Query 045113
Match_columns 821
No_of_seqs 483 out of 4417
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-44 4.8E-49 417.0 20.3 268 170-456 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-35 6E-40 376.9 22.4 266 163-450 120-450 (1249)
3 1vt4_I APAF-1 related killer D 100.0 4.3E-35 1.5E-39 340.7 18.0 254 168-446 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-30 5.4E-35 304.2 22.4 263 165-450 122-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 3.7E-27 1.3E-31 283.7 10.4 320 488-820 316-765 (768)
6 3vq2_A TLR4, TOLL-like recepto 99.9 6.5E-26 2.2E-30 266.2 19.1 322 467-796 30-532 (606)
7 3o6n_A APL1; leucine-rich repe 99.9 1.4E-25 4.8E-30 248.3 19.3 290 488-796 43-350 (390)
8 3oja_B Anopheles plasmodium-re 99.9 1.9E-25 6.6E-30 261.0 18.8 290 488-796 49-356 (597)
9 4ecn_A Leucine-rich repeat pro 99.9 2.3E-25 7.7E-30 266.7 18.4 268 516-796 489-838 (876)
10 3v47_A TOLL-like receptor 5B a 99.9 4.1E-25 1.4E-29 249.9 19.1 320 467-796 28-406 (455)
11 3rgz_A Protein brassinosteroid 99.9 1.7E-25 5.9E-30 269.1 16.1 315 469-796 200-549 (768)
12 4eco_A Uncharacterized protein 99.9 2.6E-25 8.9E-30 261.5 16.7 308 469-796 249-598 (636)
13 2id5_A Lingo-1, leucine rich r 99.9 1.1E-24 3.7E-29 247.9 20.8 296 488-796 30-331 (477)
14 2z63_A TOLL-like receptor 4, v 99.9 4.4E-25 1.5E-29 257.1 17.9 323 467-796 26-529 (570)
15 4eco_A Uncharacterized protein 99.9 1.8E-25 6.1E-30 262.9 14.5 299 488-796 204-577 (636)
16 4fmz_A Internalin; leucine ric 99.9 2.2E-24 7.7E-29 234.6 21.7 299 469-796 44-344 (347)
17 4ecn_A Leucine-rich repeat pro 99.9 8.8E-25 3E-29 261.6 19.8 314 469-796 491-870 (876)
18 3t6q_A CD180 antigen; protein- 99.9 5.2E-24 1.8E-28 250.0 20.9 272 519-796 255-558 (606)
19 4fmz_A Internalin; leucine ric 99.9 4.5E-24 1.5E-28 232.3 18.4 280 488-796 42-322 (347)
20 2z7x_B TOLL-like receptor 1, v 99.9 2E-23 6.7E-28 240.3 22.4 313 468-796 20-479 (520)
21 1o6v_A Internalin A; bacterial 99.9 2.9E-23 9.9E-28 235.3 22.8 303 469-796 46-386 (466)
22 1o6v_A Internalin A; bacterial 99.9 1.2E-23 4E-28 238.5 19.5 283 488-796 44-364 (466)
23 2z81_A CD282 antigen, TOLL-lik 99.9 6.5E-24 2.2E-28 246.0 17.7 321 468-796 25-508 (549)
24 3t6q_A CD180 antigen; protein- 99.9 6.2E-24 2.1E-28 249.3 17.7 324 467-796 31-436 (606)
25 2z7x_B TOLL-like receptor 1, v 99.9 1E-23 3.5E-28 242.7 18.8 313 472-796 3-455 (520)
26 3vq2_A TLR4, TOLL-like recepto 99.9 8.8E-24 3E-28 248.0 15.9 130 488-622 30-163 (606)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-23 5.7E-28 243.1 17.8 311 468-796 51-508 (562)
28 3v47_A TOLL-like receptor 5B a 99.9 1.9E-23 6.4E-28 236.2 17.3 301 488-796 28-382 (455)
29 3o6n_A APL1; leucine-rich repe 99.9 3.6E-23 1.2E-27 228.9 17.8 269 516-796 43-329 (390)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-23 7.5E-28 242.2 16.6 314 472-796 34-484 (562)
31 4fcg_A Uncharacterized protein 99.9 1.9E-23 6.4E-28 225.0 13.9 232 516-794 79-310 (328)
32 2z81_A CD282 antigen, TOLL-lik 99.9 3.9E-23 1.3E-27 239.5 17.0 297 488-796 24-421 (549)
33 2id5_A Lingo-1, leucine rich r 99.9 1.3E-22 4.4E-27 230.8 20.0 269 518-796 32-307 (477)
34 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-22 4.8E-27 246.4 21.4 312 467-796 22-392 (844)
35 1ziw_A TOLL-like receptor 3; i 99.9 7.5E-23 2.6E-27 243.5 18.6 321 467-795 23-440 (680)
36 3oja_B Anopheles plasmodium-re 99.9 5.9E-23 2E-27 240.0 17.0 270 516-796 49-335 (597)
37 2z63_A TOLL-like receptor 4, v 99.9 5E-23 1.7E-27 239.7 14.9 130 488-622 26-159 (570)
38 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-22 6.2E-27 240.2 18.4 301 488-796 23-364 (680)
39 3bz5_A Internalin-J, INLJ; leu 99.9 7.7E-22 2.6E-26 222.1 22.1 289 469-796 42-350 (457)
40 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-22 1.4E-26 224.3 19.6 271 488-796 40-329 (457)
41 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-23 7.7E-28 223.0 8.6 243 518-796 50-302 (313)
42 1xku_A Decorin; proteoglycan, 99.9 2E-22 6.9E-27 217.5 15.2 262 518-795 52-329 (330)
43 3j0a_A TOLL-like receptor 5; m 99.9 3.3E-22 1.1E-26 243.1 18.0 298 488-796 22-373 (844)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-22 4E-27 219.5 12.5 282 491-796 34-331 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 6.7E-23 2.3E-27 219.3 8.7 245 490-748 50-302 (313)
46 2ft3_A Biglycan; proteoglycan, 99.9 7.5E-22 2.6E-26 213.2 14.3 284 471-772 35-331 (332)
47 1xku_A Decorin; proteoglycan, 99.9 2.1E-21 7.1E-26 209.6 17.2 264 517-796 30-304 (330)
48 4g8a_A TOLL-like receptor 4; l 99.9 7.3E-21 2.5E-25 224.2 19.8 322 467-796 50-578 (635)
49 4fcg_A Uncharacterized protein 99.8 2.1E-21 7.2E-26 209.0 11.0 219 488-720 79-309 (328)
50 2z80_A TOLL-like receptor 2, v 99.8 9.9E-21 3.4E-25 206.3 13.0 248 518-796 52-312 (353)
51 1jl5_A Outer protein YOPM; leu 99.8 7.2E-20 2.5E-24 205.8 19.7 289 468-796 90-407 (454)
52 1z7x_W Ribonuclease inhibitor; 99.8 3.8E-22 1.3E-26 225.8 -2.3 153 488-644 54-237 (461)
53 2z66_A Variable lymphocyte rec 99.8 3E-20 1E-24 198.2 12.0 222 518-748 28-259 (306)
54 2z66_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 197.7 11.8 228 488-727 26-263 (306)
55 2z80_A TOLL-like receptor 2, v 99.8 4.2E-20 1.4E-24 201.3 11.1 247 488-748 50-312 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.8 5.7E-19 1.9E-23 204.7 20.2 254 471-796 42-295 (622)
57 1ozn_A Reticulon 4 receptor; N 99.8 6.7E-20 2.3E-24 193.3 11.0 247 518-795 32-284 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-20 7.8E-25 200.1 7.0 249 509-777 25-278 (317)
59 3zyi_A Leucine-rich repeat-con 99.8 3.4E-19 1.2E-23 200.9 16.2 239 521-796 57-301 (452)
60 3ogk_B Coronatine-insensitive 99.8 5.7E-20 2E-24 214.9 10.1 322 469-796 112-524 (592)
61 1z7x_W Ribonuclease inhibitor; 99.8 5.3E-21 1.8E-25 216.4 0.4 327 468-796 2-409 (461)
62 4g8a_A TOLL-like receptor 4; l 99.8 9E-19 3.1E-23 206.4 19.3 299 467-773 74-579 (635)
63 3zyj_A Leucine-rich repeat-con 99.8 7E-19 2.4E-23 197.6 16.7 239 521-796 46-290 (440)
64 1jl5_A Outer protein YOPM; leu 99.8 1.7E-18 5.7E-23 194.7 18.5 288 468-796 110-427 (454)
65 3zyi_A Leucine-rich repeat-con 99.8 1E-18 3.5E-23 197.0 16.6 226 488-724 73-302 (452)
66 3zyj_A Leucine-rich repeat-con 99.8 9.6E-19 3.3E-23 196.5 16.0 224 489-724 63-291 (440)
67 3ogk_B Coronatine-insensitive 99.8 1.7E-19 5.7E-24 210.9 9.6 305 489-795 191-548 (592)
68 1ozn_A Reticulon 4 receptor; N 99.8 3.3E-19 1.1E-23 188.0 10.7 247 488-771 30-284 (285)
69 3o53_A Protein LRIM1, AGAP0063 99.8 4.2E-20 1.4E-24 198.1 2.4 265 488-774 32-299 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.8 2E-18 6.9E-23 200.1 15.5 236 467-748 59-295 (622)
71 3oja_A Leucine-rich immune mol 99.8 1.8E-19 6.2E-24 204.5 6.0 235 515-770 31-271 (487)
72 1wwl_A Monocyte differentiatio 99.8 1.2E-19 4E-24 194.1 1.9 246 513-796 38-307 (312)
73 2p1m_B Transport inhibitor res 99.7 1E-18 3.5E-23 204.3 9.2 323 469-797 105-518 (594)
74 3oja_A Leucine-rich immune mol 99.7 3.9E-19 1.3E-23 201.8 5.3 240 532-792 21-269 (487)
75 1wwl_A Monocyte differentiatio 99.7 1E-18 3.4E-23 186.8 6.4 240 489-772 42-307 (312)
76 3rfs_A Internalin B, repeat mo 99.7 2.7E-17 9.3E-22 171.9 13.8 207 515-760 38-245 (272)
77 2p1m_B Transport inhibitor res 99.7 8.9E-19 3E-23 204.9 1.4 302 488-796 103-492 (594)
78 2ast_B S-phase kinase-associat 99.7 2.7E-18 9.1E-23 185.6 3.9 254 491-782 48-314 (336)
79 1h6u_A Internalin H; cell adhe 99.7 4.2E-17 1.4E-21 173.7 12.5 192 516-726 39-231 (308)
80 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 166.7 14.7 196 519-748 17-216 (270)
81 3rfs_A Internalin B, repeat mo 99.7 2.4E-17 8.2E-22 172.4 8.5 230 518-787 19-248 (272)
82 1p9a_G Platelet glycoprotein I 99.7 2.7E-16 9.3E-21 165.8 15.7 198 515-724 7-207 (290)
83 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.7E-21 167.0 13.4 214 523-772 12-235 (276)
84 2ca6_A RAN GTPase-activating p 99.7 5.9E-18 2E-22 186.7 3.0 229 488-748 30-314 (386)
85 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.8E-21 167.7 12.2 199 519-726 29-238 (276)
86 2ast_B S-phase kinase-associat 99.7 3.2E-17 1.1E-21 177.1 6.7 241 471-748 49-304 (336)
87 2ca6_A RAN GTPase-activating p 99.7 3.7E-18 1.3E-22 188.3 -1.1 245 509-777 23-319 (386)
88 1h6u_A Internalin H; cell adhe 99.6 2.8E-16 9.7E-21 167.3 11.5 202 524-747 25-227 (308)
89 1p9a_G Platelet glycoprotein I 99.6 7.8E-16 2.7E-20 162.2 14.6 198 488-702 8-209 (290)
90 2o6q_A Variable lymphocyte rec 99.6 8.6E-16 2.9E-20 160.3 13.2 197 542-773 17-217 (270)
91 4ay9_X Follicle-stimulating ho 99.6 6.7E-16 2.3E-20 167.7 10.9 236 521-793 12-254 (350)
92 2xwt_C Thyrotropin receptor; s 99.6 7.9E-16 2.7E-20 157.5 9.5 207 530-796 23-237 (239)
93 4glp_A Monocyte differentiatio 99.6 2.3E-15 7.9E-20 160.5 12.6 110 488-601 62-182 (310)
94 3goz_A Leucine-rich repeat-con 99.6 2.9E-16 9.8E-21 171.5 5.5 234 509-748 13-295 (362)
95 2xwt_C Thyrotropin receptor; s 99.6 1.7E-15 6E-20 154.9 10.7 196 519-747 32-236 (239)
96 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 149.9 15.2 176 518-726 14-193 (251)
97 3goz_A Leucine-rich repeat-con 99.6 1.4E-16 4.8E-21 173.9 0.3 247 522-773 2-296 (362)
98 3qfl_A MLA10; coiled-coil, (CC 99.6 4.9E-15 1.7E-19 131.0 8.4 82 11-105 1-84 (115)
99 4glp_A Monocyte differentiatio 99.6 2.6E-15 9E-20 160.1 6.8 103 519-622 65-179 (310)
100 1h6t_A Internalin B; cell adhe 99.5 8.9E-15 3.1E-19 154.3 10.4 171 515-726 43-214 (291)
101 1m9s_A Internalin B; cell inva 99.5 9.9E-15 3.4E-19 168.9 10.6 172 515-703 40-212 (605)
102 1m9s_A Internalin B; cell inva 99.5 1E-14 3.5E-19 168.8 8.5 191 518-727 21-212 (605)
103 3cvr_A Invasion plasmid antige 99.5 1.7E-14 5.7E-19 165.2 9.8 91 518-621 59-149 (571)
104 4ay9_X Follicle-stimulating ho 99.5 3.6E-14 1.2E-18 154.0 11.1 235 493-770 12-255 (350)
105 2o6s_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 138.4 12.7 180 521-762 10-190 (208)
106 3m19_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 141.8 13.5 168 473-644 18-189 (251)
107 1xeu_A Internalin C; cellular 99.5 4.7E-14 1.6E-18 146.4 9.1 170 516-727 17-187 (263)
108 4ezg_A Putative uncharacterize 99.5 4.9E-14 1.7E-18 139.5 6.4 84 514-599 62-147 (197)
109 4ezg_A Putative uncharacterize 99.4 2.3E-13 7.9E-18 134.6 10.8 151 538-725 41-194 (197)
110 1h6t_A Internalin B; cell adhe 99.4 9.3E-13 3.2E-17 138.7 15.7 166 488-670 44-210 (291)
111 2o6s_A Variable lymphocyte rec 99.4 1.8E-13 6E-18 136.7 7.8 148 488-644 26-175 (208)
112 2v9t_B SLIT homolog 2 protein 99.4 7.9E-13 2.7E-17 133.1 12.0 150 521-725 14-165 (220)
113 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.3E-18 163.7 5.2 152 469-622 173-326 (727)
114 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5E-17 131.1 11.4 151 521-726 14-167 (220)
115 3cvr_A Invasion plasmid antige 99.4 1.5E-12 5.1E-17 149.0 12.6 186 490-727 59-245 (571)
116 1dce_A Protein (RAB geranylger 99.4 5.4E-15 1.9E-19 170.1 -7.8 215 538-792 346-567 (567)
117 1dce_A Protein (RAB geranylger 99.4 4.2E-15 1.4E-19 171.0 -8.9 178 515-726 346-547 (567)
118 1xeu_A Internalin C; cellular 99.4 1.4E-12 4.7E-17 135.2 10.4 124 513-644 36-160 (263)
119 2xot_A Amphoterin-induced prot 99.4 9.5E-13 3.2E-17 143.3 9.4 122 521-644 21-146 (361)
120 3e6j_A Variable lymphocyte rec 99.4 2.8E-12 9.7E-17 129.9 12.3 127 489-619 39-166 (229)
121 2v9t_B SLIT homolog 2 protein 99.4 2.6E-12 8.8E-17 129.4 11.5 125 519-644 33-162 (220)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 5.5E-12 1.9E-16 126.9 11.9 123 520-644 34-163 (220)
123 1w5s_A Origin recognition comp 99.3 5.9E-12 2E-16 139.7 13.0 257 166-426 21-373 (412)
124 2je0_A Acidic leucine-rich nuc 99.3 1.9E-12 6.6E-17 121.6 7.5 126 489-619 16-147 (149)
125 2ell_A Acidic leucine-rich nuc 99.3 4.8E-12 1.7E-16 121.5 9.8 129 488-621 22-156 (168)
126 3e6j_A Variable lymphocyte rec 99.3 6.9E-12 2.4E-16 127.1 9.9 103 518-621 40-144 (229)
127 2ell_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 122.2 7.3 127 515-644 21-157 (168)
128 2je0_A Acidic leucine-rich nuc 99.3 2.4E-12 8.1E-17 121.0 5.5 105 515-621 14-122 (149)
129 2xot_A Amphoterin-induced prot 99.3 7.4E-12 2.5E-16 136.2 9.2 174 543-725 20-202 (361)
130 1a9n_A U2A', U2A'; complex (nu 99.2 9.7E-12 3.3E-16 120.4 8.3 126 488-621 17-149 (176)
131 2wfh_A SLIT homolog 2 protein 99.2 4.5E-11 1.5E-15 117.5 11.6 121 521-644 13-136 (193)
132 3sb4_A Hypothetical leucine ri 99.2 2.9E-11 9.8E-16 129.8 11.0 285 488-792 23-328 (329)
133 1w8a_A SLIT protein; signaling 99.2 3.8E-11 1.3E-15 118.0 9.6 120 521-644 11-136 (192)
134 1a9n_A U2A', U2A'; complex (nu 99.2 1.1E-11 3.9E-16 119.9 5.3 128 514-645 15-151 (176)
135 4b8c_D Glucose-repressible alc 99.2 2.9E-12 9.9E-17 152.0 0.9 118 488-611 222-339 (727)
136 2qen_A Walker-type ATPase; unk 99.2 2.2E-10 7.5E-15 123.9 15.6 253 164-444 9-347 (350)
137 1w8a_A SLIT protein; signaling 99.1 7E-11 2.4E-15 116.0 8.0 103 519-622 30-136 (192)
138 2wfh_A SLIT homolog 2 protein 99.1 1.9E-10 6.6E-15 112.9 9.7 104 518-622 31-136 (193)
139 1ds9_A Outer arm dynein; leuci 99.1 8.4E-12 2.9E-16 123.4 -0.2 88 511-601 41-128 (198)
140 2fna_A Conserved hypothetical 99.1 3.8E-10 1.3E-14 122.4 12.6 249 165-444 11-355 (357)
141 2o6r_A Variable lymphocyte rec 99.1 6E-10 2.1E-14 107.7 10.9 83 518-600 28-112 (177)
142 2o6r_A Variable lymphocyte rec 99.0 4.9E-10 1.7E-14 108.3 9.6 127 474-604 12-140 (177)
143 2v1u_A Cell division control p 99.0 1.8E-08 6.1E-13 110.4 21.0 255 167-425 19-352 (387)
144 1fnn_A CDC6P, cell division co 99.0 1.8E-08 6.1E-13 110.5 20.9 256 167-426 17-353 (389)
145 1ds9_A Outer arm dynein; leuci 99.0 1.9E-11 6.6E-16 120.7 -3.8 111 488-606 46-158 (198)
146 2qby_B CDC6 homolog 3, cell di 99.0 1.4E-08 4.9E-13 111.1 18.7 254 167-426 20-341 (384)
147 4fdw_A Leucine rich hypothetic 98.9 1.2E-08 4.1E-13 112.0 17.3 262 489-796 112-381 (401)
148 3g39_A Variable lymphocyte rec 98.9 1.9E-09 6.6E-14 103.4 9.1 99 520-621 11-111 (170)
149 2r9u_A Variable lymphocyte rec 98.9 2.3E-09 7.9E-14 103.2 9.2 98 521-621 15-114 (174)
150 4fdw_A Leucine rich hypothetic 98.9 2.7E-08 9.2E-13 109.2 17.3 239 515-796 110-356 (401)
151 3sb4_A Hypothetical leucine ri 98.9 7.8E-09 2.7E-13 110.7 12.1 221 489-718 48-327 (329)
152 2r9u_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 102.3 7.8 102 493-601 15-118 (174)
153 3g39_A Variable lymphocyte rec 98.8 5.5E-09 1.9E-13 100.1 7.8 104 492-602 11-116 (170)
154 2qby_A CDC6 homolog 1, cell di 98.8 3.4E-08 1.2E-12 108.0 14.4 256 166-425 19-349 (386)
155 4fs7_A Uncharacterized protein 98.7 1.1E-07 3.6E-12 104.6 15.3 280 488-794 69-375 (394)
156 1njg_A DNA polymerase III subu 98.6 1.5E-07 5E-12 95.6 12.0 124 167-300 23-167 (250)
157 3un9_A NLR family member X1; l 98.6 1.1E-08 3.6E-13 111.3 2.8 41 630-670 207-249 (372)
158 3un9_A NLR family member X1; l 98.6 1.1E-08 3.7E-13 111.2 1.5 172 517-710 71-261 (372)
159 2ifg_A High affinity nerve gro 98.5 1.1E-07 3.9E-12 102.4 8.8 86 514-600 27-115 (347)
160 4fs7_A Uncharacterized protein 98.5 9.7E-07 3.3E-11 96.9 15.2 263 509-793 62-351 (394)
161 2chg_A Replication factor C sm 98.5 7.5E-07 2.6E-11 88.9 11.6 123 167-300 17-143 (226)
162 2ifg_A High affinity nerve gro 98.4 2.5E-07 8.6E-12 99.7 8.0 98 522-622 12-113 (347)
163 2ra8_A Uncharacterized protein 98.4 9.2E-08 3.2E-12 103.0 1.9 145 652-804 164-328 (362)
164 2ra8_A Uncharacterized protein 98.3 1.5E-07 5.2E-12 101.3 2.3 106 488-596 105-227 (362)
165 1hqc_A RUVB; extended AAA-ATPa 98.3 5.7E-07 1.9E-11 95.8 6.5 89 166-273 11-102 (324)
166 1sxj_B Activator 1 37 kDa subu 98.3 1.4E-06 4.9E-11 92.6 8.7 123 167-300 21-148 (323)
167 1io0_A Tropomodulin; LRR prote 98.2 1.6E-06 5.6E-11 84.0 5.8 110 511-621 29-160 (185)
168 4gt6_A Cell surface protein; l 98.1 6.1E-05 2.1E-09 82.4 18.5 289 488-797 61-369 (394)
169 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.5E-11 82.7 4.0 87 689-775 62-153 (176)
170 1io0_A Tropomodulin; LRR prote 98.1 2.2E-06 7.5E-11 83.1 4.5 112 488-600 34-163 (185)
171 1jbk_A CLPB protein; beta barr 98.0 8.8E-06 3E-10 78.9 7.4 44 167-212 22-65 (195)
172 1iqp_A RFCS; clamp loader, ext 98.0 9.2E-06 3.1E-10 86.4 7.9 120 167-300 25-151 (327)
173 3te6_A Regulatory protein SIR3 98.0 1.6E-05 5.4E-10 83.2 9.0 103 169-272 22-143 (318)
174 4gt6_A Cell surface protein; l 98.0 6.3E-05 2.2E-09 82.3 14.1 304 470-794 65-387 (394)
175 3n70_A Transport activator; si 97.9 2.3E-05 7.9E-10 72.4 7.2 111 168-298 2-115 (145)
176 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4E-10 76.1 4.4 84 712-796 61-150 (176)
177 3rw6_A Nuclear RNA export fact 97.7 5.7E-06 2E-10 84.4 1.0 64 539-604 168-236 (267)
178 3h4m_A Proteasome-activating n 97.7 5E-05 1.7E-09 79.0 7.8 48 165-212 15-73 (285)
179 2p65_A Hypothetical protein PF 97.6 0.0001 3.6E-09 70.8 7.7 44 167-212 22-65 (187)
180 4h09_A Hypothetical leucine ri 97.6 0.00066 2.2E-08 73.6 15.0 104 657-769 237-341 (379)
181 3rw6_A Nuclear RNA export fact 97.6 5.3E-05 1.8E-09 77.2 5.7 82 511-594 163-257 (267)
182 1jr3_A DNA polymerase III subu 97.6 0.00025 8.5E-09 76.8 11.1 119 167-300 16-160 (373)
183 3co5_A Putative two-component 97.6 4E-05 1.4E-09 70.6 4.0 47 167-213 4-50 (143)
184 2chq_A Replication factor C sm 97.5 8.9E-05 3.1E-09 78.3 6.6 119 167-300 17-143 (319)
185 3ec2_A DNA replication protein 97.5 4.6E-05 1.6E-09 73.3 3.9 117 172-297 19-141 (180)
186 3syl_A Protein CBBX; photosynt 97.5 4E-05 1.4E-09 80.7 3.7 124 168-300 32-180 (309)
187 2w58_A DNAI, primosome compone 97.4 0.00022 7.6E-09 69.8 7.3 95 168-272 26-126 (202)
188 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00034 1.2E-08 71.5 8.9 47 166-212 5-61 (262)
189 4h09_A Hypothetical leucine ri 97.4 0.0019 6.4E-08 70.0 15.1 134 608-753 213-347 (379)
190 3eie_A Vacuolar protein sortin 97.4 0.00062 2.1E-08 72.0 10.7 48 165-212 16-73 (322)
191 1sxj_D Activator 1 41 kDa subu 97.3 0.00026 8.7E-09 76.0 7.5 132 166-299 36-173 (353)
192 3bos_A Putative DNA replicatio 97.3 7.5E-05 2.6E-09 75.2 3.1 60 167-230 28-90 (242)
193 3u61_B DNA polymerase accessor 97.3 0.00067 2.3E-08 71.8 10.1 118 166-300 25-147 (324)
194 2z4s_A Chromosomal replication 97.3 0.00041 1.4E-08 76.7 8.5 121 168-298 106-236 (440)
195 1d2n_A N-ethylmaleimide-sensit 97.3 0.00082 2.8E-08 69.2 10.4 46 167-212 33-86 (272)
196 3d8b_A Fidgetin-like protein 1 97.3 0.00053 1.8E-08 73.7 8.9 47 166-212 83-139 (357)
197 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0021 7E-08 67.9 12.2 48 165-212 10-67 (322)
198 3cf0_A Transitional endoplasmi 97.2 0.0011 3.8E-08 69.3 10.1 93 166-272 14-119 (301)
199 1sxj_A Activator 1 95 kDa subu 97.1 0.00071 2.4E-08 76.5 8.2 101 166-272 38-159 (516)
200 3pfi_A Holliday junction ATP-d 97.1 0.001 3.5E-08 70.8 9.0 47 166-212 28-77 (338)
201 2zan_A Vacuolar protein sortin 97.1 0.0019 6.7E-08 71.3 11.2 48 165-212 132-189 (444)
202 1sxj_E Activator 1 40 kDa subu 97.1 0.00074 2.5E-08 72.4 7.4 44 167-212 14-58 (354)
203 3uk6_A RUVB-like 2; hexameric 97.1 0.0022 7.4E-08 69.2 11.2 47 166-212 43-92 (368)
204 3pvs_A Replication-associated 97.0 0.0014 4.7E-08 72.4 9.3 102 166-284 25-131 (447)
205 2qp9_X Vacuolar protein sortin 97.0 0.0021 7.2E-08 68.8 10.4 47 166-212 50-106 (355)
206 3b9p_A CG5977-PA, isoform A; A 97.0 0.0024 8.4E-08 66.5 10.7 47 166-212 20-76 (297)
207 1l8q_A Chromosomal replication 97.0 0.0014 4.7E-08 69.4 8.6 114 176-299 23-141 (324)
208 3vfd_A Spastin; ATPase, microt 96.9 0.0026 8.9E-08 69.1 10.4 48 165-212 113-170 (389)
209 2bjv_A PSP operon transcriptio 96.9 0.00071 2.4E-08 69.3 5.6 47 167-213 6-52 (265)
210 1sxj_C Activator 1 40 kDa subu 96.9 0.0019 6.5E-08 68.8 8.8 119 167-299 25-150 (340)
211 4fcw_A Chaperone protein CLPB; 96.9 0.0006 2.1E-08 71.6 4.4 113 168-283 18-143 (311)
212 1lv7_A FTSH; alpha/beta domain 96.8 0.0023 8E-08 65.1 8.5 47 166-212 11-67 (257)
213 3hu3_A Transitional endoplasmi 96.8 0.0037 1.3E-07 69.6 10.7 46 167-212 204-260 (489)
214 2kjq_A DNAA-related protein; s 96.8 0.00047 1.6E-08 63.7 2.9 84 190-297 36-123 (149)
215 3pxg_A Negative regulator of g 96.8 0.0019 6.6E-08 71.9 8.2 44 167-212 180-223 (468)
216 1ojl_A Transcriptional regulat 96.7 0.004 1.4E-07 65.1 9.3 46 167-212 2-47 (304)
217 2ce7_A Cell division protein F 96.7 0.004 1.4E-07 68.9 9.4 122 166-302 15-167 (476)
218 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0084 2.9E-07 71.3 12.8 44 167-212 186-229 (758)
219 2gno_A DNA polymerase III, gam 96.6 0.0095 3.2E-07 62.0 11.5 117 171-299 1-122 (305)
220 1a5t_A Delta prime, HOLB; zinc 96.4 0.022 7.4E-07 60.3 12.5 117 173-300 8-149 (334)
221 1qvr_A CLPB protein; coiled co 96.4 0.0041 1.4E-07 74.9 7.5 44 167-212 170-213 (854)
222 3pxi_A Negative regulator of g 96.2 0.0071 2.4E-07 71.8 8.1 44 167-212 180-223 (758)
223 2cvh_A DNA repair and recombin 96.2 0.025 8.6E-07 55.5 11.0 45 189-238 19-63 (220)
224 3lw7_A Adenylate kinase relate 96.2 0.016 5.3E-07 54.6 9.0 94 191-301 2-114 (179)
225 2qgz_A Helicase loader, putati 96.1 0.0041 1.4E-07 65.0 5.0 89 174-272 135-225 (308)
226 3t15_A Ribulose bisphosphate c 96.1 0.012 4.1E-07 61.0 8.2 24 189-212 35-58 (293)
227 2dhr_A FTSH; AAA+ protein, hex 95.9 0.024 8.2E-07 63.0 10.3 49 164-212 28-86 (499)
228 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0032 1.1E-07 65.1 2.8 64 190-272 123-193 (331)
229 4b4t_J 26S protease regulatory 95.8 0.0066 2.2E-07 65.1 5.1 91 164-271 145-251 (405)
230 4b4t_L 26S protease subunit RP 95.8 0.012 4.2E-07 63.9 7.2 121 165-302 179-333 (437)
231 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0097 3.3E-07 57.2 5.6 85 512-597 35-135 (197)
232 4b4t_H 26S protease regulatory 95.8 0.0075 2.6E-07 65.6 5.2 91 164-271 206-312 (467)
233 3m6a_A ATP-dependent protease 95.8 0.015 5.1E-07 65.9 8.0 46 167-212 81-130 (543)
234 4b4t_K 26S protease regulatory 95.7 0.0095 3.2E-07 64.7 5.9 91 164-271 169-275 (428)
235 3cf2_A TER ATPase, transitiona 95.6 0.032 1.1E-06 65.4 10.2 93 164-271 201-307 (806)
236 3pxi_A Negative regulator of g 95.6 0.015 5E-07 69.1 7.3 46 167-212 491-543 (758)
237 1n0w_A DNA repair protein RAD5 95.5 0.041 1.4E-06 55.0 9.3 66 180-246 14-83 (243)
238 4b4t_M 26S protease regulatory 95.5 0.0096 3.3E-07 64.8 4.6 55 164-220 178-243 (434)
239 4b4t_I 26S protease regulatory 95.4 0.013 4.5E-07 63.0 5.4 55 164-220 179-244 (437)
240 1ypw_A Transitional endoplasmi 95.4 0.013 4.4E-07 69.8 5.9 47 166-212 203-260 (806)
241 3c8u_A Fructokinase; YP_612366 95.2 0.014 4.6E-07 57.2 4.4 38 175-212 7-44 (208)
242 2z43_A DNA repair and recombin 95.2 0.065 2.2E-06 56.3 9.9 66 181-247 98-167 (324)
243 1rz3_A Hypothetical protein rb 95.2 0.019 6.4E-07 55.8 5.3 41 172-212 3-44 (201)
244 1in4_A RUVB, holliday junction 95.1 0.01 3.5E-07 62.9 3.4 46 167-212 25-73 (334)
245 2pze_A Cystic fibrosis transme 95.1 0.24 8.3E-06 49.0 13.2 51 252-302 139-193 (229)
246 2cbz_A Multidrug resistance-as 95.1 0.11 3.9E-06 51.6 10.9 24 190-213 31-54 (237)
247 1g5t_A COB(I)alamin adenosyltr 95.1 0.035 1.2E-06 53.1 6.7 108 190-299 28-163 (196)
248 3hr8_A Protein RECA; alpha and 95.0 0.046 1.6E-06 57.9 8.2 88 177-271 47-149 (356)
249 1v5w_A DMC1, meiotic recombina 95.0 0.12 4E-06 54.8 11.4 67 180-247 112-182 (343)
250 1qvr_A CLPB protein; coiled co 94.9 0.028 9.5E-07 67.6 7.0 128 168-298 559-710 (854)
251 1ofh_A ATP-dependent HSL prote 94.9 0.011 3.7E-07 61.7 3.1 46 167-212 15-72 (310)
252 2i1q_A DNA repair and recombin 94.9 0.069 2.4E-06 56.1 9.3 66 181-247 89-168 (322)
253 3io5_A Recombination and repai 94.8 0.13 4.6E-06 52.9 10.5 73 192-271 30-121 (333)
254 2r62_A Cell division protease 94.8 0.011 3.9E-07 60.3 2.7 47 166-212 10-66 (268)
255 4a74_A DNA repair and recombin 94.6 0.18 6.2E-06 49.6 11.1 47 189-235 24-74 (231)
256 3jvv_A Twitching mobility prot 94.6 0.0095 3.2E-07 63.4 1.5 106 191-302 124-234 (356)
257 1pgv_A TMD-1, tropomodulin TMD 94.6 0.044 1.5E-06 52.6 6.0 111 488-599 39-168 (197)
258 3kb2_A SPBC2 prophage-derived 94.5 0.018 6E-07 54.2 3.0 22 191-212 2-23 (173)
259 1r6b_X CLPA protein; AAA+, N-t 94.4 0.1 3.5E-06 61.9 10.1 46 167-212 458-510 (758)
260 3hws_A ATP-dependent CLP prote 94.4 0.025 8.5E-07 60.6 4.3 45 168-212 16-73 (363)
261 1xp8_A RECA protein, recombina 94.4 0.097 3.3E-06 55.8 8.8 89 176-271 59-162 (366)
262 2c9o_A RUVB-like 1; hexameric 94.4 0.037 1.3E-06 61.3 5.8 47 166-212 36-85 (456)
263 1qhx_A CPT, protein (chloramph 94.3 0.02 6.9E-07 54.2 3.0 22 191-212 4-25 (178)
264 1zp6_A Hypothetical protein AT 94.3 0.023 7.8E-07 54.5 3.3 24 190-213 9-32 (191)
265 3lda_A DNA repair protein RAD5 94.3 0.13 4.6E-06 55.3 9.6 69 178-247 166-238 (400)
266 2pjz_A Hypothetical protein ST 94.3 0.2 6.8E-06 50.7 10.4 22 191-212 31-52 (263)
267 1pzn_A RAD51, DNA repair and r 94.2 0.16 5.5E-06 53.8 10.2 63 182-245 123-189 (349)
268 3rfe_A Platelet glycoprotein I 94.2 0.046 1.6E-06 48.8 5.0 54 521-576 11-66 (130)
269 3vaa_A Shikimate kinase, SK; s 94.2 0.023 7.7E-07 55.1 3.1 23 190-212 25-47 (199)
270 1odf_A YGR205W, hypothetical 3 94.1 0.046 1.6E-06 56.3 5.5 26 187-212 28-53 (290)
271 2r44_A Uncharacterized protein 94.0 0.031 1.1E-06 59.0 4.1 42 167-212 27-68 (331)
272 1ly1_A Polynucleotide kinase; 94.0 0.026 8.9E-07 53.4 3.2 22 191-212 3-24 (181)
273 2zr9_A Protein RECA, recombina 94.0 0.12 4.1E-06 54.8 8.5 57 177-235 47-104 (349)
274 2ga8_A Hypothetical 39.9 kDa p 94.0 0.043 1.5E-06 57.7 4.9 43 170-212 2-46 (359)
275 3rfe_A Platelet glycoprotein I 93.9 0.042 1.4E-06 49.1 4.1 54 544-600 11-67 (130)
276 3nbx_X ATPase RAVA; AAA+ ATPas 93.9 0.042 1.4E-06 61.2 5.0 41 168-212 23-63 (500)
277 2x8a_A Nuclear valosin-contain 93.9 0.03 1E-06 57.3 3.5 47 165-212 8-66 (274)
278 1kag_A SKI, shikimate kinase I 93.8 0.026 8.7E-07 53.2 2.6 22 191-212 5-26 (173)
279 1u94_A RECA protein, recombina 93.8 0.12 4E-06 54.9 7.9 58 176-235 48-106 (356)
280 1zuh_A Shikimate kinase; alpha 93.7 0.03 1E-06 52.5 2.9 24 189-212 6-29 (168)
281 1ixz_A ATP-dependent metallopr 93.7 0.036 1.2E-06 55.9 3.7 47 166-212 15-71 (254)
282 3trf_A Shikimate kinase, SK; a 93.7 0.031 1.1E-06 53.3 3.0 23 190-212 5-27 (185)
283 1kgd_A CASK, peripheral plasma 93.6 0.034 1.2E-06 52.9 3.2 23 190-212 5-27 (180)
284 1knq_A Gluconate kinase; ALFA/ 93.6 0.047 1.6E-06 51.4 4.1 23 190-212 8-30 (175)
285 2orw_A Thymidine kinase; TMTK, 93.6 0.0098 3.3E-07 56.9 -0.8 102 191-300 4-114 (184)
286 1nks_A Adenylate kinase; therm 93.6 0.034 1.2E-06 53.3 3.1 22 191-212 2-23 (194)
287 2ck3_D ATP synthase subunit be 93.4 0.17 6E-06 55.0 8.6 81 190-272 153-264 (482)
288 2b8t_A Thymidine kinase; deoxy 93.4 0.04 1.4E-06 54.2 3.2 103 190-300 12-127 (223)
289 2bdt_A BH3686; alpha-beta prot 93.3 0.044 1.5E-06 52.5 3.4 22 191-212 3-24 (189)
290 3t61_A Gluconokinase; PSI-biol 93.3 0.031 1.1E-06 54.2 2.3 23 190-212 18-40 (202)
291 4eun_A Thermoresistant glucoki 93.3 0.04 1.4E-06 53.3 3.1 23 190-212 29-51 (200)
292 3tui_C Methionine import ATP-b 93.3 0.33 1.1E-05 51.4 10.3 52 251-302 171-227 (366)
293 1fx0_B ATP synthase beta chain 93.3 0.15 5E-06 55.9 7.7 81 190-272 165-277 (498)
294 3fwy_A Light-independent proto 93.3 0.045 1.5E-06 57.1 3.6 24 189-212 47-70 (314)
295 2qt1_A Nicotinamide riboside k 93.3 0.049 1.7E-06 53.0 3.7 24 189-212 20-43 (207)
296 3uie_A Adenylyl-sulfate kinase 93.3 0.049 1.7E-06 52.7 3.7 23 190-212 25-47 (200)
297 2if2_A Dephospho-COA kinase; a 93.3 0.038 1.3E-06 53.7 2.9 22 191-212 2-23 (204)
298 3ice_A Transcription terminati 93.3 0.038 1.3E-06 58.4 3.0 87 178-272 163-272 (422)
299 4gp7_A Metallophosphoesterase; 93.2 0.044 1.5E-06 51.6 3.1 23 190-212 9-31 (171)
300 1kht_A Adenylate kinase; phosp 93.2 0.04 1.4E-06 52.7 2.9 22 191-212 4-25 (192)
301 2rhm_A Putative kinase; P-loop 93.2 0.046 1.6E-06 52.4 3.4 23 190-212 5-27 (193)
302 3tr0_A Guanylate kinase, GMP k 93.2 0.043 1.5E-06 53.2 3.1 22 191-212 8-29 (205)
303 1y63_A LMAJ004144AAA protein; 93.2 0.046 1.6E-06 52.1 3.3 23 190-212 10-32 (184)
304 1um8_A ATP-dependent CLP prote 93.1 0.06 2E-06 57.9 4.5 46 167-212 21-94 (376)
305 1iy2_A ATP-dependent metallopr 93.1 0.046 1.6E-06 56.1 3.4 49 164-212 37-95 (278)
306 3tlx_A Adenylate kinase 2; str 93.1 0.059 2E-06 54.0 4.2 39 174-212 13-51 (243)
307 2plr_A DTMP kinase, probable t 93.1 0.093 3.2E-06 51.0 5.5 22 191-212 5-26 (213)
308 1uj2_A Uridine-cytidine kinase 93.1 0.047 1.6E-06 55.1 3.4 24 189-212 21-44 (252)
309 2jaq_A Deoxyguanosine kinase; 93.1 0.042 1.4E-06 53.2 2.9 21 192-212 2-22 (205)
310 3iij_A Coilin-interacting nucl 93.1 0.037 1.3E-06 52.5 2.4 23 190-212 11-33 (180)
311 1ukz_A Uridylate kinase; trans 93.1 0.052 1.8E-06 52.6 3.5 24 189-212 14-37 (203)
312 1jjv_A Dephospho-COA kinase; P 93.1 0.051 1.8E-06 52.8 3.5 22 191-212 3-24 (206)
313 1uf9_A TT1252 protein; P-loop, 93.0 0.05 1.7E-06 52.6 3.4 25 188-212 6-30 (203)
314 1gvn_B Zeta; postsegregational 93.0 0.08 2.7E-06 54.5 5.0 38 175-212 15-55 (287)
315 3dm5_A SRP54, signal recogniti 93.0 0.44 1.5E-05 51.8 10.9 24 189-212 99-122 (443)
316 1via_A Shikimate kinase; struc 93.0 0.038 1.3E-06 52.1 2.3 22 191-212 5-26 (175)
317 1tev_A UMP-CMP kinase; ploop, 92.9 0.051 1.7E-06 52.1 3.2 23 190-212 3-25 (196)
318 2ze6_A Isopentenyl transferase 92.9 0.05 1.7E-06 54.9 3.2 22 191-212 2-23 (253)
319 1ye8_A Protein THEP1, hypothet 92.9 0.053 1.8E-06 51.4 3.2 22 192-213 2-23 (178)
320 3a00_A Guanylate kinase, GMP k 92.9 0.044 1.5E-06 52.4 2.6 22 191-212 2-23 (186)
321 2j41_A Guanylate kinase; GMP, 92.9 0.051 1.8E-06 52.7 3.2 23 190-212 6-28 (207)
322 1sky_E F1-ATPase, F1-ATP synth 92.9 0.12 4.1E-06 56.4 6.3 80 191-272 152-256 (473)
323 2c95_A Adenylate kinase 1; tra 92.8 0.052 1.8E-06 52.1 3.1 23 190-212 9-31 (196)
324 2hf9_A Probable hydrogenase ni 92.8 0.084 2.9E-06 52.0 4.7 36 176-213 26-61 (226)
325 3asz_A Uridine kinase; cytidin 92.8 0.058 2E-06 52.6 3.5 23 190-212 6-28 (211)
326 2p5t_B PEZT; postsegregational 92.8 0.073 2.5E-06 53.7 4.3 40 173-212 12-54 (253)
327 2iyv_A Shikimate kinase, SK; t 92.8 0.04 1.4E-06 52.5 2.2 22 191-212 3-24 (184)
328 3a4m_A L-seryl-tRNA(SEC) kinas 92.8 0.056 1.9E-06 54.8 3.4 23 190-212 4-26 (260)
329 3cm0_A Adenylate kinase; ATP-b 92.8 0.055 1.9E-06 51.5 3.1 23 190-212 4-26 (186)
330 2yvu_A Probable adenylyl-sulfa 92.7 0.056 1.9E-06 51.6 3.2 24 189-212 12-35 (186)
331 2qor_A Guanylate kinase; phosp 92.7 0.046 1.6E-06 53.2 2.5 23 190-212 12-34 (204)
332 1cke_A CK, MSSA, protein (cyti 92.6 0.058 2E-06 53.2 3.2 22 191-212 6-27 (227)
333 2bbw_A Adenylate kinase 4, AK4 92.6 0.061 2.1E-06 54.0 3.4 23 190-212 27-49 (246)
334 3tau_A Guanylate kinase, GMP k 92.6 0.066 2.2E-06 52.2 3.5 23 190-212 8-30 (208)
335 2grj_A Dephospho-COA kinase; T 92.6 0.062 2.1E-06 51.6 3.2 24 189-212 11-34 (192)
336 1g8p_A Magnesium-chelatase 38 92.5 0.046 1.6E-06 58.1 2.5 45 166-212 23-67 (350)
337 3p32_A Probable GTPase RV1496/ 92.5 0.11 3.7E-06 55.4 5.4 37 176-212 65-101 (355)
338 1e6c_A Shikimate kinase; phosp 92.5 0.048 1.6E-06 51.2 2.4 22 191-212 3-24 (173)
339 1xjc_A MOBB protein homolog; s 92.5 0.066 2.3E-06 50.0 3.2 24 189-212 3-26 (169)
340 2wsm_A Hydrogenase expression/ 92.5 0.077 2.6E-06 52.0 4.0 40 171-212 13-52 (221)
341 2bwj_A Adenylate kinase 5; pho 92.5 0.055 1.9E-06 52.1 2.8 23 190-212 12-34 (199)
342 2pt5_A Shikimate kinase, SK; a 92.5 0.061 2.1E-06 50.2 2.9 21 192-212 2-22 (168)
343 1qf9_A UMP/CMP kinase, protein 92.4 0.061 2.1E-06 51.4 3.0 23 190-212 6-28 (194)
344 3tqc_A Pantothenate kinase; bi 92.4 0.099 3.4E-06 54.5 4.7 39 174-212 74-114 (321)
345 2vli_A Antibiotic resistance p 92.3 0.048 1.7E-06 51.7 2.1 23 190-212 5-27 (183)
346 2cdn_A Adenylate kinase; phosp 92.3 0.064 2.2E-06 51.9 3.0 23 190-212 20-42 (201)
347 2pbr_A DTMP kinase, thymidylat 92.3 0.065 2.2E-06 51.3 3.0 21 192-212 2-22 (195)
348 3upu_A ATP-dependent DNA helic 92.2 0.18 6.2E-06 55.7 6.9 118 169-299 23-165 (459)
349 1lvg_A Guanylate kinase, GMP k 92.2 0.059 2E-06 52.1 2.6 23 190-212 4-26 (198)
350 1ex7_A Guanylate kinase; subst 92.1 0.054 1.9E-06 51.6 2.1 22 191-212 2-23 (186)
351 2z0h_A DTMP kinase, thymidylat 92.1 0.15 5.1E-06 48.9 5.3 21 192-212 2-22 (197)
352 1znw_A Guanylate kinase, GMP k 92.0 0.079 2.7E-06 51.6 3.2 23 190-212 20-42 (207)
353 3aez_A Pantothenate kinase; tr 92.0 0.088 3E-06 54.8 3.7 24 189-212 89-112 (312)
354 1htw_A HI0065; nucleotide-bind 91.9 0.091 3.1E-06 48.6 3.4 23 190-212 33-55 (158)
355 3e70_C DPA, signal recognition 91.9 0.12 4.1E-06 54.2 4.7 24 189-212 128-151 (328)
356 1g41_A Heat shock protein HSLU 91.8 0.12 4.1E-06 56.3 4.7 46 167-212 15-72 (444)
357 2ewv_A Twitching motility prot 91.8 0.25 8.6E-06 52.8 7.2 107 190-302 136-247 (372)
358 2f6r_A COA synthase, bifunctio 91.8 0.087 3E-06 54.1 3.4 24 189-212 74-97 (281)
359 2jeo_A Uridine-cytidine kinase 91.8 0.1 3.4E-06 52.4 3.8 23 190-212 25-47 (245)
360 2wwf_A Thymidilate kinase, put 91.7 0.077 2.6E-06 51.6 2.8 23 190-212 10-32 (212)
361 4e22_A Cytidylate kinase; P-lo 91.7 0.085 2.9E-06 53.2 3.2 23 190-212 27-49 (252)
362 3hjn_A DTMP kinase, thymidylat 91.6 0.47 1.6E-05 45.6 8.3 51 192-244 2-52 (197)
363 1zd8_A GTP:AMP phosphotransfer 91.6 0.081 2.8E-06 52.3 2.9 23 190-212 7-29 (227)
364 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.22 7.4E-06 52.3 6.3 103 191-300 172-276 (330)
365 3umf_A Adenylate kinase; rossm 91.6 0.099 3.4E-06 51.2 3.4 24 189-212 28-51 (217)
366 1aky_A Adenylate kinase; ATP:A 91.6 0.091 3.1E-06 51.6 3.2 23 190-212 4-26 (220)
367 2pez_A Bifunctional 3'-phospho 91.6 0.094 3.2E-06 49.6 3.2 23 190-212 5-27 (179)
368 1nn5_A Similar to deoxythymidy 91.5 0.094 3.2E-06 51.1 3.2 23 190-212 9-31 (215)
369 3ney_A 55 kDa erythrocyte memb 91.5 0.097 3.3E-06 50.3 3.2 23 190-212 19-41 (197)
370 1z6g_A Guanylate kinase; struc 91.5 0.079 2.7E-06 52.1 2.6 23 190-212 23-45 (218)
371 2r9v_A ATP synthase subunit al 91.5 0.2 7E-06 54.8 6.0 88 190-281 175-288 (515)
372 3vr4_D V-type sodium ATPase su 91.5 0.17 5.7E-06 54.8 5.2 80 191-272 152-259 (465)
373 1zu4_A FTSY; GTPase, signal re 91.5 0.18 6.3E-06 52.6 5.5 24 189-212 104-127 (320)
374 2qe7_A ATP synthase subunit al 91.5 0.22 7.6E-06 54.4 6.3 87 190-280 162-274 (502)
375 2f1r_A Molybdopterin-guanine d 91.4 0.07 2.4E-06 50.2 2.0 23 190-212 2-24 (171)
376 2v54_A DTMP kinase, thymidylat 91.4 0.092 3.2E-06 50.7 2.9 23 190-212 4-26 (204)
377 3fb4_A Adenylate kinase; psych 91.4 0.093 3.2E-06 51.3 3.0 21 192-212 2-22 (216)
378 1tue_A Replication protein E1; 91.3 0.15 5.2E-06 48.9 4.2 36 176-212 45-80 (212)
379 1zak_A Adenylate kinase; ATP:A 91.2 0.088 3E-06 51.8 2.6 23 190-212 5-27 (222)
380 2i3b_A HCR-ntpase, human cance 91.2 0.091 3.1E-06 50.3 2.6 21 192-212 3-23 (189)
381 1m7g_A Adenylylsulfate kinase; 91.2 0.11 3.6E-06 50.8 3.2 23 190-212 25-47 (211)
382 1gtv_A TMK, thymidylate kinase 91.2 0.055 1.9E-06 52.8 1.1 22 191-212 1-22 (214)
383 3dl0_A Adenylate kinase; phosp 91.2 0.1 3.4E-06 51.1 3.0 21 192-212 2-22 (216)
384 1vht_A Dephospho-COA kinase; s 91.2 0.12 4.2E-06 50.6 3.6 23 190-212 4-26 (218)
385 3nwj_A ATSK2; P loop, shikimat 91.1 0.083 2.8E-06 53.0 2.4 22 191-212 49-70 (250)
386 1rj9_A FTSY, signal recognitio 91.1 0.13 4.3E-06 53.4 3.7 24 189-212 101-124 (304)
387 3b85_A Phosphate starvation-in 91.0 0.16 5.5E-06 49.4 4.2 22 191-212 23-44 (208)
388 1vma_A Cell division protein F 91.0 0.18 6.3E-06 52.1 4.9 24 189-212 103-126 (306)
389 3bh0_A DNAB-like replicative h 91.0 0.38 1.3E-05 50.1 7.3 56 185-244 63-118 (315)
390 2ehv_A Hypothetical protein PH 90.9 0.11 3.8E-06 51.9 3.2 23 190-212 30-52 (251)
391 3l0o_A Transcription terminati 90.9 0.51 1.7E-05 49.8 8.0 35 177-212 163-197 (427)
392 1s96_A Guanylate kinase, GMP k 90.9 0.12 4E-06 50.8 3.1 106 190-302 16-143 (219)
393 1sq5_A Pantothenate kinase; P- 90.8 0.23 7.8E-06 51.7 5.5 24 189-212 79-102 (308)
394 2onk_A Molybdate/tungstate ABC 90.8 0.13 4.3E-06 51.4 3.3 22 191-212 25-46 (240)
395 3ake_A Cytidylate kinase; CMP 90.8 0.12 4E-06 50.1 3.0 21 192-212 4-24 (208)
396 3tif_A Uncharacterized ABC tra 90.7 0.21 7E-06 49.7 4.7 23 190-212 31-53 (235)
397 3lnc_A Guanylate kinase, GMP k 90.6 0.089 3E-06 52.2 2.0 23 190-212 27-50 (231)
398 1np6_A Molybdopterin-guanine d 90.5 0.14 4.9E-06 48.1 3.2 23 190-212 6-28 (174)
399 2px0_A Flagellar biosynthesis 90.5 0.14 4.7E-06 52.9 3.4 24 189-212 104-127 (296)
400 3k1j_A LON protease, ATP-depen 90.5 0.25 8.4E-06 56.8 5.8 42 167-212 41-82 (604)
401 3be4_A Adenylate kinase; malar 90.4 0.11 3.8E-06 50.9 2.5 23 190-212 5-27 (217)
402 3gfo_A Cobalt import ATP-bindi 90.4 0.22 7.4E-06 50.8 4.7 23 190-212 34-56 (275)
403 2pcj_A ABC transporter, lipopr 90.3 0.13 4.5E-06 50.7 2.9 23 190-212 30-52 (224)
404 1fx0_A ATP synthase alpha chai 90.3 0.21 7E-06 54.8 4.7 86 190-279 163-274 (507)
405 1b0u_A Histidine permease; ABC 90.2 0.23 7.7E-06 50.3 4.7 23 190-212 32-54 (262)
406 1e4v_A Adenylate kinase; trans 90.2 0.13 4.6E-06 50.2 2.9 21 192-212 2-22 (214)
407 1yrb_A ATP(GTP)binding protein 90.2 0.16 5.6E-06 51.2 3.6 24 189-212 13-36 (262)
408 3b9q_A Chloroplast SRP recepto 90.2 0.16 5.6E-06 52.5 3.6 23 190-212 100-122 (302)
409 3oaa_A ATP synthase subunit al 90.2 0.46 1.6E-05 51.9 7.2 79 190-272 162-265 (513)
410 2xb4_A Adenylate kinase; ATP-b 90.1 0.14 4.8E-06 50.5 2.9 21 192-212 2-22 (223)
411 3d3q_A TRNA delta(2)-isopenten 90.1 0.15 5E-06 53.4 3.2 22 191-212 8-29 (340)
412 2c61_A A-type ATP synthase non 90.1 0.18 6.1E-06 54.9 3.9 82 190-271 152-259 (469)
413 1ak2_A Adenylate kinase isoenz 90.0 0.16 5.5E-06 50.4 3.3 23 190-212 16-38 (233)
414 2yhs_A FTSY, cell division pro 90.0 0.26 8.8E-06 54.2 5.1 42 189-233 292-333 (503)
415 1svm_A Large T antigen; AAA+ f 90.0 0.27 9.1E-06 52.5 5.2 36 177-212 156-191 (377)
416 4eaq_A DTMP kinase, thymidylat 90.0 0.25 8.6E-06 48.8 4.7 23 190-212 26-48 (229)
417 2wji_A Ferrous iron transport 90.0 0.17 5.9E-06 46.9 3.3 23 191-213 4-26 (165)
418 2xxa_A Signal recognition part 89.9 0.26 8.9E-06 53.7 5.1 39 174-212 77-122 (433)
419 1cr0_A DNA primase/helicase; R 89.8 0.37 1.2E-05 49.7 6.0 51 190-244 35-86 (296)
420 2zej_A Dardarin, leucine-rich 89.8 0.16 5.4E-06 48.2 2.9 22 192-213 4-25 (184)
421 2ff7_A Alpha-hemolysin translo 89.8 0.27 9.1E-06 49.3 4.7 23 190-212 35-57 (247)
422 2dyk_A GTP-binding protein; GT 89.7 0.19 6.6E-06 46.0 3.4 23 191-213 2-24 (161)
423 2ck3_A ATP synthase subunit al 89.7 0.32 1.1E-05 53.3 5.6 91 190-280 162-282 (510)
424 1vpl_A ABC transporter, ATP-bi 89.7 0.27 9.1E-06 49.5 4.7 23 190-212 41-63 (256)
425 3r20_A Cytidylate kinase; stru 89.6 0.18 6E-06 49.9 3.2 23 190-212 9-31 (233)
426 1ji0_A ABC transporter; ATP bi 89.6 0.17 5.7E-06 50.5 3.1 23 190-212 32-54 (240)
427 1oix_A RAS-related protein RAB 89.6 0.17 5.9E-06 48.3 3.1 24 190-213 29-52 (191)
428 3gqb_B V-type ATP synthase bet 89.6 0.22 7.4E-06 53.9 4.0 83 190-272 147-262 (464)
429 2olj_A Amino acid ABC transpor 89.6 0.17 5.8E-06 51.2 3.1 23 190-212 50-72 (263)
430 1g6h_A High-affinity branched- 89.6 0.17 5.8E-06 51.1 3.1 23 190-212 33-55 (257)
431 1sgw_A Putative ABC transporte 89.6 0.14 5E-06 49.9 2.5 23 190-212 35-57 (214)
432 3llm_A ATP-dependent RNA helic 89.5 2 6.8E-05 42.3 11.0 68 175-246 65-134 (235)
433 2d2e_A SUFC protein; ABC-ATPas 89.5 0.18 6.1E-06 50.7 3.2 23 190-212 29-51 (250)
434 3mfy_A V-type ATP synthase alp 89.5 0.51 1.7E-05 52.1 6.9 48 190-241 227-275 (588)
435 1q3t_A Cytidylate kinase; nucl 89.5 0.2 6.8E-06 49.8 3.5 24 189-212 15-38 (236)
436 2ixe_A Antigen peptide transpo 89.5 0.28 9.7E-06 49.8 4.7 23 190-212 45-67 (271)
437 1fzq_A ADP-ribosylation factor 89.5 0.24 8.1E-06 46.8 3.9 26 188-213 14-39 (181)
438 1mv5_A LMRA, multidrug resista 89.4 0.19 6.4E-06 50.3 3.3 23 190-212 28-50 (243)
439 1j8m_F SRP54, signal recogniti 89.4 0.26 8.9E-06 50.8 4.4 23 190-212 98-120 (297)
440 4g1u_C Hemin import ATP-bindin 89.3 0.18 6.1E-06 51.2 3.0 23 190-212 37-59 (266)
441 3kl4_A SRP54, signal recogniti 89.3 0.26 9E-06 53.5 4.5 24 189-212 96-119 (433)
442 1ltq_A Polynucleotide kinase; 89.2 0.18 6.2E-06 52.1 3.2 22 191-212 3-24 (301)
443 2yz2_A Putative ABC transporte 89.2 0.3 1E-05 49.5 4.7 23 190-212 33-55 (266)
444 2w0m_A SSO2452; RECA, SSPF, un 89.2 0.19 6.6E-06 49.4 3.2 38 190-229 23-60 (235)
445 1tq4_A IIGP1, interferon-induc 89.2 0.18 6.1E-06 54.5 3.1 35 178-212 57-91 (413)
446 2zu0_C Probable ATP-dependent 89.2 0.19 6.6E-06 51.0 3.2 24 190-213 46-69 (267)
447 3sr0_A Adenylate kinase; phosp 89.1 0.19 6.5E-06 48.7 3.0 21 192-212 2-22 (206)
448 3crm_A TRNA delta(2)-isopenten 89.1 0.19 6.5E-06 52.2 3.1 22 191-212 6-27 (323)
449 3end_A Light-independent proto 89.1 0.22 7.4E-06 51.7 3.6 25 188-212 39-63 (307)
450 3a8t_A Adenylate isopentenyltr 89.1 0.21 7.2E-06 52.0 3.4 24 190-213 40-63 (339)
451 2f9l_A RAB11B, member RAS onco 89.1 0.19 6.5E-06 48.3 3.0 24 190-213 5-28 (199)
452 2ghi_A Transport protein; mult 89.1 0.19 6.6E-06 50.7 3.1 23 190-212 46-68 (260)
453 2iw3_A Elongation factor 3A; a 89.0 1.7 5.9E-05 51.9 11.5 108 190-302 461-608 (986)
454 2v3c_C SRP54, signal recogniti 89.0 0.22 7.6E-06 54.2 3.7 23 190-212 99-121 (432)
455 2qi9_C Vitamin B12 import ATP- 88.9 0.2 6.8E-06 50.2 3.1 23 190-212 26-48 (249)
456 3cf2_A TER ATPase, transitiona 88.9 0.48 1.6E-05 55.6 6.6 93 164-271 474-580 (806)
457 1cp2_A CP2, nitrogenase iron p 88.9 0.21 7.3E-06 50.6 3.3 22 191-212 2-23 (269)
458 2og2_A Putative signal recogni 88.9 0.23 7.9E-06 52.6 3.6 23 190-212 157-179 (359)
459 2afh_E Nitrogenase iron protei 88.8 0.22 7.7E-06 51.1 3.5 23 190-212 2-24 (289)
460 2wjg_A FEOB, ferrous iron tran 88.8 0.23 7.8E-06 47.0 3.3 24 190-213 7-30 (188)
461 2qm8_A GTPase/ATPase; G protei 88.8 0.36 1.2E-05 50.8 5.0 34 179-212 44-77 (337)
462 2nq2_C Hypothetical ABC transp 88.8 0.21 7.1E-06 50.2 3.1 24 190-213 31-54 (253)
463 3v9p_A DTMP kinase, thymidylat 88.7 0.58 2E-05 46.0 6.1 23 190-212 25-47 (227)
464 2ihy_A ABC transporter, ATP-bi 88.6 0.22 7.4E-06 50.9 3.1 23 190-212 47-69 (279)
465 1z2a_A RAS-related protein RAB 88.5 0.22 7.6E-06 45.9 2.9 24 190-213 5-28 (168)
466 2ged_A SR-beta, signal recogni 88.5 0.26 9E-06 46.8 3.5 25 189-213 47-71 (193)
467 2nzj_A GTP-binding protein REM 88.5 0.23 8E-06 46.1 3.1 24 190-213 4-27 (175)
468 2ce2_X GTPase HRAS; signaling 88.4 0.21 7.2E-06 45.8 2.6 22 192-213 5-26 (166)
469 2eyu_A Twitching motility prot 88.3 0.26 8.7E-06 49.9 3.4 107 190-302 25-136 (261)
470 2p67_A LAO/AO transport system 88.3 0.38 1.3E-05 50.8 4.9 25 188-212 54-78 (341)
471 3e1s_A Exodeoxyribonuclease V, 88.3 0.55 1.9E-05 53.3 6.5 107 173-295 191-312 (574)
472 2lkc_A Translation initiation 88.3 0.38 1.3E-05 44.8 4.4 25 189-213 7-31 (178)
473 1ls1_A Signal recognition part 88.3 0.26 8.8E-06 50.8 3.5 23 190-212 98-120 (295)
474 1a7j_A Phosphoribulokinase; tr 88.2 0.14 4.9E-06 52.6 1.5 23 190-212 5-27 (290)
475 3zvl_A Bifunctional polynucleo 88.2 0.24 8.3E-06 53.9 3.4 24 189-212 257-280 (416)
476 2j37_W Signal recognition part 88.2 0.39 1.3E-05 53.3 5.0 24 189-212 100-123 (504)
477 2e87_A Hypothetical protein PH 88.2 9.8 0.00033 40.0 16.0 25 189-213 166-190 (357)
478 2dr3_A UPF0273 protein PH0284; 88.2 0.31 1.1E-05 48.4 3.9 47 190-240 23-69 (247)
479 3con_A GTPase NRAS; structural 88.1 0.23 7.8E-06 47.1 2.8 23 191-213 22-44 (190)
480 2vp4_A Deoxynucleoside kinase; 88.1 0.22 7.7E-06 49.2 2.8 24 189-212 19-42 (230)
481 2gj8_A MNME, tRNA modification 88.1 0.25 8.5E-06 46.2 2.9 23 191-213 5-27 (172)
482 1nlf_A Regulatory protein REPA 88.0 0.24 8.1E-06 50.6 3.0 23 190-212 30-52 (279)
483 3q85_A GTP-binding protein REM 88.0 0.26 9E-06 45.5 3.1 22 191-212 3-24 (169)
484 3exa_A TRNA delta(2)-isopenten 88.0 0.26 8.8E-06 50.8 3.1 23 190-212 3-25 (322)
485 2v9p_A Replication protein E1; 88.0 0.42 1.4E-05 49.3 4.8 24 189-212 125-148 (305)
486 1u8z_A RAS-related protein RAL 87.9 0.25 8.7E-06 45.4 2.9 23 191-213 5-27 (168)
487 3def_A T7I23.11 protein; chlor 87.9 0.48 1.7E-05 47.8 5.2 38 176-213 22-59 (262)
488 1c1y_A RAS-related protein RAP 87.9 0.3 1E-05 44.9 3.4 22 192-213 5-26 (167)
489 2erx_A GTP-binding protein DI- 87.9 0.27 9.2E-06 45.5 3.0 23 191-213 4-26 (172)
490 3q72_A GTP-binding protein RAD 87.8 0.24 8.3E-06 45.6 2.7 22 192-213 4-25 (166)
491 1z08_A RAS-related protein RAB 87.7 0.31 1.1E-05 45.0 3.4 24 190-213 6-29 (170)
492 1u0j_A DNA replication protein 87.7 0.49 1.7E-05 47.5 4.9 34 179-212 93-126 (267)
493 4edh_A DTMP kinase, thymidylat 87.7 0.67 2.3E-05 45.1 5.8 23 190-212 6-28 (213)
494 3sop_A Neuronal-specific septi 87.6 0.27 9.3E-06 49.9 3.1 21 192-212 4-24 (270)
495 1h65_A Chloroplast outer envel 87.5 0.53 1.8E-05 47.8 5.3 39 175-213 24-62 (270)
496 1svi_A GTP-binding protein YSX 87.5 0.36 1.2E-05 45.9 3.8 25 189-213 22-46 (195)
497 3cmu_A Protein RECA, recombina 87.5 0.74 2.5E-05 59.1 7.4 86 179-271 1415-1515(2050)
498 2ocp_A DGK, deoxyguanosine kin 87.4 0.3 1E-05 48.7 3.2 23 190-212 2-24 (241)
499 3nh6_A ATP-binding cassette SU 87.4 0.24 8.2E-06 51.2 2.5 23 190-212 80-102 (306)
500 1z0j_A RAB-22, RAS-related pro 87.3 0.29 9.8E-06 45.2 2.9 23 191-213 7-29 (170)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-44 Score=416.98 Aligned_cols=268 Identities=17% Similarity=0.188 Sum_probs=220.0
Q ss_pred eechhhHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHHhc--CcccccccceeEEEEcCCCC--CHHHHHHHHHHH
Q 045113 170 VGLDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYS--GNYVKHYFDCHAWVQEPYTC--YADQILDIIIKF 244 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~ 244 (821)
|||+.++++|.++|..+ ++..++|+|+|||||||||||+.+|+ +.+++.+|+.++||++++.+ +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 44689999999999999999999998 67899999999999999985 899999999999
Q ss_pred hCCch---------h------HHHHHHHhCCC-cEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh------
Q 045113 245 LMPSS---------R------LIILHEYLMTK-RYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV------ 302 (821)
Q Consensus 245 l~~~~---------~------~~~l~~~l~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~------ 302 (821)
++... + ...+++.|+++ ||||||||||+.+++ .+.. .+||+||||||++.|+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 87641 1 57888999996 999999999998765 2211 1699999999998887
Q ss_pred ---------------cccc-cccCCcCCCCccchHHHHHHHcCCchHHHHHhhcc----ccccc----------chhccc
Q 045113 303 ---------------TLFQ-FENGQNIRLDLVPTGGPLRVTYQGWPFHILYHGSI----SLEEN----------KREAIA 352 (821)
Q Consensus 303 ---------------~lf~-~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~----~~~~~----------~~~~i~ 352 (821)
+||. .......++.+.+++++|+++|+|+||||+++|+. .|+.. ...++.
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~ 364 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVE 364 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHH
Confidence 4555 11111124677889999999999999999999943 22111 235677
Q ss_pred cchhHHHHhhhcCChhhHHHHh-----------hcccCCCCceechhhHHHHHHHc--CCCCC-----ChHHHHHHHHHH
Q 045113 353 KPIFLQSVAYCMLPFPLKLCCL-----------YLPVFPAHLEISTRQLYQLWIAE--GFIPD-----NSEATAEKYLEQ 414 (821)
Q Consensus 353 ~~~~~l~~sy~~L~~~~k~cfl-----------~~s~Fp~~~~i~~~~Li~~W~ae--g~i~~-----~~~~~~~~~~~~ 414 (821)
+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.. +.+++++ ||++
T Consensus 365 ---~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~ 436 (549)
T 2a5y_B 365 ---CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKR 436 (549)
T ss_dssp ---CCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHH
T ss_pred ---HHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHH
Confidence 8999999999999999999 999999999999 8999999 99975 4788888 9999
Q ss_pred HHhCCceeeeecCCCCCEEEEEeCcchHHHHHHhccccCcce
Q 045113 415 LINRGFVEVKKRRAGGTINTCSIRSRCWPSLLVVTLNAEFVF 456 (821)
Q Consensus 415 L~~r~ll~~~~~~~~~~~~~~~mHdlv~dla~~~~~~~~e~f 456 (821)
|+++||++....+ ...+|+|||++|++|++++. ++++
T Consensus 437 L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~--~~~~ 473 (549)
T 2a5y_B 437 LSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVD--AQTI 473 (549)
T ss_dssp TTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSC--THHH
T ss_pred HHHcCCeeEecCC---CceEEEeChHHHHHHHHHHH--HHHH
Confidence 9999999987643 33679999999999999998 6543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-35 Score=376.85 Aligned_cols=266 Identities=20% Similarity=0.206 Sum_probs=213.8
Q ss_pred CCCCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-cccc-ceeEEEEcCCCCC--HHHHH
Q 045113 163 SFKNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-KHYF-DCHAWVQEPYTCY--ADQIL 238 (821)
Q Consensus 163 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~--~~~~~ 238 (821)
+.....||||++++++|.++|...++..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 345567999999999999999877677999999999999999999999997544 4545 5778999998654 34456
Q ss_pred HHHHHHhCCch--------h----HHHHHHHhCCC--cEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh--
Q 045113 239 DIIIKFLMPSS--------R----LIILHEYLMTK--RYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV-- 302 (821)
Q Consensus 239 ~~i~~~l~~~~--------~----~~~l~~~l~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~-- 302 (821)
..++..+.... + ...++..+.++ ||||||||||+..+|..+ .+||+||||||++.++
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 67777776532 1 56677777766 999999999998877653 5789999999999887
Q ss_pred --------------------cccc-cccCCcCCCCccchHHHHHHHcCCchHHHHHhhcc------cc------------
Q 045113 303 --------------------TLFQ-FENGQNIRLDLVPTGGPLRVTYQGWPFHILYHGSI------SL------------ 343 (821)
Q Consensus 303 --------------------~lf~-~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~------~~------------ 343 (821)
+||. +.. ...+...+.+++|+++|+|+||||+++|.. .|
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~--~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHT--SCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhC--CChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhh
Confidence 2232 111 134566788999999999999999999921 11
Q ss_pred -ccc-----chhccccchhHHHHhhhcCChhhHHHHhhcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHh
Q 045113 344 -EEN-----KREAIAKPIFLQSVAYCMLPFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLIN 417 (821)
Q Consensus 344 -~~~-----~~~~i~~~~~~l~~sy~~L~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~ 417 (821)
.+. ..+.+. .++.+||+.||+++|.||+|||+||+++.|+.+.++.+|.++ ++.++.++++|++
T Consensus 351 ~~~~~~~~~~~~~~~---~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALD---EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVN 420 (1249)
T ss_dssp CCSSCTTCTTHHHHH---HHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHH
T ss_pred hhcccccccchHHHH---HHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHh
Confidence 000 224577 999999999999999999999999999999999999999754 5678999999999
Q ss_pred CCceeeeecCCCCCEEEEEeCcchHHHHHHhcc
Q 045113 418 RGFVEVKKRRAGGTINTCSIRSRCWPSLLVVTL 450 (821)
Q Consensus 418 r~ll~~~~~~~~~~~~~~~mHdlv~dla~~~~~ 450 (821)
+||++.... +...+|+|||++|++++..+.
T Consensus 421 ~sl~~~~~~---~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 421 KSLLFCNRN---GKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp TTSCEEEES---SSSEEEECCHHHHHHHHHHTG
T ss_pred ccceEEecC---CCceEEEecHHHHHHHHhhhh
Confidence 999997653 344679999999999999876
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.3e-35 Score=340.72 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=199.2
Q ss_pred CeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccce-eEEEEcCCCCCHHHHHHHHHHHhC
Q 045113 168 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDC-HAWVQEPYTCYADQILDIIIKFLM 246 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 246 (821)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|+..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35999999999999998643 3899999999999999999999988788999996 999999999998888888777421
Q ss_pred C-------c--------hh----HHHHHHHh---CCCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhhcc
Q 045113 247 P-------S--------SR----LIILHEYL---MTKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTVTL 304 (821)
Q Consensus 247 ~-------~--------~~----~~~l~~~l---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~~l 304 (821)
. . .+ ...+++.| .++|+||||||||+.+.|+.+. +||+||||||++.++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 1 0 01 45566655 6899999999999998888762 68999999999987721
Q ss_pred ------cccc--c-------CCc-------CCCCccchHHHHHHHcCCchHHHHHhhccc---------ccccchhcccc
Q 045113 305 ------FQFE--N-------GQN-------IRLDLVPTGGPLRVTYQGWPFHILYHGSIS---------LEENKREAIAK 353 (821)
Q Consensus 305 ------f~~~--~-------~~~-------~~~~~~~~~~~i~~~c~glPLai~~~g~~~---------~~~~~~~~i~~ 353 (821)
+... . ++. ......++..+ .|+|+||||+++|+.. |.......+.
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~- 356 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT- 356 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHH-
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHH-
Confidence 1111 0 000 00112333333 4999999999999321 2111346788
Q ss_pred chhHHHHhhhcCChhh-HHHHhhcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhCCceeeeecCCCCCE
Q 045113 354 PIFLQSVAYCMLPFPL-KLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTI 432 (821)
Q Consensus 354 ~~~~l~~sy~~L~~~~-k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~ 432 (821)
.+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.++.++++|+++||++... ..
T Consensus 357 --aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~ 423 (1221)
T 1vt4_I 357 --TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KE 423 (1221)
T ss_dssp --HHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SS
T ss_pred --HHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CC
Confidence 99999999999999 99999999999999999999999999987 245889999999999999842 12
Q ss_pred EEEEeCcchHHHHH
Q 045113 433 NTCSIRSRCWPSLL 446 (821)
Q Consensus 433 ~~~~mHdlv~dla~ 446 (821)
.+|+|||++++++.
T Consensus 424 ~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 424 STISIPSIYLELKV 437 (1221)
T ss_dssp SEEBCCCHHHHHHH
T ss_pred CEEEehHHHHHHhc
Confidence 57999999999663
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=304.16 Aligned_cols=263 Identities=19% Similarity=0.222 Sum_probs=202.3
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-cccc-ceeEEEEcCCCCCHHHHHHH--
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-KHYF-DCHAWVQEPYTCYADQILDI-- 240 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~-- 240 (821)
....||||+.++++|.++|....+..++|+|+||||+||||||+.++++.++ +.+| +.++|++++.. +...+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 4567999999999999999865556899999999999999999999997666 7889 58999999876 33333333
Q ss_pred -HHHHhCCc--------hh----HHHHHHHhCC--CcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh---
Q 045113 241 -IIKFLMPS--------SR----LIILHEYLMT--KRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV--- 302 (821)
Q Consensus 241 -i~~~l~~~--------~~----~~~l~~~l~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~--- 302 (821)
++..++.. .+ ...+...+.+ +++||||||+|+...+.. + .+|++||||||+..++
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHhc
Confidence 34444421 11 4566666655 799999999999766543 2 4689999999998866
Q ss_pred -------------------cccc-cccCCcCCCCccchHHHHHHHcCCchHHHHHhhcc------cccc--c--------
Q 045113 303 -------------------TLFQ-FENGQNIRLDLVPTGGPLRVTYQGWPFHILYHGSI------SLEE--N-------- 346 (821)
Q Consensus 303 -------------------~lf~-~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~------~~~~--~-------- 346 (821)
++|. .... ......+.+.+|+++|+|+||||..+|.. .|.. .
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFK 351 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCC
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCC--CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHH
Confidence 2333 1111 12234678999999999999999999921 1210 0
Q ss_pred --------chhccccchhHHHHhhhcCChhhHHHHhhcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhC
Q 045113 347 --------KREAIAKPIFLQSVAYCMLPFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINR 418 (821)
Q Consensus 347 --------~~~~i~~~~~~l~~sy~~L~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r 418 (821)
....+. .++..||+.||++.|.||++||+||+++.|+.+.++.+|.++ .+.+..++++|+++
T Consensus 352 ~~~~~~~~~~~~l~---~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 352 RIRKSSSYDYEALD---EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNK 421 (591)
T ss_dssp CSSCCCSSCCHHHH---HHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHT
T ss_pred HhhhccccchHHHH---HHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhC
Confidence 123567 899999999999999999999999999999999999999653 34578999999999
Q ss_pred CceeeeecCCCCCEEEEEeCcchHHHHHHhcc
Q 045113 419 GFVEVKKRRAGGTINTCSIRSRCWPSLLVVTL 450 (821)
Q Consensus 419 ~ll~~~~~~~~~~~~~~~mHdlv~dla~~~~~ 450 (821)
||++.... +....|+||+++++++.....
T Consensus 422 ~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 422 SLLFCDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp TSSEEEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred cCeEEecC---CCccEEEEcHHHHHHHHhhhh
Confidence 99986543 344689999999999988743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=3.7e-27 Score=283.70 Aligned_cols=320 Identities=18% Similarity=0.140 Sum_probs=149.0
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC-cccccccCC--------------------------
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN-QYPSEIENL-------------------------- 540 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~l-------------------------- 540 (821)
.+++|++|.+.++... ...+...+..+++|++|+|++|.+. .+|..+.++
T Consensus 316 ~l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 316 SCSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GCTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred cCCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 5555555555555432 1133334555555555555555544 444443333
Q ss_pred -CCceEEeecCCCCc-cccHHHHhccccceEEecCCcccc-cchhhhccCccCceeecCCcccCCCCCCCcCCCCCccee
Q 045113 541 -SLLRYLKLNIPSLK-SLPLSFFNYLLNLYTLDMPFSYID-HTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFI 617 (821)
Q Consensus 541 -~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L 617 (821)
++|++|++++|.+. .+|..+. ++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|..++.+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 33444444444443 4444454 5555555555555443 335555555555555555555555555555555555555
Q ss_pred ccccC---CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEE
Q 045113 618 SALYP---CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLS 694 (821)
Q Consensus 618 ~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~ 694 (821)
++..| +..+.. +.++++|+.|++++| ...+.+|..++.+++|+.|+++.| .+.......+..+++|+.|+
T Consensus 472 ~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N----~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 472 ILDFNDLTGEIPSG-LSNCTNLNWISLSNN--RLTGEIPKWIGRLENLAILKLSNN----SFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp ECCSSCCCSCCCGG-GGGCTTCCEEECCSS--CCCSCCCGGGGGCTTCCEEECCSS----CCEEECCGGGGGCTTCCEEE
T ss_pred EecCCcccCcCCHH-HhcCCCCCEEEccCC--ccCCcCChHHhcCCCCCEEECCCC----cccCcCCHHHcCCCCCCEEE
Confidence 55552 233334 555555555555555 233344445555555555555543 11111111134445555555
Q ss_pred EecccCCCCCccc-------------------------------------------------------------------
Q 045113 695 FSNTDLMDDPMPA------------------------------------------------------------------- 707 (821)
Q Consensus 695 L~~~~l~~~~~~~------------------------------------------------------------------- 707 (821)
+++|.+++..|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 5555443322221
Q ss_pred ---ccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCC
Q 045113 708 ---LEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCI 784 (821)
Q Consensus 708 ---l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l 784 (821)
++.+++|+.|+|++|.+.+.. +...+.+++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..+.++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred chhhhccccccEEECcCCcccccC-CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 222344555555555554432 2224455555555555554333555555555556666665555444555555555
Q ss_pred CCCCEEEEeCCc---------------------------HHHHHHHhhcccCccceeeeccCC
Q 045113 785 KSLNNFNCWWPQ---------------------------PELRQKLREFEDKEQCGIQLYPYG 820 (821)
Q Consensus 785 ~~L~~L~l~~c~---------------------------~~~~~~~~~~~~~~~~~i~~ip~~ 820 (821)
++|++|++++|+ ..+ ..+....+++|++|+|+|.+
T Consensus 704 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC-------------
T ss_pred CCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCcccc
Confidence 666666555442 111 13455677899999999864
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=6.5e-26 Score=266.21 Aligned_cols=322 Identities=18% Similarity=0.135 Sum_probs=199.1
Q ss_pred CCCceeEEEEEcCCCccccc--C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAYLD--D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~--~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~ 542 (821)
.+..++++.+.++....... . .+++|++|.+.++.... ..+..|..+++|++|+|++|.++.+ |..++++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 45678888888776654433 2 78888888888876643 4556778888888888888888765 677888888
Q ss_pred ceEEeecCCCCcccc-HHHHhccccceEEecCCcccc--cchhhhccCccCceeecCCcccCCCCCCCcCCCC-------
Q 045113 543 LRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYID--HTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLE------- 612 (821)
Q Consensus 543 Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~------- 612 (821)
|++|++++|.+..+| ..++ ++++|++|++++|.+. .+|..++++++|++|++++|.+.+..|..++.++
T Consensus 106 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred CCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 888888888887666 5566 8888888888888776 3677888888888888887766443332222111
Q ss_pred --------------------Ccceec------------------------------------------------------
Q 045113 613 --------------------NLNFIS------------------------------------------------------ 618 (821)
Q Consensus 613 --------------------~L~~L~------------------------------------------------------ 618 (821)
+|+.|+
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 122222
Q ss_pred -------------------------------------------------cccC-CcchhhhcCCCCCCCeEEEecc----
Q 045113 619 -------------------------------------------------ALYP-CCCTKDLLGRLPNLRNLRIQGD---- 644 (821)
Q Consensus 619 -------------------------------------------------~~~~-~~~~~~~l~~l~~L~~L~l~~~---- 644 (821)
+..+ -..++. + .+++|+.|+++++
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCE
T ss_pred heeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCcc
Confidence 1110 000001 1 2333333333333
Q ss_pred ------------------cccchhHHHHHccCCCCcCEEEeecCC---------CCCCCCeeEecc-----------cCC
Q 045113 645 ------------------LSYNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKIILAE-----------YVF 686 (821)
Q Consensus 645 ------------------~~~~~~~l~~~l~~~~~L~~L~l~~~~---------~~~~L~~l~l~~-----------~~~ 686 (821)
.-......+..+..+++|+.|+++.|. .+++|+.|.+.+ +..
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 100111124455566667777666531 345666666654 345
Q ss_pred CCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce-eeccccccccce
Q 045113 687 PHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW-TMGTGAMPKLEC 765 (821)
Q Consensus 687 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~ 765 (821)
+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..++..+..+++|+.|++++|. +..+ +..+..+++|+.
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQL 501 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhcccccCCE
Confidence 67777777777776666666677777777777777766654444445666777777777763 3333 334556666666
Q ss_pred eEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 766 LIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 766 L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|++++|......|..+.++++|+.|++++|.
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 6666665444445566666666666666654
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-25 Score=248.32 Aligned_cols=290 Identities=16% Similarity=0.166 Sum_probs=220.1
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHH-HHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLS-FFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~ 565 (821)
..++++.|.+.++.... .+..+|..+++|++|+|++|.++.++ ..++.+++|++|++++|.+..+|+. +. +++
T Consensus 43 ~l~~l~~l~l~~~~l~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESE----ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCT
T ss_pred ccCCceEEEecCCchhh----CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc-CCC
Confidence 56788888887776543 55667788888888888888887665 4778888888888888888866544 55 888
Q ss_pred cceEEecCCcccccchhhh-ccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecc
Q 045113 566 NLYTLDMPFSYIDHTADEF-WKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 566 ~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
+|++|++++|.+..+|..+ .++++|++|++++|.+....|..++.+++|++|++..+.-.... ++.+++|+.|+++++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYN 196 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccc
Confidence 8888888888888887764 77888888888888886666667888888888888774211113 556677777777776
Q ss_pred cccchhHHHHHccCCCCcCEEEeecCC-------CCCCCCeeEecc--------cCCCCCcceEEEecccCCCCCccccc
Q 045113 645 LSYNQSLLSKSLCRLSCLESLKLANES-------KMPRLSKIILAE--------YVFPHSLTHLSFSNTDLMDDPMPALE 709 (821)
Q Consensus 645 ~~~~~~~l~~~l~~~~~L~~L~l~~~~-------~~~~L~~l~l~~--------~~~~~~L~~L~L~~~~l~~~~~~~l~ 709 (821)
. .. .+....+|+.|+++++. ..++|+.|.+.+ +..+++|+.|+|++|.+.+..+..++
T Consensus 197 ~--l~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 197 L--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp C--CS-----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c--cc-----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 3 11 12334566666666532 234566666555 66789999999999998877788899
Q ss_pred CCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCE
Q 045113 710 KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNN 789 (821)
Q Consensus 710 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~ 789 (821)
.+++|+.|+|++|.+.+ ++.....+++|++|++++| .+..++..+..+++|+.|++++|+ +..+| +..+++|+.
T Consensus 270 ~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~ 343 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKN 343 (390)
T ss_dssp TCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSE
T ss_pred ccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--chhhccCCE
Confidence 99999999999888765 3444567899999999998 577888778889999999999997 45565 678999999
Q ss_pred EEEeCCc
Q 045113 790 FNCWWPQ 796 (821)
Q Consensus 790 L~l~~c~ 796 (821)
|+++++|
T Consensus 344 L~l~~N~ 350 (390)
T 3o6n_A 344 LTLSHND 350 (390)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9999987
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-25 Score=261.04 Aligned_cols=290 Identities=16% Similarity=0.165 Sum_probs=234.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHH-Hhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSF-FNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~~L~ 565 (821)
.+++++.|.+.++.... ++..+|..+++|++|+|++|.++.+| ..++.+++|++|+|++|.+..+|+.. + +++
T Consensus 49 ~l~~l~~l~l~~~~l~~----lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESE----ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCT
T ss_pred cCCCceEEEeeCCCCCC----cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCC
Confidence 67888999888876643 66778889999999999999988665 48899999999999999998777654 5 899
Q ss_pred cceEEecCCcccccchhh-hccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecc
Q 045113 566 NLYTLDMPFSYIDHTADE-FWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 566 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
+|++|+|++|.+..+|.. ++++++|++|++++|.+.+..|..++.+++|++|++..|.-.... ++.+++|+.|+++++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYN 202 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSS
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccC
Confidence 999999999999888876 488999999999999987777778999999999998885311123 566788888888887
Q ss_pred cccchhHHHHHccCCCCcCEEEeecCC-------CCCCCCeeEecc--------cCCCCCcceEEEecccCCCCCccccc
Q 045113 645 LSYNQSLLSKSLCRLSCLESLKLANES-------KMPRLSKIILAE--------YVFPHSLTHLSFSNTDLMDDPMPALE 709 (821)
Q Consensus 645 ~~~~~~~l~~~l~~~~~L~~L~l~~~~-------~~~~L~~l~l~~--------~~~~~~L~~L~L~~~~l~~~~~~~l~ 709 (821)
. .. .+....+|+.|++++|. .+++|+.|.+.+ +..+++|+.|+|++|.+.+..|..++
T Consensus 203 ~--l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 203 L--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp C--CS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c--cc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 3 11 23445677888877642 334677777665 67789999999999999888888999
Q ss_pred CCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCE
Q 045113 710 KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNN 789 (821)
Q Consensus 710 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~ 789 (821)
.+++|+.|+|++|.+.+ ++.....+++|+.|+|++| .+..+|..++.+++|+.|++++|. +..+| +..+++|+.
T Consensus 276 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~ 349 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKN 349 (597)
T ss_dssp TCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSE
T ss_pred CccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCE
Confidence 99999999999888876 3445577999999999998 567788778899999999999997 44554 678899999
Q ss_pred EEEeCCc
Q 045113 790 FNCWWPQ 796 (821)
Q Consensus 790 L~l~~c~ 796 (821)
|+++++|
T Consensus 350 L~l~~N~ 356 (597)
T 3oja_B 350 LTLSHND 356 (597)
T ss_dssp EECCSSC
T ss_pred EEeeCCC
Confidence 9999987
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.3e-25 Score=266.73 Aligned_cols=268 Identities=18% Similarity=0.190 Sum_probs=127.7
Q ss_pred cCCceeEEEeCCCCCC-cccccccCCCCceEEeecCCC-Cc--cccHHHHhccc-------cceEEecCCcccccchh--
Q 045113 516 MYKLLRVLDLGSLVLN-QYPSEIENLSLLRYLKLNIPS-LK--SLPLSFFNYLL-------NLYTLDMPFSYIDHTAD-- 582 (821)
Q Consensus 516 ~~~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~-i~--~lp~~i~~~L~-------~L~~L~L~~~~l~~lp~-- 582 (821)
++++|++|+|++|.+. .+|..++++++|++|+|++|. +. .+|..++ ++. +|++|++++|.+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCcCCccCChh
Confidence 5555555555555433 445555555555555555554 44 2554444 444 55555555555445554
Q ss_pred hhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCC-CCeEEEecccccchhHHHHHccCC
Q 045113 583 EFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPN-LRNLRIQGDLSYNQSLLSKSLCRL 659 (821)
Q Consensus 583 ~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~~ 659 (821)
.++++++|++|++++|.+. .+| .++.+++|+.|++..| ...+.. +..+++ |+.|++++|. ...+|..+..+
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~---L~~lp~~~~~~ 641 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNK---LKYIPNIFNAK 641 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSC---CCSCCSCCCTT
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCCC---CCcCchhhhcc
Confidence 4555555555555555543 444 4555555555555442 223333 444444 5555555442 11233333222
Q ss_pred -------------------------------CCcCEEEeecCC----------CCCCCCeeEecc----------cC---
Q 045113 660 -------------------------------SCLESLKLANES----------KMPRLSKIILAE----------YV--- 685 (821)
Q Consensus 660 -------------------------------~~L~~L~l~~~~----------~~~~L~~l~l~~----------~~--- 685 (821)
++|+.|+++.|. .+++|+.|.+++ +.
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 244445544421 233444444443 00
Q ss_pred ----CCCCcceEEEecccCCCCCccccc--CCCCCCEEEEeccccCCCeeeecCCCCcccceeeecc------CCCccce
Q 045113 686 ----FPHSLTHLSFSNTDLMDDPMPALE--KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKS------MLWLEEW 753 (821)
Q Consensus 686 ----~~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l~~~ 753 (821)
++++|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+.+ ++.....+++|+.|+|++ |.....+
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 1115555555555544 3444444 55555555555555544 233334555555555544 2223344
Q ss_pred eeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 754 TMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 754 ~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|..+..+++|+.|++++|.. ..+|..+. ++|+.|++++|+
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred hHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 44455555555555555543 55555433 455555555554
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.1e-25 Score=249.88 Aligned_cols=320 Identities=16% Similarity=0.110 Sum_probs=249.8
Q ss_pred CCCceeEEEEEcCCCccc-cc-C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAY-LD-D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~-~~-~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~ 542 (821)
.+..++++.+..+..... +. . .+++|++|.+.++... ....+..|..+++|++|+|++|.++.+ |..++++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 457799999998876554 22 2 8999999999988764 124467789999999999999999855 778999999
Q ss_pred ceEEeecCCCCcc-ccHH--HHhccccceEEecCCcccccc-hhh-hccCccCceeecCCcccCCCCCCCcCCC--CCcc
Q 045113 543 LRYLKLNIPSLKS-LPLS--FFNYLLNLYTLDMPFSYIDHT-ADE-FWKMKKLRHLNFGSITLPAHPGNYCGSL--ENLN 615 (821)
Q Consensus 543 Lr~L~L~~~~i~~-lp~~--i~~~L~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~L~~~~~~~~~p~~i~~l--~~L~ 615 (821)
|++|++++|.+.. .|.. +. .+++|++|++++|.+..+ |.. +.++++|++|++++|.+.+..|..+..+ .+|+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFK-PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTT-TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred CCEEeCCCCCCCccccCccccc-CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999999999884 4444 77 899999999999988887 554 7899999999999999988778777766 6788
Q ss_pred eeccccC--Ccch---------hhhcCCCCCCCeEEEecccccchhHHHHHccC---CCCcCEEEeecCC----------
Q 045113 616 FISALYP--CCCT---------KDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCR---LSCLESLKLANES---------- 671 (821)
Q Consensus 616 ~L~~~~~--~~~~---------~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~---~~~L~~L~l~~~~---------- 671 (821)
.|++..+ .... .. +..+++|+.|+++++ ...+..+..+.. .++|+.|+++.+.
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGN-PFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCC-TTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccCcccccchhhcccccccc-ccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 8887773 1111 11 345678999999998 455555555433 3677777776431
Q ss_pred ------------CCCCCCeeEecc----------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCee
Q 045113 672 ------------KMPRLSKIILAE----------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKL 729 (821)
Q Consensus 672 ------------~~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 729 (821)
..++|+.+.+++ +..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+.+. .
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~ 339 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-D 339 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-C
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-C
Confidence 124566666655 67889999999999999877788999999999999998877543 3
Q ss_pred eecCCCCcccceeeeccCCCccce-eeccccccccceeEEeecCCCCCCcc-ccCCCCCCCEEEEeCCc
Q 045113 730 TCGSDGFPRLKVLHLKSMLWLEEW-TMGTGAMPKLECLIINPCAYLKKMPE-QLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 730 ~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~i~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 796 (821)
+..+..+++|++|+|++|. +..+ +..+..+++|+.|++++|. ++.+|. .+..+++|++|+++++|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 4456789999999999984 5555 6678899999999999986 445655 56899999999999754
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.7e-25 Score=269.14 Aligned_cols=315 Identities=17% Similarity=0.115 Sum_probs=202.0
Q ss_pred CceeEEEEEcCCCccccc-C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC---------------
Q 045113 469 NVKRFFALEQQSDFAYLD-D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN--------------- 531 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~~~-~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--------------- 531 (821)
...+++.+..+....... . .+++|++|.+.++.... ..+..+..+++|++|+|++|.+.
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS----CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC----cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 455666666554432211 2 56666666666665432 34455566666666666666554
Q ss_pred --------cccccccCC-CCceEEeecCCCCc-cccHHHHhccccceEEecCCcccc-cchhh-hccCccCceeecCCcc
Q 045113 532 --------QYPSEIENL-SLLRYLKLNIPSLK-SLPLSFFNYLLNLYTLDMPFSYID-HTADE-FWKMKKLRHLNFGSIT 599 (821)
Q Consensus 532 --------~lp~~i~~l-~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~-i~~l~~L~~L~L~~~~ 599 (821)
.+|..+..+ ++|++|++++|.+. .+|..+. ++++|++|++++|.+. .+|.. +.++++|++|++++|.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 334444332 45555555555544 4444444 5555555555555443 44443 4555555555555555
Q ss_pred cCCCCCCCcCCCC-CcceeccccC---CcchhhhcCC--CCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 600 LPAHPGNYCGSLE-NLNFISALYP---CCCTKDLLGR--LPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 600 ~~~~~p~~i~~l~-~L~~L~~~~~---~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
+.+.+|..+..++ +|++|++..+ +..+.. +.. +++|+.|++++| ...+.+|..+..+++|+.|+++.|
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N--- 428 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFN--- 428 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSS---
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCC---
Confidence 5445555555544 5555555542 223333 333 455666666655 233345555666666666666543
Q ss_pred CCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce
Q 045113 674 PRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW 753 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 753 (821)
.+.......+..+++|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+.. +.....+++|++|+|++|.....+
T Consensus 429 -~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 429 -YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp -EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCC
T ss_pred -cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcC
Confidence 233333333677899999999999998889999999999999999988887754 344678899999999999766678
Q ss_pred eeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 754 TMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 754 ~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|..++.+++|+.|++++|.....+|..+.++++|+.|++++|+
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 8888999999999999998877899999999999999999875
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2.6e-25 Score=261.53 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=217.7
Q ss_pred CceeEEEEEcCCCc-cccc-C-CCCCceEEEeecCC-CCccchhhhHHhhcc------CCceeEEEeCCCCCCcccc--c
Q 045113 469 NVKRFFALEQQSDF-AYLD-D-YYPHLHSLLYFTSE-SDHLDHIDWQKICEM------YKLLRVLDLGSLVLNQYPS--E 536 (821)
Q Consensus 469 ~~~r~lsl~~~~~~-~~~~-~-~~~~LrsL~l~~~~-~~~~~~~~~~~~~~~------~~~Lr~L~L~~~~l~~lp~--~ 536 (821)
...+++.+..+... ..+. . .+++|++|.+.++. .. ....+..+.. +++|++|+|++|.++.+|. .
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~---~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS---GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC---HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc---cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 45667777765432 2222 2 67777777777765 32 1012333333 3777788888777777777 7
Q ss_pred ccCCCCceEEeecCCCCc-cccHHHHhccccceEEecCCcccccchhhhccCcc-CceeecCCcccCCCCCCCcCCCC--
Q 045113 537 IENLSLLRYLKLNIPSLK-SLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKK-LRHLNFGSITLPAHPGNYCGSLE-- 612 (821)
Q Consensus 537 i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~-L~~L~L~~~~~~~~~p~~i~~l~-- 612 (821)
++++++|++|++++|.+. .+| .+. .+++|++|++++|.+..+|..+.++++ |++|++++|.+. .+|..++.+.
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 777778888888877777 777 666 777888888887777777777777777 888888877775 6777666554
Q ss_pred CcceeccccC---CcchhhhcC-------CCCCCCeEEEecccccchhHHHHH-ccCCCCcCEEEeecCCCCCCCCeeEe
Q 045113 613 NLNFISALYP---CCCTKDLLG-------RLPNLRNLRIQGDLSYNQSLLSKS-LCRLSCLESLKLANESKMPRLSKIIL 681 (821)
Q Consensus 613 ~L~~L~~~~~---~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~~~~L~~l~l 681 (821)
+|+.|++..| +..+.. +. .+++|+.|++++|. .. .+|.. +..+++|+.|+++.| .+..+..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N----~l~~i~~ 474 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPLSSINLMGN----MLTEIPK 474 (636)
T ss_dssp CEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCCSEEECCSS----CCSBCCS
T ss_pred ccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCCCEEECCCC----CCCCcCH
Confidence 7777777774 233344 55 66677788887773 22 33333 345677888888764 3332222
Q ss_pred ccc-------CCCCCcceEEEecccCCCCCccccc--CCCCCCEEEEeccccCCCeeeecCCCCcccceeeecc------
Q 045113 682 AEY-------VFPHSLTHLSFSNTDLMDDPMPALE--KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKS------ 746 (821)
Q Consensus 682 ~~~-------~~~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~------ 746 (821)
..+ ..+++|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+.+ ++.....+++|+.|+|++
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCccccc
Confidence 111 22339999999999987 6777776 99999999999998887 455567899999999954
Q ss_pred CCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 747 MLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 747 ~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 444557788888999999999999986 88998765 899999999996
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=247.93 Aligned_cols=296 Identities=22% Similarity=0.197 Sum_probs=237.7
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccccHHHHhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 566 (821)
-.++++.|.+.++.... ..+..|..+++|++|+|++|.++.+ |..++++++|++|+|++|.+..+|.....++++
T Consensus 30 ~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 45689999999888753 4567789999999999999999865 778999999999999999999998764338999
Q ss_pred ceEEecCCcccccc-hhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEec
Q 045113 567 LYTLDMPFSYIDHT-ADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 567 L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~ 643 (821)
|++|++++|.+..+ |..+.++++|++|++++|.+....|..++.+++|++|++..+ ...+...+.++++|+.|++.+
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 99999999988777 567889999999999999997777788999999999999884 344444489999999999999
Q ss_pred ccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccc
Q 045113 644 DLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNS 723 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 723 (821)
+. .....+..+..+++|+.|+++. ++.+..+... .....+|+.|+|++|.++......+..+++|+.|+|++|.
T Consensus 186 n~--i~~~~~~~~~~l~~L~~L~l~~---~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 186 LN--INAIRDYSFKRLYRLKVLEISH---WPYLDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp CC--CCEECTTCSCSCTTCCEEEEEC---CTTCCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred Cc--CcEeChhhcccCcccceeeCCC---CccccccCcc-cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 84 3333344678889999999984 3344444322 3344599999999999886655678999999999999888
Q ss_pred cCCCeeeecCCCCcccceeeeccCCCccce-eeccccccccceeEEeecCCCCCCcc-ccCCCCCCCEEEEeCCc
Q 045113 724 YSGRKLTCGSDGFPRLKVLHLKSMLWLEEW-TMGTGAMPKLECLIINPCAYLKKMPE-QLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~i~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 796 (821)
+.+.. ...+..+++|+.|+|++|. +..+ +..+..+++|+.|++++|. ++.+|. .+..+++|++|+++++|
T Consensus 260 l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 260 ISTIE-GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEC-TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCccC-hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 76432 2346788999999999984 5544 5567889999999999996 455554 57889999999998765
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.4e-25 Score=257.14 Aligned_cols=323 Identities=18% Similarity=0.101 Sum_probs=208.5
Q ss_pred CCCceeEEEEEcCCCccccc--C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAYLD--D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~--~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~ 542 (821)
.+..++++.+..+....... . .+++|++|.+.++.... ..+..|..+++|++|+|++|.++.+| ..++++++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 34567777777766544322 2 77788888887776542 44556777777777777777776554 56777777
Q ss_pred ceEEeecCCCCccccH-HHHhccccceEEecCCccccc--chhhhccCccCceeecCCcccCCCCCCCcC----------
Q 045113 543 LRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDH--TADEFWKMKKLRHLNFGSITLPAHPGNYCG---------- 609 (821)
Q Consensus 543 Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~---------- 609 (821)
|++|++++|.+..+|. .++ ++++|++|++++|.+.. +|..++++++|++|++++|.+....|..++
T Consensus 102 L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred cccccccccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 7777777777776664 355 77777777777776654 466777777777777776655332222222
Q ss_pred --------------------------------------------------------------------------------
Q 045113 610 -------------------------------------------------------------------------------- 609 (821)
Q Consensus 610 -------------------------------------------------------------------------------- 609 (821)
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence
Q ss_pred -------------------CCCCcceeccccC--Ccchhhhc--------------------------------------
Q 045113 610 -------------------SLENLNFISALYP--CCCTKDLL-------------------------------------- 630 (821)
Q Consensus 610 -------------------~l~~L~~L~~~~~--~~~~~~~l-------------------------------------- 630 (821)
.+++|++|++..+ ...+.. +
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-CSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh-hccCCccEEeeccCcccccCcccccccCEEeCcCCcccc
Confidence 2233333333221 111111 1
Q ss_pred ----CCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC---------CCCCCCeeEecc-----------cCC
Q 045113 631 ----GRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKIILAE-----------YVF 686 (821)
Q Consensus 631 ----~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---------~~~~L~~l~l~~-----------~~~ 686 (821)
..+++|+.|+++++........+..+..+++|+.|+++.|. .+++|+.|.+.+ +..
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 12233333333333110111113445556666666666532 456677777655 456
Q ss_pred CCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce-eeccccccccce
Q 045113 687 PHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW-TMGTGAMPKLEC 765 (821)
Q Consensus 687 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~ 765 (821)
+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..++.....+++|+.|++++|. +..+ +..+..+++|+.
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCE
Confidence 78888888888887777777888899999999998887644455667889999999999985 5555 667889999999
Q ss_pred eEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 766 LIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 766 L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|++++|......|..+.++++|+.|+++++|
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9999996544445568899999999999854
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.8e-25 Score=262.93 Aligned_cols=299 Identities=15% Similarity=0.105 Sum_probs=207.8
Q ss_pred CCCCceEEEeecCCCCcc--c-hh----------hhHHhhc--cCCceeEEEeCCCCCC-cccccccCCCCceEEeecCC
Q 045113 488 YYPHLHSLLYFTSESDHL--D-HI----------DWQKICE--MYKLLRVLDLGSLVLN-QYPSEIENLSLLRYLKLNIP 551 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~--~-~~----------~~~~~~~--~~~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~ 551 (821)
.+++|++|.+.++..... . .+ ..+..+. ++++|++|+|++|.+. .+|..++++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 677777777777765420 0 00 0344445 7777888888777755 67777777777888888777
Q ss_pred C-Cc--cccHHHHhcc------ccceEEecCCcccccchh--hhccCccCceeecCCcccCCCCCCCcCCCCCcceeccc
Q 045113 552 S-LK--SLPLSFFNYL------LNLYTLDMPFSYIDHTAD--EFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISAL 620 (821)
Q Consensus 552 ~-i~--~lp~~i~~~L------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~ 620 (821)
. +. .+|..++ ++ ++|++|++++|.+..+|. .++++++|++|++++|.+.+.+| .++.+++|++|++.
T Consensus 284 ~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHH-hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 6 66 4777776 65 777888887777777777 77777778888877777766777 67777777777777
Q ss_pred cC--CcchhhhcCCCCC-CCeEEEecccccchhHHHHHccCCC--CcCEEEeecCC-----------------CCCCCCe
Q 045113 621 YP--CCCTKDLLGRLPN-LRNLRIQGDLSYNQSLLSKSLCRLS--CLESLKLANES-----------------KMPRLSK 678 (821)
Q Consensus 621 ~~--~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~-----------------~~~~L~~ 678 (821)
.| ...+.. +..+++ |+.|++++|. ...+|..+..++ +|+.|+++.|. ..++|+.
T Consensus 362 ~N~l~~lp~~-l~~l~~~L~~L~Ls~N~---l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 362 YNQITEIPAN-FCGFTEQVENLSFAHNK---LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp SSEEEECCTT-SEEECTTCCEEECCSSC---CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCccccccHh-hhhhcccCcEEEccCCc---CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 64 344445 667777 7777777763 224555555443 67777777642 1124555
Q ss_pred eEecc----------cCCCCCcceEEEecccCCCCCccc-ccC-------CCCCCEEEEeccccCCCeeeecCC--CCcc
Q 045113 679 IILAE----------YVFPHSLTHLSFSNTDLMDDPMPA-LEK-------LPLLQVLKLKQNSYSGRKLTCGSD--GFPR 738 (821)
Q Consensus 679 l~l~~----------~~~~~~L~~L~L~~~~l~~~~~~~-l~~-------l~~L~~L~L~~~~~~~~~~~~~~~--~~~~ 738 (821)
|.+++ +..+++|+.|+|++|.++ .++.. +.. +++|+.|+|++|.+.. ++.... .+++
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~l~~ 514 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPY 514 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB--CCGGGSTTTCTT
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCc--cChhhhhccCCC
Confidence 55554 335788889999988876 33333 222 3389999998887773 333343 7889
Q ss_pred cceeeeccCCCccceeeccccccccceeEEee------cCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 739 LKVLHLKSMLWLEEWTMGTGAMPKLECLIINP------CAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 739 L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~------c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|+.|+|++| .+..+|..+..+++|+.|++++ |.....+|..+.++++|++|++++|.
T Consensus 515 L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 515 LVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 999999997 4556888888899999999954 44566788888899999999999887
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.2e-24 Score=234.64 Aligned_cols=299 Identities=16% Similarity=0.166 Sum_probs=228.2
Q ss_pred CceeEEEEEcCCCcccccC-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEe
Q 045113 469 NVKRFFALEQQSDFAYLDD-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLK 547 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~~~~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~ 547 (821)
..++++.+.++........ .+++|++|.+.++.... ... +..+++|++|++++|.++.+| .+.++++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~----~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD----ISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCcccc----chh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 4577788877766555445 78899999998887653 222 788899999999999888775 588899999999
Q ss_pred ecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC-Ccch
Q 045113 548 LNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP-CCCT 626 (821)
Q Consensus 548 L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~ 626 (821)
+++|.+..+|. +. .+++|++|++++|.....+..+..+++|++|++++|.+... +. ++.+++|++|++..+ -...
T Consensus 117 l~~n~i~~~~~-~~-~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 117 LNEDNISDISP-LA-NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp CTTSCCCCCGG-GT-TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCC
T ss_pred CcCCcccCchh-hc-cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccc
Confidence 99998888876 66 88999999999884333344488899999999998887443 33 788888999988884 2334
Q ss_pred hhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcc
Q 045113 627 KDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMP 706 (821)
Q Consensus 627 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~ 706 (821)
.. +..+++|+.|+++++.... ++. +..+++|+.|+++++ .+..+.. +..+++|+.|++++|.+.. .+
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~---~~~-~~~~~~L~~L~l~~n----~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~ 259 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITD---ITP-VANMTRLNSLKIGNN----KITDLSP--LANLSQLTWLEIGTNQISD--IN 259 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCC---CGG-GGGCTTCCEEECCSS----CCCCCGG--GTTCTTCCEEECCSSCCCC--CG
T ss_pred cc-ccCCCccceeecccCCCCC---Cch-hhcCCcCCEEEccCC----ccCCCcc--hhcCCCCCEEECCCCccCC--Ch
Confidence 44 7788889999988874211 111 677888999998865 3443322 6688999999999998765 36
Q ss_pred cccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCC
Q 045113 707 ALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKS 786 (821)
Q Consensus 707 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~ 786 (821)
.+..+++|+.|++++|.+.+.. ....+++|+.|++++|......+..++.+++|+.|++++|+. ..++. +..+++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~-~~~l~~ 334 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRP-LASLSK 334 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCCGG-GGGCTT
T ss_pred hHhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-ccccC-hhhhhc
Confidence 7889999999999988877642 356789999999999864444455677899999999999984 44544 788999
Q ss_pred CCEEEEeCCc
Q 045113 787 LNNFNCWWPQ 796 (821)
Q Consensus 787 L~~L~l~~c~ 796 (821)
|++|++++|+
T Consensus 335 L~~L~l~~N~ 344 (347)
T 4fmz_A 335 MDSADFANQV 344 (347)
T ss_dssp CSEESSSCC-
T ss_pred cceeehhhhc
Confidence 9999999987
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=8.8e-25 Score=261.64 Aligned_cols=314 Identities=14% Similarity=0.111 Sum_probs=217.5
Q ss_pred CceeEEEEEcCCCc-cccc-C-CCCCceEEEeecCC-CCccchhhhHHh-------hccCCceeEEEeCCCCCCcccc--
Q 045113 469 NVKRFFALEQQSDF-AYLD-D-YYPHLHSLLYFTSE-SDHLDHIDWQKI-------CEMYKLLRVLDLGSLVLNQYPS-- 535 (821)
Q Consensus 469 ~~~r~lsl~~~~~~-~~~~-~-~~~~LrsL~l~~~~-~~~~~~~~~~~~-------~~~~~~Lr~L~L~~~~l~~lp~-- 535 (821)
...+.|.+..+... ..+. . .+++|+.|.+.++. .. ....+.. +..+++|+.|+|++|.++.+|.
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 45677777665432 2222 2 67777777777765 32 1012222 2344578888888888777777
Q ss_pred cccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCcc-CceeecCCcccCCCCCCCcCCCCC-
Q 045113 536 EIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKK-LRHLNFGSITLPAHPGNYCGSLEN- 613 (821)
Q Consensus 536 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~-L~~L~L~~~~~~~~~p~~i~~l~~- 613 (821)
.++++++|++|+|++|.+..+| .+. .+++|+.|++++|.+..+|..+.++++ |++|++++|.+. .+|..++.++.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~-~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFG-TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCC-TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcccch-hhc-CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 7788888888888888777777 666 788888888888877777777888887 888888888775 67776666654
Q ss_pred -cceeccccCC--cchhh---hcC--CCCCCCeEEEecccccchhHHHHHc-cCCCCcCEEEeecCC---------CC--
Q 045113 614 -LNFISALYPC--CCTKD---LLG--RLPNLRNLRIQGDLSYNQSLLSKSL-CRLSCLESLKLANES---------KM-- 673 (821)
Q Consensus 614 -L~~L~~~~~~--~~~~~---~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~l~~~~---------~~-- 673 (821)
|+.|++..|. ..++. .++ .+++|+.|++++|. ...+|..+ ..+++|+.|+++.|. ..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE---IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC---CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc---CCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 8888877741 11111 022 34578899998883 22455554 478999999999852 11
Q ss_pred ------CCCCeeEecc---------cC--CCCCcceEEEecccCCCCCcccccCCCCCCEEEEec------cccCCCeee
Q 045113 674 ------PRLSKIILAE---------YV--FPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQ------NSYSGRKLT 730 (821)
Q Consensus 674 ------~~L~~l~l~~---------~~--~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~------~~~~~~~~~ 730 (821)
++|+.|.+++ +. .+++|+.|+|++|.+++ +|..++.+++|+.|+|++ |.+.+. ++
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip 799 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WP 799 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CC
T ss_pred ccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc-Ch
Confidence 1788998877 33 78999999999999886 788899999999999986 444443 34
Q ss_pred ecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCcccc--------CCCCCCCEEEEeCCc
Q 045113 731 CGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQL--------WCIKSLNNFNCWWPQ 796 (821)
Q Consensus 731 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l--------~~l~~L~~L~l~~c~ 796 (821)
.....+++|+.|+|++|. +..+|..+. ++|+.|+|++|+...--+..+ ..+..-+..++.+||
T Consensus 800 ~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp TTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred HHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 446779999999999985 588887644 799999999998654222211 122222344677888
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=5.2e-24 Score=249.97 Aligned_cols=272 Identities=18% Similarity=0.139 Sum_probs=169.2
Q ss_pred ceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccc-hhhhccCccCceeecC
Q 045113 519 LLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHT-ADEFWKMKKLRHLNFG 596 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~ 596 (821)
.|+.|++++|.++.++. .++++++|++|++++|.+..+|..+. .+++|++|++++|.+..+ |..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 45556666666554443 36677777777777777777777776 777777777777776666 4467777777777777
Q ss_pred CcccCCCCCCC-cCCCCCcceeccccCC--cc---hhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecC
Q 045113 597 SITLPAHPGNY-CGSLENLNFISALYPC--CC---TKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANE 670 (821)
Q Consensus 597 ~~~~~~~~p~~-i~~l~~L~~L~~~~~~--~~---~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 670 (821)
+|.+.+.+|.. ++.+++|++|++..+. .. +.. +..+++|+.|+++++. .....+..+..+++|+.|+++.|
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCC
Confidence 77766555544 6777777777777631 11 334 6777777777777762 33334556667777777777763
Q ss_pred C-----------CCCCCCeeEecc----------cCCCCCcceEEEecccCCCC---CcccccCCCCCCEEEEeccccCC
Q 045113 671 S-----------KMPRLSKIILAE----------YVFPHSLTHLSFSNTDLMDD---PMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 671 ~-----------~~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
. .+++|+.|.+++ +..+++|+.|++++|.+.+. .+..++.+++|+.|+|++|.+.+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 1 234555555544 34455666666666655431 12345566666666666555443
Q ss_pred CeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 727 RKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 727 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.. +..+..+++|+.|++++|......+..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 491 ~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 ID-QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EC-TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cC-hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 21 2234556666666666664333334455666666 67777666554445556777788888887755
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.5e-24 Score=232.25 Aligned_cols=280 Identities=17% Similarity=0.181 Sum_probs=232.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.+++|++|.+.++.... . ..+..+++|++|++++|.++.+|. +.++++|++|++++|.+..+| .+. .+++|
T Consensus 42 ~l~~L~~L~l~~~~i~~-----~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~-~l~~L 112 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-----I-QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ-NLTNL 112 (347)
T ss_dssp HHTTCSEEECCSSCCCC-----C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT-TCTTC
T ss_pred hcccccEEEEeCCcccc-----c-hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHc-CCCcC
Confidence 78899999999987753 2 237889999999999999998887 999999999999999999887 577 99999
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEecccc
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQGDLS 646 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 646 (821)
++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++..+ -..... +..+++|+.|++++|.-
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 999999999999887 89999999999999976555554 899999999999884 333444 78899999999999842
Q ss_pred cchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 647 YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 647 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
..++. +..+++|+.|+++.+ .+..... +..+++|+.|++++|.++...+ +..+++|+.|++++|.+.+
T Consensus 190 ---~~~~~-~~~l~~L~~L~l~~n----~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 190 ---EDISP-LASLTSLHYFTAYVN----QITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp ---CCCGG-GGGCTTCCEEECCSS----CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ---ccccc-ccCCCccceeecccC----CCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 22222 778899999999864 3333322 5678999999999999865433 8999999999999888776
Q ss_pred CeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 727 RKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 727 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
. .....+++|++|++++| .+..++ .+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 258 ~---~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 258 I---NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp C---GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred C---hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 3 23678999999999998 566664 47789999999999998666667788999999999999998
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=240.33 Aligned_cols=313 Identities=16% Similarity=0.115 Sum_probs=205.6
Q ss_pred CCceeEEEEEcCCCccccc-C--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCce
Q 045113 468 KNVKRFFALEQQSDFAYLD-D--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLR 544 (821)
Q Consensus 468 ~~~~r~lsl~~~~~~~~~~-~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 544 (821)
+..++++.+..+....... . .+++|++|.+.++.... ..+..|..+++|++|+|++|.++.+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 4678899998887655432 2 88999999999887753 5567889999999999999999988876 899999
Q ss_pred EEeecCCCCcc--ccHHHHhccccceEEecCCcccccchhhhccCccC--ceeecCCccc--CCCCCCCcCC--------
Q 045113 545 YLKLNIPSLKS--LPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKL--RHLNFGSITL--PAHPGNYCGS-------- 610 (821)
Q Consensus 545 ~L~L~~~~i~~--lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~L~~~~~--~~~~p~~i~~-------- 610 (821)
+|++++|.+.. +|..++ ++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..++.
T Consensus 94 ~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp EEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred EEeccCCccccccchhhhc-cCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 99999999885 678888 99999999999997765 356677777 8888888777 4555544444
Q ss_pred ------------------CCCcceeccccC--------------------------------------------------
Q 045113 611 ------------------LENLNFISALYP-------------------------------------------------- 622 (821)
Q Consensus 611 ------------------l~~L~~L~~~~~-------------------------------------------------- 622 (821)
+++|+.|++..+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 334444433321
Q ss_pred ----------Ccchhhhc-----CCCCCCCeEEEecccccch-hHHHHH---------------------ccCCCCcCEE
Q 045113 623 ----------CCCTKDLL-----GRLPNLRNLRIQGDLSYNQ-SLLSKS---------------------LCRLSCLESL 665 (821)
Q Consensus 623 ----------~~~~~~~l-----~~l~~L~~L~l~~~~~~~~-~~l~~~---------------------l~~~~~L~~L 665 (821)
+..+.. + +++++|+.++++++..... ..+... ...+++|+.|
T Consensus 251 ~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L 329 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred EEEeecccccCccccc-hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEE
Confidence 112222 2 3333333333333210000 011111 0344555555
Q ss_pred EeecCC----------CCCCCCeeEecc------------cCCCCCcceEEEecccCCCCCcc-cccCCCCCCEEEEecc
Q 045113 666 KLANES----------KMPRLSKIILAE------------YVFPHSLTHLSFSNTDLMDDPMP-ALEKLPLLQVLKLKQN 722 (821)
Q Consensus 666 ~l~~~~----------~~~~L~~l~l~~------------~~~~~~L~~L~L~~~~l~~~~~~-~l~~l~~L~~L~L~~~ 722 (821)
++++|. ..++|+.|.+++ +..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 555421 233444444443 34556666666666665543333 3556666666666666
Q ss_pred ccCCCeeeecCCCC-cccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccc-cCCCCCCCEEEEeCCc
Q 045113 723 SYSGRKLTCGSDGF-PRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQ-LWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 723 ~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 796 (821)
.+.+..+ ..+ ++|+.|++++| .+..+|.....+++|+.|++++|. ++.+|.. +.++++|++|+++++|
T Consensus 410 ~l~~~~~----~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 410 ILTDTIF----RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCGGGG----GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcchh----hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 5544321 122 68888888887 577888777799999999999996 5678876 8899999999999865
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.9e-23 Score=235.26 Aligned_cols=303 Identities=17% Similarity=0.169 Sum_probs=183.3
Q ss_pred CceeEEEEEcCCCcccccC-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEe
Q 045113 469 NVKRFFALEQQSDFAYLDD-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLK 547 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~~~~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~ 547 (821)
..++.+.+........+.. .+++|++|.+.++.... .++ +..+++|++|++++|.+..++. ++++++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 3466666666555444344 67777777777776542 222 6777777777777777776665 77777777777
Q ss_pred ecCCCCccccHHHHhccccceEEecCCcccccchh--------------------hhccCccCceeecCCcccCCCCCCC
Q 045113 548 LNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTAD--------------------EFWKMKKLRHLNFGSITLPAHPGNY 607 (821)
Q Consensus 548 L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--------------------~i~~l~~L~~L~L~~~~~~~~~p~~ 607 (821)
+++|.+..+|. +. ++++|++|++++|.+..+|. .+.++++|++|++++|.+.. ++ .
T Consensus 119 L~~n~l~~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~ 194 (466)
T 1o6v_A 119 LFNNQITDIDP-LK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-V 194 (466)
T ss_dssp CCSSCCCCCGG-GT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-G
T ss_pred CCCCCCCCChH-Hc-CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-h
Confidence 77777777664 55 77777777777776665543 13445555555555555422 22 2
Q ss_pred cCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC--------CCCCCCe
Q 045113 608 CGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES--------KMPRLSK 678 (821)
Q Consensus 608 i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~--------~~~~L~~ 678 (821)
+..+++|++|++..+. ..... ++.+++|+.|+++++.-. .+ ..+..+++|+.|++++|. .+++|+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~---~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK---DI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC---CC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc---cc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCE
Confidence 4555555555555531 11222 445566666666655311 11 234556666666666531 3455666
Q ss_pred eEecc--------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCc
Q 045113 679 IILAE--------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWL 750 (821)
Q Consensus 679 l~l~~--------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 750 (821)
|.+++ +..+++|+.|++++|.+.+. +.++.+++|+.|++++|.+.+... ...+++|+.|++++| .+
T Consensus 270 L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-~l 343 (466)
T 1o6v_A 270 LKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-KV 343 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-CC
T ss_pred EECCCCccCccccccCCCccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-cc
Confidence 66554 44566666677766665442 226667777777777666655432 356677777777776 34
Q ss_pred cceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 751 EEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 751 ~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
..++ .+..+++|+.|++++|......| +..+++|+.|++++|+
T Consensus 344 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 344 SDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 4443 45677778888887776443333 6777888888887776
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.2e-23 Score=238.49 Aligned_cols=283 Identities=19% Similarity=0.180 Sum_probs=184.0
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.++++++|.+.++.... . + .+..+++|++|+|++|.++.+|. ++++++|++|++++|.+..++. +. ++++|
T Consensus 44 ~l~~l~~L~l~~~~i~~----l-~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~-~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS----I-D-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA-NLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCCCC----C-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT-TCTTC
T ss_pred HhccccEEecCCCCCcc----C-c-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hc-CCCCC
Confidence 57889999999887653 2 2 37889999999999999998887 9999999999999999998887 77 99999
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEeccccc
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSY 647 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 647 (821)
++|++++|.+..+|. +.++++|++|++++|.+.. ++ .++.+++|+.|++..+-..... +.++++|+.|+++++.-.
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVS 190 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCC
Confidence 999999999999876 8999999999999998854 43 3666666666665432222233 555666666666655311
Q ss_pred chhHHHHHccCCCCcCEEEeecCC------------------------------CCCCCCeeEecc--------cCCCCC
Q 045113 648 NQSLLSKSLCRLSCLESLKLANES------------------------------KMPRLSKIILAE--------YVFPHS 689 (821)
Q Consensus 648 ~~~~l~~~l~~~~~L~~L~l~~~~------------------------------~~~~L~~l~l~~--------~~~~~~ 689 (821)
.+ ..+..+++|++|+++++. .+++|+.|.+++ +..+++
T Consensus 191 ---~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 191 ---DI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp ---CC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred ---CC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 11 123444555555554421 233444444433 334445
Q ss_pred cceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEe
Q 045113 690 LTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIIN 769 (821)
Q Consensus 690 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~ 769 (821)
|+.|++++|.+.+.. .+..+++|+.|++++|.+.+... ...+++|+.|++++|. +..++. +..+++|+.|+++
T Consensus 267 L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 267 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECC
T ss_pred CCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECC
Confidence 555555555443321 14455555555555554444221 3455666666666653 333322 4566777777777
Q ss_pred ecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 770 PCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 770 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
+|. +..++ .+.++++|+.|++++|+
T Consensus 340 ~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 664 34443 56677777777777775
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=6.5e-24 Score=246.05 Aligned_cols=321 Identities=18% Similarity=0.124 Sum_probs=221.2
Q ss_pred CCceeEEEEEcCCCcccc-c-C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccccc-ccCCCCc
Q 045113 468 KNVKRFFALEQQSDFAYL-D-D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSE-IENLSLL 543 (821)
Q Consensus 468 ~~~~r~lsl~~~~~~~~~-~-~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~l~~L 543 (821)
+..++++.+..+...... . . .+++|++|.+.++.... ..+..|..+++|++|+|++|.++.+|.. ++++++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 467899999988765432 2 2 89999999999987753 5557789999999999999999977754 9999999
Q ss_pred eEEeecCCCCcc--ccHHHHhccccceEEecCCcc-cccch-hhhccCccCceeecCCcccCCCCCCCcCCCCCcceecc
Q 045113 544 RYLKLNIPSLKS--LPLSFFNYLLNLYTLDMPFSY-IDHTA-DEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISA 619 (821)
Q Consensus 544 r~L~L~~~~i~~--lp~~i~~~L~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~ 619 (821)
++|++++|.+.. .|..+. ++++|++|++++|. +..+| ..+.++++|++|++++|.+.+..|..++.+++|++|++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred cEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999999999884 466787 99999999999996 77786 57899999999999999998878888888777777766
Q ss_pred ccC--CcchhhhcCCCCCCCeEEEeccccc-------------------------c------------------------
Q 045113 620 LYP--CCCTKDLLGRLPNLRNLRIQGDLSY-------------------------N------------------------ 648 (821)
Q Consensus 620 ~~~--~~~~~~~l~~l~~L~~L~l~~~~~~-------------------------~------------------------ 648 (821)
..+ ...+...+..+++|+.|+++++.-. .
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 552 1222221223344444444333100 0
Q ss_pred --------------------------------------------------------------hhHHHHHc-cCCCCcCEE
Q 045113 649 --------------------------------------------------------------QSLLSKSL-CRLSCLESL 665 (821)
Q Consensus 649 --------------------------------------------------------------~~~l~~~l-~~~~~L~~L 665 (821)
...+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 00012222 235566666
Q ss_pred EeecCC-------------CCCCCCeeEecc------------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEe
Q 045113 666 KLANES-------------KMPRLSKIILAE------------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLK 720 (821)
Q Consensus 666 ~l~~~~-------------~~~~L~~l~l~~------------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 720 (821)
+++.|. ..++|+.|.+++ +..+++|+.|++++|.++ ..|..++.+++|++|+++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECC
Confidence 665531 234566666544 345667777777777665 455566666777777776
Q ss_pred ccccCCCee----------------eecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCC
Q 045113 721 QNSYSGRKL----------------TCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCI 784 (821)
Q Consensus 721 ~~~~~~~~~----------------~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l 784 (821)
+|.+..... ......+++|++|+|++| .+..+|. ...+++|+.|++++|......|..+..+
T Consensus 419 ~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 419 STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp TSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred CCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 665432110 001135778888888887 5667765 4578999999999986554445568999
Q ss_pred CCCCEEEEeCCc
Q 045113 785 KSLNNFNCWWPQ 796 (821)
Q Consensus 785 ~~L~~L~l~~c~ 796 (821)
++|+.|++++||
T Consensus 497 ~~L~~L~l~~N~ 508 (549)
T 2z81_A 497 TSLQKIWLHTNP 508 (549)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEEecCCC
Confidence 999999998876
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=6.2e-24 Score=249.33 Aligned_cols=324 Identities=17% Similarity=0.085 Sum_probs=207.6
Q ss_pred CCCceeEEEEEcCCCccccc-C--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAYLD-D--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~-~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~ 542 (821)
.+..++++.+..+....... . .+++|++|.+.++.... ..+..|..+++|++|+|++|.+..+ |..++++++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 45678899988877655432 2 88999999998887643 5567788999999999999998754 678889999
Q ss_pred ceEEeecCCCCccc-cHHHHhccccceEEecCCcccccch-hhhccCccCceeecCCcccCCCCCCCcCCCCCcc--eec
Q 045113 543 LRYLKLNIPSLKSL-PLSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLN--FIS 618 (821)
Q Consensus 543 Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~--~L~ 618 (821)
|++|++++|.+..+ |..+. ++++|++|++++|.+..++ +.+..+++|++|++++|.+....|..++.+++|+ +|+
T Consensus 107 L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred ccEeeccccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 99999999998876 45666 8999999999999887762 3445588999999999888666666678888888 666
Q ss_pred cccC--CcchhhhcCCCCCCCeEEEecccc--------------------------------------------------
Q 045113 619 ALYP--CCCTKDLLGRLPNLRNLRIQGDLS-------------------------------------------------- 646 (821)
Q Consensus 619 ~~~~--~~~~~~~l~~l~~L~~L~l~~~~~-------------------------------------------------- 646 (821)
+..+ ...+.. .....+|+.|++.++..
T Consensus 186 l~~n~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 186 LNGNDIAGIEPG-AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp CTTCCCCEECTT-TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred cCCCccCccChh-HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 6663 222222 22223344444433210
Q ss_pred cchhHHHHHccCCCCcCEEEeecCC---------CCCCCCeeEecc----------cCCCCCcceEEEecccCCCCCcc-
Q 045113 647 YNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKIILAE----------YVFPHSLTHLSFSNTDLMDDPMP- 706 (821)
Q Consensus 647 ~~~~~l~~~l~~~~~L~~L~l~~~~---------~~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~~~~~- 706 (821)
......+..+..+++|+.|+++++. .+++|+.|.+.+ +..+++|+.|++++|.+.+..+.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 1111112235566677777776631 234455555544 34456666666666655433332
Q ss_pred cccCCCCCCEEEEeccccCCCee-eecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCcc-ccCCC
Q 045113 707 ALEKLPLLQVLKLKQNSYSGRKL-TCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPE-QLWCI 784 (821)
Q Consensus 707 ~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~-~l~~l 784 (821)
.++.+++|+.|++++|.+.+... ......+++|++|++++|......+..+..+++|+.|++++|......|. .+.++
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 35566666666666555544221 22345566777777776632222244456677777777777665444333 36677
Q ss_pred CCCCEEEEeCCc
Q 045113 785 KSLNNFNCWWPQ 796 (821)
Q Consensus 785 ~~L~~L~l~~c~ 796 (821)
++|++|++++|.
T Consensus 425 ~~L~~L~l~~n~ 436 (606)
T 3t6q_A 425 HLLKVLNLSHSL 436 (606)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEECCCCc
Confidence 777777777765
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=242.69 Aligned_cols=313 Identities=19% Similarity=0.180 Sum_probs=206.7
Q ss_pred eEEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecC
Q 045113 472 RFFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNI 550 (821)
Q Consensus 472 r~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~ 550 (821)
+++.+.++.....+..-.++|+.|.+.++.... .++..|..+++|++|+|++|.++.+ |..++++++|++|+|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 345555555554433334899999999998754 5667899999999999999999966 77899999999999999
Q ss_pred CCCccccHHHHhccccceEEecCCccccc--chhhhccCccCceeecCCcccCCCCCCCcCCCCCc--ceeccccCC---
Q 045113 551 PSLKSLPLSFFNYLLNLYTLDMPFSYIDH--TADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENL--NFISALYPC--- 623 (821)
Q Consensus 551 ~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L--~~L~~~~~~--- 623 (821)
|.+..+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.+ ..++.+++| ++|++..+.
T Consensus 79 N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 999999976 69999999999998876 57899999999999999999865 346667777 888876631
Q ss_pred --cchhh-------------------------hcCCCCCCCeEEEeccc-----ccchhHHHHHccCCC-----------
Q 045113 624 --CCTKD-------------------------LLGRLPNLRNLRIQGDL-----SYNQSLLSKSLCRLS----------- 660 (821)
Q Consensus 624 --~~~~~-------------------------~l~~l~~L~~L~l~~~~-----~~~~~~l~~~l~~~~----------- 660 (821)
..+.. .+.++++|+.|+++++. ....+.++ .+..++
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 11222 01224444444444431 00111111 222222
Q ss_pred ----------------CcCEEEeec-----------------------------CC---C---------CCCCCeeEecc
Q 045113 661 ----------------CLESLKLAN-----------------------------ES---K---------MPRLSKIILAE 683 (821)
Q Consensus 661 ----------------~L~~L~l~~-----------------------------~~---~---------~~~L~~l~l~~ 683 (821)
+|+.|+++. +. + ..+++.|.+++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence 333333332 10 0 02345555544
Q ss_pred --------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCC-eeeecCCCCcccceeeeccCCCcccee
Q 045113 684 --------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGR-KLTCGSDGFPRLKVLHLKSMLWLEEWT 754 (821)
Q Consensus 684 --------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~~~ 754 (821)
...+++|++|++++|.+++..+..++.+++|+.|++++|.+.+. .++.....+++|++|++++|.....++
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 15678888888888888777777888888888888887777642 122234567777777777764322244
Q ss_pred ec-cccc----------------------cccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 755 MG-TGAM----------------------PKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 755 ~~-~~~l----------------------~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.. +..+ ++|+.|++++|. ++.+|..+..+++|++|++++|.
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 32 2333 456666666553 34666666677777777777765
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=8.8e-24 Score=248.04 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=116.1
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccc-cHHHHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSL-PLSFFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~ 565 (821)
-.+++++|.+.++.... ..+..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.+..+ |..+. +++
T Consensus 30 ~~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLT 104 (606)
T ss_dssp SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCT
T ss_pred CCCCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC-Ccc
Confidence 45889999999988753 5566899999999999999999966 56799999999999999999977 77788 999
Q ss_pred cceEEecCCcccccch-hhhccCccCceeecCCcccCC-CCCCCcCCCCCcceeccccC
Q 045113 566 NLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSITLPA-HPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 566 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~-~~p~~i~~l~~L~~L~~~~~ 622 (821)
+|++|++++|.+..+| ..++++++|++|++++|.+.+ .+|..++++++|++|++..+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 9999999999998886 679999999999999999965 67999999999999998874
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.7e-23 Score=243.14 Aligned_cols=311 Identities=17% Similarity=0.137 Sum_probs=196.3
Q ss_pred CCceeEEEEEcCCCccccc--C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCce
Q 045113 468 KNVKRFFALEQQSDFAYLD--D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLR 544 (821)
Q Consensus 468 ~~~~r~lsl~~~~~~~~~~--~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 544 (821)
+..++++.+..+....... . .+++|++|.+.++.... ..+..|..+++|++|+|++|.++.+|.. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 4567777777776554432 2 77788888887776643 4456677788888888888888777765 678888
Q ss_pred EEeecCCCCcccc--HHHHhccccceEEecCCcccccchhhhccCccC--ceeecCCccc--CCCCCCCcCCC-------
Q 045113 545 YLKLNIPSLKSLP--LSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKL--RHLNFGSITL--PAHPGNYCGSL------- 611 (821)
Q Consensus 545 ~L~L~~~~i~~lp--~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~L~~~~~--~~~~p~~i~~l------- 611 (821)
+|++++|.+..+| ..+. ++++|++|++++|.+... .+..+++| ++|++++|.+ .+..|..+..+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EEECCCCCccccCchHhhc-ccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 8888888877544 6677 788888888888766542 34444454 7777776665 44334333322
Q ss_pred -------------------CCcceeccccCC-------cchhhhcCC---------------------------CCCCCe
Q 045113 612 -------------------ENLNFISALYPC-------CCTKDLLGR---------------------------LPNLRN 638 (821)
Q Consensus 612 -------------------~~L~~L~~~~~~-------~~~~~~l~~---------------------------l~~L~~ 638 (821)
++|+.|++..+. ..+.. +.. .++|+.
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-HhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 222222222110 00000 000 012222
Q ss_pred EEEecccccchhHHH-------------------------------HHc----------------------cCCCCcCEE
Q 045113 639 LRIQGDLSYNQSLLS-------------------------------KSL----------------------CRLSCLESL 665 (821)
Q Consensus 639 L~l~~~~~~~~~~l~-------------------------------~~l----------------------~~~~~L~~L 665 (821)
|+++++. ..+.+| ..+ ..+++|+.|
T Consensus 281 L~l~~n~--l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 281 LNIYNLT--ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEE--ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred EEEeccE--eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 2222221 000000 000 345566666
Q ss_pred EeecCC----------CCCCCCeeEecc------------cCCCCCcceEEEecccCCCCCc-ccccCCCCCCEEEEecc
Q 045113 666 KLANES----------KMPRLSKIILAE------------YVFPHSLTHLSFSNTDLMDDPM-PALEKLPLLQVLKLKQN 722 (821)
Q Consensus 666 ~l~~~~----------~~~~L~~l~l~~------------~~~~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~L~~~ 722 (821)
+++.|. ..++|+.|.+++ +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 665531 234455555543 4567888888888888776344 34778888888888888
Q ss_pred ccCCCeeeecCCCC-cccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccc-cCCCCCCCEEEEeCCc
Q 045113 723 SYSGRKLTCGSDGF-PRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQ-LWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 723 ~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 796 (821)
.+.+..+ ..+ ++|+.|++++| .+..+|.....+++|+.|++++|. ++.+|.. +..+++|+.|+++++|
T Consensus 439 ~l~~~~~----~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 439 MLTGSVF----RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCGGGG----SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCcchh----hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 7765432 234 69999999998 688888877899999999999986 5578887 8999999999999865
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.9e-23 Score=236.22 Aligned_cols=301 Identities=15% Similarity=0.120 Sum_probs=240.4
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC-cc-cccccCCCCceEEeecCCCCccc-cHHHHhcc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN-QY-PSEIENLSLLRYLKLNIPSLKSL-PLSFFNYL 564 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L 564 (821)
-.++|++|.+.++.... ..+..|..+++|++|+|++|.+. .+ |..+.++++|++|+|++|.+..+ |..+. ++
T Consensus 28 l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l 102 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-GL 102 (455)
T ss_dssp CCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT-TC
T ss_pred CCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc-Cc
Confidence 34789999999988753 55677899999999999999986 55 56799999999999999999865 67788 99
Q ss_pred ccceEEecCCccccc-chhh--hccCccCceeecCCcccCCCCCCC-cCCCCCcceeccccC---CcchhhhcCCC--CC
Q 045113 565 LNLYTLDMPFSYIDH-TADE--FWKMKKLRHLNFGSITLPAHPGNY-CGSLENLNFISALYP---CCCTKDLLGRL--PN 635 (821)
Q Consensus 565 ~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~L~~~~~~~~~p~~-i~~l~~L~~L~~~~~---~~~~~~~l~~l--~~ 635 (821)
++|++|++++|.+.. +|.. +.++++|++|++++|.+.+..|.. ++.+++|++|++..| +..+.. +..+ .+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~ 181 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKH 181 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhcccccc
Confidence 999999999998876 3554 889999999999999997776765 899999999999884 233333 5544 67
Q ss_pred CCeEEEecccccc------hhHHHHHccCCCCcCEEEeecCC-------------CCCCCCeeEecccC-----------
Q 045113 636 LRNLRIQGDLSYN------QSLLSKSLCRLSCLESLKLANES-------------KMPRLSKIILAEYV----------- 685 (821)
Q Consensus 636 L~~L~l~~~~~~~------~~~l~~~l~~~~~L~~L~l~~~~-------------~~~~L~~l~l~~~~----------- 685 (821)
|+.|+++++.... .......+..+++|+.|++++|. ...+++.+.+.+..
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 8899988874111 11122234566899999999852 23678888876510
Q ss_pred -----------CCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce-
Q 045113 686 -----------FPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW- 753 (821)
Q Consensus 686 -----------~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~- 753 (821)
.+++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+.. +..+..+++|++|++++| .+..+
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~ 339 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQN-FLGSID 339 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEEC
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCC-ccCCcC
Confidence 2368999999999998888888999999999999988876532 334678899999999998 45655
Q ss_pred eeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 754 TMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 754 ~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
+..++.+++|+.|++++|......|..+.++++|++|++++|.
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 5567889999999999997655557889999999999999986
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=3.6e-23 Score=228.92 Aligned_cols=269 Identities=16% Similarity=0.141 Sum_probs=225.5
Q ss_pred cCCceeEEEeCCCCCCccccc-ccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccch-hhhccCccCce
Q 045113 516 MYKLLRVLDLGSLVLNQYPSE-IENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRH 592 (821)
Q Consensus 516 ~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~ 592 (821)
.++++++|+++++.++.+|.. +..+++|++|++++|.+..+|. .+. .+++|++|++++|.+..+| ..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 468999999999999999875 6889999999999999998775 677 9999999999999998885 45899999999
Q ss_pred eecCCcccCCCCCCC-cCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeec
Q 045113 593 LNFGSITLPAHPGNY-CGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLAN 669 (821)
Q Consensus 593 L~L~~~~~~~~~p~~-i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 669 (821)
|++++|.+. .+|.. ++.+++|++|++..+ ...+...+..+++|+.|+++++.- .. + .+..+++|+.|+++.
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~-~--~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL--TH-V--DLSLIPSLFHANVSY 195 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC--SB-C--CGGGCTTCSEEECCS
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC--Cc-c--ccccccccceeeccc
Confidence 999999995 56655 699999999999985 333333388999999999999842 11 1 356788999999998
Q ss_pred CC-----CCCCCCeeEecc-------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCc
Q 045113 670 ES-----KMPRLSKIILAE-------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFP 737 (821)
Q Consensus 670 ~~-----~~~~L~~l~l~~-------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 737 (821)
|. .+++|+.+.+.+ ...+++|+.|++++|.+++ ++.++.+++|+.|+|++|.+.+. .+..+..++
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~ 272 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQ 272 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCS
T ss_pred ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCc-ChhHccccc
Confidence 53 456788888776 3346799999999999865 47899999999999998887663 344567899
Q ss_pred ccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 738 RLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 738 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
+|++|++++| .+..++.....+|+|+.|++++|. +..+|..+..+++|++|++++|+
T Consensus 273 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 273 RLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred cCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 9999999997 678888778889999999999995 66888888899999999999987
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=2.2e-23 Score=242.17 Aligned_cols=314 Identities=17% Similarity=0.149 Sum_probs=216.8
Q ss_pred eEEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecC
Q 045113 472 RFFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNI 550 (821)
Q Consensus 472 r~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~ 550 (821)
+++.+.++.....+..-.+++++|.+.++.... .++..|..+++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 667776666555433345899999999998764 5567889999999999999999966 67899999999999999
Q ss_pred CCCccccHHHHhccccceEEecCCcccccch--hhhccCccCceeecCCcccCCCCCCCcCCCCCc--ceeccccCCc--
Q 045113 551 PSLKSLPLSFFNYLLNLYTLDMPFSYIDHTA--DEFWKMKKLRHLNFGSITLPAHPGNYCGSLENL--NFISALYPCC-- 624 (821)
Q Consensus 551 ~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L--~~L~~~~~~~-- 624 (821)
|.+..+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+... .+..+++| ++|++..+..
T Consensus 110 N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 999999976 6999999999999988764 7899999999999999998653 34455555 8888766311
Q ss_pred ---chhh-------------------------hcCCCCCCCeEEEecccc--cchhHHHHHccC----------------
Q 045113 625 ---CTKD-------------------------LLGRLPNLRNLRIQGDLS--YNQSLLSKSLCR---------------- 658 (821)
Q Consensus 625 ---~~~~-------------------------~l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~---------------- 658 (821)
.+.. .+..+++|+.|+++++.. .........+..
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 1111 133566788888877520 001111112222
Q ss_pred -----------CCCcCEEEeecCC-----CC-------CC-----------------------------CCeeEecc---
Q 045113 659 -----------LSCLESLKLANES-----KM-------PR-----------------------------LSKIILAE--- 683 (821)
Q Consensus 659 -----------~~~L~~L~l~~~~-----~~-------~~-----------------------------L~~l~l~~--- 683 (821)
..+|+.|+++.+. +. ++ ++.|.+.+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 2366666666521 11 22 34444433
Q ss_pred -----cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCe-eeecCCCCcccceeeeccCCCccceeec-
Q 045113 684 -----YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRK-LTCGSDGFPRLKVLHLKSMLWLEEWTMG- 756 (821)
Q Consensus 684 -----~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~~~~~- 756 (821)
...+++|+.|++++|.+++..+..++++++|+.|++++|.+.+.. .+..+..+++|++|++++|.....++..
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 156788889999988888777788888888888888877776521 2233566777777777776432223322
Q ss_pred cccc----------------------cccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 757 TGAM----------------------PKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 757 ~~~l----------------------~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
+..+ ++|+.|++++| .++.+|..+.++++|++|+++++.
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 2222 46777777766 355677777788888888888776
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.9e-23 Score=225.05 Aligned_cols=232 Identities=22% Similarity=0.193 Sum_probs=192.1
Q ss_pred cCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeec
Q 045113 516 MYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNF 595 (821)
Q Consensus 516 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L 595 (821)
..+.++.|+|+++.++.+|..++++++|++|+|++|.+..+|..++ ++++|++|++++|.+..+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ-QFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGG-GGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHh-ccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 4588999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCC
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 675 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 675 (821)
++|.+.+.+|..++... .... +..+++|+.|++++|. ...+|..
T Consensus 158 ~~n~~~~~~p~~~~~~~------------~~~~-~~~l~~L~~L~L~~n~---l~~lp~~-------------------- 201 (328)
T 4fcg_A 158 RACPELTELPEPLASTD------------ASGE-HQGLVNLQSLRLEWTG---IRSLPAS-------------------- 201 (328)
T ss_dssp EEETTCCCCCSCSEEEC-------------CCC-EEESTTCCEEEEEEEC---CCCCCGG--------------------
T ss_pred CCCCCccccChhHhhcc------------chhh-hccCCCCCEEECcCCC---cCcchHh--------------------
Confidence 99988888887654311 0111 5567778888887762 1122222
Q ss_pred CCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceee
Q 045113 676 LSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM 755 (821)
Q Consensus 676 L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 755 (821)
+..+++|+.|+|++|.++ ..++.++.+++|+.|+|++|.+.+.. +..+..+++|++|+|++|.....+|.
T Consensus 202 --------l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 202 --------IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp --------GGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred --------hcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcch
Confidence 345567777777788776 45667889999999999988877654 44577899999999999988888888
Q ss_pred ccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeC
Q 045113 756 GTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWW 794 (821)
Q Consensus 756 ~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~ 794 (821)
.++.+++|+.|++++|+.++.+|..+.++++|+.+.+..
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 889999999999999999999999999999999998764
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3.9e-23 Score=239.54 Aligned_cols=297 Identities=18% Similarity=0.141 Sum_probs=228.2
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHH-HHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLS-FFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~ 565 (821)
-.++|++|.+.++.... ..+..|..+++|++|+|++|.++.++ ..++++++|++|++++|.+..+|.. ++ +++
T Consensus 24 ~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLS 98 (549)
T ss_dssp CCTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCT
T ss_pred CCCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc-cCC
Confidence 34789999999988653 44567899999999999999999665 6899999999999999999988876 77 999
Q ss_pred cceEEecCCcccccc--hhhhccCccCceeecCCcccCCCCC-CCcCCCCCcceeccccC---CcchhhhcCCCCCCCeE
Q 045113 566 NLYTLDMPFSYIDHT--ADEFWKMKKLRHLNFGSITLPAHPG-NYCGSLENLNFISALYP---CCCTKDLLGRLPNLRNL 639 (821)
Q Consensus 566 ~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~L~~~~~~~~~p-~~i~~l~~L~~L~~~~~---~~~~~~~l~~l~~L~~L 639 (821)
+|++|++++|.+..+ |..+.++++|++|++++|...+.+| ..++.+++|++|++..+ +..+.. ++.+++|+.|
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceE
Confidence 999999999988754 6789999999999999998556665 57999999999999884 245556 9999999999
Q ss_pred EEecccccchhHHHHH-ccCCCCcCEEEeecCC-------------CCCCCCeeEecc--------------cCC-----
Q 045113 640 RIQGDLSYNQSLLSKS-LCRLSCLESLKLANES-------------KMPRLSKIILAE--------------YVF----- 686 (821)
Q Consensus 640 ~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~-------------~~~~L~~l~l~~--------------~~~----- 686 (821)
+++.+. ...++.. +..+++|+.|+++.|. .+++|+.+.+.+ ...
T Consensus 178 ~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 178 TLHLSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEECSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ecccCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 999883 2334443 3568889999998742 133455554432 011
Q ss_pred ------------------------------------------------------CCCcceEEEecccCCCCCcccc-cCC
Q 045113 687 ------------------------------------------------------PHSLTHLSFSNTDLMDDPMPAL-EKL 711 (821)
Q Consensus 687 ------------------------------------------------------~~~L~~L~L~~~~l~~~~~~~l-~~l 711 (821)
+++|+.|++++|.+. ..|..+ ..+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcC
Confidence 134556666666553 344444 578
Q ss_pred CCCCEEEEeccccCCCee--eecCCCCcccceeeeccCCCcccee---eccccccccceeEEeecCCCCCCccccCCCCC
Q 045113 712 PLLQVLKLKQNSYSGRKL--TCGSDGFPRLKVLHLKSMLWLEEWT---MGTGAMPKLECLIINPCAYLKKMPEQLWCIKS 786 (821)
Q Consensus 712 ~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~ 786 (821)
++|+.|++++|.+.+..+ ....+.+++|++|++++| .+..++ ..+..+++|+.|++++|. ++.+|..+..+++
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~ 411 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEK 411 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTT
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhccccc
Confidence 899999999888766432 122567899999999998 465554 236788999999999884 6688888888899
Q ss_pred CCEEEEeCCc
Q 045113 787 LNNFNCWWPQ 796 (821)
Q Consensus 787 L~~L~l~~c~ 796 (821)
|++|++++|.
T Consensus 412 L~~L~Ls~N~ 421 (549)
T 2z81_A 412 MRFLNLSSTG 421 (549)
T ss_dssp CCEEECTTSC
T ss_pred ccEEECCCCC
Confidence 9999998886
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=230.85 Aligned_cols=269 Identities=18% Similarity=0.135 Sum_probs=226.4
Q ss_pred CceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccc-cHHHHhccccceEEecCCcccccchhh-hccCccCceee
Q 045113 518 KLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSL-PLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLN 594 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~ 594 (821)
+.+++|+|++|.++.+ |..+.++++|++|+|++|.+..+ |..+. ++++|++|+|++|.+..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 5899999999999976 46899999999999999999966 66777 999999999999999999764 68999999999
Q ss_pred cCCcccCCCCCCCcCCCCCcceeccccC--Ccc-hhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC
Q 045113 595 FGSITLPAHPGNYCGSLENLNFISALYP--CCC-TKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES 671 (821)
Q Consensus 595 L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 671 (821)
+++|.+....|..+..+++|++|++..| ... +.. +..+++|+.|+++++. .....+..+..+++|+.|+++.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n- 186 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHL- 186 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESC-
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCC-
Confidence 9999998878888999999999999885 233 344 8999999999999983 33333456889999999999965
Q ss_pred CCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcc
Q 045113 672 KMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLE 751 (821)
Q Consensus 672 ~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 751 (821)
.+..+....+..+++|+.|++++|...+..++.....++|+.|+|++|.+.... ...+..+++|+.|+|++|. +.
T Consensus 187 ---~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~ 261 (477)
T 2id5_A 187 ---NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNP-IS 261 (477)
T ss_dssp ---CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECCSSC-CC
T ss_pred ---cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECCCCc-CC
Confidence 566666556788999999999999877777777777789999999988877532 2345789999999999985 66
Q ss_pred ceee-ccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 752 EWTM-GTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 752 ~~~~-~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.++. .+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 5543 47789999999999997655557789999999999999985
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=246.39 Aligned_cols=312 Identities=20% Similarity=0.152 Sum_probs=216.6
Q ss_pred CCCceeEEEEEcCCCccccc-C--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAYLD-D--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~-~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~ 542 (821)
.+..+++|.+..+....... . .+++|++|.+.++... ..+.+..|.++++|++|+|++|.+..+ |..++++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 56789999999887655422 2 8999999999988543 224467789999999999999999855 788999999
Q ss_pred ceEEeecCCCCcc-ccHH--HHhccccceEEecCCcccccc--hhhhccCccCceeecCCcccCCCCCCCcCCC--CCcc
Q 045113 543 LRYLKLNIPSLKS-LPLS--FFNYLLNLYTLDMPFSYIDHT--ADEFWKMKKLRHLNFGSITLPAHPGNYCGSL--ENLN 615 (821)
Q Consensus 543 Lr~L~L~~~~i~~-lp~~--i~~~L~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l--~~L~ 615 (821)
|++|+|++|.+.. +|.. +. ++++|++|++++|.+..+ +..++++++|++|++++|.+.+..|..++.+ ++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFR-NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCS-SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred cCEeeCcCCCCCcccccCcccc-ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 9999999999884 5554 77 999999999999988776 3578999999999999999887777777776 7888
Q ss_pred eeccccC---CcchhhhcCCCCC------CCeEEEecccccchhHHHHHcc---CC------------------------
Q 045113 616 FISALYP---CCCTKDLLGRLPN------LRNLRIQGDLSYNQSLLSKSLC---RL------------------------ 659 (821)
Q Consensus 616 ~L~~~~~---~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~l~---~~------------------------ 659 (821)
.|++..+ +..+.. ++.+++ |+.|+++++. .....+..+. ..
T Consensus 178 ~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp CCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred eEECCCCccccccccc-hhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 8888774 233333 555554 8888888773 2222221111 11
Q ss_pred -----------CCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCe
Q 045113 660 -----------SCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRK 728 (821)
Q Consensus 660 -----------~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 728 (821)
++|+.|+++.| .+..+....+..+++|+.|+|++|.+.+..+..+..+++|++|+|++|.+.+..
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHG----FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTC----CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CChhhhhccccCCccEEECCCC----cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 34444444432 222222222566777778888877776666667777778888888777665432
Q ss_pred eeecCCCCcccceeeeccCCCccceee-ccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 729 LTCGSDGFPRLKVLHLKSMLWLEEWTM-GTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 729 ~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
+..+..+++|+.|++++| .+..++. .+..+++|+.|++++|. ++.++. +++|+.|+++++.
T Consensus 331 -~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 331 -SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp -SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred -HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 334566777777777776 3454433 35667777777777765 333332 5566666666554
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=7.5e-23 Score=243.50 Aligned_cols=321 Identities=17% Similarity=0.126 Sum_probs=197.8
Q ss_pred CCCceeEEEEEcCCCccccc--C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccc-cccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAYLD--D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPS-EIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~--~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~ 542 (821)
.+..++++.+..+....... . .+++|++|.+.++.... ..+..|..+++|++|+|++|.++.+|. .++++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 45678899988876654433 2 78899999998877643 456778888999999999988888876 5888889
Q ss_pred ceEEeecCCCCcccc-HHHHhccccceEEecCCcccccc-hhhhccCccCceeecCCcccCCCCCCCcC--CCCCcceec
Q 045113 543 LRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYIDHT-ADEFWKMKKLRHLNFGSITLPAHPGNYCG--SLENLNFIS 618 (821)
Q Consensus 543 Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~i~--~l~~L~~L~ 618 (821)
|++|++++|.+..+| ..+. ++++|++|++++|.+..+ |..+.++++|++|++++|.+.+..+..++ .+++|+.|+
T Consensus 99 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCEEECCCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 999999988888776 4566 888888888888877665 45567788888888887776543333222 335566665
Q ss_pred cccC---Ccchhh--------------------------------------------------hcCCCC--CCCeEEEec
Q 045113 619 ALYP---CCCTKD--------------------------------------------------LLGRLP--NLRNLRIQG 643 (821)
Q Consensus 619 ~~~~---~~~~~~--------------------------------------------------~l~~l~--~L~~L~l~~ 643 (821)
+..+ +..+.. .+..++ +|+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 5542 111111 022222 256666655
Q ss_pred ccccchhHHHHHccCCCCcCEEEeecCC----------CCCCCCeeEec-------------------ccCCCCCcceEE
Q 045113 644 DLSYNQSLLSKSLCRLSCLESLKLANES----------KMPRLSKIILA-------------------EYVFPHSLTHLS 694 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~----------~~~~L~~l~l~-------------------~~~~~~~L~~L~ 694 (821)
|. .....+..+..+++|+.|+++.|. .+++|+.+.+. .+..+++|+.|+
T Consensus 258 n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 258 NN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp SC--CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CC--cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 52 222223456667777777777641 34566666664 245677888888
Q ss_pred EecccCCCCCcccccCCCCCCEEEEeccccCCCeeeec-C--CCCcccceeeeccCCCccce-eeccccccccceeEEee
Q 045113 695 FSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCG-S--DGFPRLKVLHLKSMLWLEEW-TMGTGAMPKLECLIINP 770 (821)
Q Consensus 695 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~--~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~i~~ 770 (821)
+++|.+.+..+..+.++++|++|++++|.+....+... + ...++|+.|++++|. +..+ +..+..+++|+.|++++
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhhCCCCCCEEeCCC
Confidence 88888877767778888888888887665433221110 0 011345555555442 2222 23344455555555555
Q ss_pred cCCCCCCc-cccCCCCCCCEEEEeCC
Q 045113 771 CAYLKKMP-EQLWCIKSLNNFNCWWP 795 (821)
Q Consensus 771 c~~l~~lp-~~l~~l~~L~~L~l~~c 795 (821)
|.....+| ..+.++++|++|++++|
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CcCccccCcccccCcccccEEecCCC
Confidence 54333333 23444444555544444
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.9e-23 Score=239.98 Aligned_cols=270 Identities=16% Similarity=0.154 Sum_probs=226.2
Q ss_pred cCCceeEEEeCCCCCCccccc-ccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccchh-hhccCccCce
Q 045113 516 MYKLLRVLDLGSLVLNQYPSE-IENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRH 592 (821)
Q Consensus 516 ~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~ 592 (821)
.++++++|+++++.+..+|.. +.++++|++|+|++|.+..+|. .+. .+++|++|+|++|.+..+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 467899999999999988865 6789999999999999997775 777 99999999999999988865 5689999999
Q ss_pred eecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecC
Q 045113 593 LNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANE 670 (821)
Q Consensus 593 L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 670 (821)
|++++|.+....+..++.+++|++|++.+| ...+...++.+++|+.|++++|. ... + .+..+++|+.|++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--ChhhhhhhhhhhcccC
Confidence 999999996444444699999999999985 33333338999999999999984 211 1 3566889999999986
Q ss_pred C-----CCCCCCeeEecc-------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcc
Q 045113 671 S-----KMPRLSKIILAE-------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPR 738 (821)
Q Consensus 671 ~-----~~~~L~~l~l~~-------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 738 (821)
. .+++|+.|.+++ ...+++|+.|+|++|.+++ +++++.+++|+.|+|++|.+.+. .+..+..+++
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 279 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQR 279 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSS
T ss_pred ccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC-CHHHhcCccC
Confidence 4 566788888876 2345789999999999875 57899999999999998888764 3445778999
Q ss_pred cceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 739 LKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 739 L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
|+.|+|++| .+..++.....+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 280 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 280 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 999999997 678888888889999999999996 55799889999999999999987
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=5e-23 Score=239.71 Aligned_cols=130 Identities=20% Similarity=0.133 Sum_probs=114.1
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCcccc-HHHHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLP-LSFFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~ 565 (821)
-.+++++|.+.++.... .....|..+++|++|+|++|.++.++ ..++++++|++|++++|.+..+| ..+. .++
T Consensus 26 l~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCCE----ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCT
T ss_pred ccccccEEEccCCccCc----cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc-Ccc
Confidence 34679999999988753 44567899999999999999999765 57899999999999999999776 5677 999
Q ss_pred cceEEecCCcccccchh-hhccCccCceeecCCcccCC-CCCCCcCCCCCcceeccccC
Q 045113 566 NLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPA-HPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 566 ~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~-~~p~~i~~l~~L~~L~~~~~ 622 (821)
+|++|++++|.+..+|. .++++++|++|++++|.+.. .+|..++++++|++|++..+
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 99999999999998876 68999999999999999866 57999999999999998874
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.8e-22 Score=240.21 Aligned_cols=301 Identities=18% Similarity=0.144 Sum_probs=220.3
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccccHH-HHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSLPLS-FFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~ 565 (821)
-.+++++|.+.++.... .+...|.++++|++|+|++|.++.+ |..++++++|++|++++|.+..+|.. +. +++
T Consensus 23 ~~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~ 97 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCT 97 (680)
T ss_dssp SCTTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT-TCT
T ss_pred cCCCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc-cCC
Confidence 34789999999987653 5667799999999999999999855 67789999999999999999999974 77 999
Q ss_pred cceEEecCCcccccch-hhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--Ccchhhhc--CCCCCCCeEE
Q 045113 566 NLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLL--GRLPNLRNLR 640 (821)
Q Consensus 566 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l--~~l~~L~~L~ 640 (821)
+|++|++++|.+..+| ..++++++|++|++++|.+.+..|..++++++|++|++..+ ...+...+ ..+++|+.|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 9999999999998886 57899999999999999998888888999999999999884 22222213 3568999999
Q ss_pred EecccccchhHHHHHccCCCCcCEEEeecCC-------------CCCCCCeeEecc----------cCCC--CCcceEEE
Q 045113 641 IQGDLSYNQSLLSKSLCRLSCLESLKLANES-------------KMPRLSKIILAE----------YVFP--HSLTHLSF 695 (821)
Q Consensus 641 l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-------------~~~~L~~l~l~~----------~~~~--~~L~~L~L 695 (821)
++++. ..+..+..+..+.+|+.|++..+. ..++|+.|.+.+ +..+ ++|+.|+|
T Consensus 178 L~~n~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 178 LSSNQ--IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp CTTCC--CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred CCCCc--ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 99873 333334455556666666654321 124555555544 2233 34888888
Q ss_pred ecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcc-----ceee----cccccccccee
Q 045113 696 SNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLE-----EWTM----GTGAMPKLECL 766 (821)
Q Consensus 696 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~~~~----~~~~l~~L~~L 766 (821)
++|.+.+..+..++.+++|+.|++++|.+.+. .+..+.++++|+.|+++++..-. .+|. .+..+++|+.|
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 88887766667778888888888887766543 23345677788888887643211 2221 45567778888
Q ss_pred EEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 767 IINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 767 ~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
++++|......|..+.++++|++|++++|.
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 887776554445567777777777777664
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=7.7e-22 Score=222.07 Aligned_cols=289 Identities=17% Similarity=0.091 Sum_probs=170.0
Q ss_pred CceeEEEEEcCCCcccccC-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEe
Q 045113 469 NVKRFFALEQQSDFAYLDD-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLK 547 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~~~~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~ 547 (821)
..++++.+..+.....+.. .+++|++|.+.++.... . + +..+++|++|++++|.++.+| ++++++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT----L-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC----C-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe----E-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 3455555555544333333 56666666666665442 1 1 556666666666666666554 66666666666
Q ss_pred ecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-cch
Q 045113 548 LNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-CCT 626 (821)
Q Consensus 548 L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~ 626 (821)
+++|.+..+| +. .+++|++|++++|.+..+| ++.+++|++|++++|...+.+ .++.+++|++|++..+. ..+
T Consensus 113 L~~N~l~~l~--~~-~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 113 CDTNKLTKLD--VS-QNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CCSSCCSCCC--CT-TCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCeec--CC-CCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 6666666654 45 6666666666666665553 556666666666666443444 25566666666666531 111
Q ss_pred hhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcc
Q 045113 627 KDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMP 706 (821)
Q Consensus 627 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~ 706 (821)
. ++.+++|+.|+++++. .. .+ .+..+++|+.|+++.| .+..+. +..+++|+.|++++|.+++..+
T Consensus 186 -~-l~~l~~L~~L~l~~N~--l~-~~--~l~~l~~L~~L~Ls~N----~l~~ip---~~~l~~L~~L~l~~N~l~~~~~- 250 (457)
T 3bz5_A 186 -D-VSQNKLLNRLNCDTNN--IT-KL--DLNQNIQLTFLDCSSN----KLTEID---VTPLTQLTYFDCSVNPLTELDV- 250 (457)
T ss_dssp -C-CTTCTTCCEEECCSSC--CS-CC--CCTTCTTCSEEECCSS----CCSCCC---CTTCTTCSEEECCSSCCSCCCC-
T ss_pred -c-cccCCCCCEEECcCCc--CC-ee--ccccCCCCCEEECcCC----cccccC---ccccCCCCEEEeeCCcCCCcCH-
Confidence 2 5566666666666653 11 11 2556666666666644 344332 4567778888888887765433
Q ss_pred cccCCCCCCEE----------EEeccccCCCeeeecCCCCcccceeeeccCCCccceeec--------cccccccceeEE
Q 045113 707 ALEKLPLLQVL----------KLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMG--------TGAMPKLECLII 768 (821)
Q Consensus 707 ~l~~l~~L~~L----------~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~--------~~~l~~L~~L~i 768 (821)
+.+++|+.| ++++|.+.+.. ..+.+++|+.|++++|+.+..++.. +..+++|+.|++
T Consensus 251 --~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~---~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 251 --STLSKLTTLHCIQTDLLEIDLTHNTQLIYF---QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp --TTCTTCCEEECTTCCCSCCCCTTCTTCCEE---ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred --HHCCCCCEEeccCCCCCEEECCCCccCCcc---cccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 344444444 34433333322 2456788888888888776666532 345566777777
Q ss_pred eecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 769 NPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 769 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
++|. ++.+| +.++++|+.|+++++.
T Consensus 326 ~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 326 NNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred CCCc-ccccc--cccCCcCcEEECCCCC
Confidence 7664 34453 7788899999888765
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.1e-22 Score=224.29 Aligned_cols=271 Identities=17% Similarity=0.065 Sum_probs=219.3
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.+++|++|.+.++.... . + .+..+++|++|+|++|.++.+| ++.+++|++|++++|.+..+| ++ .+++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~----~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~-~l~~L 108 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD----M-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT-PLTKL 108 (457)
T ss_dssp HHTTCCEEECCSSCCCC----C-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT-TCTTC
T ss_pred HcCCCCEEEccCCCccc----C-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC-CCCcC
Confidence 68999999999987653 2 2 5789999999999999999886 899999999999999999886 77 99999
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEecccc
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQGDLS 646 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 646 (821)
++|++++|.+..+| ++.+++|++|++++|.+.+ ++ ++.+++|++|++..+ ...... ++.+++|+.|+++++.
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~- 181 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK- 181 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC-
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc-
Confidence 99999999998886 8899999999999999865 43 889999999999885 211124 8889999999999984
Q ss_pred cchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 647 YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 647 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
...++ +..+++|+.|+++.| .++.+. +..+++|+.|++++|.+++ .| ++.+++|+.|++++|.+.+
T Consensus 182 --l~~l~--l~~l~~L~~L~l~~N----~l~~~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 182 --ITELD--VSQNKLLNRLNCDTN----NITKLD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp --CCCCC--CTTCTTCCEEECCSS----CCSCCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred --cceec--cccCCCCCEEECcCC----cCCeec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 22233 788899999999865 455542 5678999999999999876 33 8899999999999998887
Q ss_pred CeeeecCCCCcccc----------eeeeccCCCccceeeccccccccceeEEeecCCCCCCcc--------ccCCCCCCC
Q 045113 727 RKLTCGSDGFPRLK----------VLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPE--------QLWCIKSLN 788 (821)
Q Consensus 727 ~~~~~~~~~~~~L~----------~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~--------~l~~l~~L~ 788 (821)
.. .+.+++|+ .|++++|+.+..+| .+.+++|+.|++++|+.++.+|. .+.++++|+
T Consensus 248 ~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 248 LD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp CC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred cC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 43 34555554 55566665555555 46789999999999988777664 245667788
Q ss_pred EEEEeCCc
Q 045113 789 NFNCWWPQ 796 (821)
Q Consensus 789 ~L~l~~c~ 796 (821)
+|+++++.
T Consensus 322 ~L~L~~N~ 329 (457)
T 3bz5_A 322 YLYLNNTE 329 (457)
T ss_dssp EEECTTCC
T ss_pred EEECCCCc
Confidence 88777765
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.2e-23 Score=223.01 Aligned_cols=243 Identities=19% Similarity=0.149 Sum_probs=133.1
Q ss_pred CceeEEEeCCCCCC---cccccccCCCCceEEeecC-CCCc-cccHHHHhccccceEEecCCcccc-cchhhhccCccCc
Q 045113 518 KLLRVLDLGSLVLN---QYPSEIENLSLLRYLKLNI-PSLK-SLPLSFFNYLLNLYTLDMPFSYID-HTADEFWKMKKLR 591 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~l~~L~ 591 (821)
..++.|+|+++.++ .+|..++++++|++|++++ |.+. .+|..+. ++++|++|++++|.+. .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 35666666666665 4666666777777777763 5554 5666666 6777777777766665 5566666677777
Q ss_pred eeecCCcccCCCCCCCcCCCCCcceeccccC---CcchhhhcCCCC-CCCeEEEecccccchhHHHHHccCCCCcCEEEe
Q 045113 592 HLNFGSITLPAHPGNYCGSLENLNFISALYP---CCCTKDLLGRLP-NLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKL 667 (821)
Q Consensus 592 ~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~---~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l 667 (821)
+|++++|.+.+.+|..++.+++|++|++..| +..+.. +..++ +|+.|+++++ ...+.+|..+..++ |+.|++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEEC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEEC
Confidence 7777777666566666666666666665553 133344 66665 7777777776 23333444444443 555555
Q ss_pred ecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccC
Q 045113 668 ANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSM 747 (821)
Q Consensus 668 ~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 747 (821)
+ +|.+.+..+..++.+++|+.|+|++|.+.+.... ...+++|++|++++|
T Consensus 205 s----------------------------~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 205 S----------------------------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNN 254 (313)
T ss_dssp C----------------------------SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSS
T ss_pred c----------------------------CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCC
Confidence 4 4444444444444555555555554444332211 233445555555554
Q ss_pred CCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 748 LWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 748 ~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.....+|..+..+++|+.|++++|.....+|.. .++++|+.++++++|
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 322234444444555555555555433344433 444555555544443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2e-22 Score=217.53 Aligned_cols=262 Identities=15% Similarity=0.140 Sum_probs=156.3
Q ss_pred CceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCccc-cHHHHhccccceEEecCCcccccchhhhccCccCceeec
Q 045113 518 KLLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSL-PLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNF 595 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L 595 (821)
+.|++|+|++|.++.+|. .++++++|++|++++|.+..+ |..+. .+++|++|++++|.+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 456666666666665543 466666666666666666644 44555 66666666666666666655443 56666666
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccCC-----cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecC
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYPC-----CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANE 670 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 670 (821)
++|.+....+..++.+++|++|++..+. ..+.. +..+++|+.|+++++. ...+|..+ .++|+.|++++|
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~---l~~l~~~~--~~~L~~L~l~~n 202 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTN---ITTIPQGL--PPSLTELHLDGN 202 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSC---CCSCCSSC--CTTCSEEECTTS
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCc---cccCCccc--cccCCEEECCCC
Confidence 6666644444445666666666665531 22223 5666677777776652 11222222 256777777644
Q ss_pred CCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCc
Q 045113 671 SKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWL 750 (821)
Q Consensus 671 ~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 750 (821)
.+..+....+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.. ++.....+++|++|++++| .+
T Consensus 203 ----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N-~i 275 (330)
T 1xku_A 203 ----KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN-NI 275 (330)
T ss_dssp ----CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS-CC
T ss_pred ----cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCC-cC
Confidence 4555544556667777777777777766555567777777777777776653 3334566777777777776 35
Q ss_pred cceeec-c------ccccccceeEEeecCCCC--CCccccCCCCCCCEEEEeCC
Q 045113 751 EEWTMG-T------GAMPKLECLIINPCAYLK--KMPEQLWCIKSLNNFNCWWP 795 (821)
Q Consensus 751 ~~~~~~-~------~~l~~L~~L~i~~c~~l~--~lp~~l~~l~~L~~L~l~~c 795 (821)
..++.. + ...+.|+.|++.+|+... ..|..+..+++|+.++++++
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 544322 1 124677778888777532 33556777778888877664
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=243.13 Aligned_cols=298 Identities=21% Similarity=0.224 Sum_probs=231.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCC-Ccc-cccccCCCCceEEeecCCCCccc-cHHHHhcc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVL-NQY-PSEIENLSLLRYLKLNIPSLKSL-PLSFFNYL 564 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l-~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L 564 (821)
..+++++|.++++.... ..+..|..+++|++|+|++|.. ..+ |..++++++|++|+|++|.+..+ |..+. ++
T Consensus 22 lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-SC
T ss_pred CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-CC
Confidence 56789999999887753 4556789999999999999964 456 67899999999999999999865 67777 99
Q ss_pred ccceEEecCCccccc-chhh--hccCccCceeecCCcccCCCCC-CCcCCCCCcceeccccC---CcchhhhcCCC--CC
Q 045113 565 LNLYTLDMPFSYIDH-TADE--FWKMKKLRHLNFGSITLPAHPG-NYCGSLENLNFISALYP---CCCTKDLLGRL--PN 635 (821)
Q Consensus 565 ~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~L~~~~~~~~~p-~~i~~l~~L~~L~~~~~---~~~~~~~l~~l--~~ 635 (821)
++|++|+|++|.+.. +|.. +.++++|++|++++|.+.+..+ ..++++++|++|++..| ...+.. +..+ ++
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~ 175 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKT 175 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCc
Confidence 999999999998765 4554 8899999999999999866544 56899999999998884 233344 5555 78
Q ss_pred CCeEEEecccccchhHHHHHccCCC------CcCEEEeecCC-------------CCCCCCeeEecc-------------
Q 045113 636 LRNLRIQGDLSYNQSLLSKSLCRLS------CLESLKLANES-------------KMPRLSKIILAE------------- 683 (821)
Q Consensus 636 L~~L~l~~~~~~~~~~l~~~l~~~~------~L~~L~l~~~~-------------~~~~L~~l~l~~------------- 683 (821)
|+.|+++++. .....+..+..+. .|+.|++++|. ....+..+.+..
T Consensus 176 L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 176 LSFFSLAANS--LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SCCCEECCSB--SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred cceEECCCCc--cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 9999999883 3333333444443 39999998751 224455555431
Q ss_pred ------cCC--CCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce-e
Q 045113 684 ------YVF--PHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW-T 754 (821)
Q Consensus 684 ------~~~--~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~ 754 (821)
+.. +++|+.|+|++|.+....+..++.+++|+.|+|++|.+.+.. +..+.++++|++|+|++|. +..+ +
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~ 331 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL-LGELYS 331 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCC-CSCCCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCC-CCccCH
Confidence 111 378999999999988777888999999999999988876532 3346789999999999985 5544 6
Q ss_pred eccccccccceeEEeecCCCCCC-ccccCCCCCCCEEEEeCCc
Q 045113 755 MGTGAMPKLECLIINPCAYLKKM-PEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 755 ~~~~~l~~L~~L~i~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 796 (821)
..+..+++|+.|++++|.. ..+ |..+.++++|+.|++++|.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCSSCTTCCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCC
T ss_pred HHhcCCCCCCEEECCCCCC-CccChhhhcCCCCCCEEECCCCC
Confidence 6788999999999999964 445 4468899999999999987
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.2e-22 Score=219.55 Aligned_cols=282 Identities=17% Similarity=0.142 Sum_probs=187.7
Q ss_pred CceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccc-cHHHHhccccce
Q 045113 491 HLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSL-PLSFFNYLLNLY 568 (821)
Q Consensus 491 ~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~ 568 (821)
+++.+.+.++.... ++..+ .+.|++|+|++|.++.++ ..++++++|++|++++|.+..+ |..+. ++++|+
T Consensus 34 ~l~~l~~~~~~l~~----ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA----VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSS----CCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST-TCTTCC
T ss_pred cCCEEECCCCCccc----cCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh-CcCCCC
Confidence 46666666555432 22111 256777777777776553 4677777777777777777755 45565 777777
Q ss_pred EEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-----cchhhhcCCCCCCCeEEEec
Q 045113 569 TLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-----CCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 569 ~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~ 643 (821)
+|++++|.+..+|..+. ++|++|++++|.+....+..++.+++|++|++..+. ..+.. +..+ +|+.|++++
T Consensus 106 ~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISE 181 (332)
T ss_dssp EEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCS
T ss_pred EEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcC
Confidence 77777777777766554 677777777777754434446777777777776631 22233 5555 777777777
Q ss_pred ccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccc
Q 045113 644 DLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNS 723 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 723 (821)
+. ...+|..+. ++|+.|++++| .+..+....+..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.
T Consensus 182 n~---l~~l~~~~~--~~L~~L~l~~n----~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 182 AK---LTGIPKDLP--ETLNELHLDHN----KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp SB---CSSCCSSSC--SSCSCCBCCSS----CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CC---CCccCcccc--CCCCEEECCCC----cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 63 222333322 57888888754 4555554556778899999999998887777788899999999999887
Q ss_pred cCCCeeeecCCCCcccceeeeccCCCccceeec-cc------cccccceeEEeecCCC--CCCccccCCCCCCCEEEEeC
Q 045113 724 YSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMG-TG------AMPKLECLIINPCAYL--KKMPEQLWCIKSLNNFNCWW 794 (821)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~------~l~~L~~L~i~~c~~l--~~lp~~l~~l~~L~~L~l~~ 794 (821)
+.. ++.....+++|+.|++++| .+..++.. +. .+++|+.|++.+|+.. ...|..+..+++|+.|++++
T Consensus 253 l~~--lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 253 LSR--VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CCB--CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred Cee--cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 763 3344667889999999987 46655432 21 2578999999999865 34566788899999999988
Q ss_pred Cc
Q 045113 795 PQ 796 (821)
Q Consensus 795 c~ 796 (821)
+.
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 75
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=6.7e-23 Score=219.29 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=175.6
Q ss_pred CCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCC-CCCC-cccccccCCCCceEEeecCCCCc-cccHHHHhcccc
Q 045113 490 PHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGS-LVLN-QYPSEIENLSLLRYLKLNIPSLK-SLPLSFFNYLLN 566 (821)
Q Consensus 490 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 566 (821)
.+++.|.+.++.... ....+..|..+++|++|+|++ +.+. .+|..++++++|++|++++|.+. .+|..+. ++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTT
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCC
Confidence 577888887776541 002345788899999999995 7766 78888999999999999999988 8888888 9999
Q ss_pred ceEEecCCcccc-cchhhhccCccCceeecCCcccCCCCCCCcCCCC-CcceeccccC---CcchhhhcCCCCCCCeEEE
Q 045113 567 LYTLDMPFSYID-HTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLE-NLNFISALYP---CCCTKDLLGRLPNLRNLRI 641 (821)
Q Consensus 567 L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~-~L~~L~~~~~---~~~~~~~l~~l~~L~~L~l 641 (821)
|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..++.++ +|++|++..| +..+.. +..++ |+.|++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~L 204 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEEC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEEC
Confidence 999999999877 6788899999999999999999878898898888 8999998885 345555 77776 999999
Q ss_pred ecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEec
Q 045113 642 QGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQ 721 (821)
Q Consensus 642 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 721 (821)
+++ ...+..+..+..+++|+.|+++.| .+... +..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++
T Consensus 205 s~N--~l~~~~~~~~~~l~~L~~L~L~~N----~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 205 SRN--MLEGDASVLFGSDKNTQKIHLAKN----SLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSS--EEEECCGGGCCTTSCCSEEECCSS----EECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred cCC--cccCcCCHHHhcCCCCCEEECCCC----ceeee-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 988 344445566667777777777643 22211 11134456666666666666555566666666666666666
Q ss_pred cccCCCeeeecCCCCcccceeeeccCC
Q 045113 722 NSYSGRKLTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 722 ~~~~~~~~~~~~~~~~~L~~L~L~~~~ 748 (821)
|.+.+..+. ...+++|+.|++.+|+
T Consensus 278 N~l~~~ip~--~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 278 NNLCGEIPQ--GGNLQRFDVSAYANNK 302 (313)
T ss_dssp SEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred CcccccCCC--CccccccChHHhcCCC
Confidence 655543322 1445555555555554
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=7.5e-22 Score=213.22 Aligned_cols=284 Identities=17% Similarity=0.122 Sum_probs=218.2
Q ss_pred eeEEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeec
Q 045113 471 KRFFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLN 549 (821)
Q Consensus 471 ~r~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~ 549 (821)
.+.+.+........+..-.+++++|.+.++.... ..+..|..+++|++|+|++|.++.+ |..++++++|++|+++
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555555554444433345799999999887653 4556789999999999999999966 7789999999999999
Q ss_pred CCCCccccHHHHhccccceEEecCCcccccchh-hhccCccCceeecCCcccCC--CCCCCcCCCCCcceeccccC--Cc
Q 045113 550 IPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPA--HPGNYCGSLENLNFISALYP--CC 624 (821)
Q Consensus 550 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~--~~p~~i~~l~~L~~L~~~~~--~~ 624 (821)
+|.+..+|..+. ++|++|++++|.+..+|. .+.++++|++|++++|.+.. ..|..+..+ +|+.|++..+ ..
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 999999997764 799999999999998876 48899999999999999853 566777777 9999998884 33
Q ss_pred chhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCC
Q 045113 625 CTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDP 704 (821)
Q Consensus 625 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~ 704 (821)
.+.. +. ++|+.|+++++. .....+..+..+++|+.|++++| .+..+....+..+++|+.|+|++|.++ ..
T Consensus 187 l~~~-~~--~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 187 IPKD-LP--ETLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGHN----QIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp CCSS-SC--SSCSCCBCCSSC--CCCCCTTSSTTCTTCSCCBCCSS----CCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred cCcc-cc--CCCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCC----cCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 4433 33 789999999983 33333457888999999999865 566555445678899999999999987 67
Q ss_pred cccccCCCCCCEEEEeccccCCCeeeec-----CCCCcccceeeeccCCCc--cceeeccccccccceeEEeecC
Q 045113 705 MPALEKLPLLQVLKLKQNSYSGRKLTCG-----SDGFPRLKVLHLKSMLWL--EEWTMGTGAMPKLECLIINPCA 772 (821)
Q Consensus 705 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l--~~~~~~~~~l~~L~~L~i~~c~ 772 (821)
|..+..+++|+.|++++|.+.+...... ...+++|+.|++.+|+.. ...+..+..+++|+.|++++|.
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7789999999999999988765432111 122678999999999743 2234457789999999999885
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2.1e-21 Score=209.59 Aligned_cols=264 Identities=18% Similarity=0.180 Sum_probs=214.2
Q ss_pred CCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccc-hhhhccCccCceee
Q 045113 517 YKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHT-ADEFWKMKKLRHLN 594 (821)
Q Consensus 517 ~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~ 594 (821)
..++++++++++.++.+|..+. ++|++|++++|.+..+|. .+. ++++|++|++++|.+..+ |..+.++++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3478999999999999997665 689999999999998886 577 999999999999999888 78899999999999
Q ss_pred cCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCC
Q 045113 595 FGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESK 672 (821)
Q Consensus 595 L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 672 (821)
+++|.+. .+|..+. ++|++|++..+ ...+...+.++++|+.|+++++.....+..+..+..+++|+.|+++.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-- 181 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-- 181 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS--
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC--
Confidence 9999984 6776665 79999999884 344444489999999999999853223345567888999999999865
Q ss_pred CCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccc
Q 045113 673 MPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEE 752 (821)
Q Consensus 673 ~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 752 (821)
.+..+.. ..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+.. ......+++|++|++++| .+..
T Consensus 182 --~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~ 254 (330)
T 1xku_A 182 --NITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVK 254 (330)
T ss_dssp --CCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSS
T ss_pred --ccccCCc---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCC-cCcc
Confidence 3443321 23489999999999988777889999999999999988876532 223567899999999998 5778
Q ss_pred eeeccccccccceeEEeecCCCCCCcc-ccC------CCCCCCEEEEeCCc
Q 045113 753 WTMGTGAMPKLECLIINPCAYLKKMPE-QLW------CIKSLNNFNCWWPQ 796 (821)
Q Consensus 753 ~~~~~~~l~~L~~L~i~~c~~l~~lp~-~l~------~l~~L~~L~l~~c~ 796 (821)
+|..+..+++|+.|++++|. ++.+|. .+. ..++|+.|+++++|
T Consensus 255 lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 88888999999999999997 444543 222 35789999999998
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=7.3e-21 Score=224.24 Aligned_cols=322 Identities=16% Similarity=0.071 Sum_probs=216.7
Q ss_pred CCCceeEEEEEcCCCccccc--C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccc-cccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAYLD--D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPS-EIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~--~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~ 542 (821)
.|..+++|.+..+....... . .+++|++|.+.++.... +.+.+|..+++|++|+|++|.++.+|. .|.++++
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 46789999999887766543 2 89999999999987753 566789999999999999999998875 5899999
Q ss_pred ceEEeecCCCCccccHH-HHhccccceEEecCCccccc--chhhhccCccCceeecCCcccCCCCCCCcCC---------
Q 045113 543 LRYLKLNIPSLKSLPLS-FFNYLLNLYTLDMPFSYIDH--TADEFWKMKKLRHLNFGSITLPAHPGNYCGS--------- 610 (821)
Q Consensus 543 Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~--------- 610 (821)
|++|++++|.+..+|.. ++ ++++|++|++++|.+.. +|..+..+++|++|++++|.+.+..|..+..
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCEEECCCCcCCCCChhhhh-cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 99999999999988865 66 99999999999998765 4788899999999999988764221111100
Q ss_pred -------------------------------------------CCC----------------------------------
Q 045113 611 -------------------------------------------LEN---------------------------------- 613 (821)
Q Consensus 611 -------------------------------------------l~~---------------------------------- 613 (821)
+..
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 000
Q ss_pred ---------------------------------------------cceeccccC--Cc--------------------ch
Q 045113 614 ---------------------------------------------LNFISALYP--CC--------------------CT 626 (821)
Q Consensus 614 ---------------------------------------------L~~L~~~~~--~~--------------------~~ 626 (821)
|+.|++..+ .. .+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 111111000 00 00
Q ss_pred hhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC---------C-------------------------
Q 045113 627 KDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES---------K------------------------- 672 (821)
Q Consensus 627 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---------~------------------------- 672 (821)
.. ...+++|+.|+++.+........+.....+.+|+.|++..+. .
T Consensus 365 ~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 365 FS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CC-CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred cc-cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 00 112344555555444211111122222333444444443310 1
Q ss_pred CCCCCeeEecc----------cCCCCCcceEEEecccCCC-CCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccce
Q 045113 673 MPRLSKIILAE----------YVFPHSLTHLSFSNTDLMD-DPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKV 741 (821)
Q Consensus 673 ~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 741 (821)
..++..+.+.. +..+++|+.|+|++|.... ..+..+..+++|+.|+|++|.+.+. .+..+.++++|++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l-~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc-ChHHHcCCCCCCE
Confidence 22333333322 4556778888888876432 3556788899999999998877653 2344678899999
Q ss_pred eeeccCCCcccee-eccccccccceeEEeecCCCCCCccccCCC-CCCCEEEEeCCc
Q 045113 742 LHLKSMLWLEEWT-MGTGAMPKLECLIINPCAYLKKMPEQLWCI-KSLNNFNCWWPQ 796 (821)
Q Consensus 742 L~L~~~~~l~~~~-~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 796 (821)
|+|++| .+..++ ..+..+++|+.|++++|......|..+.++ ++|+.|+++++|
T Consensus 523 L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 523 LNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999998 566664 457889999999999997666567778887 689999998744
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.1e-21 Score=208.96 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=146.9
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
..+++++|.+.++.... + +..+..+++|++|+|++|.++.+|..++++++|++|+|++|.+..+|..+. ++++|
T Consensus 79 ~~~~l~~L~L~~n~l~~----l-p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ----F-PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA-SLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCCSS----C-CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG-GCTTC
T ss_pred cccceeEEEccCCCchh----c-ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh-cCcCC
Confidence 45778888888877652 2 334566999999999999999999999999999999999999999999998 99999
Q ss_pred eEEecCCc-ccccchhhhcc---------CccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCC
Q 045113 568 YTLDMPFS-YIDHTADEFWK---------MKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPN 635 (821)
Q Consensus 568 ~~L~L~~~-~l~~lp~~i~~---------l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~ 635 (821)
++|++++| .+..+|..+.. +++|++|++++|.+. .+|..++.+++|++|++..| ...+.. ++.+++
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~ 230 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPK 230 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTT
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchh-hccCCC
Confidence 99999997 56777877654 899999999998885 77777777777777776663 234444 666666
Q ss_pred CCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCC
Q 045113 636 LRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQ 715 (821)
Q Consensus 636 L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 715 (821)
|+.|++++| ...+.+|..+..+++|+.|+++.| ++.......+..+++|+.|+|++|.+.+.+|..++++++|+
T Consensus 231 L~~L~Ls~n--~~~~~~p~~~~~l~~L~~L~L~~n----~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 231 LEELDLRGC--TALRNYPPIFGGRAPLKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CCEEECTTC--TTCCBCCCCTTCCCCCCEEECTTC----TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CCEEECcCC--cchhhhHHHhcCCCCCCEEECCCC----CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 666666665 233334444444455555554421 11111112233444455555555444444444555555555
Q ss_pred EEEEe
Q 045113 716 VLKLK 720 (821)
Q Consensus 716 ~L~L~ 720 (821)
.+.+.
T Consensus 305 ~l~l~ 309 (328)
T 4fcg_A 305 IILVP 309 (328)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 44444
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=9.9e-21 Score=206.29 Aligned_cols=248 Identities=16% Similarity=0.186 Sum_probs=158.5
Q ss_pred CceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCcccc-HHHHhccccceEEecCCcccccchhh-hccCccCceee
Q 045113 518 KLLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLN 594 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~ 594 (821)
++|++|++++|.++.+|. .+.++++|++|++++|.+..++ ..+. ++++|++|++++|.+..+|.. +.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC-CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 467777777777776654 6777777777777777777554 3455 777777777777777777654 66777777777
Q ss_pred cCCcccCCCCCC--CcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCC
Q 045113 595 FGSITLPAHPGN--YCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESK 672 (821)
Q Consensus 595 L~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 672 (821)
+++|.+. .+|. . +..+++|+.|+++++. ......+..+..+++|+.|++++|
T Consensus 131 L~~n~l~-~l~~~~~----------------------~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n-- 184 (353)
T 2z80_A 131 LLGNPYK-TLGETSL----------------------FSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDAS-- 184 (353)
T ss_dssp CTTCCCS-SSCSSCS----------------------CTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEET--
T ss_pred CCCCCCc-ccCchhh----------------------hccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCC--
Confidence 7777663 3333 3 4445555555555541 011111234455566666666643
Q ss_pred CCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeee--cCCCCcccceeeeccCCCc
Q 045113 673 MPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTC--GSDGFPRLKVLHLKSMLWL 750 (821)
Q Consensus 673 ~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~l 750 (821)
.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+..+.. .....+.++.+++.++. +
T Consensus 185 --~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l 261 (353)
T 2z80_A 185 --DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-I 261 (353)
T ss_dssp --TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-C
T ss_pred --CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-c
Confidence 445544445666778888888888764332233456788888888877776533211 12235667777777763 3
Q ss_pred c-----ceeeccccccccceeEEeecCCCCCCcccc-CCCCCCCEEEEeCCc
Q 045113 751 E-----EWTMGTGAMPKLECLIINPCAYLKKMPEQL-WCIKSLNNFNCWWPQ 796 (821)
Q Consensus 751 ~-----~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 796 (821)
. .++..+..+++|+.|++++|. ++.+|..+ .++++|++|+++++|
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 2 345556788999999999885 55788764 889999999998875
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=7.2e-20 Score=205.80 Aligned_cols=289 Identities=20% Similarity=0.177 Sum_probs=171.8
Q ss_pred CCceeEEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEe
Q 045113 468 KNVKRFFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLK 547 (821)
Q Consensus 468 ~~~~r~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~ 547 (821)
+..++.+.+..+.....+ ...++|++|.+.++..... + ...++|++|++++|.++.+| .++++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~lp-~~~~~L~~L~l~~n~l~~l-----~---~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKAL-----S---DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCC-----C---SCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCccc-cccCCCcEEECCCCccCcc-----c---CCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEE
Confidence 456777777665544321 2456777777777655421 0 11257778888887777777 477777888888
Q ss_pred ecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC-Ccch
Q 045113 548 LNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP-CCCT 626 (821)
Q Consensus 548 L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~ 626 (821)
+++|.+..+|.. ..+|++|++++|.+..+| .++++++|++|++++|.+.+ +|... ++|++|++..+ -..+
T Consensus 160 l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 160 VDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILEEL 230 (454)
T ss_dssp CCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSSC
T ss_pred CCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCCcc
Confidence 887777776643 247777777777777776 47777777777777777643 44422 46777777663 1233
Q ss_pred hhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC------CCCCCCeeEecc-----c-CCCCCcceEE
Q 045113 627 KDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES------KMPRLSKIILAE-----Y-VFPHSLTHLS 694 (821)
Q Consensus 627 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~------~~~~L~~l~l~~-----~-~~~~~L~~L~ 694 (821)
+. ++.+++|+.|+++++. ...+|. .+++|+.|+++.|. .+++|+.+.+++ + ..+++|+.|+
T Consensus 231 p~-~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~ 303 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 303 (454)
T ss_dssp CC-CTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred cc-cCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence 34 6777777777777763 111221 23567777776542 224555555554 1 2235677777
Q ss_pred EecccCCCCCcccccCC-CCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCC
Q 045113 695 FSNTDLMDDPMPALEKL-PLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAY 773 (821)
Q Consensus 695 L~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~ 773 (821)
+++|.+++ +..+ ++|+.|++++|.+.+. + ..+++|+.|++++| .+..+|. .+++|+.|++++|..
T Consensus 304 l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l--p---~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 304 ASSNEIRS-----LCDLPPSLEELNVSNNKLIEL--P---ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCSSCCSE-----ECCCCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred CcCCcCCc-----ccCCcCcCCEEECCCCccccc--c---ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCC
Confidence 77776543 2233 4777788877766651 1 23577888888776 4556654 467788888887765
Q ss_pred CC--CCccccCCC-------------CCCCEEEEeCCc
Q 045113 774 LK--KMPEQLWCI-------------KSLNNFNCWWPQ 796 (821)
Q Consensus 774 l~--~lp~~l~~l-------------~~L~~L~l~~c~ 796 (821)
.. .+|..+.++ ++|+.|++++++
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp SSCCCCCTTCCEEECCC---------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 54 566666666 677888777765
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=3.8e-22 Score=225.84 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=70.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCC----ceeEEEeCCCCCC-----cccccccCCCCceEEeecCCCCcc-cc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYK----LLRVLDLGSLVLN-----QYPSEIENLSLLRYLKLNIPSLKS-LP 557 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~----~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-lp 557 (821)
.+++|++|.+.++... ...+..++..++ +|++|+|++|.++ .+|..+.++++|++|++++|.+.. -+
T Consensus 54 ~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 54 VNPALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp TCTTCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred hCCCcCEEeCCCCcCC---hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 4455555555554432 112222333333 4555555555554 234555555555555555555541 12
Q ss_pred HHHHh----ccccceEEecCCccccc-----chhhhccCccCceeecCCcccCCCCCCCcC-----CCCCcceeccccCC
Q 045113 558 LSFFN----YLLNLYTLDMPFSYIDH-----TADEFWKMKKLRHLNFGSITLPAHPGNYCG-----SLENLNFISALYPC 623 (821)
Q Consensus 558 ~~i~~----~L~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~-----~l~~L~~L~~~~~~ 623 (821)
..+.. .+++|++|++++|.+.. ++..+..+++|++|++++|.+....+..+. .+++|++|++..+.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 22221 12345555555554432 244445555666666655554322111111 23455555555521
Q ss_pred --c-----chhhhcCCCCCCCeEEEecc
Q 045113 624 --C-----CTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 624 --~-----~~~~~l~~l~~L~~L~l~~~ 644 (821)
. .+.. +..+++|+.|++++|
T Consensus 211 l~~~~~~~l~~~-l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 211 VTSDNCRDLCGI-VASKASLRELALGSN 237 (461)
T ss_dssp CBTTHHHHHHHH-HHHCTTCCEEECCSS
T ss_pred CcHHHHHHHHHH-HHhCCCccEEeccCC
Confidence 1 1222 455566666666655
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=3e-20 Score=198.22 Aligned_cols=222 Identities=23% Similarity=0.242 Sum_probs=150.4
Q ss_pred CceeEEEeCCCCCCccccc-ccCCCCceEEeecCCCCccc---cHHHHhccccceEEecCCcccccchhhhccCccCcee
Q 045113 518 KLLRVLDLGSLVLNQYPSE-IENLSLLRYLKLNIPSLKSL---PLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHL 593 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 593 (821)
++|++|+|++|.++.+|.. +.++++|++|++++|.+..+ |..+. .+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 4677777777777777654 57777788888877777644 56666 7777888888777777777777777788888
Q ss_pred ecCCcccCCCCC-CCcCCCCCcceeccccC--C-cchhhhcCCCCCCCeEEEecccccchh-HHHHHccCCCCcCEEEee
Q 045113 594 NFGSITLPAHPG-NYCGSLENLNFISALYP--C-CCTKDLLGRLPNLRNLRIQGDLSYNQS-LLSKSLCRLSCLESLKLA 668 (821)
Q Consensus 594 ~L~~~~~~~~~p-~~i~~l~~L~~L~~~~~--~-~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~~~~L~~L~l~ 668 (821)
++++|.+....+ ..+..+++|++|++..+ . ..+.. +..+++|+.|+++++. ..+ .+|..+..+++|+.|+++
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEECC
Confidence 887777744333 45677777777777663 1 22333 6677777777777762 222 345566677777777776
Q ss_pred cCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCC-cccceeeeccC
Q 045113 669 NESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGF-PRLKVLHLKSM 747 (821)
Q Consensus 669 ~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~L~~~ 747 (821)
+| .+..+....+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+... .....+ ++|++|++++|
T Consensus 184 ~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 184 QC----QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TS----CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTC
T ss_pred CC----CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCC
Confidence 54 5555555556677778888888887766555567777888888888776665432 223445 37888888776
Q ss_pred C
Q 045113 748 L 748 (821)
Q Consensus 748 ~ 748 (821)
+
T Consensus 259 ~ 259 (306)
T 2z66_A 259 D 259 (306)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=3.5e-20 Score=197.68 Aligned_cols=228 Identities=19% Similarity=0.203 Sum_probs=192.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc---cccccCCCCceEEeecCCCCccccHHHHhcc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY---PSEIENLSLLRYLKLNIPSLKSLPLSFFNYL 564 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L 564 (821)
-.++++.|.+.++.... .+..+|..+++|++|+|++|.++.+ |..+..+++|++|++++|.+..+|..+. .+
T Consensus 26 ~~~~l~~L~L~~n~l~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~-~l 100 (306)
T 2z66_A 26 IPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GL 100 (306)
T ss_dssp CCTTCCEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE-TC
T ss_pred CCCCCCEEECCCCccCc----cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcC-CC
Confidence 45789999999887653 5566789999999999999998744 6777789999999999999999998888 99
Q ss_pred ccceEEecCCcccccchh--hhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC---C-cchhhhcCCCCCCCe
Q 045113 565 LNLYTLDMPFSYIDHTAD--EFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP---C-CCTKDLLGRLPNLRN 638 (821)
Q Consensus 565 ~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~---~-~~~~~~l~~l~~L~~ 638 (821)
++|++|++++|.+..++. .+..+++|++|++++|.+....|..++.+++|++|++..+ + ..+.. +..+++|+.
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~ 179 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTF 179 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCE
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCE
Confidence 999999999999888864 7889999999999999998788888999999999999885 2 24455 899999999
Q ss_pred EEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCC-CCCEE
Q 045113 639 LRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLP-LLQVL 717 (821)
Q Consensus 639 L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~-~L~~L 717 (821)
|+++++. .....+..+..+++|+.|++++| .+..+....+..+++|+.|+|++|.+.+..+..+..+| +|+.|
T Consensus 180 L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 180 LDLSQCQ--LEQLSPTAFNSLSSLQVLNMSHN----NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp EECTTSC--CCEECTTTTTTCTTCCEEECTTS----CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred EECCCCC--cCCcCHHHhcCCCCCCEEECCCC----ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 9999983 33344667888999999999865 56665555577899999999999999888888999985 99999
Q ss_pred EEeccccCCC
Q 045113 718 KLKQNSYSGR 727 (821)
Q Consensus 718 ~L~~~~~~~~ 727 (821)
+|++|.+.+.
T Consensus 254 ~L~~N~~~~~ 263 (306)
T 2z66_A 254 NLTQNDFACT 263 (306)
T ss_dssp ECTTCCEECS
T ss_pred EccCCCeecc
Confidence 9999887653
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=201.27 Aligned_cols=247 Identities=19% Similarity=0.151 Sum_probs=180.9
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccccHH-HHhccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSLPLS-FFNYLL 565 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~ 565 (821)
-.++|++|.+.++.... .+...|..+++|++|+|++|.++.+ |..++++++|++|++++|.+..+|.. +. +++
T Consensus 50 ~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~ 124 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK-PLS 124 (353)
T ss_dssp CCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT-TCT
T ss_pred ccccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC-CCc
Confidence 45689999999888753 5556789999999999999999966 46799999999999999999999987 56 999
Q ss_pred cceEEecCCcccccchh--hhccCccCceeecCCcc-cCCCCCCCcCCCCCcceeccccC--C-cchhhhcCCCCCCCeE
Q 045113 566 NLYTLDMPFSYIDHTAD--EFWKMKKLRHLNFGSIT-LPAHPGNYCGSLENLNFISALYP--C-CCTKDLLGRLPNLRNL 639 (821)
Q Consensus 566 ~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~L~~~~-~~~~~p~~i~~l~~L~~L~~~~~--~-~~~~~~l~~l~~L~~L 639 (821)
+|++|++++|.+..+|. .+.++++|++|++++|. +....+..++.+++|++|++..+ . ..+.. +..+++|+.|
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 203 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHL 203 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccCCee
Confidence 99999999999999987 78899999999999985 54444667889999999998884 2 33455 8889999999
Q ss_pred EEecccccchhHHHHH-ccCCCCcCEEEeecCCCCCCCCeeEecc---cCCCCCcceEEEecccCCC----CCcccccCC
Q 045113 640 RIQGDLSYNQSLLSKS-LCRLSCLESLKLANESKMPRLSKIILAE---YVFPHSLTHLSFSNTDLMD----DPMPALEKL 711 (821)
Q Consensus 640 ~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~~~~L~~l~l~~---~~~~~~L~~L~L~~~~l~~----~~~~~l~~l 711 (821)
+++++. ...++.. +..+++|+.|++++| .+..+.... ...++.++.++|+++.+.+ ..+..++.+
T Consensus 204 ~l~~n~---l~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 204 ILHMKQ---HILLLEIFVDVTSSVECLELRDT----DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEECSC---STTHHHHHHHHTTTEEEEEEESC----BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cCCCCc---cccchhhhhhhcccccEEECCCC----ccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 999883 2344443 345778888888764 222222111 2345566677777766544 234556677
Q ss_pred CCCCEEEEeccccCCCeeeecCCCCcccceeeeccCC
Q 045113 712 PLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 712 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 748 (821)
++|+.|+|++|.+.. .....+..+++|++|++++|+
T Consensus 277 ~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCC
Confidence 777777777666653 111223566677777777764
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=5.7e-19 Score=204.68 Aligned_cols=254 Identities=18% Similarity=0.091 Sum_probs=127.0
Q ss_pred eeEEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecC
Q 045113 471 KRFFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNI 550 (821)
Q Consensus 471 ~r~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~ 550 (821)
++.+.+.++.....+..-.++|++|.+.++.... ++. .+++|++|+|++|.++.+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~----lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC----CCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcCccChhhCCCCcEEEecCCCCCC----CCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 4455555544443322223556666666555432 111 34556666666666655554 455566666666
Q ss_pred CCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhc
Q 045113 551 PSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLL 630 (821)
Q Consensus 551 ~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l 630 (821)
|.+..+|. .+.+|++|++++|.+..+|.. +++|++|++++|.+. .+|.. +.+|+.|
T Consensus 111 N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L------------- 166 (622)
T 3g06_A 111 NPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKL------------- 166 (622)
T ss_dssp CCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEE-------------
T ss_pred CcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEE-------------
Confidence 66655554 345566666666655555542 355666666666552 23321 2334444
Q ss_pred CCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccC
Q 045113 631 GRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEK 710 (821)
Q Consensus 631 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 710 (821)
++++|. ...+| ..+++|+.|+++.| .+..+. ..+++|+.|++++|.++. .+. .
T Consensus 167 ---------~L~~N~---l~~l~---~~~~~L~~L~Ls~N----~l~~l~----~~~~~L~~L~L~~N~l~~-l~~---~ 219 (622)
T 3g06_A 167 ---------WAYNNQ---LTSLP---MLPSGLQELSVSDN----QLASLP----TLPSELYKLWAYNNRLTS-LPA---L 219 (622)
T ss_dssp ---------ECCSSC---CSCCC---CCCTTCCEEECCSS----CCSCCC----CCCTTCCEEECCSSCCSS-CCC---C
T ss_pred ---------ECCCCC---CCCCc---ccCCCCcEEECCCC----CCCCCC----CccchhhEEECcCCcccc-cCC---C
Confidence 444431 11111 22344555555433 222211 123555666666665442 221 2
Q ss_pred CCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEE
Q 045113 711 LPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNF 790 (821)
Q Consensus 711 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L 790 (821)
+++|+.|+|++|.+.+. + ..+++|+.|+|++| .+..+|. .+++|+.|++++|. ++.+|..+.++++|+.|
T Consensus 220 ~~~L~~L~Ls~N~L~~l--p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSL--P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTV 289 (622)
T ss_dssp CTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEE
T ss_pred CCCCCEEEccCCccCcC--C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEE
Confidence 35566666665555441 1 34556666666665 4444443 45566666666653 34556666666666666
Q ss_pred EEeCCc
Q 045113 791 NCWWPQ 796 (821)
Q Consensus 791 ~l~~c~ 796 (821)
++++|+
T Consensus 290 ~L~~N~ 295 (622)
T 3g06_A 290 NLEGNP 295 (622)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 666654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=6.7e-20 Score=193.33 Aligned_cols=247 Identities=19% Similarity=0.150 Sum_probs=136.9
Q ss_pred CceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccc-cHHHHhccccceEEecCCcc-cccc-hhhhccCccCcee
Q 045113 518 KLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSL-PLSFFNYLLNLYTLDMPFSY-IDHT-ADEFWKMKKLRHL 593 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L 593 (821)
+.|+.|+|+++.++.+| ..+.++++|++|++++|.+..+ |..+. .+++|++|++++|. +..+ |..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 46666666666666554 3466666666666666666654 44555 66666666666664 6665 4556666666666
Q ss_pred ecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 594 NFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 594 ~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
++++|.+....|..+..+++|++|++.. +. .....+..+..+++|+.|++++|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~--l~~~~~~~~~~l~~L~~L~l~~n--- 163 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQD----------------------NA--LQALPDDTFRDLGNLTHLFLHGN--- 163 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCS----------------------SC--CCCCCTTTTTTCTTCCEEECCSS---
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCC----------------------Cc--ccccCHhHhccCCCccEEECCCC---
Confidence 6666666544455455555555555444 31 11111122344455555555433
Q ss_pred CCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce
Q 045113 674 PRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW 753 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 753 (821)
.++.+....+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.. ......+++|+.|++++|+.....
T Consensus 164 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 164 -RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECSG
T ss_pred -cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccCCC
Confidence 344443333555677777777777766665667777777777777776666532 222456777777777776422211
Q ss_pred eeccccccccceeEEeecCCCCCCccccCC--CCCCCEEEEeCC
Q 045113 754 TMGTGAMPKLECLIINPCAYLKKMPEQLWC--IKSLNNFNCWWP 795 (821)
Q Consensus 754 ~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~--l~~L~~L~l~~c 795 (821)
+. ...+..|+.+....+...-..|..+.+ +..|...++.+|
T Consensus 242 ~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 242 RA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp GG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred Cc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 11 111233444444444433345554432 445555566666
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=2.3e-20 Score=200.07 Aligned_cols=249 Identities=14% Similarity=0.065 Sum_probs=188.9
Q ss_pred hhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccC
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKM 587 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l 587 (821)
.+...+..+++|+.|+|++|.++.++ ..++++++|++|++++|.+...++ +. .+++|++|++++|.+..+| .+
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~-~l~~L~~L~Ls~n~l~~l~----~~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE-SLSTLRTLDLNNNYVQELL----VG 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ET-TCTTCCEEECCSSEEEEEE----EC
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hh-hcCCCCEEECcCCcccccc----CC
Confidence 45567778889999999999988665 678899999999999999886664 66 8999999999999888776 34
Q ss_pred ccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHc-cCCCCcCE
Q 045113 588 KKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSL-CRLSCLES 664 (821)
Q Consensus 588 ~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~ 664 (821)
++|++|++++|.+....+. .+++|++|++..| ...+...++.+++|+.|++++|. .....+..+ ..+++|+.
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEH 173 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCE
Confidence 8899999999988554333 3677888888884 23333227778899999998873 222223333 46788999
Q ss_pred EEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeee
Q 045113 665 LKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHL 744 (821)
Q Consensus 665 L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L 744 (821)
|++++| .++.+ .+...+++|+.|+|++|.+++ .++.+..+++|+.|+|++|.+.. ++.....+++|+.|++
T Consensus 174 L~L~~N----~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 174 LNLQYN----FIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDL 244 (317)
T ss_dssp EECTTS----CCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEEC
T ss_pred EECCCC----cCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEc
Confidence 999865 56655 334468999999999999864 45568899999999999888764 3444677899999999
Q ss_pred ccCCCc-cceeeccccccccceeEEeecCCCCCC
Q 045113 745 KSMLWL-EEWTMGTGAMPKLECLIINPCAYLKKM 777 (821)
Q Consensus 745 ~~~~~l-~~~~~~~~~l~~L~~L~i~~c~~l~~l 777 (821)
++|+.. ..++..+..+++|+.|++.+|..++..
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 998654 355666778999999999977766543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=3.4e-19 Score=200.90 Aligned_cols=239 Identities=19% Similarity=0.182 Sum_probs=125.6
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccc-cHHHHhccccceEEecCCcccccch-hhhccCccCceeecCCc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSL-PLSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSI 598 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~ 598 (821)
+.++.++..++.+|..+. ++|++|+|++|.+..+ |..+. ++++|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 445555555555554443 4566666666665544 23344 5666666666666555553 44555666666666666
Q ss_pred ccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCC
Q 045113 599 TLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 676 (821)
Q Consensus 599 ~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L 676 (821)
.+....+..++.+++|++|++..| ...+...+.++++|+.|+++++ ..+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------------------~~l 184 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------------KKL 184 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------------TTC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------------------CCc
Confidence 554333333444444444444432 1111211455555555555543 122
Q ss_pred CeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce-ee
Q 045113 677 SKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW-TM 755 (821)
Q Consensus 677 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~ 755 (821)
..+....+..+++|+.|+|++|.+++ .+.+..+++|+.|+|++|.+.+.. +..+..+++|+.|+|++|. +..+ +.
T Consensus 185 ~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~ 260 (452)
T 3zyi_A 185 EYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERN 260 (452)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSS--CCCCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSC-CCEECTT
T ss_pred cccChhhccCCCCCCEEECCCCcccc--cccccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCc-CceECHH
Confidence 22222224445566666666665543 234566666666666666554421 2334556666666666653 3333 33
Q ss_pred ccccccccceeEEeecCCCCCCc-cccCCCCCCCEEEEeCCc
Q 045113 756 GTGAMPKLECLIINPCAYLKKMP-EQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 756 ~~~~l~~L~~L~i~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 796 (821)
.+..+++|+.|++++|. ++.+| ..+..+++|+.|+++++|
T Consensus 261 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 45566677777777664 33443 345666777777776644
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=5.7e-20 Score=214.91 Aligned_cols=322 Identities=11% Similarity=0.022 Sum_probs=168.9
Q ss_pred CceeEEEEEcCCCccc--ccC--CCCC-ceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCc-----cccccc
Q 045113 469 NVKRFFALEQQSDFAY--LDD--YYPH-LHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQ-----YPSEIE 538 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~--~~~--~~~~-LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-----lp~~i~ 538 (821)
..++.+.+..+..... ... .+++ |++|.+.++... ....+..+...+++|++|+|++|.++. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 3466666665532211 011 1334 777777766531 122344555677788888888776542 333445
Q ss_pred CCCCceEEeecCCCCc-----cccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccC---CCCCCCcCC
Q 045113 539 NLSLLRYLKLNIPSLK-----SLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLP---AHPGNYCGS 610 (821)
Q Consensus 539 ~l~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~---~~~p~~i~~ 610 (821)
.+++|++|++++|.+. .++..+. ++++|++|++++|.+..+|..+.++++|++|+++.+... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIAR-NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHH-HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHh-hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6777788888777764 4444455 777888888888777777777777777777777643221 122233444
Q ss_pred CCC-----------------------cceeccccCC---cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCE
Q 045113 611 LEN-----------------------LNFISALYPC---CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLES 664 (821)
Q Consensus 611 l~~-----------------------L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~ 664 (821)
+++ |++|++.++. ..+...+..+++|+.|++.++ .....++.....+++|++
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCE
Confidence 444 4444444421 111111344555555555432 222333333344455555
Q ss_pred EEeec-----------C-C----------CCCCCCeeEecc----------cC-CCCCcceEEEec----ccCCCC----
Q 045113 665 LKLAN-----------E-S----------KMPRLSKIILAE----------YV-FPHSLTHLSFSN----TDLMDD---- 703 (821)
Q Consensus 665 L~l~~-----------~-~----------~~~~L~~l~l~~----------~~-~~~~L~~L~L~~----~~l~~~---- 703 (821)
|+++. + + .+++|+.|.+.. +. .+++|+.|++++ +.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 55551 1 1 244555555422 11 245555555542 222221
Q ss_pred -CcccccCCCCCCEEEEeccc--cCCCeeeecCCCCcccceeeeccCCCccc--eeeccccccccceeEEeecCCCC-CC
Q 045113 704 -PMPALEKLPLLQVLKLKQNS--YSGRKLTCGSDGFPRLKVLHLKSMLWLEE--WTMGTGAMPKLECLIINPCAYLK-KM 777 (821)
Q Consensus 704 -~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~i~~c~~l~-~l 777 (821)
.+..+.++++|+.|+|++|. +++..+......+++|++|+|++|. +.. ++.....+++|++|+|++|+... .+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 11123345555666554322 2222222212346677777777664 332 23334567888888888887321 24
Q ss_pred ccccCCCCCCCEEEEeCCc
Q 045113 778 PEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 778 p~~l~~l~~L~~L~l~~c~ 796 (821)
+....++++|++|++++|+
T Consensus 506 ~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCccCeeECcCCc
Confidence 4445677888888888887
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=5.3e-21 Score=216.44 Aligned_cols=327 Identities=15% Similarity=0.072 Sum_probs=224.3
Q ss_pred CCceeEEEEEcCCCccc--cc-C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCc-ccccc-cCCC
Q 045113 468 KNVKRFFALEQQSDFAY--LD-D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQ-YPSEI-ENLS 541 (821)
Q Consensus 468 ~~~~r~lsl~~~~~~~~--~~-~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i-~~l~ 541 (821)
+..++++.+.++..... .. . .+++|++|.+.++.........+...+..+++|++|+|++|.++. .+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 34677888876654322 11 2 688999999998886532222456778888999999999998863 22222 2344
Q ss_pred ----CceEEeecCCCCc-----cccHHHHhccccceEEecCCcccccc-hhhhc-----cCccCceeecCCcccCCC---
Q 045113 542 ----LLRYLKLNIPSLK-----SLPLSFFNYLLNLYTLDMPFSYIDHT-ADEFW-----KMKKLRHLNFGSITLPAH--- 603 (821)
Q Consensus 542 ----~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~-----~l~~L~~L~L~~~~~~~~--- 603 (821)
+|++|++++|.+. .+|..+. .+++|++|++++|.+... +..+. ..++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 6999999999887 4677777 899999999999976543 22222 356799999999987653
Q ss_pred -CCCCcCCCCCcceeccccCC---cchhh---hc-CCCCCCCeEEEeccccc--chhHHHHHccCCCCcCEEEeecCC--
Q 045113 604 -PGNYCGSLENLNFISALYPC---CCTKD---LL-GRLPNLRNLRIQGDLSY--NQSLLSKSLCRLSCLESLKLANES-- 671 (821)
Q Consensus 604 -~p~~i~~l~~L~~L~~~~~~---~~~~~---~l-~~l~~L~~L~l~~~~~~--~~~~l~~~l~~~~~L~~L~l~~~~-- 671 (821)
++..+..+++|++|++..+. ..+.. .+ ..+++|+.|++++|.-. ....++..+..+++|++|++++|.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 35556778899999988842 12222 01 13668999999988421 123577788888999999998742
Q ss_pred -------------CCCCCCeeEecc--------------cCCCCCcceEEEecccCCCCCccccc-----CCCCCCEEEE
Q 045113 672 -------------KMPRLSKIILAE--------------YVFPHSLTHLSFSNTDLMDDPMPALE-----KLPLLQVLKL 719 (821)
Q Consensus 672 -------------~~~~L~~l~l~~--------------~~~~~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L~L 719 (821)
.+++|+.|.+++ +..+++|+.|++++|.+.+..+..+. ..++|+.|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 356788887765 22367888888888876543333333 2368888888
Q ss_pred eccccCCCe---eeecCCCCcccceeeeccCCCccce-eeccc-----cccccceeEEeecCCCC----CCccccCCCCC
Q 045113 720 KQNSYSGRK---LTCGSDGFPRLKVLHLKSMLWLEEW-TMGTG-----AMPKLECLIINPCAYLK----KMPEQLWCIKS 786 (821)
Q Consensus 720 ~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~-----~l~~L~~L~i~~c~~l~----~lp~~l~~l~~ 786 (821)
++|.+.+.. +......+++|++|++++|. +... +..+. .+++|++|++++|.... .+|..+..+++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 877765542 12223456889999999884 4432 11111 26799999999996443 67888888999
Q ss_pred CCEEEEeCCc
Q 045113 787 LNNFNCWWPQ 796 (821)
Q Consensus 787 L~~L~l~~c~ 796 (821)
|++|++++|+
T Consensus 400 L~~L~l~~N~ 409 (461)
T 1z7x_W 400 LRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSS
T ss_pred ccEEECCCCC
Confidence 9999999987
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=9e-19 Score=206.35 Aligned_cols=299 Identities=19% Similarity=0.178 Sum_probs=207.1
Q ss_pred CCCceeEEEEEcCCCccccc--C-CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccc-cccCCCC
Q 045113 467 RKNVKRFFALEQQSDFAYLD--D-YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPS-EIENLSL 542 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~--~-~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~ 542 (821)
.-...++|.+..+.....+. . .+++|++|.+.++.... .+...|.++++|++|+|++|.++.+|+ .++++++
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 45678999998887665433 2 79999999999987653 566789999999999999999998875 5899999
Q ss_pred ceEEeecCCCCc--cccHHHHhccccceEEecCCcccccch-hhhccCcc------------------------------
Q 045113 543 LRYLKLNIPSLK--SLPLSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKK------------------------------ 589 (821)
Q Consensus 543 Lr~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~------------------------------ 589 (821)
|++|++++|.+. .+|..+. .+++|++|++++|.+..++ ..+..+.+
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 999999999987 4677888 9999999999998766552 22222111
Q ss_pred --------------------------------------------------------------------------------
Q 045113 590 -------------------------------------------------------------------------------- 589 (821)
Q Consensus 590 -------------------------------------------------------------------------------- 589 (821)
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence
Q ss_pred ---------------------CceeecCCcccCCCC-------------------CCCcCCCCCcceeccccCC-----c
Q 045113 590 ---------------------LRHLNFGSITLPAHP-------------------GNYCGSLENLNFISALYPC-----C 624 (821)
Q Consensus 590 ---------------------L~~L~L~~~~~~~~~-------------------p~~i~~l~~L~~L~~~~~~-----~ 624 (821)
|++|++.+|.+.... +.....+++|+.|++..+. .
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 112222222111000 0112346677777776531 1
Q ss_pred chhh----------------------hcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC----------C
Q 045113 625 CTKD----------------------LLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES----------K 672 (821)
Q Consensus 625 ~~~~----------------------~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~----------~ 672 (821)
.+.. .+..+++|+.+++..+.. ....-+..+..+++++.++++.|. .
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~-~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEE-ESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhccc-ccccccccccccccccccccccccccccccccccc
Confidence 1112 023344444444443310 000111234566777888877642 4
Q ss_pred CCCCCeeEecc-----------cCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccce
Q 045113 673 MPRLSKIILAE-----------YVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKV 741 (821)
Q Consensus 673 ~~~L~~l~l~~-----------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 741 (821)
.+.++.+.+.+ +..+++|+.|+|++|.+++..+..++++++|+.|+|++|.+.+.. +..+.++++|+.
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~ 546 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQV 546 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCTTCCE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCCCCCE
Confidence 56777777765 667899999999999998888889999999999999999887643 344678999999
Q ss_pred eeeccCCCccce-eeccccc-cccceeEEeecCC
Q 045113 742 LHLKSMLWLEEW-TMGTGAM-PKLECLIINPCAY 773 (821)
Q Consensus 742 L~L~~~~~l~~~-~~~~~~l-~~L~~L~i~~c~~ 773 (821)
|+|++|. +..+ +..+..+ ++|+.|++++||.
T Consensus 547 L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 547 LDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred EECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 9999985 5544 5556677 5899999999874
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=197.62 Aligned_cols=239 Identities=19% Similarity=0.170 Sum_probs=108.8
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCcccc-HHHHhccccceEEecCCcccccch-hhhccCccCceeecCCc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSI 598 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~ 598 (821)
+.++.++..++.+|..+. .++++|+|++|.+..++ ..+. ++++|++|+|++|.+..++ ..+.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 344555555555554433 34555555555555443 2333 5555555555555555443 34455555555555555
Q ss_pred ccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCC
Q 045113 599 TLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 676 (821)
Q Consensus 599 ~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L 676 (821)
.+....+..+..+++|++|++..| ...+...+.++++|+.|+++++. .+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-----------------------------~l 173 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-----------------------------RL 173 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------------TC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-----------------------------Cc
Confidence 553322233444444444444432 11122125556666666665541 11
Q ss_pred CeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce-ee
Q 045113 677 SKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW-TM 755 (821)
Q Consensus 677 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~ 755 (821)
..+....+..+++|+.|+|++|.++. .+.+..+++|+.|+|++|.+.+. .+..+.++++|+.|+|++| .+..+ +.
T Consensus 174 ~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 249 (440)
T 3zyj_A 174 SYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQS-QIQVIERN 249 (440)
T ss_dssp CEECTTTTTTCSSCCEEECTTSCCSS--CCCCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTC-CCCEECTT
T ss_pred ceeCcchhhcccccCeecCCCCcCcc--ccccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCC-ceeEEChh
Confidence 11111123334444444444444432 22344555555555554444331 1222344555555555554 23333 22
Q ss_pred ccccccccceeEEeecCCCCCCc-cccCCCCCCCEEEEeCCc
Q 045113 756 GTGAMPKLECLIINPCAYLKKMP-EQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 756 ~~~~l~~L~~L~i~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 796 (821)
.+..+++|+.|++++|. ++.+| ..+..+++|+.|+++++|
T Consensus 250 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 34455555555555553 22333 234555555666555533
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.7e-18 Score=194.66 Aligned_cols=288 Identities=18% Similarity=0.136 Sum_probs=189.3
Q ss_pred CCceeEEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEe
Q 045113 468 KNVKRFFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLK 547 (821)
Q Consensus 468 ~~~~r~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~ 547 (821)
....+.+.+..+...... ...++|++|.+.++.... .+ .|..+++|++|++++|.++.+|..+ .+|++|+
T Consensus 110 ~~~L~~L~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~----lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~ 179 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEK----LP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIA 179 (454)
T ss_dssp CTTCCEEECCSSCCSCCC-SCCTTCCEEECCSSCCSS----CC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEE
T ss_pred cCCCcEEECCCCccCccc-CCCCCCCEEECcCCCCCC----Cc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEEE
Confidence 356788888766543321 123689999999887653 32 3888999999999999988887654 4899999
Q ss_pred ecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-cch
Q 045113 548 LNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-CCT 626 (821)
Q Consensus 548 L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~ 626 (821)
+++|.+..+| .+. ++++|++|++++|.+..+|... ++|++|++++|.+. .+|. ++.+++|++|++..|. ..+
T Consensus 180 L~~n~l~~l~-~~~-~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 180 AGNNQLEELP-ELQ-NLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CCSSCCSSCC-CCT-TCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSC
T ss_pred CcCCcCCcCc-ccc-CCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcc
Confidence 9999998888 677 8999999999999888777533 58999999999885 6774 8899999999988742 112
Q ss_pred hhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC------CCCCCCeeEecc-----cCCC-CCcceEE
Q 045113 627 KDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES------KMPRLSKIILAE-----YVFP-HSLTHLS 694 (821)
Q Consensus 627 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~------~~~~L~~l~l~~-----~~~~-~~L~~L~ 694 (821)
+. .+++|+.|++++|. ...+|. ..++|+.|++++|. .+++|+.|.+++ +..+ ++|+.|+
T Consensus 253 ~~---~~~~L~~L~l~~N~---l~~l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~ 323 (454)
T 1jl5_A 253 PD---LPPSLEALNVRDNY---LTDLPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 323 (454)
T ss_dssp CS---CCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEE
T ss_pred cc---cccccCEEECCCCc---ccccCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEE
Confidence 22 24788899988873 112222 23678888888752 235788887766 2233 6999999
Q ss_pred EecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcc--ceeeccccc------------
Q 045113 695 FSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLE--EWTMGTGAM------------ 760 (821)
Q Consensus 695 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~~~~~~~~l------------ 760 (821)
+++|.+++ .+.. +++|+.|++++|.+... +. .+++|++|++++|+... .+|..++.+
T Consensus 324 Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l--p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 324 VSNNKLIE-LPAL---PPRLERLIASFNHLAEV--PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred CCCCcccc-cccc---CCcCCEEECCCCccccc--cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence 99999875 3433 68999999998887752 22 57899999999986444 456666666
Q ss_pred -cccceeEEeecCCCC--CCccccCCCCCCCEEEEeCCc
Q 045113 761 -PKLECLIINPCAYLK--KMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 761 -~~L~~L~i~~c~~l~--~lp~~l~~l~~L~~L~l~~c~ 796 (821)
++|+.|++++|+... .+|. +|+.|.+.+|.
T Consensus 395 ~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 395 PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp ---------------------------------------
T ss_pred cCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence 899999999998654 5554 34555555543
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1e-18 Score=197.02 Aligned_cols=226 Identities=22% Similarity=0.223 Sum_probs=142.2
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 566 (821)
-.++++.|.+.++.... ..+..|..+++|++|+|++|.++.++ ..+.++++|++|+|++|.+..+|......+++
T Consensus 73 ~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 34567777777766542 44456677777777777777776544 56677777777777777777666553326777
Q ss_pred ceEEecCCcccccchh-hhccCccCceeecCCcccCCCCCC-CcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEec
Q 045113 567 LYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPAHPGN-YCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~-~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~ 643 (821)
|++|+|++|.+..+|. .+.++++|++|++++|...+.++. .+..+++|+.|++..| -..+.. +..+++|+.|++++
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSG 227 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTT
T ss_pred CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcC
Confidence 7777777777776654 566777777777776554454443 3666777777776663 222334 66666777777766
Q ss_pred ccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccc
Q 045113 644 DLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNS 723 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 723 (821)
| ...+..+..+..+++|+.|++++| .+..+....+..+++|+.|+|++|.++...+..+..+++|+.|+|++|.
T Consensus 228 N--~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 228 N--HFPEIRPGSFHGLSSLKKLWVMNS----QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp S--CCSEECGGGGTTCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred C--cCcccCcccccCccCCCEEEeCCC----cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6 233333455666666666666543 4555544445566666666666666665555556666666666666654
Q ss_pred c
Q 045113 724 Y 724 (821)
Q Consensus 724 ~ 724 (821)
+
T Consensus 302 ~ 302 (452)
T 3zyi_A 302 W 302 (452)
T ss_dssp E
T ss_pred c
Confidence 3
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=196.52 Aligned_cols=224 Identities=19% Similarity=0.226 Sum_probs=134.4
Q ss_pred CCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHH-HHhcccc
Q 045113 489 YPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLS-FFNYLLN 566 (821)
Q Consensus 489 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~~ 566 (821)
.++++.|.+.++.... .....|..+++|++|+|++|.++.++ ..+.++++|++|+|++|.+..+|.. +. .+++
T Consensus 63 ~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~ 137 (440)
T 3zyj_A 63 STNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV-YLSK 137 (440)
T ss_dssp CTTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC-SCSS
T ss_pred CCCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh-cccc
Confidence 4566666666665542 33455666777777777777766444 4566677777777777776666653 44 6677
Q ss_pred ceEEecCCcccccchh-hhccCccCceeecCCcccCCCCCC-CcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEec
Q 045113 567 LYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPAHPGN-YCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~-~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~ 643 (821)
|++|++++|.+..+|. .+.++++|++|++++|.....++. .+..+++|++|++..| -..++. +..+++|+.|++++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSG 216 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTT
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCC
Confidence 7777777776666644 556677777777766544444443 4566666666666663 223334 56666666666666
Q ss_pred ccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccc
Q 045113 644 DLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNS 723 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 723 (821)
|. .....+..+..+++|+.|+++.| .++.+....+..+++|+.|+|++|.++...+..+..+++|+.|+|++|.
T Consensus 217 N~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 217 NH--LSAIRPGSFQGLMHLQKLWMIQS----QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SC--CCEECTTTTTTCTTCCEEECTTC----CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred Cc--cCccChhhhccCccCCEEECCCC----ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 52 22233445556666666666543 4555544445566666666666666655555555666666666666554
Q ss_pred c
Q 045113 724 Y 724 (821)
Q Consensus 724 ~ 724 (821)
+
T Consensus 291 ~ 291 (440)
T 3zyj_A 291 W 291 (440)
T ss_dssp E
T ss_pred c
Confidence 3
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.7e-19 Score=210.94 Aligned_cols=305 Identities=15% Similarity=0.072 Sum_probs=193.4
Q ss_pred CCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCC----ccccHHHHhcc
Q 045113 489 YPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSL----KSLPLSFFNYL 564 (821)
Q Consensus 489 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i----~~lp~~i~~~L 564 (821)
+++|++|.+.++.........+...+..+++|+.|+|++|.+..+|..+.++++|++|+++.... ...+..+. .+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-FP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-CC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh-cc
Confidence 44444444443333211112333344444444444444444444444444444444444443211 12223333 44
Q ss_pred ccceEEecCCcccccchhhhccCccCceeecCCcccCCCCC-CCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEE
Q 045113 565 LNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPG-NYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRI 641 (821)
Q Consensus 565 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p-~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l 641 (821)
++|+.|+++++....+|..+..+++|++|++++|.+..... ..+..+++|++|++..+ ...+......+++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 45555555555455677778889999999999998644322 34688999999998752 2333342567899999999
Q ss_pred ec----------ccccchhHHHHHccCCCCcCEEEeecCC-----------CCCCCCeeEecc-----------------
Q 045113 642 QG----------DLSYNQSLLSKSLCRLSCLESLKLANES-----------KMPRLSKIILAE----------------- 683 (821)
Q Consensus 642 ~~----------~~~~~~~~l~~~l~~~~~L~~L~l~~~~-----------~~~~L~~l~l~~----------------- 683 (821)
++ +.......++.....+++|++|+++.+. .+++|+.|.+.+
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 94 4323444555556678999999996632 378999999962
Q ss_pred --cCCCCCcceEEEeccc--CCCCCccccc-CCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccc--eeec
Q 045113 684 --YVFPHSLTHLSFSNTD--LMDDPMPALE-KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEE--WTMG 756 (821)
Q Consensus 684 --~~~~~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~~~ 756 (821)
+..+++|+.|++++|. +++..+..++ .+++|+.|+|++|.+++..+.....++++|++|+|++|+ +.. ++..
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH
Confidence 2348999999998764 5555555554 589999999998887765544445778999999999997 442 3334
Q ss_pred cccccccceeEEeecCCCCC-CccccCCCCCCCEEEEeCC
Q 045113 757 TGAMPKLECLIINPCAYLKK-MPEQLWCIKSLNNFNCWWP 795 (821)
Q Consensus 757 ~~~l~~L~~L~i~~c~~l~~-lp~~l~~l~~L~~L~l~~c 795 (821)
...+|+|+.|++++|..... +......+|.|....+...
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 45799999999999984332 2222346777777766654
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=3.3e-19 Score=188.04 Aligned_cols=247 Identities=20% Similarity=0.187 Sum_probs=175.5
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCC-Cccc-cHHHHhcc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPS-LKSL-PLSFFNYL 564 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~-i~~l-p~~i~~~L 564 (821)
-.++++.|.+.++.... .....|..+++|++|+|++|.++.+ |..+.++++|++|++++|. +..+ |..+. .+
T Consensus 30 ~~~~l~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~-~l 104 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH-GL 104 (285)
T ss_dssp CCTTCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT-TC
T ss_pred CCCCceEEEeeCCcCCc----cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc-CC
Confidence 56799999999988753 5556789999999999999999966 6789999999999999997 8877 56677 99
Q ss_pred ccceEEecCCcccccc-hhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEE
Q 045113 565 LNLYTLDMPFSYIDHT-ADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRI 641 (821)
Q Consensus 565 ~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l 641 (821)
++|++|++++|.+..+ |..+.++++|++|++++|.+....+..++.+++|++|++..| ...+.
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------- 170 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-------------- 170 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--------------
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH--------------
Confidence 9999999999998888 567889999999999999986544444666666666665542 11111
Q ss_pred ecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEec
Q 045113 642 QGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQ 721 (821)
Q Consensus 642 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 721 (821)
..+..+++|+.|++++| .+..+....+..+++|+.|++++|.+++..+..+..+++|+.|+|++
T Consensus 171 ------------~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 171 ------------RAFRGLHSLDRLLLHQN----RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp ------------TTTTTCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ------------HHhcCccccCEEECCCC----cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 12444555555555543 45555445566788899999999998876667789999999999998
Q ss_pred cccCCCeeeecCCCCcccceeeeccCCCccceeecc--ccccccceeEEeec
Q 045113 722 NSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGT--GAMPKLECLIINPC 771 (821)
Q Consensus 722 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~--~~l~~L~~L~i~~c 771 (821)
|.+....... .....|+.+....+......|... ..+..++..++.+|
T Consensus 235 N~~~c~~~~~--~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 235 NPWVCDCRAR--PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SCEECSGGGH--HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCccCCCCcH--HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 8775432110 011234444444433222344332 23556666666666
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=4.2e-20 Score=198.05 Aligned_cols=265 Identities=17% Similarity=0.118 Sum_probs=205.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.+++|+.|.+.++.... ..+..|..+++|++|+|++|.++..++ +..+++|++|++++|.+..+| .+++|
T Consensus 32 ~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L 101 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (317)
T ss_dssp TGGGCSEEECTTSCCCC----CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred cCCCCCEEECcCCccCc----CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence 56799999999988754 566788999999999999999987665 999999999999999998777 56899
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC---CcchhhhcCCCCCCCeEEEecc
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP---CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~---~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
++|++++|.+..++.. .+++|++|++++|.+....|..++.+++|++|++..| ...+......+++|+.|++++|
T Consensus 102 ~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 9999999999888653 4789999999999997766778899999999999985 2334442357899999999998
Q ss_pred cccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEecccc
Q 045113 645 LSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSY 724 (821)
Q Consensus 645 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 724 (821)
. ...++ ....+++|+.|++++| .++.+... +..+++|+.|+|++|.++ ..+..+..+++|+.|++++|.+
T Consensus 180 ~---l~~~~-~~~~l~~L~~L~Ls~N----~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 180 F---IYDVK-GQVVFAKLKTLDLSSN----KLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp C---CCEEE-CCCCCTTCCEEECCSS----CCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred c---Ccccc-cccccccCCEEECCCC----cCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 4 22222 3345889999999875 66665433 678899999999999987 5677889999999999999988
Q ss_pred CCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCC
Q 045113 725 SGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYL 774 (821)
Q Consensus 725 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l 774 (821)
....++.....+++|+.|++.+++.+..........+.+....-..|..+
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCC
T ss_pred cCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccC
Confidence 74344445677899999999977666544333333333333333345444
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2e-18 Score=200.10 Aligned_cols=236 Identities=17% Similarity=0.033 Sum_probs=160.2
Q ss_pred CCCceeEEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEE
Q 045113 467 RKNVKRFFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYL 546 (821)
Q Consensus 467 ~~~~~r~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L 546 (821)
.+..++.|.+.++....++. .+++|++|.+.++.... ++. .+++|++|+|++|.++.+|. .+++|++|
T Consensus 59 l~~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~----lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS----LPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC----CCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred hCCCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc----CCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 34679999999887664433 78999999999988653 222 78999999999999999887 67899999
Q ss_pred eecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-cc
Q 045113 547 KLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-CC 625 (821)
Q Consensus 547 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~ 625 (821)
++++|.+..+|.. +++|++|++++|.+..+|. .+++|+.|++++|.+. .+| ..+++|+.|++..|. ..
T Consensus 127 ~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 127 WIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred ECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC
Confidence 9999999999853 5899999999999998876 4578999999999984 466 456778888877742 11
Q ss_pred hhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCc
Q 045113 626 TKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPM 705 (821)
Q Consensus 626 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~ 705 (821)
++. .+++|+.|++++|. ...+| ..+++|+.|++++| .++.+. ..+++|+.|+|++|.++. +|
T Consensus 196 l~~---~~~~L~~L~L~~N~---l~~l~---~~~~~L~~L~Ls~N----~L~~lp----~~l~~L~~L~Ls~N~L~~-lp 257 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNR---LTSLP---ALPSGLKELIVSGN----RLTSLP----VLPSELKELMVSGNRLTS-LP 257 (622)
T ss_dssp CCC---CCTTCCEEECCSSC---CSSCC---CCCTTCCEEECCSS----CCSCCC----CCCTTCCEEECCSSCCSC-CC
T ss_pred CCC---ccchhhEEECcCCc---ccccC---CCCCCCCEEEccCC----ccCcCC----CCCCcCcEEECCCCCCCc-CC
Confidence 111 24667777777763 11222 12355666666543 333321 234566666666665542 22
Q ss_pred ccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCC
Q 045113 706 PALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 706 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 748 (821)
. .+++|+.|+|++|.+.. ++.....+++|+.|+|++|+
T Consensus 258 ~---~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp C---CCTTCCEEECCSSCCCS--CCGGGGGSCTTCEEECCSCC
T ss_pred c---ccccCcEEeCCCCCCCc--CCHHHhhccccCEEEecCCC
Confidence 2 45566666666555542 22334555666666666654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.8e-19 Score=204.51 Aligned_cols=235 Identities=15% Similarity=0.083 Sum_probs=170.8
Q ss_pred ccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCcee
Q 045113 515 EMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHL 593 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 593 (821)
..+++|+.|+|++|.++.++ ..++++++|++|+|++|.+...++ +. .+++|++|+|++|.+..+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~-~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE-SLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CT-TCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cc-cCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 34457888888888887554 577888888888888888775554 66 78888888888887777653 3778888
Q ss_pred ecCCcccCCCCCCCcCCCCCcceeccccC--Cc-chhhhcCCCCCCCeEEEecccccchhHHHHHcc-CCCCcCEEEeec
Q 045113 594 NFGSITLPAHPGNYCGSLENLNFISALYP--CC-CTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLC-RLSCLESLKLAN 669 (821)
Q Consensus 594 ~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~l~~ 669 (821)
++++|.+.+..+. .+++|++|++..| .. .+.. ++.+++|+.|++++|. ..+..|..+. .+++|+.|++++
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTT
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecCC
Confidence 8888887554433 3567788887774 22 2334 6778888888888873 3333445554 678888888886
Q ss_pred CCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCC
Q 045113 670 ESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLW 749 (821)
Q Consensus 670 ~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 749 (821)
| .+..+ .+...+++|+.|+|++|.+++ .++.++.+++|+.|+|++|.+.+ ++.....+++|+.|++++|+.
T Consensus 179 N----~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 179 N----FIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp S----CCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCB
T ss_pred C----ccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCC
Confidence 5 55555 234468999999999999875 45568899999999999888875 444467789999999999865
Q ss_pred c-cceeeccccccccceeEEee
Q 045113 750 L-EEWTMGTGAMPKLECLIINP 770 (821)
Q Consensus 750 l-~~~~~~~~~l~~L~~L~i~~ 770 (821)
. ..++..+..++.|+.|.+..
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEeccc
Confidence 4 25555677888888888863
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1.2e-19 Score=194.05 Aligned_cols=246 Identities=16% Similarity=0.137 Sum_probs=137.6
Q ss_pred hhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCc--cccHHHH------hccccceEEecCCcccc-cchhh
Q 045113 513 ICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLK--SLPLSFF------NYLLNLYTLDMPFSYID-HTADE 583 (821)
Q Consensus 513 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~------~~L~~L~~L~L~~~~l~-~lp~~ 583 (821)
++...+.|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. .++++|++|++++|.+. .+|..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 345556677777777776 666655543 667777776664 3454331 03667777777777665 45665
Q ss_pred h--ccCccCceeecCCcccCCCCCCCcCCC-----CCcceeccccC--Ccch-hhhcCCCCCCCeEEEecccccchhH--
Q 045113 584 F--WKMKKLRHLNFGSITLPAHPGNYCGSL-----ENLNFISALYP--CCCT-KDLLGRLPNLRNLRIQGDLSYNQSL-- 651 (821)
Q Consensus 584 i--~~l~~L~~L~L~~~~~~~~~p~~i~~l-----~~L~~L~~~~~--~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-- 651 (821)
+ ..+++|++|++++|.+.+. |..++.+ ++|++|++.+| ...+ .. ++.+++|+.|++++|. ..+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~ 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNP--ELGERG 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSCT--TCHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCCC--cCcchH
Confidence 4 6677777777777776544 5555544 56666666553 2222 33 5566666666666652 1221
Q ss_pred HHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCC--CCc-ccccCCCCCCEEEEeccccCCCe
Q 045113 652 LSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMD--DPM-PALEKLPLLQVLKLKQNSYSGRK 728 (821)
Q Consensus 652 l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~--~~~-~~l~~l~~L~~L~L~~~~~~~~~ 728 (821)
++..+. +..+++|+.|+|++|.++. ..+ ..+..+++|+.|+|++|.+.+..
T Consensus 191 ~~~~~~--------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 191 LISALC--------------------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp HHHHSC--------------------------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HHHHHH--------------------------hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 233330 1334555555555555442 111 12245566666666666655533
Q ss_pred eeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 729 LTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 729 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
.......+++|++|++++| .+..+|.... ++|+.|++++|. ++.+|. +..+++|++|++++++
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred chhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 2222344566777777665 3455554443 667777777664 444555 6667777777776665
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1e-18 Score=204.30 Aligned_cols=323 Identities=14% Similarity=0.074 Sum_probs=205.7
Q ss_pred CceeEEEEEcCCCccc--ccC--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCc-----ccccccC
Q 045113 469 NVKRFFALEQQSDFAY--LDD--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQ-----YPSEIEN 539 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~--~~~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-----lp~~i~~ 539 (821)
..++++.+..+..... ... .+++|++|.+.++.... ...+..++..+++|++|+|++|.++. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4677888887653221 111 58899999998874321 23456677789999999999998652 3343447
Q ss_pred CCCceEEeecCCC--Cc--cccHHHHhccccceEEecCCc-ccccchhhhccCccCceeecCCccc--------------
Q 045113 540 LSLLRYLKLNIPS--LK--SLPLSFFNYLLNLYTLDMPFS-YIDHTADEFWKMKKLRHLNFGSITL-------------- 600 (821)
Q Consensus 540 l~~Lr~L~L~~~~--i~--~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~~~~-------------- 600 (821)
+++|++|++++|. +. .++..+. ++++|++|++++| .+..+|..+.++++|++|+++++..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~-~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVT-RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHH-HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHH-hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 7899999999986 32 3433344 7899999999998 6777888888899999998765521
Q ss_pred ------------C----CCCCCCcCCCCCcceeccccCC---cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCC
Q 045113 601 ------------P----AHPGNYCGSLENLNFISALYPC---CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSC 661 (821)
Q Consensus 601 ------------~----~~~p~~i~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~ 661 (821)
. ..++..+..+++|++|++..+. ..+...+.++++|+.|++.++ .....++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCC
Confidence 0 1122222355677777776632 222333567788888888776 333444444455777
Q ss_pred cCEEEeec----------CC----------CCCCCCeeEecc-----------cCCCCCcceEEEe--c----ccCCCCC
Q 045113 662 LESLKLAN----------ES----------KMPRLSKIILAE-----------YVFPHSLTHLSFS--N----TDLMDDP 704 (821)
Q Consensus 662 L~~L~l~~----------~~----------~~~~L~~l~l~~-----------~~~~~~L~~L~L~--~----~~l~~~~ 704 (821)
|+.|+++. .+ .+++|+.|.+.. ...+++|+.|+++ + +.+++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 88887732 11 256777775543 1246777888877 2 2333211
Q ss_pred c-----ccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeec-cccccccceeEEeecCCCCC-C
Q 045113 705 M-----PALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMG-TGAMPKLECLIINPCAYLKK-M 777 (821)
Q Consensus 705 ~-----~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~i~~c~~l~~-l 777 (821)
. ..+..+++|+.|+|++ .+.+..+......+++|+.|+|++|......... ...+|+|+.|++++|+.... +
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 1 1245677788887764 3333222221223788999999988532222222 25689999999999987322 2
Q ss_pred ccccCCCCCCCEEEEeCCcH
Q 045113 778 PEQLWCIKSLNNFNCWWPQP 797 (821)
Q Consensus 778 p~~l~~l~~L~~L~l~~c~~ 797 (821)
+..+.++++|+.|++++|+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhCCCCCEEeeeCCCC
Confidence 23456789999999999983
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.9e-19 Score=201.75 Aligned_cols=240 Identities=13% Similarity=0.084 Sum_probs=159.6
Q ss_pred cccccccCCC----CceEEeecCCCCcccc-HHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCC
Q 045113 532 QYPSEIENLS----LLRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGN 606 (821)
Q Consensus 532 ~lp~~i~~l~----~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~ 606 (821)
.+|..+..+. +|++|+|++|.+..+| ..+. .+++|++|+|++|.+..+++ +..+++|++|++++|.+.+ +|
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~- 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL- 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC-
Confidence 4555555444 8999999999999775 5677 99999999999998887765 8999999999999998843 32
Q ss_pred CcCCCCCcceeccccCC--cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEeccc
Q 045113 607 YCGSLENLNFISALYPC--CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEY 684 (821)
Q Consensus 607 ~i~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~ 684 (821)
..++|++|++..|. ..+ ...+++|+.|++++|. ..+..|..+..+++|+.|++++| .+....+..+
T Consensus 97 ---~~~~L~~L~L~~N~l~~~~---~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~l 164 (487)
T 3oja_A 97 ---VGPSIETLHAANNNISRVS---CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLN----EIDTVNFAEL 164 (487)
T ss_dssp ---ECTTCCEEECCSSCCCCEE---ECCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTS----CCCEEEGGGG
T ss_pred ---CCCCcCEEECcCCcCCCCC---ccccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCC----CCCCcChHHH
Confidence 33788888887742 222 2346778888888772 33333445566677777777654 5555555444
Q ss_pred C-CCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeecccccccc
Q 045113 685 V-FPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKL 763 (821)
Q Consensus 685 ~-~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L 763 (821)
. .+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+.+. +..+..+++|+.|+|++| .+..+|..+..+++|
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNL 239 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTC
T ss_pred hhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC-cCcccchhhccCCCC
Confidence 3 567777777777766532 3344567777777776666542 222455667777777775 455566666666777
Q ss_pred ceeEEeecCCC-CCCccccCCCCCCCEEEE
Q 045113 764 ECLIINPCAYL-KKMPEQLWCIKSLNNFNC 792 (821)
Q Consensus 764 ~~L~i~~c~~l-~~lp~~l~~l~~L~~L~l 792 (821)
+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 77777776654 244555555555555544
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1e-18 Score=186.83 Aligned_cols=240 Identities=18% Similarity=0.160 Sum_probs=149.8
Q ss_pred CCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC--ccccccc-------CCCCceEEeecCCCCc-cccH
Q 045113 489 YPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN--QYPSEIE-------NLSLLRYLKLNIPSLK-SLPL 558 (821)
Q Consensus 489 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~-------~l~~Lr~L~L~~~~i~-~lp~ 558 (821)
.++|+.|.+.++.. . .+..+... |+.|+|+++.+. .+|..+. ++++|++|++++|.+. .+|.
T Consensus 42 ~~~L~~l~l~~n~l-~----~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-A----DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEECTTHHHHCCTT-C----CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCCceeEeeccccc-c----cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455555555544 2 23333322 778888888875 4666555 7888888888888887 6777
Q ss_pred HH--HhccccceEEecCCcccccchhhhccC-----ccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-c----ch
Q 045113 559 SF--FNYLLNLYTLDMPFSYIDHTADEFWKM-----KKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-C----CT 626 (821)
Q Consensus 559 ~i--~~~L~~L~~L~L~~~~l~~lp~~i~~l-----~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~----~~ 626 (821)
.+ . .+++|++|++++|.+..+|..+..+ ++|++|++++|.+.+..|..++.+++|++|++.+|. . .+
T Consensus 114 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEA-TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSC-CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHh-cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 6 8888888888888888777777776 888889888888876666788888888888888853 1 23
Q ss_pred hhhc--CCCCCCCeEEEecccccchhHHHHH-ccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCC
Q 045113 627 KDLL--GRLPNLRNLRIQGDLSYNQSLLSKS-LCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDD 703 (821)
Q Consensus 627 ~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~ 703 (821)
.. + +.+++|+.|++++|.-.....++.. +..+++|+.|++++ |.+.+.
T Consensus 193 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~----------------------------N~l~~~ 243 (312)
T 1wwl_A 193 SA-LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH----------------------------NSLRDA 243 (312)
T ss_dssp HH-SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT----------------------------SCCCSS
T ss_pred HH-HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC----------------------------CcCCcc
Confidence 34 4 8899999999999842222344433 34556666666654 443332
Q ss_pred Cc-ccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEeecC
Q 045113 704 PM-PALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINPCA 772 (821)
Q Consensus 704 ~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~c~ 772 (821)
.+ +.+..+++|+.|+|++|.+.. ++... +++|++|++++| .+..+|. +..+++|+.|++++|+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 21 233344555555555444441 11111 145555555554 3444443 4555555555555554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2.7e-17 Score=171.95 Aligned_cols=207 Identities=20% Similarity=0.222 Sum_probs=108.9
Q ss_pred ccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhh-hccCccCcee
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHL 593 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L 593 (821)
..++.|+.|+++++.++.++. +..+++|++|++++|.+..++ .+. .+++|++|++++|.+..+|.. +.++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 456677777777777665543 666777777777777776654 555 677777777777776666543 5667777777
Q ss_pred ecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 594 NFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 594 ~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
++++|.+.+..+..++.+++|++ |++++|. .....+..+..+++|+.|++++|
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~----------------------L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n--- 167 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTY----------------------LNLAHNQ--LQSLPKGVFDKLTNLTELDLSYN--- 167 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCE----------------------EECCSSC--CCCCCTTTTTTCTTCCEEECCSS---
T ss_pred ECCCCcCCccCHHHhccCCCCCE----------------------EECCCCc--cCccCHHHhccCccCCEEECCCC---
Confidence 77777764433333344444444 4444331 00000111222233333333221
Q ss_pred CCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce
Q 045113 674 PRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW 753 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 753 (821)
.+..+....+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+ .+++|+.|.++.+.....+
T Consensus 168 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 168 -QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGB
T ss_pred -CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcc
Confidence 1222211223345555566666666555444455566666666666554432 3445555555554433344
Q ss_pred eeccccc
Q 045113 754 TMGTGAM 760 (821)
Q Consensus 754 ~~~~~~l 760 (821)
|...+.+
T Consensus 239 p~~~~~~ 245 (272)
T 3rfs_A 239 RNSAGSV 245 (272)
T ss_dssp BCTTSCB
T ss_pred cCccccc
Confidence 4444433
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=8.9e-19 Score=204.86 Aligned_cols=302 Identities=13% Similarity=0.056 Sum_probs=207.2
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCC-CCCc--ccccccCCCCceEEeecCCCCcc-----ccHH
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSL-VLNQ--YPSEIENLSLLRYLKLNIPSLKS-----LPLS 559 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~-~l~~--lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~ 559 (821)
.+++|++|.+.++... ...+..+...+++|++|+|++| .++. ++..+.++++|++|++++|.+.. ++..
T Consensus 103 ~~~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVT---DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCC---HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEc---HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 5889999999988754 3344444457999999999999 4653 56656689999999999998653 3333
Q ss_pred HHhccccceEEecCCcc--c--ccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceecccc--------------
Q 045113 560 FFNYLLNLYTLDMPFSY--I--DHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALY-------------- 621 (821)
Q Consensus 560 i~~~L~~L~~L~L~~~~--l--~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~-------------- 621 (821)
.. .+++|++|++++|. + ..++..+.++++|++|++++|.....+|..+..+++|+.|++..
T Consensus 180 ~~-~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 180 PD-TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp CT-TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hh-cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 33 67799999999986 2 22333445689999999998843333555555666666665321
Q ss_pred ------------------CCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC----------CC
Q 045113 622 ------------------PCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES----------KM 673 (821)
Q Consensus 622 ------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~----------~~ 673 (821)
....+...+..+++|+.|++++|. .....+...+..+++|+.|++++++ .+
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC
Confidence 111122213467889999999885 3344455667889999999999753 47
Q ss_pred CCCCeeEecc--------------------cCCCCCcceEEEecccCCCCCccccc-CCCCCCEEEEe--c----cccCC
Q 045113 674 PRLSKIILAE--------------------YVFPHSLTHLSFSNTDLMDDPMPALE-KLPLLQVLKLK--Q----NSYSG 726 (821)
Q Consensus 674 ~~L~~l~l~~--------------------~~~~~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~--~----~~~~~ 726 (821)
++|+.|.+.+ ...+++|+.|.++++.+++..+..+. .+|+|+.|+++ + +.++.
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 8899998821 12478999998888887765555665 58999999998 2 23332
Q ss_pred C----eeeecCCCCcccceeeeccCCCccce-eeccc-cccccceeEEeecCCCCCCcccc-CCCCCCCEEEEeCCc
Q 045113 727 R----KLTCGSDGFPRLKVLHLKSMLWLEEW-TMGTG-AMPKLECLIINPCAYLKKMPEQL-WCIKSLNNFNCWWPQ 796 (821)
Q Consensus 727 ~----~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~-~l~~L~~L~i~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 796 (821)
. .+......+++|+.|++++ .+... ...++ .+++|+.|++++|......+..+ .++++|++|++++|+
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred CchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 1 1111134678999999976 33322 22233 48999999999997433222222 668999999999998
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.7e-18 Score=185.59 Aligned_cols=254 Identities=16% Similarity=0.119 Sum_probs=148.4
Q ss_pred CceEEEeecCCCCccchhhhHHhhccC--CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcc--ccHHHHhcccc
Q 045113 491 HLHSLLYFTSESDHLDHIDWQKICEMY--KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKS--LPLSFFNYLLN 566 (821)
Q Consensus 491 ~LrsL~l~~~~~~~~~~~~~~~~~~~~--~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~~L~~ 566 (821)
.++++.+.++... +..+..+ +.++.|+++++.+...+..+.++++|++|++++|.+.. +|..+. .+++
T Consensus 48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS-QCSK 119 (336)
T ss_dssp TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT-TBCC
T ss_pred hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh-hCCC
Confidence 3566666554432 2444455 67777777777766555556667777777777776652 665666 7777
Q ss_pred ceEEecCCcccc-cchhhhccCccCceeecCCc-ccCC-CCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEec
Q 045113 567 LYTLDMPFSYID-HTADEFWKMKKLRHLNFGSI-TLPA-HPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 567 L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~-~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 643 (821)
|++|++++|.+. ..|..+..+++|++|++++| .+.. .++.. +.++++|+.|++++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~----------------------~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL----------------------LSSCSRLDELNLSW 177 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH----------------------HHHCTTCCEEECCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH----------------------HhcCCCCCEEcCCC
Confidence 777777777655 34666667777777777776 3322 13332 44455556666655
Q ss_pred ccccchhHHHHHccCCC-CcCEEEeecCCCCC-CCCeeEe-cccCCCCCcceEEEeccc-CCCCCcccccCCCCCCEEEE
Q 045113 644 DLSYNQSLLSKSLCRLS-CLESLKLANESKMP-RLSKIIL-AEYVFPHSLTHLSFSNTD-LMDDPMPALEKLPLLQVLKL 719 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~~~-~L~~l~l-~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L 719 (821)
|.......++..+..++ +|++|+++++ . .+..-.+ ..+..+++|+.|++++|. +++..+..++++++|++|++
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~---~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGY---RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSC---GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCC---cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 52122233455555555 6666666532 1 1111000 013346677777777777 56666778888888888888
Q ss_pred eccc-cCCCeeeecCCCCcccceeeeccCCCccceeeccccc-cccceeEEeecCCCCCCccccC
Q 045113 720 KQNS-YSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAM-PKLECLIINPCAYLKKMPEQLW 782 (821)
Q Consensus 720 ~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l-~~L~~L~i~~c~~l~~lp~~l~ 782 (821)
++|. +....+ .....+++|+.|++++| +..- .+..+ .+|+.|++++|......|..++
T Consensus 255 ~~~~~~~~~~~-~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDIIPETL-LELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTCCGGGG-GGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCHHHH-HHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 8774 222211 12456888999999887 2211 12233 3477777876665555565444
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=4.2e-17 Score=173.69 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=104.4
Q ss_pred cCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeec
Q 045113 516 MYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNF 595 (821)
Q Consensus 516 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L 595 (821)
.+++|+.|++++|.++.+| .+..+++|++|++++|.+..++. +. .+++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~-~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LK-NLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT-TCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-Hc-cCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 3455556666665555554 35555566666666665555554 44 5566666666666555554 3555566666666
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCC
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 674 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 674 (821)
++|.+.. ++. +..+++|++|++..+ -..... +..+++|+.|++++|. ...++. +..+++|+.|++++|
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~n---- 183 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADDN---- 183 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSS----
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCCC----
Confidence 6555532 222 455555555555442 112222 4556666666666652 111222 555666666666543
Q ss_pred CCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 675 RLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 675 ~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
.+..+. .+..+++|+.|+|++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 184 ~l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 232221 1445667777777777765432 36777777777777766654
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.3e-16 Score=166.71 Aligned_cols=196 Identities=24% Similarity=0.230 Sum_probs=102.5
Q ss_pred ceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccchhhh-ccCccCceeecC
Q 045113 519 LLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTADEF-WKMKKLRHLNFG 596 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~ 596 (821)
.++.++++++.++.+|..+. .+|++|++++|.+..+|. .+. ++++|++|++++|.+..+|..+ .++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSS-SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhc-CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45566666666666665443 456666666666665554 344 6666666666666666665443 556666666666
Q ss_pred CcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCC
Q 045113 597 SITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 674 (821)
Q Consensus 597 ~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 674 (821)
+|.+....+..+..+++|++|++..+ ...+...+..+++|+.|+++++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------------ 143 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN------------------------------ 143 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC------------------------------
Confidence 66664333333444444554444442 1111111444555555555544
Q ss_pred CCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCC
Q 045113 675 RLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 675 ~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 748 (821)
.++.+....+..+++|+.|+|++|.+....+..+.++++|+.|+|++|.+.+.. ...+..+++|+.|+|++|+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCC
Confidence 122221111334555555555566555444444556666666666655554321 1223455666666666654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.4e-17 Score=172.38 Aligned_cols=230 Identities=20% Similarity=0.191 Sum_probs=172.7
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCC
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGS 597 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~ 597 (821)
..+..+++.++.+.... ....+.+|+.|+++++.+..++ .+. .+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~l~-~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQ-YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCT-TGG-GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHHhcCccccccc-ccccccceeeeeeCCCCccccc-ccc-cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 34445566666665442 3567888999999999988876 577 8999999999999888775 688999999999999
Q ss_pred cccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCC
Q 045113 598 ITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 677 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~ 677 (821)
|.+.+..+.. ++.+++|+.|++++|. .....+..+..+++|+.|++++| .+.
T Consensus 95 n~l~~~~~~~----------------------~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~ 146 (272)
T 3rfs_A 95 NQLQSLPNGV----------------------FDKLTNLKELVLVENQ--LQSLPDGVFDKLTNLTYLNLAHN----QLQ 146 (272)
T ss_dssp SCCCCCCTTT----------------------TTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCSS----CCC
T ss_pred CccCccChhH----------------------hcCCcCCCEEECCCCc--CCccCHHHhccCCCCCEEECCCC----ccC
Confidence 9885544443 4445555556665552 22222334678899999999865 566
Q ss_pred eeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeecc
Q 045113 678 KIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGT 757 (821)
Q Consensus 678 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 757 (821)
.+....+..+++|+.|++++|.+++..+..++.+++|+.|++++|.+.+.. +.....+++|+.|++++|+. .
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~-------~ 218 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPW-------D 218 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCB-------C
T ss_pred ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHhCCcCCCEEEccCCCc-------c
Confidence 555444678899999999999998776777899999999999998887643 33357789999999999852 2
Q ss_pred ccccccceeEEeecCCCCCCccccCCCCCC
Q 045113 758 GAMPKLECLIINPCAYLKKMPEQLWCIKSL 787 (821)
Q Consensus 758 ~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L 787 (821)
+.+|+|+.|.+..|.....+|..++.++..
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 568899999999888777888877766554
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=2.7e-16 Score=165.78 Aligned_cols=198 Identities=17% Similarity=0.139 Sum_probs=99.0
Q ss_pred ccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcccc-HHHHhccccceEEecCCcccccchhhhccCccCcee
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHL 593 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 593 (821)
.++++++.++++++.++.+|..+. ++|++|+|++|.+..++ ..+. .+++|++|++++|.+..+|.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 445555666666655555554443 45566666666555443 3344 556666666666655555443 455566666
Q ss_pred ecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCC
Q 045113 594 NFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES 671 (821)
Q Consensus 594 ~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 671 (821)
++++|.+ ..+|..+..+++|++|++..| ...+...+..+++|+.|++++|. .....+..+..+++|+.|+++.|
T Consensus 83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N- 158 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLANN- 158 (290)
T ss_dssp ECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS-
T ss_pred ECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCCC-
Confidence 6665555 344544555555555554442 12221225555555666555552 11111122334444555544432
Q ss_pred CCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEecccc
Q 045113 672 KMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSY 724 (821)
Q Consensus 672 ~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 724 (821)
.++.+....+..+++|+.|+|++|.++ .+|..+..+++|+.|.|++|.+
T Consensus 159 ---~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 ---NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ---CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ---cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 333332222344566666666666654 4445555555666666665544
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.4e-16 Score=166.99 Aligned_cols=214 Identities=19% Similarity=0.208 Sum_probs=100.4
Q ss_pred EEeCCCCCCcccccccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccchh-hhccCccCceeecCCccc
Q 045113 523 LDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITL 600 (821)
Q Consensus 523 L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~ 600 (821)
.+..+..+..+|..+. ++|++|++++|.+..++. .+. ++++|++|++++|.+..++. .+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTT-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhc-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3444444555555443 356666666666665554 444 66666666666666655543 456666666666666665
Q ss_pred CCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCe
Q 045113 601 PAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSK 678 (821)
Q Consensus 601 ~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~ 678 (821)
....+..+..+++|++|++..+ .......++.+++|+.|+++++ .+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------------------------~l~~ 138 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN------------------------------LIQS 138 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS------------------------------CCCC
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC------------------------------ccce
Confidence 4433333444334433333221 0000000333344444444333 1111
Q ss_pred eE-ecccCCCCCcceEEEecccCCCCCcccccCCCCCC----EEEEeccccCCCeeeecCCCCcccceeeeccCCCccce
Q 045113 679 II-LAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQ----VLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW 753 (821)
Q Consensus 679 l~-l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 753 (821)
+. ...+..+++|+.|++++|.+++..+..+..+++|+ .|++++|.+.+.. .......+|+.|++++| .+..+
T Consensus 139 ~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~--~~~~~~~~L~~L~L~~n-~l~~~ 215 (276)
T 2z62_A 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--PGAFKEIRLKELALDTN-QLKSV 215 (276)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC--TTSSCSCCEEEEECCSS-CCSCC
T ss_pred ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC--ccccCCCcccEEECCCC-ceeec
Confidence 11 11233455666666666665544444444444444 5555555443211 11112234555555554 24444
Q ss_pred eec-cccccccceeEEeecC
Q 045113 754 TMG-TGAMPKLECLIINPCA 772 (821)
Q Consensus 754 ~~~-~~~l~~L~~L~i~~c~ 772 (821)
+.. +..+++|+.|++++|+
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSC
T ss_pred CHhHhcccccccEEEccCCc
Confidence 332 3445555555555554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=5.9e-18 Score=186.67 Aligned_cols=229 Identities=16% Similarity=0.068 Sum_probs=113.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC----cccccc-------cCCCCceEEeecCCCCcc-
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN----QYPSEI-------ENLSLLRYLKLNIPSLKS- 555 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~----~lp~~i-------~~l~~Lr~L~L~~~~i~~- 555 (821)
.+++|++|.+.++.........+...+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45666666666655432111123334556666666666665433 223333 566666666666666654
Q ss_pred ----ccHHHHhccccceEEecCCccccc-----chhhhccC---------ccCceeecCCcccC-CCCC---CCcCCCCC
Q 045113 556 ----LPLSFFNYLLNLYTLDMPFSYIDH-----TADEFWKM---------KKLRHLNFGSITLP-AHPG---NYCGSLEN 613 (821)
Q Consensus 556 ----lp~~i~~~L~~L~~L~L~~~~l~~-----lp~~i~~l---------~~L~~L~L~~~~~~-~~~p---~~i~~l~~ 613 (821)
+|..+. .+++|++|+|++|.+.. ++..+..+ ++|++|++++|.+. ..+| ..+..+++
T Consensus 110 ~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 555565 66666666666665532 22233333 66666666666654 2222 23334445
Q ss_pred cceeccccCC-c------chh-hhcCCCCCCCeEEEecccccch----hHHHHHccCCCCcCEEEeecCCCCCCCCeeEe
Q 045113 614 LNFISALYPC-C------CTK-DLLGRLPNLRNLRIQGDLSYNQ----SLLSKSLCRLSCLESLKLANESKMPRLSKIIL 681 (821)
Q Consensus 614 L~~L~~~~~~-~------~~~-~~l~~l~~L~~L~l~~~~~~~~----~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l 681 (821)
|++|++..+. . ..+ . +..+++|+.|++++|. .. ..++..+..
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~----------------------- 242 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNT--FTHLGSSALAIALKS----------------------- 242 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSC--CHHHHHHHHHHHGGG-----------------------
T ss_pred cCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCC--CCcHHHHHHHHHHcc-----------------------
Confidence 5555544421 0 112 2 4444455555554442 11 334444444
Q ss_pred cccCCCCCcceEEEecccCCCC----Ccccc--cCCCCCCEEEEeccccCCC----eeeecCCCCcccceeeeccCC
Q 045113 682 AEYVFPHSLTHLSFSNTDLMDD----PMPAL--EKLPLLQVLKLKQNSYSGR----KLTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 682 ~~~~~~~~L~~L~L~~~~l~~~----~~~~l--~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~ 748 (821)
+++|+.|+|++|.+++. ++..+ +.+++|+.|+|++|.+.+. ........+++|++|++++|+
T Consensus 243 -----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 243 -----WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -----CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -----CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 45555555555554432 23333 2366666666666555442 111111335666666666664
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.1e-16 Score=167.75 Aligned_cols=199 Identities=21% Similarity=0.223 Sum_probs=120.0
Q ss_pred ceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccch-hhhccCccCceeec
Q 045113 519 LLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNF 595 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L 595 (821)
.|++|+|++|.++.++. .+.++++|++|++++|.+..++. .+. .+++|++|++++|.+..++ ..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56666777666665543 56666667777777666665554 344 6666777777766666554 45666667777777
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccCC--c--chhhhcCCCCCCCeEEEecccccchhHHHHHc---cCCCCcC-EEEe
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYPC--C--CTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSL---CRLSCLE-SLKL 667 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l---~~~~~L~-~L~l 667 (821)
++|.+....+..++.+++|++|++..|. . .+.. ++.+++|+.|++++|. .....+..+ ..++.|. +|++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeec
Confidence 6666654444456666677777666631 1 2344 6777777777777763 111111222 2333333 6666
Q ss_pred ecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 668 ANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 668 ~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
+.| .+..+....+ ...+|+.|+|++|.++...+..+..+++|+.|+|++|.+..
T Consensus 185 s~n----~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 185 SLN----PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSS----CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCC----cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 644 4444433222 23478888888888776555566778888888888776643
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=3.2e-17 Score=177.09 Aligned_cols=241 Identities=17% Similarity=0.133 Sum_probs=169.0
Q ss_pred eeEEEEEcCCCcccccC-CC--CCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCC-c-ccccccCCCCceE
Q 045113 471 KRFFALEQQSDFAYLDD-YY--PHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLN-Q-YPSEIENLSLLRY 545 (821)
Q Consensus 471 ~r~lsl~~~~~~~~~~~-~~--~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~-lp~~i~~l~~Lr~ 545 (821)
.+++.+..+..... .. .. ++++.|.+.++.... .+.. +..+++|+.|+|++|.++ . +|..+..+++|++
T Consensus 49 ~~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~----~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLHPD-VTGRLLSQGVIAFRCPRSFMDQ----PLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCCHH-HHHHHHHTTCSEEECTTCEECS----CCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCCHH-HHHhhhhccceEEEcCCccccc----cchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 45566654433211 11 33 899999998876542 2222 457899999999999987 3 8888999999999
Q ss_pred EeecCCCCc-cccHHHHhccccceEEecCCc-cccc--chhhhccCccCceeecCCc-ccCCC-CCCCcCCCCCcceecc
Q 045113 546 LKLNIPSLK-SLPLSFFNYLLNLYTLDMPFS-YIDH--TADEFWKMKKLRHLNFGSI-TLPAH-PGNYCGSLENLNFISA 619 (821)
Q Consensus 546 L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~L~~~-~~~~~-~p~~i~~l~~L~~L~~ 619 (821)
|++++|.+. ..|..+. .+++|++|++++| .+.. +|..+.++++|++|++++| .+... ++..
T Consensus 123 L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------------ 189 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA------------ 189 (336)
T ss_dssp EECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH------------
T ss_pred EeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH------------
Confidence 999999988 6788888 8999999999999 6774 6888899999999999999 66332 2222
Q ss_pred ccCCcchhhhcCCCC-CCCeEEEeccc-ccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEec
Q 045113 620 LYPCCCTKDLLGRLP-NLRNLRIQGDL-SYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSN 697 (821)
Q Consensus 620 ~~~~~~~~~~l~~l~-~L~~L~l~~~~-~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~ 697 (821)
+..++ +|+.|++++|. ......++..+..+++|+.|+++++ ..+..-.+..+..+++|+.|++++
T Consensus 190 ----------~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~---~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 190 ----------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS---VMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp ----------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC---TTCCGGGGGGGGGCTTCCEEECTT
T ss_pred ----------HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC---CcCCHHHHHHHhCCCCCCEeeCCC
Confidence 55566 77777777763 1233566777777888888888743 224433344456778888888888
Q ss_pred cc-CCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCC-cccceeeeccCC
Q 045113 698 TD-LMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGF-PRLKVLHLKSML 748 (821)
Q Consensus 698 ~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~ 748 (821)
|. +.......++++++|+.|++++| +....+. .+ .+|+.|++++|.
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~----~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ----LLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH----HHHHHSTTSEESCCC
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH----HHHhhCcceEEeccc
Confidence 84 33333446788899999999877 4332221 22 346777787664
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=3.7e-18 Score=188.29 Aligned_cols=245 Identities=17% Similarity=0.137 Sum_probs=172.8
Q ss_pred hhHHhhccCCceeEEEeCCCCCCc-----ccccccCCCCceEEeecCCCCc----cccHHH-------HhccccceEEec
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLNQ-----YPSEIENLSLLRYLKLNIPSLK----SLPLSF-------FNYLLNLYTLDM 572 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~~L~~L~~L~L 572 (821)
.+...+..+++|+.|+|++|.++. ++..+.++++|++|+|++|.+. .+|..+ . .+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~-~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL-KCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT-TCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh-hCCcccEEEC
Confidence 344667889999999999999872 4556788999999999997655 445554 5 7899999999
Q ss_pred CCccccc-----chhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCC---------CCCCe
Q 045113 573 PFSYIDH-----TADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRL---------PNLRN 638 (821)
Q Consensus 573 ~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l---------~~L~~ 638 (821)
++|.+.. +|..+.++++|++|++++|.+....+..+... +..+ ++|+.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA------------------LQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH------------------HHHHHHHHHHHTCCCCCE
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH------------------HHHHhhhhhcccCCCCcE
Confidence 9997766 78888999999999999998743222212110 2222 66777
Q ss_pred EEEecccc--cchhHHHHHccCCCCcCEEEeecCCCCCCCCe-----eEecccCCCCCcceEEEecccCC----CCCccc
Q 045113 639 LRIQGDLS--YNQSLLSKSLCRLSCLESLKLANESKMPRLSK-----IILAEYVFPHSLTHLSFSNTDLM----DDPMPA 707 (821)
Q Consensus 639 L~l~~~~~--~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~-----l~l~~~~~~~~L~~L~L~~~~l~----~~~~~~ 707 (821)
|++++|.- .....+...+..+++|++|++++| .+.. +....+..+++|+.|+|++|.++ ...+..
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n----~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN----GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS----CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC----CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 77777631 122233356667777888887754 3331 11113557788999999999875 445677
Q ss_pred ccCCCCCCEEEEeccccCCCee---eecC--CCCcccceeeeccCCCccc-----eeecc-ccccccceeEEeecCCCCC
Q 045113 708 LEKLPLLQVLKLKQNSYSGRKL---TCGS--DGFPRLKVLHLKSMLWLEE-----WTMGT-GAMPKLECLIINPCAYLKK 776 (821)
Q Consensus 708 l~~l~~L~~L~L~~~~~~~~~~---~~~~--~~~~~L~~L~L~~~~~l~~-----~~~~~-~~l~~L~~L~i~~c~~l~~ 776 (821)
+..+++|+.|+|++|.+.+... .... +.+++|++|+|++|. +.. ++..+ .++|+|+.|++++|+....
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 8899999999999888765421 1112 458999999999985 544 66555 5689999999999986554
Q ss_pred C
Q 045113 777 M 777 (821)
Q Consensus 777 l 777 (821)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=2.8e-16 Score=167.27 Aligned_cols=202 Identities=20% Similarity=0.208 Sum_probs=131.7
Q ss_pred EeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCC
Q 045113 524 DLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAH 603 (821)
Q Consensus 524 ~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~ 603 (821)
.+..+.+.... ....+++|++|++++|.+..+| .+. .+++|++|++++|.+..++. +..+++|++|++++|.+..
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~-~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQ-YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGG-GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhh-ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-
Confidence 34455554432 2456889999999999999988 677 99999999999999999988 9999999999999999844
Q ss_pred CCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEec
Q 045113 604 PGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILA 682 (821)
Q Consensus 604 ~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~ 682 (821)
++ .+..+++|++|++..+ -..+.. +..+++|+.|++++|.- ..++. +..+++|+.|+++.| .+..+..
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l---~~~~~-l~~l~~L~~L~l~~n----~l~~~~~- 168 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI---TNISP-LAGLTNLQYLSIGNA----QVSDLTP- 168 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC---CCCGG-GGGCTTCCEEECCSS----CCCCCGG-
T ss_pred ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc---CcCcc-ccCCCCccEEEccCC----cCCCChh-
Confidence 44 4777888888887774 223344 67777777777777631 11111 555566666666543 2332211
Q ss_pred ccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccC
Q 045113 683 EYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSM 747 (821)
Q Consensus 683 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 747 (821)
+..+++|+.|++++|.+++. +.+..+++|+.|+|++|.+.+.. ....+++|+.|++++|
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcC--hhhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCC
Confidence 44556666666666655432 12555666666666655554432 1345556666666655
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=7.8e-16 Score=162.25 Aligned_cols=198 Identities=18% Similarity=0.095 Sum_probs=143.3
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccccHHHHhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 566 (821)
.+++++++.+.++.... ++..+ .+.+++|+|++|.++.+ |..+..+++|++|++++|.+..+|.. . .+++
T Consensus 8 ~l~~l~~l~~~~~~l~~----ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-~l~~ 78 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA----LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G-TLPV 78 (290)
T ss_dssp CSTTCCEEECTTSCCSS----CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-S-CCTT
T ss_pred ccCCccEEECCCCCCCc----CCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-C-CCCc
Confidence 56677777777666543 22222 25788888888888755 45688888888888888888877755 5 7888
Q ss_pred ceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecc
Q 045113 567 LYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
|++|++++|.+..+|..+..+++|++|++++|.+....|..+..+++|++|++..| ...+...+..+++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888888888888888888888888888888886555566888888888888774 3444443678888888888887
Q ss_pred cccchhHHHH-HccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCC
Q 045113 645 LSYNQSLLSK-SLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMD 702 (821)
Q Consensus 645 ~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~ 702 (821)
. ...+|. .+..+++|+.|+++.| .++.+ ..++..+++|+.|+|++|.+..
T Consensus 159 ~---l~~l~~~~~~~l~~L~~L~L~~N----~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 N---LTELPAGLLNGLENLDTLLLQEN----SLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp C---CSCCCTTTTTTCTTCCEEECCSS----CCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred c---CCccCHHHhcCcCCCCEEECCCC----cCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 3 223333 4567888999998865 44433 2335566789999999998653
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=8.6e-16 Score=160.35 Aligned_cols=197 Identities=21% Similarity=0.249 Sum_probs=145.6
Q ss_pred CceEEeecCCCCccccHHHHhccccceEEecCCcccccchh-hhccCccCceeecCCcccCCCCCCCcCCCCCcceeccc
Q 045113 542 LLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISAL 620 (821)
Q Consensus 542 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~ 620 (821)
.+++++++++.+..+|..+. .+|+.|++++|.+..+|. .+.++++|++|++++|.+....+..+..+++|++|++.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57899999999999997654 689999999999988865 78899999999999998854333334666666666665
Q ss_pred cC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecc
Q 045113 621 YP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNT 698 (821)
Q Consensus 621 ~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~ 698 (821)
.+ ...+...+..++ +|+.|++++| .++.+....+..+++|+.|+|++|
T Consensus 94 ~n~l~~~~~~~~~~l~--------------------------~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLV--------------------------NLAELRLDRN----QLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SSCCCCCCTTTTTTCS--------------------------SCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCcCCHhHccccc--------------------------CCCEEECCCC----ccCeeCHHHhCcCcCCCEEECCCC
Confidence 53 122222134444 4555554432 333333333567899999999999
Q ss_pred cCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeec-cccccccceeEEeecCC
Q 045113 699 DLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMG-TGAMPKLECLIINPCAY 773 (821)
Q Consensus 699 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~i~~c~~ 773 (821)
.+....+..++.+++|+.|+|++|.+.... ...+..+++|++|++++| .+..++.. +..+++|+.|++++|+.
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 988766667899999999999988877633 233567899999999998 56666653 67899999999999874
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=6.7e-16 Score=167.67 Aligned_cols=236 Identities=15% Similarity=0.062 Sum_probs=124.5
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHH-HHhccccceEEecCCccc-ccchh-hhccCccCce-eecC
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLS-FFNYLLNLYTLDMPFSYI-DHTAD-EFWKMKKLRH-LNFG 596 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l-~~lp~-~i~~l~~L~~-L~L~ 596 (821)
++++.+++.++.+|..+ .+++++|+|++|.|+.+|.. +. ++++|++|+|++|.+ +.+|. .|.++++|.. +.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSST-TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHc-CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777888888888766 35788888888888888864 45 788888888888865 44544 4567777765 4444
Q ss_pred CcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCC
Q 045113 597 SITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 674 (821)
Q Consensus 597 ~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 674 (821)
+|.+....|..+..+++|++|++..| ...+...+....++..|++.++ .
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------------~ 139 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------------I 139 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------------T
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------------c
Confidence 56664444455566666666665552 1111111222333344444332 2
Q ss_pred CCCeeEecccCCC-CCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce
Q 045113 675 RLSKIILAEYVFP-HSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW 753 (821)
Q Consensus 675 ~L~~l~l~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 753 (821)
.+..+....+..+ ..++.|+|++|.++. +++.....++|+.|.+.+++..+......+.++++|+.|++++| .++.+
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~l 217 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL 217 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCC
T ss_pred ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCcc
Confidence 2333222222222 234555555555432 22233334455555554333333222223344555555555554 34444
Q ss_pred eeccccccccceeEEeecCCCCCCccccCCCCCCCEEEEe
Q 045113 754 TMGTGAMPKLECLIINPCAYLKKMPEQLWCIKSLNNFNCW 793 (821)
Q Consensus 754 ~~~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~ 793 (821)
|. +.+.+|++|.+.+|..++.+|. +..+++|+.+++.
T Consensus 218 p~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 218 PS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred Ch--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 42 2345555555555555555553 4555555555553
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=7.9e-16 Score=157.51 Aligned_cols=207 Identities=18% Similarity=0.268 Sum_probs=118.9
Q ss_pred CCcccccccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcc-cccchh-hhccCccCceeecCC-cccCCCCC
Q 045113 530 LNQYPSEIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSY-IDHTAD-EFWKMKKLRHLNFGS-ITLPAHPG 605 (821)
Q Consensus 530 l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~L~~-~~~~~~~p 605 (821)
++.+|. +. .+|++|++++|.+..+|. .+. .+++|++|++++|. +..+|. .+.++++|++|++++ |.+. .+|
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~ 97 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID 97 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC
Confidence 555555 33 267777777777776665 344 67777777777774 666654 566677777777766 5552 222
Q ss_pred CCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccC
Q 045113 606 NYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYV 685 (821)
Q Consensus 606 ~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~ 685 (821)
.. . +..+++|+.|+++++. ...+|. +..+++
T Consensus 98 ~~--------------------~-f~~l~~L~~L~l~~n~---l~~lp~-~~~l~~------------------------ 128 (239)
T 2xwt_C 98 PD--------------------A-LKELPLLKFLGIFNTG---LKMFPD-LTKVYS------------------------ 128 (239)
T ss_dssp TT--------------------S-EECCTTCCEEEEEEEC---CCSCCC-CTTCCB------------------------
T ss_pred HH--------------------H-hCCCCCCCEEeCCCCC---Cccccc-cccccc------------------------
Confidence 11 0 4455556666666551 101111 111111
Q ss_pred CCCCcceEEEecc-cCCCCCcccccCCCCCC-EEEEeccccCCCeeeecCCCCcccceeeeccCCCccceee-ccccc-c
Q 045113 686 FPHSLTHLSFSNT-DLMDDPMPALEKLPLLQ-VLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM-GTGAM-P 761 (821)
Q Consensus 686 ~~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l-~ 761 (821)
++.|+.|++++| .+....+..+.++++|+ .|++++|.+.. .....+.. ++|+.|++++|+.+..++. .+..+ +
T Consensus 129 -L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 129 -TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp -CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred -cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 112336666666 55444444566777777 77777666542 11111222 6788888887755666643 35667 7
Q ss_pred ccceeEEeecCCCCCCccccCCCCCCCEEEEeCCc
Q 045113 762 KLECLIINPCAYLKKMPEQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 762 ~L~~L~i~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 796 (821)
+|+.|++++|. ++.+|.. .+++|+.|+++++.
T Consensus 206 ~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 206 GPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 88888888765 4566654 57788888887765
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=160.48 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=70.7
Q ss_pred CCCCceEEEeecCCCCccchhhhHHh--hccCCceeEEEeCCCCCC-cccccc--cCCCCceEEeecCCCCcc-cc----
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKI--CEMYKLLRVLDLGSLVLN-QYPSEI--ENLSLLRYLKLNIPSLKS-LP---- 557 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~--~~~~~~Lr~L~L~~~~l~-~lp~~i--~~l~~Lr~L~L~~~~i~~-lp---- 557 (821)
....++.+.+.+..... .....+ +..++.|+.|+|++|.+. ..|..+ +++++|++|++++|.+.. .|
T Consensus 62 ~~~~l~~l~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPA---QLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SSCCCCEEEECSCCCBH---HHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hhcceeEEEEeCCcCCH---HHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 34456666666555431 111111 223456888888888876 556666 778888888888888773 22
Q ss_pred HHHHhccccceEEecCCcccccch-hhhccCccCceeecCCcccC
Q 045113 558 LSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSITLP 601 (821)
Q Consensus 558 ~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~ 601 (821)
..+. .+++|++|++++|.+..+| ..+..+++|++|++++|.+.
T Consensus 139 ~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 139 LQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp HHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred HHhh-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence 2334 5778888888888776664 46677788888888777653
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2.9e-16 Score=171.46 Aligned_cols=234 Identities=16% Similarity=0.171 Sum_probs=146.2
Q ss_pred hhHHhhccCCceeEEEeCCCCCCccc-----ccccCCC-CceEEeecCCCCccc-cHHHHhcc-----ccceEEecCCcc
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLNQYP-----SEIENLS-LLRYLKLNIPSLKSL-PLSFFNYL-----LNLYTLDMPFSY 576 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~~L-----~~L~~L~L~~~~ 576 (821)
..+.++...++|+.|+|++|.++..+ ..+.+++ +|++|+|++|.+... +..+. .+ ++|++|++++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH-HHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH-HHHhccCCCccEEECcCCc
Confidence 45566666777888888888887554 5677777 888888888888744 45555 54 888888888887
Q ss_pred cccch-hh----hccC-ccCceeecCCcccCCCCCCC----cCC-CCCcceeccccCC-------cchhhhcCCCC-CCC
Q 045113 577 IDHTA-DE----FWKM-KKLRHLNFGSITLPAHPGNY----CGS-LENLNFISALYPC-------CCTKDLLGRLP-NLR 637 (821)
Q Consensus 577 l~~lp-~~----i~~l-~~L~~L~L~~~~~~~~~p~~----i~~-l~~L~~L~~~~~~-------~~~~~~l~~l~-~L~ 637 (821)
+...+ .. +..+ ++|++|++++|.+....+.. +.. .++|++|++.+|. ..... +..++ +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCcccc
Confidence 76553 33 3444 78888888888875543322 233 2577777777631 11222 45555 788
Q ss_pred eEEEecccc--cchhHHHHHccCC-CCcCEEEeecCCCCCCCCeeEecc----cCC-CCCcceEEEecccCCCCCc----
Q 045113 638 NLRIQGDLS--YNQSLLSKSLCRL-SCLESLKLANESKMPRLSKIILAE----YVF-PHSLTHLSFSNTDLMDDPM---- 705 (821)
Q Consensus 638 ~L~l~~~~~--~~~~~l~~~l~~~-~~L~~L~l~~~~~~~~L~~l~l~~----~~~-~~~L~~L~L~~~~l~~~~~---- 705 (821)
.|++++|.- .....+...+..+ ++|+.|++++| .+....... +.. .++|+.|+|++|.+.+..+
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN----LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS----CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC----CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 888888741 1223444455555 47888888754 333311110 222 4578888888887765444
Q ss_pred ccccCCCCCCEEEEeccccCCCe------eeecCCCCcccceeeeccCC
Q 045113 706 PALEKLPLLQVLKLKQNSYSGRK------LTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 706 ~~l~~l~~L~~L~L~~~~~~~~~------~~~~~~~~~~L~~L~L~~~~ 748 (821)
..+..+++|+.|+|++|.+.... +......+++|+.|++++|+
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 23456777888888877643321 11224456677777777764
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.7e-15 Score=154.93 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=115.5
Q ss_pred ceeEEEeCCCCCCcccc-cccCCCCceEEeecCCC-CccccH-HHHhccccceEEecCC-cccccchh-hhccCccCcee
Q 045113 519 LLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPS-LKSLPL-SFFNYLLNLYTLDMPF-SYIDHTAD-EFWKMKKLRHL 593 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~-~i~~~L~~L~~L~L~~-~~l~~lp~-~i~~l~~L~~L 593 (821)
.|+.|+|++|.++.+|. .+.++++|++|++++|. +..+|. .+. .+++|++|++++ |.+..+|. .+.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-SCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 78888888888887765 67888889999998886 887776 455 888899999988 78888864 57788889999
Q ss_pred ecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHH-HHccCCCCcC-EEEeecCC
Q 045113 594 NFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLS-KSLCRLSCLE-SLKLANES 671 (821)
Q Consensus 594 ~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~~~L~-~L~l~~~~ 671 (821)
++++|.+.+ +|. ++.+++|+ .|+.|+++++. ....++ ..+..+++|+ .|+++.|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~-------------------~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~~n- 166 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTD-------------------IFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYNN- 166 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCC-------------------SEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECCSC-
T ss_pred eCCCCCCcc-ccc-cccccccc-------------------cccEEECCCCc--chhhcCcccccchhcceeEEEcCCC-
Confidence 888888744 554 44443333 12244444430 011111 1233344444 4444322
Q ss_pred CCCCCCeeEecccCCCCCcceEEEeccc-CCCCCcccccCC-CCCCEEEEeccccCCCeeeecCCCCcccceeeeccC
Q 045113 672 KMPRLSKIILAEYVFPHSLTHLSFSNTD-LMDDPMPALEKL-PLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSM 747 (821)
Q Consensus 672 ~~~~L~~l~l~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 747 (821)
.++.+....+.. ++|+.|+|++|. +....+..+..+ ++|+.|++++|.+.... ...|++|+.|.+.++
T Consensus 167 ---~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~----~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 ---GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP----SKGLEHLKELIARNT 236 (239)
T ss_dssp ---CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC----CTTCTTCSEEECTTC
T ss_pred ---CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC----hhHhccCceeeccCc
Confidence 233222111222 456666666663 543334445555 66666666655554321 124556666665554
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1.2e-14 Score=149.86 Aligned_cols=176 Identities=22% Similarity=0.253 Sum_probs=109.8
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccchh-hhccCccCceeec
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNF 595 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L 595 (821)
...+.++++++.++.+|..+. .+|++|+|++|.+..++. .+. ++++|++|++++|.+..++. .+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 457788999998888887765 588999999999886665 466 88999999999998887754 4788899999999
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
++|.+....+..++.+++|++|++..| ...+...+.. +++|+.|+++.|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------------------------l~~L~~L~Ls~N--- 141 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------------------------LTKLKELRLNTN--- 141 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------CTTCCEEECCSS---
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc--------------------------CCcccEEECcCC---
Confidence 998885544444455555555544432 1111111233 333333333322
Q ss_pred CCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 674 PRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
.++.+....+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+..
T Consensus 142 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 142 -QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 2222222223445566666666666555444456666666666666655543
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=1.4e-16 Score=173.88 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=166.4
Q ss_pred EEEeCCCCCC-cccccccCCCCceEEeecCCCCcccc-----HHHHhccc-cceEEecCCcccccc-hhhhccC-----c
Q 045113 522 VLDLGSLVLN-QYPSEIENLSLLRYLKLNIPSLKSLP-----LSFFNYLL-NLYTLDMPFSYIDHT-ADEFWKM-----K 588 (821)
Q Consensus 522 ~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~~lp-----~~i~~~L~-~L~~L~L~~~~l~~l-p~~i~~l-----~ 588 (821)
.++|+.+.++ .+|..+....+|++|+|++|.+...+ ..+. .++ +|++|+|++|.+... +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4678888888 45555666667999999999999776 4566 788 999999999988776 5566664 9
Q ss_pred cCceeecCCcccCCCCCCC----cCCC-CCcceeccccCC---cch---hhhcCC-CCCCCeEEEeccc--ccchhHHHH
Q 045113 589 KLRHLNFGSITLPAHPGNY----CGSL-ENLNFISALYPC---CCT---KDLLGR-LPNLRNLRIQGDL--SYNQSLLSK 654 (821)
Q Consensus 589 ~L~~L~L~~~~~~~~~p~~----i~~l-~~L~~L~~~~~~---~~~---~~~l~~-l~~L~~L~l~~~~--~~~~~~l~~ 654 (821)
+|++|++++|.+....+.. +..+ ++|++|++..|. ..+ ...+.. .++|+.|++++|. ......++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999986655543 3334 788999888841 111 122445 3588999988874 122346667
Q ss_pred HccCCC-CcCEEEeecCCCCCCCCeeEecc----cCCC-CCcceEEEecccCCCCC----cccccC-CCCCCEEEEeccc
Q 045113 655 SLCRLS-CLESLKLANESKMPRLSKIILAE----YVFP-HSLTHLSFSNTDLMDDP----MPALEK-LPLLQVLKLKQNS 723 (821)
Q Consensus 655 ~l~~~~-~L~~L~l~~~~~~~~L~~l~l~~----~~~~-~~L~~L~L~~~~l~~~~----~~~l~~-l~~L~~L~L~~~~ 723 (821)
.+..++ +|++|++++| .+....... +..+ ++|+.|+|++|.+.+.. +..+.. .++|+.|+|++|.
T Consensus 161 ~l~~~~~~L~~L~Ls~n----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGN----NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHTSCTTCCEEECTTS----CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHhcCCccccEeeecCC----CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 776665 8888888764 343322211 2334 58888888888876533 333444 3488888888877
Q ss_pred cCCCee---eecCCCCcccceeeeccCC---C----ccceeeccccccccceeEEeecCC
Q 045113 724 YSGRKL---TCGSDGFPRLKVLHLKSML---W----LEEWTMGTGAMPKLECLIINPCAY 773 (821)
Q Consensus 724 ~~~~~~---~~~~~~~~~L~~L~L~~~~---~----l~~~~~~~~~l~~L~~L~i~~c~~ 773 (821)
+.+... ......+++|+.|++++|. . +..++..+..+++|+.|++++|+.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 766432 2334667888888888874 0 122333455677788888887764
No 98
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.56 E-value=4.9e-15 Score=130.96 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhcchhhccccccchhHHHHHHHHHHHHHHHHhhhhhhhHHhhhhcccc--cCCChhHHHHHHHHHHH
Q 045113 11 INFRLFSERLRRVLAGEEVALPDAAKQPIQNLHAEIEVVTSWLRDFEYDMSWLLLQKIAED--ENDNPDLRTVMDEINCF 88 (821)
Q Consensus 11 ~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~wl~~l~~~ 88 (821)
|+++++++|+.+++. +|+.++.+++++++.|+++|+.|+++|.||+. + +..++.++.|+++||++
T Consensus 1 a~v~~ll~KL~~ll~-~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~------------~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 1 AAISNLIPKLGELLT-EEFKLHKGVKKNIEDLGKELESMNAALIKIGE------------VPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp CTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------SCGGGCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH------------hccccCCHHHHHHHHHHHHH
Confidence 467889999999999 99999999999999999999999999999998 5 56789999999999999
Q ss_pred HhhhHHHHHHhHhhhcc
Q 045113 89 TYESEKVIDTFISSITQ 105 (821)
Q Consensus 89 ~~~~ed~ld~~~~~~~~ 105 (821)
+||+||++|+|.++...
T Consensus 68 aYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 68 SYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998754
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=160.06 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=65.5
Q ss_pred ceeEEEeCCCCCC--cccc--cccCCCCceEEeecCCCCc-cccHHH--HhccccceEEecCCcccccc-h----hhhcc
Q 045113 519 LLRVLDLGSLVLN--QYPS--EIENLSLLRYLKLNIPSLK-SLPLSF--FNYLLNLYTLDMPFSYIDHT-A----DEFWK 586 (821)
Q Consensus 519 ~Lr~L~L~~~~l~--~lp~--~i~~l~~Lr~L~L~~~~i~-~lp~~i--~~~L~~L~~L~L~~~~l~~l-p----~~i~~ 586 (821)
.++.|.+.++.++ .+.. ....+++|++|++++|.+. ..|..+ . .+++|++|++++|.+... | ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEA-TGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSC-CCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhc-cCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4667777777664 1111 1223456888888888776 455555 5 778888888888866542 1 34456
Q ss_pred CccCceeecCCcccCCCCCCCcCCCCCcceeccccC
Q 045113 587 MKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 587 l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~ 622 (821)
+++|++|++++|.+....|..++.+++|++|++.+|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 778888888888775555566666666666665553
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=8.9e-15 Score=154.25 Aligned_cols=171 Identities=20% Similarity=0.166 Sum_probs=100.0
Q ss_pred ccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceee
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLN 594 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 594 (821)
..++.|+.|++++|.+..++. +..+++|++|++++|.+..++. +. .+++|++|++++|.+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~-~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LA-NLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GT-TCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cc-cCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 456667777777777766653 6667777777777777776665 55 77777777777776666554 66777777777
Q ss_pred cCCcccCCCCCCCcCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 595 FGSITLPAHPGNYCGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 595 L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
+++|.+.. + ..+..+++|+.|++..|. ..+.. +..+++|+.|++++|
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N----------------------------- 166 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDN----------------------------- 166 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSS-----------------------------
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcchh-hccCCCCCEEEccCC-----------------------------
Confidence 77776633 2 224444444444443321 11122 444444444444444
Q ss_pred CCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 674 PRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
.+..+.. +..+++|+.|++++|.+++ .+.+..+++|+.|++++|.+..
T Consensus 167 -~l~~~~~--l~~l~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 167 -QISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CCCCCGG--GTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEEEC
T ss_pred -ccccchh--hcCCCccCEEECCCCcCCC--ChhhccCCCCCEEECcCCcccC
Confidence 2222211 3456666666666776643 2346777777777777666544
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=9.9e-15 Score=168.94 Aligned_cols=172 Identities=18% Similarity=0.155 Sum_probs=89.3
Q ss_pred ccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceee
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLN 594 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 594 (821)
..++.|+.|++++|.+..+| .+..+++|++|+|++|.+..+|. +. .+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~-~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LT-NLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GG-GCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hc-cCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 34555666666666655554 35556666666666666665554 44 5666666666666555554 455566666666
Q ss_pred cCCcccCCCCCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCC
Q 045113 595 FGSITLPAHPGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 673 (821)
Q Consensus 595 L~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 673 (821)
|++|.+.. + ..+..+++|+.|++..| -..+.. +..+++|+.|++++|. .....| +..+++|+.|+|+.|
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N--- 185 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSKN--- 185 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCSS---
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCchh-hcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcCC---
Confidence 66665532 2 22445555555555442 111233 5555666666666552 111111 455555555555543
Q ss_pred CCCCeeEecccCCCCCcceEEEecccCCCC
Q 045113 674 PRLSKIILAEYVFPHSLTHLSFSNTDLMDD 703 (821)
Q Consensus 674 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~ 703 (821)
.+..+ ..+..+++|+.|+|++|.+.+.
T Consensus 186 -~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 -HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred -CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 23322 2244555555555555555443
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=1e-14 Score=168.82 Aligned_cols=191 Identities=20% Similarity=0.207 Sum_probs=146.4
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCC
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGS 597 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~ 597 (821)
..+..+.+..+.+..++. +..|.+|++|++++|.+..+| .+. .|++|+.|+|++|.+..+|+ +..+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~-~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQ-YLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGG-GCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHc-cCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 345556677777665543 567899999999999999988 677 99999999999999999987 89999999999999
Q ss_pred cccCCCCCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCC
Q 045113 598 ITLPAHPGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 676 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L 676 (821)
|.+.. +| .++.+++|+.|++..| -..+.. +..+++|+.|++++|.- . .+ ..+..+++|+.|+|+.| .+
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l--~-~l-~~l~~l~~L~~L~Ls~N----~l 165 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKI--T-DI-TVLSRLTKLDTLSLEDN----QI 165 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCC--C-CC-GGGGSCTTCSEEECCSS----CC
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCcc--C-Cc-hhhcccCCCCEEECcCC----cC
Confidence 99844 44 6888999999998885 233455 78888999999988742 1 22 46777888888888754 34
Q ss_pred CeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCC
Q 045113 677 SKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGR 727 (821)
Q Consensus 677 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 727 (821)
..+.. +..+++|+.|+|++|.+.+ ++.+..|++|+.|+|++|.+.+.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEEECC
T ss_pred CCchh--hccCCCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcCcCC
Confidence 44322 5677888888888887754 35678888888888887776553
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.7e-14 Score=165.20 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=74.2
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCC
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGS 597 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~ 597 (821)
.+|+.|+|++|.++.+|..+. ++|++|+|++|.+..+| . .+++|++|++++|.+..+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~-~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---E-LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---C-CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---c-ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 489999999999999988764 78999999999999998 4 78999999999999988988 665 899999999
Q ss_pred cccCCCCCCCcCCCCCcceecccc
Q 045113 598 ITLPAHPGNYCGSLENLNFISALY 621 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~ 621 (821)
|.+.+ +|. .+++|+.|++.+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCS
T ss_pred CcCCC-CCC---cCccccEEeCCC
Confidence 98854 554 344555555433
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=3.6e-14 Score=153.97 Aligned_cols=235 Identities=12% Similarity=0.052 Sum_probs=158.5
Q ss_pred eEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCc-cccHHHHhccccceE-
Q 045113 493 HSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLK-SLPLSFFNYLLNLYT- 569 (821)
Q Consensus 493 rsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~- 569 (821)
+++...+..... ++..+ .++++.|+|++|.|+.+|. .+.++++|++|+|++|.+. .+|.....++++|+.
T Consensus 12 ~~v~C~~~~Lt~----iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTE----IPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCS----CCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCCc----cCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 566666655543 33322 3689999999999999986 5899999999999999975 577554338888775
Q ss_pred EecCCcccccc-hhhhccCccCceeecCCcccCCCCCCCcCCCCCcceecccc-C--CcchhhhcCCCC-CCCeEEEecc
Q 045113 570 LDMPFSYIDHT-ADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALY-P--CCCTKDLLGRLP-NLRNLRIQGD 644 (821)
Q Consensus 570 L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~-~--~~~~~~~l~~l~-~L~~L~l~~~ 644 (821)
+.++.|.+..+ |..+..+++|++|++++|.+....+..+....++..|++.. + ...+...+..+. .++.|+++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 55566789988 45678999999999999998655455555666777777544 2 122221123332 3444444443
Q ss_pred cccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecc-cCCCCCcccccCCCCCCEEEEeccc
Q 045113 645 LSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNT-DLMDDPMPALEKLPLLQVLKLKQNS 723 (821)
Q Consensus 645 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~ 723 (821)
.++.+... .....+|+.|.++++ .+.......++.+++|+.|+|++|.
T Consensus 165 ------------------------------~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 165 ------------------------------GIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp ------------------------------CCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ------------------------------cccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 33333221 223456777777654 4443334467888888888888887
Q ss_pred cCCCeeeecCCCCcccceeeeccCCCccceeeccccccccceeEEee
Q 045113 724 YSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGAMPKLECLIINP 770 (821)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~i~~ 770 (821)
+.... ...|.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 214 l~~lp----~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 214 IHSLP----SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCC----SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cCccC----hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 76532 35678888888888888888873 67788888888864
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1e-13 Score=138.41 Aligned_cols=180 Identities=22% Similarity=0.261 Sum_probs=113.7
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhh-hccCccCceeecCCcc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNFGSIT 599 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~ 599 (821)
+.++++++.++.+|..+ .++|++|++++|.+..+|......+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777554 45788888888888877765432788888888888877777654 5678888888888887
Q ss_pred cCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCee
Q 045113 600 LPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKI 679 (821)
Q Consensus 600 ~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l 679 (821)
+....+.. +..+++|+.|+++++. +..+
T Consensus 88 l~~~~~~~----------------------~~~l~~L~~L~L~~N~------------------------------l~~~ 115 (208)
T 2o6s_A 88 LQSLPNGV----------------------FDKLTQLKELALNTNQ------------------------------LQSL 115 (208)
T ss_dssp CCCCCTTT----------------------TTTCTTCCEEECCSSC------------------------------CCCC
T ss_pred CCccCHhH----------------------hcCccCCCEEEcCCCc------------------------------Cccc
Confidence 74322222 3445555555555541 1111
Q ss_pred EecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceeecccc
Q 045113 680 ILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTMGTGA 759 (821)
Q Consensus 680 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 759 (821)
....+..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+ .+++|++|.++.+.....+|..++.
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 11112345566666666776665555556777788888887665432 4567777777776555566666555
Q ss_pred ccc
Q 045113 760 MPK 762 (821)
Q Consensus 760 l~~ 762 (821)
++.
T Consensus 188 l~~ 190 (208)
T 2o6s_A 188 VAP 190 (208)
T ss_dssp BCT
T ss_pred ccC
Confidence 544
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=1.4e-13 Score=141.77 Aligned_cols=168 Identities=20% Similarity=0.175 Sum_probs=107.3
Q ss_pred EEEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCC
Q 045113 473 FFALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIP 551 (821)
Q Consensus 473 ~lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~ 551 (821)
++.+.+......+..-.++++.|.+.++.... ..+..|..+++|++|+|++|.++.++ ..+..+++|++|++++|
T Consensus 18 ~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLAT----LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp EEECTTCCCSSCCSCCCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEecCCCCccccCCCCCCCCCEEEccCCCcCc----cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34444333333322233567777777766543 44456677777777777777777554 34677777777777777
Q ss_pred CCccccHHHHhccccceEEecCCcccccchhh-hccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC--Ccchhh
Q 045113 552 SLKSLPLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKD 628 (821)
Q Consensus 552 ~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~ 628 (821)
.+..+|......+++|++|++++|.+..+|.. +..+++|++|++++|.+....+..++.+++|++|++..| ...+..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 77766654433777777777777777777654 466777777777777775444445677777777777664 233332
Q ss_pred hcCCCCCCCeEEEecc
Q 045113 629 LLGRLPNLRNLRIQGD 644 (821)
Q Consensus 629 ~l~~l~~L~~L~l~~~ 644 (821)
.+..+++|+.|++++|
T Consensus 174 ~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 174 AFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTTCTTCCEEECCSC
T ss_pred HHhCCCCCCEEEeeCC
Confidence 2666667777777665
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=4.7e-14 Score=146.35 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=107.1
Q ss_pred cCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeec
Q 045113 516 MYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNF 595 (821)
Q Consensus 516 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L 595 (821)
.+..+..++++++.++.++ .+..+++|++|++++|.+..+| .+. .+++|++|++++|.+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~-~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQ-FFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGG-GCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHh-hCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 4555666777777777666 4677778888888888877777 666 78888888888887777776 777888888888
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCC
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 674 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 674 (821)
++|.+.. +|... . ++|++|++.+|. ..+.. +..+++|+.|++++|
T Consensus 93 ~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N------------------------------ 138 (263)
T 1xeu_A 93 NRNRLKN-LNGIP-S-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNN------------------------------ 138 (263)
T ss_dssp CSSCCSC-CTTCC-C-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTS------------------------------
T ss_pred CCCccCC-cCccc-c-CcccEEEccCCccCCChh-hcCcccccEEECCCC------------------------------
Confidence 8877733 43321 1 444444444421 11222 444444555544444
Q ss_pred CCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCC
Q 045113 675 RLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGR 727 (821)
Q Consensus 675 ~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 727 (821)
.++.+ ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 139 ~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 139 KLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 22222 1244566677777777776543 5667777777777777766543
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=4.9e-14 Score=139.46 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=37.0
Q ss_pred hccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcc-ccHHHHhccccceEEecCCccccc-chhhhccCccCc
Q 045113 514 CEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKS-LPLSFFNYLLNLYTLDMPFSYIDH-TADEFWKMKKLR 591 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~ 591 (821)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. .|..+. .+++|++|++++|.+.. .|..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 344444444444444433332 34444444444444444442 333444 44444444444444432 234444444444
Q ss_pred eeecCCcc
Q 045113 592 HLNFGSIT 599 (821)
Q Consensus 592 ~L~L~~~~ 599 (821)
+|++++|.
T Consensus 140 ~L~L~~n~ 147 (197)
T 4ezg_A 140 SIDLSYNG 147 (197)
T ss_dssp EEECCSCT
T ss_pred EEEccCCC
Confidence 44444444
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=2.3e-13 Score=134.56 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=73.2
Q ss_pred cCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCccee
Q 045113 538 ENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFI 617 (821)
Q Consensus 538 ~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L 617 (821)
+.+++|++|++++|.+..+| .+. .+++|++|++++|.+..++ .+..+++|++|++++|.+....|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~-~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIE-YAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGG-GCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHh-cCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 33445555555555555555 444 5555555555555444433 35555555555555555543333333333333333
Q ss_pred ccccC---CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEE
Q 045113 618 SALYP---CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLS 694 (821)
Q Consensus 618 ~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~ 694 (821)
++..+ ...+.. ++.+++|+.|++++|. .+..+ ..+..+++|+.|+
T Consensus 118 ~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~-----------------------------~i~~~--~~l~~l~~L~~L~ 165 (197)
T 4ezg_A 118 DISHSAHDDSILTK-INTLPKVNSIDLSYNG-----------------------------AITDI--MPLKTLPELKSLN 165 (197)
T ss_dssp ECCSSBCBGGGHHH-HTTCSSCCEEECCSCT-----------------------------BCCCC--GGGGGCSSCCEEE
T ss_pred EecCCccCcHhHHH-HhhCCCCCEEEccCCC-----------------------------Ccccc--HhhcCCCCCCEEE
Confidence 32221 011222 4444555555554441 01111 1234566677777
Q ss_pred EecccCCCCCcccccCCCCCCEEEEeccccC
Q 045113 695 FSNTDLMDDPMPALEKLPLLQVLKLKQNSYS 725 (821)
Q Consensus 695 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 725 (821)
+++|.+++ .+.+..+++|+.|++++|.+.
T Consensus 166 l~~n~i~~--~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 166 IQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTBCCCC--CTTGGGCSSCCEEEECBC---
T ss_pred CCCCCCcC--hHHhccCCCCCEEEeeCcccC
Confidence 77777654 226677777777777766653
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=9.3e-13 Score=138.73 Aligned_cols=166 Identities=20% Similarity=0.184 Sum_probs=113.9
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.+++|+.|.+.++.... . ..+..+++|++|+|++|.++.++. ++++++|++|++++|.+..+|. +. .+++|
T Consensus 44 ~l~~L~~L~l~~~~i~~----~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~-~l~~L 114 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS----V--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LK-DLKKL 114 (291)
T ss_dssp HHHTCCEEECTTSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GT-TCTTC
T ss_pred hcCcccEEEccCCCccc----C--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hc-cCCCC
Confidence 46667777777665542 1 236677778888888777776666 7777778888888777777663 66 77778
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecccc
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGDLS 646 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 646 (821)
++|++++|.+..++ .+..+++|++|++++|.+.. + ..++.+++|++|++..|. ..... +..+++|+.|++++|.
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~- 189 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH- 189 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-
Confidence 88888777777663 46777778888887777744 3 457777777777777742 22333 6777888888888773
Q ss_pred cchhHHHHHccCCCCcCEEEeecC
Q 045113 647 YNQSLLSKSLCRLSCLESLKLANE 670 (821)
Q Consensus 647 ~~~~~l~~~l~~~~~L~~L~l~~~ 670 (821)
...++ .+..+++|+.|++++|
T Consensus 190 --i~~l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 190 --ISDLR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp --CCBCG-GGTTCTTCSEEEEEEE
T ss_pred --CCCCh-hhccCCCCCEEECcCC
Confidence 22222 3677788888888764
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.8e-13 Score=136.68 Aligned_cols=148 Identities=23% Similarity=0.222 Sum_probs=96.6
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccccc-ccCCCCceEEeecCCCCccccHHHHhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSE-IENLSLLRYLKLNIPSLKSLPLSFFNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 566 (821)
-.++|+.|.+.++.... .+...|..+++|++|+|++|.++.+|.. +..+++|++|++++|.+..+|......+++
T Consensus 26 ~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKS----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCcEEEcCCCccCc----CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 44567777777766542 4445567777777788777777766543 567777777777777777766553227777
Q ss_pred ceEEecCCcccccchhh-hccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecc
Q 045113 567 LYTLDMPFSYIDHTADE-FWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
|++|++++|.+..+|.. +.++++|++|++++|.+.+..+..+..+++|+.|++.+|. - .+.+++|+.|+++.+
T Consensus 102 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~----~-~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP----W-DCTCPGIRYLSEWIN 175 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC----B-CCCTTTTHHHHHHHH
T ss_pred CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC----e-ecCCCCHHHHHHHHH
Confidence 77777777777777554 5677777777777777754444446666666666665531 0 234455555555554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=7.9e-13 Score=133.13 Aligned_cols=150 Identities=18% Similarity=0.264 Sum_probs=101.7
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccc-hhhhccCccCceeecCCc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHT-ADEFWKMKKLRHLNFGSI 598 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~ 598 (821)
+.++++++.++.+|..+. .+|++|++++|.+..+|. .+. .+++|++|+|++|.+..+ |..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578888888888887665 678888888888887776 455 788888888888888777 667888888888888888
Q ss_pred ccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCe
Q 045113 599 TLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSK 678 (821)
Q Consensus 599 ~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~ 678 (821)
.+. .+|..+ +..+++|+.|++++|. ++.
T Consensus 91 ~l~-~l~~~~---------------------f~~l~~L~~L~L~~N~------------------------------l~~ 118 (220)
T 2v9t_B 91 KIT-ELPKSL---------------------FEGLFSLQLLLLNANK------------------------------INC 118 (220)
T ss_dssp CCC-CCCTTT---------------------TTTCTTCCEEECCSSC------------------------------CCC
T ss_pred cCC-ccCHhH---------------------ccCCCCCCEEECCCCC------------------------------CCE
Confidence 874 344321 4445555555555541 111
Q ss_pred eEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccC
Q 045113 679 IILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYS 725 (821)
Q Consensus 679 l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 725 (821)
+....+..+++|+.|+|++|.++...+..+..+++|+.|+|++|.+.
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 11122334556666666677666555556777777777777766543
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.3e-13 Score=163.75 Aligned_cols=152 Identities=19% Similarity=0.098 Sum_probs=92.1
Q ss_pred CceeEEEEEcCCCcccccC--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEE
Q 045113 469 NVKRFFALEQQSDFAYLDD--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYL 546 (821)
Q Consensus 469 ~~~r~lsl~~~~~~~~~~~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L 546 (821)
..++++++..+........ ...+|+.+.+.+..........++..|..++.|++|+|++|.+..+|..+.++++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 4467777765544332222 44445554444332211011245677888899999999999988888888899999999
Q ss_pred eecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC
Q 045113 547 KLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 547 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~ 622 (821)
+|++|.+..+|..++ +|++|++|+|++|.+..+|..|++|++|++|+|++|.+ ..+|..++.+++|++|++..|
T Consensus 253 ~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 253 YLNGNSLTELPAEIK-NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp BCTTSCCSCCCGGGG-GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTS
T ss_pred EeeCCcCcccChhhh-CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCC
Confidence 999999999998888 99999999999998888898899999999999999988 577877877777777777664
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=131.14 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=102.4
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccH--HHHhccccceEEecCCcccccchh-hhccCccCceeecCC
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPL--SFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGS 597 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~ 597 (821)
+.++++++.++.+|..+.. .+++|+|++|.+..++. .+. .+++|++|++++|.+..++. .+.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGG-GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhc-cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5788888888888876643 56889999998887742 356 88889999998888888755 688888888888888
Q ss_pred cccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCC
Q 045113 598 ITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 677 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~ 677 (821)
|.+....+.. +..+++|+.|++++|. +.
T Consensus 91 N~l~~~~~~~----------------------~~~l~~L~~L~Ls~N~------------------------------l~ 118 (220)
T 2v70_A 91 NRLENVQHKM----------------------FKGLESLKTLMLRSNR------------------------------IT 118 (220)
T ss_dssp SCCCCCCGGG----------------------GTTCSSCCEEECTTSC------------------------------CC
T ss_pred CccCccCHhH----------------------hcCCcCCCEEECCCCc------------------------------CC
Confidence 8874433332 4445555555555541 11
Q ss_pred eeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC
Q 045113 678 KIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 678 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
.+....+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+..
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 1111223345666666666777666556677777777777777766544
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=1.5e-12 Score=149.03 Aligned_cols=186 Identities=16% Similarity=0.093 Sum_probs=122.2
Q ss_pred CCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceE
Q 045113 490 PHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYT 569 (821)
Q Consensus 490 ~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 569 (821)
.+++.|.+.++.... ++..+ +++|+.|+|++|.++.+| ..+++|++|++++|.+..+|. +. + +|++
T Consensus 59 ~~L~~L~Ls~n~L~~----lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~-~--~L~~ 124 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS----LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LP-A--SLKH 124 (571)
T ss_dssp TTCSEEECCSSCCSC----CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CC-T--TCCE
T ss_pred CCccEEEeCCCCCCc----cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hh-c--CCCE
Confidence 477888888776543 22222 378999999999999888 557899999999999998887 66 4 9999
Q ss_pred EecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecccccc
Q 045113 570 LDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGDLSYN 648 (821)
Q Consensus 570 L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 648 (821)
|++++|.+..+|. .+++|++|++++|.+.+ +|. .+++|++|++.+|. ..++. +. ++|+.|++++|.
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~--- 191 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL--- 191 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC---
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC---
Confidence 9999999888887 68899999999998854 665 45666666665531 11222 22 455555555541
Q ss_pred hhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCC
Q 045113 649 QSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGR 727 (821)
Q Consensus 649 ~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 727 (821)
...+|. +.. +| ....+.|+.|+|++|.++ .+|..+..+++|+.|+|++|.+.+.
T Consensus 192 L~~lp~-~~~--~L---------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 192 LESLPA-VPV--RN---------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CSSCCC-CC-------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCchhh-HHH--hh---------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 111111 100 00 011233477777777765 4566666777888888877776653
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=5.4e-15 Score=170.07 Aligned_cols=215 Identities=18% Similarity=0.131 Sum_probs=141.0
Q ss_pred cCCCCceEEeecCCCCccccHHHHhccccceEEecCCcc-cccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcce
Q 045113 538 ENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSY-IDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNF 616 (821)
Q Consensus 538 ~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~ 616 (821)
..+++|+.|+|++|.+..+|.+++ +|++|+.|++++|. +..+|..+. .+ ...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~------~~-----~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELE-SCKELQELEPENKWCLLTIILLMR------AL-----DPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHH------HH-----CTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHH-HHHHHHHhccccchhhhhHHHHHH------hc-----ccccCCHHHHHHHHhccc
Confidence 567788888888888888888888 88888888886662 222222111 11 111233444455555555
Q ss_pred eccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEe
Q 045113 617 ISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFS 696 (821)
Q Consensus 617 L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~ 696 (821)
|+... ...+.+|+.+.+.++ ....++. ..|+.|++++| .|+.+. .+..+++|+.|+|+
T Consensus 414 L~~l~--------~n~~~~L~~l~l~~n---~i~~l~~-----~~L~~L~Ls~n----~l~~lp--~~~~l~~L~~L~Ls 471 (567)
T 1dce_A 414 VDPMR--------AAYLDDLRSKFLLEN---SVLKMEY-----ADVRVLHLAHK----DLTVLC--HLEQLLLVTHLDLS 471 (567)
T ss_dssp HCGGG--------HHHHHHHHHHHHHHH---HHHHHHH-----TTCSEEECTTS----CCSSCC--CGGGGTTCCEEECC
T ss_pred Ccchh--------hcccchhhhhhhhcc---cccccCc-----cCceEEEecCC----CCCCCc--CccccccCcEeecC
Confidence 54111 001112222222222 2222222 24777888755 444432 26678899999999
Q ss_pred cccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce--eeccccccccceeEEeecCCC
Q 045113 697 NTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW--TMGTGAMPKLECLIINPCAYL 774 (821)
Q Consensus 697 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~i~~c~~l 774 (821)
+|.++ .+|..++++++|+.|+|++|.+++ ++ ..+.+++|+.|+|++| .+..+ |..++.+++|+.|++++|+.
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l- 545 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL- 545 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG-
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC-
Confidence 99987 678889999999999999998887 33 5788999999999998 56666 77888999999999999874
Q ss_pred CCCcccc----CCCCCCCEEEE
Q 045113 775 KKMPEQL----WCIKSLNNFNC 792 (821)
Q Consensus 775 ~~lp~~l----~~l~~L~~L~l 792 (821)
..+|... ..+|+|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 4444433 34788988863
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=4.2e-15 Score=171.04 Aligned_cols=178 Identities=21% Similarity=0.217 Sum_probs=106.3
Q ss_pred ccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCC--------------CccccHHHHhccccceEEe-cCCccccc
Q 045113 515 EMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPS--------------LKSLPLSFFNYLLNLYTLD-MPFSYIDH 579 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~--------------i~~lp~~i~~~L~~L~~L~-L~~~~l~~ 579 (821)
..++.|+.|+|++|.++.+|+.|++|++|+.|+++++. ....|..+. .+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhcccch
Confidence 56789999999999999999999999999999987663 224556666 788888887 55554444
Q ss_pred chh------hhcc--CccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhH
Q 045113 580 TAD------EFWK--MKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSL 651 (821)
Q Consensus 580 lp~------~i~~--l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 651 (821)
++. .+.. ...|+.|++++|.+.+ +|. ++.+++|+.|++.. |. ...
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~----------------------N~---l~~ 477 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSH----------------------NR---LRA 477 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCS----------------------SC---CCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCc----------------------cc---ccc
Confidence 332 1222 1257788888877743 554 55555554444443 31 112
Q ss_pred HHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCC-cccccCCCCCCEEEEeccccCC
Q 045113 652 LSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDP-MPALEKLPLLQVLKLKQNSYSG 726 (821)
Q Consensus 652 l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~ 726 (821)
+|..++.+++|+.|+|+.| .++.+. ++..+++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+.+
T Consensus 478 lp~~~~~l~~L~~L~Ls~N----~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDN----ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCGGGGGCTTCCEEECCSS----CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cchhhhcCCCCCEEECCCC----CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 2333334444444444332 222221 3445556666666666665544 5666666666666666665544
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.4e-12 Score=135.21 Aligned_cols=124 Identities=16% Similarity=0.100 Sum_probs=98.3
Q ss_pred hhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCce
Q 045113 513 ICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRH 592 (821)
Q Consensus 513 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~ 592 (821)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|. +. .+++|++|++++|.+..+|.... ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~-~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LK-DLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GT-TCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hc-cCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 3677888999999999888887 68888999999999999888887 77 89999999999998888876433 88999
Q ss_pred eecCCcccCCCCCCCcCCCCCcceeccccCC-cchhhhcCCCCCCCeEEEecc
Q 045113 593 LNFGSITLPAHPGNYCGSLENLNFISALYPC-CCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 593 L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 644 (821)
|++++|.+.. ++ .++.+++|+.|++..|. ..+.. +..+++|+.|++++|
T Consensus 111 L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~-l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 111 LFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGN 160 (263)
T ss_dssp EECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGG-GGGCTTCCEEECTTS
T ss_pred EEccCCccCC-Ch-hhcCcccccEEECCCCcCCCChH-HccCCCCCEEECCCC
Confidence 9999988854 44 48888999999888742 22334 677777777777776
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=9.5e-13 Score=143.34 Aligned_cols=122 Identities=18% Similarity=0.253 Sum_probs=67.6
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHh-ccccceEEecCCcccccchh-hhccCccCceeecCCc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFN-YLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSI 598 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~ 598 (821)
++++++++.++.+|..+. ..+++|+|++|.+..++..... ++++|++|+|++|.+..++. .+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665443 2466666666666666555433 56666666666666666643 4666666666666666
Q ss_pred ccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecc
Q 045113 599 TLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 599 ~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
.+....+..+..+++|++|++.+| .......+..+++|+.|++++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 664333334455555555555443 1111111555555555555554
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=2.8e-12 Score=129.92 Aligned_cols=127 Identities=21% Similarity=0.237 Sum_probs=74.4
Q ss_pred CCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 489 YPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 489 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.++|+.|.+.++.... ..+..|..+++|++|+|++|.++.+|. .+..+++|++|+|++|.+..+|......+++|
T Consensus 39 ~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 4566666666665542 334556666666666666666665553 34566666666666666666655432266666
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceecc
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISA 619 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~ 619 (821)
++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 6666666666666666666666666666666664332233444444444443
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=2.6e-12 Score=129.36 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=56.9
Q ss_pred ceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCccc-cHHHHhccccceEEecCCcccccchhh-hccCccCceeec
Q 045113 519 LLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSL-PLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNF 595 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L 595 (821)
.|+.|+|++|.++.+|. .+..+++|++|+|++|.+..+ |..+. .+++|++|+|++|.+..+|.. +..+++|++|+|
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 44444444444443332 344444444444444444433 33333 444444444444444444432 234444444444
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecc
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
++|.+....|..+..+++|++|++.+| ...+...+..+++|+.|++++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 444444333444444444444444442 1222222555566666666655
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=5.5e-12 Score=126.89 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=65.9
Q ss_pred eeEEEeCCCCCCccc--ccccCCCCceEEeecCCCCccccH-HHHhccccceEEecCCcccccchh-hhccCccCceeec
Q 045113 520 LRVLDLGSLVLNQYP--SEIENLSLLRYLKLNIPSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNF 595 (821)
Q Consensus 520 Lr~L~L~~~~l~~lp--~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L 595 (821)
+++|+|++|.++.++ ..+.++++|++|+|++|.+..++. .+. .+++|++|+|++|.+..+|. .+..+++|++|++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 455555555555442 224555555555555555554443 344 55555555555555555533 3455555555555
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccC--Ccc-hhhhcCCCCCCCeEEEecc
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYP--CCC-TKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~-~~~~l~~l~~L~~L~l~~~ 644 (821)
++|.+.+..|..+..+++|++|++..| ... +.. +..+++|+.|++++|
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCc
Confidence 555554444555555555555555553 122 233 666666666666665
No 123
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.32 E-value=5.9e-12 Score=139.73 Aligned_cols=257 Identities=16% Similarity=0.123 Sum_probs=153.8
Q ss_pred CCCeeechhhHHHHHHHH-hc---C-CCCceEEEE--EcCCCChHHHHHHHHhcCcccccc-----cc-eeEEEEcCCCC
Q 045113 166 NRDTVGLDDRMEELLDLL-IE---G-PPQLSAVTI--LDSIGLDKTAFAAEAYSGNYVKHY-----FD-CHAWVQEPYTC 232 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L-~~---~-~~~~~vi~i--~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~~s~~~ 232 (821)
...++||+.+++++.++| .. + ......+.| +|++|+||||||+.+++ +.... |+ .++|+.+....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCC
Confidence 367999999999999998 42 2 022445555 99999999999999998 33332 22 46788877777
Q ss_pred CHHHHHHHHHHHhCCch--------h-HHHHHHHhC--CCcEEEEEecCCCH--------HHHHHHHHhC---CCCC--C
Q 045113 233 YADQILDIIIKFLMPSS--------R-LIILHEYLM--TKRYLIVIDDVWSI--------EVWDIIREIL---PDNQ--N 288 (821)
Q Consensus 233 ~~~~~~~~i~~~l~~~~--------~-~~~l~~~l~--~kr~LlVlDdv~~~--------~~~~~l~~~l---~~~~--~ 288 (821)
+...+...++.+++... + ...+.+.+. +++++||+||++.. +.+..+...+ +... .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 88899999999886531 1 445555554 67999999999753 3333332222 2112 3
Q ss_pred CcEEEEEecchhhh-----------------------------cccc--cccCCcCCCCccchHHHHHHHcC------Cc
Q 045113 289 GSRVLITLAKIDTV-----------------------------TLFQ--FENGQNIRLDLVPTGGPLRVTYQ------GW 331 (821)
Q Consensus 289 gs~iiiTtr~~~v~-----------------------------~lf~--~~~~~~~~~~~~~~~~~i~~~c~------gl 331 (821)
...||+||+...+. ++|. +........--.+....|++.++ |.
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc
Confidence 45588888754421 1111 00000000111345678899999 99
Q ss_pred hHHHHHhhcc---------cccccchhccccc------hhHHHHhhhcCChhhHHHHhhcccCC--CCceechhhHHHHH
Q 045113 332 PFHILYHGSI---------SLEENKREAIAKP------IFLQSVAYCMLPFPLKLCCLYLPVFP--AHLEISTRQLYQLW 394 (821)
Q Consensus 332 PLai~~~g~~---------~~~~~~~~~i~~~------~~~l~~sy~~L~~~~k~cfl~~s~Fp--~~~~i~~~~Li~~W 394 (821)
|..+..+... .+.+. .+.+... ...+.-++..||.+.+.++..++.+. .+..+...++...|
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~-~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~ 337 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLS-EDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRY 337 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 9655544311 11111 1111100 03444566889999999998888653 33356666665544
Q ss_pred H--H---cCCCCCChHHHHHHHHHHHHhCCceeeeec
Q 045113 395 I--A---EGFIPDNSEATAEKYLEQLINRGFVEVKKR 426 (821)
Q Consensus 395 ~--a---eg~i~~~~~~~~~~~~~~L~~r~ll~~~~~ 426 (821)
. + .|. ..........+++.|.+.+++.....
T Consensus 338 ~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 338 EDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp HHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeecc
Confidence 2 2 232 11223456788999999999987643
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.9e-12 Score=121.55 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=82.7
Q ss_pred CCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcc-ccHHHHhccccc
Q 045113 489 YPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKS-LPLSFFNYLLNL 567 (821)
Q Consensus 489 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 567 (821)
.++++.|.+.++.... ...+..+..+++|++|++++|.++.+ ..++++++|++|++++|.+.. +|..+. .+++|
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCC
Confidence 4566677776665430 12234556777777777777777766 567777777777777777775 665555 67777
Q ss_pred eEEecCCcccccch--hhhccCccCceeecCCcccCCCCC---CCcCCCCCcceecc
Q 045113 568 YTLDMPFSYIDHTA--DEFWKMKKLRHLNFGSITLPAHPG---NYCGSLENLNFISA 619 (821)
Q Consensus 568 ~~L~L~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~~p---~~i~~l~~L~~L~~ 619 (821)
++|++++|.+..+| ..+..+++|++|++++|.+.+..+ ..++.+++|+.|++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 77777777777654 667777777777777777644332 24566666666654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=4.8e-12 Score=121.48 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=88.8
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCcc-ccHHHHhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKS-LPLSFFNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~~L~~ 566 (821)
..++|+.|.+.++.... ...+..+..+++|++|+|++|.++.+ ..++.+++|++|++++|.+.. +|..+. .+++
T Consensus 22 ~~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTT
T ss_pred CcccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHh-hCCC
Confidence 45667777777766430 12334467778888888888887766 667778888888888888776 666665 6888
Q ss_pred ceEEecCCcccccch--hhhccCccCceeecCCcccCCCCC---CCcCCCCCcceecccc
Q 045113 567 LYTLDMPFSYIDHTA--DEFWKMKKLRHLNFGSITLPAHPG---NYCGSLENLNFISALY 621 (821)
Q Consensus 567 L~~L~L~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~~p---~~i~~l~~L~~L~~~~ 621 (821)
|++|++++|.+..+| ..+..+++|++|++++|.+....+ ..+..+++|+.|++..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 888888888777765 577778888888888887743322 2455566666665544
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=6.9e-12 Score=127.06 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=49.8
Q ss_pred CceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhh-hccCccCceeec
Q 045113 518 KLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNF 595 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L 595 (821)
++|++|+|++|.++.+ |..+..+++|++|+|++|.+..+|......+++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4455555555555533 33445555555555555555555433221455555555555555555332 344555555555
Q ss_pred CCcccCCCCCCCcCCCCCcceecccc
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALY 621 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~ 621 (821)
++|.+. .+|..+..+++|++|++..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred cCCccc-ccCcccccCCCCCEEECCC
Confidence 555542 4444444444444444433
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=3.8e-12 Score=122.19 Aligned_cols=127 Identities=20% Similarity=0.116 Sum_probs=100.3
Q ss_pred ccCCceeEEEeCCCCCC--cccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCccccc-chhhhccCccCc
Q 045113 515 EMYKLLRVLDLGSLVLN--QYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDH-TADEFWKMKKLR 591 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~ 591 (821)
...+.|+.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+. .+++|++|++++|.+.. +|..+.++++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLP-KLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCC-CCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc-cCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34578999999999998 8998889999999999999999988 6777 99999999999998888 787788899999
Q ss_pred eeecCCcccCCCCC--CCcCCCCCcceeccccC--Ccchh---hhcCCCCCCCeEEEecc
Q 045113 592 HLNFGSITLPAHPG--NYCGSLENLNFISALYP--CCCTK---DLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 592 ~L~L~~~~~~~~~p--~~i~~l~~L~~L~~~~~--~~~~~---~~l~~l~~L~~L~l~~~ 644 (821)
+|++++|.+.. +| ..++.+++|++|++.+| ...+. ..+..+++|+.|++.+|
T Consensus 99 ~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999844 33 55666777777776663 12222 12566666666666665
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=2.4e-12 Score=120.97 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=87.0
Q ss_pred ccCCceeEEEeCCCCCC--cccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCccccc-chhhhccCccCc
Q 045113 515 EMYKLLRVLDLGSLVLN--QYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDH-TADEFWKMKKLR 591 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~l~~L~ 591 (821)
...+.|+.|++++|.++ .+|..++.+++|++|++++|.+..+ ..+. .+++|++|++++|.+.. +|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLP-KLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCC-CCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhh-cCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45588999999999998 8999889999999999999999988 6777 99999999999999888 788888899999
Q ss_pred eeecCCcccCCC-CCCCcCCCCCcceecccc
Q 045113 592 HLNFGSITLPAH-PGNYCGSLENLNFISALY 621 (821)
Q Consensus 592 ~L~L~~~~~~~~-~p~~i~~l~~L~~L~~~~ 621 (821)
+|++++|.+.+. .+..++.+++|++|++.+
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 999999998542 224455555555555544
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=7.4e-12 Score=136.23 Aligned_cols=174 Identities=18% Similarity=0.178 Sum_probs=117.9
Q ss_pred ceEEeecCCCCccccHHHHhccccceEEecCCcccccchhh-hc-cCccCceeecCCcccCCCCCCCcCCCCCcceeccc
Q 045113 543 LRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADE-FW-KMKKLRHLNFGSITLPAHPGNYCGSLENLNFISAL 620 (821)
Q Consensus 543 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~-~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~ 620 (821)
-+.++++++.+..+|..+. .+|+.|+|++|.+..++.. +. ++++|++|+|++|.+....+..+..+++|++|++.
T Consensus 20 ~~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 4689999999999997765 5689999999999999765 44 89999999999999966666678888888888888
Q ss_pred cC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEeccc---CCCCCcceEEE
Q 045113 621 YP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEY---VFPHSLTHLSF 695 (821)
Q Consensus 621 ~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~---~~~~~L~~L~L 695 (821)
+| ...+...+..+++|+.|++++|. .....+..+..+++|+.|+|+.| .+..+....+ ..+++|+.|+|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N----~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQN----QISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS----CCCSCCGGGTC----CTTCCEEEC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCC----cCCeeCHHHhcCcccCCcCCEEEC
Confidence 75 23333336777888888887773 22222445566666777666654 3333322222 34666666666
Q ss_pred ecccCCCCCcccccCCCC--CCEEEEeccccC
Q 045113 696 SNTDLMDDPMPALEKLPL--LQVLKLKQNSYS 725 (821)
Q Consensus 696 ~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~~ 725 (821)
++|.++...+..+..+++ |+.|+|.+|.+.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 666665544445555655 366666655543
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=9.7e-12 Score=120.39 Aligned_cols=126 Identities=11% Similarity=0.042 Sum_probs=92.2
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHH-Hhcccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSF-FNYLLN 566 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~~L~~ 566 (821)
.+++|+.|.+.++.... .+.+...+++|++|+|++|.++.+ ..++.+++|++|++++|.+..+|+.+ . .+++
T Consensus 17 ~~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ-ALPD 89 (176)
T ss_dssp CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH-HCTT
T ss_pred CcCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh-cCCC
Confidence 67788888888876652 233334445888888888888876 56888888888888888888887665 5 8888
Q ss_pred ceEEecCCcccccchh--hhccCccCceeecCCcccCCCCCCC----cCCCCCcceecccc
Q 045113 567 LYTLDMPFSYIDHTAD--EFWKMKKLRHLNFGSITLPAHPGNY----CGSLENLNFISALY 621 (821)
Q Consensus 567 L~~L~L~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~~----i~~l~~L~~L~~~~ 621 (821)
|++|++++|.+..+|. .+..+++|++|++++|.+. .+|.. +..+++|+.|++..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 8888888888888876 7788888888888888874 44543 44444555544433
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=4.5e-11 Score=117.47 Aligned_cols=121 Identities=19% Similarity=0.204 Sum_probs=86.7
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccch-hhhccCccCceeecCCcc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSIT 599 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~ 599 (821)
++++++++.++.+|..+. .+|++|++++|.+..+|..+. .+++|++|++++|.+..++ ..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 567777777777776553 577888888888877777777 7888888888888777775 357778888888888887
Q ss_pred cCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecc
Q 045113 600 LPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 600 ~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~ 644 (821)
+....|..+..+++|++|++..| ...+...+..+++|+.|++++|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 76655566777777777777764 2333333667777777777766
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=2.9e-11 Score=129.79 Aligned_cols=285 Identities=12% Similarity=0.027 Sum_probs=179.4
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhcc-CCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhc---
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEM-YKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNY--- 563 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~--- 563 (821)
..++++.|.+.+.-.. .... .+.. +++|++|||++|.+..+...-+.++.++++.+..+ .+|......
T Consensus 23 ~~~~l~~L~l~g~i~~----~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA----EDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEEEECH----HHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEET
T ss_pred hhCceeEEEEeccccH----HHHH-HHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccc
Confidence 4567888888765321 1222 3333 88999999999998722221223334566666555 344443336
Q ss_pred -----cccceEEecCCcccccchh-hhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC------CcchhhhcC
Q 045113 564 -----LLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP------CCCTKDLLG 631 (821)
Q Consensus 564 -----L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~------~~~~~~~l~ 631 (821)
+++|+.|+|.+ .+..++. .|..|++|+.|++++|.+....+..+..+.++..+....+ ......++.
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 89999999998 8888855 6888999999999998875545556777777776664431 011111144
Q ss_pred CCCCCC-eEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecc-cCCCCCcceEEEecccCCCCCccccc
Q 045113 632 RLPNLR-NLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAE-YVFPHSLTHLSFSNTDLMDDPMPALE 709 (821)
Q Consensus 632 ~l~~L~-~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~-~~~~~~L~~L~L~~~~l~~~~~~~l~ 709 (821)
++.+|+ .+.+.... .....+...-....++..+.+.+.+ ....... ...+++|+.|+|++|.++......+.
T Consensus 174 ~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l-----~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKL-----DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp ESCCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECC-----CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccceeEEecCCC-cHHHHHhhcccCccccceEEEeeee-----cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 556666 44444331 1111111111234455555555321 1000000 11378999999999887766666789
Q ss_pred CCCCCCEEEEeccccCCCeeeecCCCCcccc-eeeeccCCCcccee-eccccccccceeEEeecCCCCCCcc-ccCCCCC
Q 045113 710 KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLK-VLHLKSMLWLEEWT-MGTGAMPKLECLIINPCAYLKKMPE-QLWCIKS 786 (821)
Q Consensus 710 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~-~~~~~l~~L~~L~i~~c~~l~~lp~-~l~~l~~ 786 (821)
+|++|+.|.|.+| +. ......+.++++|+ .+.+.+ .+..+. ..+..|++|+.|++.++. ++.++. .+.++++
T Consensus 248 ~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVP 322 (329)
T ss_dssp TCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCC
T ss_pred CCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcc
Confidence 9999999999865 32 23334467788898 999987 577775 457889999999987664 566654 7889999
Q ss_pred CCEEEE
Q 045113 787 LNNFNC 792 (821)
Q Consensus 787 L~~L~l 792 (821)
|+.|..
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 998863
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=3.8e-11 Score=117.99 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=85.6
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHH--HHhccccceEEecCCcccccc-hhhhccCccCceeecCC
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLS--FFNYLLNLYTLDMPFSYIDHT-ADEFWKMKKLRHLNFGS 597 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~ 597 (821)
++|+++++.++.+|..+.. +|++|++++|.+..+|.. +. .+++|++|+|++|.+..+ |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccc-cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6778888877777766544 778888888887777653 66 788888888888877776 56777788888888888
Q ss_pred cccCCCCCCCcCCCCCcceeccccC--Ccc-hhhhcCCCCCCCeEEEecc
Q 045113 598 ITLPAHPGNYCGSLENLNFISALYP--CCC-TKDLLGRLPNLRNLRIQGD 644 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~~--~~~-~~~~l~~l~~L~~L~l~~~ 644 (821)
|.+.+..|..++.+++|++|++.+| ... +.. +..+++|+.|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCC
Confidence 8776655566777777777777664 222 333 666777777777766
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=1.1e-11 Score=119.91 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=103.9
Q ss_pred hccCCceeEEEeCCCCCCcccccccCCC-CceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhh-ccCccCc
Q 045113 514 CEMYKLLRVLDLGSLVLNQYPSEIENLS-LLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEF-WKMKKLR 591 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~l~~L~ 591 (821)
+..+..|+.|++++|.++.+|. +..+. +|++|++++|.+..+ ..+. .+++|++|++++|.+..+|+.+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccc-cCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 5678899999999999998865 55555 999999999999988 5777 9999999999999999998655 8999999
Q ss_pred eeecCCcccCCCCCC--CcCCCCCcceeccccC--Ccchhh---hcCCCCCCCeEEEeccc
Q 045113 592 HLNFGSITLPAHPGN--YCGSLENLNFISALYP--CCCTKD---LLGRLPNLRNLRIQGDL 645 (821)
Q Consensus 592 ~L~L~~~~~~~~~p~--~i~~l~~L~~L~~~~~--~~~~~~---~l~~l~~L~~L~l~~~~ 645 (821)
+|++++|.+ +.+|. .++.+++|+.|++.+| ...+.. .+..+++|+.|+++.+.
T Consensus 92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999998 55665 6778888888888774 222221 26677888888887763
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2.9e-12 Score=152.04 Aligned_cols=118 Identities=24% Similarity=0.155 Sum_probs=104.9
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.++.|+.|.+.++.... ++..++ .+++|++|+|++|.++.+|..|++|++|++|+|++|.|..+|..++ +|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~~----l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN----ISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSCCSC----CCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG-GGTTC
T ss_pred cCCCCcEEECCCCCCCC----CChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc-CCCCC
Confidence 78899999999888753 333344 8999999999999999999999999999999999999999999999 99999
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCC
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSL 611 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l 611 (821)
++|+|++|.+..+|..|++|++|++|+|++|.+.+.+|..+..+
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999999999999999999999999999987777655443
No 136
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.17 E-value=2.2e-10 Score=123.89 Aligned_cols=253 Identities=11% Similarity=0.048 Sum_probs=150.1
Q ss_pred CCCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC------CHHHH
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC------YADQI 237 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------~~~~~ 237 (821)
.....++||+.+++++.+++..+ +++.|+|++|+|||||++.+.+. . . .+|+.+.... +...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 34567999999999999998763 69999999999999999999973 2 1 6777765432 55666
Q ss_pred HHHHHHHhCC-------------------c---hh----HHHHHHHhCC-CcEEEEEecCCCH---------HHHHHHHH
Q 045113 238 LDIIIKFLMP-------------------S---SR----LIILHEYLMT-KRYLIVIDDVWSI---------EVWDIIRE 281 (821)
Q Consensus 238 ~~~i~~~l~~-------------------~---~~----~~~l~~~l~~-kr~LlVlDdv~~~---------~~~~~l~~ 281 (821)
.+.+...+.. . .. ...+.+.... ++.+||+||++.. ..+..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666665432 0 11 2233333322 3899999999652 22343433
Q ss_pred hCCCCCCCcEEEEEecchhh-hc----------cc-------c---cccCCc-----------CCCCccchHHHHHHHcC
Q 045113 282 ILPDNQNGSRVLITLAKIDT-VT----------LF-------Q---FENGQN-----------IRLDLVPTGGPLRVTYQ 329 (821)
Q Consensus 282 ~l~~~~~gs~iiiTtr~~~v-~~----------lf-------~---~~~~~~-----------~~~~~~~~~~~i~~~c~ 329 (821)
.... ..+.++|+|++.... .+ ++ . |...+. ...--.+.+..|+..++
T Consensus 158 ~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tg 236 (350)
T 2qen_A 158 AYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLD 236 (350)
T ss_dssp HHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHT
T ss_pred HHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 2222 247889999876532 11 11 0 110000 00011245678999999
Q ss_pred CchHHHHHhhccccc---cc-----chhccccchhHHHHhhhcC---ChhhHHHHhhcccCCCCceechhhHHHHHHHcC
Q 045113 330 GWPFHILYHGSISLE---EN-----KREAIAKPIFLQSVAYCML---PFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEG 398 (821)
Q Consensus 330 glPLai~~~g~~~~~---~~-----~~~~i~~~~~~l~~sy~~L---~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg 398 (821)
|.|+++..++...|. .. ..+.+. ..+.-.+..+ ++..+..+..+|. + .++...+.....+..
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK---GLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG 309 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhccccHhHHHHHHHHHHH---HHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh
Confidence 999999998843221 11 011111 2222223333 7778888888887 2 245566655543221
Q ss_pred CCCCChHHHHHHHHHHHHhCCceeeeecCCCCCEEEEEeC-cchHHH
Q 045113 399 FIPDNSEATAEKYLEQLINRGFVEVKKRRAGGTINTCSIR-SRCWPS 444 (821)
Q Consensus 399 ~i~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~mH-dlv~dl 444 (821)
. .........+++.|.+.+++.... ..|.++ .+++++
T Consensus 310 -~-~~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~ 347 (350)
T 2qen_A 310 -T-KIPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATV 347 (350)
T ss_dssp -C-CCCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHH
T ss_pred -C-CCCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHH
Confidence 0 112455678999999999998752 135554 455554
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=7e-11 Score=116.04 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=80.4
Q ss_pred ceeEEEeCCCCCCccccc--ccCCCCceEEeecCCCCccc-cHHHHhccccceEEecCCcccccchh-hhccCccCceee
Q 045113 519 LLRVLDLGSLVLNQYPSE--IENLSLLRYLKLNIPSLKSL-PLSFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLN 594 (821)
Q Consensus 519 ~Lr~L~L~~~~l~~lp~~--i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~ 594 (821)
.|++|+|++|.++.++.. ++.+++|++|+|++|.+..+ |..+. .+++|++|+|++|.+..++. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 778888888888777653 77888888888888888766 55666 88888888888888777754 477788888888
Q ss_pred cCCcccCCCCCCCcCCCCCcceeccccC
Q 045113 595 FGSITLPAHPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 595 L~~~~~~~~~p~~i~~l~~L~~L~~~~~ 622 (821)
+++|.+.+..|..++.+++|++|++.+|
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 8888887777777888888888887664
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=112.91 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=80.9
Q ss_pred CceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHH-HHhccccceEEecCCcccccchh-hhccCccCceeec
Q 045113 518 KLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLS-FFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNF 595 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L 595 (821)
+.|++|+|++|.++.+|..+.++++|++|+|++|.+..++.. +. .+++|++|+|++|.+..+|. .+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 478888888888888888888888888888888888877654 55 88888888888888877754 5778888888888
Q ss_pred CCcccCCCCCCCcCCCCCcceeccccC
Q 045113 596 GSITLPAHPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 596 ~~~~~~~~~p~~i~~l~~L~~L~~~~~ 622 (821)
++|.+....+..+..+++|+.|++..|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCC
Confidence 888885444445778888888887664
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=8.4e-12 Score=123.36 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=69.5
Q ss_pred HHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccC
Q 045113 511 QKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKL 590 (821)
Q Consensus 511 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L 590 (821)
+..+..+++|++|+|++|.++.+| .+.++++|++|++++|.+..+|..+. .+++|++|++++|.+..+| .+..+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDA-VADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHH-HHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhh-cCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 346778888888888888887777 77778888888888888888887776 7788888888888777776 57778888
Q ss_pred ceeecCCcccC
Q 045113 591 RHLNFGSITLP 601 (821)
Q Consensus 591 ~~L~L~~~~~~ 601 (821)
++|++++|.+.
T Consensus 118 ~~L~l~~N~i~ 128 (198)
T 1ds9_A 118 RVLYMSNNKIT 128 (198)
T ss_dssp SEEEESEEECC
T ss_pred CEEECCCCcCC
Confidence 88888887763
No 140
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.09 E-value=3.8e-10 Score=122.36 Aligned_cols=249 Identities=14% Similarity=0.105 Sum_probs=142.8
Q ss_pred CCCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCC-----CCHHHHHH
Q 045113 165 KNRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYT-----CYADQILD 239 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~ 239 (821)
....++||+.+++.+.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+.+... .+...+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 45679999999999999 654 59999999999999999999973 332 2578877642 34444444
Q ss_pred HHHHHhCC---------------------------------chhHHHHHHHhCC---CcEEEEEecCCCH-----HH-HH
Q 045113 240 IIIKFLMP---------------------------------SSRLIILHEYLMT---KRYLIVIDDVWSI-----EV-WD 277 (821)
Q Consensus 240 ~i~~~l~~---------------------------------~~~~~~l~~~l~~---kr~LlVlDdv~~~-----~~-~~ 277 (821)
.+...+.. ......+.+.+.. ++++||+||++.. .+ +.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 44433210 0112333333321 4999999999542 12 23
Q ss_pred HHHHhCCCCCCCcEEEEEecchhhh-c----------cc----c------cccCCc----------CCCCccchHHHHHH
Q 045113 278 IIREILPDNQNGSRVLITLAKIDTV-T----------LF----Q------FENGQN----------IRLDLVPTGGPLRV 326 (821)
Q Consensus 278 ~l~~~l~~~~~gs~iiiTtr~~~v~-~----------lf----~------~~~~~~----------~~~~~~~~~~~i~~ 326 (821)
.+.... +...+.++|+|++..... + ++ . |...+. ......+ ...|+.
T Consensus 160 ~l~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~ 237 (357)
T 2fna_A 160 ALAYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYE 237 (357)
T ss_dssp HHHHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHH
T ss_pred HHHHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHH
Confidence 332222 112368899999875421 1 11 0 100000 0011112 278999
Q ss_pred HcCCchHHHHHhhccccccc--------chhccccchhHHH-----Hhhh--cCChhhHHHHhhcccCCCCceechhhHH
Q 045113 327 TYQGWPFHILYHGSISLEEN--------KREAIAKPIFLQS-----VAYC--MLPFPLKLCCLYLPVFPAHLEISTRQLY 391 (821)
Q Consensus 327 ~c~glPLai~~~g~~~~~~~--------~~~~i~~~~~~l~-----~sy~--~L~~~~k~cfl~~s~Fp~~~~i~~~~Li 391 (821)
.|+|.|+++..++...+.-. ..+.+. ..+. +.+. .||+..+..+..+|. +. +...+.
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~ 309 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK---KLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVK 309 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHH
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHH
Confidence 99999999998884322100 001111 1121 1111 578889999999987 22 445554
Q ss_pred HHHH-HcCC-CCCChHHHHHHHHHHHHhCCceeeeecCCCCCEEEEEe-CcchHHH
Q 045113 392 QLWI-AEGF-IPDNSEATAEKYLEQLINRGFVEVKKRRAGGTINTCSI-RSRCWPS 444 (821)
Q Consensus 392 ~~W~-aeg~-i~~~~~~~~~~~~~~L~~r~ll~~~~~~~~~~~~~~~m-Hdlv~dl 444 (821)
...- ..|. + .......+++.|++.+++.... + .|++ |.++++.
T Consensus 310 ~~~~~~~g~~~---~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 310 RALELEEGIEI---SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHCSCC---CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred HHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 3321 1232 2 1345678999999999998653 1 2454 5566653
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=6e-10 Score=107.72 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=38.5
Q ss_pred CceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccchhh-hccCccCceeec
Q 045113 518 KLLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNF 595 (821)
Q Consensus 518 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L 595 (821)
+.|+.|++++|.++.+|. .++.+++|++|++++|.+..+|......+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 344555555555444332 234445555555555555444433211445555555555544444332 344455555555
Q ss_pred CCccc
Q 045113 596 GSITL 600 (821)
Q Consensus 596 ~~~~~ 600 (821)
++|.+
T Consensus 108 ~~N~l 112 (177)
T 2o6r_A 108 DTNQL 112 (177)
T ss_dssp CSSCC
T ss_pred cCCcc
Confidence 55444
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=4.9e-10 Score=108.33 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=102.0
Q ss_pred EEEEcCCCcccccCCCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccccc-ccCCCCceEEeecCCC
Q 045113 474 FALEQQSDFAYLDDYYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSE-IENLSLLRYLKLNIPS 552 (821)
Q Consensus 474 lsl~~~~~~~~~~~~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~ 552 (821)
+..........+..-.++|++|.+.++.... .+...|..+++|++|+|++|.++.+|.. ++.+++|++|++++|.
T Consensus 12 l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 12 IRCNSKGLTSVPTGIPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EECCSSCCSSCCTTCCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCCCccCCCCCCCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3344333333322255799999999887653 5566789999999999999999988754 6899999999999999
Q ss_pred CccccHHHHhccccceEEecCCcccccchhh-hccCccCceeecCCcccCCCC
Q 045113 553 LKSLPLSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNFGSITLPAHP 604 (821)
Q Consensus 553 i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~~~~ 604 (821)
+..+|......+++|++|++++|.+..+|.. +..+++|++|++++|.+....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 9988876433899999999999999999876 477999999999999886543
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.99 E-value=1.8e-08 Score=110.40 Aligned_cols=255 Identities=15% Similarity=0.053 Sum_probs=152.7
Q ss_pred CCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCcccccc------cceeEEEEcCCCCCHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY------FDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~s~~~~~~~~~ 238 (821)
..++||+.+++++..++... ......+.|+|++|+||||+|+.+++ ..... --..+|+.+....+...+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 67999999999999998543 34467899999999999999999998 33221 1246788888888888999
Q ss_pred HHHHHHhCCch--------h-HHHHHHHhC--CCcEEEEEecCCCHH----HHHHHH---HhCCCC--CCCcEEEEEecc
Q 045113 239 DIIIKFLMPSS--------R-LIILHEYLM--TKRYLIVIDDVWSIE----VWDIIR---EILPDN--QNGSRVLITLAK 298 (821)
Q Consensus 239 ~~i~~~l~~~~--------~-~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~l~---~~l~~~--~~gs~iiiTtr~ 298 (821)
..++.+++... + ...+.+.+. +++.+||||+++... ..+.+. ...... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999886531 1 455555663 568999999997542 223332 222111 345678888876
Q ss_pred hhhh---------------------------cccc--cccCCcCCCCccchHHHHHHHcC---Cch-HHHHHhhcc----
Q 045113 299 IDTV---------------------------TLFQ--FENGQNIRLDLVPTGGPLRVTYQ---GWP-FHILYHGSI---- 341 (821)
Q Consensus 299 ~~v~---------------------------~lf~--~~~~~~~~~~~~~~~~~i~~~c~---glP-Lai~~~g~~---- 341 (821)
.... +++. +........--.+..+.+++.++ |.| .|+.++...
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 6332 1111 00000001111334567777787 888 333333210
Q ss_pred ---c-ccccchhcccc-----chhHHHHhhhcCChhhHHHHhhcc-cCCCCceechhhHHHHH----HHcCCCCCChHHH
Q 045113 342 ---S-LEENKREAIAK-----PIFLQSVAYCMLPFPLKLCCLYLP-VFPAHLEISTRQLYQLW----IAEGFIPDNSEAT 407 (821)
Q Consensus 342 ---~-~~~~~~~~i~~-----~~~~l~~sy~~L~~~~k~cfl~~s-~Fp~~~~i~~~~Li~~W----~aeg~i~~~~~~~ 407 (821)
. ..+. .+.+.. ....+.-++..||.+.+..++..+ ++.....+...++.+.. -..| ..+.....
T Consensus 257 ~~~~~~~i~-~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (387)
T 2v1u_A 257 ERRREERVR-REHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHVTLRR 334 (387)
T ss_dssp HHTTCSCBC-HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCCCHHH
T ss_pred HHcCCCCcC-HHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCCCHHH
Confidence 0 1111 111110 013445566889988877666555 44322355566444432 2334 33344567
Q ss_pred HHHHHHHHHhCCceeeee
Q 045113 408 AEKYLEQLINRGFVEVKK 425 (821)
Q Consensus 408 ~~~~~~~L~~r~ll~~~~ 425 (821)
...+++.|...+++....
T Consensus 335 ~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 335 VSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhCCCeEEEe
Confidence 788999999999999864
No 144
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.99 E-value=1.8e-08 Score=110.54 Aligned_cols=256 Identities=14% Similarity=0.057 Sum_probs=156.5
Q ss_pred CCeeechhhHHHHHHHHhcC----CCCceEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEcCCCCCHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEG----PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF-DCHAWVQEPYTCYADQILDII 241 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i 241 (821)
..++||+.+++++.+++... .+..+.+.|+|.+|+||||||+.+.+ ...... ...+|+.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999998762 22234899999999999999999997 343321 246788888888888999999
Q ss_pred HHHhCCch-------h--HHHHHHHh--CCCcEEEEEecCCC--HHHHHHHHHhCCCCC----CCcEEEEEecchhhhc-
Q 045113 242 IKFLMPSS-------R--LIILHEYL--MTKRYLIVIDDVWS--IEVWDIIREILPDNQ----NGSRVLITLAKIDTVT- 303 (821)
Q Consensus 242 ~~~l~~~~-------~--~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~----~gs~iiiTtr~~~v~~- 303 (821)
+..++... . ...+.+.+ .+++.+||||+++. ...+..+...+.... .+..||+||+......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 88876421 1 33444444 35789999999965 455666666654322 4678888887664330
Q ss_pred ------------ccccccCCc----------------CCCCccchHHHHHHHc---------CCchHHHHHhhc------
Q 045113 304 ------------LFQFENGQN----------------IRLDLVPTGGPLRVTY---------QGWPFHILYHGS------ 340 (821)
Q Consensus 304 ------------lf~~~~~~~----------------~~~~~~~~~~~i~~~c---------~glPLai~~~g~------ 340 (821)
.+.|..-.. ...--.+..+.+++.+ .|.|-.+..+..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 011111000 0011123556778888 687644333321
Q ss_pred ---ccccccchhccccc-----hhHHHHhhhcCChhhHHHHhhcccCC---CCceechhhHHHHHHH----cCCCCCChH
Q 045113 341 ---ISLEENKREAIAKP-----IFLQSVAYCMLPFPLKLCCLYLPVFP---AHLEISTRQLYQLWIA----EGFIPDNSE 405 (821)
Q Consensus 341 ---~~~~~~~~~~i~~~-----~~~l~~sy~~L~~~~k~cfl~~s~Fp---~~~~i~~~~Li~~W~a----eg~i~~~~~ 405 (821)
..+.+. .+.+... ...+.-.+..||.+.+.++..++.+. .+..+....+...+.. .|.. +-..
T Consensus 255 ~~~~~~~i~-~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 332 (389)
T 1fnn_A 255 QQNGRKHIA-PEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER-PRVH 332 (389)
T ss_dssp HHTTCSSCC-HHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-CCCH
T ss_pred HHhCCCCcC-HHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC-CCCH
Confidence 111111 1111100 03334456788888887777676544 2225666677665533 3422 2223
Q ss_pred HHHHHHHHHHHhCCceeeeec
Q 045113 406 ATAEKYLEQLINRGFVEVKKR 426 (821)
Q Consensus 406 ~~~~~~~~~L~~r~ll~~~~~ 426 (821)
.....++++|.+.+++.....
T Consensus 333 ~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 333 SQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHHHhCCCeEEeee
Confidence 456789999999999998654
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=1.9e-11 Score=120.73 Aligned_cols=111 Identities=19% Similarity=0.138 Sum_probs=98.3
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccccccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
.+++|++|.+.++.... + + .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+..+| .+. .+++|
T Consensus 46 ~l~~L~~L~ls~n~l~~----l-~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~-~l~~L 117 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK----I-S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE-KLVNL 117 (198)
T ss_dssp HTTTCSEEECSEEEESC----C-C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH-HHHHS
T ss_pred cCCCCCEEECCCCCCcc----c-c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc-cCCCC
Confidence 78999999999887653 2 2 778899999999999999999988888899999999999999988 688 99999
Q ss_pred eEEecCCcccccchh--hhccCccCceeecCCcccCCCCCC
Q 045113 568 YTLDMPFSYIDHTAD--EFWKMKKLRHLNFGSITLPAHPGN 606 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~--~i~~l~~L~~L~L~~~~~~~~~p~ 606 (821)
++|++++|.+..+|. .+..+++|++|++++|.+.+..|.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999998865 789999999999999998665554
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.96 E-value=1.4e-08 Score=111.13 Aligned_cols=254 Identities=14% Similarity=0.019 Sum_probs=149.1
Q ss_pred CCeeechhhHHHHHHHHhc--CCCCceEEEEEcCCCChHHHHHHHHhcCcccccc--------cceeEEEEcCCCC-CHH
Q 045113 167 RDTVGLDDRMEELLDLLIE--GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY--------FDCHAWVQEPYTC-YAD 235 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~--~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~s~~~-~~~ 235 (821)
..++||+.+++++.+++.. .....+.+.|+|++|+||||||+.+++ +.... ....+|+.++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865 233466899999999999999999998 33221 2356788777766 788
Q ss_pred HHHHHHHHHhCCc---------hh-HHHHHHHhCCCcEEEEEecCCCHHH---HHH-HHHhCCCCCCCcEEEEEecchhh
Q 045113 236 QILDIIIKFLMPS---------SR-LIILHEYLMTKRYLIVIDDVWSIEV---WDI-IREILPDNQNGSRVLITLAKIDT 301 (821)
Q Consensus 236 ~~~~~i~~~l~~~---------~~-~~~l~~~l~~kr~LlVlDdv~~~~~---~~~-l~~~l~~~~~gs~iiiTtr~~~v 301 (821)
.+...++.++... .+ ...+.+.+..++.+|||||++.... .+. +...+... .+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 8888888887211 11 5667777777666999999975421 222 22222222 67889999987632
Q ss_pred h--------------------------cccc--cccCCcCCCCccchHHHHHHHcC---CchH-HHHHhh---cccc---
Q 045113 302 V--------------------------TLFQ--FENGQNIRLDLVPTGGPLRVTYQ---GWPF-HILYHG---SISL--- 343 (821)
Q Consensus 302 ~--------------------------~lf~--~~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g---~~~~--- 343 (821)
. ++|. +...-....--.+..+.+++.++ |-|- |+..+. ....
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 1 1111 10000001111334567777777 7765 333332 1111
Q ss_pred cccchhcccc-----chhHHHHhhhcCChhhHHHHhhcccCCCCceechhhHHHHHHHcCCCCCChHHHHHHHHHHHHhC
Q 045113 344 EENKREAIAK-----PIFLQSVAYCMLPFPLKLCCLYLPVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKYLEQLINR 418 (821)
Q Consensus 344 ~~~~~~~i~~-----~~~~l~~sy~~L~~~~k~cfl~~s~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~L~~r 418 (821)
.+ ..+.+.. ....+.-++..|+.+.|..+..++....+-.+. +......-..| +.+........++..|...
T Consensus 257 ~i-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~ 333 (384)
T 2qby_B 257 II-RKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISELDMF 333 (384)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHHHHHT
T ss_pred cc-CHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhC
Confidence 11 1111110 013455667889988777666565511101111 11112222344 2233345677899999999
Q ss_pred Cceeeeec
Q 045113 419 GFVEVKKR 426 (821)
Q Consensus 419 ~ll~~~~~ 426 (821)
+++.....
T Consensus 334 gli~~~~~ 341 (384)
T 2qby_B 334 GIVKIRII 341 (384)
T ss_dssp TSEEEEEE
T ss_pred CCEEEEec
Confidence 99987654
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=1.2e-08 Score=111.97 Aligned_cols=262 Identities=12% Similarity=0.103 Sum_probs=153.5
Q ss_pred CCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcccc-cccCCCCceEEeecCCCCccccHHHHhccccc
Q 045113 489 YPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYPS-EIENLSLLRYLKLNIPSLKSLPLSFFNYLLNL 567 (821)
Q Consensus 489 ~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 567 (821)
+..+.++.+...-.. +...+|..+ +|+.+.|..+ ++.++. .+.+ .+|+.+.+.. .+..++......|.+|
T Consensus 112 ~~~l~~i~ip~~i~~-----I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNSVKS-----IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTTCCE-----ECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCccCE-----ehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 344555554433221 334455554 5777776654 554443 3444 3577777665 4555554333366777
Q ss_pred eEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEeccccc
Q 045113 568 YTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSY 647 (821)
Q Consensus 568 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 647 (821)
+.+++.++.+..+|.....+.+|+.+.+..+ + ..++ ..++.+|++|+.+.+..+-.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~---------------------~~aF~~~~~L~~l~l~~~l~- 238 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-L-KEIG---------------------SQAFLKTSQLKTIEIPENVS- 238 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT-C-CEEC---------------------TTTTTTCTTCCCEECCTTCC-
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc-h-heeh---------------------hhHhhCCCCCCEEecCCCcc-
Confidence 7777776666666655444566666665432 2 1121 11255555555555543210
Q ss_pred chhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCC-----CCCcccccCCCCCCEEEEecc
Q 045113 648 NQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLM-----DDPMPALEKLPLLQVLKLKQN 722 (821)
Q Consensus 648 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~ 722 (821)
..+ ...+.. .+|+.+.+.. +++.+.-..+..|++|+.+.+.++.+. ......+.+|++|+.+.|. +
T Consensus 239 ~I~--~~aF~~-~~L~~i~lp~-----~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 239 TIG--QEAFRE-SGITTVKLPN-----GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp EEC--TTTTTT-CCCSEEEEET-----TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred Ccc--cccccc-CCccEEEeCC-----CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 000 112333 5778887753 466666666788899999999887653 1334567889999999998 4
Q ss_pred ccCCCeeeecCCCCcccceeeeccCCCccceee-ccccccccceeEEeecCCCCCCccccCCCC-CCCEEEEeCCc
Q 045113 723 SYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM-GTGAMPKLECLIINPCAYLKKMPEQLWCIK-SLNNFNCWWPQ 796 (821)
Q Consensus 723 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~i~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 796 (821)
.+.. .....+.++++|+.+.|.. ++..+.. .+..+ +|+.|.+.++....-.+..+.+++ ++..|.+-.-.
T Consensus 310 ~i~~-I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 310 SIRI-LGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TCCE-ECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ceEE-EhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3322 2233466788999999965 3666643 46677 999999998753332234566664 78888875433
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=1.9e-09 Score=103.37 Aligned_cols=99 Identities=22% Similarity=0.217 Sum_probs=71.2
Q ss_pred eeEEEeCCCCCCcccccccCCCCceEEeecCCCCcccc-HHHHhccccceEEecCCcccccchhh-hccCccCceeecCC
Q 045113 520 LRVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNFGS 597 (821)
Q Consensus 520 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~ 597 (821)
.++|+++++.++.+|..+. .+|++|+|++|.+..++ ..+. .+++|++|+|++|.+..+|.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4678888888888887663 77888888888888774 4466 788888888888888888664 46788888888888
Q ss_pred cccCCCCCCCcCCCCCcceecccc
Q 045113 598 ITLPAHPGNYCGSLENLNFISALY 621 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~ 621 (821)
|.+....+..+..+++|++|++.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCC
Confidence 887544334455555555555544
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=2.3e-09 Score=103.20 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=59.9
Q ss_pred eEEEeCCCCCCcccccccCCCCceEEeecCCCCcccc-HHHHhccccceEEecCCcccccchhh-hccCccCceeecCCc
Q 045113 521 RVLDLGSLVLNQYPSEIENLSLLRYLKLNIPSLKSLP-LSFFNYLLNLYTLDMPFSYIDHTADE-FWKMKKLRHLNFGSI 598 (821)
Q Consensus 521 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~ 598 (821)
+.++++++.++.+|..+. ++|++|+|++|.+..++ ..+. ++++|++|+|++|.+..+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 566777777766666554 66777777777776553 3445 677777777777777666654 356777777777777
Q ss_pred ccCCCCCCCcCCCCCcceecccc
Q 045113 599 TLPAHPGNYCGSLENLNFISALY 621 (821)
Q Consensus 599 ~~~~~~p~~i~~l~~L~~L~~~~ 621 (821)
.+....+..+..+++|++|++.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS
T ss_pred ccceeCHHHhccccCCCEEEeCC
Confidence 66432222344555555554444
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=2.7e-08 Score=109.16 Aligned_cols=239 Identities=14% Similarity=0.158 Sum_probs=151.6
Q ss_pred ccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccch-hhhccCccCce
Q 045113 515 EMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRH 592 (821)
Q Consensus 515 ~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~ 592 (821)
..+..++.+.+... ++.++ ..+.++ +|+.+.+..+ +..++.....+ .+|+.+.+.. .+..++ ..|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34455555555442 44443 234443 6777777654 66665544413 4677777765 455553 45667777777
Q ss_pred eecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCC
Q 045113 593 LNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESK 672 (821)
Q Consensus 593 L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 672 (821)
+++++|.+ ..++... +. +++|+.+.+..+- ..--...+..+++|+.+.+..
T Consensus 185 l~l~~n~l-~~I~~~a---------------------F~-~~~L~~l~lp~~l---~~I~~~aF~~~~~L~~l~l~~--- 235 (401)
T 4fdw_A 185 ADLSKTKI-TKLPAST---------------------FV-YAGIEEVLLPVTL---KEIGSQAFLKTSQLKTIEIPE--- 235 (401)
T ss_dssp EECTTSCC-SEECTTT---------------------TT-TCCCSEEECCTTC---CEECTTTTTTCTTCCCEECCT---
T ss_pred eecCCCcc-eEechhh---------------------Ee-ecccCEEEeCCch---heehhhHhhCCCCCCEEecCC---
Confidence 77766655 2233221 22 3455555554321 000123677889999999863
Q ss_pred CCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCC----CeeeecCCCCcccceeeeccCC
Q 045113 673 MPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSG----RKLTCGSDGFPRLKVLHLKSML 748 (821)
Q Consensus 673 ~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~ 748 (821)
+++.+.-..+.. .+|+.+.|.++ +.......+.+|++|+.+.+.++.... ......+.++++|+.+.|.+
T Consensus 236 --~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 236 --NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp --TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--
T ss_pred --CccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--
Confidence 566665555666 78999999544 444456678899999999998765431 12233467789999999985
Q ss_pred Cccceee-ccccccccceeEEeecCCCCCCc-cccCCCCCCCEEEEeCCc
Q 045113 749 WLEEWTM-GTGAMPKLECLIINPCAYLKKMP-EQLWCIKSLNNFNCWWPQ 796 (821)
Q Consensus 749 ~l~~~~~-~~~~l~~L~~L~i~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 796 (821)
.+..+.. .+..|++|+.|.|..+ ++.++ ..+.++ +|+.|.+.+..
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 4776654 4677899999999653 66664 467888 99999998753
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=7.8e-09 Score=110.70 Aligned_cols=221 Identities=10% Similarity=0.028 Sum_probs=122.8
Q ss_pred CCCceEEEeecCCCC-------ccc---------hhhhHHhhcc--------CCceeEEEeCCCCCCcccc-cccCCCCc
Q 045113 489 YPHLHSLLYFTSESD-------HLD---------HIDWQKICEM--------YKLLRVLDLGSLVLNQYPS-EIENLSLL 543 (821)
Q Consensus 489 ~~~LrsL~l~~~~~~-------~~~---------~~~~~~~~~~--------~~~Lr~L~L~~~~l~~lp~-~i~~l~~L 543 (821)
+++|++|.+.++... ... ..++..+|.. |++|+.|+|.+ .++.+++ .|..|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 566777777665543 000 1244567777 88888888888 7776664 57788888
Q ss_pred eEEeecCCCCccccHHHHhccccceEEecCCcc----cccc-hhhhccCccCc--------------------------e
Q 045113 544 RYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSY----IDHT-ADEFWKMKKLR--------------------------H 592 (821)
Q Consensus 544 r~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~----l~~l-p~~i~~l~~L~--------------------------~ 592 (821)
+.|+++.+.+..++......+.++..+.+.... ...+ +..+.++..|+ .
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 888888888776665544466677777665521 1111 11122222232 2
Q ss_pred eecCCcccCCCCCCCcCCCCCcceeccccC--CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcC-EEEeec
Q 045113 593 LNFGSITLPAHPGNYCGSLENLNFISALYP--CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLE-SLKLAN 669 (821)
Q Consensus 593 L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~-~L~l~~ 669 (821)
+.+.++............+++|+.+++..+ ...+..++.+|++|+.|.+..+- ..--...|..+++|+ .+.+..
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni---~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL---KTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC---CEECTTTTTTCTTCCEEEEECT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc---ceehHHHhhCChhccEEEEEcc
Confidence 211111000000000012566777776663 34444447777777777776541 111123456667777 777752
Q ss_pred CCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEE
Q 045113 670 ESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLK 718 (821)
Q Consensus 670 ~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 718 (821)
+++.+.-..+..|++|+.|+++++.+.......+.++++|+.+.
T Consensus 284 -----~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 284 -----SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -----TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -----cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 45555555566677777777766666554555666666666654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=3.1e-09 Score=102.28 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=83.6
Q ss_pred eEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccccHHHHhccccceEEe
Q 045113 493 HSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLD 571 (821)
Q Consensus 493 rsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~ 571 (821)
+++.+.++.... ++..+ .+.|++|+|++|.++.+ |..++++++|++|+|++|.+..+|..+..++++|++|+
T Consensus 15 ~~l~~~~n~l~~----iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLAS----VPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSS----CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCCc----cCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 456666655442 22222 27899999999999977 56789999999999999999999987533899999999
Q ss_pred cCCcccccchhh-hccCccCceeecCCcccC
Q 045113 572 MPFSYIDHTADE-FWKMKKLRHLNFGSITLP 601 (821)
Q Consensus 572 L~~~~l~~lp~~-i~~l~~L~~L~L~~~~~~ 601 (821)
|++|.+..+|.. +..+++|++|++++|.+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999999875 889999999999999884
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=5.5e-09 Score=100.14 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=83.9
Q ss_pred ceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCcc-cccccCCCCceEEeecCCCCccccHHHHhccccceEE
Q 045113 492 LHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQY-PSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTL 570 (821)
Q Consensus 492 LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L 570 (821)
.+++.+.++.... ++..+ .+.|++|+|++|.++.+ |..+..+++|++|+|++|.+..+|......+++|++|
T Consensus 11 ~~~l~~s~n~l~~----ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLAS----VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSS----CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCc----cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3456666655442 22222 37899999999999977 5678999999999999999999988753389999999
Q ss_pred ecCCcccccchh-hhccCccCceeecCCcccCC
Q 045113 571 DMPFSYIDHTAD-EFWKMKKLRHLNFGSITLPA 602 (821)
Q Consensus 571 ~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~ 602 (821)
+|++|.+..+|. .+.++++|++|++++|.+..
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999999999976 48899999999999998854
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.80 E-value=3.4e-08 Score=108.03 Aligned_cols=256 Identities=14% Similarity=0.099 Sum_probs=145.5
Q ss_pred CCCeeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccccc---ceeEEEEcCCCCCHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF---DCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~ 240 (821)
...++||+.+++.+.+++... ......+.|+|++|+||||||+.+++ .....+ ...+|+.+....+...+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 367999999999999998752 33467899999999999999999998 444332 24677777666677788888
Q ss_pred HHHHhCCch--------h-HHHHHHHhC--CCcEEEEEecCCCH------HHHHHHHHhCCC-CCCCcEEEEEecchhhh
Q 045113 241 IIKFLMPSS--------R-LIILHEYLM--TKRYLIVIDDVWSI------EVWDIIREILPD-NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 241 i~~~l~~~~--------~-~~~l~~~l~--~kr~LlVlDdv~~~------~~~~~l~~~l~~-~~~gs~iiiTtr~~~v~ 302 (821)
++..++... + ...+.+.+. +++.+||+|+++.. ..+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 877765421 1 344555553 45899999999642 233444333311 23356678888766432
Q ss_pred -----cc---c-----ccccCCc----------------CCCCccchHHHHHHHcC---CchHHHHHhhccc--------
Q 045113 303 -----TL---F-----QFENGQN----------------IRLDLVPTGGPLRVTYQ---GWPFHILYHGSIS-------- 342 (821)
Q Consensus 303 -----~l---f-----~~~~~~~----------------~~~~~~~~~~~i~~~c~---glPLai~~~g~~~-------- 342 (821)
.+ | .|..-.. ...--.+..+.+++.++ |.|..+..+....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 00 0 0110000 01111234556666676 8886433332110
Q ss_pred -ccccchhccccc-----hhHHHHhhhcCChhhHHHHhhcccCCC-C-ceechhhHHHHH----HHcCCCCCChHHHHHH
Q 045113 343 -LEENKREAIAKP-----IFLQSVAYCMLPFPLKLCCLYLPVFPA-H-LEISTRQLYQLW----IAEGFIPDNSEATAEK 410 (821)
Q Consensus 343 -~~~~~~~~i~~~-----~~~l~~sy~~L~~~~k~cfl~~s~Fp~-~-~~i~~~~Li~~W----~aeg~i~~~~~~~~~~ 410 (821)
..+. .+.+... ...+.-++..||.+.+..+..++...+ + ..+...++.+.+ -..| +.+........
T Consensus 257 ~~~i~-~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~ 334 (386)
T 2qby_A 257 DTKVK-EEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAVTQRRVSD 334 (386)
T ss_dssp CSSCC-HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCCCHHHHHH
T ss_pred CCccC-HHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCCCHHHHHH
Confidence 0111 1111100 034555677888887766665553211 2 224454443322 1223 22223345678
Q ss_pred HHHHHHhCCceeeee
Q 045113 411 YLEQLINRGFVEVKK 425 (821)
Q Consensus 411 ~~~~L~~r~ll~~~~ 425 (821)
+++.|...+++....
T Consensus 335 ~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 335 IINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHTSEEEEE
T ss_pred HHHHHHhCCCEEEEe
Confidence 899999999998754
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.72 E-value=1.1e-07 Score=104.59 Aligned_cols=280 Identities=13% Similarity=0.041 Sum_probs=139.6
Q ss_pred CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccH--------
Q 045113 488 YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPL-------- 558 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-------- 558 (821)
.|.+|+++.+...-. .+...+|.+|++|+.++|..+ ++.++ ..+..+..|+.+.+..+ +..+..
T Consensus 69 ~c~~L~~i~lp~~i~-----~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 69 GCRKVTEIKIPSTVR-----EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TCTTEEEEECCTTCC-----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred CCCCceEEEeCCCcc-----CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 677888887753321 244567888888888888654 44443 34555666665554332 111111
Q ss_pred ---------------HHHhccccceEEecCCcccccch-hhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC
Q 045113 559 ---------------SFFNYLLNLYTLDMPFSYIDHTA-DEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 559 ---------------~i~~~L~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~ 622 (821)
.+. ++.+|+.+.+..+ +..++ ..+.++.+|+.+++..+ +...-...+.++..|+.+.+..+
T Consensus 142 ~~~~~~~~~~~i~~~aF~-~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFA-TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp SEEECCTTCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccCccccccchhhhc-ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 122 4455555555433 22222 23444555555554433 11111122444444544443332
Q ss_pred CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCC
Q 045113 623 CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMD 702 (821)
Q Consensus 623 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~ 702 (821)
............+|+.+.+...... . -...+..+..|+.+.+.. ++..+.-..+..+.+++.+.+....+.
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~~~-i--~~~~f~~~~~l~~~~~~~-----~~~~i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSFTE-L--GKSVFYGCTDLESISIQN-----NKLRIGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTCCE-E--CSSTTTTCSSCCEEEECC-----TTCEECSCTTTTCTTCCEEEECSSEEC-
T ss_pred ceEeehhhcccCCCceEEECCCcee-c--ccccccccccceeEEcCC-----CcceeeccccccccccceeccCceeec-
Confidence 1111111223345555544332100 0 011334455555555542 233333233556666666666544321
Q ss_pred CCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceee-ccccccccceeEEeecCCCCCCcc-c
Q 045113 703 DPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM-GTGAMPKLECLIINPCAYLKKMPE-Q 780 (821)
Q Consensus 703 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~i~~c~~l~~lp~-~ 780 (821)
-..+..+.+|+.+.+..+ +.. .....+.++.+|+.+.|.+ .++.+.. .+..|++|+.+.+..+ ++.++. .
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~a 361 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANA 361 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTT
T ss_pred --cccccccccccccccccc-cce-echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHH
Confidence 234566778888877632 211 1122355667788887754 3555532 4566778888877543 555543 5
Q ss_pred cCCCCCCCEEEEeC
Q 045113 781 LWCIKSLNNFNCWW 794 (821)
Q Consensus 781 l~~l~~L~~L~l~~ 794 (821)
+.+|++|+.+.+..
T Consensus 362 F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 362 FQGCINLKKVELPK 375 (394)
T ss_dssp BTTCTTCCEEEEEG
T ss_pred hhCCCCCCEEEECC
Confidence 77788888888754
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.63 E-value=1.5e-07 Score=95.57 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=76.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc-------------------cceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY-------------------FDCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 227 (821)
.+++||+..++.+..++..+. ....+.|+|.+|+||||||+.+++....... +...+.+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 469999999999999997653 2358899999999999999999873211111 01112222
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
....... .....++..+... ...+++.+||+||++. ...++.+...+.....+..+|+||+...
T Consensus 102 ~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 102 AASRTKV-EDTRDLLDNVQYA--------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp TTCGGGH-HHHHHHHHSCCCS--------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CcccccH-HHHHHHHHHhhhc--------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 2211111 1112222221110 0235789999999964 5667777776665566788999987654
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.1e-08 Score=111.27 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=24.4
Q ss_pred cCCCCCCCeEEEeccccc--chhHHHHHccCCCCcCEEEeecC
Q 045113 630 LGRLPNLRNLRIQGDLSY--NQSLLSKSLCRLSCLESLKLANE 670 (821)
Q Consensus 630 l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~~~~L~~L~l~~~ 670 (821)
+..+++|+.|++++|.-. ....++..+...++|++|+|++|
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 555667777777776411 12245555556677777777754
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=1.1e-08 Score=111.20 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=110.0
Q ss_pred CCceeEEEeCCCCCCc-----cccccc-CCCCceEEeecCCCCcc-ccHHHHhccccceEEecCCcccccch-----hhh
Q 045113 517 YKLLRVLDLGSLVLNQ-----YPSEIE-NLSLLRYLKLNIPSLKS-LPLSFFNYLLNLYTLDMPFSYIDHTA-----DEF 584 (821)
Q Consensus 517 ~~~Lr~L~L~~~~l~~-----lp~~i~-~l~~Lr~L~L~~~~i~~-lp~~i~~~L~~L~~L~L~~~~l~~lp-----~~i 584 (821)
++.|+.|+|++|.++. +...+. +..+|++|+|++|.+.. -...+...+.+|+.|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5678899999998872 233333 23689999999998862 22334336778899999999775442 222
Q ss_pred -ccCccCceeecCCcccCCCCCCCcCCCCCcceeccccCCcchhhhcCCCCCCCeEEEeccccc--chhHHHHHccCCCC
Q 045113 585 -WKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYPCCCTKDLLGRLPNLRNLRIQGDLSY--NQSLLSKSLCRLSC 661 (821)
Q Consensus 585 -~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~~~~ 661 (821)
...++|++|+|++|.+...-.. ..... +..+++|+.|++++|.-. ....++..+...++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~-----------------~l~~~-L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA-----------------VLMEG-LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH-----------------HHHHH-HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred HhcCCccceeeCCCCCCChHHHH-----------------HHHHH-HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 2467788888888876321100 01112 566778888888887411 22355677788889
Q ss_pred cCEEEeecCCCCCCCCeeEec----ccCCCCCcceEEEecccCCCCCcccccC
Q 045113 662 LESLKLANESKMPRLSKIILA----EYVFPHSLTHLSFSNTDLMDDPMPALEK 710 (821)
Q Consensus 662 L~~L~l~~~~~~~~L~~l~l~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 710 (821)
|+.|+|++| .+...... .+..+++|+.|+|++|.+++.....+..
T Consensus 213 L~~L~Ls~N----~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 213 LQELNVAYN----GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CCEEECCSS----CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred cCeEECCCC----CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 999999865 34322111 1345688999999999886554444443
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.1e-07 Score=102.39 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=44.1
Q ss_pred hccCCceeEEEeCC-CCCCccc-ccccCCCCceEEeecCCCCccccHH-HHhccccceEEecCCcccccchhhhccCccC
Q 045113 514 CEMYKLLRVLDLGS-LVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLS-FFNYLLNLYTLDMPFSYIDHTADEFWKMKKL 590 (821)
Q Consensus 514 ~~~~~~Lr~L~L~~-~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L 590 (821)
+..+++|+.|+|++ |.++.+| ..|+.|++|++|+|++|.+..+|+. +. +|++|+.|+|++|.+..+|..+.....|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCCCCccceeCHHHcccCCc
Confidence 45555555555553 5555444 3455555555555555555544432 33 5555555555555555554433332235
Q ss_pred ceeecCCccc
Q 045113 591 RHLNFGSITL 600 (821)
Q Consensus 591 ~~L~L~~~~~ 600 (821)
+.|+|.+|.+
T Consensus 106 ~~l~l~~N~~ 115 (347)
T 2ifg_A 106 QELVLSGNPL 115 (347)
T ss_dssp CEEECCSSCC
T ss_pred eEEEeeCCCc
Confidence 5555555554
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=9.7e-07 Score=96.87 Aligned_cols=263 Identities=12% Similarity=0.061 Sum_probs=154.3
Q ss_pred hhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcccccc-------
Q 045113 509 DWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHT------- 580 (821)
Q Consensus 509 ~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l------- 580 (821)
+-..+|..|.+|+.+.|.. .++.++ ..+.+|.+|+.+++..+ +..++......+.+|+.+.+..+ +..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3457899999999999975 477665 46889999999999764 66666554447788887766543 1111
Q ss_pred ----------------hhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEec
Q 045113 581 ----------------ADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQG 643 (821)
Q Consensus 581 ----------------p~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~ 643 (821)
...+.++++|+.+.+..+.. ..-...+..+.+|+.+.+..+ ......++.++..|+.+.+..
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence 11234455555555543221 111122444555555544332 112222244455555444333
Q ss_pred ccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccc
Q 045113 644 DLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNS 723 (821)
Q Consensus 644 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 723 (821)
.... +.........|+.+.+.. .+..+.-..+..+.+|+.+.+..+.. ......+..++.|+.+.+....
T Consensus 218 ~~~~----i~~~~~~~~~l~~i~ip~-----~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 218 SLYY----LGDFALSKTGVKNIIIPD-----SFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCE----ECTTTTTTCCCCEEEECT-----TCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE
T ss_pred CceE----eehhhcccCCCceEEECC-----CceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee
Confidence 2100 001112234555555432 33333333367788899888876642 2334566788888888776332
Q ss_pred cCCCeeeecCCCCcccceeeeccCCCccceee-ccccccccceeEEeecCCCCCCcc-ccCCCCCCCEEEEe
Q 045113 724 YSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM-GTGAMPKLECLIINPCAYLKKMPE-QLWCIKSLNNFNCW 793 (821)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~i~~c~~l~~lp~-~l~~l~~L~~L~l~ 793 (821)
+. ...+..+.+|+.+.+.+ .+..+.. .+..+++|+.+.|.+ .++.++. .+.+|.+|+.+.+.
T Consensus 288 i~----~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 288 VP----EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp EC----TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred ec----ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 22 22356788999999975 4666643 467789999999863 3566643 67889999999874
No 161
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.46 E-value=7.5e-07 Score=88.90 Aligned_cols=123 Identities=13% Similarity=0.113 Sum_probs=80.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-ccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH-YFD-CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.+++|++..++.+.+++.... ...+.|+|.+|+||||+|+.+++ +... .+. ..+.+..+...+...+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHH
Confidence 468999999999999998764 33489999999999999999987 3322 222 34445555555544433322211
Q ss_pred hCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 245 LMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 245 l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
.... ..-..++.+||+||++.. ..++.+...+.....+.++|+||+...
T Consensus 93 ~~~~-------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 93 ARTA-------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HTSC-------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred hccc-------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1100 011357899999999753 455566555554456788999987654
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=2.5e-07 Score=99.67 Aligned_cols=98 Identities=19% Similarity=0.091 Sum_probs=77.6
Q ss_pred EEEeCCC-CCCcccccccCCCCceEEeecC-CCCccccH-HHHhccccceEEecCCcccccchh-hhccCccCceeecCC
Q 045113 522 VLDLGSL-VLNQYPSEIENLSLLRYLKLNI-PSLKSLPL-SFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGS 597 (821)
Q Consensus 522 ~L~L~~~-~l~~lp~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~ 597 (821)
.++++++ .++.+|. +..+++|++|+|++ |.+..+|. .+. .|++|+.|+|++|.+..+|+ .|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4588887 7888888 88899999999986 88888774 466 89999999999998888854 678899999999999
Q ss_pred cccCCCCCCCcCCCCCcceeccccC
Q 045113 598 ITLPAHPGNYCGSLENLNFISALYP 622 (821)
Q Consensus 598 ~~~~~~~p~~i~~l~~L~~L~~~~~ 622 (821)
|.+....+..+..+. |+.|++..|
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CccceeCHHHcccCC-ceEEEeeCC
Confidence 988543334444454 888888774
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=9.2e-08 Score=103.02 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=90.4
Q ss_pred HHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCccccc--CCCCCCEEEEec--cccCCC
Q 045113 652 LSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALE--KLPLLQVLKLKQ--NSYSGR 727 (821)
Q Consensus 652 l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~--~~~~~~ 727 (821)
+...+..+++|+.|+|+++. .+ .+..+ .+++|++|+|..|.+.......+. .+|+|+.|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~---~l---~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTN---NL---SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCB---TC---BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCC---Cc---eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 44555667788888887421 11 11222 267899999988887655555554 789999999863 222221
Q ss_pred e-e-----eecCCCCcccceeeeccCCCcccee---eccccccccceeEEeecCCCCC-----CccccCCCCCCCEEEEe
Q 045113 728 K-L-----TCGSDGFPRLKVLHLKSMLWLEEWT---MGTGAMPKLECLIINPCAYLKK-----MPEQLWCIKSLNNFNCW 793 (821)
Q Consensus 728 ~-~-----~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~l~~L~~L~i~~c~~l~~-----lp~~l~~l~~L~~L~l~ 793 (821)
. . ......||+|++|.|.+|....... .....+|+|++|+++.|. +.. ++.++.++++|+.|+++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECC
Confidence 1 1 1222468999999998875433221 122468999999998765 432 45556678899999998
Q ss_pred CCc--HHHHHHHh
Q 045113 794 WPQ--PELRQKLR 804 (821)
Q Consensus 794 ~c~--~~~~~~~~ 804 (821)
+|. .+..+.+.
T Consensus 316 ~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 316 YNYLSDEMKKELQ 328 (362)
T ss_dssp SBBCCHHHHHHHH
T ss_pred CCcCCHHHHHHHH
Confidence 886 34444443
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.31 E-value=1.5e-07 Score=101.29 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=54.1
Q ss_pred CCCCceEEEeecCCCC-ccc---hhhhHHhhccCCceeEEEeCCCCCC----------cccccccCCCCceEEeecCCCC
Q 045113 488 YYPHLHSLLYFTSESD-HLD---HIDWQKICEMYKLLRVLDLGSLVLN----------QYPSEIENLSLLRYLKLNIPSL 553 (821)
Q Consensus 488 ~~~~LrsL~l~~~~~~-~~~---~~~~~~~~~~~~~Lr~L~L~~~~l~----------~lp~~i~~l~~Lr~L~L~~~~i 553 (821)
....++.|.+-..... ... ...+.....++++|+.|.+...... .++..+..+++|+.|+|+++.-
T Consensus 105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 4456677766533221 000 0112233456778888887654321 2334445566777777766532
Q ss_pred ccccHHHHhccccceEEecCCcccccc-hhhhc--cCccCceeecC
Q 045113 554 KSLPLSFFNYLLNLYTLDMPFSYIDHT-ADEFW--KMKKLRHLNFG 596 (821)
Q Consensus 554 ~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~--~l~~L~~L~L~ 596 (821)
..++. + .+++|++|+|..|.+..- ...+. .+|+|++|+|+
T Consensus 185 l~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 185 LSIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CBCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred ceecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 23443 2 466677777766644321 12222 56677777664
No 165
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.30 E-value=5.7e-07 Score=95.83 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=57.1
Q ss_pred CCCeeechhhHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIII 242 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 242 (821)
-..++|++..++.+..++... ......+.|+|.+|+||||+|+.+++ ..... .+++..+......++...
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~---~~~~~~~~~~~~~~l~~~-- 83 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVN---LRVTSGPAIEKPGDLAAI-- 83 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCC---EEEECTTTCCSHHHHHHH--
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEeccccCChHHHHHH--
Confidence 356999999999988888631 22346788999999999999999987 33322 234444433333222211
Q ss_pred HHhCCchhHHHHHHHhCCCcEEEEEecCCCH
Q 045113 243 KFLMPSSRLIILHEYLMTKRYLIVIDDVWSI 273 (821)
Q Consensus 243 ~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 273 (821)
+. .. ..+..+|++|++...
T Consensus 84 --l~---------~~-~~~~~~l~lDEi~~l 102 (324)
T 1hqc_A 84 --LA---------NS-LEEGDILFIDEIHRL 102 (324)
T ss_dssp --HT---------TT-CCTTCEEEETTTTSC
T ss_pred --HH---------Hh-ccCCCEEEEECCccc
Confidence 11 00 135679999999753
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=1.4e-06 Score=92.57 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=78.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-ccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH-YFD-CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.+++|++..++.+..++..+. ...+.++|.+|+||||+|+.+++ .... .+. ..+++..+...+...+. +++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDVVR-NQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHHHH-THHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHHHH-HHHHH
Confidence 468999999999999998764 33389999999999999999987 3321 222 34555555544443332 22211
Q ss_pred hCCchhHHHHHHHh-CCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 245 LMPSSRLIILHEYL-MTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 245 l~~~~~~~~l~~~l-~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
+... ...+ .+++.++|+||++. ...++.+...+.....++++|+||+...
T Consensus 96 ~~~~------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 96 FAQK------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HHHB------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred HHhc------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 1000 0012 35689999999975 3455555555544455788888887643
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.6e-06 Score=83.99 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=53.3
Q ss_pred HHhhccCCceeEEEeCCC-CCC-----cccccccCCCCceEEeecCCCCc-----cccHHHHhccccceEEecCCccccc
Q 045113 511 QKICEMYKLLRVLDLGSL-VLN-----QYPSEIENLSLLRYLKLNIPSLK-----SLPLSFFNYLLNLYTLDMPFSYIDH 579 (821)
Q Consensus 511 ~~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~ 579 (821)
..++...+.|+.|+|++| .+. .+...+...++|++|+|++|.+. .+...+. ..++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCH
Confidence 344555555555555555 443 23344444555555555555554 1333333 44555555555554432
Q ss_pred -----chhhhccCccCceeec--CCcccCCC----CCCCcCCCCCcceecccc
Q 045113 580 -----TADEFWKMKKLRHLNF--GSITLPAH----PGNYCGSLENLNFISALY 621 (821)
Q Consensus 580 -----lp~~i~~l~~L~~L~L--~~~~~~~~----~p~~i~~l~~L~~L~~~~ 621 (821)
+...+...+.|++|+| ++|.+... +...+...++|++|++..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 3344445555555555 44554321 222233445555555544
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=6.1e-05 Score=82.37 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=169.7
Q ss_pred CCC-CceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCC---CCccc-ccccCCCCceEEeecCCCCccccHHHHh
Q 045113 488 YYP-HLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLV---LNQYP-SEIENLSLLRYLKLNIPSLKSLPLSFFN 562 (821)
Q Consensus 488 ~~~-~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~---l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 562 (821)
.+. .|+++.+...-. .+-..+|.+|.+|+.+.+..+. ++.++ ..+..+..|+.+.+..+ +..++.....
T Consensus 61 ~~~~~L~sI~iP~svt-----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 61 NYKYVLTSVQIPDTVT-----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TCCSCCCEEEECTTCC-----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred CCCCcCEEEEECCCee-----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 453 588888864422 2456788999999999987653 55554 45677888887777653 5555544433
Q ss_pred ccccceEEecCCcccccc-hhhhccCccCceeecCCcccCCCCCCCcCCCCCcceeccccC-CcchhhhcCCCCCCCeEE
Q 045113 563 YLLNLYTLDMPFSYIDHT-ADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALYP-CCCTKDLLGRLPNLRNLR 640 (821)
Q Consensus 563 ~L~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~ 640 (821)
.+.+|+.+.+..+ +..+ ...+..+.+|+.+.+..+- ..+....-...+|+.+.+..+ ...-..++..+.+|....
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV--TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccce-eeeecccceeccccccccccccee--eEeccccccccceeEEEECCcccccccchhhhccccceec
Confidence 7888999888654 3334 3356778888888776542 222222112345666655442 222222266677777665
Q ss_pred EecccccchhHHH-----------HHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCccccc
Q 045113 641 IQGDLSYNQSLLS-----------KSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALE 709 (821)
Q Consensus 641 l~~~~~~~~~~l~-----------~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 709 (821)
............. ........+..+.+ +..++.+.-..+..+.+|+.+.+.... .......+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----p~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~ 285 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-----PNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFM 285 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-----CTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEc-----CCcceEcccceeeecccccEEeccccc-ceecCcccc
Confidence 5433100000000 00001112222222 123333333337778888888886553 223344567
Q ss_pred CCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceee-ccccccccceeEEeecCCCCCCcc-ccCCCCCC
Q 045113 710 KLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM-GTGAMPKLECLIINPCAYLKKMPE-QLWCIKSL 787 (821)
Q Consensus 710 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~i~~c~~l~~lp~-~l~~l~~L 787 (821)
++++|+.+.+. +.+.. .....+.++.+|+.+.|.. .++.+.. .+..|.+|+.+.|.. .++.++. .+.+|++|
T Consensus 286 ~c~~L~~i~l~-~~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITE-LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TCTTCCEEECC-TTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred cccccccccCC-Ccccc-cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence 88899999886 33221 2223456778899999875 3666643 467789999999864 3566654 68899999
Q ss_pred CEEEEeCCcH
Q 045113 788 NNFNCWWPQP 797 (821)
Q Consensus 788 ~~L~l~~c~~ 797 (821)
+.+.+.+...
T Consensus 360 ~~i~~~~~~~ 369 (394)
T 4gt6_A 360 NNIEYSGSRS 369 (394)
T ss_dssp CEEEESSCHH
T ss_pred CEEEECCcee
Confidence 9999988763
No 169
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.3e-06 Score=82.67 Aligned_cols=87 Identities=11% Similarity=0.089 Sum_probs=43.7
Q ss_pred CcceEEEecccCCCCCcccccCCCCCCEEEEeccc-cCCCeeeecCC---CCcccceeeeccCCCccce-eecccccccc
Q 045113 689 SLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNS-YSGRKLTCGSD---GFPRLKVLHLKSMLWLEEW-TMGTGAMPKL 763 (821)
Q Consensus 689 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~---~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L 763 (821)
+|+.|++++|.+++..+..+.++++|+.|+|++|. +++..+..... ..++|++|+|++|+.++.- ...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666677766665555566666666666666554 22222111111 1234555555555544421 1123345555
Q ss_pred ceeEEeecCCCC
Q 045113 764 ECLIINPCAYLK 775 (821)
Q Consensus 764 ~~L~i~~c~~l~ 775 (821)
++|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 555555555544
No 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.06 E-value=2.2e-06 Score=83.08 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=77.5
Q ss_pred CCCCceEEEeecC-CCCccchhhhHHhhccCCceeEEEeCCCCCC-----cccccccCCCCceEEeecCCCCcc-----c
Q 045113 488 YYPHLHSLLYFTS-ESDHLDHIDWQKICEMYKLLRVLDLGSLVLN-----QYPSEIENLSLLRYLKLNIPSLKS-----L 556 (821)
Q Consensus 488 ~~~~LrsL~l~~~-~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----l 556 (821)
..+.|++|.+.++ .........+...+...+.|++|+|++|.+. .+...+...+.|++|+|++|.|.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5778888888877 5543222344556677788888888888876 244556666778888888888763 4
Q ss_pred cHHHHhccccceEEec--CCccccc-----chhhhccCccCceeecCCccc
Q 045113 557 PLSFFNYLLNLYTLDM--PFSYIDH-----TADEFWKMKKLRHLNFGSITL 600 (821)
Q Consensus 557 p~~i~~~L~~L~~L~L--~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~ 600 (821)
...+. ..++|++|+| ++|.+.. +...+...+.|++|++++|.+
T Consensus 114 ~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 55555 6677888888 6676543 445566677888888888766
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=8.8e-06 Score=78.86 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=38.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||++.++++.+.+.... ...+.|+|.+|+||||+|+.+.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 468999999999999997754 55678999999999999999987
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=9.2e-06 Score=86.38 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=76.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc-ccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH-YFD-CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.+++|++..++.+..++..+. ...+.++|.+|+||||+|+.+++ .+.. .+. ..+.+..+...+...+...+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGINVIREKV--- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHHTTHHHH---
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchHHHHHHH---
Confidence 469999999999999998764 44589999999999999999997 3321 111 23344443321111111111
Q ss_pred hCCchhHHHHHHH--h-CCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 245 LMPSSRLIILHEY--L-MTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 245 l~~~~~~~~l~~~--l-~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
...... + .+++.++|+||++. ...++.+...+.....+.++|+||....
T Consensus 98 -------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 98 -------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp -------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred -------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 011111 1 25788999999975 3556666666555556788998887654
No 173
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.6e-05 Score=83.16 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=74.1
Q ss_pred eeechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhcCccccc------ccceeEEEEcCCCCCHHHHHHH
Q 045113 169 TVGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH------YFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 169 ~vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
+.|||+++++|...|... .+....+-|+|.+|+|||++|+.|.+...-.. .| ..+.|......+...+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 789999999999888763 34577889999999999999999998321111 12 3566776777788899999
Q ss_pred HHHHhCCchh--------HHHHHHHh---CCCcEEEEEecCCC
Q 045113 241 IIKFLMPSSR--------LIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 241 i~~~l~~~~~--------~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
|++++.+..- ...+.+.+ .+++++++||+++.
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 9999965421 33333333 35789999999975
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.95 E-value=6.3e-05 Score=82.26 Aligned_cols=304 Identities=11% Similarity=0.068 Sum_probs=173.4
Q ss_pred ceeEEEEEcCCCcccccC--CCCCceEEEeecCCCCccchhhhHHhhccCCceeEEEeCCCCCCccc-ccccCCCCceEE
Q 045113 470 VKRFFALEQQSDFAYLDD--YYPHLHSLLYFTSESDHLDHIDWQKICEMYKLLRVLDLGSLVLNQYP-SEIENLSLLRYL 546 (821)
Q Consensus 470 ~~r~lsl~~~~~~~~~~~--~~~~LrsL~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L 546 (821)
.+..+.+...-....... .|.+|+++.+..+.... -..+-..+|..|..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 65 ~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSC-VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCC-CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCe-eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 366677765432222222 89999999987653221 02244577899999988777654 44454 456788999999
Q ss_pred eecCCCCccccHHHHhccccceEEecCCcccccchhhhccCccCceeecCCcccCCCCCCCcCCCCCcceecccc-CCcc
Q 045113 547 KLNIPSLKSLPLSFFNYLLNLYTLDMPFSYIDHTADEFWKMKKLRHLNFGSITLPAHPGNYCGSLENLNFISALY-PCCC 625 (821)
Q Consensus 547 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~~~~-~~~~ 625 (821)
.+..+ +..++......+.+|+.+.+..+ +..+........+|+.+.+..+.. ..-...+..+.+|....... ....
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 99754 45555444438899999998765 445544333456788887754422 11223355666666554332 1000
Q ss_pred hhhh--------------cCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcc
Q 045113 626 TKDL--------------LGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVFPHSLT 691 (821)
Q Consensus 626 ~~~~--------------l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~ 691 (821)
.... ......+..+.+-.. ...--...+..+..|+.+.+.. ++..+.-..+..+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~-----~~~~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPD-----SVVSIGTGAFMNCPALQ 291 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCT-----TCCEECTTTTTTCTTCC
T ss_pred ccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEeccc-----ccceecCcccccccccc
Confidence 0000 111222333332211 0000113566778888888753 44444444477788888
Q ss_pred eEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCcccee-eccccccccceeEEee
Q 045113 692 HLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWT-MGTGAMPKLECLIINP 770 (821)
Q Consensus 692 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~i~~ 770 (821)
.+.+... +.......+.+|.+|+.+.|..+ +.. .....+.++.+|+.+.|-. .+..+. ..+..|++|+.+.+.+
T Consensus 292 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 292 DIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred cccCCCc-ccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 8888643 33334456788999999998732 221 1123466788999999864 356554 3467889999999886
Q ss_pred cCCCCCCccccCCCCCCCEEEEeC
Q 045113 771 CAYLKKMPEQLWCIKSLNNFNCWW 794 (821)
Q Consensus 771 c~~l~~lp~~l~~l~~L~~L~l~~ 794 (821)
+... ...+..+.+|+.|.+..
T Consensus 367 ~~~~---~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 367 SRSQ---WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CHHH---HHTCBCCCCC-------
T ss_pred ceee---hhhhhccCCCCEEEeCC
Confidence 5321 13456677788777643
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.85 E-value=2.3e-05 Score=72.43 Aligned_cols=111 Identities=12% Similarity=-0.004 Sum_probs=65.2
Q ss_pred CeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEcCCCCCHHHHHHHHHHHhC
Q 045113 168 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-KHYFDCHAWVQEPYTCYADQILDIIIKFLM 246 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 246 (821)
.++|++..++++.+.+..-.....-|-|+|.+|+|||++|+.+++...- ...| + +..+...+....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~~~~--------- 68 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNAPQL--------- 68 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTSSCH---------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcchhh---------
Confidence 5789999999999988653222345779999999999999999974211 2223 2 544433221000
Q ss_pred CchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCCCCCCCcEEEEEecc
Q 045113 247 PSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILPDNQNGSRVLITLAK 298 (821)
Q Consensus 247 ~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiiTtr~ 298 (821)
...+.. ...-.|++|++... .....+...+.......+||.||..
T Consensus 69 ----~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 69 ----NDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----HHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----hcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011111 12347899999743 3444555444433445678777764
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=1.2e-05 Score=76.14 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=65.5
Q ss_pred CCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccceee-cccc----ccccceeEEeecCCCCCC-ccccCCCC
Q 045113 712 PLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEWTM-GTGA----MPKLECLIINPCAYLKKM-PEQLWCIK 785 (821)
Q Consensus 712 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~----l~~L~~L~i~~c~~l~~l-p~~l~~l~ 785 (821)
..|+.|++++|.++...+.. ..++++|++|+|++|..++.... .+.. +++|+.|+|++|+.++.- -..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 47999999998877665543 46899999999999998875422 2223 468999999999987741 12456799
Q ss_pred CCCEEEEeCCc
Q 045113 786 SLNNFNCWWPQ 796 (821)
Q Consensus 786 ~L~~L~l~~c~ 796 (821)
+|++|++++||
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999998
No 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=5.7e-06 Score=84.41 Aligned_cols=64 Identities=25% Similarity=0.156 Sum_probs=30.1
Q ss_pred CCCCceEEeecCCCCccc---cHHHHhccccceEEecCCcccccchhhhccCc--cCceeecCCcccCCCC
Q 045113 539 NLSLLRYLKLNIPSLKSL---PLSFFNYLLNLYTLDMPFSYIDHTADEFWKMK--KLRHLNFGSITLPAHP 604 (821)
Q Consensus 539 ~l~~Lr~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~L~~~~~~~~~ 604 (821)
++++|++|+|++|.+..+ |..+. .+++|++|+|++|.+..+ ..+..+. +|+.|+|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcccc
Confidence 344555555555554432 23333 555555555555544444 1122232 5555555555554433
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.71 E-value=5e-05 Score=78.96 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=39.3
Q ss_pred CCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++|.+..+++|.+.+... -....-+.|+|.+|+||||||+.+++
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456999999999998887542 12356789999999999999999998
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.60 E-value=0.0001 Score=70.79 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=38.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|++.+++.+.+.+.... ...+.|+|.+|+||||+|+.+.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 468999999999999997743 55678999999999999999987
No 180
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.00066 Score=73.61 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=48.2
Q ss_pred cCCCCcCEEEeecCCCCCCCCeeEecccCCCCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCC
Q 045113 657 CRLSCLESLKLANESKMPRLSKIILAEYVFPHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGF 736 (821)
Q Consensus 657 ~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 736 (821)
..+..|+.+.+.. +++.+.-..+..+.+|+.+.+..+ +.......+.++++|+.+.+.++.+.. .....+.++
T Consensus 237 ~~~~~L~~i~lp~-----~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c 309 (379)
T 4h09_A 237 YGMKALDEIAIPK-----NVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFMDC 309 (379)
T ss_dssp TTCSSCCEEEECT-----TCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTTTTC
T ss_pred cCCccceEEEcCC-----CccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccce-ehhhhhcCC
Confidence 3444455444431 233333333555566666666433 222223345566666666665333221 111224455
Q ss_pred cccceeeeccCCCccceee-ccccccccceeEEe
Q 045113 737 PRLKVLHLKSMLWLEEWTM-GTGAMPKLECLIIN 769 (821)
Q Consensus 737 ~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~i~ 769 (821)
.+|+.+.|.. .++.+.. .+..|++|+.+.|.
T Consensus 310 ~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 310 VKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 6666666643 2444432 34455566665553
No 181
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=5.3e-05 Score=77.25 Aligned_cols=82 Identities=22% Similarity=0.092 Sum_probs=65.2
Q ss_pred HHhhccCCceeEEEeCCCCCCcc---cccccCCCCceEEeecCCCCccccHHHHhccc--cceEEecCCccccc-ch---
Q 045113 511 QKICEMYKLLRVLDLGSLVLNQY---PSEIENLSLLRYLKLNIPSLKSLPLSFFNYLL--NLYTLDMPFSYIDH-TA--- 581 (821)
Q Consensus 511 ~~~~~~~~~Lr~L~L~~~~l~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~--~L~~L~L~~~~l~~-lp--- 581 (821)
..+...++.|+.|+|++|.++.+ |..+..+++|++|+|++|.|..+. .+. .+. +|++|+|++|.+.. +|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~-~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELD-KIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGG-GGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhh-hcccCCcceEEccCCcCccccCcch
Confidence 33447789999999999998854 466778999999999999999773 455 666 99999999997653 33
Q ss_pred ----hhhccCccCceee
Q 045113 582 ----DEFWKMKKLRHLN 594 (821)
Q Consensus 582 ----~~i~~l~~L~~L~ 594 (821)
..+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 3467899999995
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.57 E-value=0.00025 Score=76.76 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=73.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccc-------------------ceeEEEE
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF-------------------DCHAWVQ 227 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~wv~ 227 (821)
.+++|++..++.+...+..+. ....+.|+|.+|+||||+|+.+.+...-...+ ...+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 459999999999999997653 23578899999999999999988632111100 0122232
Q ss_pred cCCCCCHHHHHHHHHHHhCCchhHHHHHHHh-----CCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 228 EPYTCYADQILDIIIKFLMPSSRLIILHEYL-----MTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 228 ~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
.+..... ++...+.+.+ .+++.++|+||+.. ...++.+...+.....+..+|+||....
T Consensus 95 ~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 95 AASRTKV--------------EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp TTCSCCS--------------SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred ccccCCH--------------HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 2211110 0122233332 35678999999964 4556666666655555677777776543
No 183
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.57 E-value=4e-05 Score=70.64 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=34.6
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..++|++..++++.+.+..-.....-|-|+|.+|+|||++|+.+.+.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999998888652122344779999999999999999983
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.52 E-value=8.9e-05 Score=78.31 Aligned_cols=119 Identities=12% Similarity=0.113 Sum_probs=76.1
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccc-ccccc-eeEEEEcCCCCCHH---HHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYV-KHYFD-CHAWVQEPYTCYAD---QILDII 241 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~s~~~~~~---~~~~~i 241 (821)
.+++|++..++.+.+++..+. ...+-++|.+|+||||+|+.+.+ .+ ...+. ..+.+..+...... +.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTCTTTSSHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccChHHHHHHHHHH
Confidence 458999999999988887654 33489999999999999999987 32 11221 23344544332211 111111
Q ss_pred HHHhCCchhHHHHHHHh-CCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 242 IKFLMPSSRLIILHEYL-MTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 242 ~~~l~~~~~~~~l~~~l-~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
.... .+ .+++.++|+|++.. ....+.+...+.....+.++|+||....
T Consensus 93 ~~~~-----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 93 ARTA-----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp HHSC-----------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred HhcC-----------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1000 01 25688999999964 3556777777766666788888886654
No 185
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.52 E-value=4.6e-05 Score=73.26 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=60.5
Q ss_pred chhhHHHHHHHHhcCC-CCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh
Q 045113 172 LDDRMEELLDLLIEGP-PQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR 250 (821)
Q Consensus 172 r~~~~~~i~~~L~~~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 250 (821)
....++.+.+++..-. ..-..+.|+|.+|+||||||+.+++.......+ .++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 3344444444444321 235789999999999999999999832111122 23333 344444444333221111
Q ss_pred HHHHHHHhCCCcEEEEEecCCC--HHHHH--HHHHhCCC-CCCCcEEEEEec
Q 045113 251 LIILHEYLMTKRYLIVIDDVWS--IEVWD--IIREILPD-NQNGSRVLITLA 297 (821)
Q Consensus 251 ~~~l~~~l~~kr~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~iiiTtr 297 (821)
. .+.+.+. +.-+|||||++. .+.|. .+...+.. ...|..||+||.
T Consensus 92 ~-~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 92 T-KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp S-HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred H-HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1 1222222 456899999973 22332 22222221 124678898886
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.51 E-value=4e-05 Score=80.75 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=68.5
Q ss_pred CeeechhhHHHHHHHHhcC-------------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCH
Q 045113 168 DTVGLDDRMEELLDLLIEG-------------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYA 234 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~-------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 234 (821)
.++|.+..++.|.+.+... ......+-|+|.+|+|||++|+.+.+...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4889999999888776521 233567899999999999999988772111111111122332211
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHhC-CCcEEEEEecCC-----------CHHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 235 DQILDIIIKFLMPSSRLIILHEYLM-TKRYLIVIDDVW-----------SIEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 235 ~~~~~~i~~~l~~~~~~~~l~~~l~-~kr~LlVlDdv~-----------~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
+ +...+.+.. ...+...+. .+.-+|++|++. .......+...+.....+..||.||....
T Consensus 109 -~----l~~~~~g~~-~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 109 -D----LVGQYIGHT-APKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADR 180 (309)
T ss_dssp -G----TCCSSTTCH-HHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHH
T ss_pred -H----hhhhccccc-HHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHH
Confidence 0 000000000 111111111 134599999997 33445566655555555678888886543
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00022 Score=69.78 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred Ceeechh----hHHHHHHHHhcCCCC--ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHH
Q 045113 168 DTVGLDD----RMEELLDLLIEGPPQ--LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDII 241 (821)
Q Consensus 168 ~~vGr~~----~~~~i~~~L~~~~~~--~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 241 (821)
.+++.+. .++.+..++...... ...+.|+|.+|+||||||+.+++ ........++|+++ .++...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~ 97 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFREL 97 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHH
Confidence 4555443 444555555543221 27899999999999999999998 44444445666654 3444444
Q ss_pred HHHhCCchhHHHHHHHhCCCcEEEEEecCCC
Q 045113 242 IKFLMPSSRLIILHEYLMTKRYLIVIDDVWS 272 (821)
Q Consensus 242 ~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~ 272 (821)
........ ...+.+.+.+. -+|||||++.
T Consensus 98 ~~~~~~~~-~~~~~~~~~~~-~~lilDei~~ 126 (202)
T 2w58_A 98 KHSLQDQT-MNEKLDYIKKV-PVLMLDDLGA 126 (202)
T ss_dssp HHC---CC-CHHHHHHHHHS-SEEEEEEECC
T ss_pred HHHhccch-HHHHHHHhcCC-CEEEEcCCCC
Confidence 43332111 12222223222 3999999964
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.40 E-value=0.00034 Score=71.52 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=36.3
Q ss_pred CCCeeechhhHHHHHHHHh---cCC-------CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLI---EGP-------PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..++.+.+++. ... ...+.|.|+|.+|+|||++|+.+++
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4568999998888866553 211 2345688999999999999999998
No 189
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.0019 Score=69.99 Aligned_cols=134 Identities=11% Similarity=0.034 Sum_probs=84.4
Q ss_pred cCCCCCcceeccccC-CcchhhhcCCCCCCCeEEEecccccchhHHHHHccCCCCcCEEEeecCCCCCCCCeeEecccCC
Q 045113 608 CGSLENLNFISALYP-CCCTKDLLGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIILAEYVF 686 (821)
Q Consensus 608 i~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~L~~l~l~~~~~ 686 (821)
+..+.+|+.+.+..+ ......++..+.+|+.+.+...- ...+ ...+..+.+|+.+.+.. +++.+.-..+..
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v-~~I~--~~aF~~~~~l~~i~l~~-----~i~~i~~~aF~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNV-TSIG--SFLLQNCTALKTLNFYA-----KVKTVPYLLCSG 284 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTC-CEEC--TTTTTTCTTCCEEEECC-----CCSEECTTTTTT
T ss_pred cccccccceeeeccceeEEccccccCCccceEEEcCCCc-cEeC--ccccceeehhccccccc-----cceecccccccc
Confidence 334455555554432 22222336677888888775531 0111 13566778899888853 566665555788
Q ss_pred CCCcceEEEecccCCCCCcccccCCCCCCEEEEeccccCCCeeeecCCCCcccceeeeccCCCccce
Q 045113 687 PHSLTHLSFSNTDLMDDPMPALEKLPLLQVLKLKQNSYSGRKLTCGSDGFPRLKVLHLKSMLWLEEW 753 (821)
Q Consensus 687 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 753 (821)
|++|+.+.+.++.+.......+.+|.+|+.+.|.. .+.. .-...+.++.+|+.+.|.. .++.+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~-I~~~aF~~C~~L~~i~ip~--~v~~I 347 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKT-IQVYAFKNCKALSTISYPK--SITLI 347 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCE-ECTTTTTTCTTCCCCCCCT--TCCEE
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCc-cccE-EHHHHhhCCCCCCEEEECC--ccCEE
Confidence 99999999988876555566788999999999973 3221 1122356678888888754 34444
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.37 E-value=0.00062 Score=72.03 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCCCeeechhhHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++|.+..++.+.+.+.. .....+-|-++|.+|+|||+||+++.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999988831 122346789999999999999999998
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.00026 Score=76.00 Aligned_cols=132 Identities=13% Similarity=0.080 Sum_probs=73.3
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD-CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
-.+++|++..++.+..++..+. ...+.++|.+|+||||+|+.+.+.......+. ..+.+..+.......+...+...
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence 4569999999999999997764 23388999999999999999987311111121 23334444433333322211110
Q ss_pred h--CCchh-HHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 245 L--MPSSR-LIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 245 l--~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
. ..... .......-..++-+|++|++.. ....+.+...+.......++|++|...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred hhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 0 00000 0000011124567999999864 344555555544444467777777544
No 192
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=7.5e-05 Score=75.22 Aligned_cols=60 Identities=8% Similarity=0.038 Sum_probs=39.8
Q ss_pred CCeeec---hhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC
Q 045113 167 RDTVGL---DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY 230 (821)
Q Consensus 167 ~~~vGr---~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 230 (821)
.+++|. +..++.+..+...+ ....+.|+|.+|+||||||+.+.+ ........+.|+.++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHH
Confidence 456663 34455555555543 357889999999999999999987 4433334566776543
No 193
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.30 E-value=0.00067 Score=71.80 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=75.0
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHh
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFL 245 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 245 (821)
-.+++|.+..++.+.+++..+. ...++-+.|.+|+||||+|+.+.+ +.. ...+.+..+. .....+...+ ..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~-~~~~~i~~~~-~~- 95 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSD-CKIDFVRGPL-TN- 95 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTT-CCHHHHHTHH-HH-
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEcccc-cCHHHHHHHH-HH-
Confidence 3579999999999999998653 235777888899999999999987 332 2344555444 2233322211 11
Q ss_pred CCchhHHHHHHH--hCCCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 246 MPSSRLIILHEY--LMTKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 246 ~~~~~~~~l~~~--l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
.... ..+++-+|++|++... ...+.+...+.....+.++|+||....
T Consensus 96 --------~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 96 --------FASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp --------HHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred --------HHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 1111 1247889999999754 345555544443334578888887654
No 194
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.30 E-value=0.00041 Score=76.72 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=68.7
Q ss_pred Cee-echhh--HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccc--eeEEEEcCCCCCHHHHHHHHH
Q 045113 168 DTV-GLDDR--MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD--CHAWVQEPYTCYADQILDIII 242 (821)
Q Consensus 168 ~~v-Gr~~~--~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~ 242 (821)
.|+ |.... ...+......+.. ...+.|+|.+|+||||||+.+++ .....|. .+++++. ..+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHH
Confidence 455 64333 3333443333332 67899999999999999999998 4544432 2345443 23344444
Q ss_pred HHhCCchhHHHHHHHhCCCcEEEEEecCCCH----HHHHHHHHhCCC-CCCCcEEEEEecc
Q 045113 243 KFLMPSSRLIILHEYLMTKRYLIVIDDVWSI----EVWDIIREILPD-NQNGSRVLITLAK 298 (821)
Q Consensus 243 ~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~iiiTtr~ 298 (821)
..+.... ...+.+.+..+.-+|++||+... ...+.+...+.. ...|..||+||..
T Consensus 177 ~~~~~~~-~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 177 DSMKEGK-LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHTTC-HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHccc-HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4433221 33444455546779999999632 223333333221 2346788888875
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.29 E-value=0.00082 Score=69.16 Aligned_cols=46 Identities=22% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCeeechhhHHHHHHH-------HhcC-CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDL-------LIEG-PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~-------L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..+++++.. +... ......+-|+|.+|+|||++|+.+.+
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4688988887777763 3222 33467889999999999999999998
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.27 E-value=0.00053 Score=73.67 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=38.5
Q ss_pred CCCeeechhhHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..++++.+.+.. .....+.|.|+|.+|+|||+||+.+.+
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999888753 112356789999999999999999987
No 197
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.19 E-value=0.0021 Score=67.88 Aligned_cols=48 Identities=23% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCCCeeechhhHHHHHHHHhc---------C-CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIE---------G-PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~---------~-~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++|.+..++.+.+.+.. + ....+-|-++|.+|+|||+||+++++
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 345799999999998887742 1 12346789999999999999999998
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.18 E-value=0.0011 Score=69.28 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCH
Q 045113 166 NRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYA 234 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 234 (821)
-.+++|.+..++++.+.+... -...+.|.++|.+|+||||||+++.+ .....| +.+ +.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~~-----i~v----~~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISI----KG 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCEE-----EEE----CH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCCE-----EEE----Eh
Confidence 346999999999988877531 23356899999999999999999998 333222 222 22
Q ss_pred HHHHHHHHHHhCCchh-HHH-HHHHhCCCcEEEEEecCCC
Q 045113 235 DQILDIIIKFLMPSSR-LII-LHEYLMTKRYLIVIDDVWS 272 (821)
Q Consensus 235 ~~~~~~i~~~l~~~~~-~~~-l~~~l~~kr~LlVlDdv~~ 272 (821)
.++..... +.... ... +.......+.+|++|++..
T Consensus 83 ~~l~~~~~---g~~~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 83 PELLTMWF---GESEANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHHHH---TTCTTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred HHHHhhhc---CchHHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 23332221 11111 222 2223345679999999963
No 199
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.11 E-value=0.00071 Score=76.51 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCCeeechhhHHHHHHHHhcC---------------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC
Q 045113 166 NRDTVGLDDRMEELLDLLIEG---------------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY 230 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~---------------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 230 (821)
-.+++|++..++++.+++... .+..+.+-|+|.+|+||||+|+.+.+ +.. + ..+.+..+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l~--~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--ELG--Y-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HTT--C-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--HcC--C-CEEEEeCCC
Confidence 357999999999999999751 01357899999999999999999998 332 2 234455555
Q ss_pred CCCHHHHHHHHHHHhCCchhHHHHHH------HhCCCcEEEEEecCCC
Q 045113 231 TCYADQILDIIIKFLMPSSRLIILHE------YLMTKRYLIVIDDVWS 272 (821)
Q Consensus 231 ~~~~~~~~~~i~~~l~~~~~~~~l~~------~l~~kr~LlVlDdv~~ 272 (821)
......+ ...+...........+.. ....++.+|++|++..
T Consensus 113 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~ 159 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDG 159 (516)
T ss_dssp CCCHHHH-HHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGG
T ss_pred cchHHHH-HHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCc
Confidence 4443322 222222211111000000 1235788999999964
No 200
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.10 E-value=0.001 Score=70.84 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=39.5
Q ss_pred CCCeeechhhHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|++..++++..++... ......|-|+|.+|+|||++|+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 356999999999999888753 33456789999999999999999987
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.08 E-value=0.0019 Score=71.35 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=38.6
Q ss_pred CCCCeeechhhHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++|.+..++.+.+.+.. .....+-|.++|.+|+|||+||+++++
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999887732 112357889999999999999999998
No 202
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00074 Score=72.43 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=35.4
Q ss_pred CCeeechhhHHHHHHHH-hcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLL-IEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L-~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++|.+..++.+..++ ..+. ...+.|+|..|+||||+|+.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD--LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC--CCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999998888887 4433 22389999999999999998776
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.06 E-value=0.0022 Score=69.15 Aligned_cols=47 Identities=28% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCCeeechhhHHH---HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEE---LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~---i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-..++|++..++. +...+..+....+.+-|+|.+|+|||++|+.+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3579999998776 4555555543356899999999999999999998
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.03 E-value=0.0014 Score=72.41 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCeeechhhH---HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHH
Q 045113 166 NRDTVGLDDRM---EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIII 242 (821)
Q Consensus 166 ~~~~vGr~~~~---~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 242 (821)
-.+++|.+..+ ..+...+..+. ...+.++|.+|+||||+|+.+.+ .....|. -+... .....++.. ++
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~--~~~~~f~---~l~a~-~~~~~~ir~-~~ 95 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR--YANADVE---RISAV-TSGVKEIRE-AI 95 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH--HTTCEEE---EEETT-TCCHHHHHH-HH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH--HhCCCeE---EEEec-cCCHHHHHH-HH
Confidence 35689998888 67777777765 57899999999999999999998 4433331 12222 223333222 11
Q ss_pred HHhCCchhHHHHHHHhCCCcEEEEEecCCCH--HHHHHHHHhCC
Q 045113 243 KFLMPSSRLIILHEYLMTKRYLIVIDDVWSI--EVWDIIREILP 284 (821)
Q Consensus 243 ~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~l~~~l~ 284 (821)
.. +. .....+++.+|++|++... ...+.+...+.
T Consensus 96 ~~------a~--~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le 131 (447)
T 3pvs_A 96 ER------AR--QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE 131 (447)
T ss_dssp HH------HH--HHHHTTCCEEEEEETTTCC------CCHHHHH
T ss_pred HH------HH--HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh
Confidence 11 11 1112567899999999753 33444444443
No 205
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.02 E-value=0.0021 Score=68.84 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=37.5
Q ss_pred CCCeeechhhHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..++.|.+.+... ....+-|-++|.+|+|||+||+++++
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 356999999999998887421 11235588999999999999999998
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.02 E-value=0.0024 Score=66.46 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCCeeechhhHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..++.+.+.+..+ ....+.+.|+|.+|+||||+|+.+.+
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 356999999999998887431 12356889999999999999999998
No 207
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.99 E-value=0.0014 Score=69.42 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHH
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILH 255 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~ 255 (821)
...+..++..+......+.|+|.+|+||||||+.+++ .....-..+++++. .++...+...+... ....+.
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~------~~~~~~~~~~~~~~-~~~~~~ 93 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSA------DDFAQAMVEHLKKG-TINEFR 93 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEH------HHHHHHHHHHHHHT-CHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEH------HHHHHHHHHHHHcC-cHHHHH
Confidence 3444454444433456789999999999999999998 33221112344432 33333333332211 122222
Q ss_pred HHhCCCcEEEEEecCCCH----HHHHHHHHhCCC-CCCCcEEEEEecch
Q 045113 256 EYLMTKRYLIVIDDVWSI----EVWDIIREILPD-NQNGSRVLITLAKI 299 (821)
Q Consensus 256 ~~l~~kr~LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~iiiTtr~~ 299 (821)
..+. +.-+|++||+... ...+.+...+.. ...|..||+||...
T Consensus 94 ~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 94 NMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 2232 3679999999642 222333333221 12356788887643
No 208
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.93 E-value=0.0026 Score=69.14 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=38.8
Q ss_pred CCCCeeechhhHHHHHHHHhcC----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++|.+..++.+.+.+... ....+-|-|+|.+|+|||+||+.+.+
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999888421 11246889999999999999999987
No 209
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.93 E-value=0.00071 Score=69.30 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..++|.+..+.++.+.+.........|-|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999998877652222356779999999999999999973
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0019 Score=68.81 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=71.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc-cccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK-HYFD-CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
..++|.+..++.+...+..+. +.-+.++|.+|+||||+|+.+.+ .+. ..+. .+.-+..+....+..+.+.+ .
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~ir~~i-~- 98 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDVVRNQI-K- 98 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHHHHTHH-H-
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHHHHHHH-H-
Confidence 457898888888888887764 33389999999999999999987 321 1121 22333444433443332211 1
Q ss_pred hCCchhHHHHHHH---hCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 245 LMPSSRLIILHEY---LMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 245 l~~~~~~~~l~~~---l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
.+.+. +.+.+-++|+|++.. ....+.+...+.......++|++|...
T Consensus 99 --------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 99 --------DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp --------HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred --------HHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 11111 223477899999853 345555555544334466777777544
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.86 E-value=0.0006 Score=71.64 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=62.8
Q ss_pred CeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH
Q 045113 168 DTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
.++|.+..++.+...+... ......+.++|.+|+||||+|+.+.+ .....-...+.+..+...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHH
Confidence 4789999999988888653 11246899999999999999999997 332222224455544322211 1111
Q ss_pred HHHHhCCc---hhHHHHHHHhC-CCcEEEEEecCCCH--HHHHHHHHhC
Q 045113 241 IIKFLMPS---SRLIILHEYLM-TKRYLIVIDDVWSI--EVWDIIREIL 283 (821)
Q Consensus 241 i~~~l~~~---~~~~~l~~~l~-~kr~LlVlDdv~~~--~~~~~l~~~l 283 (821)
+....... .....+...+. ...-+++||++... ...+.+...+
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 11100000 00122333332 34479999999643 4445554443
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.0023 Score=65.07 Aligned_cols=47 Identities=26% Similarity=0.264 Sum_probs=35.1
Q ss_pred CCCeeechhhHHHHHHHHh---cC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLI---EG-------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~---~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..++++.+.+. .. ....+-+.|+|.+|+||||||+.+.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3568999988887766543 21 11234588999999999999999997
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.83 E-value=0.0037 Score=69.64 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++++.+++... ....+-|-|+|.+|+|||++|+++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999999998887642 23356788999999999999999987
No 214
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.83 E-value=0.00047 Score=63.73 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEec
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDD 269 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDd 269 (821)
-..++|+|..|+|||||++.+++..... .+ .++++....-... .+..+.-+||+||
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~----------------------~~~~~~~lLilDE 91 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT----------------------DAAFEAEYLAVDQ 91 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC----------------------GGGGGCSEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH----------------------HHHhCCCEEEEeC
Confidence 5689999999999999999999832211 11 2566665443221 0112456889999
Q ss_pred CCCH--HHHHHHHHhCCC-CCCC-cEEEEEec
Q 045113 270 VWSI--EVWDIIREILPD-NQNG-SRVLITLA 297 (821)
Q Consensus 270 v~~~--~~~~~l~~~l~~-~~~g-s~iiiTtr 297 (821)
+... ..-+.+...+.. ...| ++||+||+
T Consensus 92 ~~~~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 92 VEKLGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred ccccChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 9642 112222222111 1123 35888887
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.81 E-value=0.0019 Score=71.92 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=38.0
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.+++.++..|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997643 34567999999999999999987
No 216
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.72 E-value=0.004 Score=65.06 Aligned_cols=46 Identities=22% Similarity=0.238 Sum_probs=37.7
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|++..+.++.+.+..-......|-|+|.+|+|||++|+.+.+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 3589999999999998876333345677999999999999999987
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.69 E-value=0.004 Score=68.87 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCeeechhhHHHHHHHHh---cC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHH
Q 045113 166 NRDTVGLDDRMEELLDLLI---EG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYAD 235 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~---~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 235 (821)
-.+++|.++.++++.+.+. .. ..-.+-|.++|.+|+||||||+.+.+ +....| +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH-
Confidence 3469999988877766543 21 11234478999999999999999998 333222 23333322110
Q ss_pred HHHHHHHHHhCCc-h-h-HHHHHHHhCCCcEEEEEecCCCH----------------HHHHHHHHhCC--CCCCCcEEEE
Q 045113 236 QILDIIIKFLMPS-S-R-LIILHEYLMTKRYLIVIDDVWSI----------------EVWDIIREILP--DNQNGSRVLI 294 (821)
Q Consensus 236 ~~~~~i~~~l~~~-~-~-~~~l~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~l~--~~~~gs~iii 294 (821)
..+. . . ...+.......+.+|+||++... .....+...+. ....+..||.
T Consensus 89 ---------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIa 159 (476)
T 2ce7_A 89 ---------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMA 159 (476)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEE
T ss_pred ---------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEE
Confidence 0000 0 0 12233333467899999999531 12333333222 1233567777
Q ss_pred Eecchhhh
Q 045113 295 TLAKIDTV 302 (821)
Q Consensus 295 Ttr~~~v~ 302 (821)
||...+..
T Consensus 160 aTn~~~~L 167 (476)
T 2ce7_A 160 ATNRPDIL 167 (476)
T ss_dssp EESCGGGS
T ss_pred ecCChhhh
Confidence 88776554
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.67 E-value=0.0084 Score=71.30 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=38.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997654 45568999999999999999987
No 219
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0095 Score=62.05 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=72.2
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCc-ccc-cccceeEEEEcCC-CCCHHHHHHHHHHHhCC
Q 045113 171 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGN-YVK-HYFDCHAWVQEPY-TCYADQILDIIIKFLMP 247 (821)
Q Consensus 171 Gr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~-~~~-~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 247 (821)
|-++.++.+...+..+. ....-++|.+|+||||+|+.+.+.. ... .+.+ ..++..+. ..++.++- ++.+.+..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~ir-~li~~~~~ 76 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIR-TIKDFLNY 76 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHH-HHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHHH-HHHHHHhh
Confidence 44566677777777665 6788999999999999999987621 111 2233 34555443 34444432 23333221
Q ss_pred chhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 248 SSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 248 ~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
. -..+++-++|+|++.. ....+.+...+....+.+.+|++|.+.
T Consensus 77 ~--------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 77 S--------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp C--------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred c--------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 1 0124677999999974 456777777776666678888877554
No 220
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.38 E-value=0.022 Score=60.33 Aligned_cols=117 Identities=11% Similarity=0.013 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCc---ccc-----------------cccceeEEEEcC---
Q 045113 173 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGN---YVK-----------------HYFDCHAWVQEP--- 229 (821)
Q Consensus 173 ~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~---~~~-----------------~~F~~~~wv~~s--- 229 (821)
++..+.+...+..+. -...+-++|.+|+||||+|+.+.+.- ... .|+| ..++...
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 455666666666543 24578899999999999998887521 100 1233 2344332
Q ss_pred CCCCHHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 230 YTCYADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 230 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
....+.++ +++.+.+... -..+++-++|+|++.. ....+.+...+.....+..+|++|.+.+
T Consensus 86 ~~~~i~~i-r~l~~~~~~~--------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEH--------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSC--------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCCHHHH-HHHHHHHhhc--------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 22333332 2333332211 0135678999999974 3556777777766666778777776653
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.36 E-value=0.0041 Score=74.87 Aligned_cols=44 Identities=16% Similarity=0.349 Sum_probs=38.3
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999997754 34568999999999999999987
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.17 E-value=0.0071 Score=71.83 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=38.2
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|++.+++++...|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998754 34477999999999999999987
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.17 E-value=0.025 Score=55.54 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHH
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQIL 238 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 238 (821)
.-.++.|+|.+|+||||||..+.. ..=..++|++....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH
Confidence 456999999999999999999886 112467888877766665554
No 224
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.16 E-value=0.016 Score=54.64 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=51.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHh------------------CCchhHH
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFL------------------MPSSRLI 252 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l------------------~~~~~~~ 252 (821)
.+|.|.|++|+||||+|+.+ . +.. |. +++ ..++.+.....- +...-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~--~~g--~~---~i~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-K--ERG--AK---VIV------MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR 67 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-H--HTT--CE---EEE------HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-H--HCC--Cc---EEE------HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH
Confidence 47999999999999999999 4 222 21 222 223333322221 1111134
Q ss_pred HHHHHh-CCCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhh
Q 045113 253 ILHEYL-MTKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDT 301 (821)
Q Consensus 253 ~l~~~l-~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v 301 (821)
.+.+.+ ....-.+|+|++....+++.+..... ....+|.-..+..+
T Consensus 68 ~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~ 114 (179)
T 3lw7_A 68 LCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG---DSVYIVAVHSPPKI 114 (179)
T ss_dssp HHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC---SCEEEEEEECCHHH
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC---CCcEEEEEECCHHH
Confidence 455555 23445688899976666666655443 23445444444333
No 225
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.11 E-value=0.0041 Score=65.01 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=48.6
Q ss_pred hhHHHHHHHHhcCCC-CceEEEEEcCCCChHHHHHHHHhcCcccc-cccceeEEEEcCCCCCHHHHHHHHHHHhCCchhH
Q 045113 174 DRMEELLDLLIEGPP-QLSAVTILDSIGLDKTAFAAEAYSGNYVK-HYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRL 251 (821)
Q Consensus 174 ~~~~~i~~~L~~~~~-~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 251 (821)
..++.+.+++..... ....+.++|.+|+|||+||+++++ ... ..-..+++++++ ++..++........ .
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~~------~l~~~l~~~~~~~~-~ 205 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHFP------SFAIDVKNAISNGS-V 205 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEHH------HHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEHH------HHHHHHHHHhccch-H
Confidence 344455566654322 246888999999999999999998 333 322345555543 34444433222111 0
Q ss_pred HHHHHHhCCCcEEEEEecCCC
Q 045113 252 IILHEYLMTKRYLIVIDDVWS 272 (821)
Q Consensus 252 ~~l~~~l~~kr~LlVlDdv~~ 272 (821)
..+.+.+.+ .-+|||||+..
T Consensus 206 ~~~~~~~~~-~~lLiiDdig~ 225 (308)
T 2qgz_A 206 KEEIDAVKN-VPVLILDDIGA 225 (308)
T ss_dssp CCTTHHHHT-SSEEEEETCCC
T ss_pred HHHHHHhcC-CCEEEEcCCCC
Confidence 111111222 23899999953
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.05 E-value=0.012 Score=61.01 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+.+.++|.+|+|||+||+++++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999998
No 227
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.92 E-value=0.024 Score=63.02 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=35.6
Q ss_pred CCCCCeeechhhHHHHHHHHh---cCC-------CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 164 FKNRDTVGLDDRMEELLDLLI---EGP-------PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..-.+++|.+..++++.+... ... .-.+-|.|+|.+|+||||||+.+..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344579999988777766543 210 1123389999999999999999998
No 228
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.87 E-value=0.0032 Score=65.11 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEc--CCCC-----CHHHHHHHHHHHhCCchhHHHHHHHhCCCc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQE--PYTC-----YADQILDIIIKFLMPSSRLIILHEYLMTKR 262 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~-----~~~~~~~~i~~~l~~~~~~~~l~~~l~~kr 262 (821)
-+++-|+|++|+||||||.++... .-..++|++. .... +.+.+ ...+.+.+...+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~-------------l~~i~~~l~~~~ 184 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVF-------------VDDIARAMLQHR 184 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHH-------------HHHHHHHHHHCS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHH-------------HHHHHHHHhhCC
Confidence 467789999999999999998873 1123456665 2221 22222 233444554455
Q ss_pred EEEEEecCCC
Q 045113 263 YLIVIDDVWS 272 (821)
Q Consensus 263 ~LlVlDdv~~ 272 (821)
+||+|++..
T Consensus 185 -LLVIDsI~a 193 (331)
T 2vhj_A 185 -VIVIDSLKN 193 (331)
T ss_dssp -EEEEECCTT
T ss_pred -EEEEecccc
Confidence 999999954
No 229
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0066 Score=65.07 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=57.8
Q ss_pred CCCCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC
Q 045113 164 FKNRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC 232 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 232 (821)
+.-.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++.+ +....| +.|..+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhh
Confidence 3345788999999998776653 123356688999999999999999998 444444 333333211
Q ss_pred ----C-HHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCC
Q 045113 233 ----Y-ADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVW 271 (821)
Q Consensus 233 ----~-~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~ 271 (821)
. .....++++. ..-...+++|++|+++
T Consensus 220 sk~vGese~~vr~lF~------------~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFV------------MAREHAPSIIFMDEID 251 (405)
T ss_dssp CSSTTHHHHHHHHHHH------------HHHHTCSEEEEEESSS
T ss_pred ccccchHHHHHHHHHH------------HHHHhCCceEeeecch
Confidence 1 1122222221 1123578999999997
No 230
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.012 Score=63.93 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=71.7
Q ss_pred CCCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC-
Q 045113 165 KNRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC- 232 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~- 232 (821)
.-.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||+++.+ +....| +.|..+.-.
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc
Confidence 345788999999988777653 123467788999999999999999998 444333 334433221
Q ss_pred ---CH-HHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCCCH----------------HHHHHHHHhCC--CCCCCc
Q 045113 233 ---YA-DQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVWSI----------------EVWDIIREILP--DNQNGS 290 (821)
Q Consensus 233 ---~~-~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------------~~~~~l~~~l~--~~~~gs 290 (821)
.. ....+.+. ...-...+++|++|+++.. ..+..+...+. ....+.
T Consensus 254 k~~Gese~~ir~~F------------~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 254 KYIGESARIIREMF------------AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp SSSSHHHHHHHHHH------------HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred ccchHHHHHHHHHH------------HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 11 11122211 1122357899999999621 01223333332 233356
Q ss_pred EEEEEecchhhh
Q 045113 291 RVLITLAKIDTV 302 (821)
Q Consensus 291 ~iiiTtr~~~v~ 302 (821)
.||.||...+..
T Consensus 322 ivI~ATNrp~~L 333 (437)
T 4b4t_L 322 KIIMATNRPDTL 333 (437)
T ss_dssp EEEEEESSTTSS
T ss_pred EEEEecCCchhh
Confidence 778888766554
No 231
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.79 E-value=0.0097 Score=57.18 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=39.2
Q ss_pred HhhccCCceeEEEeCCC-CCC-----cccccccCCCCceEEeecCCCCc-----cccHHHHhccccceEEecCCccccc-
Q 045113 512 KICEMYKLLRVLDLGSL-VLN-----QYPSEIENLSLLRYLKLNIPSLK-----SLPLSFFNYLLNLYTLDMPFSYIDH- 579 (821)
Q Consensus 512 ~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~- 579 (821)
.++..-+.|+.|+|+++ .+. .+-..+..-++|+.|+|++|.|. .+-..+. .-+.|++|+|++|.|..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHH
Confidence 33444455555555553 443 23333444455555555555544 2333333 34455555555554432
Q ss_pred ----chhhhccCccCceeecCC
Q 045113 580 ----TADEFWKMKKLRHLNFGS 597 (821)
Q Consensus 580 ----lp~~i~~l~~L~~L~L~~ 597 (821)
+-..+..-+.|++|+|++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHhhCCceeEEECCC
Confidence 222333334455555543
No 232
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0075 Score=65.55 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=57.8
Q ss_pred CCCCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC--
Q 045113 164 FKNRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-- 230 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-- 230 (821)
+.-.++.|.++.+++|.+.+.- +-...+=|-++|.+|.|||+||+++.+ +....| +.|..+.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhh
Confidence 3345789999999998876532 223467788999999999999999998 444443 3333222
Q ss_pred --CCCH-HHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCC
Q 045113 231 --TCYA-DQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVW 271 (821)
Q Consensus 231 --~~~~-~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~ 271 (821)
.... .+..+.++. ..-...+++|++|+++
T Consensus 281 sk~vGesek~ir~lF~------------~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 281 QKYVGEGARMVRELFE------------MARTKKACIIFFDEID 312 (467)
T ss_dssp CCSSSHHHHHHHHHHH------------HHHHTCSEEEEEECCT
T ss_pred cccCCHHHHHHHHHHH------------HHHhcCCceEeecccc
Confidence 1111 122222211 1223578999999996
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.76 E-value=0.015 Score=65.88 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=36.0
Q ss_pred CCeeechhhHHHHHHHHhc----CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIE----GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++|.+.-.+.+.+.+.- ......++.++|.+|+||||||+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4588988888887665532 122466899999999999999999997
No 234
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0095 Score=64.74 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=57.9
Q ss_pred CCCCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC
Q 045113 164 FKNRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC 232 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 232 (821)
+.-.++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++.+ +....| +.|..+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhh
Confidence 3345789999999998887653 223456788999999999999999998 444333 334433221
Q ss_pred ----C-HHHHHHHHHHHhCCchhHHHHHHHhCCCcEEEEEecCC
Q 045113 233 ----Y-ADQILDIIIKFLMPSSRLIILHEYLMTKRYLIVIDDVW 271 (821)
Q Consensus 233 ----~-~~~~~~~i~~~l~~~~~~~~l~~~l~~kr~LlVlDdv~ 271 (821)
. ....+++++. ..-...+++|++|+++
T Consensus 244 ~~~~Ge~e~~ir~lF~------------~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFR------------LARENAPSIIFIDEVD 275 (428)
T ss_dssp CSSCSHHHHHHHHHHH------------HHHHTCSEEEEEECTH
T ss_pred ccccchhHHHHHHHHH------------HHHHcCCCeeechhhh
Confidence 1 1122222221 1223578999999985
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.64 E-value=0.032 Score=65.43 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=57.8
Q ss_pred CCCCCeeechhhHHHHHHHHhc----C-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC
Q 045113 164 FKNRDTVGLDDRMEELLDLLIE----G-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC 232 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~----~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 232 (821)
+.-.++.|.++.+++|.+++.- + -...+-|-++|.+|.|||+||+++++ +...+| +.|..+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~--- 272 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP--- 272 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH---
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH---
Confidence 3345688999999888877642 1 12457789999999999999999998 444443 333321
Q ss_pred CHHHHHHHHHHHhCCchh--HHH-HHHHhCCCcEEEEEecCC
Q 045113 233 YADQILDIIIKFLMPSSR--LII-LHEYLMTKRYLIVIDDVW 271 (821)
Q Consensus 233 ~~~~~~~~i~~~l~~~~~--~~~-l~~~l~~kr~LlVlDdv~ 271 (821)
++.....+..+ ... +....+..+.+|+||+++
T Consensus 273 -------~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 273 -------EIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp -------HHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred -------HhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 11111111111 122 222335678999999996
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.57 E-value=0.015 Score=69.11 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCeeechhhHHHHHHHHhcCC-------CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGP-------PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++.+...+.... .....+-++|.+|+|||++|+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999888886421 1234799999999999999999987
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.49 E-value=0.041 Score=54.97 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=41.1
Q ss_pred HHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhC
Q 045113 180 LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH----YFDCHAWVQEPYTCYADQILDIIIKFLM 246 (821)
Q Consensus 180 ~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 246 (821)
-++|..+=+.-.++.|+|.+|+|||||+..+........ .-..++|+.....+....+. .++..++
T Consensus 14 D~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g 83 (243)
T 1n0w_A 14 DKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYG 83 (243)
T ss_dssp HHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred HHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcC
Confidence 333433322356999999999999999999876211111 13578899877766655443 3344443
No 238
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0096 Score=64.76 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=41.6
Q ss_pred CCCCCeeechhhHHHHHHHHhc----C-------CCCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 164 FKNRDTVGLDDRMEELLDLLIE----G-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~----~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
+.-.++.|.++.+++|.+.+.. + -...+=|-++|++|.|||.||+++.+ +....|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 3445799999999998876542 1 23467788999999999999999998 444333
No 239
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.013 Score=63.01 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=41.4
Q ss_pred CCCCCeeechhhHHHHHHHHhc----C-------CCCceEEEEEcCCCChHHHHHHHHhcCccccccc
Q 045113 164 FKNRDTVGLDDRMEELLDLLIE----G-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF 220 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~----~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 220 (821)
+.-.++.|.++.+++|.+.+.. + -...+=|-++|++|.|||.||+++.+ +....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 3345788999999998776643 1 13457789999999999999999998 444433
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.39 E-value=0.013 Score=69.77 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCCeeechhhHHHHHHHHhc-----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIE-----------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..++++.+++.. +-.....|.|+|.+|+||||||+.+.+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999888864 112356799999999999999999998
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.17 E-value=0.014 Score=57.18 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555555544334578999999999999999999886
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.16 E-value=0.065 Score=56.32 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccc----cceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 181 DLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHY----FDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 181 ~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
..|..+=+.-.++.|+|.+|+||||||..+......... =..++|++....++..++.+ +++.++.
T Consensus 98 ~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~ 167 (324)
T 2z43_A 98 GLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGL 167 (324)
T ss_dssp HHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred HhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCC
Confidence 334333233569999999999999999888753211111 24789999888887776654 3455544
No 243
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.15 E-value=0.019 Score=55.83 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=33.3
Q ss_pred chhhHHHHHHHHhcC-CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 172 LDDRMEELLDLLIEG-PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 172 r~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
|+..++++.+.+... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 556777888888753 33568999999999999999999886
No 244
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.08 E-value=0.01 Score=62.88 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCeeechhhHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++.+...+..+ ......+.++|.+|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45788888888776666542 23356799999999999999999998
No 245
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.07 E-value=0.24 Score=48.96 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=32.3
Q ss_pred HHHHHHhCCCcEEEEEecCCCH---HHHHHHHHh-CCCCCCCcEEEEEecchhhh
Q 045113 252 IILHEYLMTKRYLIVIDDVWSI---EVWDIIREI-LPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 252 ~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~-l~~~~~gs~iiiTtr~~~v~ 302 (821)
-.+.+.|-.++-+++||..-.. ..-..+... +.....|..||++|.+...+
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHH
Confidence 3455666677789999998643 334445443 23333467788888876655
No 246
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.07 E-value=0.11 Score=51.63 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999873
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.06 E-value=0.035 Score=53.06 Aligned_cols=108 Identities=13% Similarity=-0.023 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC---CCCHHHHHHHHHH-------Hh--CCc---hh----
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY---TCYADQILDIIIK-------FL--MPS---SR---- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~-------~l--~~~---~~---- 250 (821)
-..|-|++-.|.||||.|-.+.- +..++=-.+.++...+ ......+++.+.- .. ... .+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 34566667777999999877665 2222211334443332 2233333333200 00 000 01
Q ss_pred ---HHHHHHHhCCCcE-EEEEecCCCH-----HHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 251 ---LIILHEYLMTKRY-LIVIDDVWSI-----EVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 251 ---~~~l~~~l~~kr~-LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
...+.+.+.+.+| |||||++-.. ...+++...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 5666677766555 9999998432 23344544444444567899999986
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.02 E-value=0.046 Score=57.85 Aligned_cols=88 Identities=22% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh-----
Q 045113 177 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR----- 250 (821)
Q Consensus 177 ~~i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----- 250 (821)
..+-..|. .+=+.-.++.|+|.+|+||||||..+... ....=..++|++....++.. .++.++...+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~ 119 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLIS 119 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhh
Confidence 34444454 34334679999999999999999998863 22222357888887777654 3444443311
Q ss_pred --------HHHHHHHhC-CCcEEEEEecCC
Q 045113 251 --------LIILHEYLM-TKRYLIVIDDVW 271 (821)
Q Consensus 251 --------~~~l~~~l~-~kr~LlVlDdv~ 271 (821)
...+...++ .+.-++|+|.+.
T Consensus 120 ~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 120 QPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 222333332 455689999874
No 249
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.01 E-value=0.12 Score=54.82 Aligned_cols=67 Identities=13% Similarity=0.051 Sum_probs=44.4
Q ss_pred HHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc----ccceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 180 LDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH----YFDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 180 ~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
-.+|..+=+.-.++.|+|.+|+||||||..+........ .=..++|++....++...+.+ ++..++.
T Consensus 112 D~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 112 DKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp HHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 333434434467999999999999999998876322211 224788999988888776654 3444443
No 250
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.94 E-value=0.028 Score=67.63 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=68.1
Q ss_pred CeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC---HHHH
Q 045113 168 DTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY---ADQI 237 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~---~~~~ 237 (821)
.++|.+..++.+...+... ......+.|+|.+|+|||++|+.+.+ .....=...+.+..+.-.. ...+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~--~~~~~~~~~i~i~~~~~~~~~~~s~l 636 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHAVSRL 636 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH--HHHSSGGGEEEECTTTCCSSGGGGGC
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhccchhHHHHH
Confidence 5799999999988877542 11246889999999999999999987 2211111233444433221 1111
Q ss_pred HHHHHHHhCCchhHHHHHHHhC-CCcEEEEEecCCC--HHHHHHHHHhCCCCC-----------CCcEEEEEecc
Q 045113 238 LDIIIKFLMPSSRLIILHEYLM-TKRYLIVIDDVWS--IEVWDIIREILPDNQ-----------NGSRVLITLAK 298 (821)
Q Consensus 238 ~~~i~~~l~~~~~~~~l~~~l~-~kr~LlVlDdv~~--~~~~~~l~~~l~~~~-----------~gs~iiiTtr~ 298 (821)
...-....+... ...+...+. ...-+|+||++.. .+..+.+...+..+. .+..||+||..
T Consensus 637 ~g~~~~~~G~~~-~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 637 IGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp ---------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred cCCCCCCcCccc-cchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 100000001100 112222222 2346899999964 345666666555331 24457777763
No 251
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.93 E-value=0.011 Score=61.72 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=37.1
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++.+...+... ......+-++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999998888641 11245678999999999999999987
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.93 E-value=0.069 Score=56.06 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=44.0
Q ss_pred HHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc---------cc-----ceeEEEEcCCCCCHHHHHHHHHHHhC
Q 045113 181 DLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH---------YF-----DCHAWVQEPYTCYADQILDIIIKFLM 246 (821)
Q Consensus 181 ~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~ 246 (821)
.+|..+=+.-.++-|+|.+|+||||||..+........ .. ..++|++....++..++.+. ++.++
T Consensus 89 ~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g 167 (322)
T 2i1q_A 89 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAG 167 (322)
T ss_dssp HHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHT
T ss_pred HhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcC
Confidence 33433323467999999999999999988775321111 11 47899999888887776643 44554
Q ss_pred C
Q 045113 247 P 247 (821)
Q Consensus 247 ~ 247 (821)
.
T Consensus 168 ~ 168 (322)
T 2i1q_A 168 I 168 (322)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.80 E-value=0.13 Score=52.89 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=49.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccc--ceeEEEEcCCCCCHHHHHHHHHHHhCCchh---------H----HHHHH
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVKHYF--DCHAWVQEPYTCYADQILDIIIKFLMPSSR---------L----IILHE 256 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~----~~l~~ 256 (821)
++-|.|.+|+||||||..+.. .....+ ..++||+....++.. .+++++...+ . ..+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 789999999999999988765 233222 468899988888754 3666665432 1 22222
Q ss_pred Hh----CCCcEEEEEecCC
Q 045113 257 YL----MTKRYLIVIDDVW 271 (821)
Q Consensus 257 ~l----~~kr~LlVlDdv~ 271 (821)
.+ ..+.-+||+|-|-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 3467799999884
No 254
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.78 E-value=0.011 Score=60.26 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=35.8
Q ss_pred CCCeeechhhHHHHHHHHhc----------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIE----------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..++.+.+.+.. +....+-+.++|.+|+|||+||+.+++
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 35699999998888776641 111123477999999999999999998
No 255
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.63 E-value=0.18 Score=49.62 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCccc---cc-ccceeEEEEcCCCCCHH
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYV---KH-YFDCHAWVQEPYTCYAD 235 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~s~~~~~~ 235 (821)
.-.+++|+|..|+|||||++.+...... .. .-..++|+.-...+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 3579999999999999999998752111 11 23457888765554443
No 256
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.59 E-value=0.0095 Score=63.40 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=61.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeE-EEEcCCCCCHHHHHHHHHHH--hCCc-hh-HHHHHHHhCCCcEEE
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHA-WVQEPYTCYADQILDIIIKF--LMPS-SR-LIILHEYLMTKRYLI 265 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~--l~~~-~~-~~~l~~~l~~kr~Ll 265 (821)
.+|+|+|..|+|||||.+.+.. .+.......+ .+.-.-.+..... ..+..+ .... .. ...+...|...+=+|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~e~~~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPIEFVHESK-KCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcHHhhhhcc-ccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 4999999999999999998876 2222112222 2211111100000 000000 0000 00 567888888899999
Q ss_pred EEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 266 VIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 266 VlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
++|.+.+.+.++.+.... ..|.-||+||...+.+
T Consensus 201 llDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred ecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999877776655442 2366689998766655
No 257
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.55 E-value=0.044 Score=52.56 Aligned_cols=111 Identities=11% Similarity=0.003 Sum_probs=57.7
Q ss_pred CCCCceEEEeecC-CCCccchhhhHHhhccCCceeEEEeCCCCCC-----cccccccCCCCceEEeecCCCCc-----cc
Q 045113 488 YYPHLHSLLYFTS-ESDHLDHIDWQKICEMYKLLRVLDLGSLVLN-----QYPSEIENLSLLRYLKLNIPSLK-----SL 556 (821)
Q Consensus 488 ~~~~LrsL~l~~~-~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~l 556 (821)
..+.|++|.+.++ .........+...+..-+.|+.|+|++|.+. .+...+..-+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4556666666653 3332122234455555566777777777665 23344444556777777776665 22
Q ss_pred cHHHHhccccceEEecCCc---ccc-----cchhhhccCccCceeecCCcc
Q 045113 557 PLSFFNYLLNLYTLDMPFS---YID-----HTADEFWKMKKLRHLNFGSIT 599 (821)
Q Consensus 557 p~~i~~~L~~L~~L~L~~~---~l~-----~lp~~i~~l~~L~~L~L~~~~ 599 (821)
-..+. .-+.|++|+|+++ .+. .+...+..-+.|+.|+++.+.
T Consensus 119 a~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23333 3345777777644 222 123334444556666665443
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.46 E-value=0.018 Score=54.18 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 259
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.42 E-value=0.1 Score=61.90 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=37.1
Q ss_pred CCeeechhhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++.+...+... ......+-++|.+|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46899999998888877532 12345789999999999999999987
No 260
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.41 E-value=0.025 Score=60.65 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=36.1
Q ss_pred CeeechhhHHHHHHHHh-------------cCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 168 DTVGLDDRMEELLDLLI-------------EGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~-------------~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++|.+..++.+...+. ........|.++|.+|+|||++|+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 37899999999888883 1112346789999999999999999998
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.38 E-value=0.097 Score=55.76 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=53.3
Q ss_pred HHHHHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh----
Q 045113 176 MEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR---- 250 (821)
Q Consensus 176 ~~~i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---- 250 (821)
...+-..|. .+=+.-.++-|.|.+|+||||||..+... ....=..++|++....++.. .+..++...+
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i 131 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLV 131 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHcee
Confidence 334444454 23233568889999999999999887762 22222368999988877654 2334433211
Q ss_pred ---------HHHHHHHhC-CCcEEEEEecCC
Q 045113 251 ---------LIILHEYLM-TKRYLIVIDDVW 271 (821)
Q Consensus 251 ---------~~~l~~~l~-~kr~LlVlDdv~ 271 (821)
...+.+..+ ...-+||+|.+.
T Consensus 132 ~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 132 SQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 233333333 344588888873
No 262
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.37 E-value=0.037 Score=61.28 Aligned_cols=47 Identities=23% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCCeeechhhHHHHHH---HHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLD---LLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~---~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...++|.+..++.+.. ++..+....+-+-++|.+|+|||++|+.+.+
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3679999998886544 4444433346788999999999999999998
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.29 E-value=0.02 Score=54.17 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.26 E-value=0.023 Score=54.53 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+|+|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 265
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.25 E-value=0.13 Score=55.34 Aligned_cols=69 Identities=12% Similarity=-0.014 Sum_probs=42.9
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccc----cccceeEEEEcCCCCCHHHHHHHHHHHhCC
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVK----HYFDCHAWVQEPYTCYADQILDIIIKFLMP 247 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 247 (821)
.+-++|..+=..-.++.|+|.+|+|||||+..++-..... ..-..++|++....+....+. .+++.++.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 3334444442345799999999999999999664211111 123468899887777665543 35555554
No 266
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.25 E-value=0.2 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999985
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.24 E-value=0.16 Score=53.80 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=39.0
Q ss_pred HHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccc----ceeEEEEcCCCCCHHHHHHHHHHHh
Q 045113 182 LLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF----DCHAWVQEPYTCYADQILDIIIKFL 245 (821)
Q Consensus 182 ~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~~~~~i~~~l 245 (821)
.|..+=+.-.++.|+|.+|+|||||+..+.......... ..++|++....+....+ ..+++..
T Consensus 123 lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 123 LLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp HHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 343332346899999999999999999988632111111 24588887666544443 2344443
No 268
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.22 E-value=0.046 Score=48.81 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=39.6
Q ss_pred eEEEeCCCCCC--cccccccCCCCceEEeecCCCCccccHHHHhccccceEEecCCcc
Q 045113 521 RVLDLGSLVLN--QYPSEIENLSLLRYLKLNIPSLKSLPLSFFNYLLNLYTLDMPFSY 576 (821)
Q Consensus 521 r~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~ 576 (821)
.+++.++..++ .+|..+. .+|++|+|++|.|..+|......+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777777777 7775443 357888888888888887665477888888888773
No 269
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.19 E-value=0.023 Score=55.13 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 270
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.13 E-value=0.046 Score=56.31 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 187 PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 187 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999999998876
No 271
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.05 E-value=0.031 Score=59.02 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=36.4
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|++..++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 358899999999988887643 578999999999999999987
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.03 E-value=0.026 Score=53.44 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 273
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.98 E-value=0.12 Score=54.78 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=38.5
Q ss_pred HHHHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHH
Q 045113 177 EELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYAD 235 (821)
Q Consensus 177 ~~i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 235 (821)
..+-..|. .+=+.-+++.|+|.+|+||||||..+... ....=..++|++....++..
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH
Confidence 34444454 34234679999999999999999888752 22222367899888776653
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.98 E-value=0.043 Score=57.65 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=32.5
Q ss_pred eechhhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 170 VGLDDRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 170 vGr~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
|+.+.-.+++++.+... .+....|.|+|++|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44556667777776532 33467799999999999999998887
No 275
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.93 E-value=0.042 Score=49.11 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred eEEeecCCCCc--cccHHHHhccccceEEecCCcccccchh-hhccCccCceeecCCccc
Q 045113 544 RYLKLNIPSLK--SLPLSFFNYLLNLYTLDMPFSYIDHTAD-EFWKMKKLRHLNFGSITL 600 (821)
Q Consensus 544 r~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~ 600 (821)
..++.++++++ .+|..+. .+|++|+|++|.+..+|. .+..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47788888888 8886554 579999999999999976 457799999999998876
No 276
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.93 E-value=0.042 Score=61.18 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=36.2
Q ss_pred CeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 168 DTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 168 ~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHH
Confidence 48899999999888887654 688999999999999999998
No 277
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.88 E-value=0.03 Score=57.27 Aligned_cols=47 Identities=23% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCCCeeechhhHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 165 KNRDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 165 ~~~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.++.|.++.+++|.+.+... ..... +.++|.+|+||||||+.+..
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 3456889999888887755321 11122 99999999999999999997
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.79 E-value=0.026 Score=53.17 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.76 E-value=0.12 Score=54.91 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=39.0
Q ss_pred HHHHHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHH
Q 045113 176 MEELLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYAD 235 (821)
Q Consensus 176 ~~~i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 235 (821)
...+-.+|. .+=+.-+++.|.|.+|+||||||..+... ....=..++|++....++..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI 106 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH
Confidence 334444454 33234579999999999999999888762 22222368899988777643
No 280
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.75 E-value=0.03 Score=52.49 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999999987
No 281
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.69 E-value=0.036 Score=55.94 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCCeeechhhHHHHHHHHhc--C-------C-CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIE--G-------P-PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~--~-------~-~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|.+..+.++.+.... . . .-.+-+.|+|.+|+||||||+.+..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34688988777776554431 1 0 0112289999999999999999997
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.67 E-value=0.031 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.034 Score=52.88 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-++++|+|..|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.60 E-value=0.047 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 285
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.57 E-value=0.0098 Score=56.95 Aligned_cols=102 Identities=14% Similarity=0.014 Sum_probs=48.9
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC--CCCHHHHHHHHHHHhCCc------hhHHHHHHHhCCCc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY--TCYADQILDIIIKFLMPS------SRLIILHEYLMTKR 262 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~------~~~~~l~~~l~~kr 262 (821)
.++.|+|..|+||||++..+....... ... ++.+.... .+... .+...++.. .+...+.+.+.++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~-v~~~~~~~d~r~~~~----~i~s~~g~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KKK-VAVFKPKIDSRYHST----MIVSHSGNGVEAHVIERPEEMRKYIEEDT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCE-EEEEEEC-----CCC----EECC----CEECEEESSGGGGGGGCCTTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCe-EEEEeeccccccCcc----cEEecCCCceeeEEECCHHHHHHHhcCCC
Confidence 478899999999999986555421111 122 22222111 00000 000000100 01233334444456
Q ss_pred EEEEEecCCCH-HHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 263 YLIVIDDVWSI-EVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 263 ~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
-+|++|.+... .+|......+.+. |..|++|.+..+
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred CEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 69999998643 2343333222222 678999877543
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.56 E-value=0.034 Score=53.26 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 287
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.44 E-value=0.17 Score=54.99 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEcCCCCC-HHHHHHHHHHH--hC------Cc------hh---
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV-KHYFDCHAWVQEPYTCY-ADQILDIIIKF--LM------PS------SR--- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~-~~~~~~~i~~~--l~------~~------~~--- 250 (821)
-..++|+|..|+|||+|++.+.+ .+ +.+-+.++++-+.+... +.++.+++.+. +. .. .+
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred CCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 45899999999999999999877 32 23346677887777654 56777777665 21 11 01
Q ss_pred ---------HHHHHHHh---CCCcEEEEEecCCC
Q 045113 251 ---------LIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 ---------~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
.-.+.+++ +++.+||++||+..
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 22333333 57999999999943
No 288
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.40 E-value=0.04 Score=54.23 Aligned_cols=103 Identities=15% Similarity=-0.043 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchh----------HHHHHHHhC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSR----------LIILHEYLM 259 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~l~~~l~ 259 (821)
-.++.|+|..|+||||++..+.+ +...+-..++.+...... + ....+++.++.... ...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 46888999999999999877776 333222233333222211 1 11233333333211 222333333
Q ss_pred CCcE-EEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 260 TKRY-LIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 260 ~kr~-LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
+.++ +||+|.+.. .+..+.+..... .|-.||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 3444 999999853 344444433222 2678998888544
No 289
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.34 E-value=0.044 Score=52.47 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.34 E-value=0.031 Score=54.23 Aligned_cols=23 Identities=9% Similarity=0.201 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 291
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.32 E-value=0.04 Score=53.34 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999986
No 292
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.30 E-value=0.33 Score=51.38 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCC--CCCCcEEEEEecchhhh
Q 045113 251 LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPD--NQNGSRVLITLAKIDTV 302 (821)
Q Consensus 251 ~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~iiiTtr~~~v~ 302 (821)
.-.|.+.|..++-+|++|..-.. ..-..+...+.. ...|.-||++|.+..++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 45666778888899999998643 222222222221 12367788888887776
No 293
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.29 E-value=0.15 Score=55.85 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCccc-ccccceeEEEEcCCCCC-HHHHHHHHHHH--hC-------Cc------hh--
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYV-KHYFDCHAWVQEPYTCY-ADQILDIIIKF--LM-------PS------SR-- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~-~~~~~~~i~~~--l~-------~~------~~-- 250 (821)
-..++|.|-.|+|||+|++.+.+ .+ +.+-+.++++-+.+... ..++.+++.+. +. .. .+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred CCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 45789999999999999999887 33 23457788888887764 66777777764 21 11 01
Q ss_pred ----------HHHHHHHhC---CCcEEEEEecCCC
Q 045113 251 ----------LIILHEYLM---TKRYLIVIDDVWS 272 (821)
Q Consensus 251 ----------~~~l~~~l~---~kr~LlVlDdv~~ 272 (821)
.-.+.++++ ++.+|+++||+..
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 344455554 5899999999954
No 294
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.29 E-value=0.045 Score=57.10 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+||+|.|-|||||||.|..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 479999999999999998765554
No 295
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.28 E-value=0.049 Score=53.01 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|+|..|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.28 E-value=0.049 Score=52.70 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|.|+|+.|+||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.28 E-value=0.038 Score=53.65 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 298
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.27 E-value=0.038 Score=58.36 Aligned_cols=87 Identities=13% Similarity=0.020 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccc---ccceeEEEEcCCCCC-HHHHHHHHHHHhCCc-----
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKH---YFDCHAWVQEPYTCY-ADQILDIIIKFLMPS----- 248 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~----- 248 (821)
++++.+..- ..-..++|+|..|+|||||++.+.+ .+.. .++ ++++-+.+... +.++. +.+...
T Consensus 163 raID~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~-~I~~lIGER~~Ev~~~~----~~~~~~vV~at 234 (422)
T 3ice_A 163 RVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCV-LMVLLIDERPEEVTEMQ----RLVKGEVVAST 234 (422)
T ss_dssp HHHHHHSCC-BTTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSE-EEEEEESSCHHHHHHHH----TTCSSEEEEEC
T ss_pred eeeeeeeee-cCCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCee-EEEEEecCChHHHHHHH----HHhCeEEEEeC
Confidence 344544431 1246899999999999999998876 2322 233 33455565532 22332 222111
Q ss_pred -hh-----------HHHHHHHh--CCCcEEEEEecCCC
Q 045113 249 -SR-----------LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 249 -~~-----------~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
++ +-.+.+++ +++.+||++||+..
T Consensus 235 adep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 235 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 00 11122222 58999999999943
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.22 E-value=0.044 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.21 E-value=0.04 Score=52.68 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.21 E-value=0.046 Score=52.36 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 302
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.20 E-value=0.043 Score=53.21 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++|+|..|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.17 E-value=0.046 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.|+|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 304
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.15 E-value=0.06 Score=57.94 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=35.5
Q ss_pred CCeeechhhHHHHHHHHhc----------------------------CCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIE----------------------------GPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~----------------------------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++.|...+.. .......+-++|.+|+|||++|+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3578999998888877720 011245688999999999999999997
No 305
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.14 E-value=0.046 Score=56.08 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=34.7
Q ss_pred CCCCCeeechhhHHHHHHHHhc--C-------C-CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 164 FKNRDTVGLDDRMEELLDLLIE--G-------P-PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~--~-------~-~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..-.+++|.+..++++.+.... . . .-.+-+.|+|.+|+||||||+.+..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 3345789998887776655432 1 0 0112289999999999999999998
No 306
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.13 E-value=0.059 Score=53.99 Aligned_cols=39 Identities=15% Similarity=0.008 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 174 DRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 174 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+.++............+|.|.|++|+||||+|+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344444444433333467899999999999999999976
No 307
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.12 E-value=0.093 Score=51.00 Aligned_cols=22 Identities=14% Similarity=-0.006 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.12 E-value=0.047 Score=55.09 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.11 E-value=0.042 Score=53.16 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.08 E-value=0.037 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|+|++|+||||+|+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 311
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.07 E-value=0.052 Score=52.62 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.05 E-value=0.051 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.04 E-value=0.05 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.02 E-value=0.08 Score=54.49 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 175 RMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 175 ~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++++..+..+ .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444443 23467899999999999999999986
No 315
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.99 E-value=0.44 Score=51.78 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999887775
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.98 E-value=0.038 Score=52.15 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.90 E-value=0.051 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.90 E-value=0.05 Score=54.91 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|+|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999876
No 319
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.89 E-value=0.053 Score=51.41 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998863
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.88 E-value=0.044 Score=52.41 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 321
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.88 E-value=0.051 Score=52.71 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 322
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.86 E-value=0.12 Score=56.38 Aligned_cols=80 Identities=11% Similarity=0.194 Sum_probs=49.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEcCCCC-CHHHHHHHHHHHhCC---------chh---------
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYF-DCHAWVQEPYTC-YADQILDIIIKFLMP---------SSR--------- 250 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~---------~~~--------- 250 (821)
+.++|+|..|+|||||++.+..+ ....+ +.++++-+.+.. ...++.+++...-.. ..+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 36899999999999999998873 33222 455666666654 344555555432000 000
Q ss_pred --HHHHHHHh---CCCcEEEEEecCCC
Q 045113 251 --LIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 --~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
.-.+.+++ +++++|+++||+-.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11233333 58999999999943
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.84 E-value=0.052 Score=52.14 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 324
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.83 E-value=0.084 Score=51.99 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444333 4789999999999999999988863
No 325
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.83 E-value=0.058 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999886
No 326
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.80 E-value=0.073 Score=53.68 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhcC---CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 173 DDRMEELLDLLIEG---PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 173 ~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+...++++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555555543 23467899999999999999999986
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.77 E-value=0.04 Score=52.46 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.76 E-value=0.056 Score=54.81 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.75 E-value=0.055 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-..|.+.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.74 E-value=0.056 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+|.|+|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.73 E-value=0.046 Score=53.15 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|+|+.|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.62 E-value=0.058 Score=53.25 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.61 E-value=0.061 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999994
No 334
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.60 E-value=0.066 Score=52.21 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+|+|..|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 56899999999999999999987
No 335
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.57 E-value=0.062 Score=51.65 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 336
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.55 E-value=0.046 Score=58.07 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 166 NRDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 166 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-..++|.+..++.+...+..+. ..-|-|+|.+|+|||++|+.+.+
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 3458999886666544444322 22388999999999999999987
No 337
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.54 E-value=0.11 Score=55.40 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445688999999999999999988764
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.53 E-value=0.048 Score=51.18 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.53 E-value=0.066 Score=50.04 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+.+++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999887
No 340
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.53 E-value=0.077 Score=52.05 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=29.7
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 171 GLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 171 Gr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+.++..+++...+... ...+|.|+|.+|+|||||+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3445555555555433 378999999999999999998876
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.51 E-value=0.055 Score=52.09 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.45 E-value=0.061 Score=50.22 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.45 E-value=0.061 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.37 E-value=0.099 Score=54.49 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=27.7
Q ss_pred hhHHHHHHHHhcC--CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 174 DRMEELLDLLIEG--PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 174 ~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+..+...+... .....+|+|.|..|+||||||+.+..
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3344444333332 34577999999999999999999875
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.35 E-value=0.048 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=17.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|++|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.29 E-value=0.064 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.27 E-value=0.065 Score=51.31 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 348
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.23 E-value=0.18 Score=55.74 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=61.1
Q ss_pred eeechhhHHHHHHH----HhcCCCCceEEEEEcCCCChHHHHHHHHhcCccccccc-ceeEEEEcCCCCCHHHHHHHHHH
Q 045113 169 TVGLDDRMEELLDL----LIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYF-DCHAWVQEPYTCYADQILDIIIK 243 (821)
Q Consensus 169 ~vGr~~~~~~i~~~----L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~ 243 (821)
+-+...+.++.+.. +..++ ..+.|.|.+|.||||++..+.. .....- ..++.++ .... ..+.+.+
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~--~l~~~~~~~il~~a-~T~~----Aa~~l~~ 92 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE--ALISTGETGIILAA-PTHA----AKKILSK 92 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH--HHHHTTCCCEEEEE-SSHH----HHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH--HHHhcCCceEEEec-CcHH----HHHHHHh
Confidence 44445555555544 43333 3899999999999999988886 332222 2333332 2221 1222222
Q ss_pred HhCCchh-HHHHHHH-----------------hCCCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEEecch
Q 045113 244 FLMPSSR-LIILHEY-----------------LMTKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLITLAKI 299 (821)
Q Consensus 244 ~l~~~~~-~~~l~~~-----------------l~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiTtr~~ 299 (821)
.++.... ...+... ...+--+||+|++.. ...+..+...++ .+.+|++.--..
T Consensus 93 ~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~ 165 (459)
T 3upu_A 93 LSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNK 165 (459)
T ss_dssp HHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTT
T ss_pred hhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHH
Confidence 2222211 1111110 001234889999854 356777777665 466776654433
No 349
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.21 E-value=0.059 Score=52.08 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-++++|+|..|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999875
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.11 E-value=0.054 Score=51.62 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999986
No 351
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.09 E-value=0.15 Score=48.86 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.99 E-value=0.079 Score=51.58 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999999886
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.97 E-value=0.088 Score=54.83 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 367999999999999999999886
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.95 E-value=0.091 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999886
No 355
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.91 E-value=0.12 Score=54.17 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+++|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998876
No 356
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.82 E-value=0.12 Score=56.27 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCeeechhhHHHHHHHHhcC------------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEG------------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++.+...+... ....+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999988887776321 11245688999999999999999987
No 357
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.82 E-value=0.25 Score=52.81 Aligned_cols=107 Identities=14% Similarity=0.190 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeE-EEEcCCCCCHHHHHHHHHHH--hCCch-h-HHHHHHHhCCCcEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHA-WVQEPYTCYADQILDIIIKF--LMPSS-R-LIILHEYLMTKRYL 264 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~~~~~~~~i~~~--l~~~~-~-~~~l~~~l~~kr~L 264 (821)
-.+++|+|..|+||||+++.+.. .+.......+ ++...-.+....- ..+..+ ++... . ...+...|...+=+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhhhhccC-ceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 56899999999999999998876 2221112222 2221111000000 000000 00000 1 45677777777789
Q ss_pred EEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 265 IVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 265 lVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
|++|.+.+.+.+....... ..|.-|+.|+...++.
T Consensus 213 illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 213 IFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 247 (372)
T ss_dssp EEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHH
T ss_pred EEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHH
Confidence 9999998766544433332 2356688887765544
No 358
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.81 E-value=0.087 Score=54.06 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.77 E-value=0.1 Score=52.36 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|.|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999876
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.72 E-value=0.077 Score=51.65 Aligned_cols=23 Identities=4% Similarity=-0.223 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.72 E-value=0.085 Score=53.16 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999995
No 362
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.64 E-value=0.47 Score=45.59 Aligned_cols=51 Identities=14% Similarity=-0.003 Sum_probs=32.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 045113 192 AVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.|.|=|.-|+||||.++.+.+ ..+..-..++++.-.......+..++++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhc
Confidence 377889999999999999988 454443345555544443344444444433
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.64 E-value=0.081 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 364
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.59 E-value=0.22 Score=52.33 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=58.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHh--CCchhHHHHHHHhCCCcEEEEEe
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFL--MPSSRLIILHEYLMTKRYLIVID 268 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~l~~~l~~kr~LlVlD 268 (821)
.+++|+|..|.|||||++.+..- +.. -...+.+.-......... +....-+ ++......+...|..++=+|++|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~~~-~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFKHH-KNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCSSC-SSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeeccccccc-hhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 48999999999999999999872 211 223444432211110000 0000000 12222667778888888899999
Q ss_pred cCCCHHHHHHHHHhCCCCCCCcEEEEEecchh
Q 045113 269 DVWSIEVWDIIREILPDNQNGSRVLITLAKID 300 (821)
Q Consensus 269 dv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~ 300 (821)
.+.+.+.++.+... ..+ +.-+|+||....
T Consensus 248 E~~~~e~~~~l~~~-~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 248 ELRSSEAYDFYNVL-CSG--HKGTLTTLHAGS 276 (330)
T ss_dssp CCCSTHHHHHHHHH-HTT--CCCEEEEEECSS
T ss_pred CCChHHHHHHHHHH-hcC--CCEEEEEEcccH
Confidence 99876666655433 222 222677775443
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.59 E-value=0.099 Score=51.16 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.|.|++|+||||.|+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.57 E-value=0.091 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.|.|++|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.57 E-value=0.094 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.53 E-value=0.094 Score=51.15 Aligned_cols=23 Identities=4% Similarity=-0.083 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 369
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.53 E-value=0.097 Score=50.30 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-++|+|+|..|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 57899999999999999999986
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.51 E-value=0.079 Score=52.07 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999886
No 371
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.49 E-value=0.2 Score=54.79 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCcccccccce-eEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh--------
Q 045113 190 LSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFDC-HAWVQEPYTC-YADQILDIIIKFLMPS--------SR-------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~-------- 250 (821)
-+.++|+|-.|+|||+|| ..+.+. . .-+. ++++-+.+.. .+.++.+++...=... .+
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 457899999999999995 577773 2 2453 4667677664 3556666665421111 01
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHHH
Q 045113 251 ----LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIRE 281 (821)
Q Consensus 251 ----~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~~ 281 (821)
.-.+.+++ +++.+||++||+..- ..+.++..
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl 288 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSL 288 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhh
Confidence 22333444 579999999999543 34444443
No 372
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.49 E-value=0.17 Score=54.83 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=51.8
Q ss_pred eEEEEEcCCCChHHHHHHHHhcCcccccccc----eeEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh-------
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSGNYVKHYFD----CHAWVQEPYTC-YADQILDIIIKFLMPS--------SR------- 250 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~------- 250 (821)
+.++|.|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++.+++.+.=... .+
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999999884332 223 56666666654 4556666655431111 01
Q ss_pred -----HHHHHHHh---CCCcEEEEEecCCC
Q 045113 251 -----LIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 -----~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+..
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 33445555 37999999999953
No 373
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.48 E-value=0.18 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 374
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.46 E-value=0.22 Score=54.44 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCcccccccc-eeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h--------
Q 045113 190 LSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSS--------R-------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~-------- 250 (821)
-..++|+|-.|+|||+|| ..+.+. . .-+ .++++-+.+.. .+.++.+++.+.=.... +
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 457899999999999995 577773 2 244 34667777664 35566766665322110 1
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 ----LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 ----~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
.-.+.+++ +++.+||++||+..- ..+.++.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REis 274 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELS 274 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHH
Confidence 22333444 579999999999542 3344443
No 375
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.41 E-value=0.07 Score=50.17 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.38 E-value=0.092 Score=50.73 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.37 E-value=0.093 Score=51.31 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 378
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.28 E-value=0.15 Score=48.95 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+..+..++.. -+.-..+.|+|.+|+||||+|.++.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4555555543 33345799999999999999988887
No 379
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.22 E-value=0.088 Score=51.83 Aligned_cols=23 Identities=13% Similarity=-0.093 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.|.|++|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.20 E-value=0.091 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+++|+|..|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999998876
No 381
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.19 E-value=0.11 Score=50.79 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.17 E-value=0.055 Score=52.82 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|+|.|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 383
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.16 E-value=0.1 Score=51.09 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.16 E-value=0.12 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.13 E-value=0.083 Score=53.04 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 386
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.06 E-value=0.13 Score=53.38 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999998875
No 387
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.04 E-value=0.16 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++|+|..|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999875
No 388
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.97 E-value=0.18 Score=52.14 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 467999999999999999998886
No 389
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.96 E-value=0.38 Score=50.15 Aligned_cols=56 Identities=18% Similarity=0.047 Sum_probs=38.5
Q ss_pred cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHH
Q 045113 185 EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 185 ~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
.+=..-.++.|.|.+|+||||||..+.......+ ..++|++.. -+..++...+...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 4433457899999999999999988875322222 567777655 4566777666654
No 390
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.94 E-value=0.11 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 56999999999999999998873
No 391
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.88 E-value=0.51 Score=49.84 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 177 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 177 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-++++.|.-= ..-+.++|+|.+|+|||+|++.+.+
T Consensus 163 iraID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhcccc-cCCceEEEecCCCCChhHHHHHHHH
Confidence 3556666431 2245889999999999999998887
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.87 E-value=0.12 Score=50.81 Aligned_cols=106 Identities=9% Similarity=0.049 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCC-C----------CCHHHHHHHHHHH------h--CCc--
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPY-T----------CYADQILDIIIKF------L--MPS-- 248 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~----------~~~~~~~~~i~~~------l--~~~-- 248 (821)
-.+++|+|..|+|||||.+.+...... ..+...+.++-.. . |.-......+... + ...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p-~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL-YDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT-TTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-CceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 469999999999999999998862111 0122222222110 0 1112223322220 0 010
Q ss_pred -hhHHHHHHHhCCCcEEEEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 249 -SRLIILHEYLMTKRYLIVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 249 -~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
.....+.+.+..- -++||| + +......+...++ .|.-|+|+|-+...+
T Consensus 95 g~~~~~v~~~l~~G-~illLD-L-D~~~~~~i~~~l~---~~~tI~i~th~~~~l 143 (219)
T 1s96_A 95 GTSREAIEQVLATG-VDVFLD-I-DWQGAQQIRQKMP---HARSIFILPPSKIEL 143 (219)
T ss_dssp EEEHHHHHHHHTTT-CEEEEE-C-CHHHHHHHHHHCT---TCEEEEEECSSHHHH
T ss_pred CCCHHHHHHHHhcC-CeEEEE-E-CHHHHHHHHHHcc---CCEEEEEECCCHHHH
Confidence 0145566677654 467788 4 4455556666665 467888888776554
No 393
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.83 E-value=0.23 Score=51.67 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 394
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.81 E-value=0.13 Score=51.38 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+++|+|..|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999986
No 395
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.75 E-value=0.12 Score=50.14 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 396
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.66 E-value=0.21 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 397
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.63 E-value=0.089 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHh-c
Q 045113 190 LSAVTILDSIGLDKTAFAAEAY-S 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~-~ 212 (821)
-.+++|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 398
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.47 E-value=0.14 Score=48.11 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67999999999999999999886
No 399
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.46 E-value=0.14 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988875
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.45 E-value=0.25 Score=56.76 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=36.5
Q ss_pred CCeeechhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 167 RDTVGLDDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 167 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899998888888777765 3889999999999999999997
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.40 E-value=0.11 Score=50.93 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 402
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.39 E-value=0.22 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999985
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.32 E-value=0.13 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 404
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.32 E-value=0.21 Score=54.80 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCcccccccc-eeEEEEcCCCCC-HHHHHHHHHHHhCCc--------hh--------
Q 045113 190 LSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMPS--------SR-------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~--------~~-------- 250 (821)
-..++|+|-.|+|||+|| ..+.+. .. -+ .++++-+.+... +.++.+++...=... .+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 457899999999999995 578773 22 34 346666776643 445555554321110 00
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCCH-HHHHHH
Q 045113 251 ----LIILHEYL--MTKRYLIVIDDVWSI-EVWDII 279 (821)
Q Consensus 251 ----~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l 279 (821)
.-.+.+++ +++.+||++||+..- ..+.++
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REi 274 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQM 274 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHH
Confidence 22223333 589999999999543 334444
No 405
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.24 E-value=0.23 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.19 E-value=0.13 Score=50.17 Aligned_cols=21 Identities=14% Similarity=0.011 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 407
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.19 E-value=0.16 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888899999999999999874
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.16 E-value=0.16 Score=52.50 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+||||+++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999998876
No 409
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.15 E-value=0.46 Score=51.86 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCcccccccc-eeEEEEcCCCCC-HHHHHHHHHHHhCCc---------hh-------
Q 045113 190 LSAVTILDSIGLDKTAFA-AEAYSGNYVKHYFD-CHAWVQEPYTCY-ADQILDIIIKFLMPS---------SR------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~---------~~------- 250 (821)
-+.++|.|-.|+|||+|| ..+.|. .+-+ .++++-+.+..+ +.++.+++.+.=... .+
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 457899999999999996 577772 2233 356777777653 566777655431111 01
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 045113 251 ----LIILHEYL--MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 ----~~~l~~~l--~~kr~LlVlDdv~~ 272 (821)
.-.+.+++ +++.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 22333333 58999999999954
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.12 E-value=0.14 Score=50.46 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 411
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.11 E-value=0.15 Score=53.43 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|+|.|..|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 412
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.08 E-value=0.18 Score=54.94 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccc--cceeEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh--------
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHY--FDCHAWVQEPYTC-YADQILDIIIKFLMPS--------SR-------- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~-------- 250 (821)
-..++|.|-.|+|||+|+.++.++....+. =+.++++-+.+.. .+.++.+++...=... .+
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 356788999999999999999885433221 1356666666654 4566776666531111 01
Q ss_pred ----HHHHHHHhC---CCcEEEEEecCC
Q 045113 251 ----LIILHEYLM---TKRYLIVIDDVW 271 (821)
Q Consensus 251 ----~~~l~~~l~---~kr~LlVlDdv~ 271 (821)
+-.+.++++ ++.+|+++||+.
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 334445554 699999999973
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.02 E-value=0.16 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.|.|++|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.01 E-value=0.26 Score=54.18 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY 233 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 233 (821)
.-.+|+|+|..|+|||||++.+.. ..+. -...+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhh-cCCeEEEecCcccc
Confidence 457999999999999999999886 2221 23455554444444
No 415
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.01 E-value=0.27 Score=52.51 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 177 EELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 177 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+++-+..+-+.-.+++|+|.+|.|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444443434467999999999999999999996
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.96 E-value=0.25 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+|.|.|+.|+||||+++.+.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 417
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.95 E-value=0.17 Score=46.87 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 418
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.93 E-value=0.26 Score=53.74 Aligned_cols=39 Identities=18% Similarity=0.057 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhcC-------CCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 174 DRMEELLDLLIEG-------PPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 174 ~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++.+.|... ....++|.++|.||+||||++..+..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445566666432 13478999999999999999888775
No 419
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.85 E-value=0.37 Score=49.69 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccc-eeEEEEcCCCCCHHHHHHHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD-CHAWVQEPYTCYADQILDIIIKF 244 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~ 244 (821)
-.+++|+|.+|+|||||++.+... ....-. .++|+.... +..++...+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 469999999999999999998863 222222 456665433 344554444443
No 420
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.80 E-value=0.16 Score=48.16 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 421
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.75 E-value=0.27 Score=49.27 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 422
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.73 E-value=0.19 Score=45.97 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 423
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.72 E-value=0.32 Score=53.33 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCChHHHHH-HHHhcCccc----ccccc-eeEEEEcCCCC-CHHHHHHHHHHHhCCch--------h----
Q 045113 190 LSAVTILDSIGLDKTAFA-AEAYSGNYV----KHYFD-CHAWVQEPYTC-YADQILDIIIKFLMPSS--------R---- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~---- 250 (821)
-..++|+|-.|+|||+|| ..+.+.... ..+-+ .++++-+.+.. .+.++.+++...=.... +
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 457899999999999995 567773221 01244 46677777765 35566666655321110 0
Q ss_pred --------HHHHHHHh--CCCcEEEEEecCCCH-HHHHHHH
Q 045113 251 --------LIILHEYL--MTKRYLIVIDDVWSI-EVWDIIR 280 (821)
Q Consensus 251 --------~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~l~ 280 (821)
.-.+.+++ +++.+||++||+..- ..+.++.
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REis 282 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMS 282 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHH
Confidence 22333444 579999999999543 3344443
No 424
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.70 E-value=0.27 Score=49.52 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999986
No 425
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.64 E-value=0.18 Score=49.91 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 426
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.63 E-value=0.17 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 427
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.58 E-value=0.17 Score=48.27 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568899999999999999998864
No 428
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.57 E-value=0.22 Score=53.90 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccc--------cccc-eeEEEEcCCCC-CHHHHHHHHHHHhCCc--------hh-
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVK--------HYFD-CHAWVQEPYTC-YADQILDIIIKFLMPS--------SR- 250 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~- 250 (821)
-+.++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+.. .+.++.+++.+.=... .+
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999998753331 1111 56666666554 3556666654421011 01
Q ss_pred -----------HHHHHHHh---CCCcEEEEEecCCC
Q 045113 251 -----------LIILHEYL---MTKRYLIVIDDVWS 272 (821)
Q Consensus 251 -----------~~~l~~~l---~~kr~LlVlDdv~~ 272 (821)
+-.+.+++ +++.+|+++||+..
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 33445554 37999999999953
No 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.57 E-value=0.17 Score=51.22 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46999999999999999999986
No 430
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.56 E-value=0.17 Score=51.09 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 431
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.56 E-value=0.14 Score=49.93 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 432
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.55 E-value=2 Score=42.31 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=36.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHh-cCccccccc-ceeEEEEcCCCCCHHHHHHHHHHHhC
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAY-SGNYVKHYF-DCHAWVQEPYTCYADQILDIIIKFLM 246 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~-~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 246 (821)
..++++..+..+ +.+.|.|..|+||||+...+. +........ ...+.+......-..++.+.+...++
T Consensus 65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 455566666654 488999999999998665443 211111222 22333333333334455555555443
No 433
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.53 E-value=0.18 Score=50.69 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999997
No 434
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.51 E-value=0.51 Score=52.13 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCC-HHHHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCY-ADQILDII 241 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 241 (821)
-..++|.|..|+|||+|++.+.+. .+-+.++++-+.+..+ +.++.+++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 458999999999999999998762 2235788888888765 45666654
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.47 E-value=0.2 Score=49.77 Aligned_cols=24 Identities=13% Similarity=0.028 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999886
No 436
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.46 E-value=0.28 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999986
No 437
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.45 E-value=0.24 Score=46.77 Aligned_cols=26 Identities=19% Similarity=0.081 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34677899999999999999999875
No 438
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.43 E-value=0.19 Score=50.28 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999986
No 439
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.43 E-value=0.26 Score=50.84 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988876
No 440
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.33 E-value=0.18 Score=51.19 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45999999999999999999986
No 441
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.25 E-value=0.26 Score=53.46 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.25 E-value=0.18 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 443
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.22 E-value=0.3 Score=49.48 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999986
No 444
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.21 E-value=0.19 Score=49.44 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEP 229 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 229 (821)
-.+++|+|.+|+|||||++.+... ....=..++|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcc
Confidence 468999999999999999998852 22111245566543
No 445
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.21 E-value=0.18 Score=54.50 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 178 ELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 178 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
++.+.|........+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444443323466999999999999999999987
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.18 E-value=0.19 Score=50.95 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|+|||||++.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999973
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.14 E-value=0.19 Score=48.74 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+|.|.|.+|+||+|.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999987
No 448
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.13 E-value=0.19 Score=52.19 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 449
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.10 E-value=0.22 Score=51.74 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999887765
No 450
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.09 E-value=0.21 Score=52.04 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.++|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999973
No 451
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.08 E-value=0.19 Score=48.26 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999864
No 452
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.06 E-value=0.19 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||++.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999986
No 453
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.01 E-value=1.7 Score=51.93 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccc----eeEEEEcCCCC-------CH-----------HHHHHHHHHHhCC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFD----CHAWVQEPYTC-------YA-----------DQILDIIIKFLMP 247 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-------~~-----------~~~~~~i~~~l~~ 247 (821)
-.+++|+|..|.|||||.+.+..- .+.+ |+ .. .+.+.+.. ++ .+-..++++.++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~g-~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVDG-FPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CSTT-CCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcCC-Ccccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 458999999999999999999831 1110 10 01 12233221 11 2233456666666
Q ss_pred chh---------------HHHHHHHhCCCcEEEEEecCCCH---HHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 248 SSR---------------LIILHEYLMTKRYLIVIDDVWSI---EVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 248 ~~~---------------~~~l~~~l~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
..+ .-.|.+.|-.++=+|+||..-+. ..-..+...+.. .|.-||++|.+....
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFL 608 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHH
Confidence 311 34555666677889999998643 222222222222 367788888876554
No 454
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.99 E-value=0.22 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|+|.+|+||||+|..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999988876
No 455
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.94 E-value=0.2 Score=50.22 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 456
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.91 E-value=0.48 Score=55.55 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCCCCeeechhhHHHHHHHHhcC-----------CCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCC
Q 045113 164 FKNRDTVGLDDRMEELLDLLIEG-----------PPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTC 232 (821)
Q Consensus 164 ~~~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 232 (821)
+.-..+.|.++.++++.+.+.-. -...+-|-++|.+|.|||.+|+++.+ +....| +.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~~-- 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIKG-- 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECCH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEecc--
Confidence 44456889999988887776532 12345577999999999999999998 443332 23221
Q ss_pred CHHHHHHHHHHHhCCchh--HHHHHHHh-CCCcEEEEEecCC
Q 045113 233 YADQILDIIIKFLMPSSR--LIILHEYL-MTKRYLIVIDDVW 271 (821)
Q Consensus 233 ~~~~~~~~i~~~l~~~~~--~~~l~~~l-~~kr~LlVlDdv~ 271 (821)
. +++...-+..+ ...+.+.- +..+..|+||+++
T Consensus 545 --~----~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 --P----ELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp --H----HHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred --c----hhhccccchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 1 22222222111 33333333 4578999999995
No 457
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.90 E-value=0.21 Score=50.61 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6888999999999999887775
No 458
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.86 E-value=0.23 Score=52.57 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|+|..|+||||+++.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999988876
No 459
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.83 E-value=0.22 Score=51.12 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 57899999999999999888775
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.83 E-value=0.23 Score=46.98 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 461
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.78 E-value=0.36 Score=50.83 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=25.7
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 179 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 179 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+++-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444433333478999999999999999999873
No 462
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.76 E-value=0.21 Score=50.25 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.+++|+|..|+|||||.+.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 463
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.68 E-value=0.58 Score=46.02 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-..|.|-|+.|+||||+++.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 464
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.61 E-value=0.22 Score=50.93 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|+|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999987
No 465
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.50 E-value=0.22 Score=45.88 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999998864
No 466
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.49 E-value=0.26 Score=46.82 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999998864
No 467
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.46 E-value=0.23 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998864
No 468
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.35 E-value=0.21 Score=45.79 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998764
No 469
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.32 E-value=0.26 Score=49.85 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEE-cCCCCCHHHHHHHHHH--HhCCc-hh-HHHHHHHhCCCcEE
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQ-EPYTCYADQILDIIIK--FLMPS-SR-LIILHEYLMTKRYL 264 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~--~l~~~-~~-~~~l~~~l~~kr~L 264 (821)
-.+++|+|..|+|||||++.+.. .+...+...+++. ..-.+-.... ..+.. .++.. .. ...+.+.|...+=+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 56999999999999999998876 2221122333221 1000000000 00000 00000 01 34555556556778
Q ss_pred EEEecCCCHHHHHHHHHhCCCCCCCcEEEEEecchhhh
Q 045113 265 IVIDDVWSIEVWDIIREILPDNQNGSRVLITLAKIDTV 302 (821)
Q Consensus 265 lVlDdv~~~~~~~~l~~~l~~~~~gs~iiiTtr~~~v~ 302 (821)
|++|...+.+....+.... ..|.-|++||...++.
T Consensus 102 lllDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 102 IFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp EEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred EEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 9999997665443333222 2366788888876654
No 470
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.28 E-value=0.38 Score=50.76 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHhc
Q 045113 188 PQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 188 ~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999998864
No 471
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.27 E-value=0.55 Score=53.28 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCchhHH
Q 045113 173 DDRMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPSSRLI 252 (821)
Q Consensus 173 ~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 252 (821)
..+..+.+..+.. -+++.|.|.+|.||||++..+... .... ...+.+......... .+.+.++... .
T Consensus 191 ~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~Aa~----~L~e~~~~~a--~ 257 (574)
T 3e1s_A 191 SEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGKAAR----RLGEVTGRTA--S 257 (574)
T ss_dssp CHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHHHHH----HHHHHHTSCE--E
T ss_pred CHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHHHHH----HhHhhhcccH--H
Confidence 4455555555553 358889999999999999888762 2211 234444443332222 2222222221 1
Q ss_pred HHHHHhC-------------CCcEEEEEecCCC--HHHHHHHHHhCCCCCCCcEEEEE
Q 045113 253 ILHEYLM-------------TKRYLIVIDDVWS--IEVWDIIREILPDNQNGSRVLIT 295 (821)
Q Consensus 253 ~l~~~l~-------------~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~iiiT 295 (821)
.+.+.+. .+-=+||+|.+.. ...+..+...++ .|.++|+.
T Consensus 258 Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilv 312 (574)
T 3e1s_A 258 TVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLV 312 (574)
T ss_dssp EHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEE
T ss_pred HHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEE
Confidence 1122221 0224899999853 355667766665 45677643
No 472
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.27 E-value=0.38 Score=44.83 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999998764
No 473
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.27 E-value=0.26 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+++|+|.+|+||||++..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998886
No 474
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.24 E-value=0.14 Score=52.63 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.23 E-value=0.24 Score=53.86 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 476
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.21 E-value=0.39 Score=53.31 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..++|.|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 477
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.20 E-value=9.8 Score=40.01 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
....|+|+|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998864
No 478
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.17 E-value=0.31 Score=48.44 Aligned_cols=47 Identities=15% Similarity=0.013 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHH
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDI 240 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 240 (821)
-.++.|.|.+|+||||||..+... ....=..++|++.... ..++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC--HHHHHHH
Confidence 468999999999999998877642 2111235777765543 4444433
No 479
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.11 E-value=0.23 Score=47.13 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 480
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.08 E-value=0.22 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999987
No 481
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.08 E-value=0.25 Score=46.24 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 482
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.01 E-value=0.24 Score=50.65 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999988875
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.99 E-value=0.26 Score=45.49 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.4
Q ss_pred eEEEEEcCCCChHHHHHHHHhc
Q 045113 191 SAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
--|.|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999864
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.99 E-value=0.26 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35899999999999999999987
No 485
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.97 E-value=0.42 Score=49.28 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHhc
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356999999999999999999886
No 486
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.95 E-value=0.25 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.-|.|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998764
No 487
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.93 E-value=0.48 Score=47.80 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 176 MEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 176 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
+.++...+.......-.|+|+|.+|+|||||...+...
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34455555554445678999999999999999998864
No 488
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.89 E-value=0.3 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-|.|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998764
No 489
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.86 E-value=0.27 Score=45.46 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 490
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.78 E-value=0.24 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045113 192 AVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 491
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.74 E-value=0.31 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHhcC
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998864
No 492
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.71 E-value=0.49 Score=47.53 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=26.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhc
Q 045113 179 LLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 179 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
+..+|....+....|.++|.+|.|||++|.++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 4444444324456799999999999999999987
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.67 E-value=0.67 Score=45.13 Aligned_cols=23 Identities=17% Similarity=-0.058 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-..|.|-|..|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 494
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.63 E-value=0.27 Score=49.94 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045113 192 AVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 192 vi~i~G~gGiGKTtLa~~v~~ 212 (821)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999885
No 495
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.54 E-value=0.53 Score=47.75 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCChHHHHHHHHhcC
Q 045113 175 RMEELLDLLIEGPPQLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 175 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
.+.++...+.........|.++|.+|+|||||...+...
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 334444445444444678899999999999999999865
No 496
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.50 E-value=0.36 Score=45.85 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHhcC
Q 045113 189 QLSAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 189 ~~~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999999999864
No 497
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.49 E-value=0.74 Score=59.10 Aligned_cols=86 Identities=19% Similarity=0.067 Sum_probs=54.7
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCChHHHHHHHHhcCcccccccceeEEEEcCCCCCHHHHHHHHHHHhCCc---------
Q 045113 179 LLDLLI-EGPPQLSAVTILDSIGLDKTAFAAEAYSGNYVKHYFDCHAWVQEPYTCYADQILDIIIKFLMPS--------- 248 (821)
Q Consensus 179 i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------- 248 (821)
+-++|. .+=+.-+.|-|+|.+|+||||||.++... ...+=..++|+++...++... ++.++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~ 1487 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQP 1487 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecC
Confidence 444554 33335789999999999999999998763 222213577888887776665 3344411
Q ss_pred ---hh-HHHHHHHh-CCCcEEEEEecCC
Q 045113 249 ---SR-LIILHEYL-MTKRYLIVIDDVW 271 (821)
Q Consensus 249 ---~~-~~~l~~~l-~~kr~LlVlDdv~ 271 (821)
+. ...+++.. ..+.-+||+|.+.
T Consensus 1488 ~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1488 DTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 11 33333333 2467799999994
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.43 E-value=0.3 Score=48.66 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 499
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.39 E-value=0.24 Score=51.24 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHhc
Q 045113 190 LSAVTILDSIGLDKTAFAAEAYS 212 (821)
Q Consensus 190 ~~vi~i~G~gGiGKTtLa~~v~~ 212 (821)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46999999999999999999976
No 500
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.34 E-value=0.29 Score=45.20 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHhcC
Q 045113 191 SAVTILDSIGLDKTAFAAEAYSG 213 (821)
Q Consensus 191 ~vi~i~G~gGiGKTtLa~~v~~~ 213 (821)
--|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998764
Done!