Query 045110
Match_columns 376
No_of_seqs 235 out of 1458
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 3.2E-79 7E-84 590.4 14.0 355 10-376 51-414 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 1.2E-36 2.5E-41 297.8 3.3 275 24-374 33-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 4.5E-36 9.7E-41 292.9 4.3 283 18-374 21-318 (318)
4 PRK09546 zntB zinc transporter 100.0 2E-34 4.3E-39 282.4 5.1 272 21-374 34-324 (324)
5 PRK11085 magnesium/nickel/coba 100.0 4.3E-31 9.3E-36 256.6 3.0 272 22-374 24-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 100.0 2.9E-30 6.2E-35 247.3 0.4 275 22-370 2-292 (292)
7 COG0598 CorA Mg2+ and Co2+ tra 58.3 3 6.6E-05 40.9 -0.2 106 261-373 212-318 (322)
8 PF10805 DUF2730: Protein of u 57.0 7.7 0.00017 31.8 2.0 56 139-201 40-99 (106)
9 PTZ00382 Variant-specific surf 52.3 8.1 0.00017 31.2 1.4 11 362-372 85-95 (96)
10 PRK15348 type III secretion sy 48.0 3.4 7.4E-05 39.2 -1.6 42 312-353 183-230 (249)
11 PF10267 Tmemb_cc2: Predicted 42.6 16 0.00034 37.2 2.0 27 311-343 346-372 (395)
12 PF10856 DUF2678: Protein of u 42.3 14 0.0003 30.8 1.3 22 309-330 30-51 (118)
13 PF00335 Tetraspannin: Tetrasp 40.1 9.5 0.00021 33.7 0.0 19 313-331 9-27 (221)
14 PF04478 Mid2: Mid2 like cell 38.0 18 0.00039 31.7 1.4 28 344-371 50-77 (154)
15 PF01957 NfeD: NfeD-like C-ter 36.6 12 0.00027 31.4 0.2 23 317-339 22-44 (144)
16 KOG3176 Predicted alpha-helica 35.0 1.6E+02 0.0034 27.4 7.0 86 104-205 26-114 (223)
17 PF11286 DUF3087: Protein of u 34.4 27 0.00059 31.0 2.0 49 317-374 28-76 (165)
18 PF02060 ISK_Channel: Slow vol 33.3 12 0.00026 31.7 -0.4 30 343-372 41-70 (129)
19 KOG4343 bZIP transcription fac 32.0 36 0.00079 35.6 2.7 79 257-340 301-384 (655)
20 KOG3091 Nuclear pore complex, 31.7 1.5E+02 0.0032 31.0 6.9 30 171-200 373-402 (508)
21 PRK09546 zntB zinc transporter 31.5 6.6 0.00014 38.5 -2.7 34 303-339 263-298 (324)
22 KOG1853 LIS1-interacting prote 31.3 1E+02 0.0022 29.5 5.2 69 139-207 50-124 (333)
23 PF08693 SKG6: Transmembrane a 31.3 64 0.0014 21.8 2.9 6 363-368 29-34 (40)
24 PF04971 Lysis_S: Lysis protei 31.0 28 0.00061 26.3 1.3 54 314-372 6-59 (68)
25 TIGR02230 ATPase_gene1 F0F1-AT 30.5 13 0.00028 30.3 -0.6 28 312-339 44-71 (100)
26 TIGR02132 phaR_Bmeg polyhydrox 30.2 40 0.00087 30.3 2.3 55 142-201 80-134 (189)
27 PF05591 DUF770: Protein of un 30.2 54 0.0012 28.9 3.1 38 172-209 110-150 (157)
28 PLN00205 ribisomal protein L13 29.8 67 0.0015 29.3 3.7 66 13-90 4-69 (191)
29 PRK13182 racA polar chromosome 27.9 78 0.0017 28.4 3.8 54 147-200 91-144 (175)
30 PF02656 DUF202: Domain of unk 26.9 23 0.0005 26.5 0.2 17 357-373 57-73 (73)
31 PF10224 DUF2205: Predicted co 26.7 1.1E+02 0.0023 24.0 3.9 44 171-215 20-63 (80)
32 PF07765 KIP1: KIP1-like prote 26.0 1.5E+02 0.0032 22.8 4.5 23 177-199 14-36 (74)
33 TIGR03358 VI_chp_5 type VI sec 24.5 62 0.0013 28.7 2.5 38 172-209 111-151 (159)
34 PRK13682 hypothetical protein; 23.4 39 0.00084 24.1 0.8 17 316-332 4-20 (51)
35 PF10577 UPF0560: Uncharacteri 22.6 44 0.00096 36.8 1.4 25 349-373 278-302 (807)
36 PF15102 TMEM154: TMEM154 prot 22.1 84 0.0018 27.4 2.8 32 342-373 53-85 (146)
37 PF05377 FlaC_arch: Flagella a 22.1 99 0.0022 22.4 2.7 26 176-201 16-41 (55)
38 COG5570 Uncharacterized small 21.4 1.2E+02 0.0026 21.7 2.9 46 144-194 8-53 (57)
39 PF00746 Gram_pos_anchor: Gram 21.3 31 0.00068 22.5 0.0 11 361-371 29-39 (39)
40 TIGR01167 LPXTG_anchor LPXTG-m 20.8 76 0.0016 19.8 1.7 9 363-371 24-32 (34)
41 KOG3684 Ca2+-activated K+ chan 20.4 1.8E+02 0.004 30.1 5.2 105 168-304 383-487 (489)
42 PF07043 DUF1328: Protein of u 20.2 70 0.0015 21.5 1.5 14 319-332 2-15 (39)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-79 Score=590.38 Aligned_cols=355 Identities=61% Similarity=0.865 Sum_probs=317.6
Q ss_pred cCccchhhhcccccceeEEEeccCCcccccchhhHHhhhhhcccccccccccCCCCCcccccccceEEeecchhhhhhcc
Q 045110 10 AVDQSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITA 89 (376)
Q Consensus 10 ~~~~~~~~~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilvnle~i~~II~~ 89 (376)
+.+.++.++++.++++|++||.+|+++..+++|+.|+++.||+|||||++||+++|+++|+.||+|||+|+|||||||++
T Consensus 51 ~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIIta 130 (414)
T KOG2662|consen 51 IDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITA 130 (414)
T ss_pred ccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeeh
Confidence 34555888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcchhHHHHHhhhcCCCCCc--cCCCCcccCCCCccCcch-------hhhhhhhhhhhccccccccccc
Q 045110 90 DEVLLRDPMDDNVIPIVEQLQRRLASDYPIS--QGQGEEEDNHPGVRNNFE-------TEAICSFLDARTRELETDAYPA 160 (376)
Q Consensus 90 d~vl~f~~~~~~~~~f~~~L~~rL~~~~~~~--~~~~~~~~~~~~~~LpfE-------Leav~~~l~~~~~~Le~~~~~~ 160 (376)
|+|++|++.++ +.++.+++++|+...+... |.++++. ..+.+||| |+++|+.|++++.+||..++++
T Consensus 131 eeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~---~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~ 206 (414)
T KOG2662|consen 131 DEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQLSSDGG---SKDELPFEFRALEVALEAACSFLDSRLSELETEAYPL 206 (414)
T ss_pred hheeEeccccc-cchHHHHHHHHhcccccccccccCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877 8899999999998765421 1111111 23799999 6678999999999999999999
Q ss_pred hHHHhhhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhhhccccCCCCCCCCCcccccCCCccc
Q 045110 161 LDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGS 240 (376)
Q Consensus 161 ld~L~~~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
||+|+.++++.+|++|+.+|++|++|.++|+++||+|++|||||+||++||||+|+.+.++ +.|.|..|+..+
T Consensus 207 LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~-------~~~~~~sp~~~~ 279 (414)
T KOG2662|consen 207 LDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS-------PESAPTSPTIKA 279 (414)
T ss_pred HHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc-------cccCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999876653 456666677766
Q ss_pred ccccccccccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceeh
Q 045110 241 KISRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCL 320 (376)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~ 320 (376)
..+++++....+....++++||+|||||+||+|+|++.+++++++++|++|||+++++||++||++|+++++||+.|+++
T Consensus 280 ~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~ 359 (414)
T KOG2662|consen 280 GISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCL 359 (414)
T ss_pred CccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 66654322222222238899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhccCCCC
Q 045110 321 SVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLVGS 376 (376)
Q Consensus 321 ~~~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~wl~~ 376 (376)
+.+++|||+||||+++.+|+ .+|+|+||++++.++|+++|++.++|+|+||.++.
T Consensus 360 s~~~~va~ifGMNl~~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~~ 414 (414)
T KOG2662|consen 360 SVFSVVAGIFGMNLPSSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRLLGL 414 (414)
T ss_pred HHHHHHHHHhcCCccchhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999998 78999999999999999999999999999998763
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=297.83 Aligned_cols=275 Identities=18% Similarity=0.239 Sum_probs=226.2
Q ss_pred ceeEEEeccCCcccccchhhHHhhhhhcccccccccccCCCCCcccccccceE--Ee------------ecchhhhhhcc
Q 045110 24 SSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVI--VL------------NLEHIKAIITA 89 (376)
Q Consensus 24 ~~w~~id~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~I--lv------------nle~i~~II~~ 89 (376)
..|+.++..+..+. ..+.+.+|+|+..+..+... +++|++...++.. ++ ..++++.+++.
T Consensus 33 ~~Widl~~p~~~e~-----~~l~~~~~l~~~~~ed~~~~-~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~~ 106 (322)
T COG0598 33 FVWIDLVEPDDEEL-----EWLAKTFGLHPLALEDLLDA-EQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVGK 106 (322)
T ss_pred eEEEECCCCCHHHH-----HHHHHhcCCCcchHHHHhCc-ccCCceEeeCCEEEEEEEeeccccccccccceeEEEEEeC
Confidence 66999877766443 56778899999999986653 7888999888643 22 25578899999
Q ss_pred ccccccCCCCCCcchhHHHHHhhhcCCCCCccCCCCcccCCCCccCcch-hhhhhhhhhhhccccccccccchHHHhhhh
Q 045110 90 DEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFE-TEAICSFLDARTRELETDAYPALDELTSKI 168 (376)
Q Consensus 90 d~vl~f~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~LpfE-Leav~~~l~~~~~~Le~~~~~~ld~L~~~~ 168 (376)
+.+++++..+. +.++.++.|+..+.. ... +++++.|. +|++++.+...++.+++++..+.+.+..+.
T Consensus 107 ~~liT~r~~~~---~~~~~vr~r~~~~~~--~~~-------~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~ 174 (322)
T COG0598 107 RRLITIRHRPL---PAFDRVRERLEKGTL--LTR-------GADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLAST 174 (322)
T ss_pred CEEEEEecCCC---ccHHHHHHHHhcccc--ccC-------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999998543 578999999987521 111 45788888 999999999999999999998888888877
Q ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhhhccccCCCCCCCCCcccccCCCccccccccccc
Q 045110 169 SSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRTISR 248 (376)
Q Consensus 169 ~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (376)
....+++|..+++.+..+++.+++.++++..+.+.+.+..
T Consensus 175 ~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~---------------------------------------- 214 (322)
T COG0598 175 TNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL---------------------------------------- 214 (322)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccC----------------------------------------
Confidence 7789999999999999999999999999999988765410
Q ss_pred ccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceehhHHHHHHH
Q 045110 249 GSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAA 328 (376)
Q Consensus 249 ~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~~~t~IaG 328 (376)
.++....++.-+.++..+.+.++.+++.++.+.+.+...+++++|++|| +||++|++|+|+|+|||
T Consensus 215 -----------~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk---~LTi~s~iflPpTlIag 280 (322)
T COG0598 215 -----------SEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMK---ILTIVSTIFLPPTLITG 280 (322)
T ss_pred -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHc
Confidence 0222333444445556778888999999999999999999999999999 69999999999999999
Q ss_pred HhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhccCC
Q 045110 329 IFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLV 374 (376)
Q Consensus 329 ifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~wl 374 (376)
+|||||++|||++|+||||++++ +|+++++++++||||||||
T Consensus 281 iyGMNf~~mPel~~~~Gy~~~l~----~m~~~~~~~~~~frrk~Wl 322 (322)
T COG0598 281 FYGMNFKGMPELDWPYGYPIALI----LMLLLALLLYLYFRRKGWL 322 (322)
T ss_pred ccccCCCCCcCCCCcccHHHHHH----HHHHHHHHHHHHHHhcCcC
Confidence 99999999999999999998887 4445567789999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=4.5e-36 Score=292.87 Aligned_cols=283 Identities=18% Similarity=0.252 Sum_probs=219.4
Q ss_pred hcccccceeEEEeccCCcccccchhhHHhhhhhcccccccccccCCCCCcccccccceEEe-------------ecchhh
Q 045110 18 KKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVL-------------NLEHIK 84 (376)
Q Consensus 18 ~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilv-------------nle~i~ 84 (376)
....++..|+.+....+.+.+ ..+.+.+|+|+..+..+... ..+|++...++...+ ..+++.
T Consensus 21 ~~~~~~~~Widl~~p~~~e~~----~~l~~~~~l~~~~~ed~~~~-~~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~ 95 (318)
T TIGR00383 21 SQELNTVLWIDLIEPTDEETL----AKLGQFFAIHPLALEDILNS-PQRPKVEEDEDHLFIISFFLNEDEDDTFETEQVS 95 (318)
T ss_pred cCCCCceEEEEccCCCcHHHH----HHHHHHcCcCcchHHHhhCC-CCCCcEEEECCEEEEEEEeeeccCCCcceeEEEE
Confidence 456677889998776665544 67888999999988876542 466677666654422 335778
Q ss_pred hhhccccccccCCCCCCcchhHHHHHhhhcCCCCCccCCCCcccCCCCccCcch-hhhhhhhhhhhccccccccccchHH
Q 045110 85 AIITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFE-TEAICSFLDARTRELETDAYPALDE 163 (376)
Q Consensus 85 ~II~~d~vl~f~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~LpfE-Leav~~~l~~~~~~Le~~~~~~ld~ 163 (376)
.+++.+.++++.+.+. +.++.+++++....... .. ++..+.|. |+++++.+...++.+++++..+.+.
T Consensus 96 ~~l~~~~liTv~~~~~---~~~~~~~~~~~~~~~~~-~~-------~~~~ll~~il~~ivd~~~~~l~~l~~~~~~le~~ 164 (318)
T TIGR00383 96 FILGKNLLFTIHEREL---PAFDSIRERIRTSQKVF-EK-------GADYLLYDIFDAIIDSYFPLLENIEDELEELEDE 164 (318)
T ss_pred EEEECCEEEEEEcCCC---CcHHHHHHHHHhCchhh-hC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 8999999999987653 46788888876543111 10 23556777 9999999999999999998888888
Q ss_pred HhhhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCc-chhhhHHhhhhccccCCCCCCCCCcccccCCCccccc
Q 045110 164 LTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDD-DMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKI 242 (376)
Q Consensus 164 L~~~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~-dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (376)
+.+......++++..+|+++..+++.+.+.+++++.+.+.+. ...
T Consensus 165 l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~---------------------------------- 210 (318)
T TIGR00383 165 IISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQ---------------------------------- 210 (318)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC----------------------------------
Confidence 877666778999999999999999999999999999976542 110
Q ss_pred ccccccccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceehhH
Q 045110 243 SRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSV 322 (376)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~~ 322 (376)
.++....++.-..+++.+.+.++.+++.++.+.+.+....++++|++|| +||++|++|+|
T Consensus 211 -----------------~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk---~LTvvt~IflP 270 (318)
T TIGR00383 211 -----------------TEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMK---ILTVVSTIFIP 270 (318)
T ss_pred -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 0111112222233356778888899999999999999999999999999 69999999999
Q ss_pred HHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhccCC
Q 045110 323 YSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLV 374 (376)
Q Consensus 323 ~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~wl 374 (376)
+|+|||+|||||++|||.+|+|||++++++ |+++++++++||||||||
T Consensus 271 ~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~----m~~i~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 271 LTFIAGIYGMNFKFMPELNWKYGYPAVLIV----MAVIALGPLIYFRRKGWL 318 (318)
T ss_pred HHHHHHHHhCCcccCccccchhHHHHHHHH----HHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999988874 445556789999999997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=2e-34 Score=282.40 Aligned_cols=272 Identities=11% Similarity=0.113 Sum_probs=199.9
Q ss_pred cccceeEEEeccCCcccccchhhHHhhhhhcccccccccccCCCCCcccccccceEEee--------------cchhhhh
Q 045110 21 AVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLN--------------LEHIKAI 86 (376)
Q Consensus 21 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilvn--------------le~i~~I 86 (376)
.+...|+.++.....+ . ..|.+ .+.++..+..-....+++|++...++.+.+. ..+++.+
T Consensus 34 ~~~~~Wi~l~~~~~~e-~----~~L~~-~~~~~~~~~d~l~~~~~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~~~ 107 (324)
T PRK09546 34 EAHPCWLHLDYTHPDS-A----QWLAT-TPLLPDNVRDALAGESTRPRVSRLGEGTLITLRCINGNTDERPDQLVAMRVY 107 (324)
T ss_pred CCCCEEEEeCCCChhH-H----HHHHh-cCCCCHHHHHHHhCCCCCCcEEEECCEEEEEEEeccCCCCCChhheEEEEEE
Confidence 3567899996543332 2 33333 3555554443322224678888887765332 1237889
Q ss_pred hccccccccCCCCCCcchhHHHHHhhhcCCCCCccCCCCcccCCCCccCcch-hhhhhhhhhhhccccccccccchHHHh
Q 045110 87 ITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFE-TEAICSFLDARTRELETDAYPALDELT 165 (376)
Q Consensus 87 I~~d~vl~f~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~LpfE-Leav~~~l~~~~~~Le~~~~~~ld~L~ 165 (376)
++.|+++++...+. ++++.+++++..+.+.. .+..+.|. |+++++.+...++.+++++..+++.+.
T Consensus 108 l~~~~lITv~~~~~---~~~~~~~~~~~~~~~~~----------~~~~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~ 174 (324)
T PRK09546 108 ITDRLIVSTRHRKV---LALDDVVSDLQEGTGPT----------DCGGWLVDVCDALTDHASEFIEELHDKIIDLEDNLL 174 (324)
T ss_pred EeCCEEEEEecCCc---ccHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987654 57889988886543211 12345566 899999999999999988888777775
Q ss_pred hhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhhhccccCCCCCCCCCcccccCCCcccccccc
Q 045110 166 SKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRT 245 (376)
Q Consensus 166 ~~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (376)
+..+ ..+++|..+|+++.++++.+.|.++++.++.+.+... ++
T Consensus 175 ~~~~-~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~----~~-------------------------------- 217 (324)
T PRK09546 175 DQQI-PPRGELALLRKQLIVMRRYMAPQRDVFARLASERLPW----MS-------------------------------- 217 (324)
T ss_pred cCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cC--------------------------------
Confidence 5322 2467999999999999999999999999998643211 00
Q ss_pred cccccceeecCcCCHHHHHHHHHHHHhhh----cccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceehh
Q 045110 246 ISRGSMETTQEENDVEELEMLLEAYFMQI----DGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLS 321 (376)
Q Consensus 246 ~~~~~~~~~~~~~~~eelE~LLE~y~~~~----~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~ 321 (376)
++ ...||+|+ ..+.+.++.+++..+.+.+.+...++++.|++|| +||++|++|+
T Consensus 218 ---------------~~----~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~---~Ltilt~Ifl 275 (324)
T PRK09546 218 ---------------DD----DRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTY---TMSLMAMVFL 275 (324)
T ss_pred ---------------hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 01 13466664 3455667777777778888899999999999999 6999999999
Q ss_pred HHHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhccCC
Q 045110 322 VYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLV 374 (376)
Q Consensus 322 ~~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~wl 374 (376)
|+|||||+|||||++|||.+|+||||++++ +|+++++++++||||||||
T Consensus 276 PlT~IaGiyGMNf~~mPel~~~~gy~~~l~----im~~i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 276 PTTFLTGLFGVNLGGIPGGGWPFGFSIFCL----LLVVLIGGVAWWLKRSKWL 324 (324)
T ss_pred HHHHHHhhhccccCCCCCcCCcchHHHHHH----HHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999987776 4455667789999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.96 E-value=4.3e-31 Score=256.56 Aligned_cols=272 Identities=13% Similarity=0.138 Sum_probs=198.2
Q ss_pred ccceeEEEeccCCcccccchhhHHhhhhhcc---cccccccccCCCCCcccccccceEEe-------------ecchhhh
Q 045110 22 VSSSWILLDREAQSTTLDVDKHVIMRRVQIH---ARDLRILDPMLNYPSTILGREKVIVL-------------NLEHIKA 85 (376)
Q Consensus 22 ~~~~w~~id~~g~~~~~~~~k~~l~~~~~L~---~RDlr~ld~~~~~~~~I~~R~~~Ilv-------------nle~i~~ 85 (376)
....|+-+..... +.. ..+.+.+|++ ..|+..|..+ |.+...++++.+ ..+.|..
T Consensus 24 ~~~vWiDl~~Pt~-eE~----~~v~~~~gl~~pt~~~~eeIe~s----sR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 94 (316)
T PRK11085 24 VDAVWIDLVEPDD-DER----LRVQSELGQSLATRPELEDIEAS----ARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAF 94 (316)
T ss_pred CCCEEEEcCCCCH-HHH----HHHHHHhCCCCCChhhHHHHhhC----ceEEEECCeEEEEEEEEecCCCCCccceeEEE
Confidence 3678988855533 222 5677889999 7777776653 445444444433 3346788
Q ss_pred hhccccccccCCCCCCcchhHHHHHhhhcCCCCCccCCCCcccCCCCccCcch-hhhhhhhhhhhccccccccccchHHH
Q 045110 86 IITADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFE-TEAICSFLDARTRELETDAYPALDEL 164 (376)
Q Consensus 86 II~~d~vl~f~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~LpfE-Leav~~~l~~~~~~Le~~~~~~ld~L 164 (376)
|++.|+++++...++ +.|..+++|++.+.. ... ++.++.+. ||++++.+.+.++.++.+++.+...+
T Consensus 95 il~~~~LvTvr~~~~---~~f~~~~~r~~~~~~-~~~--------~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~i 162 (316)
T PRK11085 95 TIRDGRLFTLREREL---PAFRLYRMRARSQTL-VDG--------NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVI 162 (316)
T ss_pred EEECCEEEEEecCCc---chHHHHHHHHHhCCc-ccC--------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 999999999998865 468899999865421 011 23455566 89998888887777777765555444
Q ss_pred hhhhc----ccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhhhccccCCCCCCCCCcccccCCCccc
Q 045110 165 TSKIS----SRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGS 240 (376)
Q Consensus 165 ~~~~~----~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
..+.. .+.+++|.++++.+..++..+.++++++..+.+... .
T Consensus 163 f~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~-~--------------------------------- 208 (316)
T PRK11085 163 MEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKAR-L--------------------------------- 208 (316)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-C---------------------------------
Confidence 43221 134556667777777777777777777777653200 0
Q ss_pred ccccccccccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceeh
Q 045110 241 KISRTISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCL 320 (376)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~ 320 (376)
..+..+. +..+++|++.+.+.++.+.+.+..+.+.+...+++++|++|| +||++|++|
T Consensus 209 ------------------~~~~~~~-~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk---~lTv~s~if 266 (316)
T PRK11085 209 ------------------PGGQLEQ-AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIK---IFSVVSVVF 266 (316)
T ss_pred ------------------ChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHH
Confidence 0011122 468899999999999999999999999999999999999999 699999999
Q ss_pred hHHHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhccCC
Q 045110 321 SVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLV 374 (376)
Q Consensus 321 ~~~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~wl 374 (376)
+|+|+|||+|||||++|||.+|+|||+++++++ +++++++++||||||||
T Consensus 267 ~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~----~~~~~~~~~~f~rk~Wl 316 (316)
T PRK11085 267 LPPTLVASSYGMNFEFMPELKWSFGYPGAIILM----ILAGLAPYLYFKRKNWL 316 (316)
T ss_pred HHHHHHHhhcccccCCCCCCCCcHHHHHHHHHH----HHHHHHHHHHHHHcccC
Confidence 999999999999999999999999998877633 34456789999999997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.95 E-value=2.9e-30 Score=247.30 Aligned_cols=275 Identities=19% Similarity=0.255 Sum_probs=207.6
Q ss_pred ccceeEEEeccCCcccccchhhHHhhhhhcccccccccccCCCCCcccccccceEEeecc--------------hhhhhh
Q 045110 22 VSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLE--------------HIKAII 87 (376)
Q Consensus 22 ~~~~w~~id~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilvnle--------------~i~~II 87 (376)
+...|+.++...+. .. ..|.+++|+|+..+..+... ..+|++...++++.+.+. ++..++
T Consensus 2 ~~~~Wi~~~~~~~~-~~----~~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 75 (292)
T PF01544_consen 2 DGFVWIDLSGPDDE-EL----EWLAEEFGLHPLTIEDALDP-EERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFIL 75 (292)
T ss_dssp SS-EEEEEETTTCH-HH----HHHHHTTTS-HHHHHHHCCT-SSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEEE
T ss_pred CccEEEEEeCCCHH-HH----HHHHHHhCcCHhHHHHHhCC-CcCCEEEEECCeEEEEEEEcchhhcccccccceEEEEE
Confidence 46789999887775 33 66788899999998855542 577788877776644322 468899
Q ss_pred ccccccccCCCCCCcchhHHHHHhhhcCCCCCccCCCCcccCCCCccCcch-hhhhhhhhhhhccccccccccchHHHhh
Q 045110 88 TADEVLLRDPMDDNVIPIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFE-TEAICSFLDARTRELETDAYPALDELTS 166 (376)
Q Consensus 88 ~~d~vl~f~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~LpfE-Leav~~~l~~~~~~Le~~~~~~ld~L~~ 166 (376)
+.+.+++++..+. ++++.+.+++....... . ++..+.|. ++.+++.+...++.+++.+..+.+.+.+
T Consensus 76 ~~~~lit~~~~~~---~~~~~~~~~~~~~~~~~--~-------~~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~ 143 (292)
T PF01544_consen 76 GDNFLITVHRDPL---PFIDELRERLESRNERP--S-------SPEDLLYAILDEIVDDYFEVLEELEDELDELEDELDD 143 (292)
T ss_dssp ETTEEEEEESSSS---HCHHHHHHHHHSTTCSC--S-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred ecceEEEEECCCC---hHHHHHHHHhhccCCCC--C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999998753 67888999887221110 0 23445555 8888888888888888888888888866
Q ss_pred hhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcC-CCcchhhhHHhhhhccccCCCCCCCCCcccccCCCcccccccc
Q 045110 167 KISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLD-DDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRT 245 (376)
Q Consensus 167 ~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~-dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (376)
......+.++..+|+++..+++.+.+.++++.++++ ++...
T Consensus 144 ~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~-------------------------------------- 185 (292)
T PF01544_consen 144 RPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPF-------------------------------------- 185 (292)
T ss_dssp TTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTT--------------------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh--------------------------------------
Confidence 777788999999999999999999999999988775 22111
Q ss_pred cccccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceehhHHHH
Q 045110 246 ISRGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSL 325 (376)
Q Consensus 246 ~~~~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~~~t~ 325 (376)
..++....++....++..+.+.++.+++.++++.+.+...++.++|+.|+ +||++|++|.|+||
T Consensus 186 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~---~LT~~t~iflPlt~ 249 (292)
T PF01544_consen 186 -------------ISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMK---VLTIVTAIFLPLTF 249 (292)
T ss_dssp -------------SHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH---HHHHHHHHHHHHHH
T ss_pred -------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 01112223566667778889999999999999999999999999999999 69999999999999
Q ss_pred HHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhh
Q 045110 326 VAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARH 370 (376)
Q Consensus 326 IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkr 370 (376)
|||+|||||.++|+.+++|||+++++ +++++++++++++||||
T Consensus 250 i~g~fGMN~~~~p~~~~~~g~~~~~~--~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 250 ITGIFGMNFKGMPELDWPYGYFFVII--LGLMILVAILLYWWFKR 292 (292)
T ss_dssp HTTSTTS-SS---SSSSSS-SHHH----HHHHHHHHHHHHCCTTS
T ss_pred HHHHhhCCccCCCccCCccHHHHHHH--HHHHHHHHHHHHHheeC
Confidence 99999999999999999998877643 33556677788888886
No 7
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=58.31 E-value=3 Score=40.93 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhh-cccchhhhhhhhhhcCcccceeeeccccccceeEEEEEeeccceehhHHHHHHHHhccCcceeee
Q 045110 261 EELEMLLEAYFMQI-DGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLCSGTVCLSVYSLVAAIFGMNIPYTWK 339 (376)
Q Consensus 261 eelE~LLE~y~~~~-~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~~~t~IaGifGMN~~~~pe 339 (376)
+....-...|++++ +++.+..+.+..+.+.+..+.+..++...|++++ ++-++|.+-+++.-.|=+.|-= -|-.
T Consensus 212 ~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~---imk~LTi~s~iflPpTlIagiy--GMNf 286 (322)
T COG0598 212 DWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNE---IMKILTIVSTIFLPPTLITGFY--GMNF 286 (322)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHccc--ccCC
Confidence 45555678899997 6888888888888888999999999999999999 8888877777777777777741 1222
Q ss_pred cCCceEEEEeeeehhHHHHHHHHHHHHHhhhccC
Q 045110 340 TGHGYVFKWVVVITGIVCALLFSIIIFYARHKGL 373 (376)
Q Consensus 340 ~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~w 373 (376)
..-| +.-|-.| --++++++++..++.+.+=|+
T Consensus 287 ~~mP-el~~~~G-y~~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 287 KGMP-ELDWPYG-YPIALILMLLLALLLYLYFRR 318 (322)
T ss_pred CCCc-CCCCccc-HHHHHHHHHHHHHHHHHHHHh
Confidence 2124 2223333 234777777677666665443
No 8
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.05 E-value=7.7 Score=31.85 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=26.9
Q ss_pred hhhhhhhhhhhccccccccccchHHHhhhhcccchhHHH----hhHHHHHHHHHHHHHHHHHHHhhc
Q 045110 139 TEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVR----KLKSAMTRLTNRVQKVRDELEQLL 201 (376)
Q Consensus 139 Leav~~~l~~~~~~Le~~~~~~ld~L~~~~~~~~L~~l~----~lK~~L~~l~~~v~~vre~l~~lL 201 (376)
|+.-.+..+.++..+|.. +..-++.+.+.+|+ .++.++..+..+++++...++-|+
T Consensus 40 l~~~~~~~~~Rl~~lE~~-------l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETK-------LEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555554 33445555443332 444455555555555544444444
No 9
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=52.31 E-value=8.1 Score=31.20 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=4.7
Q ss_pred HHHHHHhhhcc
Q 045110 362 SIIIFYARHKG 372 (376)
Q Consensus 362 ~~~~~~fkrk~ 372 (376)
++.|||++|||
T Consensus 85 ~l~w~f~~r~k 95 (96)
T PTZ00382 85 FLCWWFVCRGK 95 (96)
T ss_pred HHhheeEEeec
Confidence 33444444443
No 10
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=48.01 E-value=3.4 Score=39.22 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=23.8
Q ss_pred EeeccceehhHHHHHHH-HhccCcceeeecC---C--ceEEEEeeeeh
Q 045110 312 FLCSGTVCLSVYSLVAA-IFGMNIPYTWKTG---H--GYVFKWVVVIT 353 (376)
Q Consensus 312 ~Lti~t~i~~~~t~IaG-ifGMN~~~~pe~~---~--~~gf~~v~~~~ 353 (376)
+.+-++.-++|++.-.- |+|||+.+.+-.. | .|+|+.+++++
T Consensus 183 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (249)
T PRK15348 183 LMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLT 230 (249)
T ss_pred EecCCccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 44555555666544443 8999998766541 2 35554444433
No 11
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.58 E-value=16 Score=37.15 Aligned_cols=27 Identities=37% Similarity=0.176 Sum_probs=13.7
Q ss_pred EEeeccceehhHHHHHHHHhccCcceeeecCCc
Q 045110 311 LFLCSGTVCLSVYSLVAAIFGMNIPYTWKTGHG 343 (376)
Q Consensus 311 l~Lti~t~i~~~~t~IaGifGMN~~~~pe~~~~ 343 (376)
+.||++++++...+.++++ . +|...++
T Consensus 346 llL~l~~vlLv~vSt~~~~-----~-~Pl~~tR 372 (395)
T PF10267_consen 346 LLLTLLTVLLVFVSTVANC-----P-LPLTRTR 372 (395)
T ss_pred HHHHHHHHHHHHHHHHhcC-----C-cHHhhcc
Confidence 3556665555554444433 2 5555455
No 12
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=42.35 E-value=14 Score=30.84 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=16.8
Q ss_pred EEEEeeccceehhHHHHHHHHh
Q 045110 309 LELFLCSGTVCLSVYSLVAAIF 330 (376)
Q Consensus 309 ~~l~Lti~t~i~~~~t~IaGif 330 (376)
+++.+.++|.++...|+|.|+|
T Consensus 30 inliiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 30 INLIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred EEeehHHHHHHHHHHHHhheEE
Confidence 3447888888888888887764
No 13
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=40.11 E-value=9.5 Score=33.68 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=0.0
Q ss_pred eeccceehhHHHHHHHHhc
Q 045110 313 LCSGTVCLSVYSLVAAIFG 331 (376)
Q Consensus 313 Lti~t~i~~~~t~IaGifG 331 (376)
++++.++++...+.+|+|.
T Consensus 9 ~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 9 LNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444554445556665
No 14
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.98 E-value=18 Score=31.72 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=12.2
Q ss_pred eEEEEeeeehhHHHHHHHHHHHHHhhhc
Q 045110 344 YVFKWVVVITGIVCALLFSIIIFYARHK 371 (376)
Q Consensus 344 ~gf~~v~~~~~~~~~~i~~~~~~~fkrk 371 (376)
-....++++.+.+.+++.+++|+||+|+
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~ 77 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRR 77 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEec
Confidence 3555566544433333333333444433
No 15
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=36.60 E-value=12 Score=31.37 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred ceehhHHHHHHHHhccCcceeee
Q 045110 317 TVCLSVYSLVAAIFGMNIPYTWK 339 (376)
Q Consensus 317 t~i~~~~t~IaGifGMN~~~~pe 339 (376)
-..++..++++|+++.-....+.
T Consensus 22 l~~~gi~~~~~g~~~~~~~~~~~ 44 (144)
T PF01957_consen 22 LGWGGIAAFIAGLLGLFFPDLPG 44 (144)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 33455566788888877654433
No 16
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=35.00 E-value=1.6e+02 Score=27.41 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=50.1
Q ss_pred hhHHHHHhhhcCCCCCccCCCCcccCCCCccCcch---hhhhhhhhhhhccccccccccchHHHhhhhcccchhHHHhhH
Q 045110 104 PIVEQLQRRLASDYPISQGQGEEEDNHPGVRNNFE---TEAICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLK 180 (376)
Q Consensus 104 ~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~LpfE---Leav~~~l~~~~~~Le~~~~~~ld~L~~~~~~~~L~~l~~lK 180 (376)
+.++.|..-..+... .+.-|||+ +|.+.+.++..-+.+|..+... .|...+-.-.|+|++-+-
T Consensus 26 ~~le~L~~aW~NEk~------------APeLLp~~~elve~~ldqIe~~eE~i~~~a~~~--dlr~~~~qmELERvkfvl 91 (223)
T KOG3176|consen 26 EDLEDLETAWQNEKC------------APELLPYALELVERLLDQIEHMEETIERKASNK--DLRVSLHQMELERVKFVL 91 (223)
T ss_pred HHHHHHHHHHhhhcc------------ChhhcCChHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHH
Confidence 345666665554322 35789999 5666666665555555333221 244445555677776443
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc
Q 045110 181 SAMTRLTNRVQKVRDELEQLLDDDD 205 (376)
Q Consensus 181 ~~L~~l~~~v~~vre~l~~lL~dd~ 205 (376)
+. +++-|++++-.-..++|+.++
T Consensus 92 rS--YlRcRL~KIekf~~~~ln~ee 114 (223)
T KOG3176|consen 92 RS--YLRCRLQKIEKFLQHILNQEE 114 (223)
T ss_pred HH--HHHHHHHHHHhhhHHhhcchh
Confidence 32 566777777777777776665
No 17
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.41 E-value=27 Score=31.03 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=29.4
Q ss_pred ceehhHHHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhccCC
Q 045110 317 TVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKGLV 374 (376)
Q Consensus 317 t~i~~~~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~wl 374 (376)
.+.++..+....+|| .+ +..-|+|=++|.+ +++++.++.+..+|.+-|+
T Consensus 28 i~sl~~s~llI~lFg-------~~-~~~nf~~NllGVi-l~~~~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 28 ILSLAFSQLLIALFG-------GE-SGGNFHWNLLGVI-LGLLLTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHcC-------CC-CCCceeeeHHHHH-HHHHHHHHHHHHHccChHH
Confidence 344455666777888 22 2224666554444 4445556666689988886
No 18
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=33.27 E-value=12 Score=31.69 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=22.4
Q ss_pred ceEEEEeeeehhHHHHHHHHHHHHHhhhcc
Q 045110 343 GYVFKWVVVITGIVCALLFSIIIFYARHKG 372 (376)
Q Consensus 343 ~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~ 372 (376)
.+.|.+++.++++.+++++.+|+.|.|-||
T Consensus 41 ~~~~lYIL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 41 DNEYLYILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp SSTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777778888889999998765
No 19
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=32.01 E-value=36 Score=35.65 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCccc-ceeeec--cccccceeEEEEEeeccceehhHHHHHHHHhc--
Q 045110 257 ENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTED-YINIQL--DNHRNQLIQLELFLCSGTVCLSVYSLVAAIFG-- 331 (376)
Q Consensus 257 ~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~-~~~~~l--~~~~N~~m~~~l~Lti~t~i~~~~t~IaGifG-- 331 (376)
.+-..-+|+-|.+.+.+.+.+-..=.+|+.+++.++. --...+ -..||+-. .-.+.+|+..++||+-.||
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~p 375 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGSP 375 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCccccccc-----chhhhhHHHHHHHHHHhccCc
Confidence 4456778888888888888877777777777766442 111111 22344332 2467788888999999999
Q ss_pred cCcceeeec
Q 045110 332 MNIPYTWKT 340 (376)
Q Consensus 332 MN~~~~pe~ 340 (376)
||+.+.++.
T Consensus 376 ~ni~nnln~ 384 (655)
T KOG4343|consen 376 MNILNNLNI 384 (655)
T ss_pred ccccCCccc
Confidence 999887765
No 20
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.66 E-value=1.5e+02 Score=30.98 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=22.8
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 045110 171 RNLDRVRKLKSAMTRLTNRVQKVRDELEQL 200 (376)
Q Consensus 171 ~~L~~l~~lK~~L~~l~~~v~~vre~l~~l 200 (376)
+..-+|.++|+++.+|.+|+-.|--.++-+
T Consensus 373 d~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 373 DAVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899999999999998876555543
No 21
>PRK09546 zntB zinc transporter; Reviewed
Probab=31.51 E-value=6.6 Score=38.48 Aligned_cols=34 Identities=6% Similarity=-0.137 Sum_probs=15.6
Q ss_pred ccceeEEEEEeeccceehhHHHHHHHHh--ccCcceeee
Q 045110 303 RNQLIQLELFLCSGTVCLSVYSLVAAIF--GMNIPYTWK 339 (376)
Q Consensus 303 ~N~~m~~~l~Lti~t~i~~~~t~IaGif--GMN~~~~pe 339 (376)
..++|. ++|++.+..+..|-+-|.= ||=+.+.+.
T Consensus 263 ~m~~Lt---ilt~IflPlT~IaGiyGMNf~~mPel~~~~ 298 (324)
T PRK09546 263 RTYTMS---LMAMVFLPTTFLTGLFGVNLGGIPGGGWPF 298 (324)
T ss_pred HHHHHH---HHHHHHHHHHHHHhhhccccCCCCCcCCcc
Confidence 444444 3555555555554444432 344444333
No 22
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=31.27 E-value=1e+02 Score=29.47 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=39.4
Q ss_pred hhhhhhhhhhhccccccccccchHHHhh---hhc--c-cchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcch
Q 045110 139 TEAICSFLDARTRELETDAYPALDELTS---KIS--S-RNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDM 207 (376)
Q Consensus 139 Leav~~~l~~~~~~Le~~~~~~ld~L~~---~~~--~-~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm 207 (376)
||+-...++.+.++++.....+--++.. +.. . ..-..+-.|.+.+.+.+..-..+++-+.+|-...+|+
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 5555555555555555543332111111 111 0 1123455778888888888888888888887666665
No 23
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=31.26 E-value=64 Score=21.80 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.4
Q ss_pred HHHHHh
Q 045110 363 IIIFYA 368 (376)
Q Consensus 363 ~~~~~f 368 (376)
+.++|+
T Consensus 29 ~~~l~~ 34 (40)
T PF08693_consen 29 GAFLFF 34 (40)
T ss_pred HHHhhe
Confidence 334443
No 24
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=30.96 E-value=28 Score=26.26 Aligned_cols=54 Identities=13% Similarity=-0.031 Sum_probs=26.0
Q ss_pred eccceehhHHHHHHHHhccCcceeeecCCceEEEEeeeehhHHHHHHHHHHHHHhhhcc
Q 045110 314 CSGTVCLSVYSLVAAIFGMNIPYTWKTGHGYVFKWVVVITGIVCALLFSIIIFYARHKG 372 (376)
Q Consensus 314 ti~t~i~~~~t~IaGifGMN~~~~pe~~~~~gf~~v~~~~~~~~~~i~~~~~~~fkrk~ 372 (376)
|-+|-..+.+++..++++.==...|+ .|++..++++. +..++....=+|||+|+
T Consensus 6 tg~aYgtSag~~~~wl~~lld~~sp~---qW~aIGvi~gi--~~~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 6 TGAAYGTSAGSAGYWLLQLLDQFSPS---QWAAIGVIGGI--FFGLLTYLTNLYFKIKE 59 (68)
T ss_pred hhhccccchhhHHHHHHHHHhccCcc---cchhHHHHHHH--HHHHHHHHhHhhhhhhH
Confidence 33444444555555555542122333 34554444322 22344456668888764
No 25
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.52 E-value=13 Score=30.32 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=22.7
Q ss_pred EeeccceehhHHHHHHHHhccCcceeee
Q 045110 312 FLCSGTVCLSVYSLVAAIFGMNIPYTWK 339 (376)
Q Consensus 312 ~Lti~t~i~~~~t~IaGifGMN~~~~pe 339 (376)
.++++...++.+++++.+.|.=++.-..
T Consensus 44 ~~g~IG~~~v~pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3788888999999999999997765433
No 26
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=30.20 E-value=40 Score=30.29 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=30.5
Q ss_pred hhhhhhhhccccccccccchHHHhhhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhc
Q 045110 142 ICSFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLL 201 (376)
Q Consensus 142 v~~~l~~~~~~Le~~~~~~ld~L~~~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL 201 (376)
.+-.++..++.||....+.-|.+. ..++.-..+|++++.++.++..+-+-+.++|
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777666544333332 3344445566666666666666555555554
No 27
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=30.20 E-value=54 Score=28.94 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=31.8
Q ss_pred chhHHHhhHHHHHHHHHHHHH---HHHHHHhhcCCCcchhh
Q 045110 172 NLDRVRKLKSAMTRLTNRVQK---VRDELEQLLDDDDDMAD 209 (376)
Q Consensus 172 ~L~~l~~lK~~L~~l~~~v~~---vre~l~~lL~dd~dm~~ 209 (376)
.|.+|..+|++|..|++.+.. +|+.|++++.+.+.+..
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~ 150 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEK 150 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHH
Confidence 577888999999999988754 89999999998887654
No 28
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=29.80 E-value=67 Score=29.30 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=42.0
Q ss_pred cchhhhcccccceeEEEeccCCcccccchhhHHhhhhhcccccccccccCCCCCcccccccceEEeecchhhhhhccc
Q 045110 13 QSSLKKKTAVSSSWILLDREAQSTTLDVDKHVIMRRVQIHARDLRILDPMLNYPSTILGREKVIVLNLEHIKAIITAD 90 (376)
Q Consensus 13 ~~~~~~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilvnle~i~~II~~d 90 (376)
.++.....-+++.|..||..|+.----. +.++.. |....- | .|.|++.+=+.+||||-+.| +++.+
T Consensus 4 ~~~~~~~~~~~r~W~VIDA~~~iLGRLA--S~IAk~--L~GKhK----P--~ytP~~D~GD~VVVINAekI--~lTG~ 69 (191)
T PLN00205 4 LAGLRRINLEGLRWRVFDAKGQVLGRLA--SQISTV--LQGKDK----P--TYAPNRDDGDICIVLNAKDI--SVTGR 69 (191)
T ss_pred cccccccccCCCcEEEEeCCCCchHHHH--HHHHHH--HhccCC----C--CcCCCcCCCCEEEEEeccEE--EEeCC
Confidence 3566677889999999999988653100 112221 111111 2 47788888899999999965 45544
No 29
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.94 E-value=78 Score=28.44 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=35.1
Q ss_pred hhhccccccccccchHHHhhhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 045110 147 DARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQL 200 (376)
Q Consensus 147 ~~~~~~Le~~~~~~ld~L~~~~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~l 200 (376)
+...+.++..+..+.+.+..+-+...--+|.+.++++-++.++++.+-..+.++
T Consensus 91 e~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 91 EAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334333444455689999999999999999999988874
No 30
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=26.86 E-value=23 Score=26.52 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhccC
Q 045110 357 CALLFSIIIFYARHKGL 373 (376)
Q Consensus 357 ~~~i~~~~~~~fkrk~w 373 (376)
.++++.+.+.|++++||
T Consensus 57 ~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 57 LLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34555677888999998
No 31
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.69 E-value=1.1e+02 Score=23.98 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=35.7
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhh
Q 045110 171 RNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRK 215 (376)
Q Consensus 171 ~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~ 215 (376)
.-+.++..|+..|..|..+|..+++.-++|- .+..+...|+..-
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~-~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLE-SENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3456788899999999999999999999885 5556667787765
No 32
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=26.01 E-value=1.5e+02 Score=22.83 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHh
Q 045110 177 RKLKSAMTRLTNRVQKVRDELEQ 199 (376)
Q Consensus 177 ~~lK~~L~~l~~~v~~vre~l~~ 199 (376)
-.|+..|..+..+|+.+-..|++
T Consensus 14 kWL~~~l~dmd~kvk~mlkliee 36 (74)
T PF07765_consen 14 KWLQENLSDMDEKVKAMLKLIEE 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35778888889888877665554
No 33
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=24.51 E-value=62 Score=28.67 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=31.5
Q ss_pred chhHHHhhHHHHHHHHHHHH---HHHHHHHhhcCCCcchhh
Q 045110 172 NLDRVRKLKSAMTRLTNRVQ---KVRDELEQLLDDDDDMAD 209 (376)
Q Consensus 172 ~L~~l~~lK~~L~~l~~~v~---~vre~l~~lL~dd~dm~~ 209 (376)
.|.+|..+|+.|..|++.+. .+|+.|+++|.|++.+..
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~ 151 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEK 151 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHH
Confidence 57788899999999998875 489999999988776654
No 34
>PRK13682 hypothetical protein; Provisional
Probab=23.39 E-value=39 Score=24.08 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.9
Q ss_pred cceehhHHHHHHHHhcc
Q 045110 316 GTVCLSVYSLVAAIFGM 332 (376)
Q Consensus 316 ~t~i~~~~t~IaGifGM 332 (376)
++.+|...+.|||+||.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57789999999999985
No 35
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=22.64 E-value=44 Score=36.77 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=16.8
Q ss_pred eeeehhHHHHHHHHHHHHHhhhccC
Q 045110 349 VVVITGIVCALLFSIIIFYARHKGL 373 (376)
Q Consensus 349 v~~~~~~~~~~i~~~~~~~fkrk~w 373 (376)
++++++++.+++..++++|||||.|
T Consensus 278 ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 278 ILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3444445555666678889999876
No 36
>PF15102 TMEM154: TMEM154 protein family
Probab=22.13 E-value=84 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=13.1
Q ss_pred CceEEEEeeeeh-hHHHHHHHHHHHHHhhhccC
Q 045110 342 HGYVFKWVVVIT-GIVCALLFSIIIFYARHKGL 373 (376)
Q Consensus 342 ~~~gf~~v~~~~-~~~~~~i~~~~~~~fkrk~w 373 (376)
+.-.|..++++- +++.+++.++++++++.|||
T Consensus 53 ~q~efiLmIlIP~VLLvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 53 SQLEFILMILIPLVLLVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred CCcceEEEEeHHHHHHHHHHHHHHHheeEEeec
Confidence 445665544433 22333333333344444444
No 37
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.08 E-value=99 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhc
Q 045110 176 VRKLKSAMTRLTNRVQKVRDELEQLL 201 (376)
Q Consensus 176 l~~lK~~L~~l~~~v~~vre~l~~lL 201 (376)
+-.+|++...++..+..+.+-+.+++
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554443
No 38
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.42 E-value=1.2e+02 Score=21.71 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=22.0
Q ss_pred hhhhhhccccccccccchHHHhhhhcccchhHHHhhHHHHHHHHHHHHHHH
Q 045110 144 SFLDARTRELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTNRVQKVR 194 (376)
Q Consensus 144 ~~l~~~~~~Le~~~~~~ld~L~~~~~~~~L~~l~~lK~~L~~l~~~v~~vr 194 (376)
..|+..-..||.++..+ ...++.+. ..|+.|||+=..|+..+.+++
T Consensus 8 ~eL~kkHg~le~ei~ea----~n~Ps~dd-~~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 8 AELEKKHGNLEREIQEA----MNSPSSDD-LAIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHhhchHHHHHHHH----hcCCCcch-HHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555543321 22333333 246677776666655555444
No 39
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=21.31 E-value=31 Score=22.53 Aligned_cols=11 Identities=0% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHhhhc
Q 045110 361 FSIIIFYARHK 371 (376)
Q Consensus 361 ~~~~~~~fkrk 371 (376)
.++.++++|||
T Consensus 29 ~~~~~~~~krr 39 (39)
T PF00746_consen 29 LGGGLLLVKRR 39 (39)
T ss_dssp -----------
T ss_pred HHHHHHheecC
Confidence 34455666654
No 40
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=20.75 E-value=76 Score=19.80 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=4.2
Q ss_pred HHHHHhhhc
Q 045110 363 IIIFYARHK 371 (376)
Q Consensus 363 ~~~~~fkrk 371 (376)
+.+++.|||
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 444444544
No 41
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=20.36 E-value=1.8e+02 Score=30.09 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=57.8
Q ss_pred hcccchhHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHhhhhccccCCCCCCCCCcccccCCCcccccccccc
Q 045110 168 ISSRNLDRVRKLKSAMTRLTNRVQKVRDELEQLLDDDDDMADLYLSRKLAVASSPVSGSGAPHWFLNSPTIGSKISRTIS 247 (376)
Q Consensus 168 ~~~~~L~~l~~lK~~L~~l~~~v~~vre~l~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (376)
+++.+-.++|.+.|++..--...+++|-...++.|+..++-+|-=+....+. ..++
T Consensus 383 ~~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd------------------~~~~------ 438 (489)
T KOG3684|consen 383 VSKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYD------------------LLQE------ 438 (489)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH------------------HHHH------
Confidence 3556667888888876666666777777777777776655433111100000 0000
Q ss_pred cccceeecCcCCHHHHHHHHHHHHhhhcccchhhhhhhhhhcCcccceeeecccccc
Q 045110 248 RGSMETTQEENDVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRN 304 (376)
Q Consensus 248 ~~~~~~~~~~~~~eelE~LLE~y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N 304 (376)
-...++++|.-++.....++++.+.++++-..+....-.-+-.+.+.+|
T Consensus 439 --------l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~ 487 (489)
T KOG3684|consen 439 --------LHSRQEELEKQIDTLESKLEALTASLSSLPGLLAQPLRSQQDQLLSARI 487 (489)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhcCccccchhhhhhccc
Confidence 1224577777666666666666666666666665554333333333443
No 42
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=20.18 E-value=70 Score=21.50 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.7
Q ss_pred ehhHHHHHHHHhcc
Q 045110 319 CLSVYSLVAAIFGM 332 (376)
Q Consensus 319 i~~~~t~IaGifGM 332 (376)
+|...+.|||++|.
T Consensus 2 iFliiAliAg~lGF 15 (39)
T PF07043_consen 2 IFLIIALIAGVLGF 15 (39)
T ss_pred chHHHHHHHHHcCc
Confidence 67788899999885
Done!