-|+.....|.
T Consensus 88 l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~ 150 (154)
T cd03023 88 LLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHHH
Confidence 6677788887644322111 122233332211 11234567999999999999988766554
No 249
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=38.84 E-value=22 Score=27.00 Aligned_cols=35 Identities=26% Similarity=0.687 Sum_probs=20.6
Q ss_pred eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCC
Q 045109 367 FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNE 412 (423)
Q Consensus 367 fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNE 412 (423)
..||+.| |+..+.+..... .+ .+.+.+..|..|+-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~-----~~-----~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEG-----FD-----YGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccC-----CC-----CCCEEEEEcCCCCC
Confidence 4689999 887776653110 00 01114688999875
No 250
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=38.34 E-value=24 Score=30.47 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=17.1
Q ss_pred CCCCCceEeCCEEEcchHHHHHH
Q 045109 310 GGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 310 ~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
-..+|.+||||+++.|.-.+.+|
T Consensus 134 i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 134 ITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp -SSSSEEEETTCEEETTTSHHHH
T ss_pred CccccEEEECCEEeCCCCCHHHH
Confidence 45799999999999865555443
No 251
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=37.83 E-value=41 Score=29.87 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHhhhcCCCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhC-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE
Q 045109 244 VLDHKCGKEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGL-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF 317 (423)
Q Consensus 244 ~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF 317 (423)
.+......-.|+|+ ..+||+-|. +.++++.. ++.+..+..+ +..+-+..++. .+.+.+|.+.
T Consensus 35 ~l~~~~~~~~ilvi-------~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd---~~~el~~~~lt--~g~~~IP~~I 102 (129)
T PF14595_consen 35 KLKSIQKPYNILVI-------TETWCGDCARNVPVLAKIAEANPNIEVRIILRD---ENKELMDQYLT--NGGRSIPTFI 102 (129)
T ss_dssp HHHT--S-EEEEEE---------TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH---HHHHHTTTTTT---SS--SSEEE
T ss_pred HHHhcCCCcEEEEE-------ECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec---CChhHHHHHHh--CCCeecCEEE
Confidence 34444455688888 689999876 47788777 5655544332 11222222332 3467899887
Q ss_pred e
Q 045109 318 V 318 (423)
Q Consensus 318 V 318 (423)
|
T Consensus 103 ~ 103 (129)
T PF14595_consen 103 F 103 (129)
T ss_dssp E
T ss_pred E
Confidence 6
No 252
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=37.00 E-value=2.1e+02 Score=23.01 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HHHHH----HhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE--eCCE
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VRVIL----KGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF--VGKK 321 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK~LL----~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF--VdGe 321 (423)
..|+|++. .++|+.|. +..+| +.++ +.+-.+|++.+ .++.+.++ -..+|.++ -+|+
T Consensus 19 ~~~~v~f~------a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~----~~~~~~~~----v~~~Pt~~~~~~g~ 83 (101)
T cd03003 19 EIWFVNFY------SPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD----RMLCRSQG----VNSYPSLYVFPSGM 83 (101)
T ss_pred CeEEEEEE------CCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc----HHHHHHcC----CCccCEEEEEcCCC
Confidence 44666654 47999776 34443 3332 55667777543 23444443 35788874 4564
No 253
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=36.96 E-value=2.1e+02 Score=23.94 Aligned_cols=35 Identities=6% Similarity=0.055 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-H----HHHHHhCCCcEEEEECC
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-V----RVILKGLGVRVDERDLS 291 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-V----K~LL~~~gV~yeErDVs 291 (423)
...||||+. .++|+.|. . .++-+.+++.+..++++
T Consensus 25 gk~vvv~F~------a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 25 GKPYLLNVW------ASWCAPCREEHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred CCEEEEEEE------cCcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 345666654 47899886 2 23333445666555543
No 254
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=36.92 E-value=24 Score=26.28 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=6.3
Q ss_pred eeeCCCCCCC
Q 045109 404 FQRCPDCNEN 413 (423)
Q Consensus 404 ~~RC~~CNEN 413 (423)
..||++|.-.
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 4677777643
No 255
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=36.74 E-value=27 Score=32.00 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.3
Q ss_pred eEeCCCCCCcceeccc
Q 045109 367 FVPCETCSGSCKIYYE 382 (423)
Q Consensus 367 fVpC~~C~GS~Kv~~~ 382 (423)
...|..|.|.+.+.-.
T Consensus 99 ~~~C~~Cgg~rfv~C~ 114 (147)
T cd03031 99 GGVCEGCGGARFVPCS 114 (147)
T ss_pred CCCCCCCCCcCeEECC
Confidence 4469999998777765
No 256
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=36.47 E-value=17 Score=29.21 Aligned_cols=19 Identities=37% Similarity=1.281 Sum_probs=16.4
Q ss_pred eeeCCCCCCCCcc-cCCCCC
Q 045109 404 FQRCPDCNENGLT-RCPICC 422 (423)
Q Consensus 404 ~~RC~~CNENGLi-rCp~C~ 422 (423)
.++|+.|++--|- .||.|-
T Consensus 5 ~rkC~~cg~YTLke~Cp~CG 24 (59)
T COG2260 5 IRKCPKCGRYTLKEKCPVCG 24 (59)
T ss_pred hhcCcCCCceeecccCCCCC
Confidence 5789999999998 999983
No 257
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=36.43 E-value=18 Score=36.15 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=23.8
Q ss_pred CccccccCccceEeCCCCCCcceeccc
Q 045109 356 VGACEACGDVRFVPCETCSGSCKIYYE 382 (423)
Q Consensus 356 ~~~C~~CGG~rfVpC~~C~GS~Kv~~~ 382 (423)
...|....|..+++|+.|.|+-++--+
T Consensus 27 ~~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 27 SFPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred cCccccccCCCCCcCCCCcCCccCCcc
Confidence 456888899999999999999998765
No 258
>PLN02189 cellulose synthase
Probab=36.27 E-value=19 Score=42.60 Aligned_cols=42 Identities=43% Similarity=0.933 Sum_probs=29.6
Q ss_pred CccccccCcc--------ceEeCCCCCCc-ceeccccchhhhcccCCCCccccCccceeeCCCCCC
Q 045109 356 VGACEACGDV--------RFVPCETCSGS-CKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNE 412 (423)
Q Consensus 356 ~~~C~~CGG~--------rfVpC~~C~GS-~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNE 412 (423)
+..|.-||+. -||.|..|.=- ||.-++-+ .+.+-..||.|+-
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye---------------r~eg~q~CpqCkt 84 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE---------------RREGTQNCPQCKT 84 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhh---------------hhcCCccCcccCC
Confidence 5689999986 89999999654 66666521 1224567888863
No 259
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=35.73 E-value=23 Score=25.03 Aligned_cols=8 Identities=38% Similarity=1.273 Sum_probs=4.5
Q ss_pred eCCCCCCc
Q 045109 369 PCETCSGS 376 (423)
Q Consensus 369 pC~~C~GS 376 (423)
.|..|+|-
T Consensus 5 ~C~~C~~~ 12 (33)
T PF08792_consen 5 KCSKCGGN 12 (33)
T ss_pred EcCCCCCC
Confidence 45555555
No 260
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=34.90 E-value=31 Score=27.32 Aligned_cols=39 Identities=15% Similarity=0.443 Sum_probs=26.9
Q ss_pred cceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 365 VRFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 365 ~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
.+++.|+.|++..++-++.+.+ -..--+-||.|-.--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~-------------LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTV-------------LKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCce-------------eccccccCCCCCceEEE
Confidence 4689999999999998885331 11124789998654443
No 261
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=34.57 E-value=36 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=19.6
Q ss_pred EeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCC
Q 045109 368 VPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNE 412 (423)
Q Consensus 368 VpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNE 412 (423)
+-|+.|+....+-.+. . ......+||+.|.+
T Consensus 3 i~Cp~C~~~y~i~d~~-----------i---p~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK-----------I---PPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHH-----------C---CCCCcEEECCCCCC
Confidence 6788888776553220 0 12345799999975
No 262
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=34.44 E-value=3.7e+02 Score=25.07 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHH
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEI 329 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV 329 (423)
..+|++..|. .+. ...+.. .++.|+.+|+......+... ....++.+.+. ..--|||.| |..-.+
T Consensus 29 ~~~i~~iptA-~~~---~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~------~ad~I~~~G---G~~~~~ 94 (210)
T cd03129 29 GARVLFIPTA-SGD---RDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLL------EADGIFVGG---GNQLRL 94 (210)
T ss_pred CCeEEEEeCC-CCC---hHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHh------hCCEEEEcC---CcHHHH
Confidence 4555555443 333 233333 78999999998887776422 23345556554 245566666 444444
Q ss_pred HH-HHHcCchHHHHccc
Q 045109 330 RR-MHEEGQLEKVVEGC 345 (423)
Q Consensus 330 ~~-LhEsGeL~kLL~~~ 345 (423)
.+ |.+.+-|+.+++.+
T Consensus 95 ~~~l~~t~~~~~i~~~~ 111 (210)
T cd03129 95 LSVLRETPLLDAILKRV 111 (210)
T ss_pred HHHHHhCChHHHHHHHH
Confidence 44 56666777777654
No 263
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.35 E-value=1e+02 Score=29.93 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHH
Q 045109 273 HVRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 273 ~VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~L 332 (423)
.+|.||.-.+|.|++.-+.+... |..+...+.-..||.+-|||..|.-.-.+.+.
T Consensus 17 ~iR~lf~~a~v~fEd~r~~~~~~-----w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 17 PIRLLFAYAGVSFEDKRITMEDA-----WEELKDKMPFGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred HHHHHHHhcCCCcceeeeccccc-----hhhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence 37999999999999999976543 33333333445899999999999877777663
No 264
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.23 E-value=94 Score=30.48 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCcEEEEECCCChhh---HHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHH
Q 045109 273 HVRVILKGLGVRVDERDLSMHSGF---KNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRR 331 (423)
Q Consensus 273 ~VK~LL~~~gV~yeErDVsmd~~~---reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~ 331 (423)
+||-.|.-+||.|+.+-|+.-.+. -.|+++. -...+||.+-|||.-|-..-.+.+
T Consensus 19 RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~i----NPm~kVP~L~i~g~tl~eS~AII~ 76 (217)
T KOG0868|consen 19 RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEI----NPMEKVPTLVIDGLTLTESLAIIE 76 (217)
T ss_pred HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhc----CchhhCCeEEECCEEeehHHHHHH
Confidence 489999999999999887644332 1244443 224589999999998876655555
No 265
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=33.06 E-value=1.2e+02 Score=26.99 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=36.1
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhC-----C-CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEE
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGL-----G-VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKY 322 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~-----g-V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~ 322 (423)
+...|||-++ .+||+-|. +--+|.++ + +.+..+|++.-++ +.+.++-..-+..+ +|-+|+|
T Consensus 13 ~~klVVVdF~------a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d----va~~y~I~amPtfv--ffkngkh 80 (114)
T cd02986 13 AEKVLVLRFG------RDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV----YTQYFDISYIPSTI--FFFNGQH 80 (114)
T ss_pred CCCEEEEEEe------CCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH----HHHhcCceeCcEEE--EEECCcE
Confidence 4666777764 68997665 54555432 3 7788889874433 33333311112233 7788998
Q ss_pred E
Q 045109 323 I 323 (423)
Q Consensus 323 I 323 (423)
|
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 7
No 266
>PTZ00062 glutaredoxin; Provisional
Probab=33.00 E-value=1.3e+02 Score=29.02 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCc--eEeCCEE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKGL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPR--VFVGKKY 322 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQ--VFVdGe~ 322 (423)
.+.+|+|++ .+||+-|+ +..+|..+ .|.|..+|.+ .+-..+|. +|-+|+.
T Consensus 17 ~g~~vl~f~------a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 17 TGKLVLYVK------SSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CCcEEEEEe------CCCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------------cCcccceEEEEEECCEE
Confidence 577888875 47887665 55555443 3555555543 12346884 3457766
Q ss_pred Ec
Q 045109 323 IG 324 (423)
Q Consensus 323 IG 324 (423)
|+
T Consensus 75 i~ 76 (204)
T PTZ00062 75 IN 76 (204)
T ss_pred Ee
Confidence 65
No 267
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=32.83 E-value=24 Score=35.07 Aligned_cols=22 Identities=32% Similarity=0.922 Sum_probs=13.1
Q ss_pred CccccccC--------------ccceEeCCCCCCcc
Q 045109 356 VGACEACG--------------DVRFVPCETCSGSC 377 (423)
Q Consensus 356 ~~~C~~CG--------------G~rfVpC~~C~GS~ 377 (423)
.+.|.-|| |.||.-|+.|+-.-
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W 207 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEW 207 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EE
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCee
Confidence 46799997 46899999988763
No 268
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=32.69 E-value=1.4e+02 Score=27.29 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=34.8
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-HH----HHHHhC---CCcEEEEECCCChhhHHHHHHHHcCCC--CCCCCCc--eEeC
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-VR----VILKGL---GVRVDERDLSMHSGFKNELKELLGDGF--SGGGLPR--VFVG 319 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-VK----~LL~~~---gV~yeErDVsmd~~~reEL~~lLg~~t--g~~TVPQ--VFVd 319 (423)
..|||++ -.++|+-|. +. ++.+.+ ++.+-.+|++.+. ++.+.++-.+ +.+.+|. +|.+
T Consensus 48 ~~vvV~F------ya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~----~la~~~~V~~~~~v~~~PT~ilf~~ 117 (152)
T cd02962 48 VTWLVEF------FTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP----NVAEKFRVSTSPLSKQLPTIILFQG 117 (152)
T ss_pred CEEEEEE------ECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH----HHHHHcCceecCCcCCCCEEEEEEC
Confidence 3456654 457998776 33 333443 4778888886554 4444443211 1123675 4668
Q ss_pred CEEEc
Q 045109 320 KKYIG 324 (423)
Q Consensus 320 Ge~IG 324 (423)
|+.++
T Consensus 118 Gk~v~ 122 (152)
T cd02962 118 GKEVA 122 (152)
T ss_pred CEEEE
Confidence 86654
No 269
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=32.47 E-value=30 Score=23.59 Aligned_cols=9 Identities=44% Similarity=1.161 Sum_probs=6.6
Q ss_pred ceeeCCCCC
Q 045109 403 GFQRCPDCN 411 (423)
Q Consensus 403 ~~~RC~~CN 411 (423)
-.++|+.|+
T Consensus 20 ~~r~C~~Cg 28 (32)
T PF09297_consen 20 WARRCPSCG 28 (32)
T ss_dssp S-EEESSSS
T ss_pred CEeECCCCc
Confidence 378999996
No 270
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=30.75 E-value=2.4e+02 Score=21.76 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhC---CCcEEEEECCCChhhHHHHHHHHc
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGL---GVRVDERDLSMHSGFKNELKELLG 305 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~---gV~yeErDVsmd~~~reEL~~lLg 305 (423)
.+.++||+ ..++|+.|. ++.+-+.+ ++.+.-++++.. -.+++++.+.
T Consensus 19 ~k~~ll~f------~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~--~~~~~~~~~~ 73 (116)
T cd02966 19 GKVVLVNF------WASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD--DPAAVKAFLK 73 (116)
T ss_pred CCEEEEEe------ecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC--CHHHHHHHHH
Confidence 34555554 457899886 34555554 466666666533 2345555443
No 271
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=30.53 E-value=2.7e+02 Score=27.71 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=46.2
Q ss_pred CCCCCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHHH
Q 045109 264 IRKTYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHE 334 (423)
Q Consensus 264 IRKT~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~LhE 334 (423)
-+..-|++|. +-..|...++.|...-|++... -++++.+.. .+.+|-|-+||+.+-..+.+.+..|
T Consensus 16 ~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~k-p~~f~~~sp----~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 16 DSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRK-PEWFLDISP----GGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred ccCCCChhHHHHHHHHHHcCCCceEEEeecCCC-cHHHHhhCC----CCCCCeEEeCCceeccHHHHHHHHH
Confidence 4455699876 7777888888766554443321 245666543 4589999999999999998877544
No 272
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=30.48 E-value=1.3e+02 Score=23.81 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=29.5
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-----HHHHHHhCC--CcEEEEECCCChhhHHHHHHHHcCC
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-----VRVILKGLG--VRVDERDLSMHSGFKNELKELLGDG 307 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~g--V~yeErDVsmd~~~reEL~~lLg~~ 307 (423)
.++||+.| ++|+.|. ++++-+.++ -.++.+-|+++ +..+++++.+...
T Consensus 3 ~~ll~fwa------~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 3 PVLLYFWA------SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-EDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEEEE-------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-SSHHHHHHHHHTC
T ss_pred EEEEEEEC------CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-CCHHHHHHHHHhc
Confidence 35566543 6898775 355556666 66777777666 4466777777643
No 273
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=30.36 E-value=1.6e+02 Score=23.71 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH-H----HHHHHhC--CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE--eCC
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH-V----RVILKGL--GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF--VGK 320 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~-V----K~LL~~~--gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF--VdG 320 (423)
+.|+|++. .++|+.|+ + ..+.+.+ ++.+-.+|.+.. .++.+.++ ...+|.++ -+|
T Consensus 20 ~~v~v~f~------a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~----i~~~Pt~~~~~~g 83 (104)
T cd03004 20 EPWLVDFY------APWCGPCQALLPELRKAARALKGKVKVGSVDCQKY----ESLCQQAN----IRAYPTIRLYPGN 83 (104)
T ss_pred CeEEEEEE------CCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch----HHHHHHcC----CCcccEEEEEcCC
Confidence 35666653 47998776 3 4444454 366777777532 34444443 35678664 355
No 274
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=30.31 E-value=2.8e+02 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH--HH--HHHHhCCCcEEEEECCCC
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH--VR--VILKGLGVRVDERDLSMH 293 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~--VK--~LL~~~gV~yeErDVsmd 293 (423)
...|||++. .++|+.|. +- .-|...++.+.-++++.+
T Consensus 68 gk~vvv~Fw------atwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~ 108 (185)
T PRK15412 68 GKPVLLNVW------ATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDD 108 (185)
T ss_pred CCEEEEEEE------CCCCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 445666654 48999887 22 224556777766665433
No 275
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=30.05 E-value=40 Score=24.40 Aligned_cols=8 Identities=50% Similarity=1.327 Sum_probs=5.7
Q ss_pred ceeeCCCC
Q 045109 403 GFQRCPDC 410 (423)
Q Consensus 403 ~~~RC~~C 410 (423)
+..-|+.|
T Consensus 18 g~~vC~~C 25 (43)
T PF08271_consen 18 GELVCPNC 25 (43)
T ss_dssp TEEEETTT
T ss_pred CeEECCCC
Confidence 35678888
No 276
>PRK10357 putative glutathione S-transferase; Provisional
Probab=29.93 E-value=2e+02 Score=26.07 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=38.4
Q ss_pred CCCcHHH-HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe-CCEEEcchHHHHH
Q 045109 267 TYEDCCH-VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV-GKKYIGGAEEIRR 331 (423)
Q Consensus 267 T~c~Cc~-VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV-dGe~IGGaDEV~~ 331 (423)
..+++.. |+-+|+.+||.|+.+.++.... ..++.++ ....+||.+.. +|.-|-....|.+
T Consensus 7 ~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~----nP~g~vP~L~~~~g~~l~eS~aI~~ 68 (202)
T PRK10357 7 YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQY----NPLGKVPALVTEEGECWFDSPIIAE 68 (202)
T ss_pred CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhc----CCccCCCeEEeCCCCeeecHHHHHH
Confidence 3467765 8999999999999988864321 1233332 23458999985 5655554444443
No 277
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=29.91 E-value=1.2e+02 Score=30.45 Aligned_cols=67 Identities=12% Similarity=0.249 Sum_probs=42.9
Q ss_pred hhHHHhhhcCCCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhCCCcEEEEECCCC--hhhH-----HHHHHHHcCCC
Q 045109 241 NGAVLDHKCGKEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGLGVRVDERDLSMH--SGFK-----NELKELLGDGF 308 (423)
Q Consensus 241 ~~~~v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~gV~yeErDVsmd--~~~r-----eEL~~lLg~~t 308 (423)
....|..+-....+++|+ +..|++|. ++.+=+.+|+.+..++++-. +++- ..+...++
T Consensus 141 ~~~~i~~la~~~gL~fFy-------~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~--- 210 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFY-------RGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLG--- 210 (256)
T ss_pred HHHHHHHHHhceeEEEEE-------CCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcC---
Confidence 455666677778888774 45699986 46677899998877776522 1111 23444444
Q ss_pred CCCCCCceEe
Q 045109 309 SGGGLPRVFV 318 (423)
Q Consensus 309 g~~TVPQVFV 318 (423)
...+|.+|+
T Consensus 211 -v~~~Pal~L 219 (256)
T TIGR02739 211 -VKYFPALYL 219 (256)
T ss_pred -CccCceEEE
Confidence 346899886
No 278
>PRK07220 DNA topoisomerase I; Validated
Probab=29.45 E-value=60 Score=36.94 Aligned_cols=16 Identities=50% Similarity=1.265 Sum_probs=11.7
Q ss_pred ccccccCc----------cceEeCCC
Q 045109 357 GACEACGD----------VRFVPCET 372 (423)
Q Consensus 357 ~~C~~CGG----------~rfVpC~~ 372 (423)
..|..||+ .+|+-|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs~ 615 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCEG 615 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcCC
Confidence 46999984 34788865
No 279
>PRK02935 hypothetical protein; Provisional
Probab=29.30 E-value=36 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=19.7
Q ss_pred eEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCC
Q 045109 367 FVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNEN 413 (423)
Q Consensus 367 fVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNEN 413 (423)
-|.|++|+--.|+.-+ .-+|..|||.
T Consensus 70 qV~CP~C~K~TKmLGr---------------------vD~CM~C~~P 95 (110)
T PRK02935 70 QVICPSCEKPTKMLGR---------------------VDACMHCNQP 95 (110)
T ss_pred eeECCCCCchhhhccc---------------------eeecCcCCCc
Confidence 4689999988887644 3479999984
No 280
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=29.29 E-value=14 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=11.6
Q ss_pred CCceEeCC-EEEcchHH
Q 045109 313 LPRVFVGK-KYIGGAEE 328 (423)
Q Consensus 313 VPQVFVdG-e~IGGaDE 328 (423)
-||++||| ++.+|.+.
T Consensus 71 TPQ~vVnG~~~~~g~~~ 87 (202)
T PF06764_consen 71 TPQVVVNGREHRVGSDR 87 (202)
T ss_dssp SSEEEETTTEEEETT-H
T ss_pred CCeEEECCeeeeeccCH
Confidence 49999999 56667663
No 281
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=29.25 E-value=2.1e+02 Score=24.08 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=12.0
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH 273 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~ 273 (423)
...|+||+. .++|+.|.
T Consensus 18 gk~vll~Fw------a~wC~~C~ 34 (131)
T cd03009 18 GKTVGLYFS------ASWCPPCR 34 (131)
T ss_pred CcEEEEEEE------CCCChHHH
Confidence 445777764 47898886
No 282
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=29.23 E-value=35 Score=25.25 Aligned_cols=10 Identities=30% Similarity=1.178 Sum_probs=7.2
Q ss_pred eeeCCCCCCC
Q 045109 404 FQRCPDCNEN 413 (423)
Q Consensus 404 ~~RC~~CNEN 413 (423)
...||.|...
T Consensus 26 ~~~CP~Cg~~ 35 (52)
T TIGR02605 26 LATCPECGGE 35 (52)
T ss_pred CCCCCCCCCC
Confidence 4578888863
No 283
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=28.72 E-value=2.9e+02 Score=25.38 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=37.4
Q ss_pred cHH-HHHHHHHhCCCcEEEEECCCChhh--HHHHHHHHcCCCCCCCCCceEe-----CC--EEEcchHHHHH
Q 045109 270 DCC-HVRVILKGLGVRVDERDLSMHSGF--KNELKELLGDGFSGGGLPRVFV-----GK--KYIGGAEEIRR 331 (423)
Q Consensus 270 ~Cc-~VK~LL~~~gV~yeErDVsmd~~~--reEL~~lLg~~tg~~TVPQVFV-----dG--e~IGGaDEV~~ 331 (423)
+|+ +|+-+|+.+||.|+.+.|++.... ..++.++ .....||.+.. +| .-|--..-|.+
T Consensus 10 ~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~i----NP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~ 77 (215)
T PRK13972 10 PNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRI----SPNNKIPAIVDHSPADGGEPLSLFESGAILL 77 (215)
T ss_pred CChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhh----CcCCCCCEEEeCCCCCCCCceeEEcHHHHHH
Confidence 455 489999999999998888754321 2455443 22358999977 34 24555555555
No 284
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.28 E-value=3.6e+02 Score=26.52 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=29.2
Q ss_pred HhhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhCCCcEEEEECC
Q 045109 245 LDHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGLGVRVDERDLS 291 (423)
Q Consensus 245 v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~gV~yeErDVs 291 (423)
+...++.++-|+|..+-.+. ..+..|-. +++.|+.+|+.+...++.
T Consensus 24 ~~~~~~~~~~v~fIPtAs~~-~~~~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 24 IAELLAGRRKAVFIPYAGVT-QSWDDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred HHHHHcCCCeEEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 33444455656665554332 33445544 899999999998887764
No 285
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=27.54 E-value=33 Score=30.82 Aligned_cols=54 Identities=15% Similarity=0.447 Sum_probs=37.7
Q ss_pred CceEeCCEEEcchHHHHHHHHcCchHHHHcccccccCCCCCCCccccccCccceEeCCCCCCcceeccccchhhhcccCC
Q 045109 314 PRVFVGKKYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGRGNVGACEACGDVRFVPCETCSGSCKIYYEKEEEVEEDSEG 393 (423)
Q Consensus 314 PQVFVdGe~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~g~~~~C~~CGG~rfVpC~~C~GS~Kv~~~~~~~~~~~~~~ 393 (423)
-++.|+|+ +....|+.+|..+= ..||.|..|+..--.+..+
T Consensus 69 ~~lii~G~-----------~~~~~i~~~L~~fI------------------~~yVlC~~C~spdT~l~k~---------- 109 (125)
T PF01873_consen 69 GRLIINGR-----------FSSKQIQDLLDKFI------------------KEYVLCPECGSPDTELIKE---------- 109 (125)
T ss_dssp TEEEEESS-----------SSCCHHHHHHHHHH------------------CHHSSCTSTSSSSEEEEEE----------
T ss_pred CEEEEEEe-----------cCHHHHHHHHHHHH------------------HHEEEcCCCCCCccEEEEc----------
Confidence 56677775 56678888888754 2689999998775555441
Q ss_pred CCccccCccceeeCCCCCC
Q 045109 394 GWVGEEADFGFQRCPDCNE 412 (423)
Q Consensus 394 ~~~~~~~~~~~~RC~~CNE 412 (423)
+..-+++|-+|..
T Consensus 110 ------~r~~~l~C~aCGa 122 (125)
T PF01873_consen 110 ------GRLIFLKCKACGA 122 (125)
T ss_dssp ------TTCCEEEETTTSC
T ss_pred ------CCEEEEEecccCC
Confidence 2335899999974
No 286
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=27.19 E-value=58 Score=29.81 Aligned_cols=35 Identities=14% Similarity=0.429 Sum_probs=23.7
Q ss_pred ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 366 RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 366 rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
.||.|..|+-.--.+..+ +..-+++|-+|..-.-|
T Consensus 101 ~yVlC~~C~spdT~l~k~----------------~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIKE----------------GRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEEc----------------CCeEEEEcccCCCCCcC
Confidence 589999998875444431 23358999999865443
No 287
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.04 E-value=42 Score=22.53 Aligned_cols=17 Identities=35% Similarity=1.114 Sum_probs=8.4
Q ss_pred eCCCCCCC---CcccCCCCC
Q 045109 406 RCPDCNEN---GLTRCPICC 422 (423)
Q Consensus 406 RC~~CNEN---GLirCp~C~ 422 (423)
+||+|... .-..||.|-
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG 21 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCG 21 (26)
T ss_pred cCCCCcCCchhhcCcCCCCC
Confidence 45555543 334555554
No 288
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=26.45 E-value=51 Score=29.05 Aligned_cols=30 Identities=20% Similarity=0.589 Sum_probs=20.9
Q ss_pred ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCC
Q 045109 366 RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCN 411 (423)
Q Consensus 366 rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CN 411 (423)
.||.|..|+-.--.+..+ +..-+++|-+|.
T Consensus 79 ~yVlC~~C~spdT~l~k~----------------~r~~~l~C~aCG 108 (110)
T smart00653 79 EYVLCPECGSPDTELIKE----------------NRLFFLKCEACG 108 (110)
T ss_pred hcEECCCCCCCCcEEEEe----------------CCeEEEEccccC
Confidence 589999998885444431 123589999996
No 289
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.40 E-value=31 Score=30.35 Aligned_cols=9 Identities=22% Similarity=0.981 Sum_probs=5.0
Q ss_pred eeeCCCCCC
Q 045109 404 FQRCPDCNE 412 (423)
Q Consensus 404 ~~RC~~CNE 412 (423)
+.+||.|.-
T Consensus 88 ~~~CP~Cgs 96 (117)
T PRK00564 88 YGVCEKCHS 96 (117)
T ss_pred CCcCcCCCC
Confidence 445666654
No 290
>PLN02436 cellulose synthase A
Probab=26.36 E-value=41 Score=40.07 Aligned_cols=27 Identities=41% Similarity=1.011 Sum_probs=21.9
Q ss_pred CccccccCcc--------ceEeCCCCCCc-ceeccc
Q 045109 356 VGACEACGDV--------RFVPCETCSGS-CKIYYE 382 (423)
Q Consensus 356 ~~~C~~CGG~--------rfVpC~~C~GS-~Kv~~~ 382 (423)
+..|.-||+. =||.|-.|+=. ||.-++
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye 71 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE 71 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhh
Confidence 5689999986 79999999765 676665
No 291
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.21 E-value=37 Score=27.33 Aligned_cols=20 Identities=30% Similarity=0.718 Sum_probs=17.0
Q ss_pred ceeeCCC--CCCCCcccCCCCC
Q 045109 403 GFQRCPD--CNENGLTRCPICC 422 (423)
Q Consensus 403 ~~~RC~~--CNENGLirCp~C~ 422 (423)
+...|.. |++.+.|+|+-|-
T Consensus 26 ~~~~C~~~gC~~~s~I~C~~Ck 47 (63)
T PF04236_consen 26 VAGDCDITGCNNTSFIRCAYCK 47 (63)
T ss_pred CcCcCCCCCCCCcCEEEccccC
Confidence 4567888 9999999999883
No 292
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=26.11 E-value=64 Score=29.38 Aligned_cols=35 Identities=14% Similarity=0.494 Sum_probs=23.3
Q ss_pred ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCcc
Q 045109 366 RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGLT 416 (423)
Q Consensus 366 rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGLi 416 (423)
.||.|..|+-.--.+..+ +..-+++|-+|..-.-|
T Consensus 96 ~yVlC~~C~sPdT~l~k~----------------~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKE----------------GRVSLLKCEACGAKAPL 130 (133)
T ss_pred heEECCCCCCCCcEEEEe----------------CCeEEEecccCCCCCcc
Confidence 699999998875444431 12347899999765433
No 293
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=25.74 E-value=1e+02 Score=28.27 Aligned_cols=58 Identities=12% Similarity=0.268 Sum_probs=31.7
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHh----CC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce-Ee-CCE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKG----LG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV-FV-GKK 321 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~----~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV-FV-dGe 321 (423)
...|||-+ ..+||+-|. +--+|+. ++ +.+..+||+..+ ++...++-. ..+|.+ |. +|+
T Consensus 23 ~~lVVvdF------~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~----dla~~y~I~---~~~t~~~ffk~g~ 89 (142)
T PLN00410 23 ERLVVIRF------GHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP----DFNTMYELY---DPCTVMFFFRNKH 89 (142)
T ss_pred CCEEEEEE------ECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH----HHHHHcCcc---CCCcEEEEEECCe
Confidence 44566654 568998555 4445543 32 556788887543 444444321 145666 44 443
No 294
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=24.90 E-value=3e+02 Score=24.30 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCCCCCCC--CcHHH-HHHHH----HhCC--CcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeC
Q 045109 251 KEKLVVYFTSLRGIRKTY--EDCCH-VRVIL----KGLG--VRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVG 319 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~--c~Cc~-VK~LL----~~~g--V~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVd 319 (423)
.+.+||++ ..++ |+-|. +.-+| +.+. +.+..+|++.. .+|...++ -.++|.+ |-+
T Consensus 27 ~~~~v~~f------~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~----~~la~~f~----V~sIPTli~fkd 92 (111)
T cd02965 27 GGDLVLLL------AGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE----QALAARFG----VLRTPALLFFRD 92 (111)
T ss_pred CCCEEEEe------cCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC----HHHHHHcC----CCcCCEEEEEEC
Confidence 35555554 3454 87565 44444 4543 45667777643 26666654 3467764 558
Q ss_pred CEEEcc
Q 045109 320 KKYIGG 325 (423)
Q Consensus 320 Ge~IGG 325 (423)
|+.++.
T Consensus 93 Gk~v~~ 98 (111)
T cd02965 93 GRYVGV 98 (111)
T ss_pred CEEEEE
Confidence 987754
No 295
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=24.74 E-value=2.6e+02 Score=25.19 Aligned_cols=71 Identities=21% Similarity=0.476 Sum_probs=39.8
Q ss_pred HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHHHcCchHHHHcccccccCCCC
Q 045109 274 VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHEEGQLEKVVEGCEMIDDGGR 353 (423)
Q Consensus 274 VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~LhEsGeL~kLL~~~~~~~~~~~ 353 (423)
++.+|..+||.+....+.|+.+ ++.... -..|.|.|||+. |.++| ++..-
T Consensus 32 l~~~L~~~Giev~l~~~~l~~~---~~~~~~------~~S~~I~inG~p---------------iE~~l-~~~v~----- 81 (120)
T PF10865_consen 32 LAPVLAPLGIEVRLEEIELDEE---EFARQP------LESPTIRINGRP---------------IEDLL-GAEVG----- 81 (120)
T ss_pred HHHHHHhCCcEEEEEEEECChH---HHhhcc------cCCCeeeECCEe---------------hhHhh-CCccc-----
Confidence 4566788887754444433332 222211 357999999983 45666 33331
Q ss_pred CCCccccccCccceEeCCCCCC-cceeccc
Q 045109 354 GNVGACEACGDVRFVPCETCSG-SCKIYYE 382 (423)
Q Consensus 354 g~~~~C~~CGG~rfVpC~~C~G-S~Kv~~~ 382 (423)
...|+.|+ |..|.+ .||++.-
T Consensus 82 --~s~C~~c~------~~~g~~~~CRt~~~ 103 (120)
T PF10865_consen 82 --ESPCESCG------CSCGGDVDCRTLEY 103 (120)
T ss_pred --cCcccccc------cccCCCccceeEEE
Confidence 34477776 334544 4777754
No 296
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.63 E-value=74 Score=32.86 Aligned_cols=11 Identities=27% Similarity=1.075 Sum_probs=6.1
Q ss_pred cceEeCCCCCC
Q 045109 365 VRFVPCETCSG 375 (423)
Q Consensus 365 ~rfVpC~~C~G 375 (423)
.||.-|+.|..
T Consensus 210 ~RyL~CslC~t 220 (309)
T PRK03564 210 LRYLHCNLCES 220 (309)
T ss_pred ceEEEcCCCCC
Confidence 45666655544
No 297
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=65 Score=30.16 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCCCCCCCCc-HHHHHHHHHhC------CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--EeCC
Q 045109 250 GKEKLVVYFTSLRGIRKTYED-CCHVRVILKGL------GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FVGK 320 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~-Cc~VK~LL~~~------gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FVdG 320 (423)
...+|+|=+ ..+||. |..+.-+|+.+ .+++..+|++.+.+ |.... +-..||.| |.||
T Consensus 60 S~~PVlVdF------~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y----~I~avPtvlvfknG 125 (150)
T KOG0910|consen 60 SDVPVLVDF------HAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDY----EISAVPTVLVFKNG 125 (150)
T ss_pred cCCCEEEEE------ecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhc----ceeeeeEEEEEECC
Confidence 456666544 457885 55455555433 46777888876543 33333 34578875 5688
Q ss_pred EEE
Q 045109 321 KYI 323 (423)
Q Consensus 321 e~I 323 (423)
+-+
T Consensus 126 e~~ 128 (150)
T KOG0910|consen 126 EKV 128 (150)
T ss_pred EEe
Confidence 544
No 298
>PLN02195 cellulose synthase A
Probab=24.23 E-value=45 Score=39.35 Aligned_cols=41 Identities=37% Similarity=0.802 Sum_probs=29.8
Q ss_pred CccccccCc--------cceEeCCCCCCc-ceeccccchhhhcccCCCCccccCccceeeCCCCC
Q 045109 356 VGACEACGD--------VRFVPCETCSGS-CKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCN 411 (423)
Q Consensus 356 ~~~C~~CGG--------~rfVpC~~C~GS-~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CN 411 (423)
+..|.-||+ .=||.|-.|.=. ||.-++-+ .+.+-+-||.|+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeye---------------r~eg~q~CpqCk 55 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYE---------------IKEGRKVCLRCG 55 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhh---------------hhcCCccCCccC
Confidence 457999998 889999999765 77766521 122456799987
No 299
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=24.10 E-value=3.9e+02 Score=25.26 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=48.2
Q ss_pred HhhhcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhC-CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEE
Q 045109 245 LDHKCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGL-GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKY 322 (423)
Q Consensus 245 v~~li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~-gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~ 322 (423)
+....+..+-|+|..+-.+. ...+.. +++.|+.+ |+.+...++.. .+++.+.+. ..=.||+.|
T Consensus 24 l~~~~~~~~~i~~IptAs~~---~~~~~~~~~~a~~~l~G~~~~~~~~~~----~~~~~~~l~------~ad~I~l~G-- 88 (212)
T cd03146 24 LLSLTKARPKVLFVPTASGD---RDEYTARFYAAFESLRGVEVSHLHLFD----TEDPLDALL------EADVIYVGG-- 88 (212)
T ss_pred HHHhccCCCeEEEECCCCCC---HHHHHHHHHHHHhhccCcEEEEEeccC----cccHHHHHh------cCCEEEECC--
Confidence 33444455556675554442 223333 79999999 99888887642 223333333 234577777
Q ss_pred EcchHHHHHHHHcCchHHHHccc
Q 045109 323 IGGAEEIRRMHEEGQLEKVVEGC 345 (423)
Q Consensus 323 IGGaDEV~~LhEsGeL~kLL~~~ 345 (423)
|....+++..+.-.|..+|+.+
T Consensus 89 -G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 89 -GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred -chHHHHHHHHHHcCHHHHHHHH
Confidence 6555555533333577777653
No 300
>PRK11752 putative S-transferase; Provisional
Probab=23.99 E-value=2.4e+02 Score=27.47 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=45.1
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhC------CCcEEEEECCCChh--hHHHHHHHHcCCCCCCCCCceEe
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILKGL------GVRVDERDLSMHSG--FKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~------gV~yeErDVsmd~~--~reEL~~lLg~~tg~~TVPQVFV 318 (423)
+.+.+.+.||+ .+ ++|+. |+-+|+.+ |+.|+.+.|+.... ...++.++ ....+||.+..
T Consensus 39 ~~~~~~~~Ly~-------~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~i----NP~GkVP~Lv~ 106 (264)
T PRK11752 39 PVGKHPLQLYS-------LG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEI----NPNSKIPALLD 106 (264)
T ss_pred CCCCCCeEEec-------CC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhh----CCCCCCCEEEe
Confidence 44677899993 22 56665 78778775 78888877754321 12344443 22358999977
Q ss_pred CC----EEEcchHHHHH
Q 045109 319 GK----KYIGGAEEIRR 331 (423)
Q Consensus 319 dG----e~IGGaDEV~~ 331 (423)
++ ..|-....|.+
T Consensus 107 ~dg~~~~~L~ES~AIl~ 123 (264)
T PRK11752 107 RSGNPPIRVFESGAILL 123 (264)
T ss_pred CCCCCCeEEEcHHHHHH
Confidence 52 45666666655
No 301
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.84 E-value=67 Score=38.24 Aligned_cols=43 Identities=26% Similarity=0.679 Sum_probs=29.5
Q ss_pred CccccccCcc-ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCCc-ccCCCCC
Q 045109 356 VGACEACGDV-RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENGL-TRCPICC 422 (423)
Q Consensus 356 ~~~C~~CGG~-rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENGL-irCp~C~ 422 (423)
...|..||-. -+..|+.|+.-.. ...+|+.|-.-+- -.||.|.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te------------------------~i~fCP~CG~~~~~y~CPKCG 670 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTE------------------------PVYRCPRCGIEVEEDECEKCG 670 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCC------------------------cceeCccccCcCCCCcCCCCC
Confidence 4569999975 4458999987611 1457888865443 5698885
No 302
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.52 E-value=2.4e+02 Score=25.85 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=39.5
Q ss_pred CcHHH-HHHHHHhCCCcEEEEECCCCh-hhHHHHHHHHcCCCCCCCCCceEeCCE-EEcchHHHHH
Q 045109 269 EDCCH-VRVILKGLGVRVDERDLSMHS-GFKNELKELLGDGFSGGGLPRVFVGKK-YIGGAEEIRR 331 (423)
Q Consensus 269 c~Cc~-VK~LL~~~gV~yeErDVsmd~-~~reEL~~lLg~~tg~~TVPQVFVdGe-~IGGaDEV~~ 331 (423)
.+++. |+-+|..+|+.|+.+.|+... ....++..+ .....||.+-.++- -|-....|.+
T Consensus 9 sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~----nP~gkVPvL~~~~~~~l~ES~AI~~ 70 (211)
T COG0625 9 SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLAL----NPLGKVPALVDDDGEVLTESGAILE 70 (211)
T ss_pred CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhc----CCCCCCCEEeeCCCCeeecHHHHHH
Confidence 37655 899999999999999998664 223344333 22458999988874 4555555444
No 303
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=23.39 E-value=80 Score=24.94 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=13.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH 273 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~ 273 (423)
...+|+||++ ..+|+.|.
T Consensus 16 ~~kpvlv~f~------a~wC~~C~ 33 (82)
T PF13899_consen 16 EGKPVLVDFG------ADWCPPCK 33 (82)
T ss_dssp HTSEEEEEEE------TTTTHHHH
T ss_pred cCCCEEEEEE------CCCCHhHH
Confidence 3567888864 58999886
No 304
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=23.30 E-value=2.1e+02 Score=23.86 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-H-HHHHHhCCC------cE--EEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-V-RVILKGLGV------RV--DERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-V-K~LL~~~gV------~y--eErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
...|+||.++ .+|+.|. + +.+|..-.| .| -..|+. .....++...++ ...+|.+.|
T Consensus 17 ~K~llv~~~~------~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~--~~e~~~~~~~~~----~~~~P~~~~ 82 (114)
T cd02958 17 KKWLLVYLQS------EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDID--SSEGQRFLQSYK----VDKYPHIAI 82 (114)
T ss_pred CceEEEEEec------CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCC--CccHHHHHHHhC----ccCCCeEEE
Confidence 4568888654 6785554 2 444443322 23 334553 333556666665 346887653
No 305
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.30 E-value=46 Score=39.67 Aligned_cols=27 Identities=41% Similarity=1.025 Sum_probs=21.3
Q ss_pred CccccccCcc--------ceEeCCCCCCc-ceeccc
Q 045109 356 VGACEACGDV--------RFVPCETCSGS-CKIYYE 382 (423)
Q Consensus 356 ~~~C~~CGG~--------rfVpC~~C~GS-~Kv~~~ 382 (423)
+..|.-||+. =||.|-.|.=. ||.-++
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE 52 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE 52 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh
Confidence 5679999987 89999999755 666665
No 306
>PRK00420 hypothetical protein; Validated
Probab=23.00 E-value=48 Score=29.55 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=7.3
Q ss_pred eeeCCCCCCC
Q 045109 404 FQRCPDCNEN 413 (423)
Q Consensus 404 ~~RC~~CNEN 413 (423)
...||.|.+.
T Consensus 40 ~~~Cp~Cg~~ 49 (112)
T PRK00420 40 EVVCPVHGKV 49 (112)
T ss_pred ceECCCCCCe
Confidence 5678888773
No 307
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=23.00 E-value=3.4e+02 Score=23.69 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=20.7
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhC---CCcEEEEECC
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGL---GVRVDERDLS 291 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~---gV~yeErDVs 291 (423)
..+.++||+. .++|+.|. +.++.+.+ ++.+-.++.+
T Consensus 60 ~~k~~~l~f~------a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d 103 (173)
T PRK03147 60 KGKGVFLNFW------GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD 103 (173)
T ss_pred CCCEEEEEEE------CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 3455767764 46899886 23444443 3555555554
No 308
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.64 E-value=55 Score=23.78 Aligned_cols=13 Identities=23% Similarity=0.744 Sum_probs=8.7
Q ss_pred eeeCCCCCCCCcc
Q 045109 404 FQRCPDCNENGLT 416 (423)
Q Consensus 404 ~~RC~~CNENGLi 416 (423)
...||.|....+.
T Consensus 26 ~~~CP~Cg~~~~~ 38 (42)
T PF09723_consen 26 PVPCPECGSTEVR 38 (42)
T ss_pred CCcCCCCCCCceE
Confidence 4678888875443
No 309
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.43 E-value=46 Score=29.93 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=19.5
Q ss_pred ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCC
Q 045109 366 RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNEN 413 (423)
Q Consensus 366 rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNEN 413 (423)
--|.|++|+--.|+.-+ .-+|..|++.
T Consensus 68 v~V~CP~C~K~TKmLGr---------------------~D~CM~C~~p 94 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGR---------------------VDACMHCKEP 94 (114)
T ss_pred eeeECCCCCChHhhhch---------------------hhccCcCCCc
Confidence 45678999888776543 2379999874
No 310
>PRK00114 hslO Hsp33-like chaperonin; Reviewed
Probab=22.21 E-value=4.9e+02 Score=26.26 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=69.1
Q ss_pred CCCC--CHHHHHHHHHHhhhcCCCCCCcCCCCccCcchhhhchhhhccChhHHHhhhcCCCcEEEEEeCCCCCCCCCCcH
Q 045109 194 ALEF--DPDVIKTFRKSFQELSPRHPFHLRPLENDKLPAALDSLDVKKSNGAVLDHKCGKEKLVVYFTSLRGIRKTYEDC 271 (423)
Q Consensus 194 ~~~f--dp~~is~frkal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~kVVIYtTSLrGIRKT~c~C 271 (423)
.|.- +.+.|..+++-|.++++-..+ +....+++.++..+.+...+.|+-+ +- -+-+|+|
T Consensus 180 LP~~~~~~~~i~~l~~~l~~~~~~~~~----------------l~~~~~~e~ll~~lf~~~~~~il~~--~~-v~f~C~C 240 (293)
T PRK00114 180 LPGAAEDFEHLATLEERIKEEELFSLL----------------LESGLTAEELLYRLYHEEDVKILEP--QP-VEFKCDC 240 (293)
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcchH----------------hhcCCCHHHHHHHHhCCCCceeccC--cc-CceeCCC
Confidence 4545 788888888877764332211 1112346667777777667777722 11 2345999
Q ss_pred HH--HHHHHHhCCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEeCCEEEcchHHHHHHHH
Q 045109 272 CH--VRVILKGLGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFVGKKYIGGAEEIRRMHE 334 (423)
Q Consensus 272 c~--VK~LL~~~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFVdGe~IGGaDEV~~LhE 334 (423)
.+ ++..|..++ ++||++++.+. +...|=.=|=+-+|.=..+++.+|.+
T Consensus 241 S~er~~~~L~~Lg--------------~~El~~i~~e~-~~iev~C~FC~~~Y~f~~~dl~~l~~ 290 (293)
T PRK00114 241 SRERSANALKSLG--------------KEELQEMIAED-GGAEMVCQFCGNKYLFDEEDLEELIA 290 (293)
T ss_pred CHHHHHHHHHhCC--------------HHHHHHHHHcC-CCEEEEEeCCCCEEEeCHHHHHHHHh
Confidence 76 888998887 46888887642 33455666777788888888888765
No 311
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=22.18 E-value=4.1e+02 Score=21.38 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=37.4
Q ss_pred cHHHHHHHHHhCCCc---EEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe-CCEEEcchHHHHHH
Q 045109 270 DCCHVRVILKGLGVR---VDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV-GKKYIGGAEEIRRM 332 (423)
Q Consensus 270 ~Cc~VK~LL~~~gV~---yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV-dGe~IGGaDEV~~L 332 (423)
.|-++..+|+-.+.+ |+.+-.+ +. ..+....||.+.. +|+.|.|+..+.+.
T Consensus 16 ecLa~~~yl~~~~~~~~~~~vv~s~-n~-----------~~Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 16 ECLAVIAYLKFAGAPEQQFKVVPSN-NP-----------WLSPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEcC-CC-----------CcCCCCCCCEEEECCCcEEECHHHHHHh
Confidence 455688899988888 6666543 11 1233458999999 99999999998764
No 312
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.12 E-value=41 Score=35.69 Aligned_cols=28 Identities=32% Similarity=0.737 Sum_probs=22.8
Q ss_pred CccccccCc------cceEeCCCCCCcceecccc
Q 045109 356 VGACEACGD------VRFVPCETCSGSCKIYYEK 383 (423)
Q Consensus 356 ~~~C~~CGG------~rfVpC~~C~GS~Kv~~~~ 383 (423)
+.-|..||+ ++.+-|+.|.|=.|.-+-|
T Consensus 15 ~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQN 48 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN 48 (475)
T ss_pred ccccccccCccccceeeeeehhhhhhHHHHHhhc
Confidence 456999998 6889999999987776654
No 313
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=22.11 E-value=5.7e+02 Score=23.03 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-HH---HHHHhCCCcEEEEECC
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-VR---VILKGLGVRVDERDLS 291 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-VK---~LL~~~gV~yeErDVs 291 (423)
....|+||+. .++|+.|. .. .-|...++.+-.++++
T Consensus 62 ~gk~vll~F~------a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~ 101 (173)
T TIGR00385 62 QGKPVLLNVW------ASWCPPCRAEHPYLNELAKDGLPIVGVDYK 101 (173)
T ss_pred CCCEEEEEEE------CCcCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3456777765 47999887 22 2234456776666653
No 314
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=22.08 E-value=3e+02 Score=23.31 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=27.5
Q ss_pred cEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 253 KLVVYFTSLRGIRKTYEDCCH-VRVILK----GL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 253 kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
.|+|++. .++|+-|. +...|+ .+ .|.+-.+|.+.+ ...++.+.++ ...+|.+++
T Consensus 21 ~vvV~f~------a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~~----i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFY------ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALCRDFG----VTGYPTLRY 84 (114)
T ss_pred eEEEEEE------CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHHHhCC----CCCCCEEEE
Confidence 5666654 47898776 333332 22 144555554322 1234444443 356887765
No 315
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=22.03 E-value=1.5e+02 Score=24.34 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=11.2
Q ss_pred CcEEEEEeCCCCCCCCCCcHHH
Q 045109 252 EKLVVYFTSLRGIRKTYEDCCH 273 (423)
Q Consensus 252 ~kVVIYtTSLrGIRKT~c~Cc~ 273 (423)
+.++||+. .++|+.|.
T Consensus 21 k~~vl~F~------~~~C~~C~ 36 (123)
T cd03011 21 KPVLVYFW------ATWCPVCR 36 (123)
T ss_pred CEEEEEEE------CCcChhhh
Confidence 55667664 36899887
No 316
>PRK05978 hypothetical protein; Provisional
Probab=21.91 E-value=46 Score=30.97 Aligned_cols=18 Identities=44% Similarity=1.132 Sum_probs=11.0
Q ss_pred eeeCCCCCCCCc--------ccCCCC
Q 045109 404 FQRCPDCNENGL--------TRCPIC 421 (423)
Q Consensus 404 ~~RC~~CNENGL--------irCp~C 421 (423)
..|||.|.|-.| -+|+.|
T Consensus 33 ~grCP~CG~G~LF~g~Lkv~~~C~~C 58 (148)
T PRK05978 33 RGRCPACGEGKLFRAFLKPVDHCAAC 58 (148)
T ss_pred cCcCCCCCCCcccccccccCCCcccc
Confidence 346666666665 456666
No 317
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=21.86 E-value=2.1e+02 Score=26.15 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCCCCCCCcHHH-----HHHHHHhCCCcEEEEECC
Q 045109 250 GKEKLVVYFTSLRGIRKTYEDCCH-----VRVILKGLGVRVDERDLS 291 (423)
Q Consensus 250 ~~~kVVIYtTSLrGIRKT~c~Cc~-----VK~LL~~~gV~yeErDVs 291 (423)
++.+||.| -.++|+.|+ +.++-+.+++.+.-++++
T Consensus 50 ~~~~lvnF-------WAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d 89 (153)
T TIGR02738 50 DDYALVFF-------YQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLD 89 (153)
T ss_pred CCCEEEEE-------ECCCChhHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 44556666 467999886 355556778776665554
No 318
>PRK10542 glutathionine S-transferase; Provisional
Probab=21.85 E-value=2.4e+02 Score=25.32 Aligned_cols=57 Identities=9% Similarity=0.181 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCcEEEEECCCChh---hHHHHHHHHcCCCCCCCCCceEe-CCEEEcchHHHHHH
Q 045109 272 CHVRVILKGLGVRVDERDLSMHSG---FKNELKELLGDGFSGGGLPRVFV-GKKYIGGAEEIRRM 332 (423)
Q Consensus 272 c~VK~LL~~~gV~yeErDVsmd~~---~reEL~~lLg~~tg~~TVPQVFV-dGe~IGGaDEV~~L 332 (423)
.+++-+|+.+||.|+.+.|++... ..+++.++ .....||.+-+ +|..|-....|.+.
T Consensus 12 ~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~----nP~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 12 LASHITLRESGLDFTLVSVDLAKKRLENGDDYLAI----NPKGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred HHHHHHHHHcCCCceEEEeecccccccCChHHHHh----CcCCCCCeEEeCCCcEeecHHHHHHH
Confidence 347888999999999888765421 11344433 22358999977 66777777766663
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=2.7e+02 Score=28.95 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=39.6
Q ss_pred hcCCCcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hCCC--cEEEEECCCChhhHHHHHHHHcCCCCCCCCCce--Ee
Q 045109 248 KCGKEKLVVYFTSLRGIRKTYEDCCH-VRVILK----GLGV--RVDERDLSMHSGFKNELKELLGDGFSGGGLPRV--FV 318 (423)
Q Consensus 248 li~~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~gV--~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQV--FV 318 (423)
.-...+|+||+ -.++|+-|. ..-+|+ .++= .+-.+|++.++ .+-..+| -.++|.| |+
T Consensus 40 ~S~~~PVlV~f------Wap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p----~vAaqfg----iqsIPtV~af~ 105 (304)
T COG3118 40 SSREVPVLVDF------WAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP----MVAAQFG----VQSIPTVYAFK 105 (304)
T ss_pred HccCCCeEEEe------cCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch----hHHHHhC----cCcCCeEEEee
Confidence 33566888885 457887665 454444 4443 34455665443 3444444 4578876 68
Q ss_pred CCEEEcch
Q 045109 319 GKKYIGGA 326 (423)
Q Consensus 319 dGe~IGGa 326 (423)
+|+.|-|+
T Consensus 106 dGqpVdgF 113 (304)
T COG3118 106 DGQPVDGF 113 (304)
T ss_pred CCcCcccc
Confidence 99888654
No 320
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=21.81 E-value=2.8e+02 Score=30.55 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHH-HH------Hh-CCCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceEe
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRV-IL------KG-LGVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVFV 318 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~-LL------~~-~gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVFV 318 (423)
.+.|+|+++ .++|..|+ ++. +| +. .++.+...|++.+.....++.+.++ ...+|.+++
T Consensus 474 gK~VlVdF~------A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~----v~g~Pt~~~ 540 (571)
T PRK00293 474 GKPVMLDLY------ADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN----VLGLPTILF 540 (571)
T ss_pred CCcEEEEEE------CCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC----CCCCCEEEE
Confidence 356777765 58999887 332 22 12 2466777888644333345555554 346787664
No 321
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=21.40 E-value=53 Score=26.13 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.2
Q ss_pred eEeCCEEEcchHHHHHH
Q 045109 316 VFVGKKYIGGAEEIRRM 332 (423)
Q Consensus 316 VFVdGe~IGGaDEV~~L 332 (423)
||+||.+||=.++-..|
T Consensus 1 VFlNG~~iG~~~~p~~l 17 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEEL 17 (63)
T ss_dssp EEETTEEEEEESSHHHH
T ss_pred CEECCEEEEEEcCHHHH
Confidence 79999999987664443
No 322
>PRK00420 hypothetical protein; Validated
Probab=21.16 E-value=71 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=22.0
Q ss_pred HHHcccccccCCCCCCCccccccCccce------EeCCCCCCcc
Q 045109 340 KVVEGCEMIDDGGRGNVGACEACGDVRF------VPCETCSGSC 377 (423)
Q Consensus 340 kLL~~~~~~~~~~~g~~~~C~~CGG~rf------VpC~~C~GS~ 377 (423)
-||+++..+ ...|..||..-| +.|+.|+-.-
T Consensus 14 ~Ll~Ga~ml-------~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~~ 50 (112)
T PRK00420 14 LLLKGAKML-------SKHCPVCGLPLFELKDGEVVCPVHGKVY 50 (112)
T ss_pred HHHhHHHHc-------cCCCCCCCCcceecCCCceECCCCCCee
Confidence 355665554 356999998666 6999999843
No 323
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=21.09 E-value=87 Score=30.09 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceEeCCCCCCcceeccccchhhhcccCCCCccccCccceeeCCCCCCCC
Q 045109 366 RFVPCETCSGSCKIYYEKEEEVEEDSEGGWVGEEADFGFQRCPDCNENG 414 (423)
Q Consensus 366 rfVpC~~C~GS~Kv~~~~~~~~~~~~~~~~~~~~~~~~~~RC~~CNENG 414 (423)
.||.|..|+-.--.+..+ +..-+++|-+|..-+
T Consensus 97 ~yV~C~~C~~pdT~l~k~----------------~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 97 EYVICSECGLPDTRLVKE----------------DRVLMLRCDACGAHR 129 (201)
T ss_pred heEECCCCCCCCcEEEEc----------------CCeEEEEcccCCCCc
Confidence 478888887764333321 123467888886543
No 324
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.98 E-value=60 Score=28.31 Aligned_cols=9 Identities=22% Similarity=0.962 Sum_probs=5.6
Q ss_pred ceEeCCCCC
Q 045109 366 RFVPCETCS 374 (423)
Q Consensus 366 rfVpC~~C~ 374 (423)
.++.|+.|+
T Consensus 20 t~f~CP~Cg 28 (99)
T PRK14892 20 KIFECPRCG 28 (99)
T ss_pred cEeECCCCC
Confidence 456666666
No 325
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=20.72 E-value=3.5e+02 Score=22.31 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHH----hC-CCcEEEEECC-CChhhHHHHHHHHcCCCCCCCCCceE
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILK----GL-GVRVDERDLS-MHSGFKNELKELLGDGFSGGGLPRVF 317 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~----~~-gV~yeErDVs-md~~~reEL~~lLg~~tg~~TVPQVF 317 (423)
.+.|+|++ ..++|+.|+ +...|+ .+ ++.+-.+|.+ .. .++.+.++ ...+|.++
T Consensus 18 g~~vlV~F------~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~----~~l~~~~~----V~~~PT~~ 77 (100)
T cd02999 18 EDYTAVLF------YASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK----PSLLSRYG----VVGFPTIL 77 (100)
T ss_pred CCEEEEEE------ECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC----HHHHHhcC----CeecCEEE
Confidence 34466665 458999776 444443 22 3555556654 22 24444443 45788665
No 326
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=1.6e+02 Score=25.47 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCCCCCCCcHHH-HHHHHHhC-----CCcEEEEECCCChhhHHHHHHHHcCCCCCCCCCceE--eCC--
Q 045109 251 KEKLVVYFTSLRGIRKTYEDCCH-VRVILKGL-----GVRVDERDLSMHSGFKNELKELLGDGFSGGGLPRVF--VGK-- 320 (423)
Q Consensus 251 ~~kVVIYtTSLrGIRKT~c~Cc~-VK~LL~~~-----gV~yeErDVsmd~~~reEL~~lLg~~tg~~TVPQVF--VdG-- 320 (423)
...|||++| .+||+=|+ +.-+|+.+ .+.|-..|++. -.++...+ +-..+|.+. .+|
T Consensus 21 ~kliVvdF~------a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~----~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 21 DKLVVVDFY------ATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEF----NVKAMPTFVFYKGGEE 86 (106)
T ss_pred CCeEEEEEE------CCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhc----CceEeeEEEEEECCEE
Confidence 466788775 48997555 55555433 36677888863 22333333 345778654 455
Q ss_pred --EEEcchHH
Q 045109 321 --KYIGGAEE 328 (423)
Q Consensus 321 --e~IGGaDE 328 (423)
+++|..-+
T Consensus 87 ~~~~vGa~~~ 96 (106)
T KOG0907|consen 87 VDEVVGANKA 96 (106)
T ss_pred EEEEecCCHH
Confidence 55565544
No 327
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=20.22 E-value=30 Score=30.83 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCcEEEEECC-CChhhHHHHHHHHc--CCCCCCCCCceEeCCE-EEcchHHHHHHH
Q 045109 272 CHVRVILKGLGVRVDERDLS-MHSGFKNELKELLG--DGFSGGGLPRVFVGKK-YIGGAEEIRRMH 333 (423)
Q Consensus 272 c~VK~LL~~~gV~yeErDVs-md~~~reEL~~lLg--~~tg~~TVPQVFVdGe-~IGGaDEV~~Lh 333 (423)
..+..++...|+..++.+-. .+...++++++-.. ...|-..+|.++|||+ .+-|.+.+..|.
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~ 189 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELE 189 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHH
Confidence 34688888999864443321 23344444444221 1234568999999999 788888776553
No 328
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=20.10 E-value=71 Score=36.07 Aligned_cols=18 Identities=33% Similarity=1.010 Sum_probs=10.2
Q ss_pred ccccccCccceE-eCCCCC
Q 045109 357 GACEACGDVRFV-PCETCS 374 (423)
Q Consensus 357 ~~C~~CGG~rfV-pC~~C~ 374 (423)
..|..|||.+.+ .|..|.
T Consensus 69 ~~c~~c~G~gkv~~c~~cG 87 (715)
T COG1107 69 DTCPECGGTGKVLTCDICG 87 (715)
T ss_pred eecccCCCceeEEeecccc
Confidence 356666666544 355554
No 329
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=20.02 E-value=40 Score=31.58 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCcEEEEECCCC-hhhHHHHHHH--HcCCCCCCCCCceEeCCEEEcchH
Q 045109 273 HVRVILKGLGVRVDERDLSMH-SGFKNELKEL--LGDGFSGGGLPRVFVGKKYIGGAE 327 (423)
Q Consensus 273 ~VK~LL~~~gV~yeErDVsmd-~~~reEL~~l--Lg~~tg~~TVPQVFVdGe~IGGaD 327 (423)
.++.++...|+.-++.+-.++ ..+.+.++.. +....+-..+|.++|||+|+=+..
T Consensus 125 ~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~ 182 (207)
T PRK10954 125 DIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQ 182 (207)
T ss_pred HHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccc
Confidence 367777888876443332111 2233333222 122234568999999999965433
Done!