BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045115
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%)
Query: 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60
H+V +V + + +CN+ + + SG+D+I L PG +YF+CGIPGHCQ GQ++ I+V+
Sbjct: 44 FHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIE 58
MH+V V + + CN A K + SG D I L G YFIC PGHCQ+G ++ +
Sbjct: 38 MHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEV 59
MHDV VT+ + C + I H + I LN G Y+IC + HC+ GQ+L I V
Sbjct: 44 MHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60
H+V V Y +C+A + + SG D I L G YFIC PGHC G ++ I +
Sbjct: 33 QHNVVAVNGRGYASCSAPRGARTYSSGQDRIKL-TRGQNYFICSFPGHCGGGMKIAINAK 91
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 HDVHEV-TEADYVACNAKASIKHHISGSDAIT-LNAPGIYYFICGIPGHCQAGQRLRIEV 59
H+VHE+ T+ + ACN S S I L+ G++YF+C + HC GQ+L I V
Sbjct: 47 HNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH GQ +I V+
Sbjct: 132 GTYYYVCQIPGHAATGQFGKIVVK 155
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 26 SGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEV 59
SGS APG Y +IC PGH AG + + V
Sbjct: 105 SGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138
>pdb|1A8Z|A Chain A, Structure Determination Of A 16.8kda Copper Protein
Rusticyanin At 2.1a Resolution Using Anomalous
Scattering Data With Direct Methods
Length = 153
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH G +I V+
Sbjct: 130 GTYYYVCQIPGHAATGMFGKIVVK 153
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH G +I V+
Sbjct: 132 GTYYYVCQIPGHAATGMFGKIVVK 155
>pdb|1RCY|A Chain A, Rusticyanin (Rc) From Thiobacillus Ferrooxidans
Length = 151
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH G +I V+
Sbjct: 128 GTYYYVCQIPGHAATGMFGKIVVK 151
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH G +I V+
Sbjct: 132 GTYYYVCQIPGHAATGMFGKIVVK 155
>pdb|1A3Z|A Chain A, Reduced Rusticyanin At 1.9 Angstroms
Length = 155
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH G +I V+
Sbjct: 132 GTYYYVCQIPGHAATGMFGKIVVK 155
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH G +I V+
Sbjct: 131 GTYYYVCQIPGHAATGMFGKIIVK 154
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPGH G +I V+
Sbjct: 132 GTYYYVCQIPGHAATGLFGKIVVK 155
>pdb|2CAL|A Chain A, Crystal Structure Of His143met Rusticyanin
Length = 154
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 37 GIYYFICGIPGHCQAGQRLRIEVE 60
G YY++C IPG G +I V+
Sbjct: 131 GTYYYVCQIPGMAATGMFGKIVVK 154
>pdb|2AAN|A Chain A, Auracyanin A: A "blue" Copper Protein From The Green
Thermophilic Photosynthetic Bacterium,Chloroflexus
Aurantiacus
Length = 139
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 31 ITLNAP--GIYYFICGIPGH 48
+T AP G Y +IC +PGH
Sbjct: 109 VTFTAPAAGTYLYICTVPGH 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,541,946
Number of Sequences: 62578
Number of extensions: 62401
Number of successful extensions: 237
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 20
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)