Query 045113
Match_columns 821
No_of_seqs 483 out of 4417
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-87 3.8E-92 785.4 38.0 740 9-780 1-866 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-60 6E-65 587.4 41.7 596 165-796 182-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 9.5E-39 2.1E-43 339.8 14.3 228 172-402 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 5.2E-25 1.1E-29 273.4 17.1 174 488-669 138-317 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.4E-24 3.1E-29 269.5 19.8 319 470-796 70-439 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.9E-27 8.4E-32 249.8 -6.1 314 468-796 54-373 (1255)
7 KOG4194 Membrane glycoprotein 99.9 9.2E-23 2E-27 215.9 4.2 315 469-796 102-427 (873)
8 KOG0444 Cytoskeletal regulator 99.8 7.8E-23 1.7E-27 217.4 -7.3 292 488-796 30-327 (1255)
9 KOG4194 Membrane glycoprotein 99.8 8.3E-21 1.8E-25 201.2 4.6 300 488-796 76-403 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 7.2E-22 1.6E-26 200.8 -7.7 106 686-796 433-539 (565)
11 PLN03210 Resistant to P. syrin 99.8 1.9E-18 4.1E-23 215.2 19.4 287 469-778 589-910 (1153)
12 KOG0618 Serine/threonine phosp 99.7 1.5E-19 3.2E-24 202.0 -5.5 271 488-767 43-436 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 1.8E-19 3.9E-24 183.5 -9.5 260 520-796 47-308 (565)
14 KOG0618 Serine/threonine phosp 99.6 1.1E-17 2.5E-22 187.1 -5.2 219 567-796 243-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.5 1.5E-14 3.3E-19 168.7 9.3 243 518-796 178-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.5 5.6E-14 1.2E-18 163.0 12.1 233 519-796 223-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 160.6 11.8 242 490-780 222-464 (788)
18 KOG0617 Ras suppressor protein 99.5 1.4E-15 3E-20 137.9 -5.3 150 515-669 30-182 (264)
19 KOG0617 Ras suppressor protein 99.4 8.7E-16 1.9E-20 139.3 -7.3 160 488-658 31-194 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 2E-13 4.3E-18 159.5 9.6 224 490-748 199-426 (754)
21 cd00116 LRR_RI Leucine-rich re 99.4 5.6E-14 1.2E-18 152.0 -0.7 263 509-795 14-317 (319)
22 cd00116 LRR_RI Leucine-rich re 99.4 1.4E-13 3E-18 148.8 1.1 133 488-621 21-174 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.3 3.4E-12 7.3E-17 151.6 7.2 149 488-644 521-678 (889)
24 KOG4237 Extracellular matrix p 99.3 5.8E-13 1.3E-17 136.4 -0.2 251 519-772 68-357 (498)
25 KOG4237 Extracellular matrix p 99.1 1.4E-11 3.1E-16 126.3 -0.5 229 490-724 67-358 (498)
26 KOG3207 Beta-tubulin folding c 99.0 2.7E-10 5.8E-15 118.8 3.9 235 538-800 118-369 (505)
27 KOG1909 Ran GTPase-activating 99.0 7.8E-11 1.7E-15 119.6 -0.2 254 509-773 21-310 (382)
28 KOG4341 F-box protein containi 98.9 5.9E-11 1.3E-15 123.0 -2.3 291 491-806 139-447 (483)
29 PRK00411 cdc6 cell division co 98.8 3.6E-07 7.7E-12 101.9 23.2 276 165-441 28-377 (394)
30 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.8E-15 124.6 -4.5 152 511-670 91-244 (722)
31 PF14580 LRR_9: Leucine-rich r 98.8 3.5E-09 7.6E-14 101.4 5.0 126 488-620 17-148 (175)
32 PRK04841 transcriptional regul 98.8 1.7E-07 3.7E-12 116.4 20.1 255 167-450 14-333 (903)
33 PF14580 LRR_9: Leucine-rich r 98.8 5E-09 1.1E-13 100.3 4.6 84 515-601 16-101 (175)
34 KOG1259 Nischarin, modulator o 98.8 1.5E-09 3.2E-14 107.7 0.9 127 563-722 282-409 (490)
35 KOG0532 Leucine-rich repeat (L 98.8 5.1E-10 1.1E-14 120.2 -3.3 191 518-722 75-270 (722)
36 COG4886 Leucine-rich repeat (L 98.7 8.6E-09 1.9E-13 114.9 5.1 128 514-644 112-242 (394)
37 KOG3207 Beta-tubulin folding c 98.7 1.3E-09 2.8E-14 113.9 -1.8 89 633-726 245-340 (505)
38 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4E-13 112.2 6.1 193 521-726 96-291 (394)
39 KOG1259 Nischarin, modulator o 98.7 7.6E-09 1.6E-13 102.7 2.1 134 630-778 280-415 (490)
40 KOG1909 Ran GTPase-activating 98.6 1.2E-08 2.7E-13 103.9 2.8 232 488-724 28-310 (382)
41 KOG2120 SCF ubiquitin ligase, 98.6 2E-09 4.3E-14 106.9 -3.6 63 710-772 311-374 (419)
42 TIGR02928 orc1/cdc6 family rep 98.6 5.1E-06 1.1E-10 91.6 21.6 106 166-273 14-141 (365)
43 KOG4341 F-box protein containi 98.5 8E-09 1.7E-13 107.5 -3.2 260 518-800 138-416 (483)
44 TIGR03015 pepcterm_ATPase puta 98.4 4.2E-06 9.1E-11 88.0 15.7 163 175-340 27-240 (269)
45 PLN03150 hypothetical protein; 98.4 3.7E-07 7.9E-12 106.8 7.7 91 519-610 419-512 (623)
46 cd01128 rho_factor Transcripti 98.4 6.2E-07 1.4E-11 91.5 8.4 82 190-272 16-114 (249)
47 PF05729 NACHT: NACHT domain 98.4 8.4E-07 1.8E-11 85.6 8.8 112 191-302 1-133 (166)
48 cd00009 AAA The AAA+ (ATPases 98.4 2.7E-06 5.9E-11 80.0 12.2 122 170-299 1-130 (151)
49 KOG2120 SCF ubiquitin ligase, 98.4 5.9E-09 1.3E-13 103.5 -6.4 162 630-798 206-376 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.4 2.2E-08 4.7E-13 98.4 -2.5 250 514-773 26-315 (388)
51 PF01637 Arch_ATPase: Archaeal 98.3 1.6E-06 3.4E-11 89.0 8.9 60 169-232 1-60 (234)
52 TIGR00635 ruvB Holliday juncti 98.3 1.1E-06 2.4E-11 94.2 8.0 228 167-425 4-290 (305)
53 PTZ00202 tuzin; Provisional 98.3 3.8E-05 8.2E-10 82.1 19.0 81 160-248 255-336 (550)
54 PF13855 LRR_8: Leucine rich r 98.3 4.4E-07 9.6E-12 71.2 3.2 58 542-599 2-60 (61)
55 KOG2982 Uncharacterized conser 98.3 2.9E-07 6.3E-12 91.8 1.8 87 509-599 62-157 (418)
56 PRK09376 rho transcription ter 98.3 9E-07 2E-11 93.9 5.6 82 190-272 169-267 (416)
57 PRK00080 ruvB Holliday junctio 98.3 3.9E-06 8.5E-11 90.6 10.3 232 166-425 24-311 (328)
58 COG2909 MalT ATP-dependent tra 98.2 1.7E-05 3.7E-10 90.6 15.1 254 176-450 24-339 (894)
59 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 69.0 3.4 60 518-577 1-61 (61)
60 KOG2982 Uncharacterized conser 98.2 4.5E-07 9.7E-12 90.4 1.1 84 710-794 197-288 (418)
61 PF13401 AAA_22: AAA domain; P 98.1 6.6E-06 1.4E-10 76.0 8.0 105 190-298 4-125 (131)
62 PLN03150 hypothetical protein; 98.1 6.2E-06 1.3E-10 96.6 8.5 107 491-602 419-529 (623)
63 PF13173 AAA_14: AAA domain 98.1 7.3E-06 1.6E-10 75.3 7.2 101 190-302 2-102 (128)
64 PF13191 AAA_16: AAA ATPase do 98.0 4.6E-06 1E-10 82.1 4.4 50 168-219 1-51 (185)
65 PRK05564 DNA polymerase III su 98.0 0.00012 2.5E-09 78.6 15.4 125 167-301 4-135 (313)
66 TIGR00767 rho transcription te 98.0 1.8E-05 3.9E-10 84.8 8.4 82 190-272 168-266 (415)
67 KOG0531 Protein phosphatase 1, 98.0 1.2E-06 2.7E-11 97.9 -1.0 242 516-775 70-319 (414)
68 KOG4579 Leucine-rich repeat (L 97.9 9.9E-07 2.1E-11 78.2 -1.6 104 517-621 26-132 (177)
69 KOG3665 ZYG-1-like serine/thre 97.9 8E-06 1.7E-10 95.4 4.4 129 469-602 122-264 (699)
70 KOG3665 ZYG-1-like serine/thre 97.9 6.1E-06 1.3E-10 96.4 3.3 109 488-600 120-232 (699)
71 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.3E-10 57.4 3.9 39 519-557 2-40 (44)
72 KOG0531 Protein phosphatase 1, 97.8 1.6E-06 3.6E-11 96.9 -2.6 105 514-622 91-196 (414)
73 COG3899 Predicted ATPase [Gene 97.8 0.00031 6.8E-09 84.7 16.2 247 168-424 1-357 (849)
74 PTZ00112 origin recognition co 97.8 0.00017 3.7E-09 83.3 11.9 107 166-272 754-880 (1164)
75 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 5E-10 56.4 3.3 39 542-581 2-40 (44)
76 PRK11331 5-methylcytosine-spec 97.7 0.00012 2.5E-09 80.0 9.6 103 167-273 175-284 (459)
77 PRK06893 DNA replication initi 97.7 7.4E-05 1.6E-09 76.1 7.8 90 190-298 39-133 (229)
78 PRK13342 recombination factor 97.7 0.00012 2.5E-09 81.8 9.5 107 167-294 12-124 (413)
79 KOG1859 Leucine-rich repeat pr 97.7 1.2E-06 2.6E-11 97.2 -6.2 43 513-555 79-123 (1096)
80 KOG1859 Leucine-rich repeat pr 97.7 8.4E-07 1.8E-11 98.4 -8.3 119 520-644 166-289 (1096)
81 PRK08116 hypothetical protein; 97.6 0.00027 5.8E-09 73.6 10.4 99 191-298 115-220 (268)
82 PRK15386 type III secretion pr 97.6 0.00011 2.4E-09 79.2 7.6 132 514-669 48-186 (426)
83 TIGR02903 spore_lon_C ATP-depe 97.6 0.00018 3.8E-09 83.8 9.3 132 167-300 154-335 (615)
84 PRK07003 DNA polymerase III su 97.6 0.00052 1.1E-08 79.0 12.2 125 167-301 16-161 (830)
85 KOG4579 Leucine-rich repeat (L 97.6 1.8E-05 4E-10 70.3 0.4 74 509-583 68-141 (177)
86 COG2256 MGS1 ATPase related to 97.6 0.00034 7.4E-09 73.7 9.8 141 166-332 29-184 (436)
87 COG1474 CDC6 Cdc6-related prot 97.6 0.00029 6.3E-09 76.3 9.7 105 167-273 17-135 (366)
88 TIGR03420 DnaA_homol_Hda DnaA 97.6 0.00014 3E-09 74.3 6.6 107 172-299 22-133 (226)
89 TIGR01242 26Sp45 26S proteasom 97.5 0.00036 7.7E-09 76.6 9.6 55 164-220 119-184 (364)
90 PF05496 RuvB_N: Holliday junc 97.5 0.00015 3.2E-09 71.4 5.7 53 166-220 23-78 (233)
91 PRK12402 replication factor C 97.5 0.00046 9.9E-09 75.1 10.2 44 167-212 15-58 (337)
92 PRK13341 recombination factor 97.4 0.00048 1E-08 81.1 9.9 108 167-295 28-142 (725)
93 PRK04195 replication factor C 97.4 0.00062 1.3E-08 77.5 10.5 118 167-298 14-139 (482)
94 PRK14957 DNA polymerase III su 97.4 0.0011 2.3E-08 75.4 11.9 121 167-297 16-157 (546)
95 KOG2543 Origin recognition com 97.4 0.0007 1.5E-08 70.8 9.3 104 165-273 4-127 (438)
96 KOG2004 Mitochondrial ATP-depe 97.4 0.0015 3.3E-08 73.4 12.4 101 165-272 409-516 (906)
97 PRK14961 DNA polymerase III su 97.4 0.0015 3.3E-08 71.4 12.6 123 167-299 16-159 (363)
98 PHA02544 44 clamp loader, smal 97.4 0.0011 2.3E-08 71.5 11.2 120 166-300 20-142 (316)
99 KOG1947 Leucine rich repeat pr 97.4 3.9E-05 8.5E-10 87.9 0.0 263 515-803 158-445 (482)
100 PLN03025 replication factor C 97.4 0.00087 1.9E-08 72.1 10.4 121 167-298 13-138 (319)
101 PRK03992 proteasome-activating 97.4 0.001 2.2E-08 73.5 11.0 48 165-212 129-187 (389)
102 PRK12377 putative replication 97.4 0.00076 1.6E-08 68.9 9.2 99 190-297 101-204 (248)
103 PRK14949 DNA polymerase III su 97.4 0.0011 2.4E-08 77.9 11.6 123 167-299 16-159 (944)
104 PRK08727 hypothetical protein; 97.4 0.00067 1.5E-08 69.3 8.9 90 190-298 41-135 (233)
105 PRK15386 type III secretion pr 97.4 0.00079 1.7E-08 72.8 9.7 64 537-606 48-112 (426)
106 KOG2028 ATPase related to the 97.4 0.0008 1.7E-08 69.5 9.1 117 164-299 141-261 (554)
107 COG3903 Predicted ATPase [Gene 97.3 0.00037 8E-09 74.0 6.8 226 189-424 13-292 (414)
108 COG5238 RNA1 Ran GTPase-activa 97.3 9.9E-05 2.1E-09 73.2 2.1 241 488-748 28-314 (388)
109 PRK00440 rfc replication facto 97.3 0.0021 4.6E-08 69.3 12.2 117 167-298 17-141 (319)
110 PRK08118 topology modulation p 97.3 0.00012 2.7E-09 70.3 2.3 35 191-225 2-37 (167)
111 CHL00181 cbbX CbbX; Provisiona 97.3 0.0023 4.9E-08 67.4 11.9 126 168-302 24-174 (287)
112 PRK14960 DNA polymerase III su 97.3 0.0027 5.8E-08 72.6 13.0 124 166-299 14-158 (702)
113 PRK08181 transposase; Validate 97.3 0.00073 1.6E-08 69.9 7.9 99 191-299 107-209 (269)
114 smart00382 AAA ATPases associa 97.3 0.00092 2E-08 62.0 7.8 81 191-273 3-90 (148)
115 PRK14963 DNA polymerase III su 97.2 0.0022 4.7E-08 72.7 12.0 121 167-297 14-154 (504)
116 PRK05642 DNA replication initi 97.2 0.0011 2.3E-08 67.8 8.5 90 190-298 45-139 (234)
117 PRK07940 DNA polymerase III su 97.2 0.0056 1.2E-07 67.2 14.4 124 167-299 5-157 (394)
118 PRK12323 DNA polymerase III su 97.2 0.003 6.5E-08 71.9 12.3 127 166-302 15-168 (700)
119 PRK14962 DNA polymerase III su 97.2 0.0027 5.8E-08 71.4 11.6 122 167-298 14-156 (472)
120 KOG1644 U2-associated snRNP A' 97.2 0.00055 1.2E-08 65.4 4.9 82 518-600 42-125 (233)
121 PRK14958 DNA polymerase III su 97.1 0.0036 7.9E-08 71.1 12.3 122 167-298 16-158 (509)
122 PRK06645 DNA polymerase III su 97.1 0.0047 1E-07 69.8 12.9 126 167-302 21-172 (507)
123 PRK08691 DNA polymerase III su 97.1 0.0045 9.7E-08 71.4 12.7 124 166-299 15-159 (709)
124 TIGR02881 spore_V_K stage V sp 97.1 0.0025 5.5E-08 66.4 10.1 45 168-212 7-64 (261)
125 PRK06921 hypothetical protein; 97.1 0.002 4.3E-08 67.0 9.1 120 190-331 117-247 (266)
126 PRK08084 DNA replication initi 97.1 0.0015 3.2E-08 66.9 8.0 91 190-299 45-141 (235)
127 PRK10536 hypothetical protein; 97.1 0.0042 9.2E-08 62.9 11.0 126 166-296 54-210 (262)
128 TIGR03689 pup_AAA proteasome A 97.1 0.0029 6.3E-08 71.1 10.9 50 164-213 179-239 (512)
129 PRK14969 DNA polymerase III su 97.1 0.0044 9.6E-08 70.9 12.6 122 167-298 16-158 (527)
130 PRK07952 DNA replication prote 97.1 0.0023 5E-08 65.2 9.2 114 176-298 85-204 (244)
131 PRK14964 DNA polymerase III su 97.1 0.0049 1.1E-07 69.1 12.4 122 166-297 12-154 (491)
132 PF00308 Bac_DnaA: Bacterial d 97.1 0.0028 6E-08 64.0 9.4 121 168-298 10-139 (219)
133 KOG1947 Leucine rich repeat pr 97.1 0.00012 2.5E-09 84.0 -0.6 81 684-775 358-441 (482)
134 PF00004 AAA: ATPase family as 97.0 0.0021 4.5E-08 59.0 7.8 21 193-213 1-21 (132)
135 PRK06526 transposase; Provisio 97.0 0.0011 2.5E-08 68.2 6.4 99 190-299 98-201 (254)
136 PF04665 Pox_A32: Poxvirus A32 97.0 0.0016 3.5E-08 65.6 7.1 36 191-228 14-49 (241)
137 COG0466 Lon ATP-dependent Lon 97.0 0.0042 9.1E-08 70.3 10.9 103 165-272 321-428 (782)
138 PRK07994 DNA polymerase III su 97.0 0.0047 1E-07 71.5 11.4 124 166-299 15-159 (647)
139 PRK14951 DNA polymerase III su 97.0 0.0051 1.1E-07 71.0 11.5 122 167-298 16-163 (618)
140 PF05673 DUF815: Protein of un 97.0 0.005 1.1E-07 61.6 10.0 118 163-302 23-154 (249)
141 PRK05896 DNA polymerase III su 97.0 0.0053 1.2E-07 70.0 11.5 121 166-297 15-157 (605)
142 TIGR02880 cbbX_cfxQ probable R 97.0 0.0047 1E-07 65.0 10.4 123 168-299 23-170 (284)
143 PRK14956 DNA polymerase III su 97.0 0.0057 1.2E-07 67.8 11.4 46 166-212 17-62 (484)
144 PRK09183 transposase/IS protei 97.0 0.0022 4.7E-08 66.5 7.8 99 190-298 102-205 (259)
145 PF05621 TniB: Bacterial TniB 96.9 0.022 4.7E-07 59.0 14.6 106 166-272 33-156 (302)
146 PRK14955 DNA polymerase III su 96.9 0.0064 1.4E-07 67.4 11.7 120 166-296 15-164 (397)
147 PRK14088 dnaA chromosomal repl 96.9 0.0045 9.7E-08 69.4 10.2 99 190-297 130-235 (440)
148 COG1484 DnaC DNA replication p 96.9 0.0031 6.7E-08 65.0 8.0 75 189-272 104-178 (254)
149 TIGR02397 dnaX_nterm DNA polym 96.9 0.012 2.6E-07 64.5 13.1 123 167-300 14-158 (355)
150 PRK07471 DNA polymerase III su 96.8 0.002 4.3E-08 70.0 6.5 47 165-212 17-63 (365)
151 PRK14087 dnaA chromosomal repl 96.8 0.0046 9.9E-08 69.4 9.4 101 190-299 141-249 (450)
152 PRK06835 DNA replication prote 96.8 0.006 1.3E-07 65.2 9.8 98 191-297 184-287 (329)
153 PRK08903 DnaA regulatory inact 96.8 0.0035 7.5E-08 63.9 7.8 44 170-213 22-65 (227)
154 PRK09087 hypothetical protein; 96.8 0.007 1.5E-07 61.3 9.8 24 190-213 44-67 (226)
155 PTZ00454 26S protease regulato 96.8 0.011 2.4E-07 65.0 12.0 49 164-212 142-201 (398)
156 TIGR02639 ClpA ATP-dependent C 96.8 0.006 1.3E-07 73.2 10.7 44 167-212 182-225 (731)
157 TIGR00678 holB DNA polymerase 96.8 0.017 3.6E-07 56.9 12.2 111 178-299 3-136 (188)
158 TIGR00362 DnaA chromosomal rep 96.8 0.0057 1.2E-07 68.3 9.6 121 168-298 112-241 (405)
159 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0039 8.5E-08 64.1 7.6 91 190-282 69-185 (274)
160 PRK08939 primosomal protein Dn 96.7 0.0047 1E-07 65.5 8.4 118 171-298 135-260 (306)
161 PRK14952 DNA polymerase III su 96.7 0.015 3.2E-07 67.0 13.0 125 167-302 13-162 (584)
162 KOG1644 U2-associated snRNP A' 96.7 0.0013 2.7E-08 63.0 3.6 119 521-644 22-150 (233)
163 PRK06620 hypothetical protein; 96.7 0.0073 1.6E-07 60.7 9.3 23 191-213 45-67 (214)
164 COG0542 clpA ATP-binding subun 96.7 0.038 8.2E-07 64.6 16.0 110 166-286 490-620 (786)
165 PRK00149 dnaA chromosomal repl 96.7 0.0082 1.8E-07 67.9 10.6 121 169-299 125-254 (450)
166 PRK09112 DNA polymerase III su 96.7 0.022 4.7E-07 61.7 13.2 48 164-212 20-67 (351)
167 PRK10865 protein disaggregatio 96.7 0.0049 1.1E-07 74.8 9.1 44 167-212 178-221 (857)
168 TIGR03345 VI_ClpV1 type VI sec 96.7 0.004 8.7E-08 75.3 8.2 126 166-297 565-717 (852)
169 PRK14970 DNA polymerase III su 96.7 0.011 2.5E-07 65.0 11.1 121 167-297 17-146 (367)
170 PF08423 Rad51: Rad51; InterP 96.7 0.0068 1.5E-07 62.7 8.7 70 178-248 26-99 (256)
171 TIGR02639 ClpA ATP-dependent C 96.7 0.0066 1.4E-07 72.9 9.9 114 166-285 453-579 (731)
172 PRK07764 DNA polymerase III su 96.6 0.015 3.3E-07 69.6 12.5 121 167-298 15-159 (824)
173 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0098 2.1E-07 72.5 11.2 113 167-285 565-693 (852)
174 TIGR00763 lon ATP-dependent pr 96.6 0.0085 1.8E-07 72.3 10.5 53 166-220 319-375 (775)
175 PRK09111 DNA polymerase III su 96.6 0.014 3.1E-07 67.4 11.9 121 166-296 23-169 (598)
176 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.013 2.7E-07 60.1 10.4 58 181-238 10-71 (235)
177 CHL00095 clpC Clp protease ATP 96.6 0.0073 1.6E-07 73.4 9.9 126 167-298 509-661 (821)
178 KOG2739 Leucine-rich acidic nu 96.6 0.00061 1.3E-08 67.9 0.4 86 514-601 39-129 (260)
179 PRK09361 radB DNA repair and r 96.6 0.0099 2.1E-07 60.5 9.1 56 179-237 12-67 (225)
180 cd01120 RecA-like_NTPases RecA 96.5 0.013 2.8E-07 55.9 9.4 40 192-233 1-40 (165)
181 CHL00095 clpC Clp protease ATP 96.5 0.0061 1.3E-07 74.1 8.6 44 167-212 179-222 (821)
182 PF01695 IstB_IS21: IstB-like 96.5 0.0017 3.8E-08 63.0 3.2 73 190-272 47-119 (178)
183 PRK14954 DNA polymerase III su 96.5 0.018 3.9E-07 66.8 11.8 120 167-297 16-165 (620)
184 PRK12422 chromosomal replicati 96.5 0.0071 1.5E-07 67.7 8.1 99 190-298 141-244 (445)
185 PRK14950 DNA polymerase III su 96.5 0.025 5.3E-07 66.0 12.9 121 167-298 16-159 (585)
186 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0024 5.2E-08 68.0 4.1 47 167-213 51-101 (361)
187 TIGR02237 recomb_radB DNA repa 96.5 0.009 1.9E-07 60.0 8.1 55 182-239 4-58 (209)
188 PRK14959 DNA polymerase III su 96.5 0.021 4.6E-07 65.6 11.9 122 167-298 16-158 (624)
189 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0069 1.5E-07 73.8 8.5 44 167-212 173-216 (852)
190 PRK10865 protein disaggregatio 96.5 0.012 2.6E-07 71.6 10.4 114 166-285 567-696 (857)
191 PF02562 PhoH: PhoH-like prote 96.4 0.0043 9.4E-08 61.1 5.3 120 170-296 3-153 (205)
192 TIGR02238 recomb_DMC1 meiotic 96.4 0.015 3.1E-07 61.9 9.5 69 178-247 84-156 (313)
193 PF13207 AAA_17: AAA domain; P 96.4 0.0022 4.8E-08 58.1 2.9 21 192-212 1-21 (121)
194 PRK06305 DNA polymerase III su 96.4 0.032 7E-07 62.7 12.7 120 167-297 17-159 (451)
195 PTZ00361 26 proteosome regulat 96.4 0.01 2.2E-07 65.9 8.4 52 167-220 183-245 (438)
196 PRK14953 DNA polymerase III su 96.4 0.032 7E-07 63.1 12.7 121 167-297 16-157 (486)
197 PRK12608 transcription termina 96.4 0.01 2.2E-07 63.6 8.1 95 175-272 119-231 (380)
198 COG0470 HolB ATPase involved i 96.4 0.029 6.2E-07 60.6 12.0 122 168-299 2-149 (325)
199 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0066 1.4E-07 73.5 7.4 44 167-212 187-230 (852)
200 TIGR02640 gas_vesic_GvpN gas v 96.4 0.033 7.2E-07 58.0 11.7 55 175-238 10-64 (262)
201 KOG0735 AAA+-type ATPase [Post 96.4 0.015 3.3E-07 65.6 9.4 98 164-271 405-504 (952)
202 KOG2227 Pre-initiation complex 96.3 0.017 3.7E-07 62.4 9.3 107 165-271 148-266 (529)
203 PRK14086 dnaA chromosomal repl 96.3 0.021 4.6E-07 65.3 10.7 100 190-299 314-420 (617)
204 KOG2123 Uncharacterized conser 96.3 0.00048 1E-08 68.7 -2.1 59 490-555 19-77 (388)
205 PRK07261 topology modulation p 96.3 0.0066 1.4E-07 58.7 5.8 67 192-273 2-69 (171)
206 cd03247 ABCC_cytochrome_bd The 96.3 0.018 3.9E-07 56.1 8.9 111 190-302 28-160 (178)
207 KOG2123 Uncharacterized conser 96.3 0.00051 1.1E-08 68.5 -2.1 104 515-621 16-126 (388)
208 PLN03187 meiotic recombination 96.3 0.019 4E-07 61.6 9.3 69 179-248 115-187 (344)
209 cd01131 PilT Pilus retraction 96.2 0.012 2.6E-07 58.4 7.3 106 191-302 2-112 (198)
210 PRK10787 DNA-binding ATP-depen 96.2 0.017 3.7E-07 69.2 9.8 101 166-272 321-427 (784)
211 COG1373 Predicted ATPase (AAA+ 96.2 0.027 6E-07 62.2 10.8 95 192-302 39-134 (398)
212 PF13177 DNA_pol3_delta2: DNA 96.2 0.06 1.3E-06 51.5 11.7 120 171-300 1-143 (162)
213 PF14532 Sigma54_activ_2: Sigm 96.2 0.0052 1.1E-07 57.1 4.3 106 170-299 1-110 (138)
214 PRK11034 clpA ATP-dependent Cl 96.2 0.01 2.3E-07 70.4 7.8 44 167-212 186-229 (758)
215 PRK14965 DNA polymerase III su 96.2 0.041 8.9E-07 63.9 12.4 126 166-302 15-163 (576)
216 PRK04301 radA DNA repair and r 96.2 0.032 7E-07 59.9 10.8 68 178-246 90-161 (317)
217 cd01393 recA_like RecA is a b 96.1 0.039 8.3E-07 56.1 10.7 58 179-238 8-71 (226)
218 TIGR02239 recomb_RAD51 DNA rep 96.1 0.028 6.2E-07 59.9 9.8 70 177-247 83-156 (316)
219 PRK07667 uridine kinase; Provi 96.1 0.01 2.2E-07 58.7 6.0 38 175-212 2-39 (193)
220 PRK06696 uridine kinase; Valid 96.1 0.0069 1.5E-07 61.5 4.9 42 171-212 2-44 (223)
221 PLN03186 DNA repair protein RA 96.1 0.027 5.8E-07 60.5 9.4 70 177-247 110-183 (342)
222 PRK14971 DNA polymerase III su 96.1 0.051 1.1E-06 63.4 12.4 125 167-302 17-165 (614)
223 COG0593 DnaA ATPase involved i 96.1 0.027 5.8E-07 61.3 9.4 103 188-299 111-218 (408)
224 PRK15455 PrkA family serine pr 96.1 0.0058 1.3E-07 68.5 4.4 45 168-212 77-125 (644)
225 KOG0989 Replication factor C, 96.0 0.028 6.1E-07 57.5 8.6 124 166-298 35-168 (346)
226 COG1222 RPT1 ATP-dependent 26S 96.0 0.073 1.6E-06 55.8 11.6 131 162-306 146-309 (406)
227 cd01394 radB RadB. The archaea 96.0 0.031 6.7E-07 56.5 9.1 54 178-233 7-60 (218)
228 PRK11034 clpA ATP-dependent Cl 96.0 0.019 4.1E-07 68.2 8.5 109 167-284 458-582 (758)
229 CHL00176 ftsH cell division pr 96.0 0.023 5E-07 66.2 9.0 48 166-213 182-239 (638)
230 COG4608 AppF ABC-type oligopep 96.0 0.041 8.8E-07 55.9 9.4 110 190-302 39-173 (268)
231 cd03214 ABC_Iron-Siderophores_ 95.9 0.038 8.3E-07 54.0 9.2 109 190-302 25-161 (180)
232 PRK07133 DNA polymerase III su 95.9 0.067 1.4E-06 62.6 12.4 125 167-302 18-162 (725)
233 COG1618 Predicted nucleotide k 95.9 0.0065 1.4E-07 56.1 3.3 23 190-212 5-27 (179)
234 PRK08451 DNA polymerase III su 95.9 0.076 1.7E-06 60.3 12.5 122 167-299 14-157 (535)
235 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.041 8.9E-07 51.5 8.7 94 190-302 26-130 (144)
236 KOG0734 AAA+-type ATPase conta 95.9 0.088 1.9E-06 57.7 12.0 153 166-334 303-490 (752)
237 TIGR00602 rad24 checkpoint pro 95.9 0.024 5.3E-07 65.6 8.5 48 165-212 82-132 (637)
238 TIGR02236 recomb_radA DNA repa 95.9 0.055 1.2E-06 58.0 10.8 68 179-247 84-155 (310)
239 PRK14948 DNA polymerase III su 95.8 0.082 1.8E-06 61.7 12.7 122 167-298 16-160 (620)
240 PRK06647 DNA polymerase III su 95.8 0.11 2.4E-06 59.9 13.6 121 167-298 16-158 (563)
241 TIGR02858 spore_III_AA stage I 95.8 0.09 1.9E-06 54.6 11.6 120 175-302 97-232 (270)
242 PF07693 KAP_NTPase: KAP famil 95.8 0.075 1.6E-06 57.4 11.6 41 172-212 1-42 (325)
243 TIGR01243 CDC48 AAA family ATP 95.8 0.033 7.2E-07 67.1 9.5 48 165-212 176-234 (733)
244 KOG0733 Nuclear AAA ATPase (VC 95.8 0.031 6.8E-07 62.1 8.3 93 164-271 187-292 (802)
245 KOG2739 Leucine-rich acidic nu 95.8 0.0057 1.2E-07 61.1 2.4 84 513-598 60-153 (260)
246 TIGR01241 FtsH_fam ATP-depende 95.7 0.054 1.2E-06 62.1 10.6 50 164-213 52-111 (495)
247 cd03238 ABC_UvrA The excision 95.7 0.046 1E-06 52.9 8.5 104 190-303 21-153 (176)
248 PTZ00035 Rad51 protein; Provis 95.7 0.071 1.5E-06 57.4 10.7 69 178-247 106-178 (337)
249 PRK05541 adenylylsulfate kinas 95.7 0.025 5.3E-07 55.1 6.5 36 189-226 6-41 (176)
250 cd03222 ABC_RNaseL_inhibitor T 95.6 0.051 1.1E-06 52.7 8.5 102 190-302 25-135 (177)
251 PRK05022 anaerobic nitric oxid 95.6 0.1 2.2E-06 59.9 12.5 48 166-213 186-233 (509)
252 PRK05707 DNA polymerase III su 95.6 0.27 5.8E-06 52.8 14.6 142 189-339 21-204 (328)
253 KOG0991 Replication factor C, 95.6 0.027 5.9E-07 55.0 6.3 95 166-273 26-125 (333)
254 PRK11608 pspF phage shock prot 95.6 0.039 8.5E-07 59.4 8.3 46 167-212 6-51 (326)
255 COG1223 Predicted ATPase (AAA+ 95.6 0.11 2.4E-06 51.9 10.4 124 165-302 119-267 (368)
256 PRK15429 formate hydrogenlyase 95.6 0.051 1.1E-06 65.0 10.1 130 167-299 376-521 (686)
257 PF13671 AAA_33: AAA domain; P 95.6 0.045 9.8E-07 51.0 7.7 21 192-212 1-21 (143)
258 PF12061 DUF3542: Protein of u 95.6 0.016 3.5E-07 58.9 4.7 105 12-128 297-401 (402)
259 COG2607 Predicted ATPase (AAA+ 95.5 0.074 1.6E-06 52.6 9.0 116 164-299 57-183 (287)
260 cd00983 recA RecA is a bacter 95.5 0.043 9.4E-07 58.2 7.9 86 179-271 43-143 (325)
261 CHL00195 ycf46 Ycf46; Provisio 95.5 0.49 1.1E-05 53.6 16.7 47 166-212 227-281 (489)
262 cd03228 ABCC_MRP_Like The MRP 95.5 0.086 1.9E-06 50.9 9.5 107 190-302 28-158 (171)
263 PRK05563 DNA polymerase III su 95.4 0.18 3.9E-06 58.3 13.4 121 166-297 15-157 (559)
264 COG2255 RuvB Holliday junction 95.4 0.014 3E-07 59.1 3.7 53 166-220 25-80 (332)
265 cd03230 ABC_DR_subfamily_A Thi 95.4 0.08 1.7E-06 51.3 8.9 108 190-302 26-158 (173)
266 PRK13695 putative NTPase; Prov 95.4 0.017 3.7E-07 56.1 4.2 22 192-213 2-23 (174)
267 cd03216 ABC_Carb_Monos_I This 95.3 0.054 1.2E-06 51.9 7.5 109 190-301 26-144 (163)
268 KOG1514 Origin recognition com 95.3 0.14 3.1E-06 58.2 11.5 130 166-296 395-546 (767)
269 PRK11889 flhF flagellar biosyn 95.3 0.22 4.7E-06 53.9 12.4 24 189-212 240-263 (436)
270 PF13238 AAA_18: AAA domain; P 95.3 0.011 2.5E-07 53.8 2.6 20 193-212 1-20 (129)
271 TIGR01243 CDC48 AAA family ATP 95.3 0.15 3.2E-06 61.5 12.8 48 165-212 451-509 (733)
272 PF13604 AAA_30: AAA domain; P 95.3 0.077 1.7E-06 52.5 8.7 111 174-295 4-127 (196)
273 cd03223 ABCD_peroxisomal_ALDP 95.3 0.11 2.4E-06 50.0 9.4 109 190-302 27-151 (166)
274 PRK09270 nucleoside triphospha 95.3 0.024 5.1E-07 57.8 5.0 26 187-212 30-55 (229)
275 PRK12724 flagellar biosynthesi 95.2 0.13 2.7E-06 56.3 10.5 78 190-269 223-307 (432)
276 cd01135 V_A-ATPase_B V/A-type 95.2 0.069 1.5E-06 55.0 8.0 93 190-282 69-188 (276)
277 cd00561 CobA_CobO_BtuR ATP:cor 95.2 0.16 3.5E-06 47.9 9.9 106 191-299 3-138 (159)
278 TIGR02012 tigrfam_recA protein 95.2 0.07 1.5E-06 56.6 8.3 86 179-271 43-143 (321)
279 PRK06002 fliI flagellum-specif 95.2 0.072 1.6E-06 58.9 8.6 80 190-272 165-265 (450)
280 PRK08972 fliI flagellum-specif 95.1 0.068 1.5E-06 58.7 8.3 87 190-280 162-272 (444)
281 cd03246 ABCC_Protease_Secretio 95.1 0.077 1.7E-06 51.4 7.9 107 190-302 28-159 (173)
282 PF05659 RPW8: Arabidopsis bro 95.1 0.19 4.1E-06 46.8 9.9 105 9-131 7-114 (147)
283 PF00006 ATP-synt_ab: ATP synt 95.1 0.065 1.4E-06 53.6 7.4 87 190-282 15-127 (215)
284 PRK09354 recA recombinase A; P 95.1 0.082 1.8E-06 56.6 8.6 87 178-271 47-148 (349)
285 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.067 1.4E-06 52.3 7.5 21 192-212 1-21 (183)
286 KOG1969 DNA replication checkp 95.1 0.051 1.1E-06 61.9 7.1 74 188-273 324-399 (877)
287 PF00448 SRP54: SRP54-type pro 95.1 0.1 2.2E-06 51.5 8.7 57 190-248 1-58 (196)
288 cd01129 PulE-GspE PulE/GspE Th 95.1 0.055 1.2E-06 56.2 7.1 123 170-302 62-187 (264)
289 PF00485 PRK: Phosphoribulokin 95.0 0.016 3.4E-07 57.4 2.9 21 192-212 1-21 (194)
290 KOG1051 Chaperone HSP104 and r 95.0 0.18 3.8E-06 60.1 11.7 109 167-284 562-685 (898)
291 PTZ00301 uridine kinase; Provi 95.0 0.024 5.1E-07 56.6 4.0 23 190-212 3-25 (210)
292 TIGR01069 mutS2 MutS2 family p 95.0 0.12 2.5E-06 62.0 10.4 144 190-339 322-502 (771)
293 PF13306 LRR_5: Leucine rich r 94.9 0.04 8.6E-07 50.3 5.2 83 512-597 6-90 (129)
294 PRK08233 hypothetical protein; 94.9 0.021 4.5E-07 55.8 3.4 23 190-212 3-25 (182)
295 PRK06547 hypothetical protein; 94.9 0.034 7.4E-07 53.6 4.7 33 179-213 6-38 (172)
296 cd01121 Sms Sms (bacterial rad 94.9 0.079 1.7E-06 57.8 8.0 90 176-270 68-167 (372)
297 PHA00729 NTP-binding motif con 94.9 0.032 7E-07 55.7 4.6 33 178-212 7-39 (226)
298 PRK12597 F0F1 ATP synthase sub 94.9 0.066 1.4E-06 59.6 7.5 82 190-272 143-248 (461)
299 COG1875 NYN ribonuclease and A 94.9 0.11 2.4E-06 54.5 8.5 150 171-334 228-415 (436)
300 PRK05703 flhF flagellar biosyn 94.8 0.24 5.1E-06 55.2 11.8 40 190-229 221-260 (424)
301 TIGR02974 phageshock_pspF psp 94.8 0.082 1.8E-06 56.9 7.9 45 169-213 1-45 (329)
302 COG0396 sufC Cysteine desulfur 94.8 0.2 4.4E-06 49.4 9.7 113 190-302 30-207 (251)
303 TIGR01817 nifA Nif-specific re 94.8 0.083 1.8E-06 61.3 8.5 49 165-213 194-242 (534)
304 cd01132 F1_ATPase_alpha F1 ATP 94.8 0.11 2.4E-06 53.4 8.4 90 190-283 69-184 (274)
305 PRK05480 uridine/cytidine kina 94.8 0.023 5E-07 57.0 3.4 24 189-212 5-28 (209)
306 cd02019 NK Nucleoside/nucleoti 94.8 0.021 4.5E-07 45.8 2.4 22 192-213 1-22 (69)
307 PRK08058 DNA polymerase III su 94.8 0.26 5.6E-06 53.2 11.5 123 168-300 6-151 (329)
308 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.076 1.6E-06 50.5 6.7 110 190-302 25-143 (157)
309 PRK04296 thymidine kinase; Pro 94.7 0.052 1.1E-06 53.5 5.6 104 191-300 3-117 (190)
310 cd03213 ABCG_EPDR ABCG transpo 94.7 0.14 3.1E-06 50.6 8.8 110 190-300 35-172 (194)
311 PLN00020 ribulose bisphosphate 94.7 0.04 8.7E-07 58.6 4.9 26 188-213 146-171 (413)
312 TIGR00235 udk uridine kinase. 94.7 0.025 5.5E-07 56.6 3.4 24 189-212 5-28 (207)
313 PRK13531 regulatory ATPase Rav 94.7 0.033 7.3E-07 61.7 4.5 42 167-212 20-61 (498)
314 TIGR00390 hslU ATP-dependent p 94.7 0.083 1.8E-06 57.5 7.3 77 167-245 12-104 (441)
315 cd03235 ABC_Metallic_Cations A 94.7 0.23 4.9E-06 50.0 10.2 24 190-213 25-48 (213)
316 PRK12727 flagellar biosynthesi 94.6 0.6 1.3E-05 52.6 14.1 23 190-212 350-372 (559)
317 PRK14722 flhF flagellar biosyn 94.6 0.26 5.6E-06 53.5 11.0 80 190-272 137-226 (374)
318 PF00560 LRR_1: Leucine Rich R 94.6 0.019 4.1E-07 34.3 1.3 20 520-539 2-21 (22)
319 PRK08149 ATP synthase SpaL; Va 94.6 0.12 2.5E-06 57.0 8.4 79 190-272 151-252 (428)
320 KOG0924 mRNA splicing factor A 94.6 0.16 3.4E-06 57.2 9.3 118 177-302 362-513 (1042)
321 PRK06217 hypothetical protein; 94.6 0.14 3.1E-06 50.0 8.3 35 191-226 2-38 (183)
322 PRK00771 signal recognition pa 94.6 0.37 8E-06 53.6 12.3 80 189-271 94-185 (437)
323 cd03229 ABC_Class3 This class 94.5 0.093 2E-06 51.1 6.9 23 190-212 26-48 (178)
324 PF00158 Sigma54_activat: Sigm 94.5 0.12 2.5E-06 49.7 7.3 45 169-213 1-45 (168)
325 PRK06762 hypothetical protein; 94.5 0.029 6.3E-07 54.0 3.1 22 191-212 3-24 (166)
326 PRK09280 F0F1 ATP synthase sub 94.5 0.098 2.1E-06 58.0 7.5 90 190-280 144-258 (463)
327 cd03217 ABC_FeS_Assembly ABC-t 94.5 0.17 3.7E-06 50.3 8.7 113 190-303 26-168 (200)
328 PRK14721 flhF flagellar biosyn 94.4 0.32 6.8E-06 53.7 11.3 23 190-212 191-213 (420)
329 COG1102 Cmk Cytidylate kinase 94.4 0.043 9.3E-07 50.8 3.8 44 192-248 2-45 (179)
330 PRK14974 cell division protein 94.4 0.4 8.6E-06 51.4 11.8 24 189-212 139-162 (336)
331 KOG0733 Nuclear AAA ATPase (VC 94.4 0.18 3.8E-06 56.4 9.1 121 167-302 511-660 (802)
332 PRK08927 fliI flagellum-specif 94.4 0.14 3E-06 56.6 8.4 88 189-280 157-268 (442)
333 PRK03839 putative kinase; Prov 94.4 0.028 6E-07 54.9 2.8 22 192-213 2-23 (180)
334 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.08 1.7E-06 58.5 6.6 91 190-281 138-253 (449)
335 TIGR00150 HI0065_YjeE ATPase, 94.4 0.058 1.2E-06 49.3 4.6 40 174-213 6-45 (133)
336 KOG0741 AAA+-type ATPase [Post 94.4 0.2 4.3E-06 55.1 9.2 75 188-279 536-616 (744)
337 TIGR03574 selen_PSTK L-seryl-t 94.4 0.11 2.5E-06 53.6 7.4 20 193-212 2-21 (249)
338 PRK05922 type III secretion sy 94.4 0.18 3.9E-06 55.6 9.2 87 190-280 157-267 (434)
339 cd01136 ATPase_flagellum-secre 94.4 0.18 3.8E-06 53.7 8.9 79 190-272 69-170 (326)
340 cd03215 ABC_Carb_Monos_II This 94.4 0.2 4.4E-06 48.9 8.8 110 190-300 26-165 (182)
341 COG0572 Udk Uridine kinase [Nu 94.3 0.042 9.2E-07 54.2 3.9 30 188-219 6-35 (218)
342 PF07726 AAA_3: ATPase family 94.3 0.025 5.4E-07 50.8 2.1 28 193-222 2-29 (131)
343 cd03232 ABC_PDR_domain2 The pl 94.3 0.16 3.5E-06 50.2 8.1 111 190-300 33-169 (192)
344 PRK07399 DNA polymerase III su 94.3 0.32 6.9E-06 51.9 10.8 131 167-299 4-163 (314)
345 PF00560 LRR_1: Leucine Rich R 94.3 0.019 4.2E-07 34.3 0.9 17 567-583 2-18 (22)
346 COG0468 RecA RecA/RadA recombi 94.3 0.26 5.6E-06 51.1 9.7 89 180-271 50-151 (279)
347 PRK04040 adenylate kinase; Pro 94.3 0.032 7E-07 54.7 3.0 23 190-212 2-24 (188)
348 cd03115 SRP The signal recogni 94.3 0.23 4.9E-06 48.1 9.0 21 192-212 2-22 (173)
349 PRK11388 DNA-binding transcrip 94.3 0.094 2E-06 62.3 7.5 47 167-213 325-371 (638)
350 COG2884 FtsE Predicted ATPase 94.3 0.2 4.4E-06 47.9 8.0 52 251-302 145-200 (223)
351 TIGR01420 pilT_fam pilus retra 94.3 0.1 2.2E-06 56.6 7.1 107 190-302 122-233 (343)
352 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.2 0.46 1E-05 48.2 11.4 24 190-213 48-71 (224)
353 PRK10247 putative ABC transpor 94.2 0.28 6E-06 49.8 9.8 24 190-213 33-56 (225)
354 TIGR01360 aden_kin_iso1 adenyl 94.2 0.037 8.1E-07 54.4 3.3 24 189-212 2-25 (188)
355 COG4088 Predicted nucleotide k 94.2 0.057 1.2E-06 52.0 4.2 22 191-212 2-23 (261)
356 PRK06936 type III secretion sy 94.2 0.17 3.6E-06 55.9 8.4 88 190-281 162-273 (439)
357 PRK00625 shikimate kinase; Pro 94.2 0.033 7.2E-07 53.8 2.7 21 192-212 2-22 (173)
358 TIGR03498 FliI_clade3 flagella 94.1 0.14 3E-06 56.5 7.7 80 190-272 140-241 (418)
359 PRK05201 hslU ATP-dependent pr 94.1 0.1 2.2E-06 56.9 6.4 78 166-245 14-107 (443)
360 COG1121 ZnuC ABC-type Mn/Zn tr 94.1 0.24 5.2E-06 50.4 8.7 111 190-302 30-202 (254)
361 PRK08769 DNA polymerase III su 94.1 0.55 1.2E-05 50.0 11.8 156 174-339 11-209 (319)
362 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.056 1.2E-06 54.3 4.1 107 190-302 29-157 (213)
363 PTZ00185 ATPase alpha subunit; 94.0 0.23 4.9E-06 55.3 8.9 90 189-279 188-308 (574)
364 COG1136 SalX ABC-type antimicr 94.0 0.48 1E-05 47.4 10.5 53 251-303 150-207 (226)
365 PRK14723 flhF flagellar biosyn 94.0 0.33 7.1E-06 57.3 10.8 23 190-212 185-207 (767)
366 cd03263 ABC_subfamily_A The AB 93.9 0.42 9.2E-06 48.2 10.5 24 190-213 28-51 (220)
367 PRK09099 type III secretion sy 93.9 0.19 4.1E-06 55.7 8.3 81 189-272 162-264 (441)
368 PRK10733 hflB ATP-dependent me 93.9 0.22 4.8E-06 58.8 9.4 46 167-212 152-207 (644)
369 TIGR03740 galliderm_ABC gallid 93.9 0.46 9.9E-06 48.1 10.6 24 190-213 26-49 (223)
370 PRK10867 signal recognition pa 93.9 0.68 1.5E-05 51.4 12.5 24 189-212 99-122 (433)
371 PRK07594 type III secretion sy 93.9 0.18 3.9E-06 55.7 8.0 87 190-280 155-265 (433)
372 TIGR01425 SRP54_euk signal rec 93.8 0.6 1.3E-05 51.6 12.0 24 189-212 99-122 (429)
373 PRK05688 fliI flagellum-specif 93.8 0.23 4.9E-06 55.1 8.7 87 190-280 168-278 (451)
374 cd03237 ABC_RNaseL_inhibitor_d 93.8 0.39 8.5E-06 49.4 10.0 113 190-302 25-179 (246)
375 TIGR01040 V-ATPase_V1_B V-type 93.8 0.19 4.1E-06 55.5 7.8 92 190-281 141-268 (466)
376 TIGR03522 GldA_ABC_ATP gliding 93.7 0.66 1.4E-05 49.4 12.0 24 190-213 28-51 (301)
377 KOG0473 Leucine-rich repeat pr 93.7 0.0022 4.7E-08 62.5 -6.2 88 514-602 38-125 (326)
378 cd02023 UMPK Uridine monophosp 93.7 0.039 8.5E-07 54.8 2.4 21 192-212 1-21 (198)
379 KOG0744 AAA+-type ATPase [Post 93.7 0.16 3.4E-06 52.4 6.6 39 190-228 177-217 (423)
380 PTZ00088 adenylate kinase 1; P 93.7 0.076 1.6E-06 53.8 4.4 20 193-212 9-28 (229)
381 TIGR03499 FlhF flagellar biosy 93.7 0.2 4.3E-06 52.7 7.7 23 190-212 194-216 (282)
382 PRK09544 znuC high-affinity zi 93.7 0.4 8.6E-06 49.6 9.9 24 190-213 30-53 (251)
383 PRK13543 cytochrome c biogenes 93.7 0.63 1.4E-05 46.8 11.1 24 190-213 37-60 (214)
384 cd02024 NRK1 Nicotinamide ribo 93.6 0.042 9E-07 53.7 2.3 21 192-212 1-21 (187)
385 KOG1970 Checkpoint RAD17-RFC c 93.6 0.56 1.2E-05 52.1 11.0 50 173-226 88-142 (634)
386 cd01134 V_A-ATPase_A V/A-type 93.6 0.35 7.5E-06 51.4 9.2 90 190-283 157-277 (369)
387 COG0703 AroK Shikimate kinase 93.6 0.047 1E-06 51.8 2.5 28 191-220 3-30 (172)
388 cd02025 PanK Pantothenate kina 93.6 0.04 8.8E-07 55.6 2.3 21 192-212 1-21 (220)
389 TIGR00416 sms DNA repair prote 93.6 0.33 7.2E-06 54.6 9.7 57 172-230 76-132 (454)
390 PF03308 ArgK: ArgK protein; 93.6 0.095 2.1E-06 53.0 4.8 64 175-238 14-77 (266)
391 PRK06793 fliI flagellum-specif 93.6 0.61 1.3E-05 51.6 11.4 106 190-300 156-287 (432)
392 KOG0731 AAA+-type ATPase conta 93.6 0.91 2E-05 53.1 13.2 127 165-306 309-469 (774)
393 KOG1532 GTPase XAB1, interacts 93.6 0.05 1.1E-06 54.5 2.7 26 188-213 17-42 (366)
394 COG1419 FlhF Flagellar GTP-bin 93.6 0.91 2E-05 49.1 12.3 94 190-285 203-309 (407)
395 COG1428 Deoxynucleoside kinase 93.5 0.05 1.1E-06 53.0 2.6 24 190-213 4-27 (216)
396 COG0467 RAD55 RecA-superfamily 93.5 0.085 1.8E-06 54.9 4.6 47 183-231 16-62 (260)
397 cd03282 ABC_MSH4_euk MutS4 hom 93.5 0.073 1.6E-06 53.0 3.9 109 190-305 29-157 (204)
398 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.092 2E-06 55.6 4.7 47 166-212 60-110 (358)
399 cd02027 APSK Adenosine 5'-phos 93.5 0.46 1E-05 44.7 9.1 21 192-212 1-21 (149)
400 PRK06995 flhF flagellar biosyn 93.5 0.53 1.1E-05 52.9 10.8 23 190-212 256-278 (484)
401 TIGR01041 ATP_syn_B_arch ATP s 93.5 0.19 4.2E-06 56.0 7.4 92 190-281 141-259 (458)
402 KOG0728 26S proteasome regulat 93.4 1.4 3E-05 43.9 12.2 123 168-306 147-305 (404)
403 TIGR02868 CydC thiol reductant 93.4 0.52 1.1E-05 54.7 11.4 24 189-212 360-383 (529)
404 PF13306 LRR_5: Leucine rich r 93.4 0.17 3.8E-06 45.9 6.0 101 488-597 10-112 (129)
405 TIGR02322 phosphon_PhnN phosph 93.4 0.059 1.3E-06 52.5 3.0 23 191-213 2-24 (179)
406 TIGR01039 atpD ATP synthase, F 93.4 0.22 4.8E-06 55.1 7.6 91 190-281 143-258 (461)
407 PRK00131 aroK shikimate kinase 93.4 0.062 1.3E-06 52.0 3.1 23 190-212 4-26 (175)
408 COG1703 ArgK Putative periplas 93.4 0.12 2.5E-06 53.1 5.0 64 176-239 37-100 (323)
409 PRK11823 DNA repair protein Ra 93.4 0.35 7.7E-06 54.3 9.5 54 176-231 66-119 (446)
410 COG2019 AdkA Archaeal adenylat 93.4 0.068 1.5E-06 49.8 3.0 23 190-212 4-26 (189)
411 PRK07721 fliI flagellum-specif 93.3 0.28 6E-06 54.6 8.4 81 189-272 157-259 (438)
412 COG1936 Predicted nucleotide k 93.3 0.062 1.3E-06 50.5 2.8 20 192-211 2-21 (180)
413 PLN02318 phosphoribulokinase/u 93.3 0.097 2.1E-06 59.3 4.8 33 180-212 55-87 (656)
414 PRK12723 flagellar biosynthesi 93.3 1.1 2.4E-05 49.1 12.8 117 189-306 173-307 (388)
415 TIGR03496 FliI_clade1 flagella 93.3 0.26 5.7E-06 54.3 8.1 88 190-281 137-248 (411)
416 TIGR03771 anch_rpt_ABC anchore 93.3 0.57 1.2E-05 47.4 10.2 24 190-213 6-29 (223)
417 cd03236 ABC_RNaseL_inhibitor_d 93.3 0.53 1.1E-05 48.7 10.0 24 190-213 26-49 (255)
418 COG0194 Gmk Guanylate kinase [ 93.3 0.41 8.9E-06 45.8 8.2 25 190-214 4-28 (191)
419 PRK13947 shikimate kinase; Pro 93.3 0.058 1.3E-06 52.1 2.7 21 192-212 3-23 (171)
420 COG0003 ArsA Predicted ATPase 93.2 0.1 2.2E-06 55.4 4.6 49 190-240 2-50 (322)
421 cd02028 UMPK_like Uridine mono 93.2 0.055 1.2E-06 52.7 2.5 21 192-212 1-21 (179)
422 PF14516 AAA_35: AAA-like doma 93.2 2.2 4.7E-05 46.1 15.0 103 165-272 9-138 (331)
423 PRK09519 recA DNA recombinatio 93.2 0.28 6E-06 58.1 8.5 88 177-271 46-148 (790)
424 PRK00889 adenylylsulfate kinas 93.1 0.078 1.7E-06 51.5 3.4 23 190-212 4-26 (175)
425 PF07728 AAA_5: AAA domain (dy 93.1 0.15 3.3E-06 47.3 5.2 84 193-283 2-89 (139)
426 COG3640 CooC CO dehydrogenase 93.1 0.13 2.7E-06 51.0 4.6 43 192-236 2-45 (255)
427 TIGR00959 ffh signal recogniti 93.1 0.7 1.5E-05 51.3 11.1 24 189-212 98-121 (428)
428 COG1120 FepC ABC-type cobalami 93.1 0.36 7.7E-06 49.3 8.1 55 251-306 146-206 (258)
429 PRK13949 shikimate kinase; Pro 93.1 0.072 1.6E-06 51.3 3.0 22 191-212 2-23 (169)
430 PRK10751 molybdopterin-guanine 93.1 0.087 1.9E-06 50.5 3.5 24 189-212 5-28 (173)
431 PF01583 APS_kinase: Adenylyls 93.1 0.1 2.2E-06 49.0 3.9 36 190-227 2-37 (156)
432 cd03369 ABCC_NFT1 Domain 2 of 93.1 0.58 1.3E-05 46.7 9.7 23 190-212 34-56 (207)
433 TIGR03263 guanyl_kin guanylate 93.1 0.074 1.6E-06 51.8 3.1 22 191-212 2-23 (180)
434 KOG3864 Uncharacterized conser 93.0 0.0082 1.8E-07 57.6 -3.5 83 690-772 103-187 (221)
435 PTZ00494 tuzin-like protein; P 93.0 2.9 6.3E-05 45.6 14.8 80 161-248 365-445 (664)
436 PHA02774 E1; Provisional 93.0 0.3 6.5E-06 55.2 8.0 51 177-232 422-472 (613)
437 cd02020 CMPK Cytidine monophos 93.0 0.064 1.4E-06 50.2 2.5 21 192-212 1-21 (147)
438 PRK05439 pantothenate kinase; 93.0 0.14 3.1E-06 54.0 5.2 26 187-212 83-108 (311)
439 KOG0927 Predicted transporter 93.0 0.46 9.9E-06 52.7 9.1 51 251-302 229-282 (614)
440 PF00910 RNA_helicase: RNA hel 92.9 0.062 1.3E-06 47.4 2.1 20 193-212 1-20 (107)
441 cd02021 GntK Gluconate kinase 92.9 0.066 1.4E-06 50.4 2.5 22 192-213 1-22 (150)
442 PF08433 KTI12: Chromatin asso 92.9 0.16 3.5E-06 52.8 5.5 22 191-212 2-23 (270)
443 COG0465 HflB ATP-dependent Zn 92.9 0.45 9.7E-06 54.4 9.3 131 164-306 147-307 (596)
444 PF00625 Guanylate_kin: Guanyl 92.9 0.12 2.7E-06 50.5 4.4 37 190-228 2-38 (183)
445 PRK00279 adk adenylate kinase; 92.9 0.16 3.4E-06 51.2 5.3 21 192-212 2-22 (215)
446 PF07724 AAA_2: AAA domain (Cd 92.9 0.11 2.4E-06 50.1 3.9 40 190-231 3-43 (171)
447 PRK12678 transcription termina 92.8 0.19 4.1E-06 56.5 6.1 81 190-272 416-514 (672)
448 COG4618 ArpD ABC-type protease 92.8 4 8.6E-05 45.3 15.8 23 190-212 362-384 (580)
449 PRK10463 hydrogenase nickel in 92.8 0.19 4.2E-06 52.2 5.8 25 188-212 102-126 (290)
450 cd00227 CPT Chloramphenicol (C 92.8 0.078 1.7E-06 51.5 2.8 23 191-213 3-25 (175)
451 PRK10820 DNA-binding transcrip 92.8 0.31 6.7E-06 56.1 8.1 47 166-212 203-249 (520)
452 TIGR02546 III_secr_ATP type II 92.8 0.48 1E-05 52.6 9.3 79 190-272 145-246 (422)
453 PF08477 Miro: Miro-like prote 92.7 0.088 1.9E-06 47.2 2.9 22 193-214 2-23 (119)
454 PRK14738 gmk guanylate kinase; 92.7 0.098 2.1E-06 52.3 3.5 30 183-212 6-35 (206)
455 CHL00059 atpA ATP synthase CF1 92.7 0.51 1.1E-05 52.6 9.2 88 190-281 141-254 (485)
456 cd00071 GMPK Guanosine monopho 92.7 0.091 2E-06 48.6 3.0 22 192-213 1-22 (137)
457 PRK06090 DNA polymerase III su 92.7 3.1 6.8E-05 44.3 14.8 156 174-339 10-202 (319)
458 TIGR00064 ftsY signal recognit 92.7 0.21 4.6E-06 52.1 5.9 39 189-229 71-109 (272)
459 COG0237 CoaE Dephospho-CoA kin 92.7 0.091 2E-06 51.9 3.1 23 190-212 2-24 (201)
460 COG1126 GlnQ ABC-type polar am 92.6 0.58 1.3E-05 45.9 8.3 110 190-302 28-199 (240)
461 KOG0729 26S proteasome regulat 92.6 0.59 1.3E-05 46.8 8.5 125 165-302 175-329 (435)
462 PF03205 MobB: Molybdopterin g 92.6 0.091 2E-06 48.8 2.9 38 191-230 1-39 (140)
463 PRK07196 fliI flagellum-specif 92.6 0.35 7.5E-06 53.5 7.8 25 189-213 154-178 (434)
464 cd03243 ABC_MutS_homologs The 92.6 0.069 1.5E-06 53.2 2.2 21 191-211 30-50 (202)
465 PF06309 Torsin: Torsin; Inte 92.6 0.19 4.1E-06 45.1 4.6 46 167-212 25-75 (127)
466 TIGR03497 FliI_clade2 flagella 92.6 0.37 8E-06 53.2 7.9 87 189-279 136-246 (413)
467 PF12775 AAA_7: P-loop contain 92.5 0.18 3.9E-06 52.7 5.2 89 176-271 22-110 (272)
468 PRK03846 adenylylsulfate kinas 92.5 0.11 2.3E-06 51.7 3.4 24 189-212 23-46 (198)
469 TIGR02788 VirB11 P-type DNA tr 92.5 0.29 6.3E-06 52.2 7.0 106 190-302 144-256 (308)
470 KOG2228 Origin recognition com 92.5 0.7 1.5E-05 48.2 9.2 133 167-302 24-185 (408)
471 PRK13545 tagH teichoic acids e 92.5 1 2.2E-05 51.0 11.3 24 190-213 50-73 (549)
472 KOG0927 Predicted transporter 92.5 3.3 7.2E-05 46.2 14.8 126 170-298 397-565 (614)
473 KOG4252 GTP-binding protein [S 92.5 0.26 5.7E-06 46.0 5.5 107 191-336 21-130 (246)
474 KOG0727 26S proteasome regulat 92.5 0.23 5E-06 49.2 5.5 55 164-220 152-217 (408)
475 KOG0739 AAA+-type ATPase [Post 92.5 0.47 1E-05 48.4 7.7 90 167-271 133-235 (439)
476 TIGR01026 fliI_yscN ATPase Fli 92.4 0.42 9.1E-06 53.3 8.2 87 190-280 163-273 (440)
477 smart00534 MUTSac ATPase domai 92.4 0.062 1.3E-06 52.7 1.6 21 192-212 1-21 (185)
478 TIGR00554 panK_bact pantothena 92.4 0.11 2.3E-06 54.5 3.4 24 189-212 61-84 (290)
479 COG1124 DppF ABC-type dipeptid 92.4 0.16 3.4E-06 50.7 4.3 23 190-212 33-55 (252)
480 TIGR00962 atpA proton transloc 92.4 0.59 1.3E-05 52.8 9.4 88 189-280 160-273 (501)
481 PRK14530 adenylate kinase; Pro 92.4 0.093 2E-06 52.9 2.8 21 192-212 5-25 (215)
482 TIGR00176 mobB molybdopterin-g 92.4 0.11 2.5E-06 49.1 3.2 33 192-226 1-34 (155)
483 PRK13765 ATP-dependent proteas 92.4 0.15 3.3E-06 59.4 4.9 78 165-248 29-106 (637)
484 PRK06820 type III secretion sy 92.4 0.37 8.1E-06 53.4 7.6 79 190-272 163-264 (440)
485 PRK10875 recD exonuclease V su 92.3 0.32 7E-06 56.6 7.5 101 190-295 167-298 (615)
486 cd00464 SK Shikimate kinase (S 92.3 0.094 2E-06 49.6 2.6 20 193-212 2-21 (154)
487 PRK10078 ribose 1,5-bisphospho 92.3 0.11 2.4E-06 51.0 3.1 23 191-213 3-25 (186)
488 PRK15064 ABC transporter ATP-b 92.3 1.1 2.4E-05 52.0 11.9 24 190-213 27-50 (530)
489 COG1066 Sms Predicted ATP-depe 92.3 0.49 1.1E-05 50.8 8.0 93 173-271 76-178 (456)
490 PRK13537 nodulation ABC transp 92.2 1.3 2.8E-05 47.3 11.5 24 190-213 33-56 (306)
491 PRK13948 shikimate kinase; Pro 92.2 0.12 2.6E-06 50.3 3.2 24 189-212 9-32 (182)
492 TIGR03324 alt_F1F0_F1_al alter 92.2 0.57 1.2E-05 52.5 8.9 88 189-280 161-274 (497)
493 COG0563 Adk Adenylate kinase a 92.2 0.099 2.2E-06 50.7 2.6 22 192-213 2-23 (178)
494 PRK09435 membrane ATPase/prote 92.2 0.21 4.4E-06 53.5 5.2 37 176-212 42-78 (332)
495 cd01878 HflX HflX subfamily. 92.2 0.37 8.1E-06 47.9 6.9 25 190-214 41-65 (204)
496 PRK00300 gmk guanylate kinase; 92.2 0.11 2.3E-06 52.0 3.0 24 190-213 5-28 (205)
497 PRK07960 fliI flagellum-specif 92.2 0.34 7.3E-06 53.6 7.0 87 190-280 175-285 (455)
498 COG0488 Uup ATPase components 92.2 0.78 1.7E-05 52.4 10.1 112 189-302 347-499 (530)
499 PRK13975 thymidylate kinase; P 92.1 0.11 2.4E-06 51.4 3.0 22 191-212 3-24 (196)
500 COG2842 Uncharacterized ATPase 92.1 0.74 1.6E-05 47.4 8.8 116 165-287 70-193 (297)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-87 Score=785.42 Aligned_cols=740 Identities=25% Similarity=0.326 Sum_probs=561.7
Q ss_pred HHHHHHHHHHHHHHHhcchhhccccccchhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcccccCCChhHHHHHHHHHHH
Q 045113 9 MDINFRLFSERLRRVLAGEEVALPDAAKQPIQNLHAEIEVVTSWLRDFEYDMSWLLLQKIAEDENDNPDLRTVMDEINCF 88 (821)
Q Consensus 9 ~~~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~ 88 (821)
|++.++..++|+.+++. +++....+.++++..|+++|..|+.+++||+. ++.+...+..|...++++
T Consensus 1 ~~~~~s~~~~~~~~~l~-~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a------------~~~~~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLN-RESECLDGKDNYILELKENLKALQSALEDLDA------------KRDDLERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEehhhHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh------------hcchHHHHHHHHHHHHHH
Confidence 34556667888999888 99999999999999999999999999999999 888889999999999999
Q ss_pred HhhhHHHHHHhHhhhcccC-----CCC----------ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 045113 89 TYESEKVIDTFISSITQQK-----SQS----------GCREDICDALQGLQSKIIDIKQRMQQLEHIDSRIINELKSIKA 153 (821)
Q Consensus 89 ~~~~ed~ld~~~~~~~~~~-----~~~----------~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 153 (821)
+|++||+++.|........ ..+ ++++..+..+..+.+++.++.+..+.+ +........... .
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l-~~~~~~~~~~~~--~ 144 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESL-GSKGVFEVVGES--L 144 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHh-ccccceeccccc--c
Confidence 9999999999988664321 001 444777888888888888888888888 654422222111 1
Q ss_pred ccCCCC-CCCCCCCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcc-cccccceeEEEEcCCC
Q 045113 154 QAGNFP-ASLSFKNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNY-VKHYFDCHAWVQEPYT 231 (821)
Q Consensus 154 ~~~~~~-~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~ 231 (821)
.+...+ ..+...... ||.+..++++.+.|.+++ ..++||+||||+||||||+.++|+.. ++++||.++||+||+.
T Consensus 145 ~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~ 221 (889)
T KOG4658|consen 145 DPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE 221 (889)
T ss_pred cchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc
Confidence 111122 344444445 999999999999999987 49999999999999999999999987 9999999999999999
Q ss_pred CCHHHHHHHHHHHhCCchh----------HHHHHHHhCCCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhh
Q 045113 232 CYADQILDIIIKFLMPSSR----------LIILHEYLMTKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDT 301 (821)
Q Consensus 232 ~~~~~~~~~i~~~l~~~~~----------~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v 301 (821)
|+..+++++|+..++.... +..|.+.|++|||+|||||||+..+|+.++.|+|...+||||++|||++.|
T Consensus 222 f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V 301 (889)
T KOG4658|consen 222 FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEV 301 (889)
T ss_pred ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhh
Confidence 9999999999998887421 788999999999999999999999999999999999999999999999999
Q ss_pred h---------------------cccc---cccCCcCCCCccchHHHHHHHcCCchHHHHHhhc-----------------
Q 045113 302 V---------------------TLFQ---FENGQNIRLDLVPTGGPLRVTYQGWPFHILYHGS----------------- 340 (821)
Q Consensus 302 ~---------------------~lf~---~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~----------------- 340 (821)
| +||+ |.......+.++++|++|+++|+|+|||++++|.
T Consensus 302 ~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~ 381 (889)
T KOG4658|consen 302 CGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNV 381 (889)
T ss_pred hhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcc
Confidence 9 7777 4443335566999999999999999999999991
Q ss_pred cccccc-----chhccccchhHHHHhhhcCChhhHHHHhhcccCCCCceechhhHHHHHHHcCCCCC-----ChHHHHHH
Q 045113 341 ISLEEN-----KREAIAKPIFLQSVAYCMLPFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPD-----NSEATAEK 410 (821)
Q Consensus 341 ~~~~~~-----~~~~i~~~~~~l~~sy~~L~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~-----~~~~~~~~ 410 (821)
..+.+. ..+.++ ++|++||++||+++|.||+|||+|||||+|+++.||.+|+||||+.+ ++++.|+.
T Consensus 382 l~s~~~~~~~~~~~~i~---~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 382 LKSSLAADFSGMEESIL---PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred ccccccCCCCchhhhhH---HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence 111111 356788 99999999999889999999999999999999999999999999977 78999999
Q ss_pred HHHHHHhCCceeeeecCCCCCEEEEEeCcchHHHHHHhcc---ccCcceEEecCCC-----CCCCCCceeEEEEEcCCCc
Q 045113 411 YLEQLINRGFVEVKKRRAGGTINTCSIRSRCWPSLLVVTL---NAEFVFSPILDPK-----GESRKNVKRFFALEQQSDF 482 (821)
Q Consensus 411 ~~~~L~~r~ll~~~~~~~~~~~~~~~mHdlv~dla~~~~~---~~~e~f~~~~~~~-----~~~~~~~~r~lsl~~~~~~ 482 (821)
|+.+|++++|++..... ++..+|+|||+|||+|.++|+ ..+|+++...+.. ....+..+||++++++...
T Consensus 459 ~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~ 536 (889)
T KOG4658|consen 459 YIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE 536 (889)
T ss_pred HHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh
Confidence 99999999999998754 566899999999999999998 1134444443311 2224567999999999888
Q ss_pred ccccC-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCC-CCcccccccCCCCceEEeecCCCCccccHHH
Q 045113 483 AYLDD-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLV-LNQYPSEIENLSLLRYLKLNIPSLKSLPLSF 560 (821)
Q Consensus 483 ~~~~~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i 560 (821)
..... .+++|+||.+.++... .......+|..++.|+||||++|. +.++|+.|++|.|||||+++++.+..+|..+
T Consensus 537 ~~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l 614 (889)
T KOG4658|consen 537 HIAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL 614 (889)
T ss_pred hccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence 77677 8999999999998631 023667889999999999999876 7799999999999999999999999999999
Q ss_pred HhccccceEEecCCc-ccccchhhhccCccCceeecCCcccC--CCCCCCcCCCCCcceecccc-CCcchhhhcCCCCCC
Q 045113 561 FNYLLNLYTLDMPFS-YIDHTADEFWKMKKLRHLNFGSITLP--AHPGNYCGSLENLNFISALY-PCCCTKDLLGRLPNL 636 (821)
Q Consensus 561 ~~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~~~~~--~~~p~~i~~l~~L~~L~~~~-~~~~~~~~l~~l~~L 636 (821)
. +|.+|.+||+..+ .+..+|..+..|++||+|.+...... ...-..+.++.+|+.+.... +...... +..++.|
T Consensus 615 ~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~-l~~~~~L 692 (889)
T KOG4658|consen 615 G-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLED-LLGMTRL 692 (889)
T ss_pred H-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhh-hhhhHHH
Confidence 9 9999999999999 55566666677999999988654421 11112234444444444333 2222233 3334444
Q ss_pred C----eEEEecccccchhHHHHHccCCCCcCEEEeecC-C------C---------CCCCCeeEecc---------cCCC
Q 045113 637 R----NLRIQGDLSYNQSLLSKSLCRLSCLESLKLANE-S------K---------MPRLSKIILAE---------YVFP 687 (821)
Q Consensus 637 ~----~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~-~------~---------~~~L~~l~l~~---------~~~~ 687 (821)
+ .+.+.++ .....+..+..+.+|+.|.+... + . .+++..+.+.. ....
T Consensus 693 ~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~ 769 (889)
T KOG4658|consen 693 RSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA 769 (889)
T ss_pred HHHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc
Confidence 3 2222111 22333445566666676666641 0 0 00111111111 2356
Q ss_pred CCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeecc----cccccc
Q 045113 688 HSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGT----GAMPKL 763 (821)
Q Consensus 688 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~----~~l~~L 763 (821)
++|+.|.+.+|....++++....+..+..+.+..+.+.+.......++|+++..+.+.+. .++.|.... +.+|.+
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLL 848 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCcc-chhheehhcCcccccCccc
Confidence 788888888887777777777777777766666556655544455666777777766663 355555443 556666
Q ss_pred ceeEEeec-CCCCCCccc
Q 045113 764 ECLIINPC-AYLKKMPEQ 780 (821)
Q Consensus 764 ~~L~i~~c-~~l~~lp~~ 780 (821)
.++.+.+| .++..+|++
T Consensus 849 ~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 849 STLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccceeccccceeecCCc
Confidence 66666665 555555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-60 Score=587.36 Aligned_cols=596 Identities=17% Similarity=0.164 Sum_probs=402.4
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEc---CCC----------
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQE---PYT---------- 231 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~---------- 231 (821)
+...+|||+++++++..+|..+.+++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccc
Confidence 345699999999999999977767799999999999999999999999 78889999888742 111
Q ss_pred -CC-HHHHHHHHHHHhCCchh-----HHHHHHHhCCCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh--
Q 045113 232 -CY-ADQILDIIIKFLMPSSR-----LIILHEYLMTKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV-- 302 (821)
Q Consensus 232 -~~-~~~~~~~i~~~l~~~~~-----~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~-- 302 (821)
++ ...++++++.++....+ ...+++.++++|+||||||||+..+|+.+.....+.++||+||||||++.++
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 11 12345555555433321 4678889999999999999999999999998777778899999999999876
Q ss_pred ------------------cccc---cccCCcCCCCccchHHHHHHHcCCchHHHHHhhcc-------ccccc-------c
Q 045113 303 ------------------TLFQ---FENGQNIRLDLVPTGGPLRVTYQGWPFHILYHGSI-------SLEEN-------K 347 (821)
Q Consensus 303 ------------------~lf~---~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~-------~~~~~-------~ 347 (821)
+||+ |+... .+..+.+++++|+++|+|+||||+++|+. .|+-. .
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~ 418 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL 418 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence 6777 54432 45568899999999999999999999932 12211 2
Q ss_pred hhccccchhHHHHhhhcCChh-hHHHHhhcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhCCceeeeec
Q 045113 348 REAIAKPIFLQSVAYCMLPFP-LKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKR 426 (821)
Q Consensus 348 ~~~i~~~~~~l~~sy~~L~~~-~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r~ll~~~~~ 426 (821)
...|. ++|++||++|+++ .|.||++||+||.++.++ .+..|++.+.+. ++..++.|+++||++...
T Consensus 419 ~~~I~---~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~- 485 (1153)
T PLN03210 419 DGKIE---KTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE- 485 (1153)
T ss_pred cHHHH---HHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-
Confidence 35688 9999999999875 999999999999987553 477888877663 233489999999998753
Q ss_pred CCCCCEEEEEeCcchHHHHHHhccccCcc-------eEEecCC-----CCCCCCCceeEEEEEcCCCccc---cc-C-CC
Q 045113 427 RAGGTINTCSIRSRCWPSLLVVTLNAEFV-------FSPILDP-----KGESRKNVKRFFALEQQSDFAY---LD-D-YY 489 (821)
Q Consensus 427 ~~~~~~~~~~mHdlv~dla~~~~~~~~e~-------f~~~~~~-----~~~~~~~~~r~lsl~~~~~~~~---~~-~-~~ 489 (821)
..+.|||++|+||+.+++ ++. +.....+ ........++.+++........ .. . .+
T Consensus 486 ------~~~~MHdLl~~~~r~i~~--~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m 557 (1153)
T PLN03210 486 ------DIVEMHSLLQEMGKEIVR--AQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGM 557 (1153)
T ss_pred ------CeEEhhhHHHHHHHHHHH--hhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcC
Confidence 258999999999999997 442 1111000 0111335678887765443321 11 1 78
Q ss_pred CCceEEEeecCCCCc--cchhhhHHhhccC-CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhcccc
Q 045113 490 PHLHSLLYFTSESDH--LDHIDWQKICEMY-KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLN 566 (821)
Q Consensus 490 ~~LrsL~l~~~~~~~--~~~~~~~~~~~~~-~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 566 (821)
++|+.|.+....... .....++.-|..+ +.||.|++.++++..+|..+ .+.+|++|+++++.+..+|..+. .+++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~-~l~~ 635 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH-SLTG 635 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc-cCCC
Confidence 888888886543110 0000112223333 35777777777777777655 35667777777777666666666 6777
Q ss_pred ceEEecCCc-ccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceecccc-C--CcchhhhcCCCCCCCeEEEe
Q 045113 567 LYTLDMPFS-YIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALY-P--CCCTKDLLGRLPNLRNLRIQ 642 (821)
Q Consensus 567 L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~-~--~~~~~~~l~~l~~L~~L~l~ 642 (821)
|+.|+|++| .+..+|. +..+++|++|++++|.....+|..++++++|+.|++.. + ...+.. + ++++|+.|+++
T Consensus 636 Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Ls 712 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLS 712 (1153)
T ss_pred CCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCC
Confidence 777777666 4555553 56667777777776665566666667777777776665 2 233333 2 56666666666
Q ss_pred cccccchhHHHHHccCCCCcCEEEeecCC--------CCCCCCeeEecc-----------------cCCCCCcceEEEec
Q 045113 643 GDLSYNQSLLSKSLCRLSCLESLKLANES--------KMPRLSKIILAE-----------------YVFPHSLTHLSFSN 697 (821)
Q Consensus 643 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~--------~~~~L~~l~l~~-----------------~~~~~~L~~L~L~~ 697 (821)
+|. ....+|.. ..+|+.|+++.+. ..++|..|.+.+ ...+++|+.|+|++
T Consensus 713 gc~--~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 713 GCS--RLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred CCC--Cccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 662 22233321 2345555555421 122333333322 11235666677766
Q ss_pred ccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCC--------------------Cccceeecc
Q 045113 698 TDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSML--------------------WLEEWTMGT 757 (821)
Q Consensus 698 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--------------------~l~~~~~~~ 757 (821)
|......|.+++++++|+.|+|++|...+.. +.. ..+++|+.|+|++|. .++.+|..+
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si 865 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETL-PTG-INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWI 865 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCee-CCC-CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHH
Confidence 6555556666666777777776654322211 111 134445555554443 344556666
Q ss_pred ccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 758 GAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 758 ~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
..+++|+.|++++|++++.+|..+..+++|+.+++++|+
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 789999999999999999999989999999999999998
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=9.5e-39 Score=339.84 Aligned_cols=228 Identities=29% Similarity=0.458 Sum_probs=184.0
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch--
Q 045113 172 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS-- 249 (821)
Q Consensus 172 r~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-- 249 (821)
||.++++|.+.|....++.++|+|+||||+||||||+.++++.+++++|+.++||.+++..+..+++..|+.++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999996677999999999999999999999997669999999999999999999999999999998772
Q ss_pred -----h----HHHHHHHhCCCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh------------------
Q 045113 250 -----R----LIILHEYLMTKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV------------------ 302 (821)
Q Consensus 250 -----~----~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~------------------ 302 (821)
+ ...+.+.|+++++||||||||+...|+.+...++....|++||||||+..++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 7889999999999999999999999999999888888899999999999887
Q ss_pred ---cccc---cccCCcCCCCccchHHHHHHHcCCchHHHHHhhccc--------ccc-----c--------chhccccch
Q 045113 303 ---TLFQ---FENGQNIRLDLVPTGGPLRVTYQGWPFHILYHGSIS--------LEE-----N--------KREAIAKPI 355 (821)
Q Consensus 303 ---~lf~---~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~~--------~~~-----~--------~~~~i~~~~ 355 (821)
+||+ +.......+.+.+.+++|+++|+|+||||+++|+.. |+. . ....+.
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~--- 237 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF--- 237 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH---
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 5555 222212456778899999999999999999999211 110 0 135577
Q ss_pred hHHHHhhhcCChhhHHHHhhcccCCCCceechhhHHHHHHHcCCCCC
Q 045113 356 FLQSVAYCMLPFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPD 402 (821)
Q Consensus 356 ~~l~~sy~~L~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~ 402 (821)
.++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||++
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999999999999999999999964
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=5.2e-25 Score=273.41 Aligned_cols=174 Identities=21% Similarity=0.260 Sum_probs=87.0
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC-cccccccCCCCceEEeecCCCCc-cccHHHHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN-QYPSEIENLSLLRYLKLNIPSLK-SLPLSFFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~ 565 (821)
.+++|++|.+.++.... ..+..+..+++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..+. +++
T Consensus 138 ~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~ 212 (968)
T PLN00113 138 SIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMK 212 (968)
T ss_pred ccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcC
Confidence 44455555555444321 22334455555555555555544 45555555555555555555544 4455555 555
Q ss_pred cceEEecCCcccc-cchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC---CcchhhhcCCCCCCCeEEE
Q 045113 566 NLYTLDMPFSYID-HTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP---CCCTKDLLGRLPNLRNLRI 641 (821)
Q Consensus 566 ~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~---~~~~~~~l~~l~~L~~L~l 641 (821)
+|++|++++|.+. .+|..++++++|++|++++|.+.+.+|..++++++|++|++..+ +..+.. +.++++|+.|++
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 291 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDL 291 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEEC
Confidence 5555555555433 34555555555555555555555555555555555555555442 233333 445555555555
Q ss_pred ecccccchhHHHHHccCCCCcCEEEeec
Q 045113 642 QGDLSYNQSLLSKSLCRLSCLESLKLAN 669 (821)
Q Consensus 642 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 669 (821)
++| ...+.+|..+..+++|+.|+++.
T Consensus 292 s~n--~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 292 SDN--SLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred cCC--eeccCCChhHcCCCCCcEEECCC
Confidence 544 22333444444444555554443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.4e-24 Score=269.50 Aligned_cols=319 Identities=20% Similarity=0.181 Sum_probs=164.2
Q ss_pred ceeEEEEEcCCCccccc--C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC---------------
Q 045113 470 VKRFFALEQQSDFAYLD--D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN--------------- 531 (821)
Q Consensus 470 ~~r~lsl~~~~~~~~~~--~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--------------- 531 (821)
.++.+.+..+....... . .+++|++|.+.++... ...+..++..+++|++|+|++|.++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 45555555443322111 1 5666666666655432 1233444545555555555555543
Q ss_pred --------cccccccCCCCceEEeecCCCCc-cccHHHHhccccceEEecCCcccc-cchhhhccCccCceeecCCcccC
Q 045113 532 --------QYPSEIENLSLLRYLKLNIPSLK-SLPLSFFNYLLNLYTLDMPFSYID-HTADEFWKMKKLRHLNFGSITLP 601 (821)
Q Consensus 532 --------~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~ 601 (821)
.+|..++++++|++|++++|.+. .+|..++ ++++|++|++++|.+. .+|..++++++|++|++++|.+.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 34444555555555555555443 4454555 5555555555555332 33555555555555555555554
Q ss_pred CCCCCCcCCCCCcceeccccC---CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC-------
Q 045113 602 AHPGNYCGSLENLNFISALYP---CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES------- 671 (821)
Q Consensus 602 ~~~p~~i~~l~~L~~L~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~------- 671 (821)
+.+|..++++++|++|++..+ +..+.. ++++++|+.|++++| ...+.+|..+.++++|+.|++++|.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQN--KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCC--eeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 455555555555555555442 233333 555555555555554 2333444555555555555555421
Q ss_pred ---CCCCCCeeEecc----------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcc
Q 045113 672 ---KMPRLSKIILAE----------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPR 738 (821)
Q Consensus 672 ---~~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 738 (821)
..++|+.|.+.+ +..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.. +.....+++
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~-p~~~~~~~~ 381 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI-PEGLCSSGN 381 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC-ChhHhCcCC
Confidence 223444444433 233444555555555544444444555555555555544443322 112233455
Q ss_pred cceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 739 LKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 739 L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 5555555554333445555667777777777777666677777777777777777765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.9e-27 Score=249.80 Aligned_cols=314 Identities=19% Similarity=0.219 Sum_probs=272.1
Q ss_pred CCceeEEEEEcCCCcccccC--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceE
Q 045113 468 KNVKRFFALEQQSDFAYLDD--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRY 545 (821)
Q Consensus 468 ~~~~r~lsl~~~~~~~~~~~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~ 545 (821)
.++..|+++..+........ .+|.||++.+..+...+ ..+++++ -.++.|.+|||+.|++...|..+.+-+++-.
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn--sGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN--SGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc--CCCCchh-cccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 35688888887766555444 89999999998877653 3355554 4789999999999999999999999999999
Q ss_pred EeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceecccc-C--
Q 045113 546 LKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALY-P-- 622 (821)
Q Consensus 546 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~-~-- 622 (821)
|+||+|+|..+|.+++-+|.-|-+|||++|.++.+|+.+..|.+|+.|+|++|.+...--..+..+++|++|.++. +
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 9999999999999988799999999999999999999999999999999999987543334466788889998887 3
Q ss_pred -CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCC
Q 045113 623 -CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLM 701 (821)
Q Consensus 623 -~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~ 701 (821)
...|.. +..+.||+.++++.+ ....+|..+.++.+|+.|+|++| .++.|... .....+|++|+||.|+++
T Consensus 211 l~N~Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N----~iteL~~~-~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 211 LDNIPTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN----KITELNMT-EGEWENLETLNLSRNQLT 281 (1255)
T ss_pred hhcCCCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC----ceeeeecc-HHHHhhhhhhccccchhc
Confidence 366777 899999999999997 67788999999999999999976 78887764 456789999999999975
Q ss_pred CCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCcccc
Q 045113 702 DDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQL 781 (821)
Q Consensus 702 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l 781 (821)
..|..+.+|+.|+.|.+.+|.++-+.++.+.+.+.+|+.+...+| .++-+|..+..|+.|++|.++.| .|-.+|+++
T Consensus 282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaI 358 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLITLPEAI 358 (1255)
T ss_pred -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-ceeechhhh
Confidence 678999999999999999898887778888999999999999986 79999999999999999999855 466799999
Q ss_pred CCCCCCCEEEEeCCc
Q 045113 782 WCIKSLNNFNCWWPQ 796 (821)
Q Consensus 782 ~~l~~L~~L~l~~c~ 796 (821)
.-++.|+.|++...|
T Consensus 359 HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENP 373 (1255)
T ss_pred hhcCCcceeeccCCc
Confidence 999999999999987
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=9.2e-23 Score=215.92 Aligned_cols=315 Identities=19% Similarity=0.190 Sum_probs=222.0
Q ss_pred CceeEEEEEcCCCcccccC--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceE
Q 045113 469 NVKRFFALEQQSDFAYLDD--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRY 545 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~~~~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~ 545 (821)
.+.+.+.+..+....++.. ...+|..|.+..+.... +-...++-++.||+|||+.|.|+.+| +++..-.++++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 4556666666655555444 56678888888777653 55567788899999999999999777 45666688999
Q ss_pred EeecCCCCccccHHHHhccccceEEecCCcccccchh-hhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-
Q 045113 546 LKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC- 623 (821)
Q Consensus 546 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~- 623 (821)
|+|++|.|+.+-..-+..|.+|-+|.|+.|.++.+|. .|.+|++|+.|+|..|.+.-.---.|..|++|+.|.+..|+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 9999999997765544488999999999999999976 45559999999999998733223447888889988887752
Q ss_pred -cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCC
Q 045113 624 -CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMD 702 (821)
Q Consensus 624 -~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~ 702 (821)
..-..++-.|.++++|++..|. ....-..++..++.|+.|+++.| .++++++.++.++++|..|+|++|.++.
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~N----aI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYN----AIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchh----hhheeecchhhhcccceeEecccccccc
Confidence 3333447778899999999873 33333457778899999999876 7899999999999999999999999887
Q ss_pred CCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce----eeccccccccceeEEeecCCCCCCc
Q 045113 703 DPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW----TMGTGAMPKLECLIINPCAYLKKMP 778 (821)
Q Consensus 703 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~----~~~~~~l~~L~~L~i~~c~~l~~lp 778 (821)
-.+..+..|..|+.|+|+.|.+.-.. ...+.++++|+.|+|.+|. +... ...+..+|+|++|.+.+| +++++|
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHH-hhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCc-eeeecc
Confidence 77777777777788877776653211 2223445556666665542 2211 111334556666666554 255554
Q ss_pred c-ccCCCCCCCEEEEeCCc
Q 045113 779 E-QLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 779 ~-~l~~l~~L~~L~l~~c~ 796 (821)
. .+.++++|++|++.+.+
T Consensus 409 krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhhhccCcccceecCCCCc
Confidence 3 44555555555555443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=7.8e-23 Score=217.36 Aligned_cols=292 Identities=19% Similarity=0.195 Sum_probs=196.6
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCc--cccHHHHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLK--SLPLSFFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~~~L~ 565 (821)
.+..++-|.+...... ..+.-++.+.+|+.|.+++|++.++-..++.|+.||.+.++.|++. .+|..|. .|.
T Consensus 30 qMt~~~WLkLnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~ 103 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLE-----QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLK 103 (1255)
T ss_pred HhhheeEEEechhhhh-----hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccc
Confidence 5566666666554433 3344456666677777777776666666666777777777777665 6777777 777
Q ss_pred cceEEecCCcccccchhhhccCccCceeecCCcccCCCCC-CCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEe
Q 045113 566 NLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPG-NYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQ 642 (821)
Q Consensus 566 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p-~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~ 642 (821)
.|.+|||++|.+.+.|..+..-+++-.|+||+|++ ..+| +.+.+|+.|-.|+++.| ...|+. ...+.+|+.|.++
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLS 181 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcC
Confidence 77777777777777777777777777777777776 3344 33566666667776664 456666 6677777777777
Q ss_pred cccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEecc
Q 045113 643 GDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQN 722 (821)
Q Consensus 643 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 722 (821)
++. ....-...+-.+++|+.|.+++.- ..+..+ +..+..+.||..++||.|.+. ..|..+-++++|+.|+|++|
T Consensus 182 ~NP--L~hfQLrQLPsmtsL~vLhms~Tq--RTl~N~-Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 182 NNP--LNHFQLRQLPSMTSLSVLHMSNTQ--RTLDNI-PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred CCh--hhHHHHhcCccchhhhhhhccccc--chhhcC-CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC
Confidence 662 222222233344555555555310 000000 111445789999999999864 67888999999999999988
Q ss_pred ccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCC-CCCCccccCCCCCCCEEEEeCCc
Q 045113 723 SYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAY-LKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 723 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~-l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.++. +....+...+|++|+++.| .+..+|.....+++|++|.+.+|.. ...+|++++.+.+|+.+...+..
T Consensus 256 ~ite--L~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 256 KITE--LNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred ceee--eeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 8766 3334466788999999997 6888898888999999998887753 34789999988888888766644
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=8.3e-21 Score=201.23 Aligned_cols=300 Identities=16% Similarity=0.118 Sum_probs=224.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcccc-HHHHhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLP-LSFFNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~ 566 (821)
-.+..++|.++++.... +-..+|.++++|+.+++.+|.++.+|...+...||..|+|.+|.|..+. +++. .++.
T Consensus 76 lp~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~-~l~a 150 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELS-ALPA 150 (873)
T ss_pred Cccceeeeecccccccc----CcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHH-hHhh
Confidence 46778899999888763 4457789999999999999999999998888889999999999998665 4455 8899
Q ss_pred ceEEecCCcccccchh-hhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEec
Q 045113 567 LYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~ 643 (821)
|++|||+.|.+.++|. .+..-.++++|+|++|.++.--...|.++.+|-+|.+..| ...|..++.++++|+.|++..
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 9999999999998865 4556678999999999997655566888889999998886 456665588899999999988
Q ss_pred ccccchhHHHHHccCCCCcCEEEeecCC----------CCCCCCeeEecc----------cCCCCCcceEEEecccCCCC
Q 045113 644 DLSYNQSLLSKSLCRLSCLESLKLANES----------KMPRLSKIILAE----------YVFPHSLTHLSFSNTDLMDD 703 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~----------~~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~~ 703 (821)
|.....+ ...|..+++|+.|.+..|- .+.+++.|++.. +.+++.|+.|+|++|.+...
T Consensus 231 N~irive--~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 231 NRIRIVE--GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cceeeeh--hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 7422221 2355667777777766531 344455555443 66778888888888887777
Q ss_pred CcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcccee-eccccccccceeEEeecCCCC---CCcc
Q 045113 704 PMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWT-MGTGAMPKLECLIINPCAYLK---KMPE 779 (821)
Q Consensus 704 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~i~~c~~l~---~lp~ 779 (821)
.++.++.+++|+.|+|++|.++.-. ...+..+..|+.|.|++| .+..+. ..+..+.+|++|++++|..-- .-..
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred ecchhhhcccceeEeccccccccCC-hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 7777788888888888877765432 233556778888888886 455443 345678899999998876422 2223
Q ss_pred ccCCCCCCCEEEEeCCc
Q 045113 780 QLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 780 ~l~~l~~L~~L~l~~c~ 796 (821)
.+..+++|+.|.+.|..
T Consensus 387 ~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred hhccchhhhheeecCce
Confidence 46679999999998876
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=7.2e-22 Score=200.79 Aligned_cols=106 Identities=21% Similarity=0.140 Sum_probs=62.1
Q ss_pred CCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeec-cccccccc
Q 045113 686 FPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMG-TGAMPKLE 764 (821)
Q Consensus 686 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~ 764 (821)
.+++|+.|+|++|.+ .+.|..++.+..|+.|+++.|.|... +........|+.+-.++ ..+..++.. +++|.+|.
T Consensus 433 ~l~kLt~L~L~NN~L-n~LP~e~~~lv~Lq~LnlS~NrFr~l--P~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLL-NDLPEEMGSLVRLQTLNLSFNRFRML--PECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred hhhcceeeecccchh-hhcchhhhhhhhhheecccccccccc--hHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcc
Confidence 344555555555443 23444444455555555554433221 10011112222222222 245555444 67899999
Q ss_pred eeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 765 CLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 765 ~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.|++.++. +..+|.+++++.+|++|+++|.|
T Consensus 509 tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 509 TLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred eeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 99999876 66799999999999999999998
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.9e-18 Score=215.20 Aligned_cols=287 Identities=19% Similarity=0.171 Sum_probs=171.2
Q ss_pred CceeEEEEEcCCCcccccC-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCC-CCcccccccCCCCceEE
Q 045113 469 NVKRFFALEQQSDFAYLDD-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLV-LNQYPSEIENLSLLRYL 546 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~~~~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~l~~Lr~L 546 (821)
.++|.+.+..+.....+.. ...+|+.|.+.++.... +...+..+++|+.|+|+++. +..+|. ++.+++|++|
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 4455555554444333333 45556666555544331 12223455666666666554 344443 5556666666
Q ss_pred eecCCC-CccccHHHHhccccceEEecCCc-ccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--
Q 045113 547 KLNIPS-LKSLPLSFFNYLLNLYTLDMPFS-YIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP-- 622 (821)
Q Consensus 547 ~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~-- 622 (821)
+|++|. +..+|.++. ++++|+.|++++| .++.+|..+ ++++|++|++++|.....+|.. .++|+.|++..+
T Consensus 663 ~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred EecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 666553 446666665 6666666666665 555555544 5566666666655443444332 223344443332
Q ss_pred Ccchhh-----------------------------hcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 623 CCCTKD-----------------------------LLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 623 ~~~~~~-----------------------------~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
...+.. .....++|+.|++++| .....+|..++++++|+.|+++ .|
T Consensus 738 ~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n--~~l~~lP~si~~L~~L~~L~Ls---~C 812 (1153)
T PLN03210 738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI--PSLVELPSSIQNLHKLEHLEIE---NC 812 (1153)
T ss_pred ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC--CCccccChhhhCCCCCCEEECC---CC
Confidence 111111 0011235556666555 3445567777777777777777 45
Q ss_pred CCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce
Q 045113 674 PRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW 753 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 753 (821)
.+++.+... ..+++|+.|+|++|......|.. .++|+.|+|++|.+.. ++.....+++|+.|++++|+.+..+
T Consensus 813 ~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 813 INLETLPTG--INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCcCeeCCC--CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCcc
Confidence 556654322 25788888888888644333322 3578888888777654 3445678999999999999999999
Q ss_pred eeccccccccceeEEeecCCCCCCc
Q 045113 754 TMGTGAMPKLECLIINPCAYLKKMP 778 (821)
Q Consensus 754 ~~~~~~l~~L~~L~i~~c~~l~~lp 778 (821)
+.....+++|+.|++++|+.+..++
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CcccccccCCCeeecCCCccccccc
Confidence 9888899999999999999887543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.5e-19 Score=202.01 Aligned_cols=271 Identities=22% Similarity=0.191 Sum_probs=158.6
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
++-+|.+|.++++... .++..+..++.|+.|+++.|.+...|.+++++.+|+||+|.+|.+..+|.++. .+.+|
T Consensus 43 ~~v~L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~-~lknl 116 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS-ELKNL 116 (1081)
T ss_pred heeeeEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH-hhhcc
Confidence 4555888888887765 34455677788888888888888888888888888888888888888888888 88888
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCc-------------------ccCCCCCCCc--------------------
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSI-------------------TLPAHPGNYC-------------------- 608 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~-------------------~~~~~~p~~i-------------------- 608 (821)
++|+++.|.+..+|..+..+..+..++.++| .+.+.++..+
T Consensus 117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls 196 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLS 196 (1081)
T ss_pred cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhh
Confidence 8888888877666654433333333322222 1110111000
Q ss_pred -----------------------------------------CCCCCcceeccccC--CcchhhhcCCCCCCCeEEEeccc
Q 045113 609 -----------------------------------------GSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDL 645 (821)
Q Consensus 609 -----------------------------------------~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~ 645 (821)
..-.+|+.++++.+ ...+.. ++.|.+|+.|.+..+.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w-i~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW-IGACANLEALNANHNR 275 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH-HHhcccceEecccchh
Confidence 11123333333331 233433 6777788888877663
Q ss_pred c--------------------cchhHHHHHccCCCCcCEEEeecCC---------------------CCCCCCeeEeccc
Q 045113 646 S--------------------YNQSLLSKSLCRLSCLESLKLANES---------------------KMPRLSKIILAEY 684 (821)
Q Consensus 646 ~--------------------~~~~~l~~~l~~~~~L~~L~l~~~~---------------------~~~~L~~l~l~~~ 684 (821)
- .....+|..+...++|++|+|..|- .+..+..+.-.+-
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 0 0122334444556778888887631 1111111111112
Q ss_pred CCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccc
Q 045113 685 VFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLE 764 (821)
Q Consensus 685 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~ 764 (821)
...+.|+.|.+.+|.+++...+.+.+.++|+.|+|++|.+... +......++.|+.|.|++| .++.+|.....+++|+
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF-PASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLH 433 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC-CHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhH
Confidence 3345666777777777777777777777777777776654431 1223455666777777765 4555554444444444
Q ss_pred eeE
Q 045113 765 CLI 767 (821)
Q Consensus 765 ~L~ 767 (821)
+|.
T Consensus 434 tL~ 436 (1081)
T KOG0618|consen 434 TLR 436 (1081)
T ss_pred HHh
Confidence 443
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.8e-19 Score=183.50 Aligned_cols=260 Identities=20% Similarity=0.195 Sum_probs=154.5
Q ss_pred eeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcc
Q 045113 520 LRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSIT 599 (821)
Q Consensus 520 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~ 599 (821)
|..|++++|.+..+-+.+.++..|..|++++|.+..+|++++ .+..++.|+.+++++..+|+.++.+.+|++|++++|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig-~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIG-ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHH-HHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 344455555555444445555555555555555555555555 5555555555555555555555555555555555555
Q ss_pred cCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCC
Q 045113 600 LPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 677 (821)
Q Consensus 600 ~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~ 677 (821)
+ ..+|++++.+..|+.++...| .+.|.. +.++.+|..|.+.++ ...++|+..-.++.|++|+...| -|+
T Consensus 126 ~-~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N----~L~ 196 (565)
T KOG0472|consen 126 L-KELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSN----LLE 196 (565)
T ss_pred e-eecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchh----hhh
Confidence 4 444455555555555554442 234444 555555555555554 33334444444555555554332 122
Q ss_pred eeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeecc
Q 045113 678 KIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGT 757 (821)
Q Consensus 678 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 757 (821)
.+ +..++.+.+|..|+|..|++. ..+.|.+|..|++|++..|.+... .......+++|..|++.++ .++++|.+.
T Consensus 197 tl-P~~lg~l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRdN-klke~Pde~ 271 (565)
T KOG0472|consen 197 TL-PPELGGLESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRDN-KLKEVPDEI 271 (565)
T ss_pred cC-ChhhcchhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeecccc-ccccCchHH
Confidence 22 222455666666777777653 344778888888888876654331 1222446788888888886 688888888
Q ss_pred ccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 758 GAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 758 ~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.-+.+|++|+++++. +..+|..++++ .|+.|.+.|.|
T Consensus 272 clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 272 CLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 888888888888775 56788888888 88888888888
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-17 Score=187.08 Aligned_cols=219 Identities=23% Similarity=0.238 Sum_probs=142.3
Q ss_pred ceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecc
Q 045113 567 LYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
|++++++++.+..+|..++.+.+|..|+.++|++ ..+|..+...++|+.|.+.++ ...++. +..++.|+.|++..+
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhc
Confidence 4444444444445555555555555555555555 455555555555655555553 344455 677888999999887
Q ss_pred cccchhHHHHHccCC-C-CcCEEEeecC----------CCCCCCCeeEecc----------cCCCCCcceEEEecccCCC
Q 045113 645 LSYNQSLLSKSLCRL-S-CLESLKLANE----------SKMPRLSKIILAE----------YVFPHSLTHLSFSNTDLMD 702 (821)
Q Consensus 645 ~~~~~~~l~~~l~~~-~-~L~~L~l~~~----------~~~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~ 702 (821)
. ...+|..+... . .|+.|..+.+ ..++.|+.|++.+ +.++.+|+.|+|++|.+..
T Consensus 321 ~---L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 321 N---LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred c---ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 3 22233221111 0 1222222221 1333455555444 6788999999999999865
Q ss_pred CCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCC--Cccc
Q 045113 703 DPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKK--MPEQ 780 (821)
Q Consensus 703 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~--lp~~ 780 (821)
.+-..+.+++.|++|+|++|.+.. ++.....++.|++|...+| .+..+| ++..+|.|+.++++.| .|+. +|..
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~ 472 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEA 472 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccc-hhhhhhhhhh
Confidence 555568899999999999998876 3345677899999998886 677788 7888999999999955 4543 4443
Q ss_pred cCCCCCCCEEEEeCCc
Q 045113 781 LWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 781 l~~l~~L~~L~l~~c~ 796 (821)
... |+|++|+++|.+
T Consensus 473 ~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 LPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CCC-cccceeeccCCc
Confidence 333 799999999988
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.5e-14 Score=168.73 Aligned_cols=243 Identities=19% Similarity=0.178 Sum_probs=167.1
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCC
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGS 597 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~ 597 (821)
.+..+|+++++.++.+|..+. ++|+.|+|++|.+..+|..+. .+|++|++++|.+..+|..+. ++|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 356788888888888887664 478888888888888887665 478888888888888877553 4688888888
Q ss_pred cccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCC
Q 045113 598 ITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 675 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 675 (821)
|.+. .+|..+. .+|+.|++..| ...+.. +. ++|+.|++++|. ...+|..+. ++|+.|+++.| .
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~---Lt~LP~~lp--~sL~~L~Ls~N----~ 315 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNS---IRTLPAHLP--SGITHLNVQSN----S 315 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccCccccc-cC--CCCcEEECCCCc---cccCcccch--hhHHHHHhcCC----c
Confidence 8874 6666554 47888887764 233333 32 478888888872 223443322 36777777754 3
Q ss_pred CCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceee
Q 045113 676 LSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM 755 (821)
Q Consensus 676 L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 755 (821)
+..+.. ..+++|+.|++++|.++. +|..+ .++|+.|+|++|.+... +. .-.++|+.|+|++| .+..+|.
T Consensus 316 Lt~LP~---~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~L--P~--~lp~~L~~LdLs~N-~Lt~LP~ 384 (754)
T PRK15370 316 LTALPE---TLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVL--PE--TLPPTITTLDVSRN-ALTNLPE 384 (754)
T ss_pred cccCCc---cccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcC--Ch--hhcCCcCEEECCCC-cCCCCCH
Confidence 443321 134688999999998764 44444 36899999998877642 21 22468999999998 5667765
Q ss_pred ccccccccceeEEeecCCCCCCcccc----CCCCCCCEEEEeCCc
Q 045113 756 GTGAMPKLECLIINPCAYLKKMPEQL----WCIKSLNNFNCWWPQ 796 (821)
Q Consensus 756 ~~~~l~~L~~L~i~~c~~l~~lp~~l----~~l~~L~~L~l~~c~ 796 (821)
.+ .++|+.|++++|. +..+|..+ ..++++..|++.+.|
T Consensus 385 ~l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 385 NL--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hH--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 43 2478999999875 55666544 345788899998887
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=5.6e-14 Score=162.98 Aligned_cols=233 Identities=20% Similarity=0.117 Sum_probs=132.5
Q ss_pred ceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCc
Q 045113 519 LLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSI 598 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~ 598 (821)
+|+.|++.+|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. .++|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcCC
Confidence 455555555555555532 34555555555555555522 23555555555555555442 234555666666
Q ss_pred ccCCCCCCCcCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCC
Q 045113 599 TLPAHPGNYCGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 677 (821)
Q Consensus 599 ~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~ 677 (821)
.+ ..+|.. +++|+.|++.+|. ..++. + ..+|+.|++++| ....+|. ...+|+.|+++.| +|+
T Consensus 293 ~L-t~LP~~---p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N---~L~~LP~---lp~~Lq~LdLS~N----~Ls 355 (788)
T PRK15387 293 QL-TSLPVL---PPGLQELSVSDNQLASLPA-L--PSELCKLWAYNN---QLTSLPT---LPSGLQELSVSDN----QLA 355 (788)
T ss_pred cc-cccccc---ccccceeECCCCccccCCC-C--cccccccccccC---ccccccc---cccccceEecCCC----ccC
Confidence 55 234432 3456666665531 11111 1 124555555555 2222332 1135677777654 333
Q ss_pred eeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeecc
Q 045113 678 KIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGT 757 (821)
Q Consensus 678 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 757 (821)
.+. ..+++|+.|++++|.+.. +|.. .++|+.|+|++|.+... + ..+++|+.|++++| .+..+|..
T Consensus 356 ~LP----~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L--P---~l~s~L~~LdLS~N-~LssIP~l- 420 (788)
T PRK15387 356 SLP----TLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL--P---VLPSELKELMVSGN-RLTSLPML- 420 (788)
T ss_pred CCC----CCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCC--C---CcccCCCEEEccCC-cCCCCCcc-
Confidence 321 124577778888877653 3322 34688888887776642 1 13467888888887 46666642
Q ss_pred ccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 758 GAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 758 ~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
+.+|+.|++++|. ++.+|..+.++++|+.|++++++
T Consensus 421 --~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 --PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 3567888888775 56788888888889999988876
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.1e-13 Score=160.56 Aligned_cols=242 Identities=17% Similarity=0.058 Sum_probs=167.2
Q ss_pred CCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceE
Q 045113 490 PHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYT 569 (821)
Q Consensus 490 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 569 (821)
++|+.|.+.++.... ++ ..+++|+.|+|++|.++.+|.. .++|++|++++|.+..+|... .+|+.
T Consensus 222 ~~L~~L~L~~N~Lt~----LP----~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp----~~L~~ 286 (788)
T PRK15387 222 AHITTLVIPDNNLTS----LP----ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP----SGLCK 286 (788)
T ss_pred cCCCEEEccCCcCCC----CC----CCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch----hhcCE
Confidence 467788877766542 11 2357899999999998888753 357888999999888887533 46778
Q ss_pred EecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecccccc
Q 045113 570 LDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGDLSYN 648 (821)
Q Consensus 570 L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 648 (821)
|++++|.+..+|.. +++|+.|++++|.+. .+|... .+|+.|++.+|. ..++. + ..+|+.|++++|.
T Consensus 287 L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~~LP~-l--p~~Lq~LdLS~N~--- 353 (788)
T PRK15387 287 LWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTSLPT-L--PSGLQELSVSDNQ--- 353 (788)
T ss_pred EECcCCcccccccc---ccccceeECCCCccc-cCCCCc---ccccccccccCccccccc-c--ccccceEecCCCc---
Confidence 89999988888763 578999999998884 455432 346666665532 11111 1 1478899998873
Q ss_pred hhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCe
Q 045113 649 QSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRK 728 (821)
Q Consensus 649 ~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 728 (821)
...+|.. ..+|+.|+++.| .|..+. ..+++|+.|+|++|.++. .|.. .++|+.|++++|.+...
T Consensus 354 Ls~LP~l---p~~L~~L~Ls~N----~L~~LP----~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI- 417 (788)
T PRK15387 354 LASLPTL---PSELYKLWAYNN----RLTSLP----ALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL- 417 (788)
T ss_pred cCCCCCC---Ccccceehhhcc----ccccCc----ccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-
Confidence 3334432 246777777754 333321 124689999999998764 3332 36799999998887652
Q ss_pred eeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccc
Q 045113 729 LTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQ 780 (821)
Q Consensus 729 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~ 780 (821)
+ ..+.+|+.|++++| .+..+|..++.+++|+.|++++|+.....|..
T Consensus 418 -P---~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 418 -P---MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred -C---cchhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 2 23457899999987 58888888889999999999999865554443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-15 Score=137.95 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=114.0
Q ss_pred ccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceee
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLN 594 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 594 (821)
-.+.++..|-|++|.++..|+.|..+.+|+.|++++|+|+++|.++. .+++|+.|+++.|.+..+|.+|+.++.|+.||
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34566777788888888888888888888888888888888888888 88888888888888888888888888888888
Q ss_pred cCCcccCC-CCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeec
Q 045113 595 FGSITLPA-HPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLAN 669 (821)
Q Consensus 595 L~~~~~~~-~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 669 (821)
+++|++.. .+|..|-.++.|+.|++.+| ...|.+ ++++++|+.|.+..+ ..-.+|..++.++.|+.|.+.+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc
Confidence 88877754 56777777777777777774 456667 788888888877776 4556677777666666666554
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=8.7e-16 Score=139.26 Aligned_cols=160 Identities=26% Similarity=0.365 Sum_probs=140.2
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
+++++..|.++.+... ..+.-+..+++|++|++++|+++++|.+|+.++.||.|++.-|.+..+|..++ .++-|
T Consensus 31 ~~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg-s~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG-SFPAL 104 (264)
T ss_pred chhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC-CCchh
Confidence 6778888888887765 33445688999999999999999999999999999999999999999999999 99999
Q ss_pred eEEecCCccc--ccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEec
Q 045113 568 YTLDMPFSYI--DHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 568 ~~L~L~~~~l--~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~ 643 (821)
+.|||.+|++ ..+|..|..|+.|+-|+++.|.+ ..+|..++++++||.|.+.+| -+.|.+ ++.++.|++|+|.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhccc
Confidence 9999999955 56799999999999999999988 778889999999999999986 478889 99999999999999
Q ss_pred ccccchhHHHHHccC
Q 045113 644 DLSYNQSLLSKSLCR 658 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~ 658 (821)
+ ....+|..+++
T Consensus 183 n---rl~vlppel~~ 194 (264)
T KOG0617|consen 183 N---RLTVLPPELAN 194 (264)
T ss_pred c---eeeecChhhhh
Confidence 8 44555555544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2e-13 Score=159.55 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=120.3
Q ss_pred CCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceE
Q 045113 490 PHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYT 569 (821)
Q Consensus 490 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 569 (821)
++++.|.+.++.... .+..++ ++|+.|+|++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|++
T Consensus 199 ~~L~~L~Ls~N~Lts----LP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~---s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNELKS----LPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP---SALQS 266 (754)
T ss_pred cCCcEEEecCCCCCc----CChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh---CCCCE
Confidence 456777776665542 222222 467777777777777766543 367777777777777776654 36777
Q ss_pred EecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEeccccc
Q 045113 570 LDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSY 647 (821)
Q Consensus 570 L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 647 (821)
|++++|.+..+|..+. ++|++|++++|.+. .+|..+. ++|+.|++..| ...+.. + .++|+.|++++|.
T Consensus 267 L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~-- 336 (754)
T PRK15370 267 LDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPET-L--PPGLKTLEAGENA-- 336 (754)
T ss_pred EECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcc-c--cccceeccccCCc--
Confidence 7777777777776543 46777777777663 3554332 35666666553 122222 2 2456666666652
Q ss_pred chhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCC
Q 045113 648 NQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGR 727 (821)
Q Consensus 648 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 727 (821)
...+|..+. ++|+.|+++.| ++..+.- ..+++|+.|+|++|.++ ..|+.+. ++|+.|++++|.+...
T Consensus 337 -Lt~LP~~l~--~sL~~L~Ls~N----~L~~LP~---~lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 337 -LTSLPASLP--PELQVLDVSKN----QITVLPE---TLPPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL 403 (754)
T ss_pred -cccCChhhc--CcccEEECCCC----CCCcCCh---hhcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC
Confidence 222333332 45666666543 2332210 11345666666666654 2333332 2456666665555421
Q ss_pred e--eeecCCCCcccceeeeccCC
Q 045113 728 K--LTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 728 ~--~~~~~~~~~~L~~L~L~~~~ 748 (821)
. ++.....++++..|.+.+|+
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCC
Confidence 1 11112234555666666653
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=5.6e-14 Score=151.96 Aligned_cols=263 Identities=19% Similarity=0.140 Sum_probs=139.8
Q ss_pred hhHHhhccCCceeEEEeCCCCCC-----cccccccCCCCceEEeecCCCCcc-------ccHHHHhccccceEEecCCcc
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLN-----QYPSEIENLSLLRYLKLNIPSLKS-------LPLSFFNYLLNLYTLDMPFSY 576 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~~L~~L~~L~L~~~~ 576 (821)
.+...|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+. ++++|+.|++++|.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 92 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLSDNA 92 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH-hcCceeEEEccCCC
Confidence 45567788888999999999874 456667778888999888876652 334555 67788888888886
Q ss_pred cc-cchhhhccCcc---CceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCC-CCCCeEEEeccccc--ch
Q 045113 577 ID-HTADEFWKMKK---LRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRL-PNLRNLRIQGDLSY--NQ 649 (821)
Q Consensus 577 l~-~lp~~i~~l~~---L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~--~~ 649 (821)
+. ..+..+..+.+ |++|++++|.+...... ..... +..+ ++|+.|++++|.-. ..
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-----------------~l~~~-l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR-----------------LLAKG-LKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHH-----------------HHHHH-HHhCCCCceEEEcCCCcCCchHH
Confidence 65 34455555544 88888887766421000 00111 3444 56666666665311 11
Q ss_pred hHHHHHccCCCCcCEEEeecCCCCCCCCeeEe----cccCCCCCcceEEEecccCCCCC----cccccCCCCCCEEEEec
Q 045113 650 SLLSKSLCRLSCLESLKLANESKMPRLSKIIL----AEYVFPHSLTHLSFSNTDLMDDP----MPALEKLPLLQVLKLKQ 721 (821)
Q Consensus 650 ~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l----~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~ 721 (821)
..++..+..+++|+.|+++++ ++..-.+ ..+..+++|+.|++++|.+.+.. ...+..+++|++|++++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 155 EALAKALRANRDLKELNLANN----GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC----CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 233444555555666665532 2221000 00223346666666666554322 22344566666666666
Q ss_pred cccCCCeeeecCC----CCcccceeeeccCCCcc-----ceeeccccccccceeEEeecCCCCC----CccccCCC-CCC
Q 045113 722 NSYSGRKLTCGSD----GFPRLKVLHLKSMLWLE-----EWTMGTGAMPKLECLIINPCAYLKK----MPEQLWCI-KSL 787 (821)
Q Consensus 722 ~~~~~~~~~~~~~----~~~~L~~L~L~~~~~l~-----~~~~~~~~l~~L~~L~i~~c~~l~~----lp~~l~~l-~~L 787 (821)
|.+.+..+..... ..+.|++|++++|. +. .+......+++|+.|++++|..-.. +...+... +.|
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence 5554321111011 23566666666653 22 1122233445666666666654321 22223333 455
Q ss_pred CEEEEeCC
Q 045113 788 NNFNCWWP 795 (821)
Q Consensus 788 ~~L~l~~c 795 (821)
++|++.+.
T Consensus 310 ~~~~~~~~ 317 (319)
T cd00116 310 ESLWVKDD 317 (319)
T ss_pred hhcccCCC
Confidence 55555443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=1.4e-13 Score=148.84 Aligned_cols=133 Identities=14% Similarity=-0.013 Sum_probs=95.4
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCc-------ccccccCCCCceEEeecCCCCc-cccHH
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQ-------YPSEIENLSLLRYLKLNIPSLK-SLPLS 559 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-------lp~~i~~l~~Lr~L~L~~~~i~-~lp~~ 559 (821)
..++|+.|.+.++.........+...+...+.|+.|+++++.+.. ++..+.++++|++|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 566799999998876431222455667788899999999987652 3456778999999999999987 45555
Q ss_pred HHhcccc---ceEEecCCcccc-----cchhhhccC-ccCceeecCCcccCCC----CCCCcCCCCCcceecccc
Q 045113 560 FFNYLLN---LYTLDMPFSYID-----HTADEFWKM-KKLRHLNFGSITLPAH----PGNYCGSLENLNFISALY 621 (821)
Q Consensus 560 i~~~L~~---L~~L~L~~~~l~-----~lp~~i~~l-~~L~~L~L~~~~~~~~----~p~~i~~l~~L~~L~~~~ 621 (821)
+. .+.+ |+.|++++|.+. .+...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++..
T Consensus 101 ~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 101 LE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 55 6665 999999999765 234456677 8999999999988632 223344445555555544
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=3.4e-12 Score=151.56 Aligned_cols=149 Identities=25% Similarity=0.204 Sum_probs=119.1
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCC--CCcccc-cccCCCCceEEeecCCC-CccccHHHHhc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLV--LNQYPS-EIENLSLLRYLKLNIPS-LKSLPLSFFNY 563 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--l~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~~i~~~ 563 (821)
....+|...+.++.... . .--..++.|++|-+.++. +..++. .|..+++||+|||++|. +..+|.+|+ +
T Consensus 521 ~~~~~rr~s~~~~~~~~-----~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~ 593 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH-----I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-E 593 (889)
T ss_pred chhheeEEEEeccchhh-----c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-h
Confidence 66778888887776542 1 111344579999999986 555554 47789999999999875 779999999 9
Q ss_pred cccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceecccc-C----CcchhhhcCCCCCCCe
Q 045113 564 LLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALY-P----CCCTKDLLGRLPNLRN 638 (821)
Q Consensus 564 L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~-~----~~~~~~~l~~l~~L~~ 638 (821)
|-+|++|+++++.+..+|.++.+|.+|.+||+.++.....+|..+..|.+|++|.+.. . .....+ +.++.+|+.
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhh
Confidence 9999999999999999999999999999999998877666677677799999999887 2 355666 777777877
Q ss_pred EEEecc
Q 045113 639 LRIQGD 644 (821)
Q Consensus 639 L~l~~~ 644 (821)
|.+...
T Consensus 673 ls~~~~ 678 (889)
T KOG4658|consen 673 LSITIS 678 (889)
T ss_pred heeecc
Confidence 777554
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=5.8e-13 Score=136.41 Aligned_cols=251 Identities=17% Similarity=0.146 Sum_probs=145.7
Q ss_pred ceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCcccc-HHHHhccccceEEecCC-cccccchh-hhccCccCceee
Q 045113 519 LLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPF-SYIDHTAD-EFWKMKKLRHLN 594 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~-~~l~~lp~-~i~~l~~L~~L~ 594 (821)
.-..++|..|+|+.+|+ +|+.+++||.||||+|.|+.+- ..+. .|.+|-+|-+.+ |+|+.+|. .|++|..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 35668888888888874 6788889999999999888554 4454 888877776666 68888876 567888888888
Q ss_pred cCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccc----------cchhHHHHHccCCCCc
Q 045113 595 FGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLS----------YNQSLLSKSLCRLSCL 662 (821)
Q Consensus 595 L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~----------~~~~~l~~~l~~~~~L 662 (821)
+.-|++.....+.+..+++|..|.+++| .......+..+..++.+.+..+.. ......+..++.....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8888876656666788888888888774 334443366666777666554420 0011111122211111
Q ss_pred CEEEeecC-C-------CCCCCCee--Eec------c------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEe
Q 045113 663 ESLKLANE-S-------KMPRLSKI--ILA------E------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLK 720 (821)
Q Consensus 663 ~~L~l~~~-~-------~~~~L~~l--~l~------~------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 720 (821)
....+... + -...++++ .+. + +..+++|+.|+|++|+++.....+|.++..+++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 11111110 0 00001111 000 0 4456666666666666666556666666666666666
Q ss_pred ccccCCCeeeecCCCCcccceeeeccCCCccce-eeccccccccceeEEeecC
Q 045113 721 QNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW-TMGTGAMPKLECLIINPCA 772 (821)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~i~~c~ 772 (821)
.|.+.... ...+.++..|+.|+|.+| +++.+ |..+..+.+|.+|.+-.||
T Consensus 307 ~N~l~~v~-~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 307 RNKLEFVS-SGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchHHHHH-HHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCc
Confidence 55543321 122455666666666665 33333 3345555566666665544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=1.4e-11 Score=126.33 Aligned_cols=229 Identities=18% Similarity=0.166 Sum_probs=136.3
Q ss_pred CCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecC-CCCccccHHHHhccccc
Q 045113 490 PHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNI-PSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 490 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~-~~i~~lp~~i~~~L~~L 567 (821)
+....+.+..+.... +++.+|+.++.||.|||++|.|+.+ |..|..+..|-.|-+.+ |+|.++|+.....|..|
T Consensus 67 ~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 345556666666543 7778888888888888888888744 66777777777766666 77888887766688888
Q ss_pred eEEecCCcccccc-hhhhccCccCceeecCCcccCCCCCC-CcCCCCCcceeccccCC----c-----------chhhhc
Q 045113 568 YTLDMPFSYIDHT-ADEFWKMKKLRHLNFGSITLPAHPGN-YCGSLENLNFISALYPC----C-----------CTKDLL 630 (821)
Q Consensus 568 ~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~-~i~~l~~L~~L~~~~~~----~-----------~~~~~l 630 (821)
+.|.+.-|.+..+ ...+..|++|..|.+..|.+ ..++. .+..+.+++++.+..|. . .+.+ +
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-t 220 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-T 220 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-c
Confidence 8888877777666 44677788888887777766 33333 45566666666554420 0 0011 1
Q ss_pred CCCCCCCeEEEeccc---------ccchhH---------------HHHHccCCCCcCEEEeecCC----------CCCCC
Q 045113 631 GRLPNLRNLRIQGDL---------SYNQSL---------------LSKSLCRLSCLESLKLANES----------KMPRL 676 (821)
Q Consensus 631 ~~l~~L~~L~l~~~~---------~~~~~~---------------l~~~l~~~~~L~~L~l~~~~----------~~~~L 676 (821)
+.........+.... ....+. -...|.++++|+.|++++|- ....+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 111111100000000 000001 11235566677777776641 22333
Q ss_pred CeeEecc----------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEecccc
Q 045113 677 SKIILAE----------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSY 724 (821)
Q Consensus 677 ~~l~l~~----------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 724 (821)
+.|++.. +..+++|+.|+|++|+++...|..|..+.+|.+|+|-.|.+
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 3444333 56677777778877777766677777777777777765543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-10 Score=118.83 Aligned_cols=235 Identities=21% Similarity=0.179 Sum_probs=145.0
Q ss_pred cCCCCceEEeecCCCCccccH--HHHhccccceEEecCCcc---cccchhhhccCccCceeecCCcccCCCCCCCcCCCC
Q 045113 538 ENLSLLRYLKLNIPSLKSLPL--SFFNYLLNLYTLDMPFSY---IDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLE 612 (821)
Q Consensus 538 ~~l~~Lr~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~---l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~ 612 (821)
.++..||...|.++.+...+. ... .|++++.|||+.|- +..+-.-...||+|+.|+++.|.+.......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k-~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSK-ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----- 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhh-hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----
Confidence 466777777887777776553 444 77888888888873 3344445567888888888877762211110
Q ss_pred CcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcce
Q 045113 613 NLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTH 692 (821)
Q Consensus 613 ~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~ 692 (821)
. -..+++|+.|.++.|. .....+-..+..+++|+.|.+..|- .+- ..-.....+..|+.
T Consensus 192 --~--------------~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~---~~~-~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 192 --T--------------TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE---IIL-IKATSTKILQTLQE 250 (505)
T ss_pred --c--------------hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc---ccc-eecchhhhhhHHhh
Confidence 0 1134556667777664 2345555555666777777776540 000 00011234667888
Q ss_pred EEEecccCCC-CCcccccCCCCCCEEEEeccccCCCeeeec-----CCCCcccceeeeccCCCccceee--ccccccccc
Q 045113 693 LSFSNTDLMD-DPMPALEKLPLLQVLKLKQNSYSGRKLTCG-----SDGFPRLKVLHLKSMLWLEEWTM--GTGAMPKLE 764 (821)
Q Consensus 693 L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~ 764 (821)
|+|++|.+.. +.....+.||.|+.|+++.+.+.....+.. ...||+|++|.+..|+ +..|+. ....+++|+
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLK 329 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhh
Confidence 8888887654 334567889999999998777655433222 4679999999999984 555643 355678888
Q ss_pred eeEEeecCCCCCC----ccccCCCCCCCEEEEeCCcHHHH
Q 045113 765 CLIINPCAYLKKM----PEQLWCIKSLNNFNCWWPQPELR 800 (821)
Q Consensus 765 ~L~i~~c~~l~~l----p~~l~~l~~L~~L~l~~c~~~~~ 800 (821)
.|.+..++..+.- -..+..+++|..|+=.+|.+..+
T Consensus 330 ~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eR 369 (505)
T KOG3207|consen 330 HLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNER 369 (505)
T ss_pred hhhcccccccccccceeEEeeeehhhhhhhcccccChHHh
Confidence 8888766644311 11345566666666555654443
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=7.8e-11 Score=119.64 Aligned_cols=254 Identities=18% Similarity=0.173 Sum_probs=162.5
Q ss_pred hhHHhhccCCceeEEEeCCCCCC-----cccccccCCCCceEEeecCCC----CccccHHH-------HhccccceEEec
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLN-----QYPSEIENLSLLRYLKLNIPS----LKSLPLSF-------FNYLLNLYTLDM 572 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~----i~~lp~~i-------~~~L~~L~~L~L 572 (821)
........+..+..|+|++|.+. .+-+.+.+.++||.-++++-. ...+|+.+ . .+++|++|||
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~-~~~~L~~ldL 99 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALL-GCPKLQKLDL 99 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHh-cCCceeEeec
Confidence 44556677788888888888876 344556677788888887632 22555433 3 4568888888
Q ss_pred CCcccc-----cchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEeccc--
Q 045113 573 PFSYID-----HTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDL-- 645 (821)
Q Consensus 573 ~~~~l~-----~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-- 645 (821)
|+|.+. .+-.-+.++..|++|+|++|.+...-...++. .|.+|.. ... .++-++||.+....|.
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~~------~kk-~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELAV------NKK-AASKPKLRVFICGRNRLE 170 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHHH------Hhc-cCCCcceEEEEeeccccc
Confidence 888432 23345667888999988888763211111111 1222220 111 5666788888888775
Q ss_pred ccchhHHHHHccCCCCcCEEEeecCC-CCCCCCeeEecccCCCCCcceEEEecccCCCCC----cccccCCCCCCEEEEe
Q 045113 646 SYNQSLLSKSLCRLSCLESLKLANES-KMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDP----MPALEKLPLLQVLKLK 720 (821)
Q Consensus 646 ~~~~~~l~~~l~~~~~L~~L~l~~~~-~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~ 720 (821)
+.....+...+...+.|+.+.+..|. .++.. .+-..++..|++|+.|+|..|.++... ...+..+|+|+.|+++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 23445666777777888888888652 22222 222333778899999999998876432 3356678889999999
Q ss_pred ccccCCCee----eecCCCCcccceeeeccCCCcc----ceeeccccccccceeEEeecCC
Q 045113 721 QNSYSGRKL----TCGSDGFPRLKVLHLKSMLWLE----EWTMGTGAMPKLECLIINPCAY 773 (821)
Q Consensus 721 ~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~i~~c~~ 773 (821)
+|.+....- .....++|+|+.|.+.+|..-. .+.......|.|++|++++|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 887765331 1123458999999999874222 1222345689999999999874
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.95 E-value=5.9e-11 Score=123.01 Aligned_cols=291 Identities=18% Similarity=0.149 Sum_probs=159.7
Q ss_pred CceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCC-CC--cccccccCCCCceEEeecCCC-Cccc-cHHHHhccc
Q 045113 491 HLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLV-LN--QYPSEIENLSLLRYLKLNIPS-LKSL-PLSFFNYLL 565 (821)
Q Consensus 491 ~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~--~lp~~i~~l~~Lr~L~L~~~~-i~~l-p~~i~~~L~ 565 (821)
.|+.|.+.|..... ...+..+-..+++++.|++.+|. ++ .+.+.-..+..|++|++..|. ++.. -..+...++
T Consensus 139 ~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 44555555544331 23445566677777777777776 33 222222356677777777743 4421 123444677
Q ss_pred cceEEecCCc-cccc--chhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEe
Q 045113 566 NLYTLDMPFS-YIDH--TADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQ 642 (821)
Q Consensus 566 ~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~ 642 (821)
+|.+|++++| .+.. +..-...+.+|+.+.+.+|.-. + |+.| ..+-+.+..+-++++.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---~--------le~l---------~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---E--------LEAL---------LKAAAYCLEILKLNLQ 276 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---c--------HHHH---------HHHhccChHhhccchh
Confidence 7777777777 4433 2222233444444433333210 0 0000 0001122223333333
Q ss_pred cccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecc-cCCCCCcceEEEeccc-CCCCCccccc-CCCCCCEEEE
Q 045113 643 GDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAE-YVFPHSLTHLSFSNTD-LMDDPMPALE-KLPLLQVLKL 719 (821)
Q Consensus 643 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~-~~~~~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L 719 (821)
.|.......+-..-..+..|+.|..+ .+.++....+.. ...+++|+.|.++.|+ +++.-...++ +++.|+.|++
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s---~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYS---SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhccc---CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 33211222222222334455555555 333333333322 2356777777777774 4444455555 6788888888
Q ss_pred eccccCCCe-eeecCCCCcccceeeeccCCCccce-----eeccccccccceeEEeecCCCCC-CccccCCCCCCCEEEE
Q 045113 720 KQNSYSGRK-LTCGSDGFPRLKVLHLKSMLWLEEW-----TMGTGAMPKLECLIINPCAYLKK-MPEQLWCIKSLNNFNC 792 (821)
Q Consensus 720 ~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~~l~~L~~L~i~~c~~l~~-lp~~l~~l~~L~~L~l 792 (821)
.++...... +.....+++.|+.|.|++|..+..- .....++..|+.+++++||.+.. .-..+..+++|+.+++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 766543322 3344567899999999988765533 22335688899999999997653 3345778899999999
Q ss_pred eCCcHHHHHHHhhc
Q 045113 793 WWPQPELRQKLREF 806 (821)
Q Consensus 793 ~~c~~~~~~~~~~~ 806 (821)
.+|..-.++-+++.
T Consensus 434 ~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 434 IDCQDVTKEAISRF 447 (483)
T ss_pred echhhhhhhhhHHH
Confidence 99997777777764
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.85 E-value=3.6e-07 Score=101.85 Aligned_cols=276 Identities=14% Similarity=0.093 Sum_probs=152.5
Q ss_pred CCCCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIII 242 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 242 (821)
.+..++||++++++|...|... ......+.|+|.+|+|||++++.++++.......-..+++.+....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 4567999999999999998543 23345678999999999999999998432222123456676666677888999999
Q ss_pred HHhCCc-h--------h-HHHHHHHhC--CCcEEEEEecCCCH------HHHHHHHHhCCCCCCCcE--EEEEecchhhh
Q 045113 243 KFLMPS-S--------R-LIILHEYLM--TKRYLIVIDDVWSI------EVWDIIREILPDNQNGSR--VLITLAKIDTV 302 (821)
Q Consensus 243 ~~l~~~-~--------~-~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~--iiiTtr~~~v~ 302 (821)
.++... . + ...+.+.+. +++.+||||+++.. +.+..+...+.. ..+++ ||.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence 988652 1 1 355555554 45689999999753 234444333322 22334 56665554433
Q ss_pred ccc-------------ccccCCc---------------CCCCc-cchHHHHHHHc----CCchHHHHHhhc-------cc
Q 045113 303 TLF-------------QFENGQN---------------IRLDL-VPTGGPLRVTY----QGWPFHILYHGS-------IS 342 (821)
Q Consensus 303 ~lf-------------~~~~~~~---------------~~~~~-~~~~~~i~~~c----~glPLai~~~g~-------~~ 342 (821)
+.+ .|..-.. ....+ .+..+.|++.+ |..+.|+.++-. ..
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 110 0111000 00011 12223333333 446666665531 00
Q ss_pred ccccchhccccc-----hhHHHHhhhcCChhhHHHHhhcc-cCCC-CceechhhHHHH--HHHcCCCC-CChHHHHHHHH
Q 045113 343 LEENKREAIAKP-----IFLQSVAYCMLPFPLKLCCLYLP-VFPA-HLEISTRQLYQL--WIAEGFIP-DNSEATAEKYL 412 (821)
Q Consensus 343 ~~~~~~~~i~~~-----~~~l~~sy~~L~~~~k~cfl~~s-~Fp~-~~~i~~~~Li~~--W~aeg~i~-~~~~~~~~~~~ 412 (821)
...-..+.+..+ .....-.+..||.+.|.-+..++ .... ...+...++... .+++.+-. +-....-..|+
T Consensus 267 ~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l 346 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYI 346 (394)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHH
Confidence 110011112100 13344567889998775544433 2221 134666666643 33432221 11223346699
Q ss_pred HHHHhCCceeeeec--CCCCCEEEEEeCcch
Q 045113 413 EQLINRGFVEVKKR--RAGGTINTCSIRSRC 441 (821)
Q Consensus 413 ~~L~~r~ll~~~~~--~~~~~~~~~~mHdlv 441 (821)
.+|.+.+++..... +..|+.+.++.+.--
T Consensus 347 ~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~ 377 (394)
T PRK00411 347 NKLDMLGIINTRYSGKGGRGRTRLISLSYDP 377 (394)
T ss_pred HHHHhcCCeEEEEecCCCCCCeEEEEecCCH
Confidence 99999999987543 345666666665433
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.3e-10 Score=124.63 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=128.2
Q ss_pred HHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccC
Q 045113 511 QKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKL 590 (821)
Q Consensus 511 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L 590 (821)
+.-+..|-.|..|.|..|.+..+|..++++..|.||+|+.|++..+|..++ .| -|+.|.+++|+++.+|..++.++.|
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~l-pLkvli~sNNkl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DL-PLKVLIVSNNKLTSLPEEIGLLPTL 168 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh-cC-cceeEEEecCccccCCcccccchhH
Confidence 344566677888889999888999999999999999999999999999987 55 4899999999999999999988999
Q ss_pred ceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEee
Q 045113 591 RHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLA 668 (821)
Q Consensus 591 ~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~ 668 (821)
.+||.+.|.+ ..+|..++.+.+|+.|.+..| ...+.+ +..|+ |..|++++| ....+|..|.+|++|+.|-|.
T Consensus 169 ~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 169 AHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred HHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCc-eeeeecccC---ceeecchhhhhhhhheeeeec
Confidence 9999999988 667778889999988887775 467777 77554 888999887 677888899999999999888
Q ss_pred cC
Q 045113 669 NE 670 (821)
Q Consensus 669 ~~ 670 (821)
+|
T Consensus 243 nN 244 (722)
T KOG0532|consen 243 NN 244 (722)
T ss_pred cC
Confidence 75
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=3.5e-09 Score=101.38 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=44.9
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
++.++|.|.+.++.... ....-..+..|++|+|++|.++.+. .+..+++|+.|++++|.|..+++.+...+++|
T Consensus 17 n~~~~~~L~L~~n~I~~-----Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-----IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-----ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 45567777777776652 2222235677888888888887765 36778888888888888887766553257888
Q ss_pred eEEecCCcccccch--hhhccCccCceeecCCcccCCCCCC----CcCCCCCcceeccc
Q 045113 568 YTLDMPFSYIDHTA--DEFWKMKKLRHLNFGSITLPAHPGN----YCGSLENLNFISAL 620 (821)
Q Consensus 568 ~~L~L~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~~p~----~i~~l~~L~~L~~~ 620 (821)
++|++++|.+..+. ..+..+++|++|++.+|++... +. .+..+++|+.|+..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 88888888665552 3566788888888888877432 21 23445555555543
No 32
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=1.7e-07 Score=116.41 Aligned_cols=255 Identities=15% Similarity=0.158 Sum_probs=152.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC-CCHHHHHHHHHHHh
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT-CYADQILDIIIKFL 245 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l 245 (821)
..+|-|+. +.+.|... ...+++.|.|++|.||||++...... ++.++|+++... -+...+...++..+
T Consensus 14 ~~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34555554 44444432 35789999999999999999998752 236999998754 45555555555555
Q ss_pred CCc-------h----------h----HHHHHHHhC--CCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 246 MPS-------S----------R----LIILHEYLM--TKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 246 ~~~-------~----------~----~~~l~~~l~--~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
... . + ...+-..+. +.+++||+||+... ...+.+...++....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 310 0 0 112222332 68999999999532 22334444444445567898999984
Q ss_pred hhh---------cccc-------cccCCc--------CCCCccchHHHHHHHcCCchHHHHHhhc----cccccc-----
Q 045113 300 DTV---------TLFQ-------FENGQN--------IRLDLVPTGGPLRVTYQGWPFHILYHGS----ISLEEN----- 346 (821)
Q Consensus 300 ~v~---------~lf~-------~~~~~~--------~~~~~~~~~~~i~~~c~glPLai~~~g~----~~~~~~----- 346 (821)
.-. .+.. |...+. ..+--.+...+|.+.|+|.|+++..++. ..+...
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~ 242 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARR 242 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHh
Confidence 211 0000 111110 0111234567899999999999988871 111110
Q ss_pred ----chhccccchhHH-HHhhhcCChhhHHHHhhcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhCCce
Q 045113 347 ----KREAIAKPIFLQ-SVAYCMLPFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFV 421 (821)
Q Consensus 347 ----~~~~i~~~~~~l-~~sy~~L~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r~ll 421 (821)
....+. ..+ .-.++.||++.+..+...|+++ .++.+ +.. .+.. .+.+...+++|..++++
T Consensus 243 ~~~~~~~~~~---~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~~---~~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 243 LAGINASHLS---DYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVTG---EENGQMRLEELERQGLF 307 (903)
T ss_pred hcCCCchhHH---HHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHcC---CCcHHHHHHHHHHCCCe
Confidence 012234 333 3348899999999999999987 33322 222 1111 22357889999999987
Q ss_pred eeeecCCCCCEEEEEeCcchHHHHHHhcc
Q 045113 422 EVKKRRAGGTINTCSIRSRCWPSLLVVTL 450 (821)
Q Consensus 422 ~~~~~~~~~~~~~~~mHdlv~dla~~~~~ 450 (821)
.....+ .+ ..|+.|++++++......
T Consensus 308 ~~~~~~-~~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 308 IQRMDD-SG--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred eEeecC-CC--CEEehhHHHHHHHHHHHH
Confidence 542211 11 357889999999987653
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=5e-09 Score=100.32 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=30.1
Q ss_pred ccCCceeEEEeCCCCCCccccccc-CCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhc-cCccCce
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIE-NLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFW-KMKKLRH 592 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~-~l~~L~~ 592 (821)
.+...++.|+|.++.|+.+. .++ .+.+|+.|++++|.|..++ .+. .+++|++|++++|.+..++..+. .+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~-~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLP-GLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Ccc-ChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44557899999999998764 465 5889999999999999886 566 89999999999999999976664 6999999
Q ss_pred eecCCcccC
Q 045113 593 LNFGSITLP 601 (821)
Q Consensus 593 L~L~~~~~~ 601 (821)
|++++|.+.
T Consensus 93 L~L~~N~I~ 101 (175)
T PF14580_consen 93 LYLSNNKIS 101 (175)
T ss_dssp EE-TTS---
T ss_pred EECcCCcCC
Confidence 999999873
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.5e-09 Score=107.66 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=61.9
Q ss_pred ccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEe
Q 045113 563 YLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQ 642 (821)
Q Consensus 563 ~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~ 642 (821)
.+..|++|||++|.|+.+-.++.-+|+++.|++++|.+.. +.. +..+++|..|+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-----------------------v~n-La~L~~L~~LDLS 337 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-----------------------VQN-LAELPQLQLLDLS 337 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-----------------------ehh-hhhcccceEeecc
Confidence 3445666666666666666666666666666666665521 222 5666777777777
Q ss_pred cccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCC-CCcccccCCCCCCEEEEec
Q 045113 643 GDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMD-DPMPALEKLPLLQVLKLKQ 721 (821)
Q Consensus 643 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~ 721 (821)
+| ....+..+-.++.+++.|.++.| .++. ++|+..+-+|..|++++|++.+ +....+++||+|+.|.|.+
T Consensus 338 ~N---~Ls~~~Gwh~KLGNIKtL~La~N----~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 338 GN---LLAECVGWHLKLGNIKTLKLAQN----KIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred cc---hhHhhhhhHhhhcCEeeeehhhh----hHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 76 33333333334444444444432 1221 1233344444445555544322 1222334444444444443
Q ss_pred c
Q 045113 722 N 722 (821)
Q Consensus 722 ~ 722 (821)
|
T Consensus 409 N 409 (490)
T KOG1259|consen 409 N 409 (490)
T ss_pred C
Confidence 3
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=5.1e-10 Score=120.18 Aligned_cols=191 Identities=21% Similarity=0.280 Sum_probs=158.4
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCC
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGS 597 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~ 597 (821)
..-...||+.|.+..+|..++.+..|..|.|+.|.+..+|..++ +|..|.+|||+.|.+..+|..++.|+ |+.|-+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~-~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAIC-NLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhh-hhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 34456799999999999999999999999999999999999999 99999999999999999999999998 99999999
Q ss_pred cccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCC
Q 045113 598 ITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 675 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 675 (821)
|++ +.+|..++.+..|..|+.+.| ...+.+ ++.+.+|+.|.+..+ ....+|..+..+ .|..|++++| +
T Consensus 153 Nkl-~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfScN----k 222 (722)
T KOG0532|consen 153 NKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSCN----K 222 (722)
T ss_pred Ccc-ccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecccC----c
Confidence 998 889999998899999998885 578888 999999999999887 677788888844 5888888754 6
Q ss_pred CCeeEecccCCCCCcceEEEecccCCCCCcccc---cCCCCCCEEEEecc
Q 045113 676 LSKIILAEYVFPHSLTHLSFSNTDLMDDPMPAL---EKLPLLQVLKLKQN 722 (821)
Q Consensus 676 L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~ 722 (821)
+..+-+. +..++.|+.|.|.+|.+.. +|..+ |...-.++|+..-|
T Consensus 223 is~iPv~-fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 ISYLPVD-FRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecchh-hhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 6666554 6788999999999998753 33333 23334566666533
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=8.6e-09 Score=114.88 Aligned_cols=128 Identities=22% Similarity=0.236 Sum_probs=102.2
Q ss_pred hccCCceeEEEeCCCCCCcccccccCCC-CceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCce
Q 045113 514 CEMYKLLRVLDLGSLVLNQYPSEIENLS-LLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRH 592 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 592 (821)
...++.+..|++.++.++.+|..++.+. +|++|++++|.+..+|..+. .+++|+.|++++|.+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhh-ccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 4455789999999999999998888885 99999999999999988888 999999999999999999988878999999
Q ss_pred eecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecc
Q 045113 593 LNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 593 L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
|++++|.+ ..+|..+..+..|++|.+..| ...+.. +.++.++..|.+.++
T Consensus 191 L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~~~l~~l~l~~n 242 (394)
T COG4886 191 LDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNN 242 (394)
T ss_pred eeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchh-hhhcccccccccCCc
Confidence 99999988 667776666666777777665 233344 566666666654444
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-09 Score=113.86 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=45.4
Q ss_pred CCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecc------cCCCCCcceEEEecccCCC-CCc
Q 045113 633 LPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAE------YVFPHSLTHLSFSNTDLMD-DPM 705 (821)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~------~~~~~~L~~L~L~~~~l~~-~~~ 705 (821)
+..|+.|+++++.. ........++.++.|+.|+++.+ .+.++.... ...+++|++|+++.|++.+ ...
T Consensus 245 ~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~t----gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 245 LQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSST----GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred hhHHhhccccCCcc-cccccccccccccchhhhhcccc----CcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 34566667766631 11111234556666776666643 222222211 2356777777777776533 223
Q ss_pred ccccCCCCCCEEEEeccccCC
Q 045113 706 PALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 706 ~~l~~l~~L~~L~L~~~~~~~ 726 (821)
..+..+++|+.|.+..|.++.
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhccchhhhhhcccccccc
Confidence 344456666666665554443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.9e-08 Score=112.19 Aligned_cols=193 Identities=25% Similarity=0.264 Sum_probs=140.9
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccc-cceEEecCCcccccchhhhccCccCceeecCCcc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLL-NLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSIT 599 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~ 599 (821)
..|++..+.+...+..+..++.+..|++.++.+..+|.... .+. +|+.|+++++.+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccc-cchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 36788888876555667777899999999999999998887 774 9999999999999999889999999999999999
Q ss_pred cCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCC
Q 045113 600 LPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 677 (821)
Q Consensus 600 ~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~ 677 (821)
+ ..+|...+.+++|+.|++..+ ...+.. ...+..|+.|.++++. ....+..+.++.++..+.+..+ .+.
T Consensus 175 l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~n----~~~ 245 (394)
T COG4886 175 L-SDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELSNN----KLE 245 (394)
T ss_pred h-hhhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCc---ceecchhhhhcccccccccCCc----eee
Confidence 8 667776668888888888884 234443 4455668888888762 3334445556666666655422 222
Q ss_pred eeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 678 KIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 678 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
.+ +...+.+++|+.|++++|.++... .++.+.+|+.|+++++.+..
T Consensus 246 ~~-~~~~~~l~~l~~L~~s~n~i~~i~--~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 246 DL-PESIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ec-cchhccccccceeccccccccccc--cccccCccCEEeccCccccc
Confidence 21 333566777888888888765432 27777888888887766554
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=7.6e-09 Score=102.71 Aligned_cols=134 Identities=23% Similarity=0.207 Sum_probs=98.4
Q ss_pred cCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCccccc
Q 045113 630 LGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALE 709 (821)
Q Consensus 630 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 709 (821)
......|+.|++++| ....+..+..-.+.++.|+++.| .+. .+.+++.+++|+.|+|++|.++ ..-.|-.
T Consensus 280 ~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N----~i~--~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQN----RIR--TVQNLAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred cchHhhhhhcccccc---chhhhhhhhhhccceeEEecccc----cee--eehhhhhcccceEeecccchhH-hhhhhHh
Confidence 455567888888887 55666677777788899998865 222 2344677899999999999864 3334445
Q ss_pred CCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcccee--eccccccccceeEEeecCCCCCCc
Q 045113 710 KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWT--MGTGAMPKLECLIINPCAYLKKMP 778 (821)
Q Consensus 710 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~i~~c~~l~~lp 778 (821)
+|-|.+.|.|++|.+..- .+.+.+-+|..|++.+| +++.+. ..+|++|+|+.|.+.+||. ..+|
T Consensus 350 KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl-~~~v 415 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL-AGSV 415 (490)
T ss_pred hhcCEeeeehhhhhHhhh---hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc-cccc
Confidence 788999999998876542 23456788999999997 566553 3689999999999999984 3344
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.64 E-value=1.2e-08 Score=103.92 Aligned_cols=232 Identities=18% Similarity=0.126 Sum_probs=161.6
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC----ccccc-------ccCCCCceEEeecCCCCc--
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN----QYPSE-------IENLSLLRYLKLNIPSLK-- 554 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~----~lp~~-------i~~l~~Lr~L~L~~~~i~-- 554 (821)
....+..+.++|+.......+.....+.+-+.|+..+++..-.. .+|+. +-.+++|++|+||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 56678888888888775455677788888899999999876422 44443 446679999999998765
Q ss_pred ---cccHHHHhccccceEEecCCcccccchh--------------hhccCccCceeecCCcccCC----CCCCCcCCCCC
Q 045113 555 ---SLPLSFFNYLLNLYTLDMPFSYIDHTAD--------------EFWKMKKLRHLNFGSITLPA----HPGNYCGSLEN 613 (821)
Q Consensus 555 ---~lp~~i~~~L~~L~~L~L~~~~l~~lp~--------------~i~~l~~L~~L~L~~~~~~~----~~p~~i~~l~~ 613 (821)
.+-.-+. .++.|+.|.|.+|.+..... .+.+-++||++..++|.+.. .+...+...+.
T Consensus 108 g~~~l~~ll~-s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLS-SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHH-hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 3334566 78999999999997754422 23456789999999888743 12234566678
Q ss_pred cceeccccCC------cchhhhcCCCCCCCeEEEecccc--cchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecc--
Q 045113 614 LNFISALYPC------CCTKDLLGRLPNLRNLRIQGDLS--YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAE-- 683 (821)
Q Consensus 614 L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~-- 683 (821)
|+++.+..|+ .....++..|++|+.|++.+|.- .-...+...+..+++|+.|++++. .|+.=--..
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc----ll~~~Ga~a~~ 262 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC----LLENEGAIAFV 262 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc----ccccccHHHHH
Confidence 8888887752 23334488999999999998841 123456677888889999988852 111100000
Q ss_pred ---cCCCCCcceEEEecccCCCCCc----ccccCCCCCCEEEEecccc
Q 045113 684 ---YVFPHSLTHLSFSNTDLMDDPM----PALEKLPLLQVLKLKQNSY 724 (821)
Q Consensus 684 ---~~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~ 724 (821)
-...++|..|.|.+|.++.+.. ..+...|.|+.|+|++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2346889999999998764322 2345689999999999988
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2e-09 Score=106.88 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcc-ceeeccccccccceeEEeecC
Q 045113 710 KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLE-EWTMGTGAMPKLECLIINPCA 772 (821)
Q Consensus 710 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~i~~c~ 772 (821)
++|+|..|+|++|..........+..|+.|++|.++.|-.+. +-...+..+|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 566666666665432222222224456666666666664433 222345566666666666664
No 42
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.58 E-value=5.1e-06 Score=91.57 Aligned_cols=106 Identities=21% Similarity=0.144 Sum_probs=77.2
Q ss_pred CCCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccc------ceeEEEEcCCCCCHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF------DCHAWVQEPYTCYADQI 237 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~ 237 (821)
+..++||++++++|..+|... ......+.|+|++|+|||++++.+++. ..... -..+|+.+....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 447999999999999998752 233567899999999999999999973 22111 13567777777777889
Q ss_pred HHHHHHHhC---Cc---h--h----HHHHHHHhC--CCcEEEEEecCCCH
Q 045113 238 LDIIIKFLM---PS---S--R----LIILHEYLM--TKRYLIVIDDVWSI 273 (821)
Q Consensus 238 ~~~i~~~l~---~~---~--~----~~~l~~~l~--~kr~LlVlDdv~~~ 273 (821)
+..|+.++. .. . . ...+.+.+. +++++||||+++.-
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999999883 21 0 1 344555553 56889999999754
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=8e-09 Score=107.46 Aligned_cols=260 Identities=20% Similarity=0.154 Sum_probs=166.5
Q ss_pred CceeEEEeCCCCC-C--cccccccCCCCceEEeecCCC-Cc-cccHHHHhccccceEEecCCc-ccccc-hh-hhccCcc
Q 045113 518 KLLRVLDLGSLVL-N--QYPSEIENLSLLRYLKLNIPS-LK-SLPLSFFNYLLNLYTLDMPFS-YIDHT-AD-EFWKMKK 589 (821)
Q Consensus 518 ~~Lr~L~L~~~~l-~--~lp~~i~~l~~Lr~L~L~~~~-i~-~lp~~i~~~L~~L~~L~L~~~-~l~~l-p~-~i~~l~~ 589 (821)
..|+.|.+.|+.- . .+-....+++++..|++.+|. ++ ..-.++...+++|+.|++..| .++.. -. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3678888888862 2 344445677888888888875 33 233455557888888888887 55543 12 2345888
Q ss_pred CceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeec
Q 045113 590 LRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLAN 669 (821)
Q Consensus 590 L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 669 (821)
|++|+++.|..-.. .+++.+ ...+.+++.+...+|.......+...-..+..+-.+++.
T Consensus 218 L~~lNlSwc~qi~~--------~gv~~~------------~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~- 276 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG--------NGVQAL------------QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ- 276 (483)
T ss_pred HHHhhhccCchhhc--------CcchHH------------hccchhhhhhhhcccccccHHHHHHHhccChHhhccchh-
Confidence 88888887753111 112211 455666666666677544444444333444445555543
Q ss_pred CCCCCCCCeeEecc-cCCCCCcceEEEecccC-CCCCccccc-CCCCCCEEEEeccc-cCCCeeeecCCCCcccceeeec
Q 045113 670 ESKMPRLSKIILAE-YVFPHSLTHLSFSNTDL-MDDPMPALE-KLPLLQVLKLKQNS-YSGRKLTCGSDGFPRLKVLHLK 745 (821)
Q Consensus 670 ~~~~~~L~~l~l~~-~~~~~~L~~L~L~~~~l-~~~~~~~l~-~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~L~ 745 (821)
.|..++.-.+.. ...+..|+.|+.++|.. ++.+...++ +.++|+.|.+.+|. |+...+.....+.+.|+.+++.
T Consensus 277 --~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 277 --HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred --hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 233344333222 34578889999999853 334444555 78999999999875 5555566666789999999999
Q ss_pred cCCCccc--eeeccccccccceeEEeecCCCCCC-----ccccCCCCCCCEEEEeCCcHHHH
Q 045113 746 SMLWLEE--WTMGTGAMPKLECLIINPCAYLKKM-----PEQLWCIKSLNNFNCWWPQPELR 800 (821)
Q Consensus 746 ~~~~l~~--~~~~~~~l~~L~~L~i~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~~~~ 800 (821)
.|..... +.....++|.|++|.+++|...+.- ..+..+...|+.+.+++||.-..
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 9865442 2223457999999999999866543 33445677899999999994433
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.44 E-value=4.2e-06 Score=87.95 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=94.8
Q ss_pred hHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh---
Q 045113 175 RMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR--- 250 (821)
Q Consensus 175 ~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--- 250 (821)
..++++..+... .....++.|+|.+|+||||+++.+++.... ..+ ..+|+ +....+..+++..|+..++...+
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~ 103 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRD 103 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 334455555432 223568999999999999999999985331 111 22343 33345778889999988876421
Q ss_pred ----HHHHHHHh-----CCCcEEEEEecCCCH--HHHHHHHHhCC---CCCCCcEEEEEecchhh--------h------
Q 045113 251 ----LIILHEYL-----MTKRYLIVIDDVWSI--EVWDIIREILP---DNQNGSRVLITLAKIDT--------V------ 302 (821)
Q Consensus 251 ----~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~iiiTtr~~~v--------~------ 302 (821)
...+.+.+ .+++.+||+||++.. ..++.+..... .......|++|....-. .
T Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRI 183 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhhe
Confidence 23333322 678899999999864 45666654332 12222344555432211 0
Q ss_pred ---------------cccc--cccCC-cCCCCc-cchHHHHHHHcCCchHHHHHhhc
Q 045113 303 ---------------TLFQ--FENGQ-NIRLDL-VPTGGPLRVTYQGWPFHILYHGS 340 (821)
Q Consensus 303 ---------------~lf~--~~~~~-~~~~~~-~~~~~~i~~~c~glPLai~~~g~ 340 (821)
+++. +.... .....+ .+..+.|++.++|.|..|..++.
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~ 240 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCD 240 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHH
Confidence 1111 11000 011122 46778899999999999988874
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=3.7e-07 Score=106.84 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=68.3
Q ss_pred ceeEEEeCCCCCC-cccccccCCCCceEEeecCCCCc-cccHHHHhccccceEEecCCcccc-cchhhhccCccCceeec
Q 045113 519 LLRVLDLGSLVLN-QYPSEIENLSLLRYLKLNIPSLK-SLPLSFFNYLLNLYTLDMPFSYID-HTADEFWKMKKLRHLNF 595 (821)
Q Consensus 519 ~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L 595 (821)
.++.|+|+++.+. .+|..++++++|++|+|++|.+. .+|..+. .+++|+.|+|++|.+. .+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3677777777776 67777777888888888887776 7777777 7888888888877664 56777777888888888
Q ss_pred CCcccCCCCCCCcCC
Q 045113 596 GSITLPAHPGNYCGS 610 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~ 610 (821)
++|.+.+.+|..++.
T Consensus 498 s~N~l~g~iP~~l~~ 512 (623)
T PLN03150 498 NGNSLSGRVPAALGG 512 (623)
T ss_pred cCCcccccCChHHhh
Confidence 877777777766554
No 46
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=6.2e-07 Score=91.52 Aligned_cols=82 Identities=10% Similarity=-0.074 Sum_probs=63.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC--CCHHHHHHHH-----HHHhCCchh---------HHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT--CYADQILDII-----IKFLMPSSR---------LII 253 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~---------~~~ 253 (821)
-..++|+|.+|+|||||++.+|++.... +|+.++|+++++. +++.++++.+ +.++..+.. ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999965444 8999999997776 7999999999 555554322 122
Q ss_pred HHHH-hCCCcEEEEEecCCC
Q 045113 254 LHEY-LMTKRYLIVIDDVWS 272 (821)
Q Consensus 254 l~~~-l~~kr~LlVlDdv~~ 272 (821)
...+ -.+++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2221 257999999999954
No 47
>PF05729 NACHT: NACHT domain
Probab=98.41 E-value=8.4e-07 Score=85.62 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=69.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEcCCCCCH---HHHHHHHHHHhCCchh-HHH-HHHH-hCC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHY----FDCHAWVQEPYTCYA---DQILDIIIKFLMPSSR-LII-LHEY-LMT 260 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~---~~~~~~i~~~l~~~~~-~~~-l~~~-l~~ 260 (821)
+++.|+|.+|+||||+++.++..-.-... +...+|+........ ..+...|..+...... ... +... -+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999998874222222 456667765554332 2444445444443322 222 2222 257
Q ss_pred CcEEEEEecCCCHH---------HHHH-HHHhCCC-CCCCcEEEEEecchhhh
Q 045113 261 KRYLIVIDDVWSIE---------VWDI-IREILPD-NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 261 kr~LlVlDdv~~~~---------~~~~-l~~~l~~-~~~gs~iiiTtr~~~v~ 302 (821)
++++||+|+++... .+.. +...++. ..++.+++||+|.....
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP 133 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH
Confidence 99999999997431 1222 2233332 35689999999987774
No 48
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=2.7e-06 Score=79.96 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=73.4
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch
Q 045113 170 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS 249 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 249 (821)
+|++..++.+...+.... ...+.|+|.+|+||||+|+.+++. ....-..++++..+...........+... .
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~ 72 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF----L 72 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh----h
Confidence 478888999988887643 568899999999999999999983 32222346666655544332222111100 0
Q ss_pred hHHHHHHHhCCCcEEEEEecCCCH--HH---HHHHHHhCCCC---CCCcEEEEEecch
Q 045113 250 RLIILHEYLMTKRYLIVIDDVWSI--EV---WDIIREILPDN---QNGSRVLITLAKI 299 (821)
Q Consensus 250 ~~~~l~~~l~~kr~LlVlDdv~~~--~~---~~~l~~~l~~~---~~gs~iiiTtr~~ 299 (821)
...........++.+||+||++.. .. +..+....... ..+..||+||...
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 011112233457889999999853 22 22222333221 3578888888754
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.9e-09 Score=103.55 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=114.1
Q ss_pred cCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecc-cCCCCCcceEEEecccCCCCCcccc
Q 045113 630 LGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAE-YVFPHSLTHLSFSNTDLMDDPMPAL 708 (821)
Q Consensus 630 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~-~~~~~~L~~L~L~~~~l~~~~~~~l 708 (821)
+..|.+|+.|.+.++ ...+.+...+.+-.+|+.|+|+ .++.++...+.- +.+|+.|..|+|+.|.+..+....+
T Consensus 206 Ls~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnls---m~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLS---MCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccc---cccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 777888888888887 4666777777777888888887 344444433322 5678888888888887655433322
Q ss_pred -cC-CCCCCEEEEecccc--CCCeeeecCCCCcccceeeeccCCCccc-eeeccccccccceeEEeecCCCCCCcc---c
Q 045113 709 -EK-LPLLQVLKLKQNSY--SGRKLTCGSDGFPRLKVLHLKSMLWLEE-WTMGTGAMPKLECLIINPCAYLKKMPE---Q 780 (821)
Q Consensus 709 -~~-l~~L~~L~L~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~l~~L~~L~i~~c~~l~~lp~---~ 780 (821)
.+ -++|+.|+|+++.- ....+......+|+|.+|+|++|..++. ....+..|+.|++|.++.|..+- |. .
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~ 358 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLE 358 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeee
Confidence 22 36788888887532 2222333356799999999999987774 23356789999999999998553 33 4
Q ss_pred cCCCCCCCEEEEeCCcHH
Q 045113 781 LWCIKSLNNFNCWWPQPE 798 (821)
Q Consensus 781 l~~l~~L~~L~l~~c~~~ 798 (821)
+...|+|.+|++.||-..
T Consensus 359 l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eccCcceEEEEeccccCc
Confidence 678899999999998643
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=2.2e-08 Score=98.36 Aligned_cols=250 Identities=18% Similarity=0.158 Sum_probs=167.3
Q ss_pred hccCCceeEEEeCCCCCC-----cccccccCCCCceEEeecCCCCc----ccc-------HHHHhccccceEEecCCccc
Q 045113 514 CEMYKLLRVLDLGSLVLN-----QYPSEIENLSLLRYLKLNIPSLK----SLP-------LSFFNYLLNLYTLDMPFSYI 577 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~----~lp-------~~i~~~L~~L~~L~L~~~~l 577 (821)
+.-+..+..+|||||.|. .+...|.+-.+|+..+++.-... .+| +.+. +|++|++.+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeecccccc
Confidence 344788899999999886 35556667788998888863211 344 3445 789999999999944
Q ss_pred c-c----chhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEeccc--ccchh
Q 045113 578 D-H----TADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDL--SYNQS 650 (821)
Q Consensus 578 ~-~----lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~ 650 (821)
. + +-+.|.+-+.|.||.+++|.+...-..-|++ .|++|.. ... ..+-|.|+...+..|. +....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~------nKK-aa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAY------NKK-AADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHH------Hhh-hccCCCceEEEeccchhccCcHH
Confidence 3 2 2345678889999999999773211111221 2333321 112 4566788888877764 22333
Q ss_pred HHHHHccCCCCcCEEEeecCC-CCCCCCeeEecccCCCCCcceEEEecccCCCCCc----ccccCCCCCCEEEEeccccC
Q 045113 651 LLSKSLCRLSCLESLKLANES-KMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPM----PALEKLPLLQVLKLKQNSYS 725 (821)
Q Consensus 651 ~l~~~l~~~~~L~~L~l~~~~-~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~ 725 (821)
.....+..-.+|..+.+..|. .+..++.|...|+..+.+|+.|+|..|.++-... ..+..++.|+.|.+..|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 344455555688999998763 5666777777788899999999999998765333 23456788999999987765
Q ss_pred CCeee-----ecCCCCcccceeeeccCCCcccee-------eccccccccceeEEeecCC
Q 045113 726 GRKLT-----CGSDGFPRLKVLHLKSMLWLEEWT-------MGTGAMPKLECLIINPCAY 773 (821)
Q Consensus 726 ~~~~~-----~~~~~~~~L~~L~L~~~~~l~~~~-------~~~~~l~~L~~L~i~~c~~ 773 (821)
..... +.-..+|+|..|.+.++..-..+. +..+++|-|..|.+.+|..
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 53321 223357999999998875433221 2346899999999998864
No 51
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.33 E-value=1.6e-06 Score=88.98 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=42.6
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC
Q 045113 169 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC 232 (821)
Q Consensus 169 ~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 232 (821)
|+||+.++++|.+++..+. .+.+.|+|..|+|||+|++.+.+ ..+..-..++|+...+..
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~ 60 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEES 60 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBS
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccch
Confidence 6899999999999998764 67899999999999999999998 443222245555544443
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.33 E-value=1.1e-06 Score=94.19 Aligned_cols=228 Identities=15% Similarity=0.100 Sum_probs=118.6
Q ss_pred CCeeechhhHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
.+|+|++..++++..++... ......+.++|++|+|||+||+.+.+ +....|. .+..+.......+. ..+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~~---~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNLK---ITSGPALEKPGDLA-AILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCEE---EeccchhcCchhHH-HHHH
Confidence 36899999999999888642 23356688999999999999999998 3332221 12211111111111 1112
Q ss_pred HhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCC-------------------CCCCCcEEEEEecchhhh
Q 045113 244 FLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILP-------------------DNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 244 ~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~-------------------~~~~gs~iiiTtr~~~v~ 302 (821)
.+ +...+|++|++... ...+.+...+. ...+.+-|..||+...+.
T Consensus 78 ~~--------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 78 NL--------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLT 143 (305)
T ss_pred hc--------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccC
Confidence 21 12345566665421 11122211110 011244555666654333
Q ss_pred c-c---c----ccccCCc-------------CCCCc-cchHHHHHHHcCCchHHHHHhhcccccc---------c--chh
Q 045113 303 T-L---F----QFENGQN-------------IRLDL-VPTGGPLRVTYQGWPFHILYHGSISLEE---------N--KRE 349 (821)
Q Consensus 303 ~-l---f----~~~~~~~-------------~~~~~-~~~~~~i~~~c~glPLai~~~g~~~~~~---------~--~~~ 349 (821)
. + | .|..-.. ....+ .+....|++.|+|.|-.+.-+....|.. . ...
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~ 223 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL 223 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 1 0 1 0111000 01111 3456789999999996554444222211 1 112
Q ss_pred ccccchhHHHHhhhcCChhhHHHHh-hcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHH-HHHhCCceeeee
Q 045113 350 AIAKPIFLQSVAYCMLPFPLKLCCL-YLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLE-QLINRGFVEVKK 425 (821)
Q Consensus 350 ~i~~~~~~l~~sy~~L~~~~k~cfl-~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~-~L~~r~ll~~~~ 425 (821)
... ..+...|..|+++.+..+. ..+.++.+ .+..+++.... | .....++..++ .|++++|+....
T Consensus 224 ~~l---~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g----~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 224 KAL---EMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G----EDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred HHH---HHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C----CCcchHHHhhhHHHHHcCCcccCC
Confidence 222 4466678888888776555 55666544 45544433321 1 22345666677 699999997444
No 53
>PTZ00202 tuzin; Provisional
Probab=98.32 E-value=3.8e-05 Score=82.14 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=61.9
Q ss_pred CCCCCCCCCeeechhhHHHHHHHHhcCC-CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHH
Q 045113 160 ASLSFKNRDTVGLDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 160 ~~~~~~~~~~vGr~~~~~~i~~~L~~~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 238 (821)
.+.+.+...|+||+.+...+...|...+ ...+++.|.|++|+|||||++.+..... + ..++.-+. +..+++
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElL 326 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTL 326 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHH
Confidence 3444567789999999999999997543 2356999999999999999999997322 1 23333333 679999
Q ss_pred HHHHHHhCCc
Q 045113 239 DIIIKFLMPS 248 (821)
Q Consensus 239 ~~i~~~l~~~ 248 (821)
+.++.+|+.+
T Consensus 327 r~LL~ALGV~ 336 (550)
T PTZ00202 327 RSVVKALGVP 336 (550)
T ss_pred HHHHHHcCCC
Confidence 9999999965
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=4.4e-07 Score=71.22 Aligned_cols=58 Identities=29% Similarity=0.390 Sum_probs=32.1
Q ss_pred CceEEeecCCCCccccHHHHhccccceEEecCCcccccch-hhhccCccCceeecCCcc
Q 045113 542 LLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSIT 599 (821)
Q Consensus 542 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~ 599 (821)
+|++|++++|.+..+|......+++|++|++++|.+..+| ..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555555433325566666666655555553 245556666666666554
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=2.9e-07 Score=91.77 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=48.4
Q ss_pred hhHHhhccCCceeEEEeCCCCCC---cccccccCCCCceEEeecCCCCc----cccHHHHhccccceEEecCCc--cccc
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLN---QYPSEIENLSLLRYLKLNIPSLK----SLPLSFFNYLLNLYTLDMPFS--YIDH 579 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i~~~L~~L~~L~L~~~--~l~~ 579 (821)
....+-..+..++.|||.+|.++ .+..-+.++++|++|+|+.|.+. .+| . .+.+|++|-|.++ .+..
T Consensus 62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~-p~~nl~~lVLNgT~L~w~~ 137 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---L-PLKNLRVLVLNGTGLSWTQ 137 (418)
T ss_pred hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---c-cccceEEEEEcCCCCChhh
Confidence 33444456666667777776665 33334456666666766666543 333 2 4556666666666 2334
Q ss_pred chhhhccCccCceeecCCcc
Q 045113 580 TADEFWKMKKLRHLNFGSIT 599 (821)
Q Consensus 580 lp~~i~~l~~L~~L~L~~~~ 599 (821)
....+..+|+++.|+++.|+
T Consensus 138 ~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhhhcchhhhhhhhccch
Confidence 44445556666666555553
No 56
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=9e-07 Score=93.94 Aligned_cols=82 Identities=12% Similarity=-0.032 Sum_probs=60.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC--CHHHHHHHHHHHhCCc-hh------------HHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC--YADQILDIIIKFLMPS-SR------------LIIL 254 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~-~~------------~~~l 254 (821)
-+..+|+|.+|+||||||+.||++.... +|+.++||.+++.+ .+.++++.|...+-.. .+ .-..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999954433 89999999999988 7888888886322111 01 1111
Q ss_pred HHH--hCCCcEEEEEecCCC
Q 045113 255 HEY--LMTKRYLIVIDDVWS 272 (821)
Q Consensus 255 ~~~--l~~kr~LlVlDdv~~ 272 (821)
.++ -.+++++|++|++..
T Consensus 248 Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHcCCCEEEEEEChHH
Confidence 122 367999999999954
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.26 E-value=3.9e-06 Score=90.63 Aligned_cols=232 Identities=16% Similarity=0.057 Sum_probs=121.6
Q ss_pred CCCeeechhhHHHHHHHHhc---CCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIII 242 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~---~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 242 (821)
-.+|+|++..++.+..++.. .......+.|+|++|+||||||+.+.+ +....|. ++..+. .....-+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~~---~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNIR---ITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCeE---EEeccc-ccChHHHHHHH
Confidence 35699999999999888864 233466788999999999999999998 3433221 122111 11111111222
Q ss_pred HHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCC-------------------CCCCcEEEEEecchhh
Q 045113 243 KFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPD-------------------NQNGSRVLITLAKIDT 301 (821)
Q Consensus 243 ~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~-------------------~~~gs~iiiTtr~~~v 301 (821)
.. + .+.-+|++|++... ...+.+...+.+ ..+.+-|..||+...+
T Consensus 98 ~~-------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l 163 (328)
T PRK00080 98 TN-------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLL 163 (328)
T ss_pred Hh-------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccC
Confidence 21 2 23457777777532 111222111110 0123445666664433
Q ss_pred h-cc---cc----cccCCc-------------CC-CCccchHHHHHHHcCCchHHHHHhhccccccc--------chhcc
Q 045113 302 V-TL---FQ----FENGQN-------------IR-LDLVPTGGPLRVTYQGWPFHILYHGSISLEEN--------KREAI 351 (821)
Q Consensus 302 ~-~l---f~----~~~~~~-------------~~-~~~~~~~~~i~~~c~glPLai~~~g~~~~~~~--------~~~~i 351 (821)
. .| |. |..-+. .. .--.+....|++.|+|.|=.+..+....+... ..+-+
T Consensus 164 ~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v 243 (328)
T PRK00080 164 TSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIA 243 (328)
T ss_pred CHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 3 11 11 111000 01 11224578899999999964444442111110 11112
Q ss_pred ccchhHHHHhhhcCChhhHHHHh-hcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHH-HHHhCCceeeee
Q 045113 352 AKPIFLQSVAYCMLPFPLKLCCL-YLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLE-QLINRGFVEVKK 425 (821)
Q Consensus 352 ~~~~~~l~~sy~~L~~~~k~cfl-~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~-~L~~r~ll~~~~ 425 (821)
...+..+...|..|++..+..+. ....|+.+ .+..+.+.... - ...+.++..++ .|++.+|++...
T Consensus 244 ~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g--~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 244 DKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----G--EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----C--CCcchHHHHhhHHHHHcCCcccCC
Confidence 21125566677888888777664 66677766 46665553322 1 12334555566 899999997443
No 58
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.24 E-value=1.7e-05 Score=90.61 Aligned_cols=254 Identities=17% Similarity=0.158 Sum_probs=159.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC-CCHHHHHHHHHHHhCCch-----
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPSS----- 249 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~----- 249 (821)
..++.+.|..+ .+.+.+-|.-++|.|||||+-.... +. ..=..+.|.+.+.+ -+...+...++..+....
T Consensus 24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 34566667665 2489999999999999999998875 11 11235899998775 456777777777776321
Q ss_pred h----------------HHHHHHHhC--CCcEEEEEecCC---CHHHHHHHHHhCCCCCCCcEEEEEecchhhh------
Q 045113 250 R----------------LIILHEYLM--TKRYLIVIDDVW---SIEVWDIIREILPDNQNGSRVLITLAKIDTV------ 302 (821)
Q Consensus 250 ~----------------~~~l~~~l~--~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~------ 302 (821)
+ ...+...+. .++..+||||-- ++.--..+...+.....+-..|||||+.--.
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 1 233333333 368899999963 3322334444444555677899999987444
Q ss_pred ---cccc-------cccCCc--------CCCCccchHHHHHHHcCCchHHHHHhh-ccc---c-c--ccc----hhcccc
Q 045113 303 ---TLFQ-------FENGQN--------IRLDLVPTGGPLRVTYQGWPFHILYHG-SIS---L-E--ENK----REAIAK 353 (821)
Q Consensus 303 ---~lf~-------~~~~~~--------~~~~~~~~~~~i~~~c~glPLai~~~g-~~~---~-~--~~~----~~~i~~ 353 (821)
++++ |..++. ..+--+.-.+.+.+...|.+-|+..++ ... . + +.. .+.+.+
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~d 259 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSD 259 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHH
Confidence 4443 333221 112223346778888888888888777 111 0 1 111 112221
Q ss_pred chhHHHHhhhcCChhhHHHHhhcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhCCceeeeecCCCCCEE
Q 045113 354 PIFLQSVAYCMLPFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTIN 433 (821)
Q Consensus 354 ~~~~l~~sy~~L~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~ 433 (821)
-...--++.||+++|.-.+-||+++.= -++|+..- +-++.|...+++|.++++|-..-.+ ...
T Consensus 260 --YL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L--------tg~~ng~amLe~L~~~gLFl~~Ldd---~~~ 322 (894)
T COG2909 260 --YLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL--------TGEENGQAMLEELERRGLFLQRLDD---EGQ 322 (894)
T ss_pred --HHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH--------hcCCcHHHHHHHHHhCCCceeeecC---CCc
Confidence 233445688999999998889987531 12333322 3456688899999999988643322 225
Q ss_pred EEEeCcchHHHHHHhcc
Q 045113 434 TCSIRSRCWPSLLVVTL 450 (821)
Q Consensus 434 ~~~mHdlv~dla~~~~~ 450 (821)
.|+.|.++.|+...-..
T Consensus 323 WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 323 WFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred eeehhHHHHHHHHhhhc
Confidence 79999999999876665
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.1e-06 Score=69.02 Aligned_cols=60 Identities=33% Similarity=0.414 Sum_probs=46.4
Q ss_pred CceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCccc
Q 045113 518 KLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYI 577 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 577 (821)
++|++|++++|.++.+| ..+..+++|++|++++|.+..+|+.....+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888888777 4677788888888888888877764433888888888888753
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=4.5e-07 Score=90.44 Aligned_cols=84 Identities=15% Similarity=0.237 Sum_probs=53.1
Q ss_pred CCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceee--ccccccccceeEEeecCCCCCCcc------cc
Q 045113 710 KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM--GTGAMPKLECLIINPCAYLKKMPE------QL 781 (821)
Q Consensus 710 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~~L~i~~c~~l~~lp~------~l 781 (821)
.+|++..+.+..|.+....-..++..||.+-.|.|..+ ++.+|.. .+..||+|..|.+.++|....+-. .+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 35677777776665554444444566777777777764 5666632 456788888888888876654321 35
Q ss_pred CCCCCCCEEEEeC
Q 045113 782 WCIKSLNNFNCWW 794 (821)
Q Consensus 782 ~~l~~L~~L~l~~ 794 (821)
+.+++++.|+=+.
T Consensus 276 aRL~~v~vLNGsk 288 (418)
T KOG2982|consen 276 ARLTKVQVLNGSK 288 (418)
T ss_pred eeccceEEecCcc
Confidence 6677777776443
No 61
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=6.6e-06 Score=75.95 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccc-----cceeEEEEcCCCCCHHHHHHHHHHHhCCchh--------HHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHY-----FDCHAWVQEPYTCYADQILDIIIKFLMPSSR--------LIILHE 256 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--------~~~l~~ 256 (821)
-+++.|+|.+|+|||++++.+.++ .... -..++|+.+....+...+...|+.+++.... ...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 468999999999999999999983 3221 3456799998888999999999999987632 456666
Q ss_pred HhCCC-cEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 257 YLMTK-RYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 257 ~l~~k-r~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.+... ..+||+|++..- ..++.+..... ..+.+||+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66544 469999999543 34556655444 556777776554
No 62
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=6.2e-06 Score=96.63 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=89.3
Q ss_pred CceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC-cccccccCCCCceEEeecCCCCc-cccHHHHhccccce
Q 045113 491 HLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN-QYPSEIENLSLLRYLKLNIPSLK-SLPLSFFNYLLNLY 568 (821)
Q Consensus 491 ~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~ 568 (821)
.++.|.+.++.... ..+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++ +|++|+
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLR 493 (623)
T ss_pred EEEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCC
Confidence 37778777766542 44566889999999999999997 89999999999999999999988 8999999 999999
Q ss_pred EEecCCcccc-cchhhhccC-ccCceeecCCcccCC
Q 045113 569 TLDMPFSYID-HTADEFWKM-KKLRHLNFGSITLPA 602 (821)
Q Consensus 569 ~L~L~~~~l~-~lp~~i~~l-~~L~~L~L~~~~~~~ 602 (821)
+|+|++|.+. .+|..+..+ .++..+++.+|....
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 9999999665 778888764 467788888876533
No 63
>PF13173 AAA_14: AAA domain
Probab=98.10 E-value=7.3e-06 Score=75.29 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=67.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
-+++.|.|+.|+|||||++.++++.. .-..++++.............++ .+.+.+....++.+|+||+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~iDE 69 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDL---------LEYFLELIKPGKKYIFIDE 69 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhh---------HHHHHHhhccCCcEEEEeh
Confidence 46899999999999999999987422 33456666655443211111000 1223333344788999999
Q ss_pred CCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 270 VWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 270 v~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
+....+|......+-+..+..+|++|+......
T Consensus 70 iq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 70 IQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred hhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 988878887777776655678999998866554
No 64
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.01 E-value=4.6e-06 Score=82.11 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=33.7
Q ss_pred CeeechhhHHHHHHHHhc-CCCCceEEEEEcCCCChHHHHHHHHhcCcccccc
Q 045113 168 DTVGLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY 219 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~-~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~ 219 (821)
+||||+++++++...|.. .....+.+.|+|.+|+|||+|+++++. +....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 489999999999999942 234579999999999999999999998 44443
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00012 Score=78.63 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=83.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC----cccccccceeEEEE-cCCCCCHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG----NYVKHYFDCHAWVQ-EPYTCYADQILDII 241 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~-~s~~~~~~~~~~~i 241 (821)
.+++|-+..++.+...+..+. -..++-++|..|+||||+|+.+++. .....|.|...|.. -++..+++++. ++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HH
Confidence 358898888999999987653 2457789999999999999888862 12345677766665 33444555533 23
Q ss_pred HHHhCCchhHHHHHHHhCCCcEEEEEecC--CCHHHHHHHHHhCCCCCCCcEEEEEecchhh
Q 045113 242 IKFLMPSSRLIILHEYLMTKRYLIVIDDV--WSIEVWDIIREILPDNQNGSRVLITLAKIDT 301 (821)
Q Consensus 242 ~~~l~~~~~~~~l~~~l~~kr~LlVlDdv--~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v 301 (821)
.+.+... -..+++-++|+|++ ++...++.+...+.....++.+|++|.+.+.
T Consensus 82 ~~~~~~~--------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ 135 (313)
T PRK05564 82 IEEVNKK--------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQ 135 (313)
T ss_pred HHHHhcC--------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 3322211 11234445555555 5667899999999988889999988876543
No 66
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.99 E-value=1.8e-05 Score=84.76 Aligned_cols=82 Identities=9% Similarity=-0.063 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC--CCHHHHHHHH-----HHHhCCchh---------HHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT--CYADQILDII-----IKFLMPSSR---------LII 253 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~---------~~~ 253 (821)
-+.++|+|.+|+|||||++.+++.... ++|+..+||.+++. .++.++++.+ +..+..+.. ...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 568999999999999999999995332 37999999999866 7899999999 333333321 111
Q ss_pred HHHH-hCCCcEEEEEecCCC
Q 045113 254 LHEY-LMTKRYLIVIDDVWS 272 (821)
Q Consensus 254 l~~~-l~~kr~LlVlDdv~~ 272 (821)
.... -.+++++|++|.+..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 1122 258999999999954
No 67
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=1.2e-06 Score=97.89 Aligned_cols=242 Identities=24% Similarity=0.247 Sum_probs=110.5
Q ss_pred cCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeec
Q 045113 516 MYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNF 595 (821)
Q Consensus 516 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L 595 (821)
.+..+..+.+..+.+...-..++.+++|.+|++.+|.|..+...+. .+++|++|++++|.|..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchh-hhhcchheeccccccccccc-hhhccchhhhee
Confidence 3344444445555554433445555566666666665555543344 55666666666665555532 444555666666
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccCCcchhhh--cCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYPCCCTKDL--LGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
++|.+.. + .++..+++|+.+++.++.....+. +..+.+|+.+.+.++...... .+..+..+..+++..|
T Consensus 148 ~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n--- 218 (414)
T KOG0531|consen 148 SGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDN--- 218 (414)
T ss_pred ccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc----chHHHHHHHHhhcccc---
Confidence 6655522 1 223335555555555532111110 244555666666555311110 1111111111122211
Q ss_pred CCCCeeEecccCCCCC--cceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcc
Q 045113 674 PRLSKIILAEYVFPHS--LTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLE 751 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 751 (821)
.+.. +.++..+.. |+.++++++.+.. .+..+..++.+..|++..|.+.... ....++.+..+...+++...
T Consensus 219 -~i~~--~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 219 -KISK--LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred -ccee--ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc---cccccchHHHhccCcchhcc
Confidence 1111 111122222 6677777776532 2245566667777777655544322 12334445555555443221
Q ss_pred ce---ee-ccccccccceeEEeecCCCC
Q 045113 752 EW---TM-GTGAMPKLECLIINPCAYLK 775 (821)
Q Consensus 752 ~~---~~-~~~~l~~L~~L~i~~c~~l~ 775 (821)
.+ .. .....+.++.+.+..++.-.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 292 SEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhhhhccccccccccccccccccCcccc
Confidence 11 11 13456666666666665433
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=9.9e-07 Score=78.16 Aligned_cols=104 Identities=23% Similarity=0.199 Sum_probs=80.8
Q ss_pred CCceeEEEeCCCCCCccc---ccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCcee
Q 045113 517 YKLLRVLDLGSLVLNQYP---SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHL 593 (821)
Q Consensus 517 ~~~Lr~L~L~~~~l~~lp---~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 593 (821)
-+.+..|||++|++..++ ..+....+|...+|++|.+..+|+.+..+.+.+++|++++|.+..+|..+..++.|+.|
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 345677889999876444 45566778888899999999999888866678999999999999999999999999999
Q ss_pred ecCCcccCCCCCCCcCCCCCcceecccc
Q 045113 594 NFGSITLPAHPGNYCGSLENLNFISALY 621 (821)
Q Consensus 594 ~L~~~~~~~~~p~~i~~l~~L~~L~~~~ 621 (821)
++++|.+ ...|..+..|.+|-.|+...
T Consensus 106 Nl~~N~l-~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 106 NLRFNPL-NAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccccCcc-ccchHHHHHHHhHHHhcCCC
Confidence 9999888 45566565566665555433
No 69
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=8e-06 Score=95.36 Aligned_cols=129 Identities=20% Similarity=0.270 Sum_probs=93.3
Q ss_pred CceeEEEEEcCCCcc---cccC--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCc
Q 045113 469 NVKRFFALEQQSDFA---YLDD--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLL 543 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~---~~~~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~L 543 (821)
.+.+++.+.+..... +... -+|.||+|.+.+.... ...+...+.++++|+.||+++++++.+ ..+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 456666666543221 1111 7899999999887664 234667889999999999999999877 778999999
Q ss_pred eEEeecCCCCcc--ccHHHHhccccceEEecCCcccccchh-------hhccCccCceeecCCcccCC
Q 045113 544 RYLKLNIPSLKS--LPLSFFNYLLNLYTLDMPFSYIDHTAD-------EFWKMKKLRHLNFGSITLPA 602 (821)
Q Consensus 544 r~L~L~~~~i~~--lp~~i~~~L~~L~~L~L~~~~l~~lp~-------~i~~l~~L~~L~L~~~~~~~ 602 (821)
+.|.+++-.+.. --..++ +|++|+.||+|.......+. --..||+||.||.|++.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999998877763 225677 89999999999873322221 11348999999999887654
No 70
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=6.1e-06 Score=96.36 Aligned_cols=109 Identities=22% Similarity=0.162 Sum_probs=86.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC--cccccccCCCCceEEeecCCCCccccHHHHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN--QYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~ 565 (821)
.-.+|+.|.+.|.... ...++......+|.|+.|.+++-.+. .+-.-..++++|++||+|+|+++.+ ..++ +|+
T Consensus 120 sr~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS-~Lk 195 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS-RLK 195 (699)
T ss_pred HHHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh-ccc
Confidence 4568999999886543 24466677788999999999998765 4555567889999999999999988 6888 999
Q ss_pred cceEEecCCcccccc--hhhhccCccCceeecCCccc
Q 045113 566 NLYTLDMPFSYIDHT--ADEFWKMKKLRHLNFGSITL 600 (821)
Q Consensus 566 ~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~L~~~~~ 600 (821)
|||+|.+++-.+..- -..+.+|++|++||+|....
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 999999888766654 34678899999999987665
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.5e-05 Score=57.38 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=22.8
Q ss_pred ceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcccc
Q 045113 519 LLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLP 557 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp 557 (821)
+|++|++++|.++.+|+.+++|++|++|++++|.|+.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655666666666666666665544
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=1.6e-06 Score=96.87 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=64.9
Q ss_pred hccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCcee
Q 045113 514 CEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHL 593 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 593 (821)
+..++.|..|++.++.+..+...+..+++|++|++++|.|..+. .+. .+..|+.|++++|.+..+.. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~-~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLS-TLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chh-hccchhhheeccCcchhccC-Cccchhhhcc
Confidence 45666777777777776666554666777777777777776665 444 56667777777776665533 3446677777
Q ss_pred ecCCcccCCCCC-CCcCCCCCcceeccccC
Q 045113 594 NFGSITLPAHPG-NYCGSLENLNFISALYP 622 (821)
Q Consensus 594 ~L~~~~~~~~~p-~~i~~l~~L~~L~~~~~ 622 (821)
++++|.+...-+ . ...+.+|+.+.+..|
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCC
Confidence 777776633222 1 345556666655553
No 73
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=0.00031 Score=84.68 Aligned_cols=247 Identities=14% Similarity=0.109 Sum_probs=137.7
Q ss_pred CeeechhhHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcC---CCC---CHHHHHHH
Q 045113 168 DTVGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEP---YTC---YADQILDI 240 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s---~~~---~~~~~~~~ 240 (821)
.++||+.+.+.|...+... .+...|+.+.|..|||||+|++.|.. .+.+.+...+--..+ +.. ...+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999988763 44577999999999999999999998 555443222221111 111 13345555
Q ss_pred HHHHhCCchh------------------------------------------------------HHHHHHHh-CCCcEEE
Q 045113 241 IIKFLMPSSR------------------------------------------------------LIILHEYL-MTKRYLI 265 (821)
Q Consensus 241 i~~~l~~~~~------------------------------------------------------~~~l~~~l-~~kr~Ll 265 (821)
++.++....+ ...+.... +.++..+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 5555422100 12222223 3569999
Q ss_pred EEecC-CC-HHHHHHHHHhCCCCC----CCcEEEEEecchhhh----------cccc---cccCC---------cC-CCC
Q 045113 266 VIDDV-WS-IEVWDIIREILPDNQ----NGSRVLITLAKIDTV----------TLFQ---FENGQ---------NI-RLD 316 (821)
Q Consensus 266 VlDdv-~~-~~~~~~l~~~l~~~~----~gs~iiiTtr~~~v~----------~lf~---~~~~~---------~~-~~~ 316 (821)
|+||+ |- ...++-+........ ....|..+....... ..+. +...+ .+ ...
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 99999 63 333433333222111 011232222222111 0011 11110 02 345
Q ss_pred ccchHHHHHHHcCCchHHHHHhh--------------ccccccc----chhccccc-hhHHHHhhhcCChhhHHHHhhcc
Q 045113 317 LVPTGGPLRVTYQGWPFHILYHG--------------SISLEEN----KREAIAKP-IFLQSVAYCMLPFPLKLCCLYLP 377 (821)
Q Consensus 317 ~~~~~~~i~~~c~glPLai~~~g--------------~~~~~~~----~~~~i~~~-~~~l~~sy~~L~~~~k~cfl~~s 377 (821)
..+..+.|+++-.|.|+-+.-+= ...|... ..-...++ ...+..-.+.||...+.-.-.-|
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA 318 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAA 318 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56788999999999998877664 1112211 11111211 14688889999999999888888
Q ss_pred cCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhCCceeee
Q 045113 378 VFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVK 424 (821)
Q Consensus 378 ~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r~ll~~~ 424 (821)
++-.. |+.+.|.-.|-. .....+...++.|....++...
T Consensus 319 ~iG~~--F~l~~La~l~~~------~~~~~a~~l~~al~e~lI~~~~ 357 (849)
T COG3899 319 CIGNR--FDLDTLAALAED------SPALEAAALLDALQEGLILPLS 357 (849)
T ss_pred HhCcc--CCHHHHHHHHhh------chHHHHHHHHHHhHhhceeccc
Confidence 87644 445555554432 2345566666666665555433
No 74
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.77 E-value=0.00017 Score=83.30 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=73.6
Q ss_pred CCCeeechhhHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhcCccc---ccccc--eeEEEEcCCCCCHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYSGNYV---KHYFD--CHAWVQEPYTCYADQI 237 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~~~~ 237 (821)
+..++|||+++++|...|... .....++-|+|.+|.|||+.++.|.+..+- ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 457899999999999998752 333467889999999999999999873211 11122 2566666666678888
Q ss_pred HHHHHHHhCCchh---------HHHHHHHhC---CCcEEEEEecCCC
Q 045113 238 LDIIIKFLMPSSR---------LIILHEYLM---TKRYLIVIDDVWS 272 (821)
Q Consensus 238 ~~~i~~~l~~~~~---------~~~l~~~l~---~kr~LlVlDdv~~ 272 (821)
...|..++..... ...+...+. ....+||||+|+.
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 8888888843311 334444442 2345999999964
No 75
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.3e-05 Score=56.43 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=22.4
Q ss_pred CceEEeecCCCCccccHHHHhccccceEEecCCcccccch
Q 045113 542 LLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTA 581 (821)
Q Consensus 542 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp 581 (821)
+|++|++++|.|..+|+.+. +|++|++|++++|.+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~-~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELS-NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGT-TCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHh-CCCCCCEEEecCCCCCCCc
Confidence 46666666666666665555 6666666666666555443
No 76
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.74 E-value=0.00012 Score=80.00 Aligned_cols=103 Identities=14% Similarity=0.031 Sum_probs=73.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH-h
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF-L 245 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l 245 (821)
..+++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++.++..++...+.-. .
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCC
Confidence 45888999999999999864 377889999999999999999854444578889999999998877766433111 1
Q ss_pred CCc--hh--HHHHHHHhC--CCcEEEEEecCCCH
Q 045113 246 MPS--SR--LIILHEYLM--TKRYLIVIDDVWSI 273 (821)
Q Consensus 246 ~~~--~~--~~~l~~~l~--~kr~LlVlDdv~~~ 273 (821)
+-. .. .+.+.+... ++++++|+|++...
T Consensus 251 gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 100 01 222223222 47899999999653
No 77
>PRK06893 DNA replication initiation factor; Validated
Probab=97.74 E-value=7.4e-05 Score=76.12 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
...+.++|.+|+|||+|++++++ +.......+.|+.++.. ..... .+.+.+. +.-+||+||
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~---~~~~~-------------~~~~~~~-~~dlLilDD 99 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKS---QYFSP-------------AVLENLE-QQDLVCLDD 99 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHh---hhhhH-------------HHHhhcc-cCCEEEEeC
Confidence 45789999999999999999998 44333445677765421 00111 1112222 334999999
Q ss_pred CCCH---HHHH-HHHHhCCC-CCCCcEEEEEecc
Q 045113 270 VWSI---EVWD-IIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 270 v~~~---~~~~-~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
+|.. ..|+ .+...+.. ...|+.+||+|.+
T Consensus 100 i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 100 LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 9863 4565 33333332 2235666555543
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.71 E-value=0.00012 Score=81.78 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCeeechhhHHH---HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHH
Q 045113 167 RDTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIII 242 (821)
Q Consensus 167 ~~~vGr~~~~~~---i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~ 242 (821)
.++||.+..+.. +..++..+. ...+.++|.+|+||||||+.+.+. ....| +.++... ++.++ +.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~i-r~ii 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDL-REVI 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHH-HHHH
Confidence 357888777655 666665544 567888999999999999999983 33333 2222211 22221 2222
Q ss_pred HHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEE
Q 045113 243 KFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLI 294 (821)
Q Consensus 243 ~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii 294 (821)
+... .....+++.+|++|+++.. ...+.+...+.. |..++|
T Consensus 82 ~~~~--------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 82 EEAR--------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred HHHH--------HhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 2111 0112458899999999854 456666665543 455555
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=1.2e-06 Score=97.21 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=22.7
Q ss_pred hhccCCceeEEEeCCCCCC--cccccccCCCCceEEeecCCCCcc
Q 045113 513 ICEMYKLLRVLDLGSLVLN--QYPSEIENLSLLRYLKLNIPSLKS 555 (821)
Q Consensus 513 ~~~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~ 555 (821)
++.-+..+.+|.+-..+-. .-|-.|..+..||.|.|++|.+..
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh
Confidence 3444444555554444321 114456666677777777776654
No 80
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=8.4e-07 Score=98.35 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=52.8
Q ss_pred eeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchh-hhccCccCceeecCCc
Q 045113 520 LRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSI 598 (821)
Q Consensus 520 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~ 598 (821)
|.+.+.++|.+..+-.++.-+++|+.|||++|++.... .+. .|++|++|||++|.+..+|. ....+. |..|++.+|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr-~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLR-RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHH-hcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 34444444444444444444455555555555544443 333 45555555555554444443 111222 455555554
Q ss_pred ccCCCCCCCcCCCCCcceeccccC----CcchhhhcCCCCCCCeEEEecc
Q 045113 599 TLPAHPGNYCGSLENLNFISALYP----CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 599 ~~~~~~p~~i~~l~~L~~L~~~~~----~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
.+.. + .++.+|.+|+.|++++| .....- +..|..|+.|++.+|
T Consensus 243 ~l~t-L-~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 243 ALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGN 289 (1096)
T ss_pred HHHh-h-hhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCC
Confidence 4421 1 23444555555555443 112222 334444555555554
No 81
>PRK08116 hypothetical protein; Validated
Probab=97.65 E-value=0.00027 Score=73.59 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=60.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch--hHHHHHHHhCCCcEEEEEe
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS--RLIILHEYLMTKRYLIVID 268 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~l~~~l~~kr~LlVlD 268 (821)
..+.++|.+|+|||+||.++++ ++..+-..+++++ ..+++..+........ ....+.+.+.+-. |||||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEe
Confidence 4588999999999999999999 4443334556664 4455666655543322 1344555566554 89999
Q ss_pred cCCC--HHHHH--HHHHhCCC-CCCCcEEEEEecc
Q 045113 269 DVWS--IEVWD--IIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 269 dv~~--~~~~~--~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
|+.. ..+|. .+...+.. -..|..+||||..
T Consensus 186 Dlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 186 DLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9942 23443 22222221 2345679999873
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00011 Score=79.19 Aligned_cols=132 Identities=19% Similarity=0.174 Sum_probs=82.5
Q ss_pred hccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCC-CccccHHHHhccccceEEecCCc-ccccchhhhccCccCc
Q 045113 514 CEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPS-LKSLPLSFFNYLLNLYTLDMPFS-YIDHTADEFWKMKKLR 591 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~ 591 (821)
+..+++++.|++++|.++.+|. + ..+|+.|.+++|. +..+|..+. .+|+.|++++| .+..+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh---hhhhheEccCcccccccccc------cc
Confidence 4557899999999999888883 2 2469999998864 678886554 58999999999 88888764 56
Q ss_pred eeecCCccc--CCCCCCCcCCCCCcceecccc-CCcchhhhcC-CC-CCCCeEEEecccccchhHHHHHccCCCCcCEEE
Q 045113 592 HLNFGSITL--PAHPGNYCGSLENLNFISALY-PCCCTKDLLG-RL-PNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLK 666 (821)
Q Consensus 592 ~L~L~~~~~--~~~~p~~i~~l~~L~~L~~~~-~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~ 666 (821)
+|++..+.. .+.+|. +|+.|.+.. +...... +. .+ ++|+.|.+++|.. . .+|..+. .+|+.|.
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~-lp~~LPsSLk~L~Is~c~~--i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQAR-IDNLISPSLKTLSLTGCSN--I-ILPEKLP--ESLQSIT 183 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccc-cccccCCcccEEEecCCCc--c-cCccccc--ccCcEEE
Confidence 666655443 234444 355555432 1111111 11 12 4688888888731 1 1222221 4677777
Q ss_pred eec
Q 045113 667 LAN 669 (821)
Q Consensus 667 l~~ 669 (821)
++.
T Consensus 184 ls~ 186 (426)
T PRK15386 184 LHI 186 (426)
T ss_pred ecc
Confidence 753
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.61 E-value=0.00018 Score=83.82 Aligned_cols=132 Identities=16% Similarity=0.075 Sum_probs=83.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEcCCC---CCHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF---DCHAWVQEPYT---CYADQILDI 240 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~~~~~~~~~ 240 (821)
+.++|++..++.+...+.... ...+.|+|.+|+||||+|+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 468999999999988875443 5679999999999999999998754333332 12345544321 122222111
Q ss_pred H---------------HHHhCC-------------c----h--------hHHHHHHHhCCCcEEEEEecCCCH--HHHHH
Q 045113 241 I---------------IKFLMP-------------S----S--------RLIILHEYLMTKRYLIVIDDVWSI--EVWDI 278 (821)
Q Consensus 241 i---------------~~~l~~-------------~----~--------~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~ 278 (821)
+ +...+. . + .+..+.+.+.++++.++-|+.|.. ..|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1 111110 0 0 067888888889999887777654 45888
Q ss_pred HHHhCCCCCCCcEEEE--Eecchh
Q 045113 279 IREILPDNQNGSRVLI--TLAKID 300 (821)
Q Consensus 279 l~~~l~~~~~gs~iii--Ttr~~~ 300 (821)
+...+....+...|+| ||++..
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred hhhhcccCccceEEEEEecccccc
Confidence 8777776666655666 566443
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.00052 Score=79.01 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=78.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-------------------ccccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-------------------KHYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~ 227 (821)
.++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+.-.- .+.|..++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 469999999999999987653 2446679999999999999877652110 11233345554
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecchhh
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKIDT 301 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~~v 301 (821)
.+....++++- ++++.+. ..-..++.-++|||++... ..|+.+...+.......++|+||.+..-
T Consensus 95 Aas~rgVDdIR-eLIe~a~--------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 95 AASNRGVDEMA-ALLERAV--------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred ccccccHHHHH-HHHHHHH--------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 44433333322 2222111 0112345568899999754 5688888877766667887777776543
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=1.8e-05 Score=70.30 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=49.2
Q ss_pred hhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhh
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADE 583 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~ 583 (821)
+++++-.+++.++.|+|++|.+..+|..+..++.||.|+++.|.+...|.-+. .|.+|-+|+..++.+.++|-.
T Consensus 68 fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH-HHHhHHHhcCCCCccccCcHH
Confidence 45555566666666777777666666666666677777777776666666666 566666666666666666554
No 86
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00034 Score=73.72 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKF 244 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~ 244 (821)
...++|-+..+.++ +..+. +.-.-.||++|+||||||+.+.. .....|. .+|-.. ++.++. .+++.
T Consensus 29 Q~HLlg~~~~lrr~---v~~~~--l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr-~i~e~ 95 (436)
T COG2256 29 QEHLLGEGKPLRRA---VEAGH--LHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLR-EIIEE 95 (436)
T ss_pred hHhhhCCCchHHHH---HhcCC--CceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHH-HHHHH
Confidence 34445544444443 33333 66777899999999999999998 4555553 233322 223222 22211
Q ss_pred hCCchhHHHHHHHhCCCcEEEEEecCC--CHHHHHHHHHhCCCCCCCcEEEEE--ecchhhh---------cccccccCC
Q 045113 245 LMPSSRLIILHEYLMTKRYLIVIDDVW--SIEVWDIIREILPDNQNGSRVLIT--LAKIDTV---------TLFQFENGQ 311 (821)
Q Consensus 245 l~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iiiT--tr~~~v~---------~lf~~~~~~ 311 (821)
.-+....++|.+|.+|.|- +..+-+.+.+ .-.+|.-|+|- |-++.-. .+|.|..-
T Consensus 96 --------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L- 163 (436)
T COG2256 96 --------ARKNRLLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRARVFELKPL- 163 (436)
T ss_pred --------HHHHHhcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecC-
Confidence 1122334899999999995 3445555544 44567777774 4443222 44443322
Q ss_pred cCCCCccchHHH-HHHHcCCch
Q 045113 312 NIRLDLVPTGGP-LRVTYQGWP 332 (821)
Q Consensus 312 ~~~~~~~~~~~~-i~~~c~glP 332 (821)
...++..+.++ +..+..|++
T Consensus 164 -~~~di~~~l~ra~~~~~rgl~ 184 (436)
T COG2256 164 -SSEDIKKLLKRALLDEERGLG 184 (436)
T ss_pred -CHHHHHHHHHHHHhhhhcCCC
Confidence 23344444444 566677776
No 87
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00029 Score=76.32 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=80.3
Q ss_pred CCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCcccccccc-e-eEEEEcCCCCCHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD-C-HAWVQEPYTCYADQILDIII 242 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~wv~~s~~~~~~~~~~~i~ 242 (821)
..+.+||++++++...|... .....-+-|+|.+|.|||+.++.+.+ ++..... . ++.|.+-...+..++...|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34999999999999888752 22233388999999999999999998 5544432 1 68888888889999999999
Q ss_pred HHhCCchh--------HHHHHHHhC--CCcEEEEEecCCCH
Q 045113 243 KFLMPSSR--------LIILHEYLM--TKRYLIVIDDVWSI 273 (821)
Q Consensus 243 ~~l~~~~~--------~~~l~~~l~--~kr~LlVlDdv~~~ 273 (821)
.+++.... ...+.+.+. ++.+++|||+++..
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 98864321 556666664 58999999999743
No 88
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.55 E-value=0.00014 Score=74.26 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=62.1
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhH
Q 045113 172 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL 251 (821)
Q Consensus 172 r~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 251 (821)
.+..++.+..++... ....|.|+|.+|+||||||+.+++. ........++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH----------
Confidence 455666777665433 3678999999999999999999983 333334455665433211 00
Q ss_pred HHHHHHhCCCcEEEEEecCCCHH---HH-HHHHHhCCC-CCCCcEEEEEecch
Q 045113 252 IILHEYLMTKRYLIVIDDVWSIE---VW-DIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 252 ~~l~~~l~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
..+...+.+. -+||+||+.... .| +.+...+.. ...+.+||+||+..
T Consensus 82 ~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 82 PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 0111222232 389999997532 33 334443332 12345788988753
No 89
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.51 E-value=0.00036 Score=76.61 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=42.1
Q ss_pred CCCCCeeechhhHHHHHHHHhcC--C---------CCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEG--P---------PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~--~---------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
....++.|++..+++|.+.+... . ...+-+.++|.+|+|||++|+++++ +....|
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 34457999999999999887532 1 2245688999999999999999998 444444
No 90
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.51 E-value=0.00015 Score=71.35 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=36.5
Q ss_pred CCCeeechhhHHHHHHHHhc---CCCCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 166 NRDTVGLDDRMEELLDLLIE---GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~---~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
-.+|||.+.-++++.-++.. ..+.+.-+-.||++|+||||||.-+.+ +....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 45799999888886555542 344578889999999999999999999 566556
No 91
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.50 E-value=0.00046 Score=75.15 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=37.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|++..++.+..++..+. ...+-++|.+|+||||+|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 468899999999998887654 45678999999999999999887
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.44 E-value=0.00048 Score=81.11 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCeeechhhHH---HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHH
Q 045113 167 RDTVGLDDRME---ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 167 ~~~vGr~~~~~---~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
.+++|.+..+. .+...+..+. ...+.++|++|+||||||+.+++ .....|. .+..+. ..+.++ ++++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~di-r~~i- 97 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVKDL-RAEV- 97 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhHHH-HHHH-
Confidence 46889888774 3455555443 56778999999999999999998 4444441 111110 111111 1111
Q ss_pred HhCCchhHHHHHHHh--CCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEE
Q 045113 244 FLMPSSRLIILHEYL--MTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLIT 295 (821)
Q Consensus 244 ~l~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiT 295 (821)
....+.+ .+++.+||+||++. ...++.+...+. .|+.++|+
T Consensus 98 --------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~ 142 (725)
T PRK13341 98 --------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIG 142 (725)
T ss_pred --------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEE
Confidence 1111122 24678999999964 456666665543 35556654
No 93
>PRK04195 replication factor C large subunit; Provisional
Probab=97.43 E-value=0.00062 Score=77.54 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=71.9
Q ss_pred CCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.+++|.+..++++.+|+..- ....+.+-|+|.+|+||||+|+.+++. .. |+ .+-+..+...+...+ ..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~~i-~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTADVI-ERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHHHH-HHHHHH
Confidence 46999999999999998752 222678999999999999999999983 32 32 233344543333322 222222
Q ss_pred hCCchhHHHHHHHhCCCcEEEEEecCCCH------HHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 245 LMPSSRLIILHEYLMTKRYLIVIDDVWSI------EVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 245 l~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.... ......++-+||+|+++.. ..+..+...+.. .+..||+|+.+
T Consensus 88 ~~~~------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 88 AATS------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred hhcc------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 1110 0111136789999999753 235555555542 23456666643
No 94
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0011 Score=75.44 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=75.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcc----c---------------ccccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNY----V---------------KHYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~----~---------------~~~F~~~~wv~ 227 (821)
.+++|-+..++.+...+..+. -...+-++|..|+||||+|+.+.+.-. . .+.|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468999999999998887653 235677899999999999999876210 0 11233444454
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEec
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
......++++ ++|++.+.. .-..+++-++|+|++.. ...++.+...+......+++|++|.
T Consensus 95 aas~~gvd~i-r~ii~~~~~--------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 95 AASRTGVEET-KEILDNIQY--------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred cccccCHHHH-HHHHHHHHh--------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 4333444332 222222110 11235667999999964 3568888888877666666665443
No 95
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.40 E-value=0.0007 Score=70.78 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=79.3
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCC-ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQ-LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~-~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
.++.+.+|+..+..+..++...+.. ...|-|+|-.|.|||.+.+.+++.. .. ..+|+++-..|+...+++.|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHH
Confidence 3567889999999999988876653 4556899999999999999999843 22 3589999999999999999999
Q ss_pred HhC-Cchh--------------HHHHHH--HhC--CCcEEEEEecCCCH
Q 045113 244 FLM-PSSR--------------LIILHE--YLM--TKRYLIVIDDVWSI 273 (821)
Q Consensus 244 ~l~-~~~~--------------~~~l~~--~l~--~kr~LlVlDdv~~~ 273 (821)
+.. .+++ ...+.+ ... ++.++||||+++.-
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence 995 2221 222222 111 46899999999754
No 96
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0015 Score=73.42 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCCCeeechhhHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
-+.+-+|+++-+++|++++.-+ ..+-++++.+|++|||||.+|+.|.. .....|- -++|..-.++.+|-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhccc
Confidence 3567899999999999999653 44678999999999999999999997 4544442 2344554444443211
Q ss_pred HHHHhCCchhHHHHHHHh---CCCcEEEEEecCCC
Q 045113 241 IIKFLMPSSRLIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 241 i~~~l~~~~~~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
=..-++.. -.++-+.| +..+=|+.+|.|+.
T Consensus 484 RRTYVGAM--PGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 RRTYVGAM--PGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred ceeeeccC--ChHHHHHHHhhCCCCceEEeehhhh
Confidence 11111111 12333333 45777999999964
No 97
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0015 Score=71.44 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc-------------------cccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-------------------HYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 227 (821)
.+++|.+..++.+...+..+. -...+-++|..|+||||+|+.+.+.-.-. +.+....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 468999999999998887653 24577899999999999999988631100 0111223333
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
.+....+.+ .+++.+.+.. .-..+++-++|+|++... ..++.+...+.......++|++|.+.
T Consensus 95 ~~~~~~v~~-ir~i~~~~~~--------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 95 AASRTKVEE-MREILDNIYY--------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred ccccCCHHH-HHHHHHHHhc--------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 222222222 1222222110 001245569999999754 45778877777666677777776543
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.39 E-value=0.0011 Score=71.53 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=73.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFL 245 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 245 (821)
-.+++|.+...+.+..++..+. -..++-++|.+|+||||+|+.+++. .... ...+..+. .....+...+....
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~i~~~l~~~~ 92 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDFVRNRLTRFA 92 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHHHHHHHHHHH
Confidence 3578999999999999987643 3467777999999999999999883 3222 23444444 22222222111110
Q ss_pred CCchhHHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 246 MPSSRLIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 246 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
. -. .+.+.+-++|+||+... ...+.+...+.....+.++|+||....
T Consensus 93 ~-------~~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 93 S-------TV-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred H-------hh-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 0 00 01234568999999643 233444444554456788998887543
No 99
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.38 E-value=3.9e-05 Score=87.93 Aligned_cols=263 Identities=21% Similarity=0.110 Sum_probs=136.5
Q ss_pred ccCCceeEEEeCCCCC--C-ccc-ccccCCCCceEEeecCCC-Ccc--ccHHHHhccccceEEecCCc--ccccch----
Q 045113 515 EMYKLLRVLDLGSLVL--N-QYP-SEIENLSLLRYLKLNIPS-LKS--LPLSFFNYLLNLYTLDMPFS--YIDHTA---- 581 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l--~-~lp-~~i~~l~~Lr~L~L~~~~-i~~--lp~~i~~~L~~L~~L~L~~~--~l~~lp---- 581 (821)
..+..++.+.+..+.. . ... .-...++.|+.|.+.++. +.. +-.... .+++|+.|++++| .+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 236 (482)
T KOG1947|consen 158 RGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALAL-KCPNLEELDLSGCCLLITLSPLLLL 236 (482)
T ss_pred HHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHh-hCchhheecccCcccccccchhHhh
Confidence 3344555555554432 1 111 112347888888888874 443 434455 8899999999873 222222
Q ss_pred hhhccCccCceeecCCcc-cCCCCCCCc-CCCCCcceecccc-C---CcchhhhcCCCCCCCeEEEecccccchhHHHHH
Q 045113 582 DEFWKMKKLRHLNFGSIT-LPAHPGNYC-GSLENLNFISALY-P---CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKS 655 (821)
Q Consensus 582 ~~i~~l~~L~~L~L~~~~-~~~~~p~~i-~~l~~L~~L~~~~-~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~ 655 (821)
.....+++|++|+++++. ++...-..+ ..+++|++|.+.. . ...+..+...+++|++|+++.|.......+...
T Consensus 237 ~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 237 LLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 233457889999998877 322111112 1256677766332 1 233333355667777777777753333334444
Q ss_pred ccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCC---CCcccccCCCCCCEEEEeccccCCCeeeec
Q 045113 656 LCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMD---DPMPALEKLPLLQVLKLKQNSYSGRKLTCG 732 (821)
Q Consensus 656 l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 732 (821)
..++++|+.|.+. +...+..++.+.+..+.... ...-.+..+++|+.+.|.++.......
T Consensus 317 ~~~c~~l~~l~~~--------------~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 379 (482)
T KOG1947|consen 317 LKNCPNLRELKLL--------------SLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--- 379 (482)
T ss_pred HHhCcchhhhhhh--------------hcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch---
Confidence 4445555544433 23335556666665554221 112234577888888887655222211
Q ss_pred CCCCcccceeeeccCCCc-cceeeccccccccceeEEeecCCCCCCcc-ccCC-CCCCCEEEEeCCcHHHHHHH
Q 045113 733 SDGFPRLKVLHLKSMLWL-EEWTMGTGAMPKLECLIINPCAYLKKMPE-QLWC-IKSLNNFNCWWPQPELRQKL 803 (821)
Q Consensus 733 ~~~~~~L~~L~L~~~~~l-~~~~~~~~~l~~L~~L~i~~c~~l~~lp~-~l~~-l~~L~~L~l~~c~~~~~~~~ 803 (821)
.+.+.+|+.+ ..+......++.|+.|.+..|...+.--. .... +.++..+++.+|+.......
T Consensus 380 --------~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 380 --------ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred --------HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 3333444433 22222222333377888888775542110 1111 66777777777774443333
No 100
>PLN03025 replication factor C subunit; Provisional
Probab=97.38 E-value=0.00087 Score=72.12 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=70.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-ccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-KHYFD-CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.+++|.++.++.+..++..+. ..-+-++|.+|+||||+|+.+.+ +. ...|. .++-+..+...+...+. ++++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~~vr-~~i~~ 87 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGIDVVR-NKIKM 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHHHHH-HHHHH
Confidence 468898888888887776544 44577999999999999999887 33 22232 22223334333333222 22211
Q ss_pred hCCchhHHHHHHHh-CCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 245 LMPSSRLIILHEYL-MTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 245 l~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.... ...+ .++.-++++|++... ...+.+...+......+++|+++..
T Consensus 88 ~~~~------~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 88 FAQK------KVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHhc------cccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 1000 0001 245679999999753 4455665555544456777777654
No 101
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.38 E-value=0.001 Score=73.48 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=38.9
Q ss_pred CCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...++.|++..++++.+.+..+ -...+-|-++|.+|+|||++|+++++
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 3457899999999998877431 12356788999999999999999998
No 102
>PRK12377 putative replication protein; Provisional
Probab=97.37 E-value=0.00076 Score=68.92 Aligned_cols=99 Identities=13% Similarity=0.036 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
...+.++|.+|+|||+||.++.+ ........++++++. ++...|-...........+.+.+ .+-=||||||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~~~~~~~l~~l-~~~dLLiIDD 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNGQSGEKFLQEL-CKVDLLVLDE 171 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhccchHHHHHHHh-cCCCEEEEcC
Confidence 46789999999999999999999 454444456776543 44444444332221122333333 3556999999
Q ss_pred CCCH--HHH--HHHHHhCCC-CCCCcEEEEEec
Q 045113 270 VWSI--EVW--DIIREILPD-NQNGSRVLITLA 297 (821)
Q Consensus 270 v~~~--~~~--~~l~~~l~~-~~~gs~iiiTtr 297 (821)
+... ..| +.+...+.. -.+.--+||||.
T Consensus 172 lg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 172 IGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9432 233 233333321 112234677876
No 103
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0011 Score=77.91 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=77.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc-------------------cccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-------------------HYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 227 (821)
.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.-. ..|..++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 469999999999999887653 23456899999999999999998731111 1122234443
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
.+....+..+ ++|.+.+. .....+++-++|||++.. ...++.+...+.......++|++|.+.
T Consensus 95 Aas~~kVDdI-ReLie~v~--------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 95 AASRTKVDDT-RELLDNVQ--------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred cccccCHHHH-HHHHHHHH--------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 3322333332 33333221 112246778999999964 467888888887666567766655543
No 104
>PRK08727 hypothetical protein; Validated
Probab=97.37 E-value=0.00067 Score=69.27 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
...+.|+|..|+|||+|++++++ +.......++++++.+ ....+. ...+.+ .+.-+||+||
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~------~~~~~~----------~~~~~l-~~~dlLiIDD 101 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA------AAGRLR----------DALEAL-EGRSLVALDG 101 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH------hhhhHH----------HHHHHH-hcCCEEEEeC
Confidence 45699999999999999999988 4444344566775432 111111 111122 1335899999
Q ss_pred CCCH---HHHH-HHHHhCCC-CCCCcEEEEEecc
Q 045113 270 VWSI---EVWD-IIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 270 v~~~---~~~~-~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
+... ..|. .+...+.. ..+|..||+|++.
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred cccccCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 9632 2333 22222221 2246679999984
No 105
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.37 E-value=0.00079 Score=72.77 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=45.6
Q ss_pred ccCCCCceEEeecCCCCccccHHHHhccccceEEecCCc-ccccchhhhccCccCceeecCCcccCCCCCC
Q 045113 537 IENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFS-YIDHTADEFWKMKKLRHLNFGSITLPAHPGN 606 (821)
Q Consensus 537 i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~ 606 (821)
+..+.++++|++++|.+..+| . -..+|++|.+++| .+..+|..+ .++|++|++++|.....+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-V---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-C---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 445678889999998888888 2 2346888999887 677777655 35788888888743344443
No 106
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.36 E-value=0.0008 Score=69.54 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=68.1
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHH
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
+....++|-+.-+..+ +.. +.+.-+.+||.+|+||||||+.+.+..+-.. .-||..|-.-.-..-.++|++
T Consensus 141 vGQ~hlv~q~gllrs~---ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 141 VGQSHLVGQDGLLRSL---IEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred cchhhhcCcchHHHHH---HHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 3344555554433332 223 3477888999999999999999998544333 346666554332222333333
Q ss_pred HhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEE--Eecch
Q 045113 244 FLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLI--TLAKI 299 (821)
Q Consensus 244 ~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii--Ttr~~ 299 (821)
+- + =...+.++|..|.+|.|-. ..+-+ ..+|.-.+|+-++| ||.+.
T Consensus 212 ~a------q-~~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 212 QA------Q-NEKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENP 261 (554)
T ss_pred HH------H-HHHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCC
Confidence 21 1 1233457889999999943 22332 34566667777666 44443
No 107
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.35 E-value=0.00037 Score=73.96 Aligned_cols=226 Identities=17% Similarity=0.107 Sum_probs=139.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEcCCCCCHHHHHHHHHHHhCCch-----hHHHHHHHhCCCc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDC-HAWVQEPYTCYADQILDIIIKFLMPSS-----RLIILHEYLMTKR 262 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~l~~~l~~kr 262 (821)
..+-+.++|.|||||||++-.+.. +..-|.. +.+|....--+...+.-.....+.... ....+.....++|
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 478999999999999999988886 6667765 444544443444444444444454442 1567888889999
Q ss_pred EEEEEecCCCHH-HHHHHHHhCCCCCCCcEEEEEecchhhh------------------cccc---cccCCc--CCCCcc
Q 045113 263 YLIVIDDVWSIE-VWDIIREILPDNQNGSRVLITLAKIDTV------------------TLFQ---FENGQN--IRLDLV 318 (821)
Q Consensus 263 ~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~iiiTtr~~~v~------------------~lf~---~~~~~~--~~~~~~ 318 (821)
.++|+||...-. .-..+...+-.+...-.|+.|+|..-.. ++|. -..... ....-.
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~ 169 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNA 169 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCch
Confidence 999999995432 2223333444455566788888876444 3332 000000 223345
Q ss_pred chHHHHHHHcCCchHHHHHhhcc-------------------ccc---cc--chhccccchhHHHHhhhcCChhhHHHHh
Q 045113 319 PTGGPLRVTYQGWPFHILYHGSI-------------------SLE---EN--KREAIAKPIFLQSVAYCMLPFPLKLCCL 374 (821)
Q Consensus 319 ~~~~~i~~~c~glPLai~~~g~~-------------------~~~---~~--~~~~i~~~~~~l~~sy~~L~~~~k~cfl 374 (821)
..+.+|.+...|.|++|...++. .++ +. .....+ ..+.+||.-|....+--|-
T Consensus 170 a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~---asl~ws~~lLtgwe~~~~~ 246 (414)
T COG3903 170 AAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLR---ASLDWSYALLTGWERALFG 246 (414)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhcc---chhhhhhHhhhhHHHHHhc
Confidence 66889999999999999988711 000 00 344566 8999999999999888888
Q ss_pred hcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhCCceeee
Q 045113 375 YLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVK 424 (821)
Q Consensus 375 ~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r~ll~~~ 424 (821)
-++.|...+... ...|.+-|=......-....-+-.+++.+++...
T Consensus 247 rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 247 RLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred chhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 888888776543 2344444432100111122234455666655443
No 108
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=9.9e-05 Score=73.17 Aligned_cols=241 Identities=17% Similarity=0.110 Sum_probs=128.1
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC----ccc-------ccccCCCCceEEeecCCCCc-c
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN----QYP-------SEIENLSLLRYLKLNIPSLK-S 555 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~----~lp-------~~i~~l~~Lr~L~L~~~~i~-~ 555 (821)
....+..+.++|+.........+...+.+-++|++.+++.-... .+| +.+-+|++|+..+||.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35566777888887764344455666777788888888765422 233 34567888899999888776 4
Q ss_pred ccHH----HHhccccceEEecCCcccccchh-h-------------hccCccCceeecCCcccCCCCCCCcCCCCCccee
Q 045113 556 LPLS----FFNYLLNLYTLDMPFSYIDHTAD-E-------------FWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFI 617 (821)
Q Consensus 556 lp~~----i~~~L~~L~~L~L~~~~l~~lp~-~-------------i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L 617 (821)
.|+. |. +-+.|..|.+++|.+..+.. . ..+-|.|+...+..|.+.. .|...
T Consensus 108 ~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~--------- 176 (388)
T COG5238 108 FPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKEL--------- 176 (388)
T ss_pred cchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHH---------
Confidence 4433 44 56788889888887765522 1 2334567777666665521 11100
Q ss_pred ccccCCcchhhhcCCCCCCCeEEEecccccc---hhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecc-cCCCCCcceE
Q 045113 618 SALYPCCCTKDLLGRLPNLRNLRIQGDLSYN---QSLLSKSLCRLSCLESLKLANESKMPRLSKIILAE-YVFPHSLTHL 693 (821)
Q Consensus 618 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~-~~~~~~L~~L 693 (821)
....+..-.+|+.+.+..|.... ..-+...+..+++|+.|+|..|. ....-+.++.. +...+.|+.|
T Consensus 177 --------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 177 --------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred --------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhc
Confidence 00001112334444444332100 11111222334445555554431 00000000100 3344556777
Q ss_pred EEecccCCCCCccc----cc--CCCCCCEEEEeccccCCCeeee------cCCCCcccceeeeccCC
Q 045113 694 SFSNTDLMDDPMPA----LE--KLPLLQVLKLKQNSYSGRKLTC------GSDGFPRLKVLHLKSML 748 (821)
Q Consensus 694 ~L~~~~l~~~~~~~----l~--~l~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~L~L~~~~ 748 (821)
.+..|-++...... +. ..|+|..|...+|...+..+.. ..+..|-|..|.+.+|.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 77777665433322 22 3678888888877665543322 23567888888888763
No 109
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.29 E-value=0.0021 Score=69.29 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=70.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEE--cCCCCCHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-HYFDCHAWVQ--EPYTCYADQILDIIIK 243 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~--~s~~~~~~~~~~~i~~ 243 (821)
.+++|+++.++.+..++..+. ...+-++|.+|+||||+|+.+.+. .. ..+. ..++. .+.......+...+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~--l~~~~~~-~~~i~~~~~~~~~~~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE--LYGEDWR-ENFLELNASDERGIDVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HcCCccc-cceEEeccccccchHHHHHHHHH
Confidence 458899999999999987654 456799999999999999999873 21 1221 11222 2222222222111111
Q ss_pred HhCCchhHHHHHHH--h-CCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 244 FLMPSSRLIILHEY--L-MTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 244 ~l~~~~~~~~l~~~--l-~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
+... . ...+-++++|++.. ....+.+...+......+++|+++..
T Consensus 92 ----------~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 92 ----------FARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred ----------HHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 1111 1 13456899999864 34456666666554556777777643
No 110
>PRK08118 topology modulation protein; Reviewed
Probab=97.29 E-value=0.00012 Score=70.35 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEE
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVK-HYFDCHAW 225 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 225 (821)
+.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999854444 56777775
No 111
>CHL00181 cbbX CbbX; Provisional
Probab=97.29 E-value=0.0023 Score=67.38 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=66.2
Q ss_pred CeeechhhHHHHHHHHh---c-------C---CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCH
Q 045113 168 DTVGLDDRMEELLDLLI---E-------G---PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYA 234 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~---~-------~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 234 (821)
+++|.+..+++|.++.. - + ......+.++|.+|+||||+|+.+++.....+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 57888887776655432 1 1 11233478899999999999999976211111111122444442
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHhC-CCcEEEEEecCCC-----------HHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 235 DQILDIIIKFLMPSSRLIILHEYLM-TKRYLIVIDDVWS-----------IEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 235 ~~~~~~i~~~l~~~~~~~~l~~~l~-~kr~LlVlDdv~~-----------~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
.++... ..+... ....+.+. ...-+|++|++.. .+..+.+...+.+...+.+||.++....+.
T Consensus 100 ~~l~~~----~~g~~~-~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 100 DDLVGQ----YIGHTA-PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHH----Hhccch-HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 222222 211111 11122221 1235999999953 233455555565555566777777654443
No 112
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0027 Score=72.55 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=78.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-------------------ccccceeEEE
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-------------------KHYFDCHAWV 226 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv 226 (821)
-.++||.+...+.+..++..+. -...+-++|..|+||||+|+.+.+.-.- .+.|..++.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 3469999999999999998653 2468889999999999999988762110 1122233444
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
..+...++.++ ++++..+.. .-..+++-++|+|++... ...+.+...+.....+.++|+||.+.
T Consensus 93 DAAs~~~VddI-Reli~~~~y--------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 93 DAASRTKVEDT-RELLDNVPY--------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred cccccCCHHHH-HHHHHHHhh--------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 44433333332 222222110 112356678999999743 56777877777655667787777653
No 113
>PRK08181 transposase; Validated
Probab=97.27 E-value=0.00073 Score=69.94 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDV 270 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv 270 (821)
.-+.++|.+|+|||.||.++.+ +.......++|++ ..++...+....... ....+.+.+. +-=|||+||+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~~-~~~~~l~~l~-~~dLLIIDDl 176 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARREL-QLESAIAKLD-KFDLLILDDL 176 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhCC-cHHHHHHHHh-cCCEEEEecc
Confidence 4589999999999999999987 4433334456664 345555554332211 1222333332 3449999999
Q ss_pred CCH---HHH-HHHHHhCCCCCCCcEEEEEecch
Q 045113 271 WSI---EVW-DIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 271 ~~~---~~~-~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
... ..+ +.+...+.....+..+||||...
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 532 222 22333332211123588888743
No 114
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.00092 Score=61.96 Aligned_cols=81 Identities=11% Similarity=-0.008 Sum_probs=45.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH---HHHHhCCchh---HHHHHHHhCCC-cE
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI---IIKFLMPSSR---LIILHEYLMTK-RY 263 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~---i~~~l~~~~~---~~~l~~~l~~k-r~ 263 (821)
..+.|+|.+|+||||+|+.+.. ........++.+..+........... .......... ...+.+..+.. ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5789999999999999999998 33333233555554443322211111 0000000111 33444444443 49
Q ss_pred EEEEecCCCH
Q 045113 264 LIVIDDVWSI 273 (821)
Q Consensus 264 LlVlDdv~~~ 273 (821)
+|++|+++..
T Consensus 81 viiiDei~~~ 90 (148)
T smart00382 81 VLILDEITSL 90 (148)
T ss_pred EEEEECCccc
Confidence 9999999865
No 115
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0022 Score=72.73 Aligned_cols=121 Identities=13% Similarity=0.094 Sum_probs=72.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccce------------------eEEEEc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDC------------------HAWVQE 228 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~------------------~~wv~~ 228 (821)
.+++|-+...+.+..++..+. -...+-++|.+|+||||+|+.+.+...-.+.+.. +.++..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~ 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc
Confidence 468999998888888887653 2356789999999999999998873221122222 233333
Q ss_pred CCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEec
Q 045113 229 PYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 229 s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
+...++..+ +++.+.+.. .-..+++-++|+|+++.. ..++.+...+........+|++|.
T Consensus 93 ~~~~~vd~i-R~l~~~~~~--------~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 93 ASNNSVEDV-RDLREKVLL--------APLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred cccCCHHHH-HHHHHHHhh--------ccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 222222221 112111110 012346679999999754 568888887776555556555554
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.22 E-value=0.0011 Score=67.78 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
...+.|+|..|+|||+|++++++ +....-..++|++..+ +... ...+.+.+.+-. ++|+||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~----------~~~~~~~~~~~d-~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR----------GPELLDNLEQYE-LVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh----------hHHHHHhhhhCC-EEEEec
Confidence 46789999999999999999987 3332223566775432 2211 112333333332 678999
Q ss_pred CCCH---HHHHH-HHHhCCC-CCCCcEEEEEecc
Q 045113 270 VWSI---EVWDI-IREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 270 v~~~---~~~~~-l~~~l~~-~~~gs~iiiTtr~ 298 (821)
+... ..|.. +...+.. ..+|..||+|++.
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 9632 34543 3333331 2346778988874
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0056 Score=67.16 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=72.7
Q ss_pred CCeeechhhHHHHHHHHhcCCC--------CceEEEEEcCCCChHHHHHHHHhcC-----cc------------c-cccc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPP--------QLSAVTILDSIGLDKTAFAAEAYSG-----NY------------V-KHYF 220 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~--------~~~vi~i~G~gGiGKTtLa~~v~~~-----~~------------~-~~~F 220 (821)
.+++|-+..++.+...+..+.. -...+-++|+.|+||||+|+.+.+. +. + .+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3588999999999999976531 3567889999999999999887541 00 0 0111
Q ss_pred ceeEEEEcC-CCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEec
Q 045113 221 DCHAWVQEP-YTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 221 ~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
....++... ....+.++ +++.+.+.. .-..+++-++++|++... ...+.+...+.....+..+|++|.
T Consensus 85 pD~~~i~~~~~~i~i~~i-R~l~~~~~~--------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEV-RELVTIAAR--------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred CCEEEeccccccCCHHHH-HHHHHHHHh--------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 112233221 22333332 122222111 011245558888999753 556777777766666777777666
Q ss_pred ch
Q 045113 298 KI 299 (821)
Q Consensus 298 ~~ 299 (821)
+.
T Consensus 156 ~~ 157 (394)
T PRK07940 156 SP 157 (394)
T ss_pred Ch
Confidence 64
No 118
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.003 Score=71.95 Aligned_cols=127 Identities=12% Similarity=0.075 Sum_probs=77.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc------------------------ccccc
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV------------------------KHYFD 221 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~------------------------~~~F~ 221 (821)
-.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.- .+.|.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 3469999999999999997653 2456788999999999999887652110 01222
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEE-Eecc
Q 045113 222 CHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLI-TLAK 298 (821)
Q Consensus 222 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iii-Ttr~ 298 (821)
.++++..+...+++++- ++++.+.. .-..++.-++|+|++... ..++.+...+.....+.++|+ ||..
T Consensus 94 DviEIdAas~~gVDdIR-eLie~~~~--------~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 94 DYIEMDAASNRGVDEMA-QLLDKAVY--------APTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred cceEecccccCCHHHHH-HHHHHHHh--------chhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 34444444333333322 12221110 112356679999999753 678888888876555666554 4444
Q ss_pred hhhh
Q 045113 299 IDTV 302 (821)
Q Consensus 299 ~~v~ 302 (821)
..+.
T Consensus 165 ~kLl 168 (700)
T PRK12323 165 QKIP 168 (700)
T ss_pred Hhhh
Confidence 4444
No 119
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0027 Score=71.39 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc-------------------cccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-------------------HYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 227 (821)
.++||.+...+.+...+..+. -...+-++|.+|+||||+|+.+.+.-.-. +.+...+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 469999888888777776553 23567899999999999999997631110 0111233444
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.+...++.++. +|.+.... .-..+++-++|+|++... ...+.+...+........+|++|.+
T Consensus 93 aa~~~gid~iR-~i~~~~~~--------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 93 AASNRGIDEIR-KIRDAVGY--------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred CcccCCHHHHH-HHHHHHhh--------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 44333443332 33322111 112356679999999643 4566676666554434554444433
No 120
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.00055 Score=65.35 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=59.6
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccch--hhhccCccCceeec
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTA--DEFWKMKKLRHLNF 595 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~L 595 (821)
.....+||++|.+..++. +..++.|..|.|++|.|..+.+.+...+++|++|.|.+|++.++- ..+..+|+|++|-+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 345677888888765543 566778888888888888777777756777888888888766663 24566778888876
Q ss_pred CCccc
Q 045113 596 GSITL 600 (821)
Q Consensus 596 ~~~~~ 600 (821)
-+|..
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 66655
No 121
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.0036 Score=71.14 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-------------------ccccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-------------------KHYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~ 227 (821)
.++||-+..++.+..++..+. -...+-++|..|+||||+|+.+.+.--- .+.|..++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 469999999999999997653 2346789999999999999888762110 11233345555
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.+....++++ +++++.+.. .-..++.-++|+|++.. ....+.+...+......+++|++|.+
T Consensus 95 aas~~~v~~i-R~l~~~~~~--------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY--------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh--------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4444444443 233332211 11235666899999975 35677787777766666776665543
No 122
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.0047 Score=69.79 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=76.6
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc-----------------------ccee
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY-----------------------FDCH 223 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-----------------------F~~~ 223 (821)
.+++|-+..++.+...+..+. -...+-++|..|+||||+|+.+++.-.-... ...+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 468999999988888776543 2457889999999999999999863111100 0122
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEE-Eecchh
Q 045113 224 AWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLI-TLAKID 300 (821)
Q Consensus 224 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iii-Ttr~~~ 300 (821)
+.+......++.++.. +++... ..-..+++-++|+|+++. ...|+.+...+......+.+|+ ||+...
T Consensus 100 ~eidaas~~~vd~Ir~-iie~a~--------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 100 IEIDAASKTSVDDIRR-IIESAE--------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred EEeeccCCCCHHHHHH-HHHHHH--------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 3333333333333322 222211 011345777899999986 3678888888776666666654 445444
Q ss_pred hh
Q 045113 301 TV 302 (821)
Q Consensus 301 v~ 302 (821)
+.
T Consensus 171 I~ 172 (507)
T PRK06645 171 IP 172 (507)
T ss_pred hh
Confidence 44
No 123
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0045 Score=71.38 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=74.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-------------------ccccceeEEE
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-------------------KHYFDCHAWV 226 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv 226 (821)
-.+++|.+..++.|..++..+. -...+-++|..|+||||+|+.+.+.--- .+.|-..+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3479999999999999988653 2457889999999999999888762100 0112222344
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
..+....+..+ +++++.... .-..+++-++|+|++... ...+.+...+.......++|++|.+.
T Consensus 94 daAs~~gVd~I-Relle~a~~--------~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 94 DAASNTGIDNI-REVLENAQY--------APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred eccccCCHHHH-HHHHHHHHh--------hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 43333333322 222221110 012246678999999753 34666666665544456777666543
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.11 E-value=0.0025 Score=66.38 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=33.4
Q ss_pred CeeechhhHHHHHHHHhc-------------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 168 DTVGLDDRMEELLDLLIE-------------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~-------------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++|.+..+++|.+.... ..+...-+.++|.+|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478988888777544321 123456678999999999999999976
No 125
>PRK06921 hypothetical protein; Provisional
Probab=97.10 E-value=0.002 Score=66.97 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccc-cceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEe
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHY-FDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVID 268 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlD 268 (821)
..-+.++|..|+|||+||.++.+ ++... -..+++++. .++...+.... .......+.+. +-=|||||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~------~~l~~~l~~~~---~~~~~~~~~~~-~~dlLiID 184 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF------VEGFGDLKDDF---DLLEAKLNRMK-KVEVLFID 184 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH------HHHHHHHHHHH---HHHHHHHHHhc-CCCEEEEe
Confidence 56789999999999999999998 44443 345667664 23333332221 11122223333 34599999
Q ss_pred cCCC-------HHHHH--HHHHhCCC-CCCCcEEEEEecchhhhcccccccCCcCCCCccchHHHHHHHcCCc
Q 045113 269 DVWS-------IEVWD--IIREILPD-NQNGSRVLITLAKIDTVTLFQFENGQNIRLDLVPTGGPLRVTYQGW 331 (821)
Q Consensus 269 dv~~-------~~~~~--~l~~~l~~-~~~gs~iiiTtr~~~v~~lf~~~~~~~~~~~~~~~~~~i~~~c~gl 331 (821)
|+.. ..+|. .+...+.. -..+..+||||...-- ++.. --+.++..|+..|.+.
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~-el~~---------~~~~l~sRi~~r~~~~ 247 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTID-ELLD---------IDEALGSRIVEMCKDY 247 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-HHhh---------hhhHHHHHHHHhccCe
Confidence 9922 12443 23333321 1124557888863211 1111 0146677777777654
No 126
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.10 E-value=0.0015 Score=66.88 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
...+.|+|..|+|||+|++.+++ .....-..+.++.+..... . ...+.+.+.. --+|++||
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~---~-------------~~~~~~~~~~-~dlliiDd 105 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW---F-------------VPEVLEGMEQ-LSLVCIDN 105 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh---h-------------hHHHHHHhhh-CCEEEEeC
Confidence 46889999999999999999998 3333333456665543110 0 0111122211 23789999
Q ss_pred CCCH---HHHHH-HHHhCCC-CCCC-cEEEEEecch
Q 045113 270 VWSI---EVWDI-IREILPD-NQNG-SRVLITLAKI 299 (821)
Q Consensus 270 v~~~---~~~~~-l~~~l~~-~~~g-s~iiiTtr~~ 299 (821)
+... ..|+. +...+.. ...| .++|+||+..
T Consensus 106 i~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 106 IECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 9642 34542 2222221 1123 4799998843
No 127
>PRK10536 hypothetical protein; Provisional
Probab=97.10 E-value=0.0042 Score=62.92 Aligned_cols=126 Identities=10% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE----cCCC--C---CHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQ----EPYT--C---YADQ 236 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~----~s~~--~---~~~~ 236 (821)
...+.++......++.+|... .+|.+.|.+|.|||+||.++..+.-..+.|+..+-+. +.+. | +..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 345778999999999988763 3999999999999999998776422234455444331 1111 0 1211
Q ss_pred H----HHHHHHHhC---CchhHHHH------------HHHhCCCcE---EEEEecCCCHHHHHHHHHhCCCCCCCcEEEE
Q 045113 237 I----LDIIIKFLM---PSSRLIIL------------HEYLMTKRY---LIVIDDVWSIEVWDIIREILPDNQNGSRVLI 294 (821)
Q Consensus 237 ~----~~~i~~~l~---~~~~~~~l------------~~~l~~kr~---LlVlDdv~~~~~~~~l~~~l~~~~~gs~iii 294 (821)
- ...+.+.+. .....+.+ -.++++..+ +||+|...+... ..+...+..-+.+||||+
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIV 208 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEE
Confidence 1 111111111 11111211 124555544 999999976432 344444444567899987
Q ss_pred Ee
Q 045113 295 TL 296 (821)
Q Consensus 295 Tt 296 (821)
|=
T Consensus 209 ~G 210 (262)
T PRK10536 209 NG 210 (262)
T ss_pred eC
Confidence 74
No 128
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.09 E-value=0.0029 Score=71.14 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..-.++.|.+..+++|.+.+..+ -...+-+-++|.+|+|||++|+++++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 33456889999999998887531 123456889999999999999999983
No 129
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0044 Score=70.92 Aligned_cols=122 Identities=13% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-------------------ccccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-------------------KHYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~ 227 (821)
.+++|-+..++.+..++..+. -...+-++|..|+||||+|+.+.+.--- .+.|...+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 468999999999998887653 2356779999999999999888652100 01233344454
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.+....+.++ +++++.+.. .-..+++-++|+|++... ...+.+...+......+.+|++|.+
T Consensus 95 ~~~~~~vd~i-r~l~~~~~~--------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 95 AASNTQVDAM-RELLDNAQY--------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred ccccCCHHHH-HHHHHHHhh--------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 3333333332 233322111 012356779999999754 4577787777765556666665543
No 130
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.09 E-value=0.0023 Score=65.23 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCc-hhHHHH
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS-SRLIIL 254 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~~~l 254 (821)
+..+.++...-......+.++|.+|+|||+||.++.+ .....-..+++++ ..++...+-...... .....+
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it------~~~l~~~l~~~~~~~~~~~~~~ 156 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT------VADIMSAMKDTFSNSETSEEQL 156 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE------HHHHHHHHHHHHhhccccHHHH
Confidence 4444444433232345788999999999999999998 4433334556663 445555444433211 113345
Q ss_pred HHHhCCCcEEEEEecCCCH--HHHHH--HHHhCCC-CCCCcEEEEEecc
Q 045113 255 HEYLMTKRYLIVIDDVWSI--EVWDI--IREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 255 ~~~l~~kr~LlVlDdv~~~--~~~~~--l~~~l~~-~~~gs~iiiTtr~ 298 (821)
.+.+. +.=+||+||+... .+|+. +...+.. -...-.+||||..
T Consensus 157 l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 157 LNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 55565 3458888999643 34542 2222221 1123457777763
No 131
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0049 Score=69.07 Aligned_cols=122 Identities=15% Similarity=0.131 Sum_probs=77.6
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC------cc------------cc-cccceeEEE
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG------NY------------VK-HYFDCHAWV 226 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~------~~------------~~-~~F~~~~wv 226 (821)
-.++||-+...+.+...+..+. -...+-++|..|+||||+|+.+.+. +. +. +.+..++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3568999988888888776653 2347889999999999999888641 00 11 122344566
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEec
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
..+...++.++- +|++.... .-..+++-++|+|++.. ....+.+...+....+.+++|++|.
T Consensus 91 daas~~~vddIR-~Iie~~~~--------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 91 DAASNTSVDDIK-VILENSCY--------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred ecccCCCHHHHH-HHHHHHHh--------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 665555555433 23322110 01234666899999964 3567888888777666777766654
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.05 E-value=0.0028 Score=63.96 Aligned_cols=121 Identities=13% Similarity=0.184 Sum_probs=69.7
Q ss_pred Ceeec-hhhHHHHHHHHhc-CCCCceEEEEEcCCCChHHHHHHHHhcCccccccc-c-eeEEEEcCCCCCHHHHHHHHHH
Q 045113 168 DTVGL-DDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF-D-CHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 168 ~~vGr-~~~~~~i~~~L~~-~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
-++|- ....-...+.+.. ++.....+-|+|..|+|||+|.+++++ ++.+.. . .++++ +..++...+..
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~ 81 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFAD 81 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHH
Confidence 34564 3333344444444 343466789999999999999999998 554332 2 34555 34556666655
Q ss_pred HhCCchhHHHHHHHhCCCcEEEEEecCCCH---HHHH-HHHHhCCC-CCCCcEEEEEecc
Q 045113 244 FLMPSSRLIILHEYLMTKRYLIVIDDVWSI---EVWD-IIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 244 ~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~-~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
.+.. .....+.+.+.+ -=+|++||+... ..|. .+...+.. ...|-+||+|++.
T Consensus 82 ~~~~-~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 82 ALRD-GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHHT-TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHc-ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 5544 224556666663 347889999642 2333 22222221 2346789999863
No 133
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=0.00012 Score=83.99 Aligned_cols=81 Identities=21% Similarity=0.159 Sum_probs=44.6
Q ss_pred cCCCCCcceEEEecccCCCCC-cccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeec-ccc-c
Q 045113 684 YVFPHSLTHLSFSNTDLMDDP-MPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMG-TGA-M 760 (821)
Q Consensus 684 ~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~-l 760 (821)
...+++|+.+.+..|...... ...+.++|+|. ..+.. ....+..++.|.+..|.....-... ... +
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~----------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~ 426 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL----------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSC 426 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH----------HhccCCccceEecccCccccccchHHHhhhh
Confidence 345777777777777643333 24556677663 22220 0122233788888887655422111 111 6
Q ss_pred cccceeEEeecCCCC
Q 045113 761 PKLECLIINPCAYLK 775 (821)
Q Consensus 761 ~~L~~L~i~~c~~l~ 775 (821)
..+..+.+.+|+...
T Consensus 427 ~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 427 SNLKDLDLSGCRVIT 441 (482)
T ss_pred hccccCCccCccccc
Confidence 677888888887654
No 134
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.04 E-value=0.0021 Score=59.05 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 045113 193 VTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~~ 213 (821)
|-|+|.+|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999983
No 135
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.0011 Score=68.17 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
-.-+.++|.+|+|||+||..+.+... ...+ .+.|+ +..++...+........-...+.+ + .+.-+||+||
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~~~~~~~~l~~-l-~~~dlLIIDD 167 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHHAGRLQAELVK-L-GRYPLLIVDE 167 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHhcCcHHHHHHH-h-ccCCEEEEcc
Confidence 34689999999999999999987321 1222 23333 334455554433211111222222 2 2345899999
Q ss_pred CCCH---HHH-HHHHHhCCC-CCCCcEEEEEecch
Q 045113 270 VWSI---EVW-DIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 270 v~~~---~~~-~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
+... ..+ +.+...+.. ...++ +|+||...
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 9632 122 122222221 12244 88888743
No 136
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.0016 Score=65.58 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQE 228 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 228 (821)
-.++|+|..|+|||||+..+.. ...+.|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4678999999999999999987 57788977777654
No 137
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0042 Score=70.35 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=63.9
Q ss_pred CCCCeeechhhHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
-+.+-+|.++.+++|+++|.-. .-.-.++++||++|||||.|++.|.+ .....|- -+++..-.|..+|-..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGH 395 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGH 395 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhccc
Confidence 3567899999999999999642 33457999999999999999999998 5665552 2233333333322111
Q ss_pred HHHHhCCchh-HHHHHHHhCCCcEEEEEecCCC
Q 045113 241 IIKFLMPSSR-LIILHEYLMTKRYLIVIDDVWS 272 (821)
Q Consensus 241 i~~~l~~~~~-~~~l~~~l~~kr~LlVlDdv~~ 272 (821)
=-.-++.... .-.-.+..+.++=+++||.++.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDK 428 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDK 428 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhh
Confidence 0000000000 1111223356788999999974
No 138
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.0047 Score=71.46 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc-------------------cccceeEEE
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-------------------HYFDCHAWV 226 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 226 (821)
-.++||-+..++.+...+..+. -...+-++|..|+||||+|+.+.+.---. +.|...+.+
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei 93 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI 93 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence 3469999999999988887654 23557899999999999999887631110 112122333
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
..+....++++ ++|.+.+. ..-..+++-++|+|++.. ....+.+...+.......++|.+|.+.
T Consensus 94 daas~~~Vddi-R~li~~~~--------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 94 DAASRTKVEDT-RELLDNVQ--------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred cccccCCHHHH-HHHHHHHH--------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 33322233322 22222211 111246777999999964 367788877777655566655554443
No 139
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0051 Score=70.97 Aligned_cols=122 Identities=11% Similarity=0.119 Sum_probs=73.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc------------------------ccccce
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV------------------------KHYFDC 222 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~------------------------~~~F~~ 222 (821)
.++||-+..++.+..++..+. -...+-++|..|+||||+|+.+.+.--- .+.|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D 94 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD 94 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc
Confidence 468998888888888887653 2467789999999999999888431000 011222
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 223 HAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 223 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
++++..+...+++++ +++++.+.. .-..++.-++|+|++.. ...++.+...+.......++|++|.+
T Consensus 95 ~~eldaas~~~Vd~i-Reli~~~~~--------~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 95 YTELDAASNRGVDEV-QQLLEQAVY--------KPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred eeecCcccccCHHHH-HHHHHHHHh--------CcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 333433333333332 222222110 01124555899999975 36788888888765556666655533
No 140
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.96 E-value=0.005 Score=61.61 Aligned_cols=118 Identities=13% Similarity=0.197 Sum_probs=69.7
Q ss_pred CCCCCCeeechhhHHHHHHHHh---cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC--CCHHHH
Q 045113 163 SFKNRDTVGLDDRMEELLDLLI---EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT--CYADQI 237 (821)
Q Consensus 163 ~~~~~~~vGr~~~~~~i~~~L~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~ 237 (821)
.+.-..++|.|..++.|++=-. .+. ...-+-+||..|.|||++++++.+...-.+ . .. |.|++. .++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G-L-Rl--Iev~k~~L~~l~-- 95 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG-L-RL--IEVSKEDLGDLP-- 95 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC-c-eE--EEECHHHhccHH--
Confidence 3455689999999988765332 232 245566799999999999999998321111 1 12 222221 2333
Q ss_pred HHHHHHHhCCchhHHHHHHHh--CCCcEEEEEecCC---CHHHHHHHHHhCCC---CCCCc-EEEEEecchhhh
Q 045113 238 LDIIIKFLMPSSRLIILHEYL--MTKRYLIVIDDVW---SIEVWDIIREILPD---NQNGS-RVLITLAKIDTV 302 (821)
Q Consensus 238 ~~~i~~~l~~~~~~~~l~~~l--~~kr~LlVlDdv~---~~~~~~~l~~~l~~---~~~gs-~iiiTtr~~~v~ 302 (821)
.|.+.+ ...||+|.+||+. +......++..+.. ..+.. .|..||..++..
T Consensus 96 ---------------~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 96 ---------------ELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ---------------HHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 333333 3589999999995 23456777766653 22333 344455444443
No 141
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0053 Score=69.98 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=71.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc--------------------cccceeEE
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK--------------------HYFDCHAW 225 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~w 225 (821)
-.+++|.+..++.+...+..+. -...+-++|+.|+||||+|+.+.+.-.-. .|. ..++
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~-Diie 92 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSV-DIVE 92 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCC-ceEE
Confidence 3468999999999999887653 23578899999999999999887621000 011 1233
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEec
Q 045113 226 VQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 226 v~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
+..+....+.++ +++...+.. .. ..+++-++|+|++.. ...++.+...+........+|++|.
T Consensus 93 Idaas~igVd~I-ReIi~~~~~-------~P-~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 93 LDAASNNGVDEI-RNIIDNINY-------LP-TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred eccccccCHHHH-HHHHHHHHh-------ch-hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 433222333322 222222111 00 123344699999964 4567778777765555566665553
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.96 E-value=0.0047 Score=65.03 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=63.7
Q ss_pred CeeechhhHHHHHHHHhc----------C---CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCH
Q 045113 168 DTVGLDDRMEELLDLLIE----------G---PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYA 234 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~----------~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 234 (821)
.++|.+..+++|.++... + .....-+-++|.+|+||||+|+.+..-..-.+......|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 478888877776554321 1 01123577999999999999977765211111111223444442
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHhC-CCcEEEEEecCCC-----------HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 235 DQILDIIIKFLMPSSRLIILHEYLM-TKRYLIVIDDVWS-----------IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 235 ~~~~~~i~~~l~~~~~~~~l~~~l~-~kr~LlVlDdv~~-----------~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
.++ ...+.+... ..+.+.+. ...-+|+||++.. .+.++.+...+.....+-+||.++...
T Consensus 99 ~~l----~~~~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 99 DDL----VGQYIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred HHH----hHhhcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 122 222222111 11222221 1346899999852 233455666665555556666666543
No 143
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0057 Score=67.82 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|-+..+..+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999888887764 224678999999999999999987
No 144
>PRK09183 transposase/IS protein; Provisional
Probab=96.95 E-value=0.0022 Score=66.47 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
-..+.|+|.+|+|||+||..+.+. ....-..+.++. ..++...+........-...+.+. -.+.-++|+||
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~--a~~~G~~v~~~~------~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDd 172 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE--AVRAGIKVRFTT------AADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDE 172 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe------HHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcc
Confidence 346779999999999999999763 221112233443 333443332221111101222222 23456999999
Q ss_pred CCCH----HHHHHHHHhCCC-CCCCcEEEEEecc
Q 045113 270 VWSI----EVWDIIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 270 v~~~----~~~~~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
+... ...+.+...+.. -..++ +||||..
T Consensus 173 lg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 173 IGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred cccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 9642 221223222221 12344 8888863
No 145
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.93 E-value=0.022 Score=59.03 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=74.1
Q ss_pred CCCeeec---hhhHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHHhcCcccc-----cccceeEEEEcCCCCCHHH
Q 045113 166 NRDTVGL---DDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-----HYFDCHAWVQEPYTCYADQ 236 (821)
Q Consensus 166 ~~~~vGr---~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~~s~~~~~~~ 236 (821)
.+..||- ...++++.++|..+ ..+..-+.|||-.|.|||++++.+....-.. ..+ .++.|.....++...
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERR 111 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHH
Confidence 3445664 34445556666554 3457889999999999999999998642211 111 577788888999999
Q ss_pred HHHHHHHHhCCchh--------HHHHHHHhCC-CcEEEEEecCCC
Q 045113 237 ILDIIIKFLMPSSR--------LIILHEYLMT-KRYLIVIDDVWS 272 (821)
Q Consensus 237 ~~~~i~~~l~~~~~--------~~~l~~~l~~-kr~LlVlDdv~~ 272 (821)
+...|+.+++.+.. ...+...++. +--+||+|.+-+
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99999999998742 2333455543 455899999964
No 146
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0064 Score=67.43 Aligned_cols=120 Identities=12% Similarity=0.068 Sum_probs=70.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----------------------------
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK---------------------------- 217 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~---------------------------- 217 (821)
-.+++|.+..++.+..++..+. -...+-++|+.|+||||+|..+.+.-.-.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3468999998888888887653 23468899999999999998877521100
Q ss_pred cccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEE
Q 045113 218 HYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLIT 295 (821)
Q Consensus 218 ~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiT 295 (821)
.+++... +..+....+.++. ++.+.+.. .-..+++-++|+|++.. ...++.+...+......+.+|++
T Consensus 94 ~~~n~~~-~~~~~~~~id~Ir-~l~~~~~~--------~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 94 TSLNISE-FDAASNNSVDDIR-LLRENVRY--------GPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred CCCCeEe-ecccccCCHHHHH-HHHHHHhh--------chhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1122111 1111111222221 12221110 01234566889999964 35788888888766667776655
Q ss_pred e
Q 045113 296 L 296 (821)
Q Consensus 296 t 296 (821)
|
T Consensus 164 t 164 (397)
T PRK14955 164 T 164 (397)
T ss_pred e
Confidence 5
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.89 E-value=0.0045 Score=69.39 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=59.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccc-c-eeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYF-D-CHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVI 267 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVl 267 (821)
...+-|+|.+|+|||+|++++.+ ++...+ . .++|++. .++..++...+.... ...+.+.+..+.-+|++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~~-~~~f~~~~~~~~dvLlI 200 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEGK-LNEFREKYRKKVDVLLI 200 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhccc-HHHHHHHHHhcCCEEEE
Confidence 45699999999999999999998 454433 3 4566643 455566665554321 33444444445568999
Q ss_pred ecCCCH---HHH-HHHHHhCCC-CCCCcEEEEEec
Q 045113 268 DDVWSI---EVW-DIIREILPD-NQNGSRVLITLA 297 (821)
Q Consensus 268 Ddv~~~---~~~-~~l~~~l~~-~~~gs~iiiTtr 297 (821)
||+... ..+ +.+...+.. ...|..||+||.
T Consensus 201 DDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 201 DDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred echhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 999632 111 223222221 122456888875
No 148
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0031 Score=65.03 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEe
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVID 268 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlD 268 (821)
+..-+.++|.+|+|||.||.++.+ ++...=-.+.++ +..++..++............+.+.++. -=|||||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~------~~~el~~~Lk~~~~~~~~~~~l~~~l~~-~dlLIiD 174 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFI------TAPDLLSKLKAAFDEGRLEEKLLRELKK-VDLLIID 174 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEE------EHHHHHHHHHHHHhcCchHHHHHHHhhc-CCEEEEe
Confidence 466789999999999999999999 454322345555 3455666666555542223344443433 2388999
Q ss_pred cCCC
Q 045113 269 DVWS 272 (821)
Q Consensus 269 dv~~ 272 (821)
|+-.
T Consensus 175 DlG~ 178 (254)
T COG1484 175 DIGY 178 (254)
T ss_pred cccC
Confidence 9964
No 149
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.85 E-value=0.012 Score=64.54 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=73.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcc---c-----------------ccccceeEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNY---V-----------------KHYFDCHAWV 226 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~---~-----------------~~~F~~~~wv 226 (821)
.+++|.+..++.+.+.+..+. -...+-++|.+|+||||+|+.+...-. . ..+|+. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 468999999999999887653 235678899999999999988765210 0 013333 344
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
..+...++.. .+++...+.. .-..+++-++|+|++... ...+.+...+......+.+|++|.+..
T Consensus 92 ~~~~~~~~~~-~~~l~~~~~~--------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 92 DAASNNGVDD-IREILDNVKY--------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPH 158 (355)
T ss_pred eccccCCHHH-HHHHHHHHhc--------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHH
Confidence 3332222222 1222222111 012245568899998543 567777777765555677777765443
No 150
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.002 Score=70.04 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=37.9
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+++|-+...+.+.+.+..+. -...+-++|..|+||+|+|..+.+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 45679999999999999888763 244688999999999999866554
No 151
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.0046 Score=69.39 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEcCCCCCHHHHHHHHHHHhCCch-hHHHHHHHhCCCcEEEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYF--DCHAWVQEPYTCYADQILDIIIKFLMPSS-RLIILHEYLMTKRYLIV 266 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~~~l~~~l~~kr~LlV 266 (821)
...+-|+|..|+|||+|++++.+ .+.... ..++++ +..++...+...+.... ....+.+.++. .-+||
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~~~~~~~~~~~~~-~dvLi 211 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTHKEIEQFKNEICQ-NDVLI 211 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CCEEE
Confidence 46789999999999999999998 443222 233444 34556666666655321 23444454543 44888
Q ss_pred EecCCCH---HH-HHHHHHhCCC-CCCCcEEEEEecch
Q 045113 267 IDDVWSI---EV-WDIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 267 lDdv~~~---~~-~~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
+||+... .. .+.+...+.. ...|..||+|+...
T Consensus 212 IDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 212 IDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred EeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 9999532 22 2344443331 22345788887643
No 152
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.80 E-value=0.006 Score=65.18 Aligned_cols=98 Identities=12% Similarity=0.181 Sum_probs=54.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH-hCCchhHHHHHHHhCCCcEEEEEec
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF-LMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
.-+.++|.+|+|||+||.++.+ ++...-..++++++ .++...+... .....+.....+.+.+ -=||||||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~~~~~~~~~~~l~~-~DLLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNNDKELEEVYDLLIN-CDLLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhccchhHHHHHHHhcc-CCEEEEec
Confidence 6799999999999999999998 44333335666654 3333333322 1111112212333332 24899999
Q ss_pred CCCH--HHH--HHHHHhCCC-CCCCcEEEEEec
Q 045113 270 VWSI--EVW--DIIREILPD-NQNGSRVLITLA 297 (821)
Q Consensus 270 v~~~--~~~--~~l~~~l~~-~~~gs~iiiTtr 297 (821)
+... ..| +.+...+.. -..+-.+||||.
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 9543 222 233333321 122456888886
No 153
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.80 E-value=0.0035 Score=63.92 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=30.2
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 170 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.|.+.........+.........+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45554444434333333334568899999999999999999983
No 154
>PRK09087 hypothetical protein; Validated
Probab=96.80 E-value=0.007 Score=61.32 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-+.+.|+|..|+|||||++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999874
No 155
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.78 E-value=0.011 Score=64.96 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=39.0
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+.-.++.|.+..+++|.+.+... -...+-|.++|.+|.|||++|+++.+
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999988876421 12457788999999999999999998
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.77 E-value=0.006 Score=73.18 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=37.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997764 33456999999999999999887
No 157
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.77 E-value=0.017 Score=56.93 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc--------------------cccceeEEEEc-CCCCCHHH
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK--------------------HYFDCHAWVQE-PYTCYADQ 236 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~-s~~~~~~~ 236 (821)
.+.+.+..+. -...+-++|..|+||||+|+.+.+.-.-. .+.|. .++.. ....+++.
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ 80 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH
Confidence 4455554443 23678899999999999998876621111 12222 22222 22233333
Q ss_pred HHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 237 ILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 237 ~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
+. ++.+.+... -..+.+-++|+|++.. ...++.+...+....+.+.+|++|++.
T Consensus 81 i~-~i~~~~~~~--------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 81 VR-ELVEFLSRT--------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred HH-HHHHHHccC--------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 22 222222110 0134666899999964 356788888887666667777777643
No 158
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.75 E-value=0.0057 Score=68.26 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=64.7
Q ss_pred CeeechhhH--HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEcCCCCCHHHHHHHHHH
Q 045113 168 DTVGLDDRM--EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD--CHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 168 ~~vGr~~~~--~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
-++|.+... ..+.++..........+.|+|..|+|||+|++++++ ++..... .+++++ ..++...+..
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~ 183 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVN 183 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHH
Confidence 355754432 222333332222345789999999999999999998 4544332 345553 3344444554
Q ss_pred HhCCchhHHHHHHHhCCCcEEEEEecCCCH---HH-HHHHHHhCCC-CCCCcEEEEEecc
Q 045113 244 FLMPSSRLIILHEYLMTKRYLIVIDDVWSI---EV-WDIIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 244 ~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~-~~~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
.+... ....+.+.+++ .-+|||||+... .. .+.+...+.. ...|..||+||..
T Consensus 184 ~~~~~-~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 184 ALRNN-KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHcC-CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 44322 13344444443 348899999642 11 1223332221 1234568887764
No 159
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.75 E-value=0.0039 Score=64.11 Aligned_cols=91 Identities=11% Similarity=0.176 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh---------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD-CHAWVQEPYTC-YADQILDIIIKFLMPS--------SR--------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~--------- 250 (821)
-+.++|+|-.|+|||||++.+++ .++.+|+ .++++-+.+.. .+.++.+++...-... .+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 56899999999999999999998 5665664 45556666654 3556666665432111 01
Q ss_pred ---HHHHHHHh---CCCcEEEEEecCCCH-HHHHHHHHh
Q 045113 251 ---LIILHEYL---MTKRYLIVIDDVWSI-EVWDIIREI 282 (821)
Q Consensus 251 ---~~~l~~~l---~~kr~LlVlDdv~~~-~~~~~l~~~ 282 (821)
+-.+.+++ +++.+|+++||+-.. ..+.++...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~ 185 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSAL 185 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHH
Confidence 34455555 389999999999543 344444433
No 160
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.75 E-value=0.0047 Score=65.48 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=68.5
Q ss_pred echhhHHHHHHHHhcCC--CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCc
Q 045113 171 GLDDRMEELLDLLIEGP--PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS 248 (821)
Q Consensus 171 Gr~~~~~~i~~~L~~~~--~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 248 (821)
++....+...+++..-. ...+-+.++|..|+|||.||.++++ +....=..+.++++ .++..++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH------HHHHHHHHHHHhcC
Confidence 45555555566665321 2356789999999999999999999 44332233556654 34555555444322
Q ss_pred hhHHHHHHHhCCCcEEEEEecCCCH--HHHH--HHHHhC-CCC-CCCcEEEEEecc
Q 045113 249 SRLIILHEYLMTKRYLIVIDDVWSI--EVWD--IIREIL-PDN-QNGSRVLITLAK 298 (821)
Q Consensus 249 ~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~--~l~~~l-~~~-~~gs~iiiTtr~ 298 (821)
. .....+.++ +-=||||||+... .+|. .+...+ ... ..+-.+|+||..
T Consensus 207 ~-~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 S-VKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-HHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 222333333 4558999999643 4564 343333 221 235568888864
No 161
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.015 Score=67.00 Aligned_cols=125 Identities=11% Similarity=0.035 Sum_probs=75.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----------------------cccceeE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK----------------------HYFDCHA 224 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----------------------~~F~~~~ 224 (821)
.+++|.+..++.+..++..+. -...+-++|..|+||||+|+.+.+.-.-. .+. .++
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~-dvi 90 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI-DVV 90 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc-eEE
Confidence 468999999999999987653 24467899999999999998887621100 111 133
Q ss_pred EEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEe-cchhh
Q 045113 225 WVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITL-AKIDT 301 (821)
Q Consensus 225 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v 301 (821)
.+..+...++.++ ++|.+.+. ..-..+++-++|+|++.. ....+.+...+........+|++| ....+
T Consensus 91 eidaas~~gvd~i-Rel~~~~~--------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 91 ELDAASHGGVDDT-RELRDRAF--------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred EeccccccCHHHH-HHHHHHHH--------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 3433333233332 22221111 001124566889999964 467888888887666566655555 44433
Q ss_pred h
Q 045113 302 V 302 (821)
Q Consensus 302 ~ 302 (821)
.
T Consensus 162 l 162 (584)
T PRK14952 162 L 162 (584)
T ss_pred H
Confidence 3
No 162
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.74 E-value=0.0013 Score=62.96 Aligned_cols=119 Identities=23% Similarity=0.240 Sum_probs=76.8
Q ss_pred eEEEeCCCCCCcccccccC-CCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhcc-CccCceeecCCc
Q 045113 521 RVLDLGSLVLNQYPSEIEN-LSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWK-MKKLRHLNFGSI 598 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~-l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~L~~~ 598 (821)
+.++|.+..+...-. ++. +.+.-.++|++|.+..++ .+. .++.|.+|.+++|.|..+-+.+.. +++|..|.+.+|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc-cCC-CccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 556666665542221 221 345678899999877655 333 788999999999999998665654 778999999999
Q ss_pred ccCCCCC--CCcCCCCCcceeccccC------CcchhhhcCCCCCCCeEEEecc
Q 045113 599 TLPAHPG--NYCGSLENLNFISALYP------CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 599 ~~~~~~p--~~i~~l~~L~~L~~~~~------~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
++.. +. ..+..++.|+.|.+.+| ..-.-- +..+|+|+.|+..+.
T Consensus 99 si~~-l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv-l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQE-LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV-LYKLPSLRTLDFQKV 150 (233)
T ss_pred chhh-hhhcchhccCCccceeeecCCchhcccCceeEE-EEecCcceEeehhhh
Confidence 8732 22 22556666777666553 111112 556677777776665
No 163
>PRK06620 hypothetical protein; Validated
Probab=96.74 E-value=0.0073 Score=60.65 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
+.+-|+|.+|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998874
No 164
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.038 Score=64.59 Aligned_cols=110 Identities=17% Similarity=0.332 Sum_probs=72.5
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEcCCCCCHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF---DCHAWVQEPYTCYAD 235 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~ 235 (821)
...++|-|..++.+.+.+.-. ...+.++-.+|+.|||||.||+.+.. ..| +..+-+ |+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~------DMS 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRI------DMS 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceee------chH
Confidence 356999999999999888642 23467888899999999999888775 123 222222 222
Q ss_pred HHHH--HHHHHhCCchh------HHHHHHHhCCCcE-EEEEecCCC--HHHHHHHHHhCCCC
Q 045113 236 QILD--IIIKFLMPSSR------LIILHEYLMTKRY-LIVIDDVWS--IEVWDIIREILPDN 286 (821)
Q Consensus 236 ~~~~--~i~~~l~~~~~------~~~l~~~l~~kr~-LlVlDdv~~--~~~~~~l~~~l~~~ 286 (821)
+..+ .+.+-++.+.. ...|-+..+.++| +|.||.|.. ++-.+.+...+.++
T Consensus 559 Ey~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 559 EYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2221 22222333322 6677788888888 888999975 46677777777643
No 165
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.70 E-value=0.0082 Score=67.89 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=65.0
Q ss_pred eeechhh--HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 169 TVGLDDR--MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD--CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 169 ~vGr~~~--~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
++|.... ......+..........+.|+|.+|+|||+|++++.+ ++...+. .+++++. .++..++...
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~ 196 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNA 196 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHH
Confidence 5564432 3333333333333356789999999999999999999 5554442 3455543 3333444444
Q ss_pred hCCchhHHHHHHHhCCCcEEEEEecCCCH---H-HHHHHHHhCCC-CCCCcEEEEEecch
Q 045113 245 LMPSSRLIILHEYLMTKRYLIVIDDVWSI---E-VWDIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 245 l~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~-~~~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
+... ....+.+.++ +.-+||+||+... . ..+.+...+.. ...|..||+||...
T Consensus 197 ~~~~-~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 197 LRNN-TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHcC-cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 4321 1334444454 3448999999532 1 12233332221 12245688887653
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.022 Score=61.66 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=39.6
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.....++|-+...+.+...+..+. -...+-|+|..|+||||+|..+.+
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 455679999999999999997763 245788999999999999987765
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.68 E-value=0.0049 Score=74.80 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=37.8
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998764 33456899999999999998887
No 168
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.67 E-value=0.004 Score=75.31 Aligned_cols=126 Identities=12% Similarity=0.131 Sum_probs=71.7
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 238 (821)
...++|.+..++.+.+.+... .....++.++|..|+|||.||+.+.. .+-+.....+-+.++.-.. .
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~-~--- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEFQE-A--- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhh-h---
Confidence 357999999999999988531 22356789999999999999988876 2211111122222221110 0
Q ss_pred HHHHHHhCCch------hHHHHHHHhC-CCcEEEEEecCCC--HHHHHHHHHhCCCCC-----------CCcEEEEEec
Q 045113 239 DIIIKFLMPSS------RLIILHEYLM-TKRYLIVIDDVWS--IEVWDIIREILPDNQ-----------NGSRVLITLA 297 (821)
Q Consensus 239 ~~i~~~l~~~~------~~~~l~~~l~-~kr~LlVlDdv~~--~~~~~~l~~~l~~~~-----------~gs~iiiTtr 297 (821)
..+..-++.+. +...+.+.++ ...-+|+||++.. ...++.+...+..+. ..+-||+||.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSN 717 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSN 717 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCC
Confidence 01111111111 1223444444 4556999999974 355666666665432 3455666765
No 169
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.011 Score=64.97 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc------ccccceeE-EEEcCCCCCHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV------KHYFDCHA-WVQEPYTCYADQILD 239 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~-wv~~s~~~~~~~~~~ 239 (821)
.+++|.+...+.+...+..+. -...+-++|.+|+||||+|+.+.+.-.- ...|...+ -+......++.++.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~- 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR- 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-
Confidence 468999999999999997653 2457889999999999999998763110 11222111 11111112222222
Q ss_pred HHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEec
Q 045113 240 IIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 240 ~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
++++.+.. .-..+++-++++|++.. ...++.+...+......+.+|++|.
T Consensus 95 ~l~~~~~~--------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~ 146 (367)
T PRK14970 95 NLIDQVRI--------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATT 146 (367)
T ss_pred HHHHHHhh--------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 22221110 01124556899999864 3457777666655444556665553
No 170
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.66 E-value=0.0068 Score=62.69 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhCCc
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH----YFDCHAWVQEPYTCYADQILDIIIKFLMPS 248 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 248 (821)
.|-+.|.++=..-.+.=|+|.+|+|||.||..++-...+.. .=..++|++....|+.+.+. +|++.....
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~ 99 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLD 99 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccc
Confidence 34445544433467999999999999999987764323221 12369999999999988876 466665443
No 171
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.66 E-value=0.0066 Score=72.85 Aligned_cols=114 Identities=10% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC---CHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC---YAD 235 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~---~~~ 235 (821)
...++|.+..++.|.+.+... .....++.++|..|+|||+||+.+.. .. +...+.++.+.-. .+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcccHH
Confidence 356899999999998888742 12345788999999999999999987 33 2233445444321 122
Q ss_pred HHHHHHHHHhCCchhHHHHHHHhCCCc-EEEEEecCCC--HHHHHHHHHhCCC
Q 045113 236 QILDIIIKFLMPSSRLIILHEYLMTKR-YLIVIDDVWS--IEVWDIIREILPD 285 (821)
Q Consensus 236 ~~~~~i~~~l~~~~~~~~l~~~l~~kr-~LlVlDdv~~--~~~~~~l~~~l~~ 285 (821)
.+...-....+ .+....+.+.++.++ -+++||+++. .+.++.+...+..
T Consensus 528 ~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 528 RLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 22111000000 011334555555444 5999999975 3566666666653
No 172
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.015 Score=69.57 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=74.6
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----------------------cccceeE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK----------------------HYFDCHA 224 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----------------------~~F~~~~ 224 (821)
.++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+.-.-. .++| ++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~ 92 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VT 92 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EE
Confidence 468999999999999988654 23567899999999999998886531100 1122 23
Q ss_pred EEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 225 WVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 225 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
++.......+.++- ++.+.+. ..-..+++-++|||++.. ...++.|...+..-...+.+|++|.+
T Consensus 93 eidaas~~~Vd~iR-~l~~~~~--------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 93 EIDAASHGGVDDAR-ELRERAF--------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred EecccccCCHHHHH-HHHHHHH--------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 34332222333332 1221111 111335566888999975 36788888888876666776655543
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.63 E-value=0.0098 Score=72.53 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILD 239 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 239 (821)
..++|.+..++.+...+... .....++.++|..|+|||++|+.+.. .....-...+.+..+.-.....+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccchH-H
Confidence 46999999999999998752 11246788999999999999999987 22221223334444432211111 1
Q ss_pred HHHHHhCCc------hhHHHHHHHhCCCc-EEEEEecCCC--HHHHHHHHHhCCC
Q 045113 240 IIIKFLMPS------SRLIILHEYLMTKR-YLIVIDDVWS--IEVWDIIREILPD 285 (821)
Q Consensus 240 ~i~~~l~~~------~~~~~l~~~l~~kr-~LlVlDdv~~--~~~~~~l~~~l~~ 285 (821)
.+ ++.+ ++...+.+.++.++ .+|+||++.. ...++.+...+..
T Consensus 642 ~l---~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 642 RL---IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred Hh---cCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 11 1111 11234444444333 4999999975 3567777776643
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.63 E-value=0.0085 Score=72.34 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=41.1
Q ss_pred CCCeeechhhHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 166 NRDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
..+++|.+..+++|.+++.. +.....++.++|.+|+|||++|+.+.+ .....|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 34689999999999987753 222345899999999999999999998 444444
No 175
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.014 Score=67.41 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=72.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc------------------------cc
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY------------------------FD 221 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~------------------------F~ 221 (821)
-.+++|.+..++.+...+..+. -...+-++|..|+||||+|+.+.+.---... ..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 3579999999999999887653 2447889999999999999988762110000 01
Q ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEe
Q 045113 222 CHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITL 296 (821)
Q Consensus 222 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt 296 (821)
.++++.......+.++- +|++.+.. .-..+++-++|+|++.. ....+.+...+.....++++|++|
T Consensus 102 Dv~e~~a~s~~gvd~IR-eIie~~~~--------~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 102 DVLEMDAASHTGVDDIR-EIIESVRY--------RPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred ceEEecccccCCHHHHH-HHHHHHHh--------chhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 12333333222333321 22222111 00124556799999964 356777877777665667766555
No 176
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.013 Score=60.14 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=40.8
Q ss_pred HHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEcCCCCCHHHHH
Q 045113 181 DLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY----FDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 181 ~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~ 238 (821)
++|..+-..-.++.|+|.+|+||||||..++-....... -..++|++....++..++.
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 334444445789999999999999999988743222221 3689999988877765544
No 177
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.61 E-value=0.0073 Score=73.36 Aligned_cols=126 Identities=13% Similarity=0.202 Sum_probs=74.1
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILD 239 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 239 (821)
..++|-+..++.|...+... .....++-++|..|+|||+||+.+.+ .+-..-...+-+..+.-.....+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHH-
Confidence 57999999999998888632 22245677899999999999998886 221111223333333321111111
Q ss_pred HHHHHhCCc------hhHHHHHHHhCCCc-EEEEEecCCC--HHHHHHHHHhCCCCC-----------CCcEEEEEecc
Q 045113 240 IIIKFLMPS------SRLIILHEYLMTKR-YLIVIDDVWS--IEVWDIIREILPDNQ-----------NGSRVLITLAK 298 (821)
Q Consensus 240 ~i~~~l~~~------~~~~~l~~~l~~kr-~LlVlDdv~~--~~~~~~l~~~l~~~~-----------~gs~iiiTtr~ 298 (821)
.-++.+ ++...+.+.++.++ .+++||++.. .+.++.+...+..+. ..+-||+||..
T Consensus 586 ---~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred ---HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 111111 11345666666655 4889999974 356777777665431 34556666654
No 178
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.00061 Score=67.91 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=48.7
Q ss_pred hccCCceeEEEeCCCCCCcccccccCCCCceEEeecCC--CCc-cccHHHHhccccceEEecCCcccccc--hhhhccCc
Q 045113 514 CEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIP--SLK-SLPLSFFNYLLNLYTLDMPFSYIDHT--ADEFWKMK 588 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~~L~~L~~L~L~~~~l~~l--p~~i~~l~ 588 (821)
...+..|..|++.++.++.+- .+-.|++|++|.++.| .+. .++...- ++++|++|++++|++..+ -..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCccccccccchhhhhc
Confidence 344455555555555544322 1334667777777777 333 5555555 667777777777755432 11245566
Q ss_pred cCceeecCCcccC
Q 045113 589 KLRHLNFGSITLP 601 (821)
Q Consensus 589 ~L~~L~L~~~~~~ 601 (821)
+|..|++.+|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 6777777666553
No 179
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.56 E-value=0.0099 Score=60.49 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=40.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHH
Q 045113 179 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQI 237 (821)
Q Consensus 179 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 237 (821)
+-++|..+=..-.++-|+|.+|+|||++|.++.. .....-..++|++.. .++...+
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHH
Confidence 3444444444578999999999999999988886 333334678899887 5665544
No 180
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.55 E-value=0.013 Score=55.91 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=29.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY 233 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 233 (821)
++.|+|.+|+||||+++.+.. .....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 468999999999999999987 3333335677877765543
No 181
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.54 E-value=0.0061 Score=74.06 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=37.6
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998754 33446999999999999998887
No 182
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.53 E-value=0.0017 Score=63.04 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
-.-+.++|.+|+|||.||.++.+ +...+=..+.|+. ..+++..+-..-.. .....+.+.+.+ -=||||||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~------~~~L~~~l~~~~~~-~~~~~~~~~l~~-~dlLilDD 116 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT------ASDLLDELKQSRSD-GSYEELLKRLKR-VDLLILDD 116 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE------HHHHHHHHHCCHCC-TTHCHHHHHHHT-SSCEEEET
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee------cCceeccccccccc-cchhhhcCcccc-ccEecccc
Confidence 45699999999999999999987 3332222356664 44555554432211 113334444443 34778999
Q ss_pred CCC
Q 045113 270 VWS 272 (821)
Q Consensus 270 v~~ 272 (821)
+-.
T Consensus 117 lG~ 119 (178)
T PF01695_consen 117 LGY 119 (178)
T ss_dssp CTS
T ss_pred cce
Confidence 964
No 183
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.018 Score=66.79 Aligned_cols=120 Identities=10% Similarity=0.061 Sum_probs=69.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc----------------------------cc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV----------------------------KH 218 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~----------------------------~~ 218 (821)
.+++|-+..++.+...+..+. -...+-++|..|+||||+|+.+.+.--- ..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 468999999998888887653 2356889999999999999777652100 11
Q ss_pred ccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEe
Q 045113 219 YFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITL 296 (821)
Q Consensus 219 ~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt 296 (821)
+|+.+.+ .......+++|. ++.+.+. ..- ..+.+-++|+|++... ...+.+...+......+.+|++|
T Consensus 95 ~~n~~~~-d~~s~~~vd~Ir-~l~e~~~-------~~P-~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 95 SLNISEF-DAASNNSVDDIR-QLRENVR-------YGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCeEEe-cccccCCHHHHH-HHHHHHH-------hhh-hcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 2332222 111222233222 1221111 011 2345557899998653 56778888877655566655555
Q ss_pred c
Q 045113 297 A 297 (821)
Q Consensus 297 r 297 (821)
.
T Consensus 165 ~ 165 (620)
T PRK14954 165 T 165 (620)
T ss_pred C
Confidence 3
No 184
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.0071 Score=67.66 Aligned_cols=99 Identities=9% Similarity=0.166 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
...+.|+|..|+|||+|++++.+ ++...-..+++++ ...+...+...+... ....+++.+.. .-+|++||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~-~~~~f~~~~~~-~dvLiIDD 210 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG-EMQRFRQFYRN-VDALFIED 210 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc-hHHHHHHHccc-CCEEEEcc
Confidence 46788999999999999999998 4433223345553 334445555554432 23344444443 44888899
Q ss_pred CCCHH----HHHHHHHhCCC-CCCCcEEEEEecc
Q 045113 270 VWSIE----VWDIIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 270 v~~~~----~~~~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
+.... ..+.+...+.. ...|..||+||..
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 85421 12233333221 1135578888854
No 185
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.025 Score=66.04 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc---------------------ccceeEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH---------------------YFDCHAW 225 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~w 225 (821)
.+++|-+..++.+..++..+. -...+-++|..|+||||+|+.+.+.-.... +.| ++.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d-~~~ 93 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD-VIE 93 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe-EEE
Confidence 479999999999988887653 235678999999999999998876211000 111 222
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 226 VQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 226 v~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
+..+...++.++ ++|.+.+.. .-..+++-++|+|++.. ....+.+...+......+.+|++|.+
T Consensus 94 i~~~~~~~vd~i-r~ii~~~~~--------~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 94 MDAASHTSVDDA-REIIERVQF--------RPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred EeccccCCHHHH-HHHHHHHhh--------CcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 222222233322 222221111 01124567899999864 35677777777665556666666543
No 186
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.49 E-value=0.0024 Score=67.99 Aligned_cols=47 Identities=15% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCeeechhhHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 167 RDTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..++|.++.++++++++... +..-+++.++|.+|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999763 335689999999999999999999874
No 187
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.48 E-value=0.009 Score=60.00 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=40.5
Q ss_pred HHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHH
Q 045113 182 LLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILD 239 (821)
Q Consensus 182 ~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 239 (821)
+|..+=+.-+++-|+|.+|+|||++|..+.. .....-..++|++... ++...+.+
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH
Confidence 3444445578999999999999999988876 3334456899999876 66655544
No 188
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.021 Score=65.57 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=71.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc-------------------cceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY-------------------FDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 227 (821)
.+++|-+..++.|...+..+. -...+-++|..|+||||+|+.+.+.---... ...++++.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 468898888888888786542 2467778999999999999888863211100 01133343
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.+....+.++. .+.+.+.. .-..+++-++|+|++.. ...++.+...+........+|++|..
T Consensus 95 ~a~~~~Id~iR-~L~~~~~~--------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 95 GASNRGIDDAK-RLKEAIGY--------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred cccccCHHHHH-HHHHHHHh--------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 32222333221 12211110 11235667999999964 35677887777654445666665544
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.47 E-value=0.0069 Score=73.82 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=37.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|..+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 459999999999999998764 33445899999999999998887
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.46 E-value=0.012 Score=71.56 Aligned_cols=114 Identities=14% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 238 (821)
...++|.+..++.+...+... .....++.++|..|+|||++|+.+.+ ..-..-...+.+..+.-.. ....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~-~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFME-KHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhh-hhhH
Confidence 346899999999998888642 12245788999999999999999987 2211112234444332111 1111
Q ss_pred HHHHHHhCCc------hhHHHHHHHhCCC-cEEEEEecCCC--HHHHHHHHHhCCC
Q 045113 239 DIIIKFLMPS------SRLIILHEYLMTK-RYLIVIDDVWS--IEVWDIIREILPD 285 (821)
Q Consensus 239 ~~i~~~l~~~------~~~~~l~~~l~~k-r~LlVlDdv~~--~~~~~~l~~~l~~ 285 (821)
..+ ++.+ .+...+.+.++.+ .-+|+||++.. ...++.+...+..
T Consensus 644 ~~L---iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 644 SRL---VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred HHH---hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 111 1111 1122344444333 36999999973 4667777666643
No 191
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.45 E-value=0.0043 Score=61.08 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=62.4
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEc----CCCC-----CHHH----
Q 045113 170 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQE----PYTC-----YADQ---- 236 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~~-----~~~~---- 236 (821)
..+..+....++.|.. ..++.+.|.+|.|||.||.+..-+.-..+.|+..+++.- .+.. +..+
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 4566777888888883 569999999999999999877754334578888887742 1111 1110
Q ss_pred ---HHHHHHHHhCCchhHHHHHH----------HhCC---CcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEe
Q 045113 237 ---ILDIIIKFLMPSSRLIILHE----------YLMT---KRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITL 296 (821)
Q Consensus 237 ---~~~~i~~~l~~~~~~~~l~~----------~l~~---kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTt 296 (821)
-..+.+..+......+.+.+ ++++ ...+||+|++.+. .++..+ +...+.|||||++=
T Consensus 79 ~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~G 153 (205)
T PF02562_consen 79 YLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITG 153 (205)
T ss_dssp TTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE
T ss_pred HHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEec
Confidence 11122222221111222222 2344 3469999999653 455555 44456799999873
No 192
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.42 E-value=0.015 Score=61.94 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=47.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK----HYFDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
.+-++|..+=+.-+++-|+|.+|+|||+|+..++-..... ..=..++|++....|+.+++.+ +++.++.
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3444555554557899999999999999998766322221 1124789999999999888764 5565544
No 193
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.41 E-value=0.0022 Score=58.07 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 194
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.032 Score=62.66 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=71.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc---------------------ccccceeEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV---------------------KHYFDCHAW 225 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~w 225 (821)
.+++|.+..++.+...+..+. -...+-++|..|+||||+|+.+.+.--- ..+++ .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 478999999999999987653 2356788999999999999887652100 11222 222
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEec
Q 045113 226 VQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 226 v~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
+.......+.++. ++.+.+. ..-..+.+-++|+|++... ...+.+...+........+|++|.
T Consensus 95 i~g~~~~gid~ir-~i~~~l~--------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 95 IDGASHRGIEDIR-QINETVL--------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred eeccccCCHHHHH-HHHHHHH--------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 2222222233222 2222111 0112356678999998643 456777777766555666766664
No 195
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.40 E-value=0.01 Score=65.89 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=40.0
Q ss_pred CCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 167 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
.++.|.+..+++|.+.+.-. -...+-+.++|.+|+|||++|+++.+ +....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 46789999999998877521 12345678999999999999999998 454444
No 196
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.032 Score=63.12 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=71.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcc-----c--------------ccccceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNY-----V--------------KHYFDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~-----~--------------~~~F~~~~wv~ 227 (821)
.+++|-+...+.+...+..+. -..++-++|..|+||||+|+.+..... . .+.|...+++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 468899999999999997753 245667899999999999988765210 0 01122234444
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEec
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
.+....+.++ +.|.+.+.. .-..+++-++|+|++.. ....+.+...+........+|++|.
T Consensus 95 aas~~gvd~i-r~I~~~~~~--------~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 95 AASNRGIDDI-RALRDAVSY--------TPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred CccCCCHHHH-HHHHHHHHh--------CcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 3333333322 112111110 01235667999999864 3566777777766555566655553
No 197
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.40 E-value=0.01 Score=63.63 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=62.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc-cce-eEEEEcCCC-CCHHHHHHHHHHHhCCch--
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY-FDC-HAWVQEPYT-CYADQILDIIIKFLMPSS-- 249 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~-- 249 (821)
-..++++.+.-- ..-+.+.|+|.+|+|||||++.+.+ .+... =+. ++|+.+.+. -.+.++.+.+...+....
T Consensus 119 ~~~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 344567766531 1235679999999999999999887 34332 233 467677665 467888888877666532
Q ss_pred h-----------HHHHHHHh--CCCcEEEEEecCCC
Q 045113 250 R-----------LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 250 ~-----------~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
. ...+.+++ ++++++||+|++..
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 11222222 58999999999953
No 198
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.39 E-value=0.029 Score=60.62 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=82.1
Q ss_pred CeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc---------------------ccceeEEE
Q 045113 168 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH---------------------YFDCHAWV 226 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~wv 226 (821)
.++|-+....++..+......-...+-++|++|+||||+|..+.+. +-. ....+..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 4677788888888888754433446999999999999998888763 211 22456666
Q ss_pred EcCCCCC---HHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 227 QEPYTCY---ADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 227 ~~s~~~~---~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
..+.... ..+..+++.+...... ..++.-++++|+++.. +.-+.+...+......+.+|++|...
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~--------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESP--------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCC--------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 6666555 3444445444433211 1357789999999764 45677777777777788888888743
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.37 E-value=0.0066 Score=73.49 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=38.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 479999999999999997764 33456999999999999999887
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.36 E-value=0.033 Score=57.97 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=34.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHH
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 238 (821)
-++++..++..+ .-|-+.|.+|+|||++|+.+.+ .... ..+.++.+...+..+++
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 344455555443 3566899999999999999986 3322 23455555555544443
No 201
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.015 Score=65.59 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=67.2
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC--CCHHHHHHHH
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT--CYADQILDII 241 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i 241 (821)
..+.+++-....+++..+....+--.-.-|-|.|..|+|||+||+++++... +.+.-.+.+|+++.- -..+.+++.+
T Consensus 405 ~~e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l 483 (952)
T KOG0735|consen 405 PFEHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL 483 (952)
T ss_pred cCCCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH
Confidence 3446677666666666665555444466789999999999999999998544 445555666766643 3455555544
Q ss_pred HHHhCCchhHHHHHHHhCCCcEEEEEecCC
Q 045113 242 IKFLMPSSRLIILHEYLMTKRYLIVIDDVW 271 (821)
Q Consensus 242 ~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~ 271 (821)
. ..+.+.+...+.+|||||++
T Consensus 484 ~---------~vfse~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 484 N---------NVFSEALWYAPSIIVLDDLD 504 (952)
T ss_pred H---------HHHHHHHhhCCcEEEEcchh
Confidence 3 23445677899999999995
No 202
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.017 Score=62.37 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=72.7
Q ss_pred CCCCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIII 242 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 242 (821)
.+..++||+.++..+.+|+... .....-+-|.|.+|.|||.+...++.+..-...=-.++.+....--....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 3567999999999999999874 34577899999999999999999998532221111334444433344566777776
Q ss_pred HHh----CCc-hh---HHHHHHHhCC--CcEEEEEecCC
Q 045113 243 KFL----MPS-SR---LIILHEYLMT--KRYLIVIDDVW 271 (821)
Q Consensus 243 ~~l----~~~-~~---~~~l~~~l~~--kr~LlVlDdv~ 271 (821)
..+ ..+ .+ ...+.+...+ ..+|+|+|.++
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhh
Confidence 666 222 12 4556666654 35899999985
No 203
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.32 E-value=0.021 Score=65.25 Aligned_cols=100 Identities=11% Similarity=0.186 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYF--DCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVI 267 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVl 267 (821)
...+.|+|..|+|||.|++++++ .....+ ..+++++ ..++..++...+.... ...+++.+.+ -=+|||
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~~-~~~f~~~y~~-~DLLlI 383 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDGK-GDSFRRRYRE-MDILLV 383 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhcc-HHHHHHHhhc-CCEEEE
Confidence 45689999999999999999998 444332 2345553 3444445544433211 2334444443 347889
Q ss_pred ecCCCH---HHH-HHHHHhCCC-CCCCcEEEEEecch
Q 045113 268 DDVWSI---EVW-DIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 268 Ddv~~~---~~~-~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
||+... ..| +.+...+.. ...|..|||||+..
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999642 223 223333221 22356688888763
No 204
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00048 Score=68.69 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=27.8
Q ss_pred CCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcc
Q 045113 490 PHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKS 555 (821)
Q Consensus 490 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~ 555 (821)
.+++.|.+.|+...+ ..++.+|+.|+||.|+-|.|+.+-+ +..|++|+.|.|+.|.|..
T Consensus 19 ~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc
Confidence 344445555444431 2344555555555555555544422 4444455555555544443
No 205
>PRK07261 topology modulation protein; Provisional
Probab=96.32 E-value=0.0066 Score=58.71 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=39.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVK-HYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDV 270 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv 270 (821)
.|.|+|++|+||||||+.+.....+. -+.|...|-..-...+..+. ...+.+.+.+.+ .|+|+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--wIidg~ 66 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDM-------------IADISNFLLKHD--WIIDGN 66 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHH-------------HHHHHHHHhCCC--EEEcCc
Confidence 58999999999999999988632221 23455555322122222222 233444555555 678888
Q ss_pred CCH
Q 045113 271 WSI 273 (821)
Q Consensus 271 ~~~ 273 (821)
...
T Consensus 67 ~~~ 69 (171)
T PRK07261 67 YSW 69 (171)
T ss_pred chh
Confidence 543
No 206
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30 E-value=0.018 Score=56.14 Aligned_cols=111 Identities=8% Similarity=0.060 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc-ccc--cc------------e-eEEEEcCCCCCH--HHHHHHHHHHhCCchh-
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV-KHY--FD------------C-HAWVQEPYTCYA--DQILDIIIKFLMPSSR- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~--F~------------~-~~wv~~s~~~~~--~~~~~~i~~~l~~~~~- 250 (821)
-.+++|+|..|.|||||++.+...... .+. |+ . +.++ .+.+.. ..+.+.+...+...+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~--~q~~~~~~~tv~~~i~~~LS~G~~q 105 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL--NQRPYLFDTTLRNNLGRRFSGGERQ 105 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE--ccCCeeecccHHHhhcccCCHHHHH
Confidence 458999999999999999999874221 110 11 1 1122 222111 1233333223332222
Q ss_pred HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 251 LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 251 ~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
.-.+.+.+-.++-++++|+.... ...+.+...+.....+..||++|.+....
T Consensus 106 rv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 44566777788889999998643 22222222222112367788888776554
No 207
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00051 Score=68.54 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=83.0
Q ss_pred ccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccch--hhhccCccCce
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTA--DEFWKMKKLRH 592 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~l~~L~~ 592 (821)
+.+.+.+.|++.||.++.+. -+.+++.|..|.|+-|.|+.|- .+. .|++|+.|.|+.|.|..+- ..+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~-rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQ-RCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHH-HHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34567888999999988553 2457899999999999999886 566 8999999999999888773 46789999999
Q ss_pred eecCCcccCCCCCC-----CcCCCCCcceecccc
Q 045113 593 LNFGSITLPAHPGN-----YCGSLENLNFISALY 621 (821)
Q Consensus 593 L~L~~~~~~~~~p~-----~i~~l~~L~~L~~~~ 621 (821)
|-|..|...+.-+. .+.-|++|+.|+-..
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 99988887665553 256678888887544
No 208
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.26 E-value=0.019 Score=61.65 Aligned_cols=69 Identities=17% Similarity=0.063 Sum_probs=47.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEcCCCCCHHHHHHHHHHHhCCc
Q 045113 179 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK----HYFDCHAWVQEPYTCYADQILDIIIKFLMPS 248 (821)
Q Consensus 179 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 248 (821)
+-++|..+=+.-+++-|+|.+|+|||+|+..++-..... +.-..++|++....|+.+++.+ +++.++..
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 334455554457888899999999999998876322221 1224789999999999888765 55655543
No 209
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.24 E-value=0.012 Score=58.43 Aligned_cols=106 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHH--hCCch-h-HHHHHHHhCCCcEEE
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKF--LMPSS-R-LIILHEYLMTKRYLI 265 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~--l~~~~-~-~~~l~~~l~~kr~Ll 265 (821)
.+|.|+|..|+||||++..+.. .+.......+++-... .+.... ...+..+ ++... . .+.++..+...+=.|
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHES-KRSLINQREVGLDTLSFENALKAALRQDPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccC-ccceeeecccCCCccCHHHHHHHHhcCCcCEE
Confidence 3789999999999999998776 3333334444432211 110000 0011111 11111 1 566777777777899
Q ss_pred EEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 266 VIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 266 VlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
++|.+.+.+.+..+.... ..|-.|+.|+-..++.
T Consensus 79 i~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 79 LVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 999998877665544332 2355688787665554
No 210
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.24 E-value=0.017 Score=69.19 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCCeeechhhHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDII 241 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 241 (821)
+.+.+|.+..+++|+++|.. +.....++.++|.+|+||||+|+.+.. .....|-. +..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccch
Confidence 45699999999999998874 123456899999999999999999997 34434422 2333333333332221
Q ss_pred HHHhCCchh--HHHHHHHhCCCcEEEEEecCCC
Q 045113 242 IKFLMPSSR--LIILHEYLMTKRYLIVIDDVWS 272 (821)
Q Consensus 242 ~~~l~~~~~--~~~l~~~l~~kr~LlVlDdv~~ 272 (821)
....+.... .+.+.+ .....-+++||.++.
T Consensus 396 ~~~~g~~~G~~~~~l~~-~~~~~~villDEidk 427 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAK-VGVKNPLFLLDEIDK 427 (784)
T ss_pred hccCCCCCcHHHHHHHh-cCCCCCEEEEEChhh
Confidence 111111111 222222 222445789999964
No 211
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.23 E-value=0.027 Score=62.18 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=62.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDV 270 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv 270 (821)
++.|.|+-++||||+++.+... .... .+++...... +-.++ .+... .+.+.-..++..|+||.|
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~~~---------~~~~~~~~~~~yifLDEI 103 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDLLR---------AYIELKEREKSYIFLDEI 103 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHHHH---------HHHHhhccCCceEEEecc
Confidence 9999999999999999777763 2222 4555433221 11111 11111 111111228899999999
Q ss_pred CCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 271 WSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 271 ~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
....+|+.....+.+.++. +|++|+-+....
T Consensus 104 q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll 134 (398)
T COG1373 104 QNVPDWERALKYLYDRGNL-DVLITGSSSSLL 134 (398)
T ss_pred cCchhHHHHHHHHHccccc-eEEEECCchhhh
Confidence 9999999888888877766 899998877665
No 212
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.22 E-value=0.06 Score=51.49 Aligned_cols=120 Identities=20% Similarity=0.164 Sum_probs=73.4
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC----cccc--------------cccceeEEEEcCCC-
Q 045113 171 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG----NYVK--------------HYFDCHAWVQEPYT- 231 (821)
Q Consensus 171 Gr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~----~~~~--------------~~F~~~~wv~~s~~- 231 (821)
|-+...+.+.+.+..+. -...+-++|..|+||+|+|..+.+. .... .......|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 34555666666665542 3457889999999999998776542 1110 22334555554433
Q ss_pred --CCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 232 --CYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 232 --~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
..++++. ++...+... -..+++=.+|+||+.. .+.++.+...+.....++++|++|++..
T Consensus 80 ~~i~i~~ir-~i~~~~~~~--------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLS--------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS---------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred chhhHHHHH-HHHHHHHHH--------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 4454443 444333321 1124667899999975 4678888888888778899999888664
No 213
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.22 E-value=0.0052 Score=57.11 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=62.2
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEcCCCCCHHHHHHHHHHHhCCc
Q 045113 170 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-KHYFDCHAWVQEPYTCYADQILDIIIKFLMPS 248 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 248 (821)
||....++++.+.+..-...-..|-|+|..|+||+++|+.++..... ...|..+- .... . .+++++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~~-~-----~~~l~~---- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CASL-P-----AELLEQ---- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHCT-C-----HHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhhC-c-----HHHHHH----
Confidence 57788888888888764333567889999999999999999974222 12332111 1111 1 222222
Q ss_pred hhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCC-CCCCcEEEEEecch
Q 045113 249 SRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 249 ~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
.+.--|+++|+.. .+....+...+.. .....|+|.||+..
T Consensus 68 -----------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 -----------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1445688999964 3444455444442 25568999998743
No 214
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.21 E-value=0.01 Score=70.40 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.+++++++.|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998753 23445899999999999999886
No 215
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.041 Score=63.91 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=72.9
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc--------------------cccceeEE
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK--------------------HYFDCHAW 225 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~w 225 (821)
-.+++|.+...+.+...+..+. -...+-++|..|+||||+|+.+.+.---. .++| ++.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~e 92 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFE 92 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eee
Confidence 3479999999999999887653 23567889999999999998887631000 0112 122
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEe-cchhhh
Q 045113 226 VQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITL-AKIDTV 302 (821)
Q Consensus 226 v~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v~ 302 (821)
+.......++++ ++|.+.+.. .-..+++-++|+|++.. ....+.+...+........+|++| ....+.
T Consensus 93 id~~s~~~v~~i-r~l~~~~~~--------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 93 IDGASNTGVDDI-RELRENVKY--------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred eeccCccCHHHH-HHHHHHHHh--------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 222222233332 222222110 01124555788999964 356777777776655566666554 444443
No 216
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.18 E-value=0.032 Score=59.91 Aligned_cols=68 Identities=18% Similarity=0.112 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccc----ceeEEEEcCCCCCHHHHHHHHHHHhC
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF----DCHAWVQEPYTCYADQILDIIIKFLM 246 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l~ 246 (821)
.+-++|..+=+.-.++-|+|.+|+|||++|..++........+ ..++||+....|+...+.+ +++.++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 3344555554557899999999999999998887532221111 4799999999888877654 344443
No 217
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.14 E-value=0.039 Score=56.15 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccc------ceeEEEEcCCCCCHHHHH
Q 045113 179 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF------DCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 179 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~s~~~~~~~~~ 238 (821)
+-++|..+=..-.++.|+|.+|+|||+||..+... ....- ..++|++....++...+.
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 33444445455789999999999999999988752 22223 467899888877765544
No 218
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.11 E-value=0.028 Score=59.92 Aligned_cols=70 Identities=16% Similarity=-0.001 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 177 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH----YFDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 177 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
+.+-++|..+=+.-.++.|+|.+|+|||||+..++....... .-..++|++....++..++ .++++.++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 344455655545688999999999999999988875222211 1236799998888887764 344555443
No 219
>PRK07667 uridine kinase; Provisional
Probab=96.11 E-value=0.01 Score=58.68 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=32.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+.|.+.+..-.+...+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677788877666679999999999999999999987
No 220
>PRK06696 uridine kinase; Validated
Probab=96.10 E-value=0.0069 Score=61.46 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=35.2
Q ss_pred echhhHHHHHHHHhc-CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 171 GLDDRMEELLDLLIE-GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 171 Gr~~~~~~i~~~L~~-~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|++-+++|.+.+.. ..+...+|+|.|.+|+||||||+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 366777888888865 344689999999999999999999987
No 221
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.08 E-value=0.027 Score=60.53 Aligned_cols=70 Identities=14% Similarity=0.029 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 177 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH----YFDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 177 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
..+-++|..+=..-.++-|+|.+|+|||+||..++-...... .=..++|++....|+.+++. +|++.++.
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 344455555545578899999999999999987774322211 11379999999999888764 45665544
No 222
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.051 Score=63.39 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=76.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcc---------------------cccccceeEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNY---------------------VKHYFDCHAW 225 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~~~~w 225 (821)
.+++|-+...+.+..++..+. -...+-++|..|+||||+|+.+...-. ...+|+. ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 468999999999999997753 245678999999999999887665210 1124543 23
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEe-cchhhh
Q 045113 226 VQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITL-AKIDTV 302 (821)
Q Consensus 226 v~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTt-r~~~v~ 302 (821)
+..+...++.++.. +++++... -..+++-++|+|++.. ...++.+...+.....++.+|++| +...+.
T Consensus 95 ld~~~~~~vd~Ir~-li~~~~~~--------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 95 LDAASNNSVDDIRN-LIEQVRIP--------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred ecccccCCHHHHHH-HHHHHhhC--------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 33333333433332 22221110 0123555889999864 356888888887665667765544 444444
No 223
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.027 Score=61.26 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=61.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEE
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVI 267 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVl 267 (821)
.....+-|||..|.|||.|++++.+ ....+......+.++ .+....+++..+.. ...+..++.. .-=++++
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~-~~~~~Fk~~y--~~dlllI 181 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD-NEMEKFKEKY--SLDLLLI 181 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh-hhHHHHHHhh--ccCeeee
Confidence 3578999999999999999999999 666655533333333 23333333333332 1245566666 4448899
Q ss_pred ecCCCH---HH-HHHHHHhCCC-CCCCcEEEEEecch
Q 045113 268 DDVWSI---EV-WDIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 268 Ddv~~~---~~-~~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
||++-- +. -+++...+.. ...|-.||+|++..
T Consensus 182 DDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 182 DDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred chHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 999642 22 2333333332 22344899998654
No 224
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.07 E-value=0.0058 Score=68.45 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=39.7
Q ss_pred CeeechhhHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 168 DTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999943 244578999999999999999999997
No 225
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.03 E-value=0.028 Score=57.49 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=77.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEE-EEcCCCCCHHHHHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAW-VQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~~i~~~ 244 (821)
..+++|-+..+.-+.+.+... .....-.+|++|.|||+-|.++...---.+.|.+++. .++|..-.+.-+-..+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki--- 109 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI--- 109 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh---
Confidence 457899999999998888874 3788899999999999988777652111456765543 3455443332111000
Q ss_pred hCCchhHHHHHHHh------CCCc-EEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 245 LMPSSRLIILHEYL------MTKR-YLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 245 l~~~~~~~~l~~~l------~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
. +...+.-.. ..++ -.+|||+++.. +.|..++..+.+....++-|..+..
T Consensus 110 -k---~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 110 -K---NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred -c---CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 0 011111111 1133 37899999865 7899999988876666665444433
No 226
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.073 Score=55.78 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCCCCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC
Q 045113 162 LSFKNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY 230 (821)
Q Consensus 162 ~~~~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 230 (821)
|.+.-.++-|.++.+++|.+...-+ =...+=|-++|.+|.|||-||++|.+ +....|= .|..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtFI-----rvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATFI-----RVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceEE-----Eecc
Confidence 3344457889999999998887653 13467788999999999999999999 5555552 2221
Q ss_pred CCCHHHHHHHHHHHhCCchh-HHHHHHHhC-CCcEEEEEecCCCH-------------HH---HHHHHHhCCC--CCCCc
Q 045113 231 TCYADQILDIIIKFLMPSSR-LIILHEYLM-TKRYLIVIDDVWSI-------------EV---WDIIREILPD--NQNGS 290 (821)
Q Consensus 231 ~~~~~~~~~~i~~~l~~~~~-~~~l~~~l~-~kr~LlVlDdv~~~-------------~~---~~~l~~~l~~--~~~gs 290 (821)
+ +-+++-|. .... ...+.+.-+ ..+..|.+|.++.. +. .-++...+.. ....-
T Consensus 219 S---ElVqKYiG----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 219 S---ELVQKYIG----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred H---HHHHHHhc----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 1 11222211 1111 333444443 57899999998621 11 2233333332 23357
Q ss_pred EEEEEecchhhh--cccc
Q 045113 291 RVLITLAKIDTV--TLFQ 306 (821)
Q Consensus 291 ~iiiTtr~~~v~--~lf~ 306 (821)
|||..|...++. .|+.
T Consensus 292 KVI~ATNR~D~LDPALLR 309 (406)
T COG1222 292 KVIMATNRPDILDPALLR 309 (406)
T ss_pred EEEEecCCccccChhhcC
Confidence 999999988888 4555
No 227
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.00 E-value=0.031 Score=56.49 Aligned_cols=54 Identities=17% Similarity=0.042 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY 233 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 233 (821)
.+-++|..+=..-.++.|.|.+|+||||+|.++.. .....=..++|++....+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH
Confidence 34444544444578999999999999999998876 3323334677887665554
No 228
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.99 E-value=0.019 Score=68.23 Aligned_cols=109 Identities=9% Similarity=0.158 Sum_probs=65.9
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILD 239 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 239 (821)
..++|-+..++.|.+.+... ......+-++|.+|+|||++|+.+.. .... ..+.+..+.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCC---CcEEeechhhcccc----
Confidence 45899999999999988731 22356788999999999999999987 3322 22333333221111
Q ss_pred HHHHHhCCch------hHHHHHHHhCC-CcEEEEEecCCCH--HHHHHHHHhCC
Q 045113 240 IIIKFLMPSS------RLIILHEYLMT-KRYLIVIDDVWSI--EVWDIIREILP 284 (821)
Q Consensus 240 ~i~~~l~~~~------~~~~l~~~l~~-kr~LlVlDdv~~~--~~~~~l~~~l~ 284 (821)
.+.+-++.+. ....+.+.++. ...+|+||++... +.++.+...+.
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred cHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1111112111 12344455544 3469999999754 55677766654
No 229
>CHL00176 ftsH cell division protein; Validated
Probab=95.97 E-value=0.023 Score=66.25 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=34.9
Q ss_pred CCCeeechhhHHHHHHHH---hcCC-------CCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 166 NRDTVGLDDRMEELLDLL---IEGP-------PQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L---~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|.++.++++.+.+ ..+. ...+-|.++|.+|+|||+||+++.+.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346889887777665544 3321 12456889999999999999999883
No 230
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.95 E-value=0.041 Score=55.90 Aligned_cols=110 Identities=13% Similarity=0.045 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-----CCCHHHHHHHHHHHhCCchh--------------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-----TCYADQILDIIIKFLMPSSR-------------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~-------------- 250 (821)
-.++|+||..|.||||+++.+.. .-.--...++..-.+ .....+-..++++.++...+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 56999999999999999999997 222222333332111 22234456677777776643
Q ss_pred -HHHHHHHhCCCcEEEEEecCCCHHHH---HHHHHhCC--CCCCCcEEEEEecchhhh
Q 045113 251 -LIILHEYLMTKRYLIVIDDVWSIEVW---DIIREILP--DNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 251 -~~~l~~~l~~kr~LlVlDdv~~~~~~---~~l~~~l~--~~~~gs~iiiTtr~~~v~ 302 (821)
.-.+.+.|.-++-+||.|..-+..+. ..+...+. ....|-..+..|-+-.|+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhh
Confidence 45677888899999999997543211 22222222 122345566666665555
No 231
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.95 E-value=0.038 Score=53.95 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=62.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---cCCCCCHHHHHH------HHHHHhCCchh----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQ---EPYTCYADQILD------IIIKFLMPSSR---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~---------- 250 (821)
-.+++|+|..|.|||||++.+.... ......+++. +. ..+...... ++++.++....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4599999999999999999999732 2233444432 22 112222111 13444443211
Q ss_pred ----HHHHHHHhCCCcEEEEEecCCC---HHHHHHHHHhCCCC-CC-CcEEEEEecchhhh
Q 045113 251 ----LIILHEYLMTKRYLIVIDDVWS---IEVWDIIREILPDN-QN-GSRVLITLAKIDTV 302 (821)
Q Consensus 251 ----~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~l~~~-~~-gs~iiiTtr~~~v~ 302 (821)
.-.+.+.+...+-++++|+.-. ....+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3455667778889999999853 23333333333321 12 56788888775543
No 232
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.067 Score=62.59 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=72.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCc---cc--------------ccccceeEEEEcC
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGN---YV--------------KHYFDCHAWVQEP 229 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~---~~--------------~~~F~~~~wv~~s 229 (821)
.+++|.+..++.+...+..+. -...+-++|..|+||||+|+.+.+.- .. ..+++ ++++...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaa 95 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAA 95 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEecc
Confidence 468999999999999987653 24567789999999999998886521 00 00111 1222221
Q ss_pred CCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEE-EEecchhhh
Q 045113 230 YTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVL-ITLAKIDTV 302 (821)
Q Consensus 230 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ii-iTtr~~~v~ 302 (821)
...++.++ +++.+.+.. .-..+++-++|+|++.. ...++.+...+........+| +||+...+.
T Consensus 96 sn~~vd~I-ReLie~~~~--------~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 96 SNNGVDEI-RELIENVKN--------LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred ccCCHHHH-HHHHHHHHh--------chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 11222221 122221110 01235666899999964 357888887777655555555 444444443
No 233
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0065 Score=56.06 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.--|.|.||+|+||||+++.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 34689999999999999999997
No 234
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.92 E-value=0.076 Score=60.30 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=73.6
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCc---ccc-----------------cccceeEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGN---YVK-----------------HYFDCHAWV 226 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~---~~~-----------------~~F~~~~wv 226 (821)
.+++|-+...+.+...+..+. -..++-++|..|+||||+|+.+.+.- .-. .|++ ++.+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~el 91 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEM 91 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEe
Confidence 469999999999998887653 24466889999999999998766521 000 1122 2333
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
..+....+.++...+ ..... .-..+++-++|+|++... +..+.+...+....+.+++|++|.+.
T Consensus 92 daas~~gId~IReli-e~~~~--------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 92 DAASNRGIDDIRELI-EQTKY--------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred ccccccCHHHHHHHH-HHHhh--------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 333222343333222 21100 001245668899999643 56777777776656667777776553
No 235
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.89 E-value=0.041 Score=51.51 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE-------cCCCCCHHHHHHHHHHHhCCchh-HHHHHHHhCCC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQ-------EPYTCYADQILDIIIKFLMPSSR-LIILHEYLMTK 261 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-------~s~~~~~~~~~~~i~~~l~~~~~-~~~l~~~l~~k 261 (821)
-.+++|+|..|.|||||++.+..... .....+|+. +.+ +..... .-.+.+.+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~~i~~~~~--------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTVKIGYFEQ--------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeEEEEEEcc--------------CCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999987422 122333321 111 221111 33455667778
Q ss_pred cEEEEEecCCC---HHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 262 RYLIVIDDVWS---IEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 262 r~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
+-++++|+... ......+...+... +..||++|.+....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 88999999853 33333333333322 24688888765543
No 236
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.088 Score=57.73 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCCeeechh---hHHHHHHHHhcCC-------CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHH
Q 045113 166 NRDTVGLDD---RMEELLDLLIEGP-------PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYAD 235 (821)
Q Consensus 166 ~~~~vGr~~---~~~~i~~~L~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 235 (821)
-.++-|.|+ ++++|+++|.++. .=.+=|-++|++|.|||-||++|.-...|- | |......|+.-
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm 376 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEM 376 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhh
Confidence 456778765 5677888898752 125678899999999999999999844332 2 12222233211
Q ss_pred HHHHHHHHHhCCchhHHHHHHHh----CCCcEEEEEecCCCH-------------HHHHHHHHhCCCCCC--CcEEEEEe
Q 045113 236 QILDIIIKFLMPSSRLIILHEYL----MTKRYLIVIDDVWSI-------------EVWDIIREILPDNQN--GSRVLITL 296 (821)
Q Consensus 236 ~~~~~i~~~l~~~~~~~~l~~~l----~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~~~~--gs~iiiTt 296 (821)
.-.. .+.++++.. +.-++.|.+|.++.. ..++++...+....+ |--||-.|
T Consensus 377 ------~VGv----GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 377 ------FVGV----GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred ------hhcc----cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 1111 133444333 357899999998631 235666666664433 33333345
Q ss_pred cchhhh--cccc---cccCCc-CCCCccchHHHHHHHcCCchHH
Q 045113 297 AKIDTV--TLFQ---FENGQN-IRLDLVPTGGPLRVTYQGWPFH 334 (821)
Q Consensus 297 r~~~v~--~lf~---~~~~~~-~~~~~~~~~~~i~~~c~glPLa 334 (821)
...+.. .|.+ |..... +.|+...-.+-+--+..+.|++
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~ 490 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD 490 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc
Confidence 444444 3333 443332 4455554444444455556554
No 237
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.87 E-value=0.024 Score=65.63 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=40.1
Q ss_pred CCCCeeechhhHHHHHHHHhcCC---CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGP---PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~---~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++|-+..++++..++.... ...+++.|+|.+|+||||+++.+..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34579999999999999987642 2356899999999999999999997
No 238
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.87 E-value=0.055 Score=57.96 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=46.6
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 179 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH----YFDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 179 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
+-++|..+=..-.++-|+|.+|+||||++..++....... .=..++||+....|+.+++. ++++.++.
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3445555544578999999999999999988875322211 11379999999988887765 34454443
No 239
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.082 Score=61.68 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=71.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccc---------------------ceeEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF---------------------DCHAW 225 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~~w 225 (821)
.+++|.+...+.+..++..+. -...+-++|..|+||||+|+.+.+.---.... ..++.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 468999999999998888653 23567889999999999999987631110000 01122
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 226 VQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 226 v~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
+.......++.+ +++++.+.. .-..+++-++|+|++.. ...++.+...+........+|++|.+
T Consensus 95 i~~~~~~~vd~I-Reii~~a~~--------~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 95 IDAASNTGVDNI-RELIERAQF--------APVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred EeccccCCHHHH-HHHHHHHhh--------ChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 222212222222 222222110 01124556889999974 35688888877765555655555543
No 240
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.11 Score=59.90 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=73.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc--------------------cccceeEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK--------------------HYFDCHAWV 226 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv 226 (821)
.+++|-+..++.+...+..+. -...+-++|..|+||||+|+.+.+.---. .+++. +++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~i 93 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEI 93 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEe
Confidence 468999999999999997653 24568899999999999999987731100 12322 222
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
.......+.++. ++.+.+. ..-..+++-++|+|++.. ...++.+...+........+|.+|..
T Consensus 94 dgas~~~vddIr-~l~e~~~--------~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 94 DGASNTSVQDVR-QIKEEIM--------FPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred cCcccCCHHHHH-HHHHHHH--------hchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 222222233222 1111110 001235666899999864 35678888887766666666666543
No 241
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.82 E-value=0.09 Score=54.60 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=70.1
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCc--h---
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS--S--- 249 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~--- 249 (821)
..+.++..|... .+..-++|+|..|.|||||.+.+... +.. ....+++.- +.....+-..+++.....- .
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~~-~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LST-GISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cCC-CCceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence 345555555533 23678999999999999999999973 322 222333210 0000000112222222111 0
Q ss_pred ---h-------HHHHHHHhC-CCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 250 ---R-------LIILHEYLM-TKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 250 ---~-------~~~l~~~l~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
+ +..+...+. ..+=++++|.+-..+.+..+...+. .|..||+||....+.
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 0 333444443 5788999999988777777766653 477899999987764
No 242
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.79 E-value=0.075 Score=57.40 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHhcCC-CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 172 LDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 172 r~~~~~~i~~~L~~~~-~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
|+.-.+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455677888887754 6789999999999999999999987
No 243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.77 E-value=0.033 Score=67.09 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=38.1
Q ss_pred CCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.++.|.+..+++|.+++... -...+-|.++|.+|+||||||+.+.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 3446889999999998887431 12346688999999999999999998
No 244
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.031 Score=62.11 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=63.5
Q ss_pred CCCCCeeechhhHHHHHHHHhcC---C-------CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEG---P-------PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY 233 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~---~-------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 233 (821)
+.-.++-|.|..+.++.+++..- + ...+=|-++|.+|.|||.||+++.+ +..-.| +.++..
T Consensus 187 v~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp-- 257 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP-- 257 (802)
T ss_pred cchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch--
Confidence 34457889999999988887641 1 2356688999999999999999999 444333 333322
Q ss_pred HHHHHHHHHHHhCCchh--HHHHH-HHhCCCcEEEEEecCC
Q 045113 234 ADQILDIIIKFLMPSSR--LIILH-EYLMTKRYLIVIDDVW 271 (821)
Q Consensus 234 ~~~~~~~i~~~l~~~~~--~~~l~-~~l~~kr~LlVlDdv~ 271 (821)
+|+....+..+ ..++. +.-..-++++++|+++
T Consensus 258 ------eivSGvSGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ------EIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ------hhhcccCcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 44444444433 33444 3345689999999997
No 245
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.76 E-value=0.0057 Score=61.15 Aligned_cols=84 Identities=20% Similarity=0.180 Sum_probs=61.2
Q ss_pred hhccCCceeEEEeCCCC--CC-cccccccCCCCceEEeecCCCCc---cccHHHHhccccceEEecCCcccccc----hh
Q 045113 513 ICEMYKLLRVLDLGSLV--LN-QYPSEIENLSLLRYLKLNIPSLK---SLPLSFFNYLLNLYTLDMPFSYIDHT----AD 582 (821)
Q Consensus 513 ~~~~~~~Lr~L~L~~~~--l~-~lp~~i~~l~~Lr~L~L~~~~i~---~lp~~i~~~L~~L~~L~L~~~~l~~l----p~ 582 (821)
-|..+++|+.|+++.|. +. .++-...++++|++|++++|+|. +++ .+. .+.+|.+|++.+|....+ -.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~-~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLK-ELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhh-hhcchhhhhcccCCccccccHHHH
Confidence 46678899999999994 33 56555667799999999999876 333 445 788899999999955544 12
Q ss_pred hhccCccCceeecCCc
Q 045113 583 EFWKMKKLRHLNFGSI 598 (821)
Q Consensus 583 ~i~~l~~L~~L~L~~~ 598 (821)
.+.-+++|++||-...
T Consensus 138 vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHhhhhcccccccc
Confidence 3455788888865443
No 246
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.73 E-value=0.054 Score=62.08 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=35.8
Q ss_pred CCCCCeeechhhHHHHHHHHh---cC-------CCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 164 FKNRDTVGLDDRMEELLDLLI---EG-------PPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~---~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
+.-.+++|.+..++++.+.+. .. ....+-+-++|.+|+|||+||+.+.+.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 334578898887776655443 21 122445889999999999999999983
No 247
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.73 E-value=0.046 Score=52.95 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=59.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC-ccc--ccc---cc--eeEEEEcCCCCCHHHHHHHHHHHhCCch---h--------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG-NYV--KHY---FD--CHAWVQEPYTCYADQILDIIIKFLMPSS---R-------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~-~~~--~~~---F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~---~-------- 250 (821)
-.+++|+|..|+|||||.+.+..+ -++ ... |. .+.|+ .+ .+.++.+.... +
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468999999999999999998632 111 111 11 12332 22 34455554321 1
Q ss_pred ----HHHHHHHhCCC--cEEEEEecCCC---HHHHHHHHHhCCC-CCCCcEEEEEecchhhhc
Q 045113 251 ----LIILHEYLMTK--RYLIVIDDVWS---IEVWDIIREILPD-NQNGSRVLITLAKIDTVT 303 (821)
Q Consensus 251 ----~~~l~~~l~~k--r~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~~ 303 (821)
.-.+.+.+-.+ +-++++|..-. ....+.+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33445556666 77889999853 2333333333322 124677888888876653
No 248
>PTZ00035 Rad51 protein; Provisional
Probab=95.70 E-value=0.071 Score=57.45 Aligned_cols=69 Identities=14% Similarity=0.000 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK----HYFDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
.+-++|..+=+.-.++.|+|.+|+|||||+..++-..... ..=..++|++....|+.+++ .++++.++.
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 3445555554567899999999999999998887432321 11235779998888887764 344555443
No 249
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.66 E-value=0.025 Score=55.06 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWV 226 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 226 (821)
...+|.+.|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999998 555556666665
No 250
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.64 E-value=0.051 Score=52.69 Aligned_cols=102 Identities=12% Similarity=0.043 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc-cc--ccceeEEEEcCCCCCHHHHHHHHHHHhCCchh-HHHHHHHhCCCcEEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV-KH--YFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LIILHEYLMTKRYLI 265 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~--~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~~l~~~l~~kr~Ll 265 (821)
-.+++|+|..|.|||||++.+..-... .+ .|+..-...+.+... +...+. .-.+.+.+..++-++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-----------LSgGq~qrv~laral~~~p~ll 93 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-----------LSGGELQRVAIAAALLRNATFY 93 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-----------CCHHHHHHHHHHHHHhcCCCEE
Confidence 459999999999999999999863211 11 122110111223222 222221 445566777788899
Q ss_pred EEecCCCH---HHHHHHHHhCCC--CCCCcEEEEEecchhhh
Q 045113 266 VIDDVWSI---EVWDIIREILPD--NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 266 VlDdv~~~---~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~ 302 (821)
++|..-.. ...+.+...+.. ...+.-||++|.+....
T Consensus 94 lLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 94 LFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 99998532 322333332221 11235677777776554
No 251
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.64 E-value=0.1 Score=59.94 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
...++|....++++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999875445668889999999999999999973
No 252
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.27 Score=52.80 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=74.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccc-------------------ccccceeEEEEcC---CCCCHHHHHHHHHHHhC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYV-------------------KHYFDCHAWVQEP---YTCYADQILDIIIKFLM 246 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~~wv~~s---~~~~~~~~~~~i~~~l~ 246 (821)
-...+-++|..|+||||+|+.+...--- .+......|+.-. +...++++-+ +.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~-l~~~~~ 99 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE-LVSFVV 99 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH-HHHHHh
Confidence 3567889999999999999776652100 0111123344221 2233333321 222211
Q ss_pred CchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchhhh--------cccccccCCc----
Q 045113 247 PSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKIDTV--------TLFQFENGQN---- 312 (821)
Q Consensus 247 ~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~--------~lf~~~~~~~---- 312 (821)
.. -..+++-++|+|++.. ....+.+...+.....++.+|+||.+.... ..+.|..-..
T Consensus 100 ~~--------~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 100 QT--------AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred hc--------cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 10 0123444557799975 467788888887766678888887776443 2222332211
Q ss_pred ------CCCCccchHHHHHHHcCCchHHHHHhh
Q 045113 313 ------IRLDLVPTGGPLRVTYQGWPFHILYHG 339 (821)
Q Consensus 313 ------~~~~~~~~~~~i~~~c~glPLai~~~g 339 (821)
......+.+..++..++|.|+.+..+.
T Consensus 172 ~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 172 QWLQQALPESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred HHHHHhcccCChHHHHHHHHHcCCCHHHHHHHH
Confidence 001112234466778888887655443
No 253
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.60 E-value=0.027 Score=55.04 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=59.4
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc-ccc-ceeEEEEcCCCCCHHHHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-HYF-DCHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F-~~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
-.++||-++.++++.-+-.+++ +.-+.|.||+|+||||-+..+.+ +.- ..+ +.+.=..+|....+.-+-..|-.
T Consensus 26 l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr--~LLG~~~ke~vLELNASdeRGIDvVRn~IK~ 101 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR--ELLGDSYKEAVLELNASDERGIDVVRNKIKM 101 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH--HHhChhhhhHhhhccCccccccHHHHHHHHH
Confidence 3579999999999877776665 88899999999999997666665 221 112 34444455555544433332211
Q ss_pred HhCCchhHHHHHHH--h-CCCcEEEEEecCCCH
Q 045113 244 FLMPSSRLIILHEY--L-MTKRYLIVIDDVWSI 273 (821)
Q Consensus 244 ~l~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~ 273 (821)
-. ++. | .++--.||||..++.
T Consensus 102 FA---------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 FA---------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HH---------HhhccCCCCceeEEEeeccchh
Confidence 10 011 1 245558899999875
No 254
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.58 E-value=0.039 Score=59.37 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=39.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|....+.++.+.+..-...-.-|-|+|-.|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999876544456788999999999999999986
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.58 E-value=0.11 Score=51.89 Aligned_cols=124 Identities=16% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCCeeechhhHHH---HHHHHhcC----CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHH
Q 045113 165 KNRDTVGLDDRMEE---LLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQI 237 (821)
Q Consensus 165 ~~~~~vGr~~~~~~---i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 237 (821)
.-.++||.++.+.+ |++.|..+ +...+-|-.+|.+|.|||.+|+++.+. .+--| +.|. .
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vk----a--- 184 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVK----A--- 184 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEec----h---
Confidence 34578998887765 67888764 467899999999999999999999994 43333 1111 1
Q ss_pred HHHHHHHhCCchh-HHHHHHHh-CCCcEEEEEecCCCH--------------HHHHHHHHhCC--CCCCCcEEEEEecch
Q 045113 238 LDIIIKFLMPSSR-LIILHEYL-MTKRYLIVIDDVWSI--------------EVWDIIREILP--DNQNGSRVLITLAKI 299 (821)
Q Consensus 238 ~~~i~~~l~~~~~-~~~l~~~l-~~kr~LlVlDdv~~~--------------~~~~~l~~~l~--~~~~gs~iiiTtr~~ 299 (821)
.+-|.+.++.... ..++.+.- +.-++.+.+|.++-. +..+.+...+. ..+-|-.-|-.|.+.
T Consensus 185 t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p 264 (368)
T COG1223 185 TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP 264 (368)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCCh
Confidence 1122222222211 33444333 358899999988621 22344444444 233455555566665
Q ss_pred hhh
Q 045113 300 DTV 302 (821)
Q Consensus 300 ~v~ 302 (821)
+..
T Consensus 265 ~~L 267 (368)
T COG1223 265 ELL 267 (368)
T ss_pred hhc
Confidence 555
No 256
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.57 E-value=0.051 Score=64.97 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhC
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLM 246 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 246 (821)
..++|....++++.+.+..-...-.-|-|+|..|+|||++|+.+++...-+ -...+.+.+..-. ...+...+.....
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~-~~~~~~~lfg~~~ 452 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMP-AGLLESDLFGHER 452 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCC-hhHhhhhhcCccc
Confidence 469999999999988887543345678899999999999999999742211 1133334433322 1222222222111
Q ss_pred Cch---hHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCC-----------CCCcEEEEEecch
Q 045113 247 PSS---RLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDN-----------QNGSRVLITLAKI 299 (821)
Q Consensus 247 ~~~---~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~-----------~~gs~iiiTtr~~ 299 (821)
+.. ........-....=.|+||+|... .....+...+..+ ..+.|||.||...
T Consensus 453 ~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 453 GAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 100 011111122233457999999753 4445555444321 1345888888653
No 257
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.57 E-value=0.045 Score=51.01 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 258
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.55 E-value=0.016 Score=58.87 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcchhhccccccchhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcccccCCChhHHHHHHHHHHHHhh
Q 045113 12 NFRLFSERLRRVLAGEEVALPDAAKQPIQNLHAEIEVVTSWLRDFEYDMSWLLLQKIAEDENDNPDLRTVMDEINCFTYE 91 (821)
Q Consensus 12 ~~~~~~~kl~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~~ 91 (821)
-|..++..+-++.. .....+.-++.+++-++.+++.+|.|++.+-.+ ........+.+..++...||+
T Consensus 297 yVdFlL~NLkdfq~-rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee-----------~~nkh~~~ed~a~~ii~kAye 364 (402)
T PF12061_consen 297 YVDFLLKNLKDFQG-RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEE-----------PHNKHDTNEDCATQIIRKAYE 364 (402)
T ss_pred HHHHHHhhHHHHhc-cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhc-----------cchhhhhhhhHHHHHHHHHhh
Confidence 45566677777666 666777888999999999999999999998551 333334489999999999999
Q ss_pred hHHHHHHhHhhhcccCCCCChHHHHHHHHHHHHHHHH
Q 045113 92 SEKVIDTFISSITQQKSQSGCREDICDALQGLQSKII 128 (821)
Q Consensus 92 ~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 128 (821)
+|.++|-+..........-.|...+..+|+-++++++
T Consensus 365 vEYVVDaCi~k~~P~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 365 VEYVVDACISKSVPHWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred eeeeeehhhcCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998855332110001233677777777777664
No 259
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.53 E-value=0.074 Score=52.59 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=73.0
Q ss_pred CCCCCeeechhhHHHHHHHHh---cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH
Q 045113 164 FKNRDTVGLDDRMEELLDLLI---EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
++-..++|.|..++.+++=-. .+. .-.-|-+||.-|.||+.|++++.+ ++....-.- |.|++. ++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrL--VEV~k~----dl~-- 125 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLRL--VEVDKE----DLA-- 125 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCeE--EEEcHH----HHh--
Confidence 444579999988888765332 232 245677999999999999999998 565544333 333322 000
Q ss_pred HHHHhCCchhHHHHHHHhC--CCcEEEEEecCCC---HHHHHHHHHhCCCC---CCCcEEEEEecch
Q 045113 241 IIKFLMPSSRLIILHEYLM--TKRYLIVIDDVWS---IEVWDIIREILPDN---QNGSRVLITLAKI 299 (821)
Q Consensus 241 i~~~l~~~~~~~~l~~~l~--~kr~LlVlDdv~~---~~~~~~l~~~l~~~---~~gs~iiiTtr~~ 299 (821)
+...|.+.|+ .+||.|..||+.- .+....++..+..+ .+...++..|-++
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 0334444554 5899999999952 35678888887743 3334455445443
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.48 E-value=0.043 Score=58.17 Aligned_cols=86 Identities=22% Similarity=0.091 Sum_probs=53.5
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh-------
Q 045113 179 LLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR------- 250 (821)
Q Consensus 179 i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------- 250 (821)
+-.+|. .+=+.-+++-|+|.+|+||||||..++. .....-..++|++....++.. .++.++...+
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p 115 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQP 115 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCC
Confidence 334454 4445578999999999999999998775 233334568899877766643 3344433211
Q ss_pred ------HHHHHHHhC-CCcEEEEEecCC
Q 045113 251 ------LIILHEYLM-TKRYLIVIDDVW 271 (821)
Q Consensus 251 ------~~~l~~~l~-~kr~LlVlDdv~ 271 (821)
...+...++ +.--+||+|.|-
T Consensus 116 ~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 116 DTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 223333333 355688888873
No 261
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.47 E-value=0.49 Score=53.58 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=34.1
Q ss_pred CCCeeechhhHHHHHHHHhc--------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIE--------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~--------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.++.|.+.-++.+.+.... +-...+-|-++|.+|.|||.+|+++.+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 34688888777666543211 112356788999999999999999998
No 262
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.086 Score=50.95 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=57.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE------------------cCCCCCH--HHHHHHHHHHhCCch
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQ------------------EPYTCYA--DQILDIIIKFLMPSS 249 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------------------~s~~~~~--~~~~~~i~~~l~~~~ 249 (821)
-.+++|+|..|.|||||.+.+..-.. .....+++. +.+.+.. ..+.+.+ +...+
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~l---LS~G~ 101 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI---LSGGQ 101 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHh---hCHHH
Confidence 46999999999999999999987321 111222211 1111111 1111111 22211
Q ss_pred h-HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 250 R-LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 250 ~-~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
. .-.+.+.+..++-++++|+.... ...+.+...+.....+..||++|.+....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 1 34456667778889999998642 22233333222212356788888766543
No 263
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.42 E-value=0.18 Score=58.34 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=70.5
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc--------------------ccccceeEE
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV--------------------KHYFDCHAW 225 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~~~~w 225 (821)
-.+++|.+...+.+...+..+. -...+-++|..|+||||+|+.+.+.--- ..++| ++.
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~e 92 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIE 92 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEE
Confidence 3579999999999999988753 2456778999999999999887652100 11222 222
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEec
Q 045113 226 VQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 226 v~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
+..+....+.++. ++...+.. .-..+++-++|+|++.. ...++.+...+........+|++|.
T Consensus 93 idaas~~~vd~ir-~i~~~v~~--------~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 93 IDAASNNGVDEIR-DIRDKVKY--------APSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred eeccccCCHHHHH-HHHHHHhh--------CcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 3322222222111 11111110 00234666889999974 3568888877765554555554443
No 264
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.014 Score=59.06 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=43.2
Q ss_pred CCCeeechhhHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 166 NRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
-.+|||.+.-++++.=++... ...+.-|-++|++|.||||||.-+.+ +....+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 457999999999987777653 45688899999999999999999999 554433
No 265
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.08 Score=51.29 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE-----------------EcCCCCC---HHHHHHHHHHHhCCch
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWV-----------------QEPYTCY---ADQILDIIIKFLMPSS 249 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-----------------~~s~~~~---~~~~~~~i~~~l~~~~ 249 (821)
-.+++|+|..|.|||||++.+...... ....+++ .+.+.+. -..+.+.+. +...+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--LS~G~ 100 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--LSGGM 100 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh--cCHHH
Confidence 458999999999999999999874211 1111111 1122211 112222222 22222
Q ss_pred h-HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCC-CCCCcEEEEEecchhhh
Q 045113 250 R-LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPD-NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 250 ~-~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~ 302 (821)
. .-.+.+.+..++=++++|+.-.. .....+...+.. ...|..||++|.+....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 2 44566777888899999998643 222333333221 12267788888876544
No 266
>PRK13695 putative NTPase; Provisional
Probab=95.36 E-value=0.017 Score=56.05 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998863
No 267
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.35 E-value=0.054 Score=51.91 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC--CCCHHHHHH-HHHH--HhCCchh-HHHHHHHhCCCcE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY--TCYADQILD-IIIK--FLMPSSR-LIILHEYLMTKRY 263 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~-~i~~--~l~~~~~-~~~l~~~l~~kr~ 263 (821)
-.+++|+|..|.|||||.+.+.... ......+++.-.. ..+..+..+ .+.. ++...+. .-.+.+.+-.++-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 4599999999999999999998732 2234444442111 111111111 1100 0111111 4455666777888
Q ss_pred EEEEecCCCH---HHHHHHHHhCCC-CCCCcEEEEEecchhh
Q 045113 264 LIVIDDVWSI---EVWDIIREILPD-NQNGSRVLITLAKIDT 301 (821)
Q Consensus 264 LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iiiTtr~~~v 301 (821)
++++|+.... .....+...+.. ...|.-||++|.+...
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999998542 333333333321 1236678888887653
No 268
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.32 E-value=0.14 Score=58.18 Aligned_cols=130 Identities=17% Similarity=0.098 Sum_probs=87.4
Q ss_pred CCCeeechhhHHHHHHHHhcC--C-CCceEEEEEcCCCChHHHHHHHHhcCcc------cccccceeEEEEcCCCCCHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG--P-PQLSAVTILDSIGLDKTAFAAEAYSGNY------VKHYFDCHAWVQEPYTCYADQ 236 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~--~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~s~~~~~~~ 236 (821)
+..+-+||.+..+|..++... + +.-+.+-|.|.+|.|||..+..|.+.-. --..|+ .+.|..-+-....+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 345779999999999998753 2 3456999999999999999999987321 112343 33444444567899
Q ss_pred HHHHHHHHhCCchh-----HHHHHHHhC-----CCcEEEEEecCCCHH--HHHHHHHhCCC-CCCCcEEEEEe
Q 045113 237 ILDIIIKFLMPSSR-----LIILHEYLM-----TKRYLIVIDDVWSIE--VWDIIREILPD-NQNGSRVLITL 296 (821)
Q Consensus 237 ~~~~i~~~l~~~~~-----~~~l~~~l~-----~kr~LlVlDdv~~~~--~~~~l~~~l~~-~~~gs~iiiTt 296 (821)
+...|..++.+... .+.+..+.. .+..++++|+++... .-+-+-..|.| ..++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 99999999998753 455555543 467899999985321 12223333333 45688876654
No 269
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.22 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988875
No 270
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.30 E-value=0.011 Score=53.83 Aligned_cols=20 Identities=30% Similarity=0.234 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 045113 193 VTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~ 212 (821)
|+|.|.+|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 271
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.30 E-value=0.15 Score=61.52 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.++.|.+..++++.+.+..+ -...+-|.++|.+|+|||++|+++.+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456889999888887776521 12345588899999999999999998
No 272
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.29 E-value=0.077 Score=52.52 Aligned_cols=111 Identities=8% Similarity=0.120 Sum_probs=58.3
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh-HH
Q 045113 174 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-LI 252 (821)
Q Consensus 174 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-~~ 252 (821)
.+..+.+..+..+. -+++.|.|.+|.||||+++.+.. ..... ...+.+.......... +.+..+.... ..
T Consensus 4 ~~Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~--~~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~a~Ti~ 74 (196)
T PF13604_consen 4 EEQREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAE--ALEAA-GKRVIGLAPTNKAAKE----LREKTGIEAQTIH 74 (196)
T ss_dssp HHHHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHH--HHHHT-T--EEEEESSHHHHHH----HHHHHTS-EEEHH
T ss_pred HHHHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHH--HHHhC-CCeEEEECCcHHHHHH----HHHhhCcchhhHH
Confidence 34445555554443 46888899999999999998876 23222 2333333333322233 3333332211 11
Q ss_pred HHHHHh----------CCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEE
Q 045113 253 ILHEYL----------MTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLIT 295 (821)
Q Consensus 253 ~l~~~l----------~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiT 295 (821)
.+.... ..++-+||+|+.... ..+..+....+. .|+|+|+.
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 75 SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 111111 123459999999753 567777777664 46788754
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.25 E-value=0.11 Score=49.96 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc-ccc--cc---eeEEEEcCCCCCH--HHHHHHHHH----HhCCchh-HHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV-KHY--FD---CHAWVQEPYTCYA--DQILDIIIK----FLMPSSR-LIILHE 256 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~~~--~~~~~~i~~----~l~~~~~-~~~l~~ 256 (821)
-.+++|+|..|.|||||++.+..-... .+. |+ .+.+ +.+.+.. ..+.+.+.. ++...+. .-.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974221 111 11 1222 2333211 133333321 1111111 445566
Q ss_pred HhCCCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 257 YLMTKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 257 ~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
.+..++=++++|+.-.. .....+...+... +..||++|.+....
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 67778889999998543 2222332322222 35688888766543
No 274
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.25 E-value=0.024 Score=57.83 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 187 PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 187 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+...+|+|.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999887
No 275
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.13 Score=56.34 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC--HHHHHHHHHHHhCCch----hHHHHHHHhCC-Cc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY--ADQILDIIIKFLMPSS----RLIILHEYLMT-KR 262 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~----~~~~l~~~l~~-kr 262 (821)
..++.++|.+|+||||++..+.........+ .+.+.....+. ..+.++..++.++.+. +...+.+.+.. ..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~--~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK--SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC--eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 5789999999999999998887522122222 33332222222 2333444444444431 13444444432 33
Q ss_pred EEEEEec
Q 045113 263 YLIVIDD 269 (821)
Q Consensus 263 ~LlVlDd 269 (821)
=+||+|-
T Consensus 301 D~VLIDT 307 (432)
T PRK12724 301 ELILIDT 307 (432)
T ss_pred CEEEEeC
Confidence 4588883
No 276
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.18 E-value=0.069 Score=54.97 Aligned_cols=93 Identities=18% Similarity=0.104 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc--ccccceeEEEEcCCCC-CHHHHHHHHHHHhCCch---------h-------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV--KHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSS---------R------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~---------~------- 250 (821)
-+.++|.|-.|+|||+|+..+.+...+ +++-+.++++-+.+.. .+.++.+++.+.=.... +
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 467899999999999999998875331 2234678888887764 46677777665422211 0
Q ss_pred ----HHHHHHHh---CCCcEEEEEecCCCH-HHHHHHHHh
Q 045113 251 ----LIILHEYL---MTKRYLIVIDDVWSI-EVWDIIREI 282 (821)
Q Consensus 251 ----~~~l~~~l---~~kr~LlVlDdv~~~-~~~~~l~~~ 282 (821)
+-.+.+++ +++++|+++||+... ..+.++...
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl~ 188 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISAA 188 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHhc
Confidence 34455555 368999999999653 344555433
No 277
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.18 E-value=0.16 Score=47.94 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=57.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE---cCCCCCHHHHHHHHHHHh-------------CCc-hh---
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQ---EPYTCYADQILDIIIKFL-------------MPS-SR--- 250 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i~~~l-------------~~~-~~--- 250 (821)
.+|-|++-.|.||||+|..+.- +...+=..+.+|. -........+++.+- .+ ... .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999877665 2222111222222 111223333332220 00 000 00
Q ss_pred ----HHHHHHHhCC-CcEEEEEecCCCH-----HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 251 ----LIILHEYLMT-KRYLIVIDDVWSI-----EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 251 ----~~~l~~~l~~-kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
.+..++.+.. .-=|+|||++-.. .+.+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 3344444544 4459999998543 34556666666556677899999974
No 278
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.17 E-value=0.07 Score=56.57 Aligned_cols=86 Identities=20% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh-------
Q 045113 179 LLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR------- 250 (821)
Q Consensus 179 i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------- 250 (821)
+-.+|. .+=+.-+++-|+|.+|+||||||..+.. .....=..++|++....++.. .+++++...+
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p 115 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQP 115 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecC
Confidence 334454 4445678999999999999999988776 233333567788776665543 3444443311
Q ss_pred ------HHHHHHHhC-CCcEEEEEecCC
Q 045113 251 ------LIILHEYLM-TKRYLIVIDDVW 271 (821)
Q Consensus 251 ------~~~l~~~l~-~kr~LlVlDdv~ 271 (821)
...+...++ +..-+||+|.|-
T Consensus 116 ~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 116 DTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred CCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 233333333 355688999874
No 279
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.15 E-value=0.072 Score=58.85 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCc-------hh------------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS-------SR------------ 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~------------ 250 (821)
-..++|+|..|+|||||++.+.... .....+++..-.+.-++.++....+...... .+
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4589999999999999999988632 2233455544334445555554444433211 01
Q ss_pred HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 ~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 33344444 48999999999954
No 280
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.15 E-value=0.068 Score=58.75 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC-HHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-..++|+|..|+|||||++.+.... ..+.++.+-+.+... +.++.++++..-.... +
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999998731 225666666666543 4556666544422211 1
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++.+|+++||+-.. ..+.++.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIs 272 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIA 272 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHH
Confidence 33445555 589999999999543 3444443
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.12 E-value=0.077 Score=51.41 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE------------------EcCCCCCH--HHHHHHHHHHhCCch
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWV------------------QEPYTCYA--DQILDIIIKFLMPSS 249 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------------------~~s~~~~~--~~~~~~i~~~l~~~~ 249 (821)
-.+++|+|..|.|||||.+.+..-... ....+++ .+.+.+.. ..+.+.+ +...+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l---LS~G~ 101 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI---LSGGQ 101 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC---cCHHH
Confidence 458999999999999999999863211 1111111 11222111 1112111 22222
Q ss_pred h-HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCC-CCCCcEEEEEecchhhh
Q 045113 250 R-LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPD-NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 250 ~-~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~ 302 (821)
. .-.+.+.+..++-++++|+.... .....+...+.. ...|..||++|.+....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 1 44556667777889999998643 222222222221 12366788888776543
No 282
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.11 E-value=0.19 Score=46.82 Aligned_cols=105 Identities=5% Similarity=0.071 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhcchhhccccccchhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhccccc-CCChhHHHHHHHHHH
Q 045113 9 MDINFRLFSERLRRVLAGEEVALPDAAKQPIQNLHAEIEVVTSWLRDFEYDMSWLLLQKIAEDE-NDNPDLRTVMDEINC 87 (821)
Q Consensus 9 ~~~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~wl~~l~~ 87 (821)
..||++.+++.+...+. +.......++.-.++|..+++.|..++++.+. .. .-+..-+.-++++.+
T Consensus 7 ~gaalG~~~~eLlk~v~-~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~------------~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVI-DASKKSLSFKSILKRLESTLESIIPIIKEIDK------------LNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHH------------HhhhcCCchhHHHHHHHH
Confidence 45777888888888888 88888889999999999999999999999998 32 222333778899999
Q ss_pred HHhhhHHHHHHhHhhhcccCCCCChH--HHHHHHHHHHHHHHHHHH
Q 045113 88 FTYESEKVIDTFISSITQQKSQSGCR--EDICDALQGLQSKIIDIK 131 (821)
Q Consensus 88 ~~~~~ed~ld~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~i~ 131 (821)
...++++++++|..-.. ..++ ++.+++|+++.+.+....
T Consensus 74 ~L~~g~~LV~k~sk~~r-----~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVRR-----WNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHHhccccH-----HHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99999999999865321 1122 667788888877775543
No 283
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.10 E-value=0.065 Score=53.55 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCc---------hh---------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPS---------SR--------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~---------~~--------- 250 (821)
-..++|.|.+|+|||+|++.+.+.. . =+..+++.+.+.. .+.++.+++...-... .+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~--~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ--D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC--T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc--c--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3579999999999999999998742 2 2344777777653 4566666664431111 00
Q ss_pred ------HHHHHHHhCCCcEEEEEecCCCH-HHHHHHHHh
Q 045113 251 ------LIILHEYLMTKRYLIVIDDVWSI-EVWDIIREI 282 (821)
Q Consensus 251 ------~~~l~~~l~~kr~LlVlDdv~~~-~~~~~l~~~ 282 (821)
++.++. +++.+|+++||+-.- ..+.++...
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsltr~a~A~reis~~ 127 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSLTRWAQAYREISLL 127 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHhh--cCCceeehhhhhHHHHHHHHhhhcc
Confidence 333333 789999999999432 334444443
No 284
>PRK09354 recA recombinase A; Provisional
Probab=95.09 E-value=0.082 Score=56.58 Aligned_cols=87 Identities=23% Similarity=0.098 Sum_probs=55.7
Q ss_pred HHHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh------
Q 045113 178 ELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR------ 250 (821)
Q Consensus 178 ~i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------ 250 (821)
.+-.+|. .+=+.-+++-|+|.+|+||||||.++... ....=..++|++....++.. .+++++...+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~q 119 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQ 119 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEec
Confidence 3444555 45456789999999999999999887762 33334578899887777653 3444444321
Q ss_pred -------HHHHHHHhC-CCcEEEEEecCC
Q 045113 251 -------LIILHEYLM-TKRYLIVIDDVW 271 (821)
Q Consensus 251 -------~~~l~~~l~-~kr~LlVlDdv~ 271 (821)
...+...++ +.--+||+|-|-
T Consensus 120 p~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 120 PDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 233333333 355688888874
No 285
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.08 E-value=0.067 Score=52.34 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 286
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.06 E-value=0.051 Score=61.85 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhC--CCcEEE
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLM--TKRYLI 265 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~--~kr~Ll 265 (821)
+.-+|.-++|.+|+||||||.-|.+.. -| .++=|.+|..-+...+-..|...+.. ...+. +++..+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~-------~s~l~adsrP~CL 391 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQN-------HSVLDADSRPVCL 391 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhh-------ccccccCCCcceE
Confidence 356899999999999999999999732 22 36667888888877777776655432 23443 688899
Q ss_pred EEecCCCH
Q 045113 266 VIDDVWSI 273 (821)
Q Consensus 266 VlDdv~~~ 273 (821)
|+|.++..
T Consensus 392 ViDEIDGa 399 (877)
T KOG1969|consen 392 VIDEIDGA 399 (877)
T ss_pred EEecccCC
Confidence 99999754
No 287
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.06 E-value=0.1 Score=51.53 Aligned_cols=57 Identities=16% Similarity=0.055 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHHhCCc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPS 248 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 248 (821)
.+||.++|..|+||||.+-.+.. +.+..=..+..++... .....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 36899999999999987666555 2333333455666442 233445555666666543
No 288
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.05 E-value=0.055 Score=56.24 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=65.2
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCc-
Q 045113 170 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS- 248 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~- 248 (821)
.|...+..+.+..+.... -.+|.|.|..|.||||+++.+.+ .+...-..++.+.-+..+....+.+ -.+...
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~~q---~~v~~~~ 134 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGINQ---VQVNEKA 134 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCceE---EEeCCcC
Confidence 455555544444444333 45899999999999999998765 2322111222222121211111100 000111
Q ss_pred -hh-HHHHHHHhCCCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 249 -SR-LIILHEYLMTKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 249 -~~-~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
.+ ...++..|+..+=.|+++++.+.+....+...... |-.++-|..-.++.
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~t---Gh~v~tTlHa~~~~ 187 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALT---GHLVLSTLHTNDAP 187 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHc---CCcEEEEeccCCHH
Confidence 11 56777788888889999999988754443333222 33355454433333
No 289
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.02 E-value=0.016 Score=57.42 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 290
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.18 Score=60.09 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCeeechhhHHHHHHHHhcC-----C-CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG-----P-PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~-----~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
..++|-++.+..|.+.+... + .....+-+.|..|+|||.||+++.. .+-+..+..+-++.| +.++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh-
Confidence 45888899999988888753 1 1477888999999999999999887 443334444444333 2233
Q ss_pred HHHHhCCch------hHHHHHHHhCCCcE-EEEEecCCCH--HHHHHHHHhCC
Q 045113 241 IIKFLMPSS------RLIILHEYLMTKRY-LIVIDDVWSI--EVWDIIREILP 284 (821)
Q Consensus 241 i~~~l~~~~------~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~l~~~l~ 284 (821)
+.+.++.+. ....|-+.++.++| .|+||||... .....+...+.
T Consensus 633 vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 333334332 26788889988776 7778999753 44555555544
No 291
>PTZ00301 uridine kinase; Provisional
Probab=95.00 E-value=0.024 Score=56.63 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|||.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 292
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.98 E-value=0.12 Score=62.03 Aligned_cols=144 Identities=16% Similarity=0.093 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC--CC-HHHH------HHHHHHHhCCc-hhHHHHHHHhC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT--CY-ADQI------LDIIIKFLMPS-SRLIILHEYLM 259 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~-~~~~------~~~i~~~l~~~-~~~~~l~~~l~ 259 (821)
.+++.|+|..|.||||+.+.+.-.. + .....++|.+... +. ...+ .+.+...+..- .+...+...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l--~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-L--MFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-H--HHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 5799999999999999998886520 0 0011111111110 00 0000 01111111110 11223333333
Q ss_pred --CCcEEEEEecCCCH---HHHHHH----HHhCCCCCCCcEEEEEecchhhhcccc-----------cccCCc-------
Q 045113 260 --TKRYLIVIDDVWSI---EVWDII----REILPDNQNGSRVLITLAKIDTVTLFQ-----------FENGQN------- 312 (821)
Q Consensus 260 --~kr~LlVlDdv~~~---~~~~~l----~~~l~~~~~gs~iiiTtr~~~v~~lf~-----------~~~~~~------- 312 (821)
+.+-|+++|..-.. .+-..+ ...+. ..|+.+|+||....+..+.. |....-
T Consensus 399 ~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~ 476 (771)
T TIGR01069 399 KTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLL 476 (771)
T ss_pred hcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEEC
Confidence 48899999998642 222222 22332 35789999999987762211 211100
Q ss_pred CCCCccchHHHHHHHcCCchHHHHHhh
Q 045113 313 IRLDLVPTGGPLRVTYQGWPFHILYHG 339 (821)
Q Consensus 313 ~~~~~~~~~~~i~~~c~glPLai~~~g 339 (821)
....-...|-+|++++ |+|-.+.--|
T Consensus 477 ~G~~g~S~a~~iA~~~-Glp~~ii~~A 502 (771)
T TIGR01069 477 KGIPGESYAFEIAQRY-GIPHFIIEQA 502 (771)
T ss_pred CCCCCCcHHHHHHHHh-CcCHHHHHHH
Confidence 0011134577888777 7888877766
No 293
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.95 E-value=0.04 Score=50.26 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=33.8
Q ss_pred HhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchh-hhccCcc
Q 045113 512 KICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKK 589 (821)
Q Consensus 512 ~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~ 589 (821)
.+|..++.|+.+.+.. .+..++ ..+.++.+|+.+.+..+ +..++......+.+|+.+.+.. .+..++. .+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455555666666553 344443 23445555666666553 4444443332444566666644 3333322 3334556
Q ss_pred CceeecCC
Q 045113 590 LRHLNFGS 597 (821)
Q Consensus 590 L~~L~L~~ 597 (821)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 66665543
No 294
>PRK08233 hypothetical protein; Provisional
Probab=94.92 E-value=0.021 Score=55.83 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 295
>PRK06547 hypothetical protein; Provisional
Probab=94.91 E-value=0.034 Score=53.63 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 179 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 179 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
+...+.. ....+|+|.|.+|+||||+|+.+.+.
T Consensus 6 ~~~~~~~--~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCG--GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444443 34889999999999999999999873
No 296
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.91 E-value=0.079 Score=57.77 Aligned_cols=90 Identities=21% Similarity=0.131 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh-----
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR----- 250 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----- 250 (821)
..++-+.|..+=..-.++.|.|.+|+|||||+..+.. .....-..++|++.... ..++.. -++.++...+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs--~~qi~~-Ra~rlg~~~~~l~l~ 142 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEES--PEQIKL-RADRLGISTENLYLL 142 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcC--HHHHHH-HHHHcCCCcccEEEE
Confidence 3445555555534467999999999999999998876 33333346778775443 333322 2333433211
Q ss_pred ----HHHHHHHhC-CCcEEEEEecC
Q 045113 251 ----LIILHEYLM-TKRYLIVIDDV 270 (821)
Q Consensus 251 ----~~~l~~~l~-~kr~LlVlDdv 270 (821)
.+.+.+.+. .+.-+||+|.+
T Consensus 143 ~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 143 AETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred ccCcHHHHHHHHHhcCCcEEEEcch
Confidence 344444443 24556777766
No 297
>PHA00729 NTP-binding motif containing protein
Probab=94.90 E-value=0.032 Score=55.68 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
++++.+...+ ...|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 3455554443 56789999999999999999987
No 298
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.89 E-value=0.066 Score=59.56 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-+.++|.|-+|+|||||+.++.+... +.+-+.++++-+.+.. .+.++.+++...-.... +
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 56899999999999999988887422 2356788888777654 45667776665422110 1
Q ss_pred --HHHHHHHh---CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 44555665 37999999999954
No 299
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.87 E-value=0.11 Score=54.49 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=81.4
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc-CcccccccceeEE----EEcCCCC----C-HHHH---
Q 045113 171 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS-GNYVKHYFDCHAW----VQEPYTC----Y-ADQI--- 237 (821)
Q Consensus 171 Gr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~-~~~~~~~F~~~~w----v~~s~~~----~-~~~~--- 237 (821)
+|+.+..--+++|.+++ +..|.+.|.+|.|||-||-+..= ....++.|..++- |.+.+.- . .++=
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 47777777888888877 99999999999999988755432 1123455554432 2233221 1 1111
Q ss_pred ----HHHHHHHhCCchh--HHHHHHH-------------hCC---CcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEE
Q 045113 238 ----LDIIIKFLMPSSR--LIILHEY-------------LMT---KRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLIT 295 (821)
Q Consensus 238 ----~~~i~~~l~~~~~--~~~l~~~-------------l~~---kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiT 295 (821)
.-+-++.+....+ ...+... +++ .+-+||+|...+-. -.+++..+...+.||||+.|
T Consensus 306 Wmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-pheikTiltR~G~GsKIVl~ 384 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-PHELKTILTRAGEGSKIVLT 384 (436)
T ss_pred hHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-HHHHHHHHHhccCCCEEEEc
Confidence 1111122221111 1122222 233 33589999996532 23455555667889999987
Q ss_pred ecchhhhcccccccCCcCCCCccc---hHHHHHHHcCCchHH
Q 045113 296 LAKIDTVTLFQFENGQNIRLDLVP---TGGPLRVTYQGWPFH 334 (821)
Q Consensus 296 tr~~~v~~lf~~~~~~~~~~~~~~---~~~~i~~~c~glPLa 334 (821)
---.++ +.+.+.+ -..-++++.+|+|+.
T Consensus 385 gd~aQi-----------D~~yl~~~snGLtyvverfk~~~l~ 415 (436)
T COG1875 385 GDPAQI-----------DTPYLDETSNGLTYVVEKFKGHPLS 415 (436)
T ss_pred CCHHHc-----------CCccccCCCccHHHHHHHhcCCCce
Confidence 543332 1222211 124467777777754
No 300
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.85 E-value=0.24 Score=55.22 Aligned_cols=40 Identities=15% Similarity=0.002 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEP 229 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 229 (821)
-+++.++|.+|+||||++..+.........-..+..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3599999999999999887776521101222345566553
No 301
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.84 E-value=0.082 Score=56.90 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=37.2
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 169 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 169 ~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
++|....++++.+.+..-...-.-|-|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888888888765444567899999999999999999863
No 302
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.2 Score=49.41 Aligned_cols=113 Identities=18% Similarity=0.122 Sum_probs=67.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccc-----ccc--------------eeEEEEcCCCC-----CHHH---------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKH-----YFD--------------CHAWVQEPYTC-----YADQ--------- 236 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-----~F~--------------~~~wv~~s~~~-----~~~~--------- 236 (821)
-.+-+|.|+.|.||+|||..+.-++..+- .|+ .-+|+....+. +..+
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~ 109 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNAR 109 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhh
Confidence 45889999999999999999998763310 121 12222211111 1222
Q ss_pred ------------HHHHHHHHhCCchh----------------HHHHHHHhCCCcEEEEEecCCCHHHHH---HHHHhCC-
Q 045113 237 ------------ILDIIIKFLMPSSR----------------LIILHEYLMTKRYLIVIDDVWSIEVWD---IIREILP- 284 (821)
Q Consensus 237 ------------~~~~i~~~l~~~~~----------------~~~l~~~l~~kr~LlVlDdv~~~~~~~---~l~~~l~- 284 (821)
..++.++.+....+ ..++.+.+.-++-+.|||..++--+.+ .+...+.
T Consensus 110 ~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~ 189 (251)
T COG0396 110 RGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189 (251)
T ss_pred hccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence 23333444444321 566667777788899999998754433 3333332
Q ss_pred CCCCCcEEEEEecchhhh
Q 045113 285 DNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 285 ~~~~gs~iiiTtr~~~v~ 302 (821)
-..+|+-++|.|..+.++
T Consensus 190 lr~~~~~~liITHy~rll 207 (251)
T COG0396 190 LREEGRGVLIITHYQRLL 207 (251)
T ss_pred HhcCCCeEEEEecHHHHH
Confidence 123477788888888877
No 303
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.83 E-value=0.083 Score=61.26 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=41.0
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
....++|....++++.+.+..-...-..|-|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999988764334556779999999999999999973
No 304
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.82 E-value=0.11 Score=53.44 Aligned_cols=90 Identities=18% Similarity=0.097 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccccccccee-EEEEcCCCC-CHHHHHHHHHHHhCCc---------hh-------
Q 045113 190 LSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFDCH-AWVQEPYTC-YADQILDIIIKFLMPS---------SR------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~---------~~------- 250 (821)
-+.++|.|-.|+|||+|| ..+.+. . +-+.+ +++-+.+.. .+.++.+++.+.-... ++
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 468999999999999995 666652 1 23444 566666654 4566776666432211 01
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHHHhC
Q 045113 251 ----LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIREIL 283 (821)
Q Consensus 251 ----~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~~~l 283 (821)
+-.+.+++ +++.+|+|+||+... ..|.++...+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 22333333 579999999999654 4566665544
No 305
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.79 E-value=0.023 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+..+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999997
No 306
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.77 E-value=0.021 Score=45.80 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 307
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.75 E-value=0.26 Score=53.16 Aligned_cols=123 Identities=11% Similarity=0.039 Sum_probs=69.0
Q ss_pred Ceee-chhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCc---c-c----------------ccccceeEEE
Q 045113 168 DTVG-LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGN---Y-V----------------KHYFDCHAWV 226 (821)
Q Consensus 168 ~~vG-r~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~---~-~----------------~~~F~~~~wv 226 (821)
.++| -+..++.+...+..+. -....-++|..|+||||+|+.+.+.- . . ..|-|.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 5566667777665543 35677899999999999988875421 0 0 0122322221
Q ss_pred EcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 227 QEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 227 ~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
..+....++++.. +.+.+.. .-..+.+=++|+|++... ...+.+...+.....++.+|++|.+..
T Consensus 85 ~~~~~i~id~ir~-l~~~~~~--------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 85 PDGQSIKKDQIRY-LKEEFSK--------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred cccccCCHHHHHH-HHHHHhh--------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 1122222222221 1111110 002245557899998643 567788888887777888887776543
No 308
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.076 Score=50.50 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC--CHHHHHHHHHH--HhCCchh-HHHHHHHhCCCcEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC--YADQILDIIIK--FLMPSSR-LIILHEYLMTKRYL 264 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~--~l~~~~~-~~~l~~~l~~kr~L 264 (821)
-.+++|+|..|.|||||++.+.... ......+++.-.... ........+.- ++...+. .-.+...+...+-+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 3699999999999999999999732 223444444321111 11111111110 0222221 34456666677889
Q ss_pred EEEecCCC---HHHHHHHHHhCCC-CCCCcEEEEEecchhhh
Q 045113 265 IVIDDVWS---IEVWDIIREILPD-NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 265 lVlDdv~~---~~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~ 302 (821)
+++|.... ......+...+.. ...+.-|+++|.+....
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 99999863 2333333333221 11256788888766544
No 309
>PRK04296 thymidine kinase; Provisional
Probab=94.74 E-value=0.052 Score=53.49 Aligned_cols=104 Identities=13% Similarity=-0.064 Sum_probs=55.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch------hHHHHHHHh---CCC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS------RLIILHEYL---MTK 261 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~l~~~l---~~k 261 (821)
.++-|+|..|.||||+|..+.. +...+-..++.+. ..++.+.....++.+++... ....+.+.+ .++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCC
Confidence 4677899999999999988877 3333333333331 11121222223344443211 122222222 234
Q ss_pred cEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 262 RYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 262 r~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
.-+||+|.+.. .++..++...+ ...|..||+|.++.+
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 55999999953 23333333332 234788999988754
No 310
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.74 E-value=0.14 Score=50.56 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=59.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCc--c-cccc--cc----------eeEEEEcCCCCC---HHHHHHHHHH-----HhC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGN--Y-VKHY--FD----------CHAWVQEPYTCY---ADQILDIIIK-----FLM 246 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~--~-~~~~--F~----------~~~wv~~s~~~~---~~~~~~~i~~-----~l~ 246 (821)
-.+++|.|..|.|||||.+.+..-. . ..+. |+ ..+. .+.+.+. -..+.+.+.. .+.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~t~~~~i~~~~~~~~LS 113 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIG-YVPQDDILHPTLTVRETLMFAAKLRGLS 113 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEE-EccCcccCCCCCcHHHHHHHHHHhccCC
Confidence 4689999999999999999998732 1 1111 11 1111 1222211 1122222221 222
Q ss_pred Cchh-HHHHHHHhCCCcEEEEEecCCC---HHHHHHHHHhCCC-CCCCcEEEEEecchh
Q 045113 247 PSSR-LIILHEYLMTKRYLIVIDDVWS---IEVWDIIREILPD-NQNGSRVLITLAKID 300 (821)
Q Consensus 247 ~~~~-~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~iiiTtr~~~ 300 (821)
..+. .-.+.+.+..++-++++|+.-. ......+...+.. ...|.-||++|.+..
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 2222 4456677777888999999854 3333333333332 123677888887753
No 311
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.72 E-value=0.04 Score=58.55 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.....++|||.+|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999993
No 312
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.72 E-value=0.025 Score=56.62 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.68 E-value=0.033 Score=61.73 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=37.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||++.++.+...+..+. -|-+.|.+|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 358999999999999888765 678999999999999999997
No 314
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.67 E-value=0.083 Score=57.49 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=49.7
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEcCC-
Q 045113 167 RDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF---DCHAWVQEPY- 230 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~- 230 (821)
..++|.++.++.+...+... +...+-|-++|.+|+||||+|+.+.. .....| +...++....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 45889999888887666632 11246788999999999999999998 344333 2222322222
Q ss_pred CCCHHHHHHHHHHHh
Q 045113 231 TCYADQILDIIIKFL 245 (821)
Q Consensus 231 ~~~~~~~~~~i~~~l 245 (821)
..+.+.+.+.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 315
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.66 E-value=0.23 Score=49.97 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999864
No 316
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.6 Score=52.60 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+|+|.+|+||||++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999988775
No 317
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.26 Score=53.50 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=46.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEcCC-CCCHHHHHHHHHHHhCCchh-------HHHHHHHhC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYF--DCHAWVQEPY-TCYADQILDIIIKFLMPSSR-------LIILHEYLM 259 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-------~~~l~~~l~ 259 (821)
-.++.++|..|+||||++..+.. +....+ ..+..++... .....+-++...+.++.+.. .......+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 45899999999999999998887 322223 3455555332 22334444444555554321 223333444
Q ss_pred CCcEEEEEecCCC
Q 045113 260 TKRYLIVIDDVWS 272 (821)
Q Consensus 260 ~kr~LlVlDdv~~ 272 (821)
++ -+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 54 5566999853
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.61 E-value=0.019 Score=34.35 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=11.3
Q ss_pred eeEEEeCCCCCCcccccccC
Q 045113 520 LRVLDLGSLVLNQYPSEIEN 539 (821)
Q Consensus 520 Lr~L~L~~~~l~~lp~~i~~ 539 (821)
|++|||++|.++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55666666665555555443
No 319
>PRK08149 ATP synthase SpaL; Validated
Probab=94.60 E-value=0.12 Score=57.03 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHHhCCc--------hh----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPS--------SR---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~--------~~---------- 250 (821)
-..++|+|..|+|||||++.+..... -+.++...+.. .-++.++..+........ .+
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 56899999999999999999987322 23333344433 335566666666543321 01
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ ++|++|+++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 33344444 58999999999954
No 320
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.59 E-value=0.16 Score=57.17 Aligned_cols=118 Identities=20% Similarity=0.332 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHH-HHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch------
Q 045113 177 EELLDLLIEGPPQLSAVTILDSIGLDKTA-FAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS------ 249 (821)
Q Consensus 177 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------ 249 (821)
+++++.+.+ -+||.|+|-.|.|||| |||.+|.+---.. ..|=++-.+....-.+.+..++.++..-
T Consensus 362 ~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edGY~~~---GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 362 DQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDGYADN---GMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcccccC---CeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 345555544 4599999999999997 8898987522211 2232233333344456666666664431
Q ss_pred -----h-------------HHHHHHHhC----CCcEEEEEecCCCH----H-HHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 250 -----R-------------LIILHEYLM----TKRYLIVIDDVWSI----E-VWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 250 -----~-------------~~~l~~~l~----~kr~LlVlDdv~~~----~-~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
+ ...|++.|+ .|=..||+|..-.. + -+..++..+.. ...-|+||||-..+.-
T Consensus 435 sIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a~ 513 (1042)
T KOG0924|consen 435 SIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDAQ 513 (1042)
T ss_pred EEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccHH
Confidence 1 344555554 45568999998543 1 12333333332 3368999999876654
No 321
>PRK06217 hypothetical protein; Validated
Probab=94.56 E-value=0.14 Score=50.04 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=25.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEE
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYF--DCHAWV 226 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 226 (821)
..|.|.|.+|+||||+|+++...... .+| |..+|.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 35899999999999999999974322 234 455664
No 322
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.55 E-value=0.37 Score=53.62 Aligned_cols=80 Identities=18% Similarity=0.077 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHHhCCc-------hh-HHHHHH---
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPS-------SR-LIILHE--- 256 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~-~~~l~~--- 256 (821)
...+|.++|.+|+||||.|..+.. ..+..-..+.-|++.. .+...+-++.++.+++.+ .+ ...+.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 468999999999999999988876 3332212344444332 223344455666665442 11 222222
Q ss_pred HhCCCcEEEEEecCC
Q 045113 257 YLMTKRYLIVIDDVW 271 (821)
Q Consensus 257 ~l~~kr~LlVlDdv~ 271 (821)
.+.+. =+||+|..-
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33333 578888874
No 323
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.093 Score=51.09 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999985
No 324
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.51 E-value=0.12 Score=49.73 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=34.8
Q ss_pred eeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 169 TVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 169 ~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
+||.+..+.++++.+..-.....-|-|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 578899999999988764333456679999999999999999983
No 325
>PRK06762 hypothetical protein; Provisional
Probab=94.49 E-value=0.029 Score=53.96 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 326
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.48 E-value=0.098 Score=58.02 Aligned_cols=90 Identities=10% Similarity=0.121 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-+.++|.|-.|+|||||+.++...... ++=+.++++-+.+.. .+.++.+++...=.... +
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 568999999999999999887653111 111356777776654 45677777765422210 1
Q ss_pred --HHHHHHHh---CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --LIILHEYL---MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --~~~l~~~l---~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++.+|+++||+-.- ..+.++.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 258 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVS 258 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHH
Confidence 34455555 679999999999543 3344444
No 327
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.47 E-value=0.17 Score=50.35 Aligned_cols=113 Identities=13% Similarity=0.138 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCc--c-ccc--ccc--------------eeEEEEcCCCC------CHHHHHHHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGN--Y-VKH--YFD--------------CHAWVQEPYTC------YADQILDIIIKF 244 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~--~-~~~--~F~--------------~~~wv~~s~~~------~~~~~~~~i~~~ 244 (821)
-.+++|+|..|.|||||.+.+.... . ..+ .|+ ..+++ +.+.+ .+.+..+.....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~~~~ 104 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYVNEG 104 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhcccc
Confidence 4699999999999999999988741 1 111 010 11222 22221 222222111112
Q ss_pred hCCchh-HHHHHHHhCCCcEEEEEecCCC---HHHHHHHHHhCCCC-CCCcEEEEEecchhhhc
Q 045113 245 LMPSSR-LIILHEYLMTKRYLIVIDDVWS---IEVWDIIREILPDN-QNGSRVLITLAKIDTVT 303 (821)
Q Consensus 245 l~~~~~-~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~l~~~-~~gs~iiiTtr~~~v~~ 303 (821)
+...+. .-.+.+.+...+-++++|+.-. ......+...+... ..|.-||++|.+.....
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 222211 4556677777888999999853 23333333332211 23667888888776554
No 328
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.32 Score=53.70 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999887654
No 329
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.43 E-value=0.043 Score=50.82 Aligned_cols=44 Identities=25% Similarity=0.101 Sum_probs=33.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCc
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS 248 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 248 (821)
+|.|-|.+|+||||+|+.+.+..-.+ | .+.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999832222 1 13446788888888776
No 330
>PRK14974 cell division protein FtsY; Provisional
Probab=94.41 E-value=0.4 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+..+|.++|++|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997777765
No 331
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.18 Score=56.44 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=73.5
Q ss_pred CCeeechhhHHHHHHHHhcCC-----------CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGP-----------PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYAD 235 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~-----------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 235 (821)
.++-|.++-..++...+..+- ....=|-+||.+|.|||-||++|.| +-+-.| ++|...
T Consensus 511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP---- 579 (802)
T KOG0733|consen 511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP---- 579 (802)
T ss_pred hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----
Confidence 455567777777666665431 2345677899999999999999999 555556 333222
Q ss_pred HHHHHHHHH-hCCchh-HHHHHHH-hCCCcEEEEEecCCCH-------------HHHHHHHHhCCC--CCCCcEEEEEec
Q 045113 236 QILDIIIKF-LMPSSR-LIILHEY-LMTKRYLIVIDDVWSI-------------EVWDIIREILPD--NQNGSRVLITLA 297 (821)
Q Consensus 236 ~~~~~i~~~-l~~~~~-~~~l~~~-l~~kr~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~gs~iiiTtr 297 (821)
+++.. ++.++. ...+.++ -..-++.|.||.++.. -..+.+...+.. ...|--||-.|.
T Consensus 580 ----ELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATN 655 (802)
T KOG0733|consen 580 ----ELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATN 655 (802)
T ss_pred ----HHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecC
Confidence 11111 111111 2333333 3468999999999631 123556555553 345667777788
Q ss_pred chhhh
Q 045113 298 KIDTV 302 (821)
Q Consensus 298 ~~~v~ 302 (821)
..++.
T Consensus 656 RPDiI 660 (802)
T KOG0733|consen 656 RPDII 660 (802)
T ss_pred CCccc
Confidence 77776
No 332
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.41 E-value=0.14 Score=56.62 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h---------
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSS--------R--------- 250 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~--------- 250 (821)
.-..++|+|..|+|||||++.+.+... -+.++++-+.+.. .+.++.++.+..-+... +
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 356899999999999999999997322 2455556666554 34455555544322210 1
Q ss_pred ---HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 ---LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 ---~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++.+|+++||+-.. ....++.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REis 268 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIG 268 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHH
Confidence 33444555 589999999999543 3344443
No 333
>PRK03839 putative kinase; Provisional
Probab=94.40 E-value=0.028 Score=54.93 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.|.|+|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999983
No 334
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.39 E-value=0.08 Score=58.52 Aligned_cols=91 Identities=11% Similarity=0.197 Sum_probs=60.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC-HHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY-ADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-+.++|.|-+|+|||+|+.++..... +.+-+.++++-+.+... +.++.+++...-.... +
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 46899999999999999999876422 23346888888877654 5566666655321110 1
Q ss_pred --HHHHHHHh---CCCcEEEEEecCCCH-HHHHHHHH
Q 045113 251 --LIILHEYL---MTKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 251 --~~~l~~~l---~~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
+-.+.+++ +++++|+++||+-.- ..+.++..
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl 253 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSG 253 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHHH
Confidence 44555665 469999999999543 34444443
No 335
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.38 E-value=0.058 Score=49.25 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 174 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 174 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
++.+++-+.|...-..-.+|.+.|.-|.||||+++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445555555543223458999999999999999999974
No 336
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.2 Score=55.08 Aligned_cols=75 Identities=21% Similarity=0.160 Sum_probs=47.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh------HHHHHHHhCCC
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR------LIILHEYLMTK 261 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~l~~~l~~k 261 (821)
.....+-+.|.+|+|||+||..+.. ...|..+=-++.... ++.++. .....+..+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCccHHHHHHHHHHHHHHhhcCc
Confidence 3567777899999999999999987 455754433321111 111111 23344555677
Q ss_pred cEEEEEecCCCHHHHHHH
Q 045113 262 RYLIVIDDVWSIEVWDII 279 (821)
Q Consensus 262 r~LlVlDdv~~~~~~~~l 279 (821)
--.||+||+..-.+|-.+
T Consensus 599 lsiivvDdiErLiD~vpI 616 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPI 616 (744)
T ss_pred ceEEEEcchhhhhccccc
Confidence 789999999766565433
No 337
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.37 E-value=0.11 Score=53.59 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 045113 193 VTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~ 212 (821)
|.++|.+|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 77899999999999999986
No 338
>PRK05922 type III secretion system ATPase; Validated
Probab=94.36 E-value=0.18 Score=55.63 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC-CCHHHHHHHHHHHhCCchh------------------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPSSR------------------ 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~------------------ 250 (821)
-..++|+|..|+|||||.+.+.... .-+..+.+-+... ..+.+...+..........
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998732 1233333333332 3344555444443322210
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++++|+++||+-.. ....++.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 34455555 579999999999543 3344443
No 339
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.36 E-value=0.18 Score=53.69 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-..++|+|..|+|||||.+.+..... -+..+..-+.. .-.+.++.......-.... +
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 46889999999999999999997322 12333343332 3455666555554422210 0
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ ++|.+|+++||+-.
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchH
Confidence 23333444 58999999999954
No 340
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.36 E-value=0.2 Score=48.92 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=59.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc-cc--ccc--------------eeEEEEcCCC------CCHHHHHHHHHHH--
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV-KH--YFD--------------CHAWVQEPYT------CYADQILDIIIKF-- 244 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~--~F~--------------~~~wv~~s~~------~~~~~~~~~i~~~-- 244 (821)
-.+++|+|..|.|||||++.+..-... .+ .|+ ..+.+ +.+. +....+.+.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY-VPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE-ecCCcccCcccCCCcHHHHHHHHhh
Confidence 458999999999999999999864211 11 011 11111 1221 1111222222211
Q ss_pred hCCchh-HHHHHHHhCCCcEEEEEecCCC---HHHHHHHHHhCCC-CCCCcEEEEEecchh
Q 045113 245 LMPSSR-LIILHEYLMTKRYLIVIDDVWS---IEVWDIIREILPD-NQNGSRVLITLAKID 300 (821)
Q Consensus 245 l~~~~~-~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~iiiTtr~~~ 300 (821)
+...+. .-.+.+.+-.++-++++|+.-. ....+.+...+.. ...|..||++|.+..
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 222222 3456677778888999999853 3333333333321 123677888888754
No 341
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.042 Score=54.20 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcCcccccc
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY 219 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~ 219 (821)
..+.+|||-|.+|+||||+|+.++. .+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 3578999999999999999999998 44433
No 342
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.34 E-value=0.025 Score=50.75 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccce
Q 045113 193 VTILDSIGLDKTAFAAEAYSGNYVKHYFDC 222 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~ 222 (821)
|-|+|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 56899999999999999998 67777753
No 343
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.16 Score=50.15 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCc---ccccc--cc----------eeEEEEcCCC-CCHHHHHHHHHH-----HhCCc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGN---YVKHY--FD----------CHAWVQEPYT-CYADQILDIIIK-----FLMPS 248 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~---~~~~~--F~----------~~~wv~~s~~-~~~~~~~~~i~~-----~l~~~ 248 (821)
-.+++|+|..|.|||||++.+.... ...+. |+ ...|+.-... +....+.+.+.. ++...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgG 112 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHH
Confidence 4699999999999999999998531 11111 11 1223321111 111122222221 22222
Q ss_pred hh-HHHHHHHhCCCcEEEEEecCCC---HHHHHHHHHhCCC-CCCCcEEEEEecchh
Q 045113 249 SR-LIILHEYLMTKRYLIVIDDVWS---IEVWDIIREILPD-NQNGSRVLITLAKID 300 (821)
Q Consensus 249 ~~-~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~iiiTtr~~~ 300 (821)
+. .-.+.+.+..++-++++|+.-. ......+...+.. ...|..||++|.+.+
T Consensus 113 e~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 22 4455667777888999999853 2222222222221 123667888887754
No 344
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.33 E-value=0.32 Score=51.92 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=73.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCc---c---------c-ccccceeEEEEcCCCCC
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGN---Y---------V-KHYFDCHAWVQEPYTCY 233 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~---~---------~-~~~F~~~~wv~~s~~~~ 233 (821)
.+++|-+..++.+...+..+. -....-++|..|+||+++|..+.+.- . + ...+....|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 468999999999999887753 23788999999999999887665420 0 0 12223345553210000
Q ss_pred HHHHHHHHHHHhC--C----c---hhHHHHHHHhC-----CCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEec
Q 045113 234 ADQILDIIIKFLM--P----S---SRLIILHEYLM-----TKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 234 ~~~~~~~i~~~l~--~----~---~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
-..+-.+-++..+ . . +..+.+.+.+. +.+-++|+|++... ...+.+...+.... .+.+|++|.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000001111111 0 0 11344555543 46668999998654 56777777776555 345555554
Q ss_pred ch
Q 045113 298 KI 299 (821)
Q Consensus 298 ~~ 299 (821)
+.
T Consensus 162 ~~ 163 (314)
T PRK07399 162 SP 163 (314)
T ss_pred Ch
Confidence 43
No 345
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.33 E-value=0.019 Score=34.32 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=7.1
Q ss_pred ceEEecCCcccccchhh
Q 045113 567 LYTLDMPFSYIDHTADE 583 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~~ 583 (821)
|++||+++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 346
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.26 Score=51.13 Aligned_cols=89 Identities=18% Similarity=0.055 Sum_probs=57.3
Q ss_pred HHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH-hCC---c-----hh
Q 045113 180 LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF-LMP---S-----SR 250 (821)
Q Consensus 180 ~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~---~-----~~ 250 (821)
-+.|..+-+.-+++=|+|..|.||||+|.+++-. ....-..++|++....++...+..- +.. +.. . +.
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l-~~~~~d~l~v~~~~~~e~ 126 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQL-GVDLLDNLLVSQPDTGEQ 126 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHH-HHhhhcceeEecCCCHHH
Confidence 3344455566899999999999999999887763 3333448999999999988765433 332 111 1 11
Q ss_pred ----HHHHHHHhCCCcEEEEEecCC
Q 045113 251 ----LIILHEYLMTKRYLIVIDDVW 271 (821)
Q Consensus 251 ----~~~l~~~l~~kr~LlVlDdv~ 271 (821)
++.+.+....+--|+|+|.|-
T Consensus 127 q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 127 QLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCc
Confidence 233333333345688888884
No 347
>PRK04040 adenylate kinase; Provisional
Probab=94.31 E-value=0.032 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 348
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.29 E-value=0.23 Score=48.07 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988876
No 349
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.29 E-value=0.094 Score=62.30 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=38.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..++|.+..+.++.+.+..-...-.-|-|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46899999999998888764333445789999999999999999973
No 350
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.29 E-value=0.2 Score=47.88 Aligned_cols=52 Identities=17% Similarity=0.322 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCcEEEEEecCC----CHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 251 LIILHEYLMTKRYLIVIDDVW----SIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 251 ~~~l~~~l~~kr~LlVlDdv~----~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
.-.|.+.+-+++-+++=|.-- ....|+.+...-.-+..|..|+++|.+.++.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 345667778899999999753 3456765554444466799999999988765
No 351
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.29 E-value=0.1 Score=56.62 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHH--HhCCc-hh-HHHHHHHhCCCcEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIK--FLMPS-SR-LIILHEYLMTKRYL 264 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~-~~-~~~l~~~l~~kr~L 264 (821)
-..|.|.|..|.||||+.+.+.+ .+......+++..-.. .+.... ...+.. +++.. .+ ...++..|+..+=.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~tiEdp~E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITIEDPIEYVHRN-KRSLINQREVGLDTLSFANALRAALREDPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEEcCChhhhccC-ccceEEccccCCCCcCHHHHHHHhhccCCCE
Confidence 46899999999999999999887 4444445555543211 110000 000011 11111 11 56778888889999
Q ss_pred EEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 265 IVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 265 lVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
|++|.+.+.+.+....... ..|-.|+.|+-..++.
T Consensus 199 i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 199 ILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred EEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 9999999887766533332 2355577776665555
No 352
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.22 E-value=0.46 Score=48.15 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 353
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.21 E-value=0.28 Score=49.82 Aligned_cols=24 Identities=17% Similarity=-0.056 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999999864
No 354
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.20 E-value=0.037 Score=54.35 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+..+|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 355
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.057 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..|-+.|.+|+||||+|+.+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577889999999999999887
No 356
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.16 E-value=0.17 Score=55.91 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-..++|.|..|+|||||.+.+++... -+.++++-+.+.. .+.++.+..+..-.... +
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 56899999999999999999998422 2567777676654 34555544333211110 1
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
+-.+.+++ +++++|+++||+-.. ....++..
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl 273 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGL 273 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHH
Confidence 33344444 589999999999543 33444443
No 357
>PRK00625 shikimate kinase; Provisional
Probab=94.15 E-value=0.033 Score=53.76 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 358
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.13 E-value=0.14 Score=56.51 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch--------h-----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS--------R----------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~----------- 250 (821)
-..++|+|..|+|||||++.+.... . ....++...-.+.-.+.++.++.+..-.... +
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~--~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT--D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999998732 2 1222332222223345555555444322211 0
Q ss_pred -HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 -LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 -~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+-.
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 33445555 57999999999954
No 359
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.10 E-value=0.1 Score=56.92 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=50.3
Q ss_pred CCCeeechhhHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEcCC
Q 045113 166 NRDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF---DCHAWVQEPY 230 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~ 230 (821)
+..++|.+..++.+...+... +....-|-++|.+|+||||||+.+.. .....| +...|.....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhccCCc
Confidence 346899999999998888541 11246789999999999999999987 333333 3322322221
Q ss_pred -CCCHHHHHHHHHHHh
Q 045113 231 -TCYADQILDIIIKFL 245 (821)
Q Consensus 231 -~~~~~~~~~~i~~~l 245 (821)
..+...+.+++....
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 225556666665554
No 360
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.09 E-value=0.24 Score=50.36 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=67.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcc-----cc------ccc---ceeEEEEc----CCCC--CH---------------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNY-----VK------HYF---DCHAWVQE----PYTC--YA--------------- 234 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~----s~~~--~~--------------- 234 (821)
-.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.- ...| ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36999999999999999999987211 11 001 23455531 1111 11
Q ss_pred -------HHHHHHHHHHhCCchh--------------HHHHHHHhCCCcEEEEEecCCCH------HHHHHHHHhCCCCC
Q 045113 235 -------DQILDIIIKFLMPSSR--------------LIILHEYLMTKRYLIVIDDVWSI------EVWDIIREILPDNQ 287 (821)
Q Consensus 235 -------~~~~~~i~~~l~~~~~--------------~~~l~~~l~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~ 287 (821)
.+...+.++.++...- .-.|.+.|..++=|+|||.--.. ...-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 1334444555544310 45667888999999999986432 3344444444433
Q ss_pred CCcEEEEEecchhhh
Q 045113 288 NGSRVLITLAKIDTV 302 (821)
Q Consensus 288 ~gs~iiiTtr~~~v~ 302 (821)
|.-|+++|-+-+..
T Consensus 189 -g~tIl~vtHDL~~v 202 (254)
T COG1121 189 -GKTVLMVTHDLGLV 202 (254)
T ss_pred -CCEEEEEeCCcHHh
Confidence 78899999887665
No 361
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.55 Score=50.04 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=81.7
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC-----ccc-----------ccccceeEEEEc-CCCCCH--
Q 045113 174 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG-----NYV-----------KHYFDCHAWVQE-PYTCYA-- 234 (821)
Q Consensus 174 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~-----~~~-----------~~~F~~~~wv~~-s~~~~~-- 234 (821)
...+.+...+..+. -...+-++|..|+||+|+|..+.+. +.. .+......||.. ....+.
T Consensus 11 ~~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 11 RAYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 34555555555442 2457889999999999999776542 110 011122334421 110000
Q ss_pred -HHHHHHHHHHhCCchhHHHHHHHh-----CCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecchhhh----
Q 045113 235 -DQILDIIIKFLMPSSRLIILHEYL-----MTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKIDTV---- 302 (821)
Q Consensus 235 -~~~~~~i~~~l~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~~v~---- 302 (821)
..|.- +....+.+.+ .+++-++|+|++... ..-+.+...+.....++.+|++|.+.+-.
T Consensus 90 ~~~I~i---------dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 90 RTEIVI---------EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred cccccH---------HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 00000 0122333333 245669999999754 56677777777666678777777654333
Q ss_pred ----cccccccCCc--------CCCCccchHHHHHHHcCCchHHHHHhh
Q 045113 303 ----TLFQFENGQN--------IRLDLVPTGGPLRVTYQGWPFHILYHG 339 (821)
Q Consensus 303 ----~lf~~~~~~~--------~~~~~~~~~~~i~~~c~glPLai~~~g 339 (821)
..+.|..-.. ....-...+..++..++|.|+.+..+.
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLAQGVSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHHHh
Confidence 2222322110 000111224577889999998766554
No 362
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.02 E-value=0.056 Score=54.28 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc--ccccc----------eeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV--KHYFD----------CHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEY 257 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~--~~~F~----------~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~ 257 (821)
.+++.|+|..|.||||+.+.+...... .+.|- ..++......-++.+-..... .+.+++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~------~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFM------IDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHH------HHHHHHHHH
Confidence 488999999999999999888732111 11110 011111111111111100000 012333333
Q ss_pred h--CCCcEEEEEecCCCH---HHH----HHHHHhCCC-CCCCcEEEEEecchhhh
Q 045113 258 L--MTKRYLIVIDDVWSI---EVW----DIIREILPD-NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 258 l--~~kr~LlVlDdv~~~---~~~----~~l~~~l~~-~~~gs~iiiTtr~~~v~ 302 (821)
+ ..++.|+++|..-.. .+. ..+...+.. +..+..+|+||.+...+
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 3 468899999998643 111 122223322 23346899999988887
No 363
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.00 E-value=0.23 Score=55.32 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=55.4
Q ss_pred CceEEEEEcCCCChHHHHH-HHHhcCccc-----ccccceeEEEEcCCCCC-HHHHHHHHHHHhC-Cc---------hh-
Q 045113 189 QLSAVTILDSIGLDKTAFA-AEAYSGNYV-----KHYFDCHAWVQEPYTCY-ADQILDIIIKFLM-PS---------SR- 250 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~-~~---------~~- 250 (821)
+-+.++|.|-.|+|||+|| -.+.+...+ .++-+.++++-+.+..+ +.+ ..+.+++-+ .. ++
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCC
Confidence 3567899999999999997 556664322 13445678888887754 334 333343333 11 01
Q ss_pred ----------HHHHHHHh--CCCcEEEEEecCCCH-HHHHHH
Q 045113 251 ----------LIILHEYL--MTKRYLIVIDDVWSI-EVWDII 279 (821)
Q Consensus 251 ----------~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l 279 (821)
+-.+.+++ +++.+|+|+||+... ..+.++
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REI 308 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHH
Confidence 33344444 579999999999653 334443
No 364
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.99 E-value=0.48 Score=47.38 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCcEEEEEecCCC---HHHHHHHHHhCCC--CCCCcEEEEEecchhhhc
Q 045113 251 LIILHEYLMTKRYLIVIDDVWS---IEVWDIIREILPD--NQNGSRVLITLAKIDTVT 303 (821)
Q Consensus 251 ~~~l~~~l~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~~ 303 (821)
.-.+.+.|-..+-+|+-|.--. ...=+.+...+.. ...|.-||+.|.+..+|.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK 207 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 4567788889999999998742 2222222222221 234788999999999984
No 365
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.98 E-value=0.33 Score=57.30 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-+||+++|..|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 46999999999999998888776
No 366
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.93 E-value=0.42 Score=48.24 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 367
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.91 E-value=0.19 Score=55.73 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch--------h----------
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
.-..++|.|..|+|||||++.+....... ..+++..-.+.-.+.++.+.+...-.... +
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999998743221 23444333334455565555544322110 1
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 33444444 47999999999954
No 368
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.90 E-value=0.22 Score=58.75 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCeeechhhHHHHHHHHh---cCC-------CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLI---EGP-------PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++.|.+..++++.+.+. ... .-.+-|.++|.+|.||||+|+.+.+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 357787777666655443 211 1123488999999999999999988
No 369
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.86 E-value=0.46 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999863
No 370
>PRK10867 signal recognition particle protein; Provisional
Probab=93.86 E-value=0.68 Score=51.45 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|.++|.+|+||||.|..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999997766655
No 371
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.85 E-value=0.18 Score=55.68 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC-CCHHHHHHHHHHHhCCc---------hh---------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPS---------SR--------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---------~~--------- 250 (821)
-..++|+|..|+|||||++.+.+.. +.+..+++.+... ..+.+...+....=... .+
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999998732 2344555555543 34445555543211110 00
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++++|+++||+-.. ....++.
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REis 265 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA 265 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHH
Confidence 33444444 579999999999543 3344443
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.84 E-value=0.6 Score=51.57 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|.++|.+|+||||+|..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999887765
No 373
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.84 E-value=0.23 Score=55.09 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC-CCHHHHHHHHHHHhCCch---------h---------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPSS---------R--------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---------~--------- 250 (821)
-..++|+|..|+|||||++.+.... ..+.++...+... ..+.++...+...-.... +
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4679999999999999999998732 1234444444433 345555555554432221 1
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++++|+++||+-.. ....++.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REis 278 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIA 278 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHH
Confidence 33344554 589999999999543 3344444
No 374
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.81 E-value=0.39 Score=49.41 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc-cc--ccc--eeEEEEcC----CCCCHHHHH--------------HHHHHHhC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV-KH--YFD--CHAWVQEP----YTCYADQIL--------------DIIIKFLM 246 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~--~F~--~~~wv~~s----~~~~~~~~~--------------~~i~~~l~ 246 (821)
-.+++|+|..|+|||||++.+...... .+ .|+ .+.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 468999999999999999999874211 11 122 12222111 011233222 22333333
Q ss_pred Cchh--------------HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCC--CCCCcEEEEEecchhhh
Q 045113 247 PSSR--------------LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPD--NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 247 ~~~~--------------~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~ 302 (821)
.... .-.+...|....=+++||..-.. ..-..+...+.. ...|..||++|.+...+
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3210 34455667788889999998643 222233222222 12356788888887655
No 375
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.77 E-value=0.19 Score=55.50 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccc--ccc---------eeEEEEcCCCCCHHHHHHHHHHHhC-Cch--------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKH--YFD---------CHAWVQEPYTCYADQILDIIIKFLM-PSS-------- 249 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-------- 249 (821)
-+.++|.|-.|+|||||+.++.+..+... ..| .++++-+.+.....+.+.+.+..-+ ...
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 56899999999999999999887543100 022 6677778887666666666666554 211
Q ss_pred h------------HHHHHHHhC---CCcEEEEEecCCCH-HHHHHHHH
Q 045113 250 R------------LIILHEYLM---TKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 250 ~------------~~~l~~~l~---~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
+ +-.+.++++ ++++|+++||+... ..+.++..
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl 268 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSA 268 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHH
Confidence 1 444566665 59999999999543 34444443
No 376
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.74 E-value=0.66 Score=49.40 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 377
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.73 E-value=0.0022 Score=62.52 Aligned_cols=88 Identities=17% Similarity=0.042 Sum_probs=73.9
Q ss_pred hccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCcee
Q 045113 514 CEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHL 593 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 593 (821)
+..++..++||++.+.+..+-..+..++.|..|+++.+.+.-+|...+ .+..+..+++..|+.+..|.++++++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~-q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAK-QQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHH-HHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 456778888999988887777777888888888999888888998888 8888888888888888889888999999998
Q ss_pred ecCCcccCC
Q 045113 594 NFGSITLPA 602 (821)
Q Consensus 594 ~L~~~~~~~ 602 (821)
++-.|.+..
T Consensus 117 e~k~~~~~~ 125 (326)
T KOG0473|consen 117 EQKKTEFFR 125 (326)
T ss_pred hhccCcchH
Confidence 888777643
No 378
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.73 E-value=0.039 Score=54.82 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 379
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.16 Score=52.44 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccc--cccceeEEEEc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVK--HYFDCHAWVQE 228 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~ 228 (821)
-++|-++|+||.|||+|++++++.-.++ +.|....-+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 4788999999999999999999965554 44554444443
No 380
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.70 E-value=0.076 Score=53.80 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 045113 193 VTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~ 212 (821)
|.|+|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999987
No 381
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.69 E-value=0.2 Score=52.75 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++|+++|.+|+||||++..+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988876
No 382
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.69 E-value=0.4 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999964
No 383
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.65 E-value=0.63 Score=46.76 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 384
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.65 E-value=0.042 Score=53.66 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 385
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.61 E-value=0.56 Score=52.08 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHh-----cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEE
Q 045113 173 DDRMEELLDLLI-----EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWV 226 (821)
Q Consensus 173 ~~~~~~i~~~L~-----~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 226 (821)
..-++++..||. .+.-+-+|.-|.|++|+||||-++.+... ..+..+-|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske----lg~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE----LGYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh----hCceeeeec
Confidence 445667788887 33445679999999999999999988872 224455565
No 386
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.60 E-value=0.35 Score=51.45 Aligned_cols=90 Identities=18% Similarity=0.100 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhC----Cc-----------hh---
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLM----PS-----------SR--- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~----~~-----------~~--- 250 (821)
-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.++++++-+... .. .+
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~ 232 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPV 232 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCH
Confidence 4589999999999999999999842 23578888777664 35566666543211 10 00
Q ss_pred ---------HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHHHhC
Q 045113 251 ---------LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIREIL 283 (821)
Q Consensus 251 ---------~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~~~l 283 (821)
.-.+.+++ +++.+|+++|++..- +...++...+
T Consensus 233 ~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~~l 277 (369)
T cd01134 233 AAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRL 277 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhc
Confidence 33444444 579999999999432 3444444433
No 387
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.60 E-value=0.047 Score=51.82 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
+-|.++||.|+||||+.+.+.+ ...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3478899999999999999987 444444
No 388
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.60 E-value=0.04 Score=55.58 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|||.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 389
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.59 E-value=0.33 Score=54.58 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC
Q 045113 172 LDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY 230 (821)
Q Consensus 172 r~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 230 (821)
...-..++-+.|..+=..-.++.|.|.+|+|||||+..+... ....=..++||+...
T Consensus 76 i~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 76 FSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 344456666666665455789999999999999999888652 222213577876544
No 390
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.59 E-value=0.095 Score=52.98 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=38.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHH
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 238 (821)
...++++.+.....+..+|||.|.||+||+||.-.+...-+-+++==.++=|+-|.+++=-.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 5566777776655568899999999999999988877622212222245555556666544433
No 391
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.57 E-value=0.61 Score=51.56 Aligned_cols=106 Identities=10% Similarity=0.041 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch--------h-----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS--------R----------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~----------- 250 (821)
-..++|+|..|+|||||++.+....+. ...++...-.+...+.+..+..+..-+... +
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 568899999999999999999874321 122333322333566666665554422210 1
Q ss_pred -HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHHHhC---CCCCCCcEEEEEecchh
Q 045113 251 -LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIREIL---PDNQNGSRVLITLAKID 300 (821)
Q Consensus 251 -~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~~~l---~~~~~gs~iiiTtr~~~ 300 (821)
+-.+.+++ +++..||++||+-.. ....++...+ |. .|.-..+.|....
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~ 287 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKK 287 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchh
Confidence 33444444 479999999999654 3334443332 32 2444455444333
No 392
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.91 Score=53.14 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=72.6
Q ss_pred CCCCeeechhhHHHH---HHHHhcCC-------CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCH
Q 045113 165 KNRDTVGLDDRMEEL---LDLLIEGP-------PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYA 234 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i---~~~L~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 234 (821)
.-.++.|-|+.+++| +++|..++ .-.+=+-++|++|.|||-||+++.-... +-|+++|.+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS--- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS--- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH---
Confidence 345688877766665 55555431 2356678999999999999999998433 334454443
Q ss_pred HHHHHHHHHHhCCchh--HHHHHHHh-CCCcEEEEEecCCCH-----------------HHHHHHHHhCCCCCCCc--EE
Q 045113 235 DQILDIIIKFLMPSSR--LIILHEYL-MTKRYLIVIDDVWSI-----------------EVWDIIREILPDNQNGS--RV 292 (821)
Q Consensus 235 ~~~~~~i~~~l~~~~~--~~~l~~~l-~~kr~LlVlDdv~~~-----------------~~~~~l~~~l~~~~~gs--~i 292 (821)
+..+.+..... ...+...- ...++.|.+|+++.. ..++++...+.....++ -+
T Consensus 379 -----EFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~ 453 (774)
T KOG0731|consen 379 -----EFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIV 453 (774)
T ss_pred -----HHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEE
Confidence 11111111110 22233222 357789999987521 23666666666444333 33
Q ss_pred EEEecchhhh--cccc
Q 045113 293 LITLAKIDTV--TLFQ 306 (821)
Q Consensus 293 iiTtr~~~v~--~lf~ 306 (821)
+-+|+..++. .|++
T Consensus 454 ~a~tnr~d~ld~allr 469 (774)
T KOG0731|consen 454 LAATNRPDILDPALLR 469 (774)
T ss_pred EeccCCccccCHHhcC
Confidence 4457777776 4444
No 393
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.57 E-value=0.05 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.+..+|.++||+|.||||..|.++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 34678888999999999999999973
No 394
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.56 E-value=0.91 Score=49.13 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=48.5
Q ss_pred ceEEEEEcCCCChHHH-HHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHHhCCch----hHHHHHHH---hCC
Q 045113 190 LSAVTILDSIGLDKTA-FAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSS----RLIILHEY---LMT 260 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~----~~~~l~~~---l~~ 260 (821)
-++|.+||+.|||||| ||+..+.-....++ ..+..++... .-...+=++.-++-++.+- +.+.+.+. +++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 7899999999999995 77776652211222 2455555432 2223333344444444441 13333333 333
Q ss_pred CcEEEEEecCCC----HHHHHHHHHhCCC
Q 045113 261 KRYLIVIDDVWS----IEVWDIIREILPD 285 (821)
Q Consensus 261 kr~LlVlDdv~~----~~~~~~l~~~l~~ 285 (821)
. =+|.+|=+.. ....+++...+..
T Consensus 282 ~-d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 282 C-DVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred C-CEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 4 3555566642 2445555555543
No 395
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.55 E-value=0.05 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..+|+|-||=|+||||||+++.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999983
No 396
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.54 E-value=0.085 Score=54.92 Aligned_cols=47 Identities=26% Similarity=0.125 Sum_probs=37.9
Q ss_pred HhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC
Q 045113 183 LIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT 231 (821)
Q Consensus 183 L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 231 (821)
|..+=+.-+++.|+|.+|+|||++|.++.. +.......++||+....
T Consensus 16 l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 16 LGGGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred hcCCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 334445688999999999999999988777 45566889999987765
No 397
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.51 E-value=0.073 Score=52.97 Aligned_cols=109 Identities=15% Similarity=0.080 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCch-----------hHHHHHHHh
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSS-----------RLIILHEYL 258 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~l~~~l 258 (821)
..++.|.|..|.||||+.+.+.-..-.. ...++|.+.. ..+ .+.+.|...+...+ +..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999988886421000 0111111100 000 11112222221111 012222222
Q ss_pred --CCCcEEEEEecCCC---HHH----HHHHHHhCCCCCCCcEEEEEecchhhhccc
Q 045113 259 --MTKRYLIVIDDVWS---IEV----WDIIREILPDNQNGSRVLITLAKIDTVTLF 305 (821)
Q Consensus 259 --~~kr~LlVlDdv~~---~~~----~~~l~~~l~~~~~gs~iiiTtr~~~v~~lf 305 (821)
..++-|+++|.... ..+ ...+...+.. .|+.+|+||-+..+++.+
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAIL 157 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHh
Confidence 35788999999843 322 1222233322 278999999998887443
No 398
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.51 E-value=0.092 Score=55.63 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCCeeechhhHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|+|.++.++++++.+... +..-+|+-++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999864 45689999999999999999999887
No 399
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.48 E-value=0.46 Score=44.65 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 400
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.45 E-value=0.53 Score=52.88 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.|++++|..|+||||++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 36999999999999999988886
No 401
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.45 E-value=0.19 Score=55.96 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=59.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h--------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD--CHAWVQEPYTC-YADQILDIIIKFLMPSS--------R-------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~-------- 250 (821)
-+.++|.|-.|+|||||+.++.+.....+.+. .++++-+.+.. .+.++.+++...=.... +
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 46899999999999999999988543322221 56666666654 45667776664422211 1
Q ss_pred ----HHHHHHHhC---CCcEEEEEecCCCH-HHHHHHHH
Q 045113 251 ----LIILHEYLM---TKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 251 ----~~~l~~~l~---~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
+-.+.++++ ++++|+++||+-.. ..+.++..
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl 259 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISA 259 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHH
Confidence 444566664 68999999999543 34444443
No 402
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=1.4 Score=43.92 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=75.4
Q ss_pred Cee-echhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHH
Q 045113 168 DTV-GLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYAD 235 (821)
Q Consensus 168 ~~v-Gr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 235 (821)
++| |.|..+++|.+.+.-+ -.+.+=+-++|.+|.|||-||++|++ ...+.|+.||.. +
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgs---e 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGS---E 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechH---H
Confidence 344 5788888888877643 13567788999999999999999998 334556667654 2
Q ss_pred HHHHHHHHHhCCchhHHHHHHHh----CCCcEEEEEecCCCH-------------HHH---HHHHHhCC--CCCCCcEEE
Q 045113 236 QILDIIIKFLMPSSRLIILHEYL----MTKRYLIVIDDVWSI-------------EVW---DIIREILP--DNQNGSRVL 293 (821)
Q Consensus 236 ~~~~~i~~~l~~~~~~~~l~~~l----~~kr~LlVlDdv~~~-------------~~~---~~l~~~l~--~~~~gs~ii 293 (821)
-+++-|.+ ....+++.. ..-+..|..|.+++. +.- -++...+. ...+.-|||
T Consensus 217 lvqk~ige------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 217 LVQKYIGE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred HHHHHhhh------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 22222221 122222222 346788999988631 111 12223333 234567999
Q ss_pred EEecchhhh--cccc
Q 045113 294 ITLAKIDTV--TLFQ 306 (821)
Q Consensus 294 iTtr~~~v~--~lf~ 306 (821)
..|..-++. .|+.
T Consensus 291 matnridild~allr 305 (404)
T KOG0728|consen 291 MATNRIDILDPALLR 305 (404)
T ss_pred EeccccccccHhhcC
Confidence 999888877 4555
No 403
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.41 E-value=0.52 Score=54.73 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-..++|+|..|.|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999975
No 404
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.40 E-value=0.17 Score=45.94 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=56.5
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 566 (821)
.+++|+.+.+...-. .+....|..++.|+.+.+..+ +..++ ..+.++..|+++.+.. .+..++......+++
T Consensus 10 ~~~~l~~i~~~~~~~-----~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 10 NCSNLESITFPNTIK-----KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp T-TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred CCCCCCEEEECCCee-----EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 567888887754221 255677888888999998875 66555 3567777899999976 566666555535889
Q ss_pred ceEEecCCcccccchh-hhccCccCceeecCC
Q 045113 567 LYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGS 597 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~ 597 (821)
|+.+++..+ +..++. .+.++ +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 999988664 555644 45555 788876654
No 405
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.38 E-value=0.059 Score=52.52 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 406
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.37 E-value=0.22 Score=55.07 Aligned_cols=91 Identities=11% Similarity=0.140 Sum_probs=58.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-+.++|.|-.|+|||||+.++..... +++=..++++-+.+.. .+.++.+++...=.... +
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56899999999999999999776311 1121367777776654 45677777754321110 1
Q ss_pred --HHHHHHHh---CCCcEEEEEecCCCH-HHHHHHHH
Q 045113 251 --LIILHEYL---MTKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 251 --~~~l~~~l---~~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
+-.+.+++ +++.+|+++||+-.- ..+.++..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl 258 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSA 258 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHH
Confidence 44555555 568999999999543 33444443
No 407
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.37 E-value=0.062 Score=51.97 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999998
No 408
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.37 E-value=0.12 Score=53.11 Aligned_cols=64 Identities=16% Similarity=0.029 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHH
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILD 239 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 239 (821)
-.+++..+....++..+|||.|.||+||+||.-.+.....-+++==.++=|+-|.+++--.++.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 4566777766666788999999999999999887776333334434566667777776555443
No 409
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.37 E-value=0.35 Score=54.31 Aligned_cols=54 Identities=19% Similarity=0.076 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT 231 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 231 (821)
..++-+.|..+=..-.++-|.|.+|+|||||+..+... ....=..++|++....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 34555556555344679999999999999999888763 3222235778775543
No 410
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.36 E-value=0.068 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999888776
No 411
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.33 E-value=0.28 Score=54.61 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH--hCC-------chh---------
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF--LMP-------SSR--------- 250 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~--l~~-------~~~--------- 250 (821)
.-.+++|+|..|+|||||++.+...... -..++++.--+.-++.++..+.+.. +.. .++
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 3579999999999999999998873221 1233443322333344443321111 100 000
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+-.
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 33444454 57999999999954
No 412
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.33 E-value=0.062 Score=50.55 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 045113 192 AVTILDSIGLDKTAFAAEAY 211 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~ 211 (821)
.|+|.|.||+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 413
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.32 E-value=0.097 Score=59.27 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=27.4
Q ss_pred HHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 180 LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 180 ~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+.+....++..+|+|.|..|+||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 444554555689999999999999999999987
No 414
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.31 E-value=1.1 Score=49.13 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccc--cccceeEEEEcCCCCCH--HHHHHHHHHHhCCch----hHHHHHHHhC-
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVK--HYFDCHAWVQEPYTCYA--DQILDIIIKFLMPSS----RLIILHEYLM- 259 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~----~~~~l~~~l~- 259 (821)
..++|.++|..|+||||.+..+....... .+=..+..+++. ++.. .+-++..++.++.+- ....+.+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999887777522211 111234445544 3332 223555566555441 1233333221
Q ss_pred -CCcEEEEEecCCC----HHHHHHHHHhCCCCCCC-cEEEE---Eecchhhhcccc
Q 045113 260 -TKRYLIVIDDVWS----IEVWDIIREILPDNQNG-SRVLI---TLAKIDTVTLFQ 306 (821)
Q Consensus 260 -~kr~LlVlDdv~~----~~~~~~l~~~l~~~~~g-s~iii---Ttr~~~v~~lf~ 306 (821)
...-+|++|-... ...+.++...+...... -.++| ||...++.+.|.
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3456888888853 22445555544432222 23333 344444445555
No 415
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.30 E-value=0.26 Score=54.31 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPS--------SR---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~---------- 250 (821)
-..++|+|..|+|||||++.+.+... -+..+.+.+.... .+.++.+.....-... .+
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999887322 2334445555543 3555555544432111 01
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
+-.+.+++ +++++|+++||+-.- ....++..
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REisl 248 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIAL 248 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHH
Confidence 33344444 589999999999543 33444433
No 416
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.30 E-value=0.57 Score=47.43 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 417
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.29 E-value=0.53 Score=48.72 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||.+.+.--
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999863
No 418
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.28 E-value=0.41 Score=45.85 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGN 214 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~ 214 (821)
-..+.|.|+.|+||+||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999853
No 419
>PRK13947 shikimate kinase; Provisional
Probab=93.25 E-value=0.058 Score=52.12 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 420
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.23 E-value=0.1 Score=55.41 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
.+++-+.|.|||||||+|.+..- ........++-|++....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988554 23333345677776666666665543
No 421
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.23 E-value=0.055 Score=52.71 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 422
>PF14516 AAA_35: AAA-like domain
Probab=93.23 E-value=2.2 Score=46.11 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=66.8
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC----C-CCHH----
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY----T-CYAD---- 235 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~----~-~~~~---- 235 (821)
+.+-.|.|...-+++.+.|..+. ..+.|.|.-.+|||+|...+.+..+- ..|. +++++... . .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHHHHH
Confidence 34456788877777888887642 48999999999999999998873222 2343 44666543 1 2344
Q ss_pred HHHHHHHHHhCCchh---------------HHHHHHHh---CCCcEEEEEecCCC
Q 045113 236 QILDIIIKFLMPSSR---------------LIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 236 ~~~~~i~~~l~~~~~---------------~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
.+...|.+++..... ..-+.+.+ .+++.+|+||+|+.
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 455566666665421 22333332 26899999999974
No 423
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.20 E-value=0.28 Score=58.06 Aligned_cols=88 Identities=20% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHHHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh-----
Q 045113 177 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR----- 250 (821)
Q Consensus 177 ~~i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----- 250 (821)
..+-++|. .+=+.-+++-|+|.+|+||||||..+... ....=..++|+.....++. ..+++++...+
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~ 118 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVS 118 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEe
Confidence 34445565 44455789999999999999999776542 2222256789988877774 25666665422
Q ss_pred --------HHHHHHHhC-CCcEEEEEecCC
Q 045113 251 --------LIILHEYLM-TKRYLIVIDDVW 271 (821)
Q Consensus 251 --------~~~l~~~l~-~kr~LlVlDdv~ 271 (821)
...+...++ ++--|||+|.+-
T Consensus 119 ~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 119 QPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred cCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 333444443 356689999985
No 424
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.14 E-value=0.078 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|.|+|.+|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999987
No 425
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.13 E-value=0.15 Score=47.26 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=47.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh--HHHHHHHhCCCcEEEEEecC
Q 045113 193 VTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR--LIILHEYLMTKRYLIVIDDV 270 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~l~~~l~~kr~LlVlDdv 270 (821)
|-++|.+|+|||+||+.++. .... ...-+.++...+..++....--. ..... ...+.+.+ .+..++|||++
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~-~~~~il~lDEi 74 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAM-RKGGILVLDEI 74 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTH-HEEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-ccccccccccccccc-cceeEEEECCc
Confidence 57899999999999999997 3321 22335677777777665432221 11100 00000000 18899999999
Q ss_pred CC--HHHHHHHHHhC
Q 045113 271 WS--IEVWDIIREIL 283 (821)
Q Consensus 271 ~~--~~~~~~l~~~l 283 (821)
.. ..-++.+...+
T Consensus 75 n~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 75 NRAPPEVLESLLSLL 89 (139)
T ss_dssp GG--HHHHHTTHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 74 34444444443
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.12 E-value=0.13 Score=50.96 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=28.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccc-cceeEEEEcCCCCCHHH
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVKHY-FDCHAWVQEPYTCYADQ 236 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~s~~~~~~~ 236 (821)
.|+|+|-||+||||+|..+... -.+.+ |+ +.=|+...++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCChHH
Confidence 6899999999999999885441 12222 32 44456666665543
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.11 E-value=0.7 Score=51.34 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...++.++|.+|+||||.|..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999877765
No 428
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.11 E-value=0.36 Score=49.34 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCcEEEEEecCCCHHH----HH--HHHHhCCCCCCCcEEEEEecchhhhcccc
Q 045113 251 LIILHEYLMTKRYLIVIDDVWSIEV----WD--IIREILPDNQNGSRVLITLAKIDTVTLFQ 306 (821)
Q Consensus 251 ~~~l~~~l~~kr~LlVlDdv~~~~~----~~--~l~~~l~~~~~gs~iiiTtr~~~v~~lf~ 306 (821)
.-.+.+.|.++.=+|+||.--+.-| .+ ++...+. ...|.-||+++.+-+.|--|+
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhC
Confidence 4566677888888999999754321 11 1222222 234678999999998884443
No 429
>PRK13949 shikimate kinase; Provisional
Probab=93.10 E-value=0.072 Score=51.34 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+-|.|+|++|+||||+++.+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999997
No 430
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.08 E-value=0.087 Score=50.54 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 431
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.08 E-value=0.1 Score=49.02 Aligned_cols=36 Identities=11% Similarity=-0.174 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQ 227 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 227 (821)
..||=+.|.+|+||||||+++.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35888999999999999999998 5554444555553
No 432
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.07 E-value=0.58 Score=46.73 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 433
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.06 E-value=0.074 Score=51.85 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
++|.|+|..|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 434
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.0082 Score=57.62 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=38.5
Q ss_pred cceEEEecccCCCCCcccccCCCCCCEEEEeccccCC-CeeeecCCCCcccceeeeccCCCccce-eeccccccccceeE
Q 045113 690 LTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG-RKLTCGSDGFPRLKVLHLKSMLWLEEW-TMGTGAMPKLECLI 767 (821)
Q Consensus 690 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~ 767 (821)
++.++-+++.+....+.-+.+++.++.|.+.+|..-+ ..+....+.+++|+.|+|++|+.+++- ...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444555555544445555555555555555443221 122222234555555555555555432 11234455555555
Q ss_pred EeecC
Q 045113 768 INPCA 772 (821)
Q Consensus 768 i~~c~ 772 (821)
|.+-+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 55433
No 435
>PTZ00494 tuzin-like protein; Provisional
Probab=93.01 E-value=2.9 Score=45.64 Aligned_cols=80 Identities=16% Similarity=0.067 Sum_probs=58.7
Q ss_pred CCCCCCCCeeechhhHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHH
Q 045113 161 SLSFKNRDTVGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILD 239 (821)
Q Consensus 161 ~~~~~~~~~vGr~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 239 (821)
........+|.|+.+-..+-..|..- ....+++.+.|.-|.||++|.+.....+.+- .++|.|-.. ++-++
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLr 436 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLR 436 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHH
Confidence 33455677899998888877777664 3458999999999999999999887643333 456766544 45567
Q ss_pred HHHHHhCCc
Q 045113 240 IIIKFLMPS 248 (821)
Q Consensus 240 ~i~~~l~~~ 248 (821)
.|.+.++-+
T Consensus 437 sVVKALgV~ 445 (664)
T PTZ00494 437 SVVRALGVS 445 (664)
T ss_pred HHHHHhCCC
Confidence 777887765
No 436
>PHA02774 E1; Provisional
Probab=93.01 E-value=0.3 Score=55.24 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC
Q 045113 177 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC 232 (821)
Q Consensus 177 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 232 (821)
..+..+| .+.+.-..+.|+|.+|.|||.+|..+.+- .. -..+.||.....|
T Consensus 422 ~~lk~~l-~~~PKknciv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~~s~F 472 (613)
T PHA02774 422 TALKDFL-KGIPKKNCLVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNSKSHF 472 (613)
T ss_pred HHHHHHH-hcCCcccEEEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEECcccc
Confidence 4444444 34445678999999999999999999982 22 2235566654333
No 437
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.00 E-value=0.064 Score=50.20 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 438
>PRK05439 pantothenate kinase; Provisional
Probab=92.99 E-value=0.14 Score=54.03 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 187 PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 187 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
....-+|||.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999998876
No 439
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.98 E-value=0.46 Score=52.67 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCcEEEEEecCCCHHH---HHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 251 LIILHEYLMTKRYLIVIDDVWSIEV---WDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 251 ~~~l~~~l~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
...|.+.|=.++.|+.||+-.+.-+ ...+-..+.....+ .++|++|+++-.
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfl 282 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFL 282 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhh
Confidence 4556666677899999999875433 22334444433333 799999998765
No 440
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.94 E-value=0.062 Score=47.38 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 045113 193 VTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~ 212 (821)
|-|+|.+|+|||++|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999887
No 441
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.94 E-value=0.066 Score=50.45 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
+|.++|.+|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999873
No 442
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.93 E-value=0.16 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=17.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..|.|+|.||+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999999987
No 443
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.45 Score=54.35 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=72.4
Q ss_pred CCCCCeeechhhHHH---HHHHHhcCC-------CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC
Q 045113 164 FKNRDTVGLDDRMEE---LLDLLIEGP-------PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY 233 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~---i~~~L~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 233 (821)
+...++-|.|+.+++ ++++|.++. .=.+=+..+|.+|.|||.||+++.....+- | .+.|.+--
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~F 219 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDF 219 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhh
Confidence 445678898776665 566666542 225667889999999999999999954443 2 11111100
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH------------H----HHHHHHHhCCCCC--CCcEEEEE
Q 045113 234 ADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI------------E----VWDIIREILPDNQ--NGSRVLIT 295 (821)
Q Consensus 234 ~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~------------~----~~~~l~~~l~~~~--~gs~iiiT 295 (821)
+ +|.-.++...-.+...+..++-++.|++|.++.. + .++++........ .|--|+..
T Consensus 220 V-----emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaa 294 (596)
T COG0465 220 V-----EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAA 294 (596)
T ss_pred h-----hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEec
Confidence 0 0011111000022333445567899999998621 2 3444544444333 34445555
Q ss_pred ecchhhh--cccc
Q 045113 296 LAKIDTV--TLFQ 306 (821)
Q Consensus 296 tr~~~v~--~lf~ 306 (821)
|-..+|. .|++
T Consensus 295 TNRpdVlD~ALlR 307 (596)
T COG0465 295 TNRPDVLDPALLR 307 (596)
T ss_pred CCCcccchHhhcC
Confidence 7777777 4444
No 444
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.87 E-value=0.12 Score=50.48 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQE 228 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 228 (821)
.++|.|+|..|+|||||++++.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 47899999999999999999998 66677866666553
No 445
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.87 E-value=0.16 Score=51.19 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 446
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.86 E-value=0.11 Score=50.11 Aligned_cols=40 Identities=13% Similarity=-0.036 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEcCCC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVK-HYFDCHAWVQEPYT 231 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~ 231 (821)
..++-+.|..|+|||.||+.+.+ .+. +.....+-+..+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcc
Confidence 56788999999999999999987 444 44445555555543
No 447
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.85 E-value=0.19 Score=56.52 Aligned_cols=81 Identities=12% Similarity=0.058 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccc-ccceeEE-EEcCCCCC-HHHHHHHHHHHh-----CCchh--------HHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKH-YFDCHAW-VQEPYTCY-ADQILDIIIKFL-----MPSSR--------LII 253 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~w-v~~s~~~~-~~~~~~~i~~~l-----~~~~~--------~~~ 253 (821)
-...+|+|.+|+|||||++.|.+ .+.. +=++.++ +-|.+.+. +.++.+.+-..+ ..+.. +-.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999998 3432 2233333 33444432 334433330000 00000 334
Q ss_pred HHHHh--CCCcEEEEEecCCC
Q 045113 254 LHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 254 l~~~l--~~kr~LlVlDdv~~ 272 (821)
+.+++ +++.+||++|++..
T Consensus 494 ~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchH
Confidence 44555 68999999999954
No 448
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.85 E-value=4 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999864
No 449
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.81 E-value=0.19 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+..+|.|+|.+|+|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999988
No 450
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.81 E-value=0.078 Score=51.49 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 451
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.80 E-value=0.31 Score=56.13 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=37.7
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-..++|....+.++++.+..-...-..|-|+|..|+||+++|+++..
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 34799999999999888864322244578999999999999999876
No 452
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=92.78 E-value=0.48 Score=52.64 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-..++|+|..|+|||||.+.+.... . -+..+.+.+.. ...+.+..++......... +
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~~--~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~ 220 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARGA--S--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAA 220 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHH
Confidence 5688999999999999999999732 2 22333333333 3445555544433221110 0
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+..+.+++ +++++|+++|++-.
T Consensus 221 ~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 221 YTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 22334444 47899999999954
No 453
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.75 E-value=0.088 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhcCc
Q 045113 193 VTILDSIGLDKTAFAAEAYSGN 214 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~~~ 214 (821)
|.|+|..|+|||||.+.+...+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.75 E-value=0.098 Score=52.29 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=24.9
Q ss_pred HhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 183 LIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 183 L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+..+....+.|.|+|.+|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 334445678999999999999999999976
No 455
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=92.71 E-value=0.51 Score=52.61 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccccccccee-EEEEcCCCC-CHHHHHHHHHHHhCCch---------h-------
Q 045113 190 LSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFDCH-AWVQEPYTC-YADQILDIIIKFLMPSS---------R------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~---------~------- 250 (821)
-+.++|.|-.|+|||||| ..+.+. ..-+.+ +++-+.+.. .+.++.+.+...=.... +
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 568999999999999995 556652 123444 777776654 45666666655322210 0
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHHH
Q 045113 251 ----LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 251 ----~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
+-.+.+++ +++.+|+|+||+... ..+.++.-
T Consensus 217 ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REisl 254 (485)
T CHL00059 217 APYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSL 254 (485)
T ss_pred HHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHHHH
Confidence 23344444 579999999999653 44555543
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.71 E-value=0.091 Score=48.65 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.|.|+|..|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999983
No 457
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.69 E-value=3.1 Score=44.34 Aligned_cols=156 Identities=10% Similarity=-0.006 Sum_probs=83.0
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC-----ccc-------------ccccceeEEEEcC---CCC
Q 045113 174 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG-----NYV-------------KHYFDCHAWVQEP---YTC 232 (821)
Q Consensus 174 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~-----~~~-------------~~~F~~~~wv~~s---~~~ 232 (821)
...+++...+..+. -...+-+.|..|+||+++|..+..- +.. .+......|+.-. +..
T Consensus 10 ~~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcC
Confidence 34455555554432 3558889999999999999877541 100 0111223333321 122
Q ss_pred CHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecchh-hh-------
Q 045113 233 YADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKID-TV------- 302 (821)
Q Consensus 233 ~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~~-v~------- 302 (821)
.++++ +++.+.+... -..+.+=.+|+|++... ...+.+...+.....++.+|++|.+.+ +.
T Consensus 89 ~vdqi-R~l~~~~~~~--------~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 89 TVEQI-RQCNRLAQES--------SQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred CHHHH-HHHHHHHhhC--------cccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 33333 1222111110 01244558889999754 678888888887777787777766654 33
Q ss_pred cccccccCCc--CC----CCccchHHHHHHHcCCchHHHHHhh
Q 045113 303 TLFQFENGQN--IR----LDLVPTGGPLRVTYQGWPFHILYHG 339 (821)
Q Consensus 303 ~lf~~~~~~~--~~----~~~~~~~~~i~~~c~glPLai~~~g 339 (821)
..+.|..... .. ..-.+.+..++..++|.|+.+..+.
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQGITVPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcCCchHHHHHHHcCCCHHHHHHHh
Confidence 2222322111 00 0001124567788899998776554
No 458
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.66 E-value=0.21 Score=52.12 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEP 229 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 229 (821)
..++|.++|.+|+||||++..+.. .....=..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCC
Confidence 478999999999999998877775 233322345555544
No 459
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.66 E-value=0.091 Score=51.85 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|||+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 460
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.64 E-value=0.58 Score=45.91 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=64.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEc-------------------CCCCC-----------------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQE-------------------PYTCY----------------- 233 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-------------------s~~~~----------------- 233 (821)
-.|+.|+|..|+|||||.+-+..-+++. +..+||.- =|.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 4599999999999999999998743332 23444421 12221
Q ss_pred --------HHHHHHHHHHHhCCchh--------------HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCC-CC
Q 045113 234 --------ADQILDIIIKFLMPSSR--------------LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPD-NQ 287 (821)
Q Consensus 234 --------~~~~~~~i~~~l~~~~~--------------~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~-~~ 287 (821)
.++...++++.++..+. .-.|.+.|.-++-++.||..-+. +-..++...... ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12233344444444321 45677888888899999999754 323333322221 23
Q ss_pred CCcEEEEEecchhhh
Q 045113 288 NGSRVLITLAKIDTV 302 (821)
Q Consensus 288 ~gs~iiiTtr~~~v~ 302 (821)
.|--+|+.|....-|
T Consensus 185 eGmTMivVTHEM~FA 199 (240)
T COG1126 185 EGMTMIIVTHEMGFA 199 (240)
T ss_pred cCCeEEEEechhHHH
Confidence 455666666665444
No 461
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.59 Score=46.83 Aligned_cols=125 Identities=19% Similarity=0.146 Sum_probs=70.5
Q ss_pred CCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY 233 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 233 (821)
.-.++-|-.+.++++.+....+ -+..+=|-.+|.+|.|||-+|++|.| +....|-.++ .
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvi--------g 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVI--------G 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeeh--------h
Confidence 3456777788888877766532 13466788999999999999999999 5555553222 1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHhCC-CcEEEEEecCCCH-------------HH---HHHHHHhCCCC--CCCcEEEE
Q 045113 234 ADQILDIIIKFLMPSSRLIILHEYLMT-KRYLIVIDDVWSI-------------EV---WDIIREILPDN--QNGSRVLI 294 (821)
Q Consensus 234 ~~~~~~~i~~~l~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-------------~~---~~~l~~~l~~~--~~gs~iii 294 (821)
.+-+|+-+.+.... ..++.+--++ |-++|.||.++.. +. .-++...+... ...-||+.
T Consensus 245 selvqkyvgegarm---vrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 245 SELVQKYVGEGARM---VRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred HHHHHHHhhhhHHH---HHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 11222221111000 3334444444 5578888887521 11 11222233321 22368888
Q ss_pred Eecchhhh
Q 045113 295 TLAKIDTV 302 (821)
Q Consensus 295 Ttr~~~v~ 302 (821)
.|...+..
T Consensus 322 atnrpdtl 329 (435)
T KOG0729|consen 322 ATNRPDTL 329 (435)
T ss_pred ecCCCCCc
Confidence 88877766
No 462
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.61 E-value=0.091 Score=48.78 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=26.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEcCC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVK-HYFDCHAWVQEPY 230 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~ 230 (821)
.+|.|+|..|+|||||++.+.+ +.. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4899999999999999999998 443 4455555555444
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.60 E-value=0.35 Score=53.52 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.-..++|+|..|+|||||++.+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 3578999999999999999998873
No 464
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.58 E-value=0.069 Score=53.25 Aligned_cols=21 Identities=10% Similarity=-0.066 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHh
Q 045113 191 SAVTILDSIGLDKTAFAAEAY 211 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~ 211 (821)
.++.|+|..|.||||+.+.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 699999999999999999988
No 465
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.57 E-value=0.19 Score=45.07 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=34.1
Q ss_pred CCeeechhhHHHHHHHHhc----C-CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIE----G-PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~----~-~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|..-..+.|++.+.+ . +...-|++..|.+|+|||.+++.+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 3577877666666666653 2 45688999999999999997766665
No 466
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.56 E-value=0.37 Score=53.23 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh---------
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPS--------SR--------- 250 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~--------- 250 (821)
.-..++|+|..|+|||||++.+..... . +..+..-+.+.. .+.++..+.+.+-... .+
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~--~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAK--A--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--C--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 357899999999999999998887322 1 222222233332 3444444433321111 00
Q ss_pred ---HHHHHHHh--CCCcEEEEEecCCCH-HHHHHH
Q 045113 251 ---LIILHEYL--MTKRYLIVIDDVWSI-EVWDII 279 (821)
Q Consensus 251 ---~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l 279 (821)
+-.+.+++ +++.+|+++||+-.. ..+.++
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEi 246 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREI 246 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHH
Confidence 33444444 479999999999543 334444
No 467
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.55 E-value=0.18 Score=52.66 Aligned_cols=89 Identities=20% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHH
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILH 255 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~ 255 (821)
...+++.+... -+-+-++|..|+|||++++.....-. ...| ...-++.|..-+...+++-|-..+.... ....
T Consensus 22 ~~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~--~~~~ 94 (272)
T PF12775_consen 22 YSYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRR--GRVY 94 (272)
T ss_dssp HHHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECT--TEEE
T ss_pred HHHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCC--CCCC
Confidence 45566777665 35678999999999999999886311 1222 2334455554444444432222221110 0000
Q ss_pred HHhCCCcEEEEEecCC
Q 045113 256 EYLMTKRYLIVIDDVW 271 (821)
Q Consensus 256 ~~l~~kr~LlVlDdv~ 271 (821)
.--.+|+.++.+||+-
T Consensus 95 gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 95 GPPGGKKLVLFIDDLN 110 (272)
T ss_dssp EEESSSEEEEEEETTT
T ss_pred CCCCCcEEEEEecccC
Confidence 0013688999999995
No 468
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.52 E-value=0.11 Score=51.72 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.52 E-value=0.29 Score=52.25 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH--HH-HHh-CCc--hh-HHHHHHHhCCCc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI--II-KFL-MPS--SR-LIILHEYLMTKR 262 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~--i~-~~l-~~~--~~-~~~l~~~l~~kr 262 (821)
-..+.|+|..|.|||||++.+... +.... .++.+.-........ -.. +. ..- ... .+ .+.+...|+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH-PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC-CCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 469999999999999999988863 22111 111121111111000 000 00 000 000 01 456666777888
Q ss_pred EEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 263 YLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 263 ~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
=.||+|.+...+.++.+... ..++.| ++.|+...+++
T Consensus 220 d~ii~gE~r~~e~~~~l~a~-~~g~~~--~i~T~Ha~~~~ 256 (308)
T TIGR02788 220 DRIILGELRGDEAFDFIRAV-NTGHPG--SITTLHAGSPE 256 (308)
T ss_pred CeEEEeccCCHHHHHHHHHH-hcCCCe--EEEEEeCCCHH
Confidence 88999999987777654443 333322 46666554443
No 470
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.52 E-value=0.7 Score=48.23 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=78.0
Q ss_pred CCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcC-cccccccceeEEEEcCCCCCHH-HHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSG-NYVKHYFDCHAWVQEPYTCYAD-QILDIII 242 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~ 242 (821)
..++|-.++..++-+++... .+...-+.|+|+.|.|||+|...+..+ .++..+| +-|........+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 45899999999998888753 233667889999999999998877765 2334444 344444443332 2455555
Q ss_pred HHhCCch------------hHHHHHHHhC------CCcEEEEEecCCCH-----H--HHHHHHHhCCCCCCCcEEEEEec
Q 045113 243 KFLMPSS------------RLIILHEYLM------TKRYLIVIDDVWSI-----E--VWDIIREILPDNQNGSRVLITLA 297 (821)
Q Consensus 243 ~~l~~~~------------~~~~l~~~l~------~kr~LlVlDdv~~~-----~--~~~~l~~~l~~~~~gs~iiiTtr 297 (821)
.++...- ....+-..|+ +-++..|+|..+-. . -++-+-..-....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 5554321 1334444443 24578888877532 1 11222222223445677788888
Q ss_pred chhhh
Q 045113 298 KIDTV 302 (821)
Q Consensus 298 ~~~v~ 302 (821)
-....
T Consensus 181 ld~lE 185 (408)
T KOG2228|consen 181 LDILE 185 (408)
T ss_pred ccHHH
Confidence 65443
No 471
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.52 E-value=1 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||++.+...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 472
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.50 E-value=3.3 Score=46.19 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=70.6
Q ss_pred eechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcc-----cccc----cc-----------eeEEEE--
Q 045113 170 VGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNY-----VKHY----FD-----------CHAWVQ-- 227 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~-----~~~~----F~-----------~~~wv~-- 227 (821)
+|.+... .|..-|.-+-+--..|++||..|+|||||.+.++-+.. ++.+ |. ...|..
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence 4555544 55555555544457899999999999999999997631 1111 11 111110
Q ss_pred cCCC---CCHHHHHHHHHHHhCCchh--------------HHHHHHHh-CCCcEEEEEecCCCH---HHHHHHHHhCCCC
Q 045113 228 EPYT---CYADQILDIIIKFLMPSSR--------------LIILHEYL-MTKRYLIVIDDVWSI---EVWDIIREILPDN 286 (821)
Q Consensus 228 ~s~~---~~~~~~~~~i~~~l~~~~~--------------~~~l~~~l-~~kr~LlVlDdv~~~---~~~~~l~~~l~~~ 286 (821)
+-.. -...+..+.|+...+...+ ...+..++ -..+-++|||...+. +..+.+..++...
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~ 555 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF 555 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Confidence 0000 1234556666766666532 23333333 478889999998654 3455555555543
Q ss_pred CCCcEEEEEecc
Q 045113 287 QNGSRVLITLAK 298 (821)
Q Consensus 287 ~~gs~iiiTtr~ 298 (821)
. |. ||++|.+
T Consensus 556 ~-Gg-vv~vSHD 565 (614)
T KOG0927|consen 556 P-GG-VVLVSHD 565 (614)
T ss_pred C-Cc-eeeeech
Confidence 3 44 4455544
No 473
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.48 E-value=0.26 Score=46.04 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=64.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDV 270 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv 270 (821)
--+.|+|-||+||+++.+..|.. -....+...|||+.-.. ++.-.+ +.-+++ .
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdfler----qi~v~~--------Edvr~m--------------l 73 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLER----QIKVLI--------EDVRSM--------------L 73 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhH----HHHhhH--------HHHHHH--------------H
Confidence 34678999999999999999973 22455677888853221 111000 000000 1
Q ss_pred CCH---HHHHHHHHhCCCCCCCcEEEEEecchhhhcccccccCCcCCCCccchHHHHHHHcCCchHHHH
Q 045113 271 WSI---EVWDIIREILPDNQNGSRVLITLAKIDTVTLFQFENGQNIRLDLVPTGGPLRVTYQGWPFHIL 336 (821)
Q Consensus 271 ~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~lf~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 336 (821)
|+. ++.+.|-.+...+...|..+..|.+..- -....++-++|.+.|+..|..++
T Consensus 74 WdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~S------------Fea~~~w~~kv~~e~~~IPtV~v 130 (246)
T KOG4252|consen 74 WDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYS------------FEATLEWYNKVQKETERIPTVFV 130 (246)
T ss_pred HHhccchhHHHHHHHHhccccceEEEEecccHHH------------HHHHHHHHHHHHHHhccCCeEEe
Confidence 432 5677777777777767766655543321 12334567889999999997654
No 474
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.23 Score=49.21 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=42.2
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
+.-.++-|.|..+++|.+...-+ -+..+=|-.+|.+|.|||.||++|.++ ....|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f 217 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF 217 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe
Confidence 44457889999999988877543 134677889999999999999999993 44445
No 475
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.47 Score=48.43 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=58.8
Q ss_pred CCeeechhhHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQ 236 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 236 (821)
.++-|.+..++.+.+...-+ ....+-|-++|.+|.||+.||++|.... ...| ++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nSTF-----FSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NSTF-----FSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCce-----EEeehH-----
Confidence 46789999998888876542 1247889999999999999999999842 2322 344433
Q ss_pred HHHHHHHHhCCchh--HHHHHHHh-CCCcEEEEEecCC
Q 045113 237 ILDIIIKFLMPSSR--LIILHEYL-MTKRYLIVIDDVW 271 (821)
Q Consensus 237 ~~~~i~~~l~~~~~--~~~l~~~l-~~kr~LlVlDdv~ 271 (821)
+++....+..+ ...|.+.- .+|+..|.+|.|+
T Consensus 201 ---DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 22222222222 33333333 3699999999995
No 476
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.45 E-value=0.42 Score=53.27 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC-CCHHHHHHHHHHHhCCc---------hh---------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT-CYADQILDIIIKFLMPS---------SR--------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---------~~--------- 250 (821)
-..++|+|..|+|||||++.+..... . +..+...+... -.+.++..+....-... ++
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~~---~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~ 238 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNTE---A-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGA 238 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---C-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999987321 1 22233333332 23444444433321111 00
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++.+|+++||+-.- ....++.
T Consensus 239 ~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REis 273 (440)
T TIGR01026 239 YVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIG 273 (440)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHH
Confidence 23333444 589999999999543 3344443
No 477
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.43 E-value=0.062 Score=52.70 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999883
No 478
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.42 E-value=0.11 Score=54.49 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|||.|..|+||||+|+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987754
No 479
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.41 E-value=0.16 Score=50.67 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.++||+|..|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 480
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=92.39 E-value=0.59 Score=52.82 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCChHHHHH-HHHhcCccccccccee-EEEEcCCCC-CHHHHHHHHHHHhCCch--------h-------
Q 045113 189 QLSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFDCH-AWVQEPYTC-YADQILDIIIKFLMPSS--------R------- 250 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~------- 250 (821)
.-+.++|.|-.|+|||||| .++.+. ..-+.+ +++-+.+.. .+.++.+.+...=.... +
T Consensus 160 rGQr~~I~g~~g~GKt~Lal~~i~~~----~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~ 235 (501)
T TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQ----KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQY 235 (501)
T ss_pred cCCEEEeecCCCCCccHHHHHHHHhh----cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHH
Confidence 3568999999999999996 667663 134554 777777764 45667766665422210 1
Q ss_pred -----HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 -----LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 -----~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++.+|||+||+... ..+.++.
T Consensus 236 ~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REis 273 (501)
T TIGR00962 236 LAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQIS 273 (501)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHH
Confidence 33334444 479999999999653 3455544
No 481
>PRK14530 adenylate kinase; Provisional
Probab=92.38 E-value=0.093 Score=52.89 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 482
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.37 E-value=0.11 Score=49.10 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=24.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccc-ccceeEEE
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVKH-YFDCHAWV 226 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv 226 (821)
||+|+|..|+|||||+.++.. ..+. .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEe
Confidence 589999999999999999998 3332 35444443
No 483
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.36 E-value=0.15 Score=59.36 Aligned_cols=78 Identities=10% Similarity=-0.038 Sum_probs=57.7
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.-.+++|.+..++.+...+... +.+-++|.+|+||||+|+.+.+.. ...+|+..+|..- ...+...+++.++.+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~~~ 102 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVPAG 102 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHHHh
Confidence 3457899988888887777654 368889999999999999998731 2234677888655 334677788888877
Q ss_pred hCCc
Q 045113 245 LMPS 248 (821)
Q Consensus 245 l~~~ 248 (821)
++..
T Consensus 103 ~G~~ 106 (637)
T PRK13765 103 KGKQ 106 (637)
T ss_pred cCHH
Confidence 7665
No 484
>PRK06820 type III secretion system ATPase; Validated
Probab=92.35 E-value=0.37 Score=53.36 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=46.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC-YADQILDIIIKFLMPS--------SR---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~---------- 250 (821)
-..++|+|..|+|||||++.+.... +-+..+..-+.... .+.++.+.....=... .+
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~ 238 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGL 238 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHH
Confidence 4588999999999999999998732 12344444454442 2223333222110000 00
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 239 STATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchhH
Confidence 33444444 58999999999954
No 485
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.34 E-value=0.32 Score=56.60 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=60.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEcCCCCCHHHHHHHHHHHhCC---c--------hhHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYF---DCHAWVQEPYTCYADQILDIIIKFLMP---S--------SRLIILH 255 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~i~~~l~~---~--------~~~~~l~ 255 (821)
-++..|.|.+|.||||+++.+.. .+.... ..++.+......-...+.+.+...+.. . ..+.-+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~--~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA--ALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 35888999999999999988876 222211 246777776666666666665543321 1 1245555
Q ss_pred HHhCC------------Cc---EEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEE
Q 045113 256 EYLMT------------KR---YLIVIDDVWSI--EVWDIIREILPDNQNGSRVLIT 295 (821)
Q Consensus 256 ~~l~~------------kr---~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiT 295 (821)
+.|.. .+ =++|+|..... .....+...++ +++|+|+-
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlv 298 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFL 298 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEe
Confidence 55532 11 28999998532 33445555554 46787743
No 486
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.32 E-value=0.094 Score=49.55 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhc
Q 045113 193 VTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 193 i~i~G~gGiGKTtLa~~v~~ 212 (821)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 487
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.26 E-value=0.11 Score=51.02 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999873
No 488
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.26 E-value=1.1 Score=52.00 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|+|||||.+.+...
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 489
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.49 Score=50.80 Aligned_cols=93 Identities=22% Similarity=0.128 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh--
Q 045113 173 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR-- 250 (821)
Q Consensus 173 ~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-- 250 (821)
...+.++-..|..+--.-.+|.|-|-+|||||||.-++.. +....- .+++|+-.+. ..++- --++.++...+
T Consensus 76 ~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES--~~Qik-lRA~RL~~~~~~l 149 (456)
T COG1066 76 STGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEES--LQQIK-LRADRLGLPTNNL 149 (456)
T ss_pred cCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcC--HHHHH-HHHHHhCCCccce
Confidence 4445555555655533467999999999999999988887 454333 6777654443 33322 22344543222
Q ss_pred -------HHHHHHHhC-CCcEEEEEecCC
Q 045113 251 -------LIILHEYLM-TKRYLIVIDDVW 271 (821)
Q Consensus 251 -------~~~l~~~l~-~kr~LlVlDdv~ 271 (821)
.+.+.+.+. .++-++|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 666666665 477899999984
No 490
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.23 E-value=1.3 Score=47.26 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|.|||||.+.+..-
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 491
>PRK13948 shikimate kinase; Provisional
Probab=92.21 E-value=0.12 Score=50.33 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+.|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 492
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.20 E-value=0.57 Score=52.45 Aligned_cols=88 Identities=14% Similarity=0.054 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCChHHHHH-HHHhcCcccccccce-eEEEEcCCCC-CHHHHHHHHHHHhCCch---------h------
Q 045113 189 QLSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPSS---------R------ 250 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~---------~------ 250 (821)
.-+.++|.|-.|+|||||| .++.+. ..-+. ++++-+.+.. .+.++.+.+...=.... +
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQ----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHh----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 3568999999999999996 577773 23354 6777777764 45667766665422211 1
Q ss_pred -----HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 -----LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 -----~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++.+|||+||+... ..+.++.
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REis 274 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELS 274 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHH
Confidence 33455555 579999999999643 3444443
No 493
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.18 E-value=0.099 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 494
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.18 E-value=0.21 Score=53.47 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+++.+....+...+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3455666554344578999999999999999998766
No 495
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.18 E-value=0.37 Score=47.94 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGN 214 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~ 214 (821)
...|+|+|.+|+|||||.+.+.+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch
Confidence 5689999999999999999988753
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.17 E-value=0.11 Score=51.98 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+|+|+|..|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999973
No 497
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=92.17 E-value=0.34 Score=53.59 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-CCCHHHHHHHHHHHhCCch--------h----------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-TCYADQILDIIIKFLMPSS--------R---------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~---------- 250 (821)
-..++|+|..|+|||||++.+...... +.++...+.. .-.+.++.+.+...-.... +
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~~~~----d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~ 250 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARYTQA----DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGA 250 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCCCCC----CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHH
Confidence 568999999999999999999873221 2222222222 2234444444332211110 0
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
+-.+.+++ +++.+|+++||+-.. ..+.++.
T Consensus 251 ~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEis 285 (455)
T PRK07960 251 AYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA 285 (455)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHH
Confidence 23344444 479999999999543 3344443
No 498
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.16 E-value=0.78 Score=52.41 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=61.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCc-cccccc-----ceeEEEEcCC---------------CC-C-HHHHHHHHHHHh
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGN-YVKHYF-----DCHAWVQEPY---------------TC-Y-ADQILDIIIKFL 245 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~-~~~~~F-----~~~~wv~~s~---------------~~-~-~~~~~~~i~~~l 245 (821)
.-..|+|+|..|+|||||.+.+.... ...+.. -.+.++.-.. .+ + .+.-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 34689999999999999999995421 111111 0111221111 01 1 123334444444
Q ss_pred CCchh---------------HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 246 MPSSR---------------LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 246 ~~~~~---------------~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
....+ .-.+...+..+.=+||||.--+. +..+.+...+.... |+ ||+.|.++.-.
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl 499 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFL 499 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHH
Confidence 44322 33455566778889999998754 44455555555433 54 66666665443
No 499
>PRK13975 thymidylate kinase; Provisional
Probab=92.15 E-value=0.11 Score=51.44 Aligned_cols=22 Identities=18% Similarity=-0.029 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999998
No 500
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.14 E-value=0.74 Score=47.44 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=77.5
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
..++|+|-... .+++.++......-+.+.|+|+.|+|||+-++.+++. ....+-+..+..++...++..+...
T Consensus 70 ~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 70 LAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred ccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHH
Confidence 34456665443 3345555443333458889999999999999999983 2223345677788877777777777
Q ss_pred hCCchh------HHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCC
Q 045113 245 LMPSSR------LIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQ 287 (821)
Q Consensus 245 l~~~~~------~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~ 287 (821)
.....+ ...+...+++..-+|+.|..... ..++.++......+
T Consensus 143 ~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 143 AFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred HhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC
Confidence 666543 66777777888889999988653 56666665544333
Done!