BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045112
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1A PE=1 SV=1
Length = 324
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 37/206 (17%)
Query: 76 EALYRQARDAYYSGKPLIVDDMFDRVELKLRWYGSKSVIKYPRCSIRRQSTYADAEEDLS 135
E + +A AY SG P++ D+ +D+++LKL+ GS V + PRCS+R + Y+D D
Sbjct: 140 EQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYF 199
Query: 136 QVLALG----IIWILILAFGSSICFVPIIYTVFLAYQDAFSRGISYGSHASVSGFLAAVN 191
++L L ++ + + F I I Y + L +F + + AAV
Sbjct: 200 KMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSF-----------IFTWFAAVP 248
Query: 192 VILFMAVGSLIGYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPHR 251
VI+++A+ + L D + L+G CPNCG E +F + + +S +
Sbjct: 249 VIVYLALS--------------ITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGK 294
Query: 252 SD---CHVCGSLLEFRTKVEQSSSRL 274
++ C CG+ + V S SRL
Sbjct: 295 TNTVKCTNCGTAM-----VYDSGSRL 315
>sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1B PE=1 SV=1
Length = 313
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 47/211 (22%)
Query: 76 EALYRQARDAYYSGKPLIVDDMFDRVELKLRWYGSKSVIKYPRCSIRRQSTYADAEEDL- 134
E + +A AY SG P++ D+ +D++++KL+ GS+ V + PRCS+R + Y+D D
Sbjct: 129 EQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYF 188
Query: 135 --------SQVLALGIIWILILAFGSSICFVPIIYTVFLAYQDAFSRGISYGSHASVSGF 186
+ V+ALG+ + L G I T L + FS ++
Sbjct: 189 KMFLLNVPATVVALGLFFFLDDITGFEI-------TYLLELPEPFSFIFTW--------- 232
Query: 187 LAAVNVILFMAVGSLIGYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAF---VNSD 243
AAV I+++A+ L L D + L+G CPNCG E +F + S
Sbjct: 233 FAAVPAIVYLALS--------------LTKLILKDFLILKGPCPNCGTENVSFFGTILSI 278
Query: 244 QTKNSPHRSDCHVCGSLLEFRTKVEQSSSRL 274
++ + C CG+ + V S SRL
Sbjct: 279 PNDSNTNNVKCSGCGTEM-----VYDSGSRL 304
>sp|P13507|AMT4_PSEST Glucan 1,4-alpha-maltotetraohydrolase OS=Pseudomonas stutzeri
GN=amyP PE=1 SV=2
Length = 548
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 147 ILAFGSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHASVSGFLAAVN-- 191
I A G S ++P+ + F ++ D F++ YGS A + +A+
Sbjct: 67 IAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGA 126
Query: 192 --VILFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKN 247
+L+ V + + GYP ++ QG WRND A G PN ++ F+ D N
Sbjct: 127 GVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGDADLN 185
Query: 248 SPH 250
+ H
Sbjct: 186 TGH 188
>sp|Q0IAP2|HSLO_SYNS3 33 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=hslO PE=3
SV=1
Length = 301
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 14 GSTFVELSRSGRTGAPFSVRISTKSHGNGGGGFAAAATMCKNEEGPSCIFVGPLETASKE 73
G+ ++ + R G PFS ST GG G A+ + +E+ PS +FVG ET S+E
Sbjct: 117 GTGYLHVVRDEGKGEPFS---STVELVRGGIGEDVASYLLHSEQTPSAVFVG--ETISQE 171
Query: 74 TLE 76
LE
Sbjct: 172 GLE 174
>sp|C6DJC3|LIGB_PECCP DNA ligase B OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=ligB PE=3 SV=1
Length = 562
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 15/73 (20%)
Query: 42 GGGGFAAAATMCKNEEGPSCIFVGPLETASKETLEALYRQAR---DAYYS-GKPLIVDDM 97
G GF+A A +C + + T SK+ ++AL +Q D YY+ GK + DD+
Sbjct: 15 GISGFSAVAGVCPDWDN----------TRSKKEIDALRQQLEQWDDVYYTEGKSPVADDV 64
Query: 98 FDRVELKL-RWYG 109
+D++ +L +W G
Sbjct: 65 YDQLREQLNQWLG 77
>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=Dictyostelium discoideum
GN=rfc1 PE=3 SV=1
Length = 1401
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 87 YSGKPLIVDDMFDRVELKLRWYGSKSVIKYPRCSIRRQSTYADAEEDLSQV-LALG--II 143
+S PLI+ + + LK R YG S KY C + S ADA D Q A+G +
Sbjct: 1126 FSLVPLIIQENY----LKTRPYGGGSQSKYNDCEL--ISMAADALSDSDQFGRAIGKEMA 1179
Query: 144 WILILAFGSSICFVPIIY 161
W L+ +G + C +P Y
Sbjct: 1180 WNLLPTYGVTSCIIPSGY 1197
>sp|Q54337|AGRB_STALU Accessory gene regulator protein B OS=Staphylococcus lugdunensis
GN=agrB PE=3 SV=1
Length = 188
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 120 SIRRQSTYADAEEDLSQV----------LALGIIWILILAFGSSICFVPIIYTVFLAYQD 169
I R + Y + +L + +ALG + I+ +G ++ F +YT+
Sbjct: 7 KIERFARYLQRQNNLDHIQFLKIRLGLQVALGNFFKTIVTYGVALLFHTFLYTLITHLTY 66
Query: 170 AFSRGISYGSHASVSGFLAAVNVILFMAV 198
F R ++G+HA S N++LF+A+
Sbjct: 67 FFVRRFAHGAHARSSLLCHIQNLVLFVAL 95
>sp|P22963|AMT4_PSESA Glucan 1,4-alpha-maltotetraohydrolase OS=Pseudomonas saccharophila
GN=mta PE=3 SV=1
Length = 551
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 147 ILAFGSSICFVPIIYTVFLAYQDA-------------FSRGISYGSHASVSGFLAAVNV- 192
I A G S ++P+ + F ++ D F++ YGS A + A+
Sbjct: 67 IAADGFSAIWMPVPWRDFSSWTDGGKSGGGEGYFWHDFNKNGRYGSDAQLRQAAGALGGA 126
Query: 193 ---ILFMAVGSLI--GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKN 247
+L+ V + + GYP ++ QG WRND A G PN ++ F+ + N
Sbjct: 127 GVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRND-CADPGNYPNDCDDGDRFIGGESDLN 185
Query: 248 SPH 250
+ H
Sbjct: 186 TGH 188
>sp|P77871|COPA1_HELPX Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=2
Length = 745
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 147 ILAFGSSICFVPIIYTVFLAYQDAFSRGISYGSHASVSGFLAAVNVILFMAVGSLIGYPI 206
++A G+S + ++ ++L Y D ++ SYG + F + +++F+ VG I
Sbjct: 159 LIAIGTSAALISSLWQLYLVYTDHYTDQWSYGHYY----FESVCVILMFVMVGKRIENVS 214
Query: 207 ASASVRVLQGLWRN 220
++ +Q L +N
Sbjct: 215 KDKALDAMQALMKN 228
>sp|B1VDV2|ARC_CORU7 AAA ATPase forming ring-shaped complexes OS=Corynebacterium
urealyticum (strain ATCC 43042 / DSM 7109) GN=arc PE=3
SV=1
Length = 538
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 36 TKSHGNGGGGFAAAATMCKNEEGPSCI--FVGPLETASKETLEALYRQARDAYYSGKPLI 93
+KS G+ A + N +GP + FVG E ++ ++ +AR ++GKP+I
Sbjct: 255 SKSMGSSDKASRFADSYFLNVKGPELLNKFVGETERQIRQ----IFERARKIAHAGKPVI 310
Query: 94 VDDMFDRVELKLRWYGSKSVIKYPRCSIRRQSTYADAEEDLSQVLALG 141
V FD +E R G+ + + + D E L V+ +G
Sbjct: 311 V--FFDEMEAIFRTRGTGVSSDMESTVVPQLLSELDGVEGLDNVIVIG 356
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,265,403
Number of Sequences: 539616
Number of extensions: 4168629
Number of successful extensions: 11418
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 11409
Number of HSP's gapped (non-prelim): 17
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)