Query 045112
Match_columns 296
No_of_seqs 70 out of 72
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4glw_A DNA ligase; inhibitor, 96.2 0.00073 2.5E-08 62.8 -0.3 37 71-107 4-41 (305)
2 3jsl_A DNA ligase; NAD+-depend 96.1 0.0051 1.7E-07 57.9 4.8 38 70-107 6-44 (318)
3 3uq8_A DNA ligase; adenylated 96.0 0.0053 1.8E-07 57.8 4.7 37 71-107 5-42 (322)
4 1zau_A DNA ligase; AMP; HET: D 95.9 0.007 2.4E-07 57.1 4.9 38 70-107 15-53 (328)
5 1ta8_A DNA ligase, NAD-depende 95.9 0.0069 2.4E-07 57.3 4.7 37 71-107 14-51 (332)
6 1b04_A Protein (DNA ligase); D 95.8 0.0066 2.3E-07 57.1 4.5 37 71-107 9-46 (318)
7 4glx_A DNA ligase; inhibitor, 95.5 0.0083 2.8E-07 60.4 4.1 37 71-107 7-44 (586)
8 2owo_A DNA ligase; protein-DNA 94.4 0.03 1E-06 57.3 4.4 37 71-107 7-44 (671)
9 1dgs_A DNA ligase; AMP complex 94.2 0.032 1.1E-06 57.0 4.1 37 71-107 9-46 (667)
10 4esj_A Type-2 restriction enzy 93.7 0.035 1.2E-06 51.3 3.2 58 203-267 15-72 (257)
11 3sgi_A DNA ligase; HET: DNA AM 93.0 0.017 5.8E-07 58.6 -0.2 37 71-107 16-53 (615)
12 1nui_A DNA primase/helicase; z 92.8 0.046 1.6E-06 47.8 2.3 34 223-263 11-45 (255)
13 3j20_W 30S ribosomal protein S 89.7 0.2 6.8E-06 37.7 2.7 37 223-265 12-48 (63)
14 1qxf_A GR2, 30S ribosomal prot 89.3 0.22 7.6E-06 37.8 2.7 34 225-264 6-39 (66)
15 1pft_A TFIIB, PFTFIIBN; N-term 87.9 0.24 8E-06 34.0 1.9 29 228-262 7-35 (50)
16 1qyp_A RNA polymerase II; tran 87.2 0.26 8.8E-06 34.8 1.8 35 226-260 15-52 (57)
17 3u5c_b RP61, YS20, 40S ribosom 85.1 0.48 1.6E-05 37.3 2.5 39 221-265 29-67 (82)
18 3j20_Y 30S ribosomal protein S 83.9 0.44 1.5E-05 33.7 1.7 32 222-260 15-46 (50)
19 2xzm_6 RPS27E; ribosome, trans 83.7 0.66 2.3E-05 36.4 2.8 37 223-265 29-65 (81)
20 1dl6_A Transcription factor II 83.6 0.55 1.9E-05 33.8 2.2 29 228-262 13-41 (58)
21 3flo_B DNA polymerase alpha ca 83.3 0.54 1.9E-05 41.7 2.4 45 215-261 11-59 (206)
22 3iz6_X 40S ribosomal protein S 83.3 0.68 2.3E-05 36.7 2.7 37 221-263 31-67 (86)
23 1lko_A Rubrerythrin all-iron(I 79.5 0.65 2.2E-05 39.9 1.5 27 226-261 155-181 (191)
24 1twf_L ABC10-alpha, DNA-direct 79.1 0.75 2.6E-05 34.7 1.6 33 224-264 26-58 (70)
25 3h0g_L DNA-directed RNA polyme 78.6 0.98 3.4E-05 33.7 2.1 32 225-264 20-51 (63)
26 1wii_A Hypothetical UPF0222 pr 77.4 1.2 4.2E-05 34.8 2.4 39 227-268 24-62 (85)
27 3cng_A Nudix hydrolase; struct 75.0 1.6 5.3E-05 35.8 2.5 29 228-259 5-33 (189)
28 1x3z_A Peptide: N-glycanase; h 74.0 1.5 5.1E-05 41.8 2.4 50 214-263 105-167 (335)
29 3ir9_A Peptide chain release f 73.4 2 6.9E-05 36.4 2.9 39 226-264 78-116 (166)
30 1tfi_A Transcriptional elongat 73.2 2.1 7.1E-05 30.1 2.4 36 226-261 9-47 (50)
31 2k4x_A 30S ribosomal protein S 72.1 1.9 6.5E-05 31.0 2.1 30 225-261 17-46 (55)
32 1pft_A TFIIB, PFTFIIBN; N-term 70.2 2.4 8.1E-05 28.9 2.1 18 249-266 3-21 (50)
33 3p2a_A Thioredoxin 2, putative 69.4 2.1 7.3E-05 32.8 2.0 32 226-262 5-36 (148)
34 2kdx_A HYPA, hydrogenase/ureas 67.0 2.3 7.9E-05 33.7 1.8 31 222-261 69-100 (119)
35 1yuz_A Nigerythrin; rubrythrin 66.6 2.9 9.8E-05 36.4 2.4 27 225-261 170-196 (202)
36 1vq8_Z 50S ribosomal protein L 65.9 2.5 8.4E-05 32.8 1.7 29 226-261 27-55 (83)
37 3v2d_5 50S ribosomal protein L 65.8 2.2 7.6E-05 31.3 1.3 20 227-258 31-50 (60)
38 2lcq_A Putative toxin VAPC6; P 65.7 2.3 7.9E-05 35.0 1.6 33 220-261 126-158 (165)
39 2fiy_A Protein FDHE homolog; F 65.4 3.1 0.00011 38.8 2.5 37 224-260 180-231 (309)
40 3pwf_A Rubrerythrin; non heme 63.3 3.4 0.00011 35.2 2.2 26 227-262 139-164 (170)
41 1d0q_A DNA primase; zinc-bindi 62.6 4 0.00014 31.6 2.3 31 225-259 36-66 (103)
42 2xzf_A Formamidopyrimidine-DNA 58.5 3.9 0.00013 36.9 1.8 28 227-259 243-270 (271)
43 3h0g_I DNA-directed RNA polyme 57.6 6.9 0.00024 31.1 2.9 35 226-260 72-109 (113)
44 3po3_S Transcription elongatio 56.7 5.9 0.0002 34.1 2.6 36 228-263 139-177 (178)
45 3k7a_M Transcription initiatio 56.4 4.6 0.00016 37.2 2.0 33 226-262 21-53 (345)
46 3u5c_f 40S ribosomal protein S 56.0 6.2 0.00021 32.9 2.5 36 222-265 114-152 (152)
47 1ee8_A MUTM (FPG) protein; bet 54.7 5.6 0.00019 35.9 2.2 28 227-259 236-263 (266)
48 3u6p_A Formamidopyrimidine-DNA 54.4 4.9 0.00017 36.4 1.7 26 228-258 247-272 (273)
49 3o9x_A Uncharacterized HTH-typ 54.1 2 6.7E-05 33.4 -0.8 34 228-261 4-46 (133)
50 1k82_A Formamidopyrimidine-DNA 53.8 5 0.00017 36.2 1.7 28 227-259 241-268 (268)
51 1k3x_A Endonuclease VIII; hydr 53.8 5 0.00017 36.0 1.7 27 228-259 236-262 (262)
52 3j21_g 50S ribosomal protein L 53.6 4.9 0.00017 28.8 1.3 29 226-266 14-42 (51)
53 2au3_A DNA primase; zinc ribbo 52.9 6.3 0.00022 37.0 2.3 31 225-259 33-63 (407)
54 2apo_B Ribosome biogenesis pro 52.8 3.9 0.00013 30.3 0.7 12 226-237 18-29 (60)
55 2k1p_A Zinc finger RAN-binding 52.3 5.8 0.0002 25.6 1.4 22 228-260 8-29 (33)
56 1gh9_A 8.3 kDa protein (gene M 51.7 4.2 0.00014 30.7 0.8 29 228-265 6-34 (71)
57 1twf_I B12.6, DNA-directed RNA 51.7 8.2 0.00028 31.1 2.5 35 226-260 72-109 (122)
58 1vq8_Z 50S ribosomal protein L 50.1 6.6 0.00023 30.4 1.6 20 249-268 25-44 (83)
59 2f4m_A Peptide N-glycanase; gl 49.2 6.7 0.00023 36.6 1.8 48 215-263 68-126 (295)
60 1l8d_A DNA double-strand break 49.2 4.2 0.00014 31.4 0.4 12 226-237 47-58 (112)
61 1k81_A EIF-2-beta, probable tr 49.2 4.5 0.00015 26.7 0.5 30 228-261 2-31 (36)
62 1dx8_A Rubredoxin; electron tr 49.1 7.1 0.00024 29.3 1.6 53 226-281 7-70 (70)
63 2lk0_A RNA-binding protein 5; 48.8 7.6 0.00026 24.9 1.5 22 228-260 7-28 (32)
64 1ltl_A DNA replication initiat 48.6 8.6 0.0003 34.4 2.4 43 223-269 131-173 (279)
65 3m7n_A Putative uncharacterize 48.1 12 0.00042 31.5 3.2 32 220-260 134-165 (179)
66 3a43_A HYPD, hydrogenase nicke 47.6 7.6 0.00026 31.9 1.8 41 222-262 66-118 (139)
67 2aus_D NOP10, ribosome biogene 47.5 5.5 0.00019 29.5 0.8 14 225-238 16-29 (60)
68 3bvo_A CO-chaperone protein HS 46.8 9.5 0.00033 33.3 2.3 31 226-264 10-40 (207)
69 1vk6_A NADH pyrophosphatase; 1 46.0 9.3 0.00032 34.2 2.2 27 227-260 108-134 (269)
70 1vd4_A Transcription initiatio 45.6 4.4 0.00015 27.3 -0.0 42 228-271 16-59 (62)
71 3f2b_A DNA-directed DNA polyme 45.0 8.6 0.00029 41.4 2.1 34 227-262 503-538 (1041)
72 1pqv_S STP-alpha, transcriptio 44.9 11 0.00038 34.7 2.6 37 227-263 269-308 (309)
73 2pzi_A Probable serine/threoni 44.3 16 0.00055 35.5 3.7 60 226-288 34-101 (681)
74 2k5c_A Uncharacterized protein 43.3 3.4 0.00012 33.0 -0.9 23 249-271 6-28 (95)
75 2ct7_A Ring finger protein 31; 42.2 13 0.00044 27.9 2.2 32 229-267 28-59 (86)
76 3w0f_A Endonuclease 8-like 3; 41.8 14 0.00046 34.3 2.7 28 228-259 253-281 (287)
77 2kdx_A HYPA, hydrogenase/ureas 41.0 11 0.00036 29.8 1.6 15 228-242 92-106 (119)
78 2cw9_A Translocase of inner mi 40.4 16 0.00055 31.1 2.7 38 72-109 58-101 (194)
79 3ih6_A Putative zinc protease; 39.1 46 0.0016 26.3 5.1 49 57-107 82-130 (197)
80 3cw2_K Translation initiation 38.8 13 0.00044 31.2 1.8 31 226-260 103-133 (139)
81 2d74_B Translation initiation 38.8 15 0.00051 31.2 2.2 31 227-261 105-135 (148)
82 2xzm_9 RPS31E; ribosome, trans 38.1 11 0.00037 33.0 1.3 37 222-265 109-145 (189)
83 2k0m_A Uncharacterized protein 37.7 39 0.0013 27.0 4.4 43 64-107 9-51 (104)
84 2vl6_A SSO MCM N-TER, minichro 37.5 17 0.0006 32.0 2.6 39 228-266 143-183 (268)
85 3h99_A Methionyl-tRNA syntheta 36.8 16 0.00053 35.5 2.3 10 226-235 155-164 (560)
86 2fiy_A Protein FDHE homolog; F 34.7 23 0.0008 32.9 3.0 16 249-264 180-195 (309)
87 2l6l_A DNAJ homolog subfamily 34.6 10 0.00035 30.8 0.6 37 221-261 107-143 (155)
88 3ga8_A HTH-type transcriptiona 34.5 8.7 0.0003 28.2 0.1 11 228-238 38-48 (78)
89 1x4l_A Skeletal muscle LIM-pro 34.5 18 0.00062 25.1 1.8 36 227-262 6-46 (72)
90 4bbr_M Transcription initiatio 34.4 18 0.00062 33.5 2.3 32 225-262 20-53 (345)
91 3na7_A HP0958; flagellar bioge 34.3 7.6 0.00026 34.3 -0.3 43 225-269 197-240 (256)
92 3mhs_C SAGA-associated factor 34.1 18 0.00062 29.2 1.9 39 224-262 37-81 (99)
93 1dxg_A Desulforedoxin; non-hem 33.9 22 0.00075 23.1 2.0 12 229-240 9-20 (36)
94 2co8_A NEDD9 interacting prote 33.4 22 0.00075 25.7 2.1 35 227-262 16-53 (82)
95 2avu_E Flagellar transcription 32.8 18 0.00063 31.9 1.9 30 224-258 132-161 (192)
96 1nee_A EIF-2-beta, probable tr 31.8 14 0.00049 30.9 1.0 29 228-260 104-132 (138)
97 1ryq_A DNA-directed RNA polyme 31.5 15 0.0005 27.9 0.9 13 225-237 22-34 (69)
98 3r8s_0 50S ribosomal protein L 31.3 13 0.00045 26.7 0.6 12 226-237 27-38 (56)
99 2cor_A Pinch protein; LIM doma 30.5 39 0.0013 24.2 3.0 35 226-262 15-52 (79)
100 2l3k_A Rhombotin-2, linker, LI 28.9 38 0.0013 26.2 2.9 34 228-261 10-46 (123)
101 3f9v_A Minichromosome maintena 28.1 24 0.00081 34.8 2.0 42 225-266 134-177 (595)
102 3p8b_A DNA-directed RNA polyme 28.0 18 0.00062 28.3 0.9 10 228-237 37-46 (81)
103 1x61_A Thyroid receptor intera 27.9 30 0.001 23.9 2.0 36 227-262 6-44 (72)
104 3qt1_I DNA-directed RNA polyme 27.7 13 0.00044 30.8 0.0 34 226-259 92-128 (133)
105 1wyh_A SLIM 2, skeletal muscle 27.6 32 0.0011 23.6 2.1 35 227-262 6-44 (72)
106 1wig_A KIAA1808 protein; LIM d 27.6 40 0.0014 23.8 2.7 34 228-262 7-42 (73)
107 2hzd_A Transcriptional enhance 27.4 35 0.0012 26.6 2.4 24 73-96 11-37 (82)
108 1wd2_A Ariadne-1 protein homol 27.1 30 0.001 24.8 1.9 31 227-264 7-39 (60)
109 3lpe_B DNA-directed RNA polyme 26.9 14 0.00049 27.0 0.2 10 228-237 15-24 (59)
110 3moe_A Phosphoenolpyruvate car 26.4 42 0.0014 34.6 3.4 45 77-121 30-79 (624)
111 1n0z_A ZNF265; zinc finger, RN 26.4 29 0.00099 23.8 1.6 22 228-260 16-39 (45)
112 2kv1_A Methionine-R-sulfoxide 26.2 28 0.00097 29.0 1.8 36 228-263 22-82 (124)
113 1x68_A FHL5 protein; four-and- 26.1 18 0.00063 25.5 0.6 34 227-262 6-46 (76)
114 2akl_A PHNA-like protein PA012 25.8 27 0.00091 29.8 1.6 27 227-261 28-54 (138)
115 2gmg_A Hypothetical protein PF 25.1 43 0.0015 27.2 2.7 32 221-260 62-93 (105)
116 1e8j_A Rubredoxin; iron-sulfur 24.9 48 0.0017 23.3 2.6 31 227-260 4-45 (52)
117 2b9d_A E7 protein; zinc finger 24.4 27 0.00092 24.9 1.2 25 208-235 26-50 (52)
118 3aia_A UPF0217 protein MJ1640; 24.4 63 0.0021 28.7 3.8 63 56-118 66-145 (211)
119 1xak_A SARS ORF7A accessory pr 24.3 22 0.00077 27.5 0.8 24 214-237 7-30 (83)
120 2e9h_A EIF-5, eukaryotic trans 24.1 32 0.0011 29.5 1.9 36 227-264 104-139 (157)
121 2do5_A Splicing factor 3B subu 23.7 79 0.0027 23.2 3.6 29 80-109 16-46 (58)
122 1h7b_A Anaerobic ribonucleotid 23.6 25 0.00085 35.6 1.2 27 227-260 541-567 (605)
123 2kn9_A Rubredoxin; metalloprot 23.4 39 0.0013 26.1 2.0 32 226-260 27-69 (81)
124 2egq_A FHL1 protein; LIM domai 23.3 25 0.00087 24.5 0.9 36 227-262 16-57 (77)
125 3irb_A Uncharacterized protein 23.1 97 0.0033 25.3 4.5 59 210-284 33-91 (145)
126 4ayb_P DNA-directed RNA polyme 22.9 56 0.0019 23.4 2.6 31 228-263 5-35 (48)
127 3a1g_A RNA-directed RNA polyme 22.7 1.1E+02 0.0036 24.0 4.3 46 60-107 25-72 (80)
128 3ghf_A Septum site-determining 22.5 53 0.0018 26.2 2.8 39 73-112 32-77 (120)
129 2zjr_Z 50S ribosomal protein L 22.3 24 0.00083 25.7 0.6 19 228-258 32-50 (60)
130 3nw0_A Non-structural maintena 21.9 17 0.00059 32.2 -0.3 39 220-264 187-230 (238)
131 1gdh_A D-glycerate dehydrogena 21.7 85 0.0029 28.3 4.2 44 51-95 271-317 (320)
132 2x5c_A Hypothetical protein OR 21.6 37 0.0013 27.9 1.6 30 204-237 34-63 (131)
133 1rqg_A Methionyl-tRNA syntheta 21.5 36 0.0012 34.5 1.9 39 226-266 140-185 (722)
134 1s24_A Rubredoxin 2; electron 21.1 38 0.0013 26.5 1.6 32 226-260 35-77 (87)
135 1x62_A C-terminal LIM domain p 20.7 40 0.0014 23.9 1.5 34 227-262 16-52 (79)
136 1wge_A Hypothetical protein 26 20.4 24 0.00081 27.4 0.2 36 223-261 27-62 (83)
137 3k1f_M Transcription initiatio 20.4 43 0.0015 30.0 1.9 37 222-262 17-53 (197)
138 1dt9_A ERF1, protein (eukaryot 20.2 30 0.001 32.9 0.9 45 217-262 320-367 (437)
139 2jvx_A NF-kappa-B essential mo 20.2 40 0.0014 21.4 1.2 12 250-261 2-13 (28)
No 1
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=96.18 E-value=0.00073 Score=62.78 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=6.3
Q ss_pred cHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
.++||.++-.++..+|| .|+|+|||+|||.|..+|+.
T Consensus 4 ri~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~~ 41 (305)
T 4glw_A 4 RMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVE 41 (305)
T ss_dssp HHHC-----------------------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 46778888888889987 59999999999999998874
No 2
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=96.06 E-value=0.0051 Score=57.94 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHHHhhc-CCCccchhhhHHHHHHHhH
Q 045112 70 ASKETLEALYRQARDAYYS-GKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 70 ~t~~elE~~flqA~~AY~~-GkPimsDeeFD~LK~kLk~ 107 (296)
...++|.++-.++..+||. |+|+|||+|||+|..+|+.
T Consensus 6 ~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 44 (318)
T 3jsl_A 6 SRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIK 44 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3567888888888888775 9999999999999999873
No 3
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=96.02 E-value=0.0053 Score=57.82 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHHhhc-CCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYYS-GKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~~-GkPimsDeeFD~LK~kLk~ 107 (296)
..++|.++-.++..+||. ++|+|||+|||+|..||+.
T Consensus 5 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 42 (322)
T 3uq8_A 5 QLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKA 42 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 467788888888899885 9999999999999999874
No 4
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=95.90 E-value=0.007 Score=57.12 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 70 ASKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 70 ~t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
+..++|.++-.++..+|| .|+|+|||+|||+|..+|+.
T Consensus 15 ~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 53 (328)
T 1zau_A 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEA 53 (328)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 357888888888888877 69999999999999999984
No 5
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=95.86 E-value=0.0069 Score=57.27 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
..++|.++--++..+|| .|+|+|||+|||+|..+|+.
T Consensus 14 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 51 (332)
T 1ta8_A 14 RAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVD 51 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 46778888888888877 79999999999999999884
No 6
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=95.85 E-value=0.0066 Score=57.06 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
..++|.++--++..+|| .|+|+|||+|||+|..+|+.
T Consensus 9 ~~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 46 (318)
T 1b04_A 9 RAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIA 46 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 46778888888888876 79999999999999999883
No 7
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=95.54 E-value=0.0083 Score=60.43 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
..++|.++-.++..+|| .|+|+|||+|||+|..||+.
T Consensus 7 ~i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~~ 44 (586)
T 4glx_A 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE 44 (586)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 46678888888888887 59999999999999999874
No 8
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=94.35 E-value=0.03 Score=57.26 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
..++|.++-.++..+|| .++|+|||+|||+|..+|+.
T Consensus 7 ~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~~ 44 (671)
T 2owo_A 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE 44 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 46788888888888876 69999999999999999884
No 9
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.16 E-value=0.032 Score=57.04 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
..++|.++-.++..+|| .++|+|||+|||+|..+|+.
T Consensus 9 ~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~~ 46 (667)
T 1dgs_A 9 RINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKE 46 (667)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 45677777778888877 69999999999999999985
No 10
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=93.73 E-value=0.035 Score=51.35 Aligned_cols=58 Identities=24% Similarity=0.555 Sum_probs=41.0
Q ss_pred hhhhhhhhHHHHhhhhccceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEecce
Q 045112 203 GYPIASASVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTKV 267 (296)
Q Consensus 203 gyplasa~v~~Lt~l~~~D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~v 267 (296)
+|-=.|-.+++||..|... .+.|||||.+..+=|+...+ ..+.-|++|....|.-|+=
T Consensus 15 ~YkS~SQ~aRVLTE~Wv~~----n~yCPnCG~~~l~~f~nN~P---VaDF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 15 TYKSNSQKARILTEDWVYR----QSYCPNCGNNPLNHFENNRP---VADFYCNHCSEEFELKSKK 72 (257)
T ss_dssp HTTTCTTHHHHHHHHHHHH----HCCCTTTCCSSCEEC----C---CCEEECTTTCCEEEEEEEE
T ss_pred hccChhheehhhhHHHHHH----CCcCCCCCChhhhhccCCCc---ccccccCCcchhheecccc
Confidence 4555566677788777654 57899999988777765444 5678999999988877653
No 11
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=92.97 E-value=0.017 Score=58.63 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHhh-cCCCccchhhhHHHHHHHhH
Q 045112 71 SKETLEALYRQARDAYY-SGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 71 t~~elE~~flqA~~AY~-~GkPimsDeeFD~LK~kLk~ 107 (296)
..++|.++-.++..+|| .++|+|||+|||+|..||+.
T Consensus 16 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~ 53 (615)
T 3sgi_A 16 QWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEA 53 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 46677777778888888 79999999999999988873
No 12
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=92.79 E-value=0.046 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=23.5
Q ss_pred eeeecCCCCCcc-ccceeeccCCCCCCCCccccCCCCcceEE
Q 045112 223 VALRGACPNCGE-EVFAFVNSDQTKNSPHRSDCHVCGSLLEF 263 (296)
Q Consensus 223 liLKGpCPNCGe-Ev~sFfgtv~s~~~~n~vkChvC~t~L~f 263 (296)
..-+++||+||- .-+.||. .+ ...||+||..-.+
T Consensus 11 ~~~~~~CP~Cg~~d~~~~~~--dg-----~~~C~~Cg~~~~~ 45 (255)
T 1nui_A 11 FLYHIPCDNCGSSDGNSLFS--DG-----HTFCYVCEKWTAG 45 (255)
T ss_dssp EEEEECCSSSCCSSCEEEET--TS-----CEEETTTCCEEC-
T ss_pred eecCCcCCCCCCCCCceEeC--CC-----CeecccCCCcCCC
Confidence 345999999998 4456562 22 3999999976443
No 13
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.68 E-value=0.2 Score=37.71 Aligned_cols=37 Identities=32% Similarity=0.671 Sum_probs=29.8
Q ss_pred eeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEec
Q 045112 223 VALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRT 265 (296)
Q Consensus 223 liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds 265 (296)
--++--||.|+++...| +.+...+.|.+|++.|.--|
T Consensus 12 ~Fm~VkCp~C~~~q~VF------Sha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 12 RFLRVKCIDCGNEQIVF------SHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp CEEEEECSSSCCEEEEE------SSCSSCEECSSSCCEEEECC
T ss_pred cEEEEECCCCCCeeEEE------ecCCeEEEccCcCCEEecCC
Confidence 45677799999999887 26677899999999986543
No 14
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=89.31 E-value=0.22 Score=37.81 Aligned_cols=34 Identities=24% Similarity=0.656 Sum_probs=28.4
Q ss_pred eecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEe
Q 045112 225 LRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFR 264 (296)
Q Consensus 225 LKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fd 264 (296)
|+--||.|+++...| +.+...+.|.+|++.|.--
T Consensus 6 m~VKCp~C~niq~VF------ShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIF------DHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEEECTTTCCEEEEE------SSCSSCEECSSSCCEEEEC
T ss_pred EEEECCCCCCceEEE------ecCceEEEcccCCCEEeec
Confidence 677799999999888 3677789999999998643
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=87.93 E-value=0.24 Score=34.01 Aligned_cols=29 Identities=24% Similarity=0.699 Sum_probs=20.9
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcceE
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
.||+||.+...| .....+..|..||..+.
T Consensus 7 ~CP~C~~~~l~~------d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCPACESAELIY------DPERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCTTTSCCCEEE------ETTTTEEEESSSCCBCC
T ss_pred eCcCCCCcceEE------cCCCCeEECcccCCccc
Confidence 599999865544 13456899999987543
No 16
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=87.21 E-value=0.26 Score=34.84 Aligned_cols=35 Identities=23% Similarity=0.554 Sum_probs=24.5
Q ss_pred ecCCCCCccccceeecc-CCCC--CCCCccccCCCCcc
Q 045112 226 RGACPNCGEEVFAFVNS-DQTK--NSPHRSDCHVCGSL 260 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgt-v~s~--~~~n~vkChvC~t~ 260 (296)
.-+||.||.+...|+-. ..+. ..+--.+|.+||..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 67899999977777642 2222 34566899999874
No 17
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=85.08 E-value=0.48 Score=37.31 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=31.0
Q ss_pred ceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEec
Q 045112 221 DLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRT 265 (296)
Q Consensus 221 D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds 265 (296)
+---++--||.|+++...| +.+...+.|.+|++.|.--|
T Consensus 29 nS~Fm~VkCp~C~~~q~VF------Sha~t~V~C~~Cg~~L~~PT 67 (82)
T 3u5c_b 29 RSYFLDVKCPGCLNITTVF------SHAQTAVTCESCSTILCTPT 67 (82)
T ss_dssp CCCEEEEECTTSCSCEEEE------SBCSSCCCCSSSCCCCEECC
T ss_pred CCcEEEEECCCCCCeeEEE------ecCCeEEEccccCCEEeccC
Confidence 3356777899999999888 25677899999999986543
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.86 E-value=0.44 Score=33.70 Aligned_cols=32 Identities=31% Similarity=0.690 Sum_probs=22.5
Q ss_pred eeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 222 LVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 222 ~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
..-+.--||+||.+++-. . ...+..|..||-.
T Consensus 15 v~~~~k~CP~CG~~~fm~--~-----~~~R~~C~kCG~t 46 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVFMA--D-----HGDRWACGKCGYT 46 (50)
T ss_dssp EECSSEECSSSCSSCEEE--E-----CSSEEECSSSCCE
T ss_pred EEEecccCCCCCCceEEe--c-----CCCeEECCCCCCE
Confidence 344677899999987533 1 1367899999853
No 19
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=83.67 E-value=0.66 Score=36.41 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=30.1
Q ss_pred eeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEec
Q 045112 223 VALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRT 265 (296)
Q Consensus 223 liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds 265 (296)
--|+--||.|+++...| +.+...|.|.+|++.|.--|
T Consensus 29 ~Fm~VkCp~C~n~q~VF------ShA~t~V~C~~Cg~~L~~PT 65 (81)
T 2xzm_6 29 YFMDVKCAQCQNIQMIF------SNAQSTIICEKCSAILCKPT 65 (81)
T ss_dssp CEEEEECSSSCCEEEEE------TTCSSCEECSSSCCEEEEEC
T ss_pred cEEEeECCCCCCeeEEE------ecCccEEEccCCCCEEeecC
Confidence 44778899999998887 26777899999999987544
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=83.64 E-value=0.55 Score=33.82 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=21.4
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcceE
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
.||+||.+...| .....+..|.+||.-++
T Consensus 13 ~Cp~C~~~~lv~------D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 13 TCPNHPDAILVE------DYRAGDMICPECGLVVG 41 (58)
T ss_dssp SBTTBSSSCCEE------CSSSCCEECTTTCCEEC
T ss_pred cCcCCCCCceeE------eCCCCeEEeCCCCCEEe
Confidence 599999876444 13456799999987664
No 21
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=83.34 E-value=0.54 Score=41.70 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=33.5
Q ss_pred hhhhccceeeeecCCCCCccccceeeccCCCC----CCCCccccCCCCcce
Q 045112 215 QGLWRNDLVALRGACPNCGEEVFAFVNSDQTK----NSPHRSDCHVCGSLL 261 (296)
Q Consensus 215 t~l~~~D~liLKGpCPNCGeEv~sFfgtv~s~----~~~n~vkChvC~t~L 261 (296)
+...++|..=|+=.||.|++++. |+++... -..+...|++|+..+
T Consensus 11 DeeRfr~c~~l~l~Cp~C~~~~~--F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 11 DVERFKDTVTLELSCPSCDKRFP--FGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp CTTTTTTCCCEEEECTTTCCEEE--ECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred HHHHhCcCceeEEECCCCCCccC--CCCcccCCCcccccccccCCCCCCcC
Confidence 34667999999999999999864 5554432 145678899999864
No 22
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=83.26 E-value=0.68 Score=36.72 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=28.9
Q ss_pred ceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEE
Q 045112 221 DLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEF 263 (296)
Q Consensus 221 D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~f 263 (296)
+---++--||.|+++...| +.+...+.|.+|++.|.-
T Consensus 31 nS~Fm~VkCp~C~~~~~VF------ShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 31 NSFFMDVKCQGCFNITTVF------SHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp --CEEEEECTTTCCEEEEE------TTCSSCCCCSSSCCCCSC
T ss_pred CCcEeEEECCCCCCeeEEE------ecCCcEEEccCCCCEeec
Confidence 3355777899999999888 366778999999998854
No 23
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=79.48 E-value=0.65 Score=39.85 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=19.0
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
+--|++||-- |-|...+ . +||+||.+-
T Consensus 155 ~~~C~~CG~~---~~g~~~p----~--~CP~C~~~k 181 (191)
T 1lko_A 155 KWRCRNCGYV---HEGTGAP----E--LCPACAHPK 181 (191)
T ss_dssp EEEETTTCCE---EEEEECC----S--BCTTTCCBG
T ss_pred eEEECCCCCE---eeCCCCC----C--CCCCCcCCH
Confidence 6779999954 3354433 1 999999863
No 24
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=79.09 E-value=0.75 Score=34.71 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=23.7
Q ss_pred eeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEe
Q 045112 224 ALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFR 264 (296)
Q Consensus 224 iLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fd 264 (296)
-+.=.|++||.++--= +...+.|..||..+.|-
T Consensus 26 ~v~Y~C~~CG~~~e~~--------~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 26 TLKYICAECSSKLSLS--------RTDAVRCKDCGHRILLK 58 (70)
T ss_dssp CCCEECSSSCCEECCC--------TTSTTCCSSSCCCCCBC
T ss_pred eEEEECCCCCCcceeC--------CCCCccCCCCCceEeEe
Confidence 3445699999997421 33557899999977764
No 25
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.65 E-value=0.98 Score=33.74 Aligned_cols=32 Identities=19% Similarity=0.527 Sum_probs=25.2
Q ss_pred eecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEe
Q 045112 225 LRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFR 264 (296)
Q Consensus 225 LKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fd 264 (296)
++=-|..||.||- + .....++|..||..+.|-
T Consensus 20 v~Y~C~~Cg~~~~-----l---~~~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 20 MIYLCADCGARNT-----I---QAKEVIRCRECGHRVMYK 51 (63)
T ss_dssp CCCBCSSSCCBCC-----C---CSSSCCCCSSSCCCCCBC
T ss_pred eEEECCCCCCeee-----c---CCCCceECCCCCcEEEEE
Confidence 5567999999986 1 234679999999999884
No 26
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=77.39 E-value=1.2 Score=34.77 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=27.9
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCcceEEeccee
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTKVE 268 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~ve 268 (296)
=.||.|+.|.-.=+.-++. .....+.|.+|+.. |++++.
T Consensus 24 F~CPfCnh~~sV~vkidk~-~~~g~l~C~~Cg~~--~~~~i~ 62 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRA-RNTGVISCTVCLEE--FQTPIT 62 (85)
T ss_dssp CCCTTTCCSSCEEEEEETT-TTEEEEEESSSCCE--EEEECC
T ss_pred EcCCCCCCCCeEEEEEEcc-CCEEEEEcccCCCe--EEeccC
Confidence 3799999997555554444 55789999999975 444543
No 27
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=74.99 E-value=1.6 Score=35.79 Aligned_cols=29 Identities=28% Similarity=0.604 Sum_probs=19.7
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCc
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t 259 (296)
-||+||++...-. +.+.....-.|+.|+.
T Consensus 5 ~C~~CG~~~~~~~---~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 5 FCSQCGGEVILRI---PEGDTLPRYICPKCHT 33 (189)
T ss_dssp BCTTTCCBCEEEC---CTTCSSCEEEETTTTE
T ss_pred cCchhCCcccccc---ccCCCCcceECCCCCC
Confidence 4999999987433 2223445667999984
No 28
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=73.97 E-value=1.5 Score=41.84 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=33.1
Q ss_pred Hhhhhccce--eeeecCCCCCcccc--cee-eccCCCCC--------CCCccccCCCCcceEE
Q 045112 214 LQGLWRNDL--VALRGACPNCGEEV--FAF-VNSDQTKN--------SPHRSDCHVCGSLLEF 263 (296)
Q Consensus 214 Lt~l~~~D~--liLKGpCPNCGeEv--~sF-fgtv~s~~--------~~n~vkChvC~t~L~f 263 (296)
|..-..+|+ -+.+-||+.||.+- ..+ .|...+.. .....+|+.|+....|
T Consensus 105 LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rF 167 (335)
T 1x3z_A 105 LLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRF 167 (335)
T ss_dssp HHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEE
T ss_pred HHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccccc
Confidence 444445664 46789999999763 455 56544322 2444679999999887
No 29
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=73.44 E-value=2 Score=36.41 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=23.3
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEe
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFR 264 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fd 264 (296)
.--|||||.+........+.-.......|+.||..|+-.
T Consensus 78 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~ 116 (166)
T 3ir9_A 78 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVT 116 (166)
T ss_dssp EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEE
T ss_pred EEECCCCCceeEEEeecChhhcccccccccccCccchhh
Confidence 345999998765544322211122344799999988643
No 30
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=73.22 E-value=2.1 Score=30.14 Aligned_cols=36 Identities=14% Similarity=0.362 Sum_probs=24.8
Q ss_pred ecCCCCCccccceeecc-CCCC--CCCCccccCCCCcce
Q 045112 226 RGACPNCGEEVFAFVNS-DQTK--NSPHRSDCHVCGSLL 261 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgt-v~s~--~~~n~vkChvC~t~L 261 (296)
.-+||+||.+.-.||-. ..+. ..+--++|.+|+-.-
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 35899999988888852 2222 244557999998643
No 31
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=72.15 E-value=1.9 Score=30.96 Aligned_cols=30 Identities=33% Similarity=0.758 Sum_probs=21.7
Q ss_pred eecCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 225 LRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 225 LKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
+.--||.||..++ +. ...++..|..|+-..
T Consensus 17 ~~~fCPkCG~~~~--ma-----~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVF--LA-----EHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCC--CE-----ECSSEEECTTTCCCE
T ss_pred ccccCcCCCCcee--Ee-----ccCCEEECCCCCCEE
Confidence 4678999999773 22 113589999999874
No 32
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.18 E-value=2.4 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=15.1
Q ss_pred CCccccCCCCc-ceEEecc
Q 045112 249 PHRSDCHVCGS-LLEFRTK 266 (296)
Q Consensus 249 ~n~vkChvC~t-~L~fds~ 266 (296)
.+..+|++|+. .|+||.+
T Consensus 3 ~~~~~CP~C~~~~l~~d~~ 21 (50)
T 1pft_A 3 NKQKVCPACESAELIYDPE 21 (50)
T ss_dssp SSCCSCTTTSCCCEEEETT
T ss_pred CccEeCcCCCCcceEEcCC
Confidence 45678999999 9999964
No 33
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=69.40 E-value=2.1 Score=32.82 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=23.7
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcceE
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
.-.||+|+..|.. +.....+...|..|+..+.
T Consensus 5 ~~~c~~c~~~n~~-----p~~~~~~~~~~~~~~~~~~ 36 (148)
T 3p2a_A 5 NTVCTACMATNRL-----PEERIDDGAKCGRCGHSLF 36 (148)
T ss_dssp EEECTTTCCEEEE-----ESSCSCSCCBCTTTCCBTT
T ss_pred EEECcccccccCC-----CCcccccCCcchhcCCccc
Confidence 4459999998743 3445667788999999763
No 34
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=67.00 E-value=2.3 Score=33.71 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=21.8
Q ss_pred eeeeecCCCCCccccceeeccCCCCCCCCcc-ccCCCCcce
Q 045112 222 LVALRGACPNCGEEVFAFVNSDQTKNSPHRS-DCHVCGSLL 261 (296)
Q Consensus 222 ~liLKGpCPNCGeEv~sFfgtv~s~~~~n~v-kChvC~t~L 261 (296)
..-...-|++||.+.-. +.... +|+.||...
T Consensus 69 ~~p~~~~C~~CG~~~e~---------~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKP---------NALDYGVCEKCHSKN 100 (119)
T ss_dssp EECCEEECSSSSCEECS---------CCSTTCCCSSSSSCC
T ss_pred eccceEEcCCCCCEEeC---------CCCCCCcCccccCCC
Confidence 34457789999987432 23456 899999873
No 35
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=66.58 E-value=2.9 Score=36.40 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=19.1
Q ss_pred eecCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 225 LRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 225 LKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
-+.-|++||-- |-| + .+ -+||+||..-
T Consensus 170 ~~~~C~~CG~i---~~g-~----~p--~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYI---HKG-E----DF--EKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCE---EES-S----CC--SBCTTTCCBG
T ss_pred cEEEECCCCCE---EcC-c----CC--CCCCCCCCCh
Confidence 47889999954 334 2 22 6999999863
No 36
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=65.86 E-value=2.5 Score=32.78 Aligned_cols=29 Identities=31% Similarity=0.677 Sum_probs=20.1
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
+=+||+||.+ ..|..- +..-+|+.|+...
T Consensus 27 ~y~Cp~CG~~--~v~r~a-----tGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGED--RVDRQG-----TGIWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCE--EEEEEE-----TTEEEETTTCCEE
T ss_pred cCcCCCCCCc--ceeccC-----CCeEECCCCCCEe
Confidence 5689999984 344322 3478999999864
No 37
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=65.81 E-value=2.2 Score=31.29 Aligned_cols=20 Identities=40% Similarity=1.051 Sum_probs=14.2
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCC
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCG 258 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~ 258 (296)
-.||||||-. -+|.+ |.+||
T Consensus 31 ~~c~~cGe~~-----------~~H~v-c~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMK-----------PPHTV-CPECG 50 (60)
T ss_dssp EECTTTCCEE-----------CTTSC-CTTTC
T ss_pred eECCCCCCee-----------cceEE-cCCCC
Confidence 4699999853 24544 88888
No 38
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=65.66 E-value=2.3 Score=34.99 Aligned_cols=33 Identities=27% Similarity=0.660 Sum_probs=22.9
Q ss_pred cceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 220 NDLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 220 ~D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
+....=.-.|+.||++--.+ .....|+.||.++
T Consensus 126 ~~~~~~~y~C~~Cg~~~~~~---------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 126 KKVIKWRYVCIGCGRKFSTL---------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCCCCEEESSSCCEESSC---------CGGGBCTTTCCBE
T ss_pred cccccEEEECCCCCCcccCC---------CCCCcCCCCCCcc
Confidence 44444557899999865332 3345899999986
No 39
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.42 E-value=3.1 Score=38.77 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=23.6
Q ss_pred eeecCCCCCccccc-eeec---cCCC-----------CCCCCccccCCCCcc
Q 045112 224 ALRGACPNCGEEVF-AFVN---SDQT-----------KNSPHRSDCHVCGSL 260 (296)
Q Consensus 224 iLKGpCPNCGeEv~-sFfg---tv~s-----------~~~~n~vkChvC~t~ 260 (296)
--+|-||.||..=. +.+. +..+ -=.-.+++|++||..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45899999998654 4442 1111 114468899999975
No 40
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=63.29 E-value=3.4 Score=35.18 Aligned_cols=26 Identities=38% Similarity=0.879 Sum_probs=16.7
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCcceE
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
--|||||--.. + ..|. +|++||.+-.
T Consensus 139 ~~C~~CG~i~~---~-----~~p~--~CP~Cg~~~~ 164 (170)
T 3pwf_A 139 YICPICGYTAV---D-----EAPE--YCPVCGAPKE 164 (170)
T ss_dssp EECTTTCCEEE---S-----CCCS--BCTTTCCBGG
T ss_pred eEeCCCCCeeC---C-----CCCC--CCCCCCCCHH
Confidence 44999995332 2 2222 9999997643
No 41
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=62.61 E-value=4 Score=31.61 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=23.9
Q ss_pred eecCCCCCccccceeeccCCCCCCCCccccCCCCc
Q 045112 225 LRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 225 LKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t 259 (296)
.++.||-|++..-||.=. ..++...|+.||.
T Consensus 36 ~~~~CPfh~e~~pSf~V~----~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 36 YFGLCPFHGEKTPSFSVS----PEKQIFHCFGCGA 66 (103)
T ss_dssp EEECCSSSCCSSCCEEEE----TTTTEEEETTTCC
T ss_pred EEEECCCCCCCCCcEEEE----cCCCEEEECCCCC
Confidence 568999999888776432 2467899999985
No 42
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=58.51 E-value=3.9 Score=36.90 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=20.2
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCc
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t 259 (296)
-|||.||+++..-.- ..+...=|++|..
T Consensus 243 ~pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKV-----AGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEE-----TTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEE-----CCCceEECCCCCC
Confidence 479999999864321 2467789999975
No 43
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.60 E-value=6.9 Score=31.14 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=23.7
Q ss_pred ecCCCCCccccceeecc--CCCC-CCCCccccCCCCcc
Q 045112 226 RGACPNCGEEVFAFVNS--DQTK-NSPHRSDCHVCGSL 260 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgt--v~s~-~~~n~vkChvC~t~ 260 (296)
+-.||+||...-.||-. .+.. ..+--.+|.+||-.
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 72 DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp CSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred ccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 36899999887777742 2222 34555889999853
No 44
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=56.74 E-value=5.9 Score=34.05 Aligned_cols=36 Identities=19% Similarity=0.544 Sum_probs=25.6
Q ss_pred CCCCCccccceeecc--CCCC-CCCCccccCCCCcceEE
Q 045112 228 ACPNCGEEVFAFVNS--DQTK-NSPHRSDCHVCGSLLEF 263 (296)
Q Consensus 228 pCPNCGeEv~sFfgt--v~s~-~~~n~vkChvC~t~L~f 263 (296)
.||.||...-.||-. .++. ..+--+.|.+||-.-.|
T Consensus 139 ~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 139 TCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWKF 177 (178)
T ss_dssp CCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEECC
T ss_pred CCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeecc
Confidence 899999988888753 2222 35667899999976433
No 45
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=56.36 E-value=4.6 Score=37.20 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=22.4
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcceE
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
...||+||..+-..+- ..+..+.-|..||.-++
T Consensus 21 ~~~Cp~Cg~~~~~iv~----D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVE----RFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCC----CSSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEE----ECCCCCEecCCCCeEcc
Confidence 4469999986322211 13456889999999885
No 46
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=56.01 E-value=6.2 Score=32.93 Aligned_cols=36 Identities=36% Similarity=0.686 Sum_probs=27.5
Q ss_pred eeeeecCCCC--Cccccc-eeeccCCCCCCCCccccCCCCcceEEec
Q 045112 222 LVALRGACPN--CGEEVF-AFVNSDQTKNSPHRSDCHVCGSLLEFRT 265 (296)
Q Consensus 222 ~liLKGpCPN--CGeEv~-sFfgtv~s~~~~n~vkChvC~t~L~fds 265 (296)
..-+.-.||+ ||..+| +.- -++.-|..|+-...|++
T Consensus 114 ~~~~~~~c~~~~cg~g~fma~h--------~~r~~cgkc~~t~~~~~ 152 (152)
T 3u5c_f 114 VTKLRRECSNPTCGAGVFLANH--------KDRLYCGKCHSVYKVNA 152 (152)
T ss_dssp EECCSCBCCSTTSCSSSBEEEC--------SSCEEESSSSSCCEECC
T ss_pred EEECcCcCCCccCCCceEeccc--------CCCcccCCCceEEEecC
Confidence 3557889999 999887 221 24788999999988864
No 47
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=54.71 E-value=5.6 Score=35.90 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=20.4
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCc
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t 259 (296)
-|||.||+++..-.- ..+...=|++|..
T Consensus 236 ~pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVV-----AGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEES-----SSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEE-----CCCceEECCCCCC
Confidence 479999999864321 2467789999975
No 48
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=54.39 E-value=4.9 Score=36.42 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=18.9
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCC
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCG 258 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~ 258 (296)
|||.||+++..-.- ..+...-|++|.
T Consensus 247 pC~~CG~~I~~~~~-----~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTPIEKTVV-----AGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCBCEEEEE-----TTEEEEECTTTC
T ss_pred CCCCCCCeEEEEEE-----CCCCeEECCCCC
Confidence 89999998863211 246778899996
No 49
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=54.13 E-value=2 Score=33.42 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=20.9
Q ss_pred CCCCCccccceeec-----cCCCC----CCCCccccCCCCcce
Q 045112 228 ACPNCGEEVFAFVN-----SDQTK----NSPHRSDCHVCGSLL 261 (296)
Q Consensus 228 pCPNCGeEv~sFfg-----tv~s~----~~~n~vkChvC~t~L 261 (296)
-||.||.++...-. +.++. .+.+-..|.+||..+
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEE
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEe
Confidence 49999987543211 12222 123567899999875
No 50
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=53.81 E-value=5 Score=36.16 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=19.3
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCc
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t 259 (296)
-|||.||+++..-.- ..+...=|++|..
T Consensus 241 ~pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 241 EPCRVCGTPIVATKH-----AQRATFYCRQCQK 268 (268)
T ss_dssp SBCTTTCCBCEEEEE-----TTEEEEECTTTCC
T ss_pred CCCCCCCCEeeEEEE-----CCCceEECCCCCC
Confidence 479999998864321 2466788999863
No 51
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=53.80 E-value=5 Score=35.97 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=18.8
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCc
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t 259 (296)
|||.||+++..-.- ..+...-|++|..
T Consensus 236 pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 236 PCERCGSIIEKTTL-----SSRPFYWCPGCQH 262 (262)
T ss_dssp BCTTTCCBCEEEEE-----TTEEEEECTTTCC
T ss_pred CCCCCCCEeEEEEE-----CCCCeEECCCCCC
Confidence 79999998863221 2466788999863
No 52
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.61 E-value=4.9 Score=28.82 Aligned_cols=29 Identities=31% Similarity=0.678 Sum_probs=21.1
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEecc
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTK 266 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~ 266 (296)
|--||.|+.. ..+.-.+|..||.. .++-|
T Consensus 14 k~iCpkC~a~-----------~~~gaw~CrKCG~~-~lr~k 42 (51)
T 3j21_g 14 KYVCLRCGAT-----------NPWGAKKCRKCGYK-RLRPK 42 (51)
T ss_dssp EEECTTTCCE-----------ECTTCSSCSSSSSC-CCEEE
T ss_pred CccCCCCCCc-----------CCCCceecCCCCCc-ccccc
Confidence 3459999987 34666789999987 55543
No 53
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=52.94 E-value=6.3 Score=36.98 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=24.2
Q ss_pred eecCCCCCccccceeeccCCCCCCCCccccCCCCc
Q 045112 225 LRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 225 LKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t 259 (296)
.+|.||-|++..-||.=+ ..++..+|+.||.
T Consensus 33 ~~~~CPfh~ektpSf~V~----~~k~~~~CFgCg~ 63 (407)
T 2au3_A 33 YRTNCPFHPDDTPSFYVS----PSKQIFKCFGCGV 63 (407)
T ss_dssp EEECCSSSCCSSCCEEEE----TTTTEEEETTTCC
T ss_pred EEeeCcCCCCCCCeEEEE----CCCCEEEECCCCC
Confidence 579999999988887432 2346899999985
No 54
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=52.84 E-value=3.9 Score=30.28 Aligned_cols=12 Identities=42% Similarity=1.221 Sum_probs=6.9
Q ss_pred ecCCCCCccccc
Q 045112 226 RGACPNCGEEVF 237 (296)
Q Consensus 226 KGpCPNCGeEv~ 237 (296)
|..||+||++..
T Consensus 18 k~~CP~CG~~T~ 29 (60)
T 2apo_B 18 KEICPKCGEKTV 29 (60)
T ss_dssp SSBCSSSCSBCB
T ss_pred cccCcCCCCcCC
Confidence 555666665544
No 55
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=52.34 E-value=5.8 Score=25.59 Aligned_cols=22 Identities=32% Similarity=0.874 Sum_probs=16.6
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
.||+|+.-||+. +..|..|+++
T Consensus 8 ~C~~C~~~Nfa~-----------R~~C~~C~~p 29 (33)
T 2k1p_A 8 QCKTCSNVNWAR-----------RSECNMCNTP 29 (33)
T ss_dssp BCSSSCCBCCTT-----------CSBCSSSCCB
T ss_pred ccCCCCCccccc-----------cccccccCCc
Confidence 499999888753 5678888765
No 56
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=51.69 E-value=4.2 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.791 Sum_probs=20.1
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcceEEec
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRT 265 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds 265 (296)
-|| ||.-.+ .. ...-..+|+ ||+.+.++.
T Consensus 6 ~C~-C~~~~~--~~-----~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 6 RCD-CGRALY--SR-----EGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EET-TSCCEE--EE-----TTCSEEEET-TTEEEECCS
T ss_pred ECC-CCCEEE--Ec-----CCCcEEECC-CCCeeeece
Confidence 389 997633 22 245678998 999998753
No 57
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=51.69 E-value=8.2 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=24.8
Q ss_pred ecCCCCCccccceeecc-CCCC--CCCCccccCCCCcc
Q 045112 226 RGACPNCGEEVFAFVNS-DQTK--NSPHRSDCHVCGSL 260 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgt-v~s~--~~~n~vkChvC~t~ 260 (296)
.-.||+||.+--.||-. ..+. ..+--++|.+|+-.
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE
Confidence 57899999988788752 2222 34556899999864
No 58
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=50.05 E-value=6.6 Score=30.36 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.1
Q ss_pred CCccccCCCCcceEEeccee
Q 045112 249 PHRSDCHVCGSLLEFRTKVE 268 (296)
Q Consensus 249 ~n~vkChvC~t~L~fds~ve 268 (296)
.++.+|++||..++||..+.
T Consensus 25 ~~~y~Cp~CG~~~v~r~atG 44 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTG 44 (83)
T ss_dssp HSCEECSSSCCEEEEEEETT
T ss_pred cccCcCCCCCCcceeccCCC
Confidence 46789999999999998753
No 59
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=49.24 E-value=6.7 Score=36.61 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=30.5
Q ss_pred hhhhccce--eeeecCCCCCccccceeecc-CC--------CCCCCCccccCCCCcceEE
Q 045112 215 QGLWRNDL--VALRGACPNCGEEVFAFVNS-DQ--------TKNSPHRSDCHVCGSLLEF 263 (296)
Q Consensus 215 t~l~~~D~--liLKGpCPNCGeEv~sFfgt-v~--------s~~~~n~vkChvC~t~L~f 263 (296)
-.-..+|+ -.++-||++||.+... .|. .. +........|++|+....|
T Consensus 68 l~wFk~~fF~~~~~P~c~~C~~~~~~-~g~~~~~~~~e~~~~a~~vE~y~c~~c~~~~~~ 126 (295)
T 2f4m_A 68 LHWFKEEFFRWVNNIVCSKCGGETRS-RDEALLPNDDELKWGAKNVENHYCDACQLSNRF 126 (295)
T ss_dssp HHHHHHTTCEECSSCCCTTTCCCCEE-CSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEE
T ss_pred HHHHHhcCCEEeCCCCCcccCCcccc-cCCCCCCChhHhhcccchhheeeccccCceeec
Confidence 33333444 4788999999988764 342 11 1233445789999988776
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.19 E-value=4.2 Score=31.37 Aligned_cols=12 Identities=50% Similarity=1.317 Sum_probs=9.9
Q ss_pred ecCCCCCccccc
Q 045112 226 RGACPNCGEEVF 237 (296)
Q Consensus 226 KGpCPNCGeEv~ 237 (296)
.|+||-||.++-
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 789999998754
No 61
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=49.18 E-value=4.5 Score=26.73 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=22.5
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
-||.|+.+...+..- +...-.+|..||..-
T Consensus 2 lC~~C~~peT~l~~~----~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKE----GRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEE----TTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEe----CCcEEEEhhcCCCcc
Confidence 399999998887762 245678899998653
No 62
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=49.14 E-value=7.1 Score=29.30 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=31.1
Q ss_pred ecCCCCCccccceeecc-------CCCCC----CCCccccCCCCcceEEecceeeccccCCceeEEe
Q 045112 226 RGACPNCGEEVFAFVNS-------DQTKN----SPHRSDCHVCGSLLEFRTKVEQSSSRLGRQWVYG 281 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgt-------v~s~~----~~n~vkChvC~t~L~fds~ve~s~s~~~r~w~~G 281 (296)
+--|++|| +.|-+. +.++. -+..-+|++|+..=..=.+++...|+....-.||
T Consensus 7 ~y~C~vCG---yiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F~~~~~~~sgf~en~~yg 70 (70)
T 1dx8_A 7 KYECEACG---YIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKYG 70 (70)
T ss_dssp CEEETTTC---CEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGEEECCCBCCCSCCCSCCC
T ss_pred eEEeCCCC---EEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHHceEccccCCChhhhcccC
Confidence 45699999 445431 33322 3455689999986444444555566665554444
No 63
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=48.83 E-value=7.6 Score=24.86 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=16.0
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
.||+|+.-||+ .+..|..|++.
T Consensus 7 ~C~~C~~~Nfa-----------~r~~C~~C~~p 28 (32)
T 2lk0_A 7 LCNKCCLNNFR-----------KRLKCFRCGAD 28 (32)
T ss_dssp ECTTTCCEEET-----------TCCBCTTTCCB
T ss_pred CcCcCcCCcCh-----------hcceecCCCCc
Confidence 49999988875 24667777764
No 64
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=48.61 E-value=8.6 Score=34.36 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=24.7
Q ss_pred eeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEecceee
Q 045112 223 VALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTKVEQ 269 (296)
Q Consensus 223 liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~ve~ 269 (296)
....=-|++||.+.+.... .+.-+.-.+|++|+..- |....++
T Consensus 131 ~~~~f~C~~C~~~~~v~~~---~~~~~~P~~Cp~C~~~~-f~l~~~~ 173 (279)
T 1ltl_A 131 VKAVFECRGCMRHHAVTQS---TNMITEPSLCSECGGRS-FRLLQDE 173 (279)
T ss_dssp EEEEEEETTTCCEEEEECS---SSSCCCCSCCTTTCCCC-EEECGGG
T ss_pred EEEEEEcCCCCCEEEEEec---CCcccCCCcCCCCCCCC-cEEeccc
Confidence 3334479999987543322 22223335899999874 5443333
No 65
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=48.13 E-value=12 Score=31.54 Aligned_cols=32 Identities=28% Similarity=0.706 Sum_probs=25.3
Q ss_pred cceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 220 NDLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 220 ~D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
+++=.+..-|++||++..- .+ ++.+|++||..
T Consensus 134 ~~lGvv~a~~~~~g~~m~~--------~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 134 EEMGVLRALCSNCKTEMVR--------EG-DILKCPECGRV 165 (179)
T ss_dssp TTCEEEECBCTTTCCBCEE--------CS-SSEECSSSCCE
T ss_pred CCCCEEEecccccCCceEE--------CC-CEEECCCCCCE
Confidence 6777889999999988732 22 78999999964
No 66
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=47.64 E-value=7.6 Score=31.95 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=22.9
Q ss_pred eeeeecCCCCCccccce-eec-cCCCCCCCC----------ccccCCCCcceE
Q 045112 222 LVALRGACPNCGEEVFA-FVN-SDQTKNSPH----------RSDCHVCGSLLE 262 (296)
Q Consensus 222 ~liLKGpCPNCGeEv~s-Ffg-tv~s~~~~n----------~vkChvC~t~L~ 262 (296)
..-.+.-|+|||.+... -.. ......... ..+|+.||+.-.
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred ecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 34557889999977431 000 011111112 578999998744
No 67
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=47.53 E-value=5.5 Score=29.53 Aligned_cols=14 Identities=43% Similarity=1.025 Sum_probs=8.6
Q ss_pred eecCCCCCccccce
Q 045112 225 LRGACPNCGEEVFA 238 (296)
Q Consensus 225 LKGpCPNCGeEv~s 238 (296)
||..||+||++..+
T Consensus 16 Lk~~CP~CG~~t~~ 29 (60)
T 2aus_D 16 LKETCPVCGEKTKV 29 (60)
T ss_dssp SSSBCTTTCSBCEE
T ss_pred ccccCcCCCCccCC
Confidence 45666777666554
No 68
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=46.82 E-value=9.5 Score=33.28 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEe
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFR 264 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fd 264 (296)
...|+||+.+.- ....+..-|++|+.....+
T Consensus 10 ~~~Cw~C~~~~~--------~~~~~~~fC~~c~~~q~~~ 40 (207)
T 3bvo_A 10 YPRCWNCGGPWG--------PGREDRFFCPQCRALQAPD 40 (207)
T ss_dssp -CBCSSSCCBCC--------SSCSCCCBCTTTCCBCCCC
T ss_pred CCCCCCCCCCcc--------cccccccccccccccCCCC
Confidence 468999997642 1345678899998765443
No 69
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=46.00 E-value=9.3 Score=34.19 Aligned_cols=27 Identities=22% Similarity=0.583 Sum_probs=20.5
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
--||.||++... ..+...-.|+.|+..
T Consensus 108 ~fC~~CG~~~~~-------~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 108 KYCGYCGHEMYP-------SKTEWAMLCSHCRER 134 (269)
T ss_dssp SBCTTTCCBEEE-------CSSSSCEEESSSSCE
T ss_pred CccccCCCcCcc-------CCCceeeeCCCCCCE
Confidence 479999998764 135567799999864
No 70
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=45.55 E-value=4.4 Score=27.28 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCCCcccccee--eccCCCCCCCCccccCCCCcceEEecceeecc
Q 045112 228 ACPNCGEEVFAF--VNSDQTKNSPHRSDCHVCGSLLEFRTKVEQSS 271 (296)
Q Consensus 228 pCPNCGeEv~sF--fgtv~s~~~~n~vkChvC~t~L~fds~ve~s~ 271 (296)
.||.||..-..- +.-+. ......+|..|+......+.+.+..
T Consensus 16 ~C~~C~k~F~~~~~l~~~H--~~~k~~~C~~C~k~f~~~~~~~~~~ 59 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFD--PMTGTFRCTFCHTEVEEDESAMPKK 59 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEE--TTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred cCCCCCchhccHHHhHhhc--CCCCCEECCCCCCccccCccccccc
Confidence 599998632110 11111 2234589999999988877766543
No 71
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=44.98 E-value=8.6 Score=41.40 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=24.7
Q ss_pred cCCCCCccccceee--ccCCCCCCCCccccCCCCcceE
Q 045112 227 GACPNCGEEVFAFV--NSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~sFf--gtv~s~~~~n~vkChvC~t~L~ 262 (296)
=-||||.- .-|+ |++.++-+--.-+|++||+.|.
T Consensus 503 y~c~~c~~--~ef~~~~~~~~g~dlp~k~cp~cg~~~~ 538 (1041)
T 3f2b_A 503 YVCPNCKH--SEFFNDGSVGSGFDLPDKNCPRCGTKYK 538 (1041)
T ss_dssp EECTTTCC--EEECCSSCCSCGGGSCCCBCTTTCCBCE
T ss_pred ccCccccc--cccccccccccccCCccccCcccccccc
Confidence 34999985 3454 3455556777889999999876
No 72
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=44.93 E-value=11 Score=34.72 Aligned_cols=37 Identities=19% Similarity=0.523 Sum_probs=26.6
Q ss_pred cCCCCCccccceeec--cCCCC-CCCCccccCCCCcceEE
Q 045112 227 GACPNCGEEVFAFVN--SDQTK-NSPHRSDCHVCGSLLEF 263 (296)
Q Consensus 227 GpCPNCGeEv~sFfg--tv~s~-~~~n~vkChvC~t~L~f 263 (296)
-.||.||...-.||- +.+.. ..+--+.|.+||-.-.|
T Consensus 269 ~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred ccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 479999998888875 33332 35667899999976544
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=44.29 E-value=16 Score=35.50 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=34.1
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEecceeeccccCCc--------eeEEeEEEEEec
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTKVEQSSSRLGR--------QWVYGRIYLLSR 288 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~ve~s~s~~~r--------~w~~GRiYlv~~ 288 (296)
+..|+||+.++-. +........+.-|+.|+..+.|...+....--.+| +=.+|.||++..
T Consensus 34 ~~~c~~c~~~~~~---~~~~~~~~~~~~c~~c~~~~~~~~~~~~g~~~~~~y~i~~~lg~G~~g~Vy~a~~ 101 (681)
T 2pzi_A 34 KRFCWNCGRPVGR---SDSETKGASEGWCPYCGSPYSFLPQLNPGDIVAGQYEVKGCIAHGGLGWIYLALD 101 (681)
T ss_dssp GCBCTTTCCBCSC---C-----CCSEEECTTTCCEEECSCSSCTTCEETTTEEEEEEEEEETTEEEEEEEE
T ss_pred cccCccCCCcCCC---cccCCCcccCCcCCCCCCccccCCCCCCCCEeCCceEEEEEEeeCCCeEEEEEEE
Confidence 4579999988632 11111233456799999999887665432211111 123577888754
No 74
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=43.27 E-value=3.4 Score=33.03 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=18.3
Q ss_pred CCccccCCCCcceEEecceeecc
Q 045112 249 PHRSDCHVCGSLLEFRTKVEQSS 271 (296)
Q Consensus 249 ~n~vkChvC~t~L~fds~ve~s~ 271 (296)
-|-+||+.||..|.++.-+||-.
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML 28 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEML 28 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHST
T ss_pred cccccCCcCCCccCHHHHHHHHH
Confidence 46789999999999988888754
No 75
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=42.19 E-value=13 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCCccccceeeccCCCCCCCCccccCCCCcceEEecce
Q 045112 229 CPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTKV 267 (296)
Q Consensus 229 CPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~v 267 (296)
||+|+.-+..- .....+.|+.|+...=|.=++
T Consensus 28 CP~C~~~~~~~-------~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 28 CAQCSFGFIYE-------REQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CSSSCCCEECC-------CSCSCEECTTTCCEECSSSCS
T ss_pred CcCCCchheec-------CCCCceEeCCCCCccccccCC
Confidence 99999866321 124569999999877665554
No 76
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=41.78 E-value=14 Score=34.32 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=20.8
Q ss_pred CCCCCcccccee-eccCCCCCCCCccccCCCCc
Q 045112 228 ACPNCGEEVFAF-VNSDQTKNSPHRSDCHVCGS 259 (296)
Q Consensus 228 pCPNCGeEv~sF-fgtv~s~~~~n~vkChvC~t 259 (296)
|||.||+.+..- ++. ..+..+-|+.|..
T Consensus 253 pC~~CGt~I~~~~~g~----~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGE----NSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEECSST----TCCCEEECTTTSC
T ss_pred CCCCCCCEEEEEEecC----CCCCEEECCCccc
Confidence 999999988742 321 2377889999975
No 77
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.04 E-value=11 Score=29.83 Aligned_cols=15 Identities=13% Similarity=0.503 Sum_probs=12.5
Q ss_pred CCCCCccccceeecc
Q 045112 228 ACPNCGEEVFAFVNS 242 (296)
Q Consensus 228 pCPNCGeEv~sFfgt 242 (296)
.||.||.++..+..+
T Consensus 92 ~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 92 VCEKCHSKNVIITQG 106 (119)
T ss_dssp CCSSSSSCCCEEEES
T ss_pred cCccccCCCcEEecC
Confidence 899999998777654
No 78
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=40.41 E-value=16 Score=31.13 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=31.6
Q ss_pred HHHHHHH-HHHHHHHhhcC-----CCccchhhhHHHHHHHhHhC
Q 045112 72 KETLEAL-YRQARDAYYSG-----KPLIVDDMFDRVELKLRWYG 109 (296)
Q Consensus 72 ~~elE~~-flqA~~AY~~G-----kPimsDeeFD~LK~kLk~~G 109 (296)
++..+.. |.+...||.+| ++.++++.|+.++.++++.+
T Consensus 58 l~~ak~~iy~~Iq~A~~~gD~~~Lr~~~t~~~~~~~~~~i~~r~ 101 (194)
T 2cw9_A 58 LKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAK 101 (194)
T ss_dssp HHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4455566 78888999999 68999999999999998753
No 79
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=39.08 E-value=46 Score=26.29 Aligned_cols=49 Identities=8% Similarity=-0.018 Sum_probs=36.9
Q ss_pred CCCeeEeeCCcccccHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhH
Q 045112 57 EGPSCIFVGPLETASKETLEALYRQARDAYYSGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 57 eGpsc~~~~p~e~~t~~elE~~flqA~~AY~~GkPimsDeeFD~LK~kLk~ 107 (296)
.|.-.+...+...++.+++++...+......++ =++++|+++.|..++.
T Consensus 82 ~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~--~it~~el~~ak~~~~~ 130 (197)
T 3ih6_A 82 PGLAMFGAQLQPGMDQDKALQTLTATLESLSSK--PFSQEELERARSKWLT 130 (197)
T ss_dssp SCEEEEEEECCTTSCHHHHHHHHHHHHHCTTTS--CCCHHHHHHHHHHHHH
T ss_pred CeEEEEEEEECCCCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 455566666644446888888888888777664 2699999999999965
No 80
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=38.81 E-value=13 Score=31.20 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=21.1
Q ss_pred ecCCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 226 RGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
.--||.|+.+-...... +...-.+|..||..
T Consensus 103 yVlC~~C~sPdT~l~k~----~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKE----KKSWYIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSSSCCCSCSS----CSTTTSSCCC----
T ss_pred eeECCCCCCcCcEEEEe----CCeEEEEecCCCCC
Confidence 34699999998877762 35578899999975
No 81
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=38.75 E-value=15 Score=31.17 Aligned_cols=31 Identities=26% Similarity=0.606 Sum_probs=24.4
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
--||.|+.+....... +...-.+|..||..-
T Consensus 105 VlC~~C~sPdT~L~k~----~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKR----DRFHFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBS----SSSBCCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEe----CCEEEEEecCCCCCc
Confidence 3599999999888762 246789999999753
No 82
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=38.07 E-value=11 Score=33.02 Aligned_cols=37 Identities=24% Similarity=0.574 Sum_probs=25.5
Q ss_pred eeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEec
Q 045112 222 LVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRT 265 (296)
Q Consensus 222 ~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds 265 (296)
..-+.-.||+||..+| .. . --++..|.-|+-...|+-
T Consensus 109 v~~~~~~Cp~Cg~g~f--ma-~----h~dR~~CGkC~~t~~~~~ 145 (189)
T 2xzm_9 109 VSLQQKGCPKCGPGIF--MA-K----HYDRHYCGKCHLTLKIDX 145 (189)
T ss_dssp EEECSEECSTTCSSCE--EE-E----CSSCEEETTTCCCBCCHH
T ss_pred EEEccccCCccCCCcc--cc-C----ccCCCccCCceeEEEeec
Confidence 3456789999998765 11 1 112669999998887764
No 83
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=37.74 E-value=39 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=35.7
Q ss_pred eCCcccccHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhH
Q 045112 64 VGPLETASKETLEALYRQARDAYYSGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 64 ~~p~e~~t~~elE~~flqA~~AY~~GkPimsDeeFD~LK~kLk~ 107 (296)
+|+..=+|+.+|.+-|.+=+..|-.|++ ++|+++.-|+.=|+.
T Consensus 9 lG~~~F~s~~~~~~~~k~iL~~y~~g~~-l~~~d~~~l~~lL~~ 51 (104)
T 2k0m_A 9 IAGHEFARKADALAFMKVMLNRYRPGDI-VSTVDGAFLVEALKR 51 (104)
T ss_dssp ETTEEESSHHHHHHHHHHHHHHSCTTEE-CCHHHHHHHHHHHHT
T ss_pred ECCEecCCHHHHHHHHHHHHHhCCCCCc-cCHHHHHHHHHHHHh
Confidence 4888999999999988888888999986 456678888887764
No 84
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=37.50 E-value=17 Score=31.98 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=23.7
Q ss_pred CC--CCCccccceeeccCCCCCCCCccccCCCCcceEEecc
Q 045112 228 AC--PNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTK 266 (296)
Q Consensus 228 pC--PNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~ 266 (296)
-| +.||.+....+.....+.-+.-.+|+.|+..-.|...
T Consensus 143 ~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~ 183 (268)
T 2vl6_A 143 KHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLI 183 (268)
T ss_dssp EEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCBCEEEEC
T ss_pred ECCCCCCCCEEeeeecccCCCcccCCccCCCCCCCCCEEEe
Confidence 79 9999876544211223344445789999985334433
No 85
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=36.80 E-value=16 Score=35.46 Aligned_cols=10 Identities=40% Similarity=1.328 Sum_probs=8.3
Q ss_pred ecCCCCCccc
Q 045112 226 RGACPNCGEE 235 (296)
Q Consensus 226 KGpCPNCGeE 235 (296)
.|.||.||.+
T Consensus 155 ~g~cp~c~~~ 164 (560)
T 3h99_A 155 KGTCPKCKSP 164 (560)
T ss_dssp EEECTTTCCS
T ss_pred CCCCCCCCCc
Confidence 6889999864
No 86
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.70 E-value=23 Score=32.85 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=12.5
Q ss_pred CCccccCCCCcceEEe
Q 045112 249 PHRSDCHVCGSLLEFR 264 (296)
Q Consensus 249 ~n~vkChvC~t~L~fd 264 (296)
-++--|++||+.=+.-
T Consensus 180 ~~~~~CPvCGs~P~~s 195 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG 195 (309)
T ss_dssp TTCSSCTTTCCCEEEE
T ss_pred ccCCCCCCCCCcCcee
Confidence 4667899999987754
No 87
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=34.59 E-value=10 Score=30.80 Aligned_cols=37 Identities=14% Similarity=0.477 Sum_probs=24.2
Q ss_pred ceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 221 DLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 221 D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
+.....-+|| ||.. |.+...+...+ ..+.|..|...+
T Consensus 107 ~~~~f~~~Cr-CG~~-f~i~~~~l~~~--~~v~C~sCSl~~ 143 (155)
T 2l6l_A 107 GDHSFYLSCR-CGGK-YSVSKDEAEEV--SLISCDTCSLII 143 (155)
T ss_dssp TTTEEEEECS-SSCE-EEEETTHHHHC--CEEECSSSSCEE
T ss_pred CCcEEEEcCC-CCCe-EEecHHHhCCC--CEEECCCCceEE
Confidence 3345677999 9965 66665433211 579999998654
No 88
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=34.53 E-value=8.7 Score=28.24 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.3
Q ss_pred CCCCCccccce
Q 045112 228 ACPNCGEEVFA 238 (296)
Q Consensus 228 pCPNCGeEv~s 238 (296)
-||+|||..++
T Consensus 38 ~C~~CGE~~~~ 48 (78)
T 3ga8_A 38 YCVHCEESIMN 48 (78)
T ss_dssp EETTTCCEECC
T ss_pred ECCCCCCEEEC
Confidence 59999998775
No 89
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.46 E-value=18 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=22.4
Q ss_pred cCCCCCccccce----eeccCCC-CCCCCccccCCCCcceE
Q 045112 227 GACPNCGEEVFA----FVNSDQT-KNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~s----Ffgtv~s-~~~~n~vkChvC~t~L~ 262 (296)
..|+.|++++.. .+-...+ .=-++=.+|..|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC
Confidence 469999999984 2211111 01233468999999885
No 90
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=34.45 E-value=18 Score=33.54 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=20.3
Q ss_pred eecCCCCCcc--ccceeeccCCCCCCCCccccCCCCcceE
Q 045112 225 LRGACPNCGE--EVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 225 LKGpCPNCGe--Ev~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
.+--||+||. ++.. +. ....+.-|..||.-++
T Consensus 20 ~~~~Cp~C~~~~~~lv-~D-----~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 20 IVLTCPECKVYPPKIV-ER-----FSEGDVVCALCGLVLS 53 (345)
T ss_dssp --CCCSSCCCSSCCEE-EE-----GGGTEEEETTTCBEEE
T ss_pred cCCcCCCCCCCCCcee-EE-----CCCCcEEeCCCCCCcc
Confidence 3447999997 2321 21 1345789999998775
No 91
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.27 E-value=7.6 Score=34.30 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=30.0
Q ss_pred eecCCCCCccccc-eeeccCCCCCCCCccccCCCCcceEEecceee
Q 045112 225 LRGACPNCGEEVF-AFVNSDQTKNSPHRSDCHVCGSLLEFRTKVEQ 269 (296)
Q Consensus 225 LKGpCPNCGeEv~-sFfgtv~s~~~~n~vkChvC~t~L~fds~ve~ 269 (296)
-.|.|--|...+. +.+-.+.. ...-+-|++||+.|.+....+.
T Consensus 197 ~~~~C~GC~~~lppq~~~~i~~--~~~Iv~Cp~CgRIL~~~~~~~~ 240 (256)
T 3na7_A 197 KKQACGGCFIRLNDKIYTEVLT--SGDMITCPYCGRILYAEGAYES 240 (256)
T ss_dssp BTTBCTTTCCBCCHHHHHHHHH--SSSCEECTTTCCEEECSCC---
T ss_pred eCCccCCCCeeeCHHHHHHHHC--CCCEEECCCCCeeEEeCcchhh
Confidence 3578999999887 55554443 2345899999999998876554
No 92
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=34.10 E-value=18 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=24.7
Q ss_pred eeecCCCCCccc------cceeeccCCCCCCCCccccCCCCcceE
Q 045112 224 ALRGACPNCGEE------VFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 224 iLKGpCPNCGeE------v~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
.|++.+|++-.- ..--||......+.-.+.|.||++.+.
T Consensus 37 ~l~~r~p~~k~y~~~~~~~lDIfG~~~~~~~s~~~~C~nC~R~va 81 (99)
T 3mhs_C 37 LLKTRYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDVS 81 (99)
T ss_dssp HHHHHCTTCCCCCCCTTSCSCTTSCCCCCTTSCEEECTTTCCEEE
T ss_pred HHhccCCCCCCceecCCCCcccCCCcCcccCCCeEECCCCCCCch
Confidence 356677777221 112355455556778899999999764
No 93
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=33.93 E-value=22 Score=23.07 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.0
Q ss_pred CCCCccccceee
Q 045112 229 CPNCGEEVFAFV 240 (296)
Q Consensus 229 CPNCGeEv~sFf 240 (296)
|+.||+.+-...
T Consensus 9 C~~CGnivev~~ 20 (36)
T 1dxg_A 9 CELCGQVVKVLE 20 (36)
T ss_dssp CTTTCCEEEEEE
T ss_pred cCCCCcEEEEEe
Confidence 888888777664
No 94
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.40 E-value=22 Score=25.74 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=21.9
Q ss_pred cCCCCCccccce-eeccCCCCCCCC--ccccCCCCcceE
Q 045112 227 GACPNCGEEVFA-FVNSDQTKNSPH--RSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~s-Ffgtv~s~~~~n--~vkChvC~t~L~ 262 (296)
..|+.|++.++. ..-. ..+..-| =.+|..|++.|.
T Consensus 16 ~~C~~C~~~I~~~e~v~-a~~~~wH~~CF~C~~C~~~L~ 53 (82)
T 2co8_A 16 DLCALCGEHLYVLERLC-VNGHFFHRSCFRCHTCEATLW 53 (82)
T ss_dssp CBCSSSCCBCCTTTBCC-BTTBCCBTTTCBCSSSCCBCC
T ss_pred CCCcccCCCcccceEEE-ECCCeeCCCcCEEcCCCCCcC
Confidence 469999999862 2212 1223333 378999998874
No 95
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=32.78 E-value=18 Score=31.94 Aligned_cols=30 Identities=17% Similarity=0.491 Sum_probs=21.2
Q ss_pred eeecCCCCCccccceeeccCCCCCCCCccccCCCC
Q 045112 224 ALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCG 258 (296)
Q Consensus 224 iLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~ 258 (296)
+---+|..||.+-.+-... ..+..+|+-|.
T Consensus 132 L~l~~C~~Cgg~fv~~~~~-----~~~~f~Cp~C~ 161 (192)
T 2avu_E 132 LQLSSCNCCGGNFITHAHQ-----PVGSFACSLCQ 161 (192)
T ss_dssp EEEEECTTTCCEEEEESSC-----CSSCCCCTTC-
T ss_pred eeeCcCCCCCCCeeCccCC-----CCCCCcCCCCC
Confidence 3345899999975544432 56889999998
No 96
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=31.77 E-value=14 Score=30.86 Aligned_cols=29 Identities=17% Similarity=0.505 Sum_probs=23.4
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
-||.|+.+-...... +...-.+|..||..
T Consensus 104 lC~~C~sPdT~l~k~----~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 104 ICHECNRPDTRIIRE----GRISLLKCEACGAK 132 (138)
T ss_dssp HHTCCSSCSSCCEEE----TTTTEEECSTTSCC
T ss_pred ECCCCCCcCcEEEEc----CCeEEEEccCCCCC
Confidence 499999998888762 35678999999974
No 97
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=31.52 E-value=15 Score=27.93 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=9.0
Q ss_pred eecCCCCCccccc
Q 045112 225 LRGACPNCGEEVF 237 (296)
Q Consensus 225 LKGpCPNCGeEv~ 237 (296)
-.--|||||.+.+
T Consensus 22 ~~~~CPnC~s~~t 34 (69)
T 1ryq_A 22 SEDRCPVCGSRDL 34 (69)
T ss_dssp SSSSCTTTCCCCE
T ss_pred cCCcCCCccCCcc
Confidence 3446999996653
No 98
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=31.34 E-value=13 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=8.9
Q ss_pred ecCCCCCccccc
Q 045112 226 RGACPNCGEEVF 237 (296)
Q Consensus 226 KGpCPNCGeEv~ 237 (296)
--.||||||-..
T Consensus 27 l~~c~~cGe~~l 38 (56)
T 3r8s_0 27 LSVDKTSGEKHL 38 (56)
T ss_dssp EEECTTTCCEEE
T ss_pred eeECCCCCCeec
Confidence 357999999543
No 99
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.47 E-value=39 Score=24.21 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=22.7
Q ss_pred ecCCCCCccccceeeccCCC-CCC--CCccccCCCCcceE
Q 045112 226 RGACPNCGEEVFAFVNSDQT-KNS--PHRSDCHVCGSLLE 262 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv~s-~~~--~n~vkChvC~t~L~ 262 (296)
...|+.|++.+..-+ +.. +.. ++=.+|+.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~--v~a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQP--LIFKNDPYHPDHFNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCC--CCCSSSCCCTTTSBCSSSCCBCC
T ss_pred CCCCccCCCEecceE--EEECcceeCCCCCEeCCCCCccC
Confidence 346999999998221 211 122 23378999999886
No 100
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.92 E-value=38 Score=26.24 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=21.3
Q ss_pred CCCCCccccce--eeccCCC-CCCCCccccCCCCcce
Q 045112 228 ACPNCGEEVFA--FVNSDQT-KNSPHRSDCHVCGSLL 261 (296)
Q Consensus 228 pCPNCGeEv~s--Ffgtv~s-~~~~n~vkChvC~t~L 261 (296)
.|+.|++.+.. .+-...+ .=-.+=.+|..|+..|
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBC
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCC
Confidence 49999999873 2211111 1123456889999998
No 101
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=28.14 E-value=24 Score=34.79 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=25.4
Q ss_pred eecCCCC--CccccceeeccCCCCCCCCccccCCCCcceEEecc
Q 045112 225 LRGACPN--CGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTK 266 (296)
Q Consensus 225 LKGpCPN--CGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~ 266 (296)
..=-|++ ||.+....-.....+.-+.-.+|++|+..-.|.-.
T Consensus 134 ~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~ 177 (595)
T 3f9v_A 134 ATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLI 177 (595)
T ss_dssp CCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCCSEEECC
T ss_pred EEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCCCceEEe
Confidence 3346999 99877522111223345556799999986555444
No 102
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=28.03 E-value=18 Score=28.26 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=8.3
Q ss_pred CCCCCccccc
Q 045112 228 ACPNCGEEVF 237 (296)
Q Consensus 228 pCPNCGeEv~ 237 (296)
.|||||.+.+
T Consensus 37 ~CPnCgs~~~ 46 (81)
T 3p8b_A 37 RCPVCGSRDL 46 (81)
T ss_dssp SCTTTCCCCE
T ss_pred CCCCCCCCcc
Confidence 5999998775
No 103
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.95 E-value=30 Score=23.88 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=22.5
Q ss_pred cCCCCCccccce--eeccCCC-CCCCCccccCCCCcceE
Q 045112 227 GACPNCGEEVFA--FVNSDQT-KNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~s--Ffgtv~s-~~~~n~vkChvC~t~L~ 262 (296)
.-|+.|++.+.. .+-...+ .=-++=.+|..|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCC
Confidence 469999999874 2211111 11233478999999984
No 104
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=27.65 E-value=13 Score=30.81 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=0.0
Q ss_pred ecCCCCCccccceeec--cCCCC-CCCCccccCCCCc
Q 045112 226 RGACPNCGEEVFAFVN--SDQTK-NSPHRSDCHVCGS 259 (296)
Q Consensus 226 KGpCPNCGeEv~sFfg--tv~s~-~~~n~vkChvC~t 259 (296)
.-+||+||...-.||- +.++. ..+--++|.+|+-
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~ 128 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGH 128 (133)
T ss_dssp -------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCC
Confidence 3589999988777774 22222 3556678988874
No 105
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.63 E-value=32 Score=23.64 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=22.6
Q ss_pred cCCCCCccccc--eeeccCCCCCC--CCccccCCCCcceE
Q 045112 227 GACPNCGEEVF--AFVNSDQTKNS--PHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~--sFfgtv~s~~~--~n~vkChvC~t~L~ 262 (296)
..|+.|++++. ..+-...+ .. ++=.+|..|++.|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~-~~~H~~CF~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGG-QTWHEHCFLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTT-CCEETTTCBCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECc-cccCcccCeECCCCCcCC
Confidence 46999999998 33322222 22 23368899998874
No 106
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.59 E-value=40 Score=23.76 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=21.6
Q ss_pred CCCCCccccceeeccCCCCCC--CCccccCCCCcceE
Q 045112 228 ACPNCGEEVFAFVNSDQTKNS--PHRSDCHVCGSLLE 262 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~--~n~vkChvC~t~L~ 262 (296)
.|+.|++.+..-+-... +.. ++=.+|..|+..|.
T Consensus 7 ~C~~C~~~I~~~~v~a~-~~~wH~~CF~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAG-EKHYHPSCALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCS-SCCBCTTTSCCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeC-CCCCCCCcCEeCCCCCCCC
Confidence 59999999985221111 122 23368899998875
No 107
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=27.42 E-value=35 Score=26.62 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhh---cCCCccchh
Q 045112 73 ETLEALYRQARDAYY---SGKPLIVDD 96 (296)
Q Consensus 73 ~elE~~flqA~~AY~---~GkPimsDe 96 (296)
.+||+.|+||+..|- .-|.++||+
T Consensus 11 ~~lE~aF~eaL~~yp~~g~~k~~ls~~ 37 (82)
T 2hzd_A 11 PDIEQSFQEALSIYPPCGRRKIILSDE 37 (82)
T ss_dssp HHHHHHHHHHHHHSCSSSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccceeeccc
Confidence 689999999999986 344455653
No 108
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.12 E-value=30 Score=24.81 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=21.8
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCC--CCcceEEe
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHV--CGSLLEFR 264 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChv--C~t~L~fd 264 (296)
-+||+|+..+-- +..=|...|.+ |+...=|.
T Consensus 7 k~CP~C~~~Iek-------~~GCnhmtC~~~~C~~~FCw~ 39 (60)
T 1wd2_A 7 KECPKCHVTIEK-------DGGCNHMVCRNQNCKAEFCWV 39 (60)
T ss_dssp CCCTTTCCCCSS-------CCSCCSSSCCSSGGGSCCSSS
T ss_pred eECcCCCCeeEe-------CCCCCcEEECCCCcCCEEeeC
Confidence 489999987643 34567788887 87765543
No 109
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=26.93 E-value=14 Score=26.97 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=6.5
Q ss_pred CCCCCccccc
Q 045112 228 ACPNCGEEVF 237 (296)
Q Consensus 228 pCPNCGeEv~ 237 (296)
-||||+....
T Consensus 15 ~CpnC~~~tt 24 (59)
T 3lpe_B 15 ICPICHSPTS 24 (59)
T ss_dssp BCTTTCCBEE
T ss_pred CCCCCCCCcc
Confidence 3888886543
No 110
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=26.36 E-value=42 Score=34.55 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCcc----chhhhHHHHHHHhHhCCeeee-eccceee
Q 045112 77 ALYRQARDAYYSGKPLI----VDDMFDRVELKLRWYGSKSVI-KYPRCSI 121 (296)
Q Consensus 77 ~~flqA~~AY~~GkPim----sDeeFD~LK~kLk~~GS~Vv~-k~PrCSl 121 (296)
+.|++-..+-..=+.|. |+||+|+|..+|...|-.+-+ |+|.|.+
T Consensus 30 ~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l 79 (624)
T 3moe_A 30 RKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWL 79 (624)
T ss_dssp HHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEE
Confidence 45666555544444443 899999999999999988777 6899988
No 111
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.36 E-value=29 Score=23.81 Aligned_cols=22 Identities=45% Similarity=1.088 Sum_probs=17.3
Q ss_pred CCC--CCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 228 ACP--NCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 228 pCP--NCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
.|| .|+.-||+. +..|..|++.
T Consensus 16 ~C~~~~C~~~Nfa~-----------R~~C~~C~~p 39 (45)
T 1n0z_A 16 ICPDKKCGNVNFAR-----------RTSCDRCGRE 39 (45)
T ss_dssp BCSSTTTCCBCCSS-----------CSBCSSSCCB
T ss_pred CCCCCCCCCEEccc-----------cccccccCCc
Confidence 588 799988863 6678888875
No 112
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=26.23 E-value=28 Score=29.00 Aligned_cols=36 Identities=33% Similarity=0.755 Sum_probs=24.9
Q ss_pred CCCCCccccc-------------eeeccCCCC----------CCCCccccCCCCcce--EE
Q 045112 228 ACPNCGEEVF-------------AFVNSDQTK----------NSPHRSDCHVCGSLL--EF 263 (296)
Q Consensus 228 pCPNCGeEv~-------------sFfgtv~s~----------~~~n~vkChvC~t~L--~f 263 (296)
-|-.||++.| ||+..+..+ ..+-++.|.+|+.-| +|
T Consensus 22 ~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 22 VCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSSSTTCEEEECTTTTCCCEEEC
T ss_pred EecCCCCcccccCCcccCCCCCceeecccccceEEEEeccCCceEEEEEEecCCCccCCcc
Confidence 4889999988 455544322 235578899999877 56
No 113
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.13 E-value=18 Score=25.46 Aligned_cols=34 Identities=18% Similarity=0.472 Sum_probs=22.0
Q ss_pred cCCCCCccccce-----eeccCCCCCC--CCccccCCCCcceE
Q 045112 227 GACPNCGEEVFA-----FVNSDQTKNS--PHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~s-----Ffgtv~s~~~--~n~vkChvC~t~L~ 262 (296)
..|+.|++++.. ++.. .+.. ++=.+|+.|++.|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECFNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGCBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccCChhhCCCcCC
Confidence 469999999984 2211 1122 23368999999985
No 114
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.79 E-value=27 Score=29.79 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=18.5
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
-+||.|+.|.. |- +....-|+-|+-+-
T Consensus 28 P~CP~C~seyt-Ye-------Dg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYT-YE-------DGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCC-EE-------CSSSEEETTTTEEE
T ss_pred CCCCCCCCcce-Ee-------cCCeEECCcccccc
Confidence 68999998853 32 34457788887543
No 115
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.11 E-value=43 Score=27.20 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=22.5
Q ss_pred ceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 221 DLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 221 D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
-+++..--|-+||.+ | . ..-.-..+|+.|++.
T Consensus 62 ~L~v~p~~C~~CG~~---F---~--~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFV---F---K--AEINIPSRCPKCKSE 93 (105)
T ss_dssp EEEECCCBBTTTCCB---C---C--CCSSCCSSCSSSCCC
T ss_pred EEEEECcChhhCcCe---e---c--ccCCCCCCCcCCCCC
Confidence 356777889999987 3 1 123344899999985
No 116
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=24.89 E-value=48 Score=23.32 Aligned_cols=31 Identities=26% Similarity=0.651 Sum_probs=18.9
Q ss_pred cCCCCCccccceeec-------cCCCCC----CCCccccCCCCcc
Q 045112 227 GACPNCGEEVFAFVN-------SDQTKN----SPHRSDCHVCGSL 260 (296)
Q Consensus 227 GpCPNCGeEv~sFfg-------tv~s~~----~~n~vkChvC~t~ 260 (296)
--|++|| +.|=+ .+.++. -+..-+|++|+..
T Consensus 4 y~C~~CG---yvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 YVCTVCG---YEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp EECSSSC---CCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EEeCCCC---eEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 4699999 33432 122322 3556689999975
No 117
>2b9d_A E7 protein; zinc finger, homodimer, transcription, viral protein; 1.60A {Human papillomavirus type 1A} SCOP: g.91.1.1
Probab=24.43 E-value=27 Score=24.88 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=19.5
Q ss_pred hhhHHHHhhhhccceeeeecCCCCCccc
Q 045112 208 SASVRVLQGLWRNDLVALRGACPNCGEE 235 (296)
Q Consensus 208 sa~v~~Lt~l~~~D~liLKGpCPNCGeE 235 (296)
..+++.|+.|+.+|+-++ ||.|...
T Consensus 26 ~~~IR~lqqLLl~~L~lv---Cp~Ca~~ 50 (52)
T 2b9d_A 26 HSAIRQLEEMLLRSLNIV---CPLCTLQ 50 (52)
T ss_dssp HHHHHHHHHHHHHTCCCC---CTTTTTC
T ss_pred chhHHHHHHHhhCCceEE---Ccchhcc
Confidence 456788999999888765 9999753
No 118
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=24.41 E-value=63 Score=28.75 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=46.3
Q ss_pred CCCCeeEe--------eCCcccccHHHHHHHHHHHH-------HHhhcCCCcc--chhhhHHHHHHHhHhCCeeeeeccc
Q 045112 56 EEGPSCIF--------VGPLETASKETLEALYRQAR-------DAYYSGKPLI--VDDMFDRVELKLRWYGSKSVIKYPR 118 (296)
Q Consensus 56 ~eGpsc~~--------~~p~e~~t~~elE~~flqA~-------~AY~~GkPim--sDeeFD~LK~kLk~~GS~Vv~k~Pr 118 (296)
++=|-+|. ++|+|.+..+-|||.+.... .....++|.| ++.-|+.|=.++..+|..+++...+
T Consensus 66 p~p~~~I~f~g~~lr~v~PdeRs~~~li~kaL~~~~~~~~~~~~~~~~~~pgi~v~~~sle~ll~e~~~~~~~v~~L~E~ 145 (211)
T 3aia_A 66 PNPPVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMN 145 (211)
T ss_dssp SSCCEEEEEETTTCCSCCSSHHHHHHHHHHHHHHHHHSCTTGGGSCEEEETTEEEECCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCceEEEEcCccccccChhHHHHHHHHHHHHHhcccccccCCcccccCCCCeEEEcCCHHHHHHHHhhcCCcEEEEcCC
Confidence 34457777 99999999999999887754 1133555665 6788999988888888777775444
No 119
>1xak_A SARS ORF7A accessory protein; I-SET IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Sars coronavirus} SCOP: b.1.24.1 PDB: 1yo4_A
Probab=24.32 E-value=22 Score=27.48 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=17.7
Q ss_pred HhhhhccceeeeecCCCCCccccc
Q 045112 214 LQGLWRNDLVALRGACPNCGEEVF 237 (296)
Q Consensus 214 Lt~l~~~D~liLKGpCPNCGeEv~ 237 (296)
+|...++-.++||-|||.=--|-.
T Consensus 7 yqec~rgttvllkepc~~~tyegn 30 (83)
T 1xak_A 7 YQECVRGTTVILKEPCPSGTYEGN 30 (83)
T ss_dssp EEEEETTSEEEEECSSTTCEEEES
T ss_pred hHhhhCCceEEecCCCCCCcccCC
Confidence 456678889999999997544433
No 120
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.13 E-value=32 Score=29.46 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=26.6
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCcceEEe
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFR 264 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fd 264 (296)
--||.|+.+-........ ....-.+|..||..-.-|
T Consensus 104 VlC~~C~sPdT~L~~~~~--~r~~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPK--KQTIGNSCKACGYRGMLD 139 (157)
T ss_dssp TSCTTTCCSCCEEEEETT--TTEEEEECSSSCCEEECC
T ss_pred EECCCCCCCccEEEEecC--CCEEEEEccCCCCCCccc
Confidence 359999999988876311 346778999999865444
No 121
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.73 E-value=79 Score=23.16 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCcc--chhhhHHHHHHHhHhC
Q 045112 80 RQARDAYYSGKPLI--VDDMFDRVELKLRWYG 109 (296)
Q Consensus 80 lqA~~AY~~GkPim--sDeeFD~LK~kLk~~G 109 (296)
+||+.|= =|.||| -.|.-|+||--.+.-|
T Consensus 16 LQaKLaE-~GAPi~g~REElvdRLk~Y~~QtG 46 (58)
T 2do5_A 16 LQAKLAE-IGAPIQGNREELVERLQSYTRQTG 46 (58)
T ss_dssp HHHHHHH-HTCCCCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-hCCcccccHHHHHHHHHHHhhccc
Confidence 5666663 389999 7778899998877766
No 122
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=23.62 E-value=25 Score=35.55 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=1.8
Q ss_pred cCCCCCccccceeeccCCCCCCCCccccCCCCcc
Q 045112 227 GACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSL 260 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~ 260 (296)
--||+||- .+-+.. .+ ..-+|++||+.
T Consensus 541 ~~C~~CGy-----~~~~~~-~~-~~~~CP~Cg~~ 567 (605)
T 1h7b_A 541 DKCFTCGS-----THEMTP-TE-NGFVCSICGET 567 (605)
T ss_dssp EET-------------------------------
T ss_pred ccCcccCC-----cCccCc-cc-cCCcCCCCCCC
Confidence 35999983 221111 01 22679999974
No 123
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.41 E-value=39 Score=26.15 Aligned_cols=32 Identities=25% Similarity=0.589 Sum_probs=21.4
Q ss_pred ecCCCCCccccceeec-------cCCCC----CCCCccccCCCCcc
Q 045112 226 RGACPNCGEEVFAFVN-------SDQTK----NSPHRSDCHVCGSL 260 (296)
Q Consensus 226 KGpCPNCGeEv~sFfg-------tv~s~----~~~n~vkChvC~t~ 260 (296)
+--|++|| +.|-+ .|.++ .-+..-+|++|+..
T Consensus 27 ~y~C~vCG---yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCG---FEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTC---CEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCC---EEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 67899999 45543 13333 24556689999986
No 124
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.28 E-value=25 Score=24.55 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=21.8
Q ss_pred cCCCCCccccce-----eeccCCCC-CCCCccccCCCCcceE
Q 045112 227 GACPNCGEEVFA-----FVNSDQTK-NSPHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~s-----Ffgtv~s~-~~~n~vkChvC~t~L~ 262 (296)
.-|+.|++.+.. .+-...+. =-++=.+|..|+..|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC
Confidence 359999999885 22111110 0123368899999885
No 125
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=23.09 E-value=97 Score=25.34 Aligned_cols=59 Identities=31% Similarity=0.485 Sum_probs=33.7
Q ss_pred hHHHHhhhhccceeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceEEecceeeccccCCceeEEeEEE
Q 045112 210 SVRVLQGLWRNDLVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEFRTKVEQSSSRLGRQWVYGRIY 284 (296)
Q Consensus 210 ~v~~Lt~l~~~D~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~fds~ve~s~s~~~r~w~~GRiY 284 (296)
.-++.++|-.+ -++-.-|++||+- ||.. +.-|+.|++.-. ..+|.| ++.|.-|.|=.+|
T Consensus 33 ~~~F~~~l~~g--rL~~~rC~~CG~~---~~PP--------r~~Cp~C~s~~~--~~ve~s-~G~GtV~S~Tvv~ 91 (145)
T 3irb_A 33 GEQFFNGLKQN--KIIGSKCSKCGRI---FVPA--------RSYCEHCFVKIE--NYVEIN-KDEAYVDSYTIIY 91 (145)
T ss_dssp HHHHHHHHHTT--CCEEEECTTTCCE---EESC--------CSEETTTTEECC--EEEECC-GGGCEEEEEEEEE
T ss_pred HHHHHHHHHcC--eEEEEEeCCCCcE---EcCc--------hhhCcCCCCCce--eeeeec-CCceEEEEEEEEe
Confidence 34667888545 4555669999974 3432 345999997421 112222 2456666555554
No 126
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.93 E-value=56 Score=23.39 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCCcceEE
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLEF 263 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~f 263 (296)
-|--||.|.-. +. -.---.++|+.||-.+.+
T Consensus 5 ~C~rCg~~fs~---~e--l~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 5 RCGKCWKTFTD---EQ--LKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CCCCTTTTCCC---CC--SCCCSSSCCTTTCCSCEE
T ss_pred EeeccCCCccH---HH--HhhCCCcccCccCcEEEE
Confidence 47788877421 11 123457899999987766
No 127
>3a1g_A RNA-directed RNA polymerase catalytic subunit; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_A
Probab=22.66 E-value=1.1e+02 Score=23.97 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=32.6
Q ss_pred eeEeeCCcccccHHH--HHHHHHHHHHHhhcCCCccchhhhHHHHHHHhH
Q 045112 60 SCIFVGPLETASKET--LEALYRQARDAYYSGKPLIVDDMFDRVELKLRW 107 (296)
Q Consensus 60 sc~~~~p~e~~t~~e--lE~~flqA~~AY~~GkPimsDeeFD~LK~kLk~ 107 (296)
|-.+-+|+..-|..| -|.+-..|++-|-+|. |+|+||++.+.-++.
T Consensus 25 sasyr~PiG~~Sm~EAm~~rlr~dAr~d~esGr--i~k~efeeim~i~~~ 72 (80)
T 3a1g_A 25 SSSYRRPVGISSMVEAMVSRARIDARIDFESGR--IKKEEFTEIMKICST 72 (80)
T ss_dssp SSCCSCCCTTSBHHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHH
T ss_pred ccccCCCcchhhHHHHHHHHHHHHHhhhhhhcc--ccHHHHHHHHHHHHH
Confidence 334455655555443 3556677888899996 999999999987754
No 128
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=22.51 E-value=53 Score=26.19 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhcCCCccch-------hhhHHHHHHHhHhCCee
Q 045112 73 ETLEALYRQARDAYYSGKPLIVD-------DMFDRVELKLRWYGSKS 112 (296)
Q Consensus 73 ~elE~~flqA~~AY~~GkPimsD-------eeFD~LK~kLk~~GS~V 112 (296)
++|++..-||- .+++|.|++-| .+|..|+.-|+..|=.+
T Consensus 32 ~~L~~ki~~aP-~FF~~aPVVlDl~~l~~~~dl~~L~~~l~~~gl~~ 77 (120)
T 3ghf_A 32 QALEDKIAQAP-AFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRI 77 (120)
T ss_dssp HHHHHHHHHSH-HHHTTCEEEEEEEECCSSCCHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHhCh-HhhCCCcEEEEccccCChHHHHHHHHHHHHcCCEE
Confidence 33444333333 28999999854 57999999999988755
No 129
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.29 E-value=24 Score=25.67 Aligned_cols=19 Identities=37% Similarity=1.039 Sum_probs=13.2
Q ss_pred CCCCCccccceeeccCCCCCCCCccccCCCC
Q 045112 228 ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCG 258 (296)
Q Consensus 228 pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~ 258 (296)
.|||||+... +| .-|.+||
T Consensus 32 ~c~~cG~~~~-----------pH-~vc~~CG 50 (60)
T 2zjr_Z 32 ECPQCHGKKL-----------SH-HICPNCG 50 (60)
T ss_dssp ECTTTCCEEC-----------TT-BCCTTTC
T ss_pred ECCCCCCEeC-----------Cc-eEcCCCC
Confidence 5999999732 22 3478887
No 130
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.93 E-value=17 Score=32.24 Aligned_cols=39 Identities=18% Similarity=0.508 Sum_probs=21.9
Q ss_pred cceeeeecCCCCCccccc-----eeeccCCCCCCCCccccCCCCcceEEe
Q 045112 220 NDLVALRGACPNCGEEVF-----AFVNSDQTKNSPHRSDCHVCGSLLEFR 264 (296)
Q Consensus 220 ~D~liLKGpCPNCGeEv~-----sFfgtv~s~~~~n~vkChvC~t~L~fd 264 (296)
++.++.---||||+...- .||+ ...+.+|+.|++...++
T Consensus 187 ~~iv~~g~~C~~C~~~~H~~C~~~~~~------~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 187 HSLLIQGQSCETCGIRMHLPCVAKYFQ------SNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CSBCSSCEECSSSCCEECHHHHHHHTT------TCSSCBCTTTCCBCCSC
T ss_pred hhHHhCCcccCccChHHHHHHHHHHHH------hCCCCCCCCCCCCCCCC
Confidence 344443345888864321 1222 23467899999976554
No 131
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=21.69 E-value=85 Score=28.33 Aligned_cols=44 Identities=9% Similarity=-0.062 Sum_probs=33.4
Q ss_pred ccccCCCCCeeEeeCCcccccHHHHH---HHHHHHHHHhhcCCCccch
Q 045112 51 TMCKNEEGPSCIFVGPLETASKETLE---ALYRQARDAYYSGKPLIVD 95 (296)
Q Consensus 51 ~~~~~~eGpsc~~~~p~e~~t~~elE---~~flqA~~AY~~GkPimsD 95 (296)
..+..|+.|.+++.+-....|.+..+ ... +...+|.+|+|.++-
T Consensus 271 ~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~~~ 317 (320)
T 1gdh_A 271 INEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADMSY 317 (320)
T ss_dssp CCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCCTT
T ss_pred CCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCccc
Confidence 34678899999998888777776544 445 566779999999874
No 132
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=21.62 E-value=37 Score=27.90 Aligned_cols=30 Identities=43% Similarity=0.796 Sum_probs=20.3
Q ss_pred hhhhhhhHHHHhhhhccceeeeecCCCCCccccc
Q 045112 204 YPIASASVRVLQGLWRNDLVALRGACPNCGEEVF 237 (296)
Q Consensus 204 yplasa~v~~Lt~l~~~D~liLKGpCPNCGeEv~ 237 (296)
|-.+.-.|+.|.+| -+.+...||.||+|--
T Consensus 34 ydmaadlvrmlrgl----gvfmhakcprcgaegs 63 (131)
T 2x5c_A 34 YDMAADLVRMLRGL----GVFMHAKCPRCGAEGS 63 (131)
T ss_dssp HHHHHHHHHHHHHH----TCCCEEECTTTSCEEE
T ss_pred HhHHHHHHHHHhcc----hheeeccCCCCCCccc
Confidence 44455566667776 2456778999999854
No 133
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=21.46 E-value=36 Score=34.52 Aligned_cols=39 Identities=31% Similarity=0.670 Sum_probs=22.2
Q ss_pred ecCCCCCccccceeeccC-------CCCCCCCccccCCCCcceEEecc
Q 045112 226 RGACPNCGEEVFAFVNSD-------QTKNSPHRSDCHVCGSLLEFRTK 266 (296)
Q Consensus 226 KGpCPNCGeEv~sFfgtv-------~s~~~~n~vkChvC~t~L~fds~ 266 (296)
+|.||.||.+- .+|.. .....-..-.|..||+..+++.+
T Consensus 140 ~gtcP~c~~~~--~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~ 185 (722)
T 1rqg_A 140 IGTCPYCGAED--QKGDQCEVCGRPLTPEILINPRCAICGRPISFRDS 185 (722)
T ss_dssp CSBCSSSCCSC--CCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEE
T ss_pred ccccCccCCcc--CCcchhhhcccccChhhccCCcccCCCcEeEEEEe
Confidence 57899999862 12221 00011122368888888888753
No 134
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.13 E-value=38 Score=26.51 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=20.7
Q ss_pred ecCCCCCccccceeec-------cCCCC----CCCCccccCCCCcc
Q 045112 226 RGACPNCGEEVFAFVN-------SDQTK----NSPHRSDCHVCGSL 260 (296)
Q Consensus 226 KGpCPNCGeEv~sFfg-------tv~s~----~~~n~vkChvC~t~ 260 (296)
+--|++|| +.|-+ .+.++ .-+..-.|++|+..
T Consensus 35 ~y~C~vCG---yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCG---HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTT---EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCC---eEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 67899999 44543 13332 23455689999975
No 135
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.67 E-value=40 Score=23.89 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=21.6
Q ss_pred cCCCCCccccceeeccCCCC-C--CCCccccCCCCcceE
Q 045112 227 GACPNCGEEVFAFVNSDQTK-N--SPHRSDCHVCGSLLE 262 (296)
Q Consensus 227 GpCPNCGeEv~sFfgtv~s~-~--~~n~vkChvC~t~L~ 262 (296)
..|+.|++.++.= -+... . -++=.+|..|+..|.
T Consensus 16 ~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~ 52 (79)
T 1x62_A 16 PMCDKCGTGIVGV--FVKLRDRHRHPECYVCTDCGTNLK 52 (79)
T ss_dssp CCCSSSCCCCCSS--CEECSSCEECTTTTSCSSSCCCHH
T ss_pred CccccCCCCccCc--EEEECcceeCcCcCeeCCCCCCCC
Confidence 5799999998741 11111 2 223367899999885
No 136
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=20.40 E-value=24 Score=27.39 Aligned_cols=36 Identities=28% Similarity=0.695 Sum_probs=22.4
Q ss_pred eeeecCCCCCccccceeeccCCCCCCCCccccCCCCcce
Q 045112 223 VALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLL 261 (296)
Q Consensus 223 liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L 261 (296)
-...=||| ||.. |.+-..+.. ....-+.|+.|.=.+
T Consensus 27 ~~y~y~Cr-CGd~-F~it~edL~-~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 27 ETYFYPCP-CGDN-FAITKEDLE-NGEDVATCPSCSLII 62 (83)
T ss_dssp TEEEECCS-SSSC-EEEEHHHHH-TTCCEEECTTTCCEE
T ss_pred CEEEEeCC-CCCE-EEECHHHHh-CCCEEEECCCCceEE
Confidence 35778999 9987 333332222 122468999998654
No 137
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.35 E-value=43 Score=29.98 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=22.8
Q ss_pred eeeeecCCCCCccccceeeccCCCCCCCCccccCCCCcceE
Q 045112 222 LVALRGACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 222 ~liLKGpCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
.+-.+--||.||......+- ...+.+.-|..||.-++
T Consensus 17 ~ln~~~~CPECGs~~t~IV~----D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 17 NLNIVLTCPECKVYPPKIVE----RFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCCCTTTCCSSCCEEE----EGGGTEEEETTTCBBCC
T ss_pred ccccCeECcCCCCcCCeEEE----eCCCCEEEEcCCCCCcC
Confidence 33344479999984211111 12356889999998764
No 138
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=20.20 E-value=30 Score=32.86 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=13.9
Q ss_pred hhccceeeeec---CCCCCccccceeeccCCCCCCCCccccCCCCcceE
Q 045112 217 LWRNDLVALRG---ACPNCGEEVFAFVNSDQTKNSPHRSDCHVCGSLLE 262 (296)
Q Consensus 217 l~~~D~liLKG---pCPNCGeEv~sFfgtv~s~~~~n~vkChvC~t~L~ 262 (296)
|+.-|-+...+ -||+||++..-+...... ..+....|+.||..++
T Consensus 320 LLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~-~~r~~~~~~~~g~~~~ 367 (437)
T 1dt9_A 320 LIVYENLDIMRYVLHCQGTEEEKILYLTPEQE-KDKSHFTDKETGQEHE 367 (437)
T ss_dssp EEEESCCCCBCCCC---------CCCBCTTCS-SCCCCCC---------
T ss_pred EEEecCcccceEEEEcCCCCceeeeeeccccc-cccccccCcccCcccc
Confidence 33344444344 699999987766655443 3455678999998775
No 139
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.18 E-value=40 Score=21.41 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=9.1
Q ss_pred CccccCCCCcce
Q 045112 250 HRSDCHVCGSLL 261 (296)
Q Consensus 250 n~vkChvC~t~L 261 (296)
.+.+|++|+..+
T Consensus 2 ~k~~CpvCk~q~ 13 (28)
T 2jvx_A 2 SDFCCPKCQYQA 13 (28)
T ss_dssp CCEECTTSSCEE
T ss_pred CcccCccccccC
Confidence 367899998765
Done!