BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045110
         (376 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast
           Mg2+ Channel Mrs2
          Length = 261

 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 257 ENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQL 306
           +++  +LEML+E Y+ Q D  + +  +L + I  TE+ +NI LD +RN L
Sbjct: 212 KDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261



 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 51 IHARDLRILD-PMLNYPSTILGREKVIVLNLEHIKAIITADEVLLRD 96
          +  RDLR +D   ++   TI+ +   IV+NL HIKA+I  D+V + D
Sbjct: 46 LFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFD 92


>pdb|2IUB|A Chain A, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|B Chain B, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|C Chain C, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|D Chain D, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|E Chain E, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|F Chain F, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|G Chain G, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|H Chain H, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|I Chain I, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution.
 pdb|2IUB|J Chain J, Crystal Structure Of A Divalent Metal Ion Transporter Cora
           At 2.9 A Resolution
          Length = 363

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 269 AYFMQI-DGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVA 327
            YF  + D T+    T+  + D     +++ L +  N+  ++   L          + +A
Sbjct: 261 PYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIA 320

Query: 328 AIFGMNIPYT----WKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGL 373
            I+GMN  Y     WK G+      V+ + G++  ++   ++++ + K L
Sbjct: 321 GIYGMNFEYMPELRWKWGYPV----VLAVMGVIAVIM---VVYFKKKKWL 363


>pdb|2BBJ|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2BBJ|F Chain F, Crystal Structure Of The Cora Mg2+ Transporter
 pdb|2HN2|A Chain A, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|B Chain B, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|C Chain C, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|D Chain D, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
 pdb|2HN2|E Chain E, Crystal Structure Of The Cora Mg2+ Transporter Homologue
           From T. Maritima In Complex With Divalent Cations
          Length = 354

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 269 AYFMQI-DGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVA 327
            YF  + D T+    T+  + D     +++ L +  N+  ++   L          + +A
Sbjct: 252 PYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIA 311

Query: 328 AIFGMNIPYT----WKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGL 373
            I+GMN  Y     WK G+      V+ + G++  ++   ++++ + K L
Sbjct: 312 GIYGMNFEYMPELRWKWGYPV----VLAVMGVIAVIM---VVYFKKKKWL 354


>pdb|4EEB|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EEB|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Absence
 pdb|4EED|A Chain A, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|B Chain B, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|C Chain C, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|D Chain D, Cora Coiled-Coil Mutant Under Mg2+ Presence
 pdb|4EED|E Chain E, Cora Coiled-Coil Mutant Under Mg2+ Presence
          Length = 330

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 269 AYFMQI-DGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVA 327
            YF  + D T+    T+  + D     +++ L +  N+  ++   L          + +A
Sbjct: 228 PYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIA 287

Query: 328 AIFGMNIPYT----WKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGL 373
            I+GMN  Y     WK G+      V+ + G++  ++   ++++ + K L
Sbjct: 288 GIYGMNFEYMPELRWKWGYPV----VLAVMGVIAVIM---VVYFKKKKWL 330


>pdb|3S46|A Chain A, The Crystal Structure Of Alanine Racemase From
           Streptococcus Pneumoniae
 pdb|3S46|B Chain B, The Crystal Structure Of Alanine Racemase From
           Streptococcus Pneumoniae
          Length = 367

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 255 QEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLE 310
           +E ++VE+ + LL+ + + ++G     +T  E   +++DY N QL+  +  L  ++
Sbjct: 140 REASEVEQAQDLLQQHGVCVEGIFTHFATADE---ESDDYFNAQLERFKTILASMK 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,441,847
Number of Sequences: 62578
Number of extensions: 355875
Number of successful extensions: 908
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 9
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)