BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045112
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 GSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHA----SVSGFLAAVNVI 193
G S ++P+ + F ++ D F++ YGS A + S A +
Sbjct: 50 GFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKV 109
Query: 194 LFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPH 250
L+ V + + GYP ++ QG WRND A G PN ++ F+ D N+ H
Sbjct: 110 LYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLNTGH 167
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 GSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHA----SVSGFLAAVNVI 193
G S ++P+ + F ++ D F++ YGS A + S A +
Sbjct: 50 GFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKV 109
Query: 194 LFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPH 250
L+ V + + GYP ++ QG WRND A G PN ++ F+ D N+ H
Sbjct: 110 LYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLNTGH 167
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 GSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHA----SVSGFLAAVNVI 193
G S ++P+ + F ++ D F++ YGS A + S A +
Sbjct: 50 GFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKV 109
Query: 194 LFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPH 250
L+ V + + GYP ++ QG WRND A G PN ++ F+ D N+ H
Sbjct: 110 LYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLNTGH 167
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 GSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHA----SVSGFLAAVNVI 193
G S ++P+ + F ++ D F++ YGS A + S A +
Sbjct: 50 GFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKV 109
Query: 194 LFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPH 250
L+ V + + GYP ++ QG WRND A G PN ++ F+ D N+ H
Sbjct: 110 LYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLNTGH 167
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 GSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHA----SVSGFLAAVNVI 193
G S ++P+ + F ++ D F++ YGS A + S A +
Sbjct: 50 GFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKV 109
Query: 194 LFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPH 250
L+ V + + GYP ++ QG WRND A G PN ++ F+ D N+ H
Sbjct: 110 LYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLNTGH 167
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 GSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHA----SVSGFLAAVNVI 193
G S ++P+ + F ++ D F++ YGS A + S A +
Sbjct: 50 GFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKV 109
Query: 194 LFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPH 250
L+ V + + GYP ++ QG WRND A G PN ++ F+ D N+ H
Sbjct: 110 LYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLNTGH 167
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 151 GSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHA----SVSGFLAAVNVI 193
G S ++P+ + F ++ D F++ YGS A + S A +
Sbjct: 50 GFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKV 109
Query: 194 LFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPH 250
L+ V + + GYP ++ QG WRND A G PN ++ F+ D N+ H
Sbjct: 110 LYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLNTGH 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,512,917
Number of Sequences: 62578
Number of extensions: 256146
Number of successful extensions: 551
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 7
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)