Query 045115
Match_columns 131
No_of_seqs 146 out of 749
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 99.9 1.1E-26 3.9E-31 173.6 7.0 66 1-66 46-113 (138)
2 1x9u_A Umecyanin; cupredoxin, 99.9 1.7E-25 5.7E-30 162.8 7.0 64 1-64 44-108 (116)
3 1ws8_A Mavicyanin; oxidized fo 99.9 3.8E-25 1.3E-29 159.2 6.4 64 1-64 44-107 (109)
4 2cbp_A Cucumber basic protein; 99.9 5.6E-24 1.9E-28 149.9 6.0 59 1-60 38-96 (96)
5 1f56_A Plantacyanin; cupredoxi 99.9 7.2E-24 2.5E-28 148.1 6.4 59 1-60 33-91 (91)
6 2cal_A Rusticyanin; iron respi 98.9 2.4E-09 8E-14 79.8 5.1 59 1-60 83-154 (154)
7 1qhq_A Protein (auracyanin); e 98.7 8.5E-09 2.9E-13 74.2 4.8 36 25-60 104-139 (140)
8 1bxv_A Plastocyanin; copper pr 98.4 1.4E-07 4.7E-12 62.3 3.6 31 28-60 61-91 (91)
9 2aan_A Auracyanin A; cupredoxi 98.1 4.3E-06 1.5E-10 60.0 5.7 30 30-60 110-139 (139)
10 1iuz_A Plastocyanin; electron 98.0 4.4E-06 1.5E-10 56.5 3.3 34 25-60 64-98 (98)
11 1iko_P Ephrin-B2; greek KEY, g 98.0 3.7E-06 1.3E-10 65.1 3.1 62 2-63 50-142 (178)
12 1plc_A Plastocyanin; electron 97.9 8.6E-06 2.9E-10 54.8 3.9 31 28-60 69-99 (99)
13 1kdj_A Plastocyanin; electron 97.8 2.3E-05 7.8E-10 52.8 5.2 31 28-60 72-102 (102)
14 1byp_A Protein (plastocyanin); 97.8 1.8E-05 6E-10 53.1 3.8 31 28-60 69-99 (99)
15 2gim_A Plastocyanin; beta shee 97.7 3.2E-05 1.1E-09 52.3 4.5 31 28-60 72-105 (106)
16 1b3i_A PETE protein, protein ( 97.7 4E-05 1.4E-09 51.2 4.7 31 28-60 67-97 (97)
17 1pmy_A Pseudoazurin; electron 97.5 8.6E-05 2.9E-09 53.2 4.7 31 29-61 64-94 (123)
18 2vsm_B Ephrin-B2; developmenta 97.5 7.1E-05 2.4E-09 55.8 4.0 59 2-60 49-138 (140)
19 1paz_A Pseudoazurin precursor; 97.5 8.7E-05 3E-09 53.2 4.0 31 29-61 64-94 (123)
20 1pcs_A Plastocyanin; electron 97.5 8.5E-05 2.9E-09 49.6 3.6 30 29-60 69-98 (98)
21 3d12_B Ephrin-B3; beta propell 97.4 0.00015 5E-09 54.2 4.9 59 2-60 51-140 (141)
22 3tu6_A Pseudoazurin (blue copp 97.4 0.00016 5.6E-09 52.3 4.7 33 28-62 65-97 (127)
23 2plt_A Plastocyanin; electron 97.4 0.00012 4E-09 48.8 3.3 30 29-60 69-98 (98)
24 3erx_A Pseudoazurin; copper pr 97.4 0.00013 4.5E-09 52.5 3.8 32 28-61 63-94 (123)
25 1shx_A Ephrin-A5; ephrin signa 97.3 0.00037 1.3E-08 51.9 5.8 59 2-63 50-135 (138)
26 4hci_A Cupredoxin 1; structura 97.3 0.00017 5.8E-09 48.8 3.6 29 30-60 72-100 (100)
27 2x11_B Ephrin-A5; receptor-sig 97.2 0.00053 1.8E-08 53.0 5.9 60 2-64 79-165 (177)
28 3czu_B Ephrin-A1; ATP-binding, 97.2 0.00047 1.6E-08 53.5 5.3 60 2-64 78-163 (182)
29 3ef4_A Pseudoazurin, blue copp 97.1 0.00042 1.4E-08 50.1 4.2 31 29-61 65-95 (124)
30 3ay2_A Lipid modified azurin p 97.0 0.0005 1.7E-08 52.2 4.0 25 35-60 142-166 (167)
31 3cvb_A Plastocyanin; cupredoxi 96.7 0.0015 5E-08 43.6 4.0 29 30-60 73-104 (105)
32 1cuo_A Protein (azurin ISO-2); 96.7 0.0018 6E-08 46.9 4.4 30 30-60 96-128 (129)
33 2wo3_B Ephrin-A2; transferase- 96.4 0.0075 2.5E-07 45.7 6.2 58 3-63 61-145 (157)
34 3hei_B Ephrin-A1; EPH receptor 96.3 0.0067 2.3E-07 44.8 5.4 58 3-60 51-131 (132)
35 1id2_A Amicyanin; beta barrel, 95.8 0.0085 2.9E-07 41.0 3.9 28 29-60 79-106 (106)
36 2ccw_A Azurin II, AZN-2; elect 95.6 0.012 4E-07 42.4 4.1 30 30-60 96-128 (129)
37 1nwp_A Azurin; electron transp 95.5 0.012 4.1E-07 42.4 3.7 25 35-60 103-128 (128)
38 2iaa_C Azurin; quinoprotein, t 95.5 0.015 5.1E-07 41.9 4.2 25 35-60 102-127 (128)
39 3c75_A Amicyanin; copper prote 95.0 0.023 8E-07 40.5 3.9 28 29-60 105-132 (132)
40 2ov0_A Amicyanin; beta-sandwic 94.7 0.032 1.1E-06 37.8 3.9 28 29-60 78-105 (105)
41 2cua_A Protein (CUA); CUA cent 94.5 0.047 1.6E-06 39.5 4.6 30 29-60 102-134 (135)
42 2ux6_A Pseudoazurin; type-1 co 94.3 0.03 1E-06 39.6 3.2 30 28-61 63-92 (122)
43 1iby_A Nitrosocyanin; RED copp 94.3 0.044 1.5E-06 37.2 3.8 29 30-60 82-111 (112)
44 3s8f_B Cytochrome C oxidase su 88.5 0.51 1.8E-05 35.5 4.3 32 29-60 135-167 (168)
45 3fsa_A Azurin; copper, cupredo 87.4 0.63 2.2E-05 33.6 4.1 22 35-60 104-125 (125)
46 2dv6_A Nitrite reductase; elec 85.5 0.62 2.1E-05 38.4 3.5 34 30-63 101-134 (447)
47 1fwx_A Nitrous oxide reductase 83.6 1.2 4.2E-05 39.5 4.8 32 29-62 559-593 (595)
48 3sbq_A Nitrous-oxide reductase 82.5 1.4 4.8E-05 39.7 4.7 30 30-61 605-637 (638)
49 1oe1_A Dissimilatory copper-co 75.3 3.8 0.00013 32.5 4.8 35 29-63 285-320 (336)
50 3gdc_A Multicopper oxidase; be 74.5 1.5 5.3E-05 34.4 2.3 32 30-61 257-288 (288)
51 3kw8_A Laccase, putative coppe 73.7 3 0.0001 32.5 3.8 36 30-65 231-269 (276)
52 1mzy_A Copper-containing nitri 71.3 3 0.0001 33.1 3.3 33 30-62 286-319 (333)
53 1sdd_A Coagulation factor V; c 67.8 0.82 2.8E-05 36.3 -0.7 33 30-62 269-301 (306)
54 3l6w_A Hemocyanin 1; cupredoxi 67.4 2.9 9.8E-05 36.6 2.6 51 8-60 439-491 (491)
55 1cyx_A CYOA; electron transpor 66.9 5.5 0.00019 31.0 3.9 29 30-60 84-115 (205)
56 3hb3_B Cytochrome C oxidase su 64.3 6.1 0.00021 32.2 3.8 31 30-62 232-265 (298)
57 2gsm_B Cytochrome C oxidase su 62.9 6.8 0.00023 31.1 3.8 30 30-61 214-246 (262)
58 3cg8_A Laccase; oxidoreductase 61.9 6.3 0.00021 31.8 3.5 32 34-65 279-310 (343)
59 1v54_B Cytochrome C oxidase po 60.0 7.1 0.00024 30.4 3.4 30 30-61 183-215 (227)
60 1kbv_A ANIA, major outer membr 53.3 11 0.00036 30.0 3.4 33 30-62 275-308 (327)
61 3t9w_A Small laccase, multi-co 51.4 8.6 0.0003 30.3 2.6 31 34-64 260-290 (299)
62 1sdd_B Coagulation factor V; c 50.7 10 0.00034 33.0 3.1 33 30-62 296-328 (647)
63 1fft_B Ubiquinol oxidase; elec 47.6 9 0.00031 31.4 2.2 29 30-60 194-225 (315)
64 3tas_A Small laccase, multi-co 47.0 13 0.00045 29.3 3.0 32 35-66 245-276 (313)
65 2zoo_A Probable nitrite reduct 44.7 18 0.00061 29.6 3.5 34 30-63 265-299 (442)
66 2j5w_A Ceruloplasmin, ferroxid 41.8 22 0.00074 33.2 4.0 35 30-64 325-359 (1065)
67 2dv6_A Nitrite reductase; elec 40.9 27 0.00091 28.5 4.0 34 30-63 402-435 (447)
68 2bw4_A Copper-containing nitri 37.4 22 0.00076 28.0 3.0 34 30-63 292-326 (340)
69 1kbv_A ANIA, major outer membr 36.8 25 0.00086 27.8 3.2 33 30-62 122-157 (327)
70 1mzy_A Copper-containing nitri 34.6 43 0.0015 26.3 4.2 34 30-63 116-154 (333)
71 1oe1_A Dissimilatory copper-co 34.0 44 0.0015 26.2 4.2 34 30-63 117-154 (336)
72 3g5w_A Multicopper oxidase typ 31.8 44 0.0015 26.4 3.9 32 30-61 239-276 (318)
73 2zoo_A Probable nitrite reduct 29.6 28 0.00096 28.4 2.4 34 30-63 112-148 (442)
74 2zwn_A Two-domain type laccase 28.4 64 0.0022 25.5 4.3 32 30-61 240-277 (339)
75 2bw4_A Copper-containing nitri 26.1 65 0.0022 25.2 3.9 34 30-63 123-160 (340)
76 3gdc_A Multicopper oxidase; be 20.6 98 0.0034 23.8 3.9 34 30-63 120-156 (288)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=99.93 E-value=1.1e-26 Score=173.62 Aligned_cols=66 Identities=33% Similarity=0.570 Sum_probs=61.0
Q ss_pred CCceEEe-ChhhcccccCCCCccccccCCcEEEc-ccCceeEEEcCCCCcccCCCeEEEEEecCCCCC
Q 045115 1 MHDVHEV-TEADYVACNAKASIKHHISGSDAITL-NAPGIYYFICGIPGHCQAGQRLRIEVESDGSPG 66 (131)
Q Consensus 1 ~HnV~eV-~k~dY~~C~~~~pi~~~ssG~~~v~L-~~~G~~YFICgv~gHC~~GmKLaI~V~~~~s~~ 66 (131)
.|||+|| +|++|+.|+..+++..+++|+++|+| +++|.+||||++++||++||||+|+|....+++
T Consensus 46 ~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~ 113 (138)
T 1jer_A 46 AHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATV 113 (138)
T ss_dssp TCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECCSSEEEEEECCSTTTGGGTCEEEEEEECCC---
T ss_pred CceEEEeCchhhcCccCCCCccccccCCCeEEEeccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCC
Confidence 4999999 99999999999999999999999999 999999999999999999999999999876543
No 2
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=99.92 E-value=1.7e-25 Score=162.77 Aligned_cols=64 Identities=38% Similarity=0.699 Sum_probs=58.9
Q ss_pred CCceEEeChhhcccccCCCCccccccCCcEEEcccCceeEEEcCCCCcccCCCeEEE-EEecCCC
Q 045115 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRI-EVESDGS 64 (131)
Q Consensus 1 ~HnV~eV~k~dY~~C~~~~pi~~~ssG~~~v~L~~~G~~YFICgv~gHC~~GmKLaI-~V~~~~s 64 (131)
.|+|+||+|++|+.|+..+++..+++|+++|+|+++|.+||||++++||++||||+| +|.+..+
T Consensus 44 ~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 44 MHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp TCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEEEEEECCSTTTTTTTCEEEEEEECC---
T ss_pred CCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCCEEEECCCCCccccCCEEEEEEECCCCC
Confidence 499999999999999999999999999999999999999999999999999999999 8876554
No 3
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=99.91 E-value=3.8e-25 Score=159.24 Aligned_cols=64 Identities=42% Similarity=0.945 Sum_probs=59.3
Q ss_pred CCceEEeChhhcccccCCCCccccccCCcEEEcccCceeEEEcCCCCcccCCCeEEEEEecCCC
Q 045115 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEVESDGS 64 (131)
Q Consensus 1 ~HnV~eV~k~dY~~C~~~~pi~~~ssG~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~~~s 64 (131)
.|||+||+|++|+.|+..+++..+++|+++|+|+++|++||||++++||++||||+|+|.+..+
T Consensus 44 ~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 44 FHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp TCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSEEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred CceEEEEChHHCCcccCCCcccccCCCCEEEEECCCcCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 4999999999999999999999999999999999999999999999999999999999986543
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=99.89 E-value=5.6e-24 Score=149.86 Aligned_cols=59 Identities=41% Similarity=0.798 Sum_probs=57.0
Q ss_pred CCceEEeChhhcccccCCCCccccccCCcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 1 ~HnV~eV~k~dY~~C~~~~pi~~~ssG~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
.|||+||++++|+.|+..+++..+++|+++|+| ++|++||||++++||++||||+|+|+
T Consensus 38 ~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 38 MHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp TCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCEEEEcCCCCccccCCEEEEEEC
Confidence 499999999999999999999999999999999 89999999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=99.89 E-value=7.2e-24 Score=148.14 Aligned_cols=59 Identities=37% Similarity=0.765 Sum_probs=56.5
Q ss_pred CCceEEeChhhcccccCCCCccccccCCcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 1 MHDVHEVTEADYVACNAKASIKHHISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 1 ~HnV~eV~k~dY~~C~~~~pi~~~ssG~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
.|||+||++++|+.|+..+++..+++|+++|+|+ +|++||||++++||++||||+|+|.
T Consensus 33 ~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 33 QHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp TBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCeEEEcCCCCccccCCEEEEEEC
Confidence 4999999999999999999999999999999996 8999999999999999999999984
No 6
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=98.85 E-value=2.4e-09 Score=79.82 Aligned_cols=59 Identities=24% Similarity=0.395 Sum_probs=45.1
Q ss_pred CCceEEe-ChhhcccccCCCCcccc-------ccC---Cc--EEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 1 MHDVHEV-TEADYVACNAKASIKHH-------ISG---SD--AITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 1 ~HnV~eV-~k~dY~~C~~~~pi~~~-------ssG---~~--~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
.|+++.+ ...+|+.|.....+..+ ..| .. +|++ ++|.|||+|++++||+.|||..|+|.
T Consensus 83 ~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 83 GHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp CCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred eeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 3999998 46688888765543221 222 33 5688 99999999999999999999999984
No 7
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.74 E-value=8.5e-09 Score=74.20 Aligned_cols=36 Identities=42% Similarity=0.732 Sum_probs=32.2
Q ss_pred ccCCcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 25 ISGSDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 25 ssG~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
.++..+|+++++|.|||+|++++||+.|||..|+|.
T Consensus 104 ~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 104 ESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp EEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred ceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 445567888899999999999999999999999996
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.43 E-value=1.4e-07 Score=62.28 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=28.2
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
...++++++|.|+|+|. .||..|||..|+|.
T Consensus 61 ~~~~~f~~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 61 TFEATFSEPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEEEECCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEeCCCEEEEEEeC--CCccCCCEEEEEEC
Confidence 45788999999999999 89999999999984
No 9
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.11 E-value=4.3e-06 Score=59.97 Aligned_cols=30 Identities=33% Similarity=0.669 Sum_probs=26.2
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
+|+++++|.|+|+|.+.+||+ ||+-.|+|.
T Consensus 110 ~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 110 TFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp EEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred EEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 345558999999999999999 999999984
No 10
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=97.97 E-value=4.4e-06 Score=56.46 Aligned_cols=34 Identities=32% Similarity=0.607 Sum_probs=28.8
Q ss_pred ccCC-cEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 25 ISGS-DAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 25 ssG~-~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
..|. ..++++++|.|+|.|.. ||+.||+..|.|.
T Consensus 64 ~~g~~~~~tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 64 SKGETVVRKLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp STTCEEEEECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred CCCCEEEEEcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 3444 36889999999999996 9999999999984
No 11
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.96 E-value=3.7e-06 Score=65.07 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=43.1
Q ss_pred CceEEeChhhcccccCCC-Ccccc--cc--CCcEEEcc-------------cCc-eeEEEcCCC-----------CcccC
Q 045115 2 HDVHEVTEADYVACNAKA-SIKHH--IS--GSDAITLN-------------APG-IYYFICGIP-----------GHCQA 51 (131)
Q Consensus 2 HnV~eV~k~dY~~C~~~~-pi~~~--ss--G~~~v~L~-------------~~G-~~YFICgv~-----------gHC~~ 51 (131)
+.|++|++++|+.|+... ....+ .. +...|++. ++| .|||||+-. |+|..
T Consensus 50 ~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~YY~IstS~G~~~gl~~~~gG~C~t 129 (178)
T 1iko_P 50 YKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQT 129 (178)
T ss_dssp EEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEEEEEECCCCBSGGGTTCCBSHHHHH
T ss_pred EEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCceEEEecCCcccccccccCCCcccc
Confidence 578999999999999863 22222 22 33344442 367 799999854 79996
Q ss_pred -CCeEEEEEecCC
Q 045115 52 -GQRLRIEVESDG 63 (131)
Q Consensus 52 -GmKLaI~V~~~~ 63 (131)
+|||.|.|....
T Consensus 130 ~~Mkl~ikV~~~~ 142 (178)
T 1iko_P 130 RAMKILMKVGQDA 142 (178)
T ss_dssp SCCEEEEEETCC-
T ss_pred ceeEEEEEeecCC
Confidence 899999997543
No 12
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=97.91 E-value=8.6e-06 Score=54.77 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=27.9
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
...++++++|.|+|.|. .||+.||+..|+|.
T Consensus 69 ~~~~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 69 TFEVALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EEEEECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 34789999999999999 89999999999984
No 13
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=97.85 E-value=2.3e-05 Score=52.80 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=28.0
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
...++++++|.|+|+|. .||+.||+..|+|.
T Consensus 72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 35788899999999999 99999999999984
No 14
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=97.79 E-value=1.8e-05 Score=53.09 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=27.8
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
...++++++|.|+|.|. .||+.||+..|+|.
T Consensus 69 ~~~~~f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 69 EYSVTLTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEEEEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 34688999999999999 89999999999984
No 15
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=97.73 E-value=3.2e-05 Score=52.25 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=27.7
Q ss_pred CcEEEc---ccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 28 SDAITL---NAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 28 ~~~v~L---~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
...|++ +++|.|+|.|. .||+.||+..|+|.
T Consensus 72 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 72 STSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 346788 88999999999 89999999999996
No 16
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=97.72 E-value=4e-05 Score=51.16 Aligned_cols=31 Identities=42% Similarity=0.600 Sum_probs=28.1
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
...++++++|.|+|.|. .||+.||+..|+|.
T Consensus 67 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 67 FYSVTLGTPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CEEEECCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred EEEEEeCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 45788999999999999 89999999999984
No 17
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=97.55 E-value=8.6e-05 Score=53.22 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=28.4
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEec
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVES 61 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~ 61 (131)
..++++++|.|+|+|. .||..||+..|+|..
T Consensus 64 ~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 64 AVVKFDKEGVYGFKCA--PHYMMGMVALVVVGD 94 (123)
T ss_dssp EEEECCSCEEEEEECS--TTTTTTCEEEEEESS
T ss_pred EEEEeCCCeEEEEEeC--CccccCCEEEEEEcC
Confidence 4799999999999998 599999999999984
No 18
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=97.52 E-value=7.1e-05 Score=55.82 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=40.0
Q ss_pred CceEEeChhhcccccCCC-Ccccc----ccCCcEEEcc-------------cCc-eeEEEcCC-----------CCcccC
Q 045115 2 HDVHEVTEADYVACNAKA-SIKHH----ISGSDAITLN-------------APG-IYYFICGI-----------PGHCQA 51 (131)
Q Consensus 2 HnV~eV~k~dY~~C~~~~-pi~~~----ssG~~~v~L~-------------~~G-~~YFICgv-----------~gHC~~ 51 (131)
..+++|++++|+.|+... +...+ -.+...+++. ++| .||||++- +|-|..
T Consensus 49 ~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~YY~Ists~g~~~gl~~~~gG~C~t 128 (140)
T 2vsm_B 49 YKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQT 128 (140)
T ss_dssp EEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEEEEEECCCCBSGGGTTCCBSHHHHH
T ss_pred EEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCceEEEecCCCCccccccccCCcccc
Confidence 457889999999999863 32222 1233344332 467 58899873 358985
Q ss_pred -CCeEEEEEe
Q 045115 52 -GQRLRIEVE 60 (131)
Q Consensus 52 -GmKLaI~V~ 60 (131)
.|||.|.|.
T Consensus 129 ~~mkl~i~V~ 138 (140)
T 2vsm_B 129 RAMKILMKVG 138 (140)
T ss_dssp SCCEEEEEET
T ss_pred ceEEEEEEec
Confidence 899999996
No 19
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=97.49 E-value=8.7e-05 Score=53.19 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.4
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEec
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVES 61 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~ 61 (131)
..++++++|.|+|.|. .||..||+..|+|..
T Consensus 64 ~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 64 YVLTVTQPGAYLVKCT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp EEEECCSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEeCCCEEEEEEeC--CcccCCCEEEEEEcC
Confidence 4789999999999998 599999999999984
No 20
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=97.47 E-value=8.5e-05 Score=49.58 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=27.3
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
..++++++|.|+|.|. .||..||+..|+|.
T Consensus 69 ~~~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 69 FTSTFTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEcCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 4688899999999999 79999999999984
No 21
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=97.44 E-value=0.00015 Score=54.23 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=39.6
Q ss_pred CceEEeChhhcccccCC-CCccccc----cCCcEEEcc-------------cCc-eeEEEcCC-----------CCcccC
Q 045115 2 HDVHEVTEADYVACNAK-ASIKHHI----SGSDAITLN-------------APG-IYYFICGI-----------PGHCQA 51 (131)
Q Consensus 2 HnV~eV~k~dY~~C~~~-~pi~~~s----sG~~~v~L~-------------~~G-~~YFICgv-----------~gHC~~ 51 (131)
..+++|++++|++|+.. ++...+. .+..+|++. ++| .||||++- +|-|..
T Consensus 51 ~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~pG~~YY~ISts~G~~~gl~~~~gG~C~t 130 (141)
T 3d12_B 51 YKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLT 130 (141)
T ss_dssp CEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCCTTCEEEEEECSCSSTTTTTCCBCSHHHH
T ss_pred EEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeeeCCCeEEEEecCCCCcccccccCCCcccc
Confidence 45789999999999986 3333331 122222221 356 68999873 467995
Q ss_pred -CCeEEEEEe
Q 045115 52 -GQRLRIEVE 60 (131)
Q Consensus 52 -GmKLaI~V~ 60 (131)
.|||.|.|.
T Consensus 131 ~~Mkl~i~V~ 140 (141)
T 3d12_B 131 RGMKVLLRVG 140 (141)
T ss_dssp TCCEEEEECC
T ss_pred ceEEEEEEec
Confidence 899999985
No 22
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=97.41 E-value=0.00016 Score=52.31 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=29.8
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEecC
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVESD 62 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~~ 62 (131)
...++++++|.|+|.|. .||..||+-.|+|...
T Consensus 65 t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~~ 97 (127)
T 3tu6_A 65 EITVTLSKPGVYMYQCA--PHVGMGMIGAIVVGEP 97 (127)
T ss_dssp CCEEECCSCEEEEEECT--TTGGGTCEEEEEESSC
T ss_pred EEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECcC
Confidence 35799999999999999 6999999999999854
No 23
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=97.38 E-value=0.00012 Score=48.78 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=27.3
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
..++++++|.|+|.|. .||+.||+..|+|.
T Consensus 69 ~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 69 YSVKLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEEECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EEEEeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 4688999999999999 79999999999984
No 24
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=97.37 E-value=0.00013 Score=52.46 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.3
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEec
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVES 61 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~ 61 (131)
...++++++|.|+|.|. .||..||+-.|+|..
T Consensus 63 t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 63 SYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp CEEEEECSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred EEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 45789999999999999 799999999999985
No 25
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=97.32 E-value=0.00037 Score=51.88 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=38.2
Q ss_pred CceEEeChhhcccccCCCCc-ccc-cc------CCcEEEcc-------------cCc-eeEEEcCC-----CCcccCCCe
Q 045115 2 HDVHEVTEADYVACNAKASI-KHH-IS------GSDAITLN-------------APG-IYYFICGI-----PGHCQAGQR 54 (131)
Q Consensus 2 HnV~eV~k~dY~~C~~~~pi-~~~-ss------G~~~v~L~-------------~~G-~~YFICgv-----~gHC~~GmK 54 (131)
..+++|++++|++|+..... ..+ -+ +..+|++. ++| .||||++- ++-| ||
T Consensus 50 ~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~EF~pG~~YY~ISts~~~~~g~~C---lr 126 (138)
T 1shx_A 50 YVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSC---LK 126 (138)
T ss_dssp EEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCCCCTTEEEEEEEEESSCCSCSCC---CE
T ss_pred EEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCceeecCCCeEEEEEcCCCCCCCCce---eE
Confidence 35789999999999975432 223 11 33344331 267 58899762 3446 99
Q ss_pred EEEEEecCC
Q 045115 55 LRIEVESDG 63 (131)
Q Consensus 55 LaI~V~~~~ 63 (131)
|.|.|....
T Consensus 127 L~V~V~p~~ 135 (138)
T 1shx_A 127 LKVFVRPTN 135 (138)
T ss_dssp EEEEECCTT
T ss_pred EEEEEEccc
Confidence 999998553
No 26
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.32 E-value=0.00017 Score=48.80 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=25.6
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
.|+.+++|.|.|.|. .||..||+-.|.|+
T Consensus 72 ~~t~~~~G~Y~y~C~--~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 72 TVKPKSAGTYELICR--YHLLKGMEGKVIVK 100 (100)
T ss_dssp EECCCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEecccCceEEEECc--cccCCCCEEEEEEC
Confidence 466789999999997 69999999999985
No 27
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.23 E-value=0.00053 Score=53.04 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=38.9
Q ss_pred CceEEeChhhcccccCCCCc-ccc--c-----cCCcEEEc-------------ccCc-eeEEEcCC-----CCcccCCCe
Q 045115 2 HDVHEVTEADYVACNAKASI-KHH--I-----SGSDAITL-------------NAPG-IYYFICGI-----PGHCQAGQR 54 (131)
Q Consensus 2 HnV~eV~k~dY~~C~~~~pi-~~~--s-----sG~~~v~L-------------~~~G-~~YFICgv-----~gHC~~GmK 54 (131)
..+++|++++|++|+.++.. ..+ + .|..+|++ =++| .||||++- ++-| ||
T Consensus 79 y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~EF~pG~~YYyISTS~~~~~g~~C---lr 155 (177)
T 2x11_B 79 YVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSC---LK 155 (177)
T ss_dssp EEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCCCCTTEEEEEEEEESSCCCSSSC---CE
T ss_pred EEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCccccCCCeEEEEecCCCCCCCCcc---eE
Confidence 35789999999999975533 223 1 13334333 1367 58899762 2346 99
Q ss_pred EEEEEecCCC
Q 045115 55 LRIEVESDGS 64 (131)
Q Consensus 55 LaI~V~~~~s 64 (131)
|.|.|.....
T Consensus 156 LkV~V~p~~~ 165 (177)
T 2x11_B 156 LKVFVRPTNS 165 (177)
T ss_dssp EEEEECCTTT
T ss_pred EEEEEEcCCC
Confidence 9999996653
No 28
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.19 E-value=0.00047 Score=53.51 Aligned_cols=60 Identities=20% Similarity=0.424 Sum_probs=37.6
Q ss_pred CceEEeChhhcccccCCC-Ccccc------c-cCCcEEEcc-------------cCc-eeEEEcC----CCCcccCCCeE
Q 045115 2 HDVHEVTEADYVACNAKA-SIKHH------I-SGSDAITLN-------------APG-IYYFICG----IPGHCQAGQRL 55 (131)
Q Consensus 2 HnV~eV~k~dY~~C~~~~-pi~~~------s-sG~~~v~L~-------------~~G-~~YFICg----v~gHC~~GmKL 55 (131)
..+++|++++|++|+... ....| . .|..+|++. ++| .||||++ .+|.| |||
T Consensus 78 y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL 154 (182)
T 3czu_B 78 YILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRL 154 (182)
T ss_dssp EEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEE
T ss_pred EEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEE
Confidence 357899999999999764 33332 1 122333321 367 6889986 34566 999
Q ss_pred EEEEecCCC
Q 045115 56 RIEVESDGS 64 (131)
Q Consensus 56 aI~V~~~~s 64 (131)
.|.|.....
T Consensus 155 ~v~V~~k~~ 163 (182)
T 3czu_B 155 KVTVSGKIT 163 (182)
T ss_dssp EEEECC---
T ss_pred EEEEecCCC
Confidence 999986553
No 29
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.13 E-value=0.00042 Score=50.13 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=28.7
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEec
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVES 61 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~ 61 (131)
..++++++|.|.|.|. .||..||+-.|+|..
T Consensus 65 ~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 65 VVFNAEKEGLYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEECCSSEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEeCCCeEEEEEcC--CCCcCCCEEEEEECC
Confidence 5799999999999998 799999999999985
No 30
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.03 E-value=0.0005 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=23.6
Q ss_pred cCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 35 APGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 35 ~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
++|.|+|+|++++|=+ |||-.|+|.
T Consensus 142 kpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 142 ADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp TTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred CCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 7899999999999999 999999996
No 31
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=96.74 E-value=0.0015 Score=43.65 Aligned_cols=29 Identities=38% Similarity=0.583 Sum_probs=26.0
Q ss_pred EEEc---ccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 30 AITL---NAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 30 ~v~L---~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
.+++ +++|.|+|.|. .|+..||+-.|.|.
T Consensus 73 ~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 73 EITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 5666 78999999999 79999999999986
No 32
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=96.70 E-value=0.0018 Score=46.86 Aligned_cols=30 Identities=23% Similarity=0.539 Sum_probs=26.0
Q ss_pred EEEcc---cCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 30 AITLN---APGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 30 ~v~L~---~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
+|++. ++|.|+|+|++++|=+ |||-.|+|.
T Consensus 96 tf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 96 KFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp EEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred EEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 45544 7899999999999999 899999986
No 33
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=96.36 E-value=0.0075 Score=45.73 Aligned_cols=58 Identities=22% Similarity=0.397 Sum_probs=36.4
Q ss_pred ceEEeChhhcccccCCCCc-ccc--c-----cCCcEEEc--c-----------cCc-eeEEEcCC-----CCcccCCCeE
Q 045115 3 DVHEVTEADYVACNAKASI-KHH--I-----SGSDAITL--N-----------APG-IYYFICGI-----PGHCQAGQRL 55 (131)
Q Consensus 3 nV~eV~k~dY~~C~~~~pi-~~~--s-----sG~~~v~L--~-----------~~G-~~YFICgv-----~gHC~~GmKL 55 (131)
.+++|++++|++|+..... ..| + .|..+|++ . ++| .||||++- ++-| |||
T Consensus 61 ~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~EF~pG~~YY~ISTS~g~~~gg~C---~rl 137 (157)
T 2wo3_B 61 VLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPC---LRL 137 (157)
T ss_dssp EEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSCCCCTTCEEEEEEECTTCSCCTTC---CEE
T ss_pred EEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCeeeeCCCeEEEEEecCCCCCCCcc---eeE
Confidence 4679999999999986522 233 1 12223322 1 366 69999974 3456 688
Q ss_pred EEEEecCC
Q 045115 56 RIEVESDG 63 (131)
Q Consensus 56 aI~V~~~~ 63 (131)
.|.|....
T Consensus 138 kV~V~~~~ 145 (157)
T 2wo3_B 138 KVYVRPTQ 145 (157)
T ss_dssp EEEECCCC
T ss_pred EEEEEcCC
Confidence 88887543
No 34
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=96.27 E-value=0.0067 Score=44.79 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=34.8
Q ss_pred ceEEeChhhcccccCCC-Ccccc------c-cCCcEEEcc-------------cCc-eeEEEcCCCCccc-CCCeEEEEE
Q 045115 3 DVHEVTEADYVACNAKA-SIKHH------I-SGSDAITLN-------------APG-IYYFICGIPGHCQ-AGQRLRIEV 59 (131)
Q Consensus 3 nV~eV~k~dY~~C~~~~-pi~~~------s-sG~~~v~L~-------------~~G-~~YFICgv~gHC~-~GmKLaI~V 59 (131)
.+.+|++++|++|+... +...| . .|..+|++. ++| .||||++-..|=. .=+||.|.|
T Consensus 51 ~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~EF~pG~~YY~ISt~~~~~~~~cl~l~v~v 130 (132)
T 3hei_B 51 ILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTV 130 (132)
T ss_dssp EEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSCCCCSCCEEEEEE
T ss_pred EEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCeeecCCCcEEEEEccCCCCCCcceEEEEEE
Confidence 46789999999999764 33333 1 233343331 367 5889987321111 117888887
Q ss_pred e
Q 045115 60 E 60 (131)
Q Consensus 60 ~ 60 (131)
.
T Consensus 131 ~ 131 (132)
T 3hei_B 131 K 131 (132)
T ss_dssp C
T ss_pred E
Confidence 4
No 35
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=95.84 E-value=0.0085 Score=40.96 Aligned_cols=28 Identities=39% Similarity=0.513 Sum_probs=24.7
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
..++++++|.|.|.|.+ |. ||+..|.|.
T Consensus 79 ~~~tf~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 79 YAITFNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 46888999999999997 87 999999984
No 36
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=95.61 E-value=0.012 Score=42.43 Aligned_cols=30 Identities=23% Similarity=0.590 Sum_probs=24.6
Q ss_pred EEEcc--cCce-eEEEcCCCCcccCCCeEEEEEe
Q 045115 30 AITLN--APGI-YYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 30 ~v~L~--~~G~-~YFICgv~gHC~~GmKLaI~V~ 60 (131)
+|+.. ++|. |+|+|++++|=+ |||-.|+|.
T Consensus 96 tf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 96 TFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred EEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 34444 5665 999999999999 999999986
No 37
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=95.48 E-value=0.012 Score=42.42 Aligned_cols=25 Identities=32% Similarity=0.669 Sum_probs=22.2
Q ss_pred cCce-eEEEcCCCCcccCCCeEEEEEe
Q 045115 35 APGI-YYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 35 ~~G~-~YFICgv~gHC~~GmKLaI~V~ 60 (131)
++|. |.|+|++++|=+ |||-.|+|.
T Consensus 103 ~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 103 AAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp CTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred CCCceEEEEECCCChhH-CCEEEEEEC
Confidence 5676 999999999999 999999884
No 38
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=95.48 E-value=0.015 Score=41.91 Aligned_cols=25 Identities=36% Similarity=0.653 Sum_probs=22.7
Q ss_pred cCc-eeEEEcCCCCcccCCCeEEEEEe
Q 045115 35 APG-IYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 35 ~~G-~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
++| .|.|+|++++|=+ |||-.|+|.
T Consensus 102 ~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 102 KEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred CCCceEEEEECCCChhH-CCEEEEEEe
Confidence 678 4999999999999 999999986
No 39
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=94.97 E-value=0.023 Score=40.47 Aligned_cols=28 Identities=39% Similarity=0.513 Sum_probs=24.5
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
..++++++|.|+|.|.. |. ||+..|.|.
T Consensus 105 ~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 105 YAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 46888999999999997 76 999999984
No 40
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=94.71 E-value=0.032 Score=37.78 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.0
Q ss_pred cEEEcccCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 29 DAITLNAPGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
..++++++|.|+|.|.. |- ||+-.|.|.
T Consensus 78 ~~~tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 78 YSLTFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 46788999999999997 54 999999884
No 41
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=94.53 E-value=0.047 Score=39.47 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=25.0
Q ss_pred cEEEcccCceeEEEcCCCCccc---CCCeEEEEEe
Q 045115 29 DAITLNAPGIYYFICGIPGHCQ---AGQRLRIEVE 60 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC~---~GmKLaI~V~ 60 (131)
..++++++|.|+|.|.. +|- .+|+..|+|.
T Consensus 102 ~~~~~~~~G~y~~~C~e--~CG~~H~~M~g~v~V~ 134 (135)
T 2cua_A 102 VRYTFKRPGEYRIICNQ--YCGLGHQNMFGTIVVK 134 (135)
T ss_dssp EEEECCSCEEEEEECCS--CCSTTSTTCEEEEEEE
T ss_pred EEEEcCCCEEEEEECcc--cCCCCcCCCEEEEEEE
Confidence 36888999999999986 444 6899999986
No 42
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=94.32 E-value=0.03 Score=39.64 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.5
Q ss_pred CcEEEcccCceeEEEcCCCCcccCCCeEEEEEec
Q 045115 28 SDAITLNAPGIYYFICGIPGHCQAGQRLRIEVES 61 (131)
Q Consensus 28 ~~~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~ 61 (131)
...++++++|.|+|.|.. |+. |+-.|+|..
T Consensus 63 t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 63 NYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp CEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 357889999999999997 888 999999985
No 43
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=94.27 E-value=0.044 Score=37.17 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=23.1
Q ss_pred EEEcccCceeEEEcCCCCcccC-CCeEEEEEe
Q 045115 30 AITLNAPGIYYFICGIPGHCQA-GQRLRIEVE 60 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~-GmKLaI~V~ 60 (131)
.|+.+++|.|+|.|.. ||.. +|+..|.|.
T Consensus 82 ~f~~~~~G~y~~~C~~--~~~~~~M~g~i~V~ 111 (112)
T 1iby_A 82 SFTADKAGAFTIWCQL--HPKNIHLPGTLNVV 111 (112)
T ss_dssp EEECCSCEEEEEBCSS--SCTTTBCCEEEEEE
T ss_pred EEECCCCEEEEEECCC--CCchHHCEEEEEEe
Confidence 3444899999999997 6753 499999986
No 44
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=88.46 E-value=0.51 Score=35.52 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=25.0
Q ss_pred cEEEcccCceeEEEcCC-CCcccCCCeEEEEEe
Q 045115 29 DAITLNAPGIYYFICGI-PGHCQAGQRLRIEVE 60 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv-~gHC~~GmKLaI~V~ 60 (131)
..++.+++|.|||.|.. -|+--.+|+..|+|.
T Consensus 135 ~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~V~V~ 167 (168)
T 3s8f_B 135 VRYTFKRPGEYRIICNQYCGLGHQNMFGTIVVK 167 (168)
T ss_dssp EEEECCSCEEEEEECCSCCSTTGGGCEEEEEEE
T ss_pred EEEEeCCCEEEEEECCcCCCCCcCCCEEEEEEe
Confidence 35788999999999994 233335699999986
No 45
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=87.39 E-value=0.63 Score=33.65 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=18.0
Q ss_pred cCceeEEEcCCCCcccCCCeEEEEEe
Q 045115 35 APGIYYFICGIPGHCQAGQRLRIEVE 60 (131)
Q Consensus 35 ~~G~~YFICgv~gHC~~GmKLaI~V~ 60 (131)
++|.|-|+|+ +|= |||-.|+|.
T Consensus 104 ~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 104 EGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp --CCEEEECS--SST--TCEEEEEEC
T ss_pred CCccEEEEcC--CCC--CcEEEEEEC
Confidence 5699999999 786 999999884
No 46
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=85.48 E-value=0.62 Score=38.38 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=29.8
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~~~ 63 (131)
+|+++++|++||.|.+.+|=..||+..|.|....
T Consensus 101 ~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~V~~~~ 134 (447)
T 2dv6_A 101 SFVASKVGEFNYYCSIAGHRQAGMEGNIQVLPGN 134 (447)
T ss_dssp EEECCSCEEEEEECCSTTHHHHTCEEEEEEESSC
T ss_pred EEEcCCCEEEEEEeCCCChhhCCCEEEEEEeCCc
Confidence 5677889999999999999888999999998654
No 47
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=83.59 E-value=1.2 Score=39.55 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=25.9
Q ss_pred cEEEcccCceeEEEcCC---CCcccCCCeEEEEEecC
Q 045115 29 DAITLNAPGIYYFICGI---PGHCQAGQRLRIEVESD 62 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv---~gHC~~GmKLaI~V~~~ 62 (131)
..|+++++|.|||.|.. ..| .||+..|.|...
T Consensus 559 ~~Fta~~pGtY~yhC~e~Cg~~H--~gM~G~IiV~p~ 593 (595)
T 1fwx_A 559 VTFVAANPGVYWYYCQWFCHALH--MEMRGRMLVEPK 593 (595)
T ss_dssp EEEECCSCEEEEEECCSCCSTTC--TTCEEEEEEECC
T ss_pred EEEECCCCEEEEEECCCCCCCCc--cCCEEEEEEEcC
Confidence 36788999999999983 355 499999999854
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=82.45 E-value=1.4 Score=39.72 Aligned_cols=30 Identities=27% Similarity=0.572 Sum_probs=25.2
Q ss_pred EEEcccCceeEEEcCCCCcccCC---CeEEEEEec
Q 045115 30 AITLNAPGIYYFICGIPGHCQAG---QRLRIEVES 61 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~G---mKLaI~V~~ 61 (131)
.|+.+++|.|||.|.. .|-.+ |+..|.|..
T Consensus 605 tFtadkPGvY~y~CSE--~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 605 TFVADKPGLHWYYCSW--FCHALHMEMVGRMMVEP 637 (638)
T ss_dssp EEECCSCEEEEEECCS--CCSTTCTTCEEEEEEEC
T ss_pred EEEcCCCEEEEEECCC--cCCCCcccceEEEEEec
Confidence 5788999999999997 56654 999999974
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=75.31 E-value=3.8 Score=32.46 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.0
Q ss_pred cEEEcccCceeEEEcCCCCcc-cCCCeEEEEEecCC
Q 045115 29 DAITLNAPGIYYFICGIPGHC-QAGQRLRIEVESDG 63 (131)
Q Consensus 29 ~~v~L~~~G~~YFICgv~gHC-~~GmKLaI~V~~~~ 63 (131)
..|+.+.+|.|+|.|....|+ +.||.-.|+|....
T Consensus 285 vlv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 285 ALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 357778899999999998898 89999999998654
No 50
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=74.48 E-value=1.5 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=28.4
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEec
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVES 61 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~ 61 (131)
.++.+.+|.+.|.|-+..|=+.||.-.|+|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 46667899999999999999999999999874
No 51
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=73.66 E-value=3 Score=32.46 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=30.1
Q ss_pred EEEcc---cCceeEEEcCCCCcccCCCeEEEEEecCCCC
Q 045115 30 AITLN---APGIYYFICGIPGHCQAGQRLRIEVESDGSP 65 (131)
Q Consensus 30 ~v~L~---~~G~~YFICgv~gHC~~GmKLaI~V~~~~s~ 65 (131)
.+..+ .+|.++|-|-+..|=+.||...+.|.....+
T Consensus 231 ~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~~ 269 (276)
T 3kw8_A 231 QIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 269 (276)
T ss_dssp EEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred EEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCCC
Confidence 34454 4899999999999999999999999977543
No 52
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=71.28 E-value=3 Score=33.12 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=29.3
Q ss_pred EEEcccCceeEEEcCCCCcc-cCCCeEEEEEecC
Q 045115 30 AITLNAPGIYYFICGIPGHC-QAGQRLRIEVESD 62 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC-~~GmKLaI~V~~~ 62 (131)
.|+.+.+|.++|.|-...|+ +.||.-.|+|...
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 57778899999999999999 9999999999864
No 53
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=67.79 E-value=0.82 Score=36.27 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEecC
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVESD 62 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~~ 62 (131)
.|+.+.+|.++|.|-+..|-..||+..|+|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 566778999999999999999999999988743
No 54
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=67.43 E-value=2.9 Score=36.62 Aligned_cols=51 Identities=14% Similarity=0.364 Sum_probs=34.1
Q ss_pred ChhhcccccCCCCc-cccccCCcEEEcccCceeEEEcCCCCcccCCC-eEEEEEe
Q 045115 8 TEADYVACNAKASI-KHHISGSDAITLNAPGIYYFICGIPGHCQAGQ-RLRIEVE 60 (131)
Q Consensus 8 ~k~dY~~C~~~~pi-~~~ssG~~~v~L~~~G~~YFICgv~gHC~~Gm-KLaI~V~ 60 (131)
+-+...+|+..--. ..|.=| ....| ++|.|||..+...-|++|. |+.|.|.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (491)
T 3l6w_A 439 SYTAMFKCKVPPFSFHAFELG-KMYSV-ESGDYFMTASTTELCNDNNLRIHVHVD 491 (491)
T ss_pred hhhhhhccccCCCccCccccc-ceEec-CCCceEecCChHHHHhCCceeEEEEeC
Confidence 44556677764321 111111 24445 5899999999999999997 9999884
No 55
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=66.89 E-value=5.5 Score=30.97 Aligned_cols=29 Identities=28% Similarity=0.561 Sum_probs=24.2
Q ss_pred EEEcccCceeEEEcCCCCcccCC---CeEEEEEe
Q 045115 30 AITLNAPGIYYFICGIPGHCQAG---QRLRIEVE 60 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~G---mKLaI~V~ 60 (131)
.++.+++|.||..|.. -|-.| |++.|.|.
T Consensus 84 ~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 84 HLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 4677999999999984 67764 99999988
No 56
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=64.30 E-value=6.1 Score=32.18 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=25.3
Q ss_pred EEEcccCceeEEEcCCCCcccCC---CeEEEEEecC
Q 045115 30 AITLNAPGIYYFICGIPGHCQAG---QRLRIEVESD 62 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~G---mKLaI~V~~~ 62 (131)
.++.+++|.||..|.. -|..| |++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 4778999999999984 67754 9999999854
No 57
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=62.87 E-value=6.8 Score=31.09 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.0
Q ss_pred EEEcccCceeEEEcCCCCcccCC---CeEEEEEec
Q 045115 30 AITLNAPGIYYFICGIPGHCQAG---QRLRIEVES 61 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~G---mKLaI~V~~ 61 (131)
.++.+++|.||..|. .-|..| |++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cs--e~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCS--ELCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCC--SCCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEECh--HhcccCcccCeEEEEEEc
Confidence 577899999999998 478765 999998874
No 58
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=61.87 E-value=6.3 Score=31.83 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=28.4
Q ss_pred ccCceeEEEcCCCCcccCCCeEEEEEecCCCC
Q 045115 34 NAPGIYYFICGIPGHCQAGQRLRIEVESDGSP 65 (131)
Q Consensus 34 ~~~G~~YFICgv~gHC~~GmKLaI~V~~~~s~ 65 (131)
+.+|.++|-|-+..|=+.||...+.|......
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCCC
Confidence 57899999999999999999999999976654
No 59
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=60.03 E-value=7.1 Score=30.35 Aligned_cols=30 Identities=23% Similarity=0.589 Sum_probs=24.7
Q ss_pred EEEcccCceeEEEcCCCCcccCC---CeEEEEEec
Q 045115 30 AITLNAPGIYYFICGIPGHCQAG---QRLRIEVES 61 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~G---mKLaI~V~~ 61 (131)
.++.+++|.||..|. .-|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cs--e~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCS--EICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCC--SCCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEeh--hhcccccccCeEEEEEEc
Confidence 467789999999998 478876 999988874
No 60
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=53.33 E-value=11 Score=30.03 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=27.6
Q ss_pred EEEcccCceeEEEcCCCCcc-cCCCeEEEEEecC
Q 045115 30 AITLNAPGIYYFICGIPGHC-QAGQRLRIEVESD 62 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC-~~GmKLaI~V~~~ 62 (131)
.|+.+.+|.++|.|....|| ..||.-.|.|...
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~ 308 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGA 308 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCC
Confidence 46667899999999999998 7899888888754
No 61
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=51.37 E-value=8.6 Score=30.34 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=27.6
Q ss_pred ccCceeEEEcCCCCcccCCCeEEEEEecCCC
Q 045115 34 NAPGIYYFICGIPGHCQAGQRLRIEVESDGS 64 (131)
Q Consensus 34 ~~~G~~YFICgv~gHC~~GmKLaI~V~~~~s 64 (131)
+.+|.+.|-|-+..|=+.||...++|.....
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCC
Confidence 3579999999999999999999999997765
No 62
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=50.74 E-value=10 Score=32.98 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=28.9
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEecC
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVESD 62 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~~ 62 (131)
.|..+.+|.++|.|-+..|-..||...+.|...
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~~ 328 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVDR 328 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEECT
T ss_pred EEEeccceEeecccCcccccccccccceeeecc
Confidence 466778899999999999999999999999743
No 63
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=47.55 E-value=9 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=24.3
Q ss_pred EEEcccCceeEEEcCCCCcccCC---CeEEEEEe
Q 045115 30 AITLNAPGIYYFICGIPGHCQAG---QRLRIEVE 60 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~G---mKLaI~V~ 60 (131)
.++.+++|.||..|. .-|-.| |++.|.|.
T Consensus 194 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv 225 (315)
T 1fft_B 194 HLIANEPGTYDGISA--SYSGPGFSGMKFKAIAT 225 (315)
T ss_dssp EEECCSCBCCEEBCC--SCCSTTTTTCCEECCBC
T ss_pred EEecCCCeEEEEecc--ccchhhHHhccceEEEe
Confidence 477899999999998 477764 99998888
No 64
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=47.03 E-value=13 Score=29.34 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=28.2
Q ss_pred cCceeEEEcCCCCcccCCCeEEEEEecCCCCC
Q 045115 35 APGIYYFICGIPGHCQAGQRLRIEVESDGSPG 66 (131)
Q Consensus 35 ~~G~~YFICgv~gHC~~GmKLaI~V~~~~s~~ 66 (131)
.+|.+.|-|-+..|=+.||.-.++|.......
T Consensus 245 nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~~ 276 (313)
T 3tas_A 245 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTI 276 (313)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTCCC
T ss_pred CCEeEEEEeCChHHHHCCCeEEEEEECCCCCC
Confidence 47999999999999999999999999876543
No 65
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=44.65 E-value=18 Score=29.61 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=28.1
Q ss_pred EEEcccCceeEEEcCCCCcc-cCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIPGHC-QAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC-~~GmKLaI~V~~~~ 63 (131)
.|+.+++|.|+|.|....|+ ..||...+.|....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCC
Confidence 57778899999999998887 77998888887554
No 66
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=41.80 E-value=22 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=30.4
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEecCCC
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVESDGS 64 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~~~s 64 (131)
.|+.+.+|.|+|.|-...|=+.||...|.|.....
T Consensus 325 lv~~~~pG~y~i~~h~~~h~~~Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 325 YMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNK 359 (1065)
T ss_dssp EEECCSCEEEEEEECSHHHHHTTCEEEEEEECSCC
T ss_pred EEEeCCCeeEEEEecCcchhhCCCEEEEEEecCCC
Confidence 57778899999999999999999999999986544
No 67
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=40.85 E-value=27 Score=28.45 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=28.6
Q ss_pred EEEcccCceeEEEcCCCCcccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIPGHCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~GmKLaI~V~~~~ 63 (131)
.|..+.+|.++|-|-...|=..||...|.|....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 4667889999999999999888999999887543
No 68
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=37.37 E-value=22 Score=28.00 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=27.8
Q ss_pred EEEcccCceeEEEcCCC-CcccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIP-GHCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~-gHC~~GmKLaI~V~~~~ 63 (131)
.|+.+.+|.++|.|-.. .|=+.||.-.|.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 47778899999999987 46688999889998654
No 69
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=36.75 E-value=25 Score=27.80 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=26.7
Q ss_pred EEEcccCceeEEEcCC---CCcccCCCeEEEEEecC
Q 045115 30 AITLNAPGIYYFICGI---PGHCQAGQRLRIEVESD 62 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv---~gHC~~GmKLaI~V~~~ 62 (131)
.|+.+.+|++||-|.. ..|=..||.-.|.|...
T Consensus 122 ~f~~~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~ 157 (327)
T 1kbv_A 122 SFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPK 157 (327)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECT
T ss_pred EEECCCCeEEEEEeCCCChhhhhhcceEEEEEEecC
Confidence 5777889999999986 34666899999999864
No 70
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=34.64 E-value=43 Score=26.30 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=28.1
Q ss_pred EEEcccCceeEEEcCCCC-----cccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIPG-----HCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~g-----HC~~GmKLaI~V~~~~ 63 (131)
.|+++++|++||-|-..+ |=..||.-.+.|....
T Consensus 116 ~f~~~~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 116 RFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRD 154 (333)
T ss_dssp EEECCSCEEEEEECCCSTTHHHHHHHTTCEEEEEEECTT
T ss_pred EEECCCCEEEEEeecCCcccchhhhhCCCEEEEEEccCc
Confidence 577788999999999864 7778999999998543
No 71
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=34.04 E-value=44 Score=26.20 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=27.6
Q ss_pred EEEcccCceeEEEcCCCC----cccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIPG----HCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~g----HC~~GmKLaI~V~~~~ 63 (131)
.|+++.+|++||-|...+ |=..||.-.|.|....
T Consensus 117 ~f~~~~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~ 154 (336)
T 1oe1_A 117 RFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRD 154 (336)
T ss_dssp EEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTT
T ss_pred EEECCCCeEEEEecCCCCchhHHHhCCCeEEEEEecCc
Confidence 577788999999999754 5568999999998654
No 72
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=31.82 E-value=44 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=25.4
Q ss_pred EEEcccCceeEEEcCCCCcccC------CCeEEEEEec
Q 045115 30 AITLNAPGIYYFICGIPGHCQA------GQRLRIEVES 61 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~~------GmKLaI~V~~ 61 (131)
.|..+.+|.+.|-|-+..|-.+ ||...|.|..
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g 276 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEE 276 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETT
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECC
Confidence 4667889999999999999985 5666666654
No 73
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=29.57 E-value=28 Score=28.39 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=27.1
Q ss_pred EEEcccCceeEEEcC---CCCcccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICG---IPGHCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICg---v~gHC~~GmKLaI~V~~~~ 63 (131)
.|+++.+|++||-|- +..|=..||.-.|.|....
T Consensus 112 ~f~~~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~ 148 (442)
T 2zoo_A 112 NFKALNPGLYIYHCATAPVGMHIANGMYGLILVEPKE 148 (442)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECTT
T ss_pred EEEcCCCeEEEEecCCCChHHHHhCccEEEEEEeCCC
Confidence 577788999999994 4567778999999998543
No 74
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=28.38 E-value=64 Score=25.52 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=25.2
Q ss_pred EEEcccCceeEEEcCCCCccc------CCCeEEEEEec
Q 045115 30 AITLNAPGIYYFICGIPGHCQ------AGQRLRIEVES 61 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~gHC~------~GmKLaI~V~~ 61 (131)
.|+.+.+|.++|-|-+..||. .||...|.|..
T Consensus 240 ~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g 277 (339)
T 2zwn_A 240 IIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDG 277 (339)
T ss_dssp EEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETT
T ss_pred EEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECC
Confidence 466788999999999999964 56777777764
No 75
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=26.13 E-value=65 Score=25.25 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=27.7
Q ss_pred EEEcccCceeEEEcCCCC----cccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIPG----HCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~g----HC~~GmKLaI~V~~~~ 63 (131)
.|+++++|++||-|...+ |=..||.-.|.|....
T Consensus 123 ~~~~~~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~ 160 (340)
T 2bw4_A 123 RFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRD 160 (340)
T ss_dssp EEECCSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTB
T ss_pred EEECCCCeEEEEEcCCCCchhhHHhCcCEEEEEEccCc
Confidence 577788999999999764 6678999999887543
No 76
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=20.57 E-value=98 Score=23.83 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.1
Q ss_pred EEEcccCceeEEEcCCC---CcccCCCeEEEEEecCC
Q 045115 30 AITLNAPGIYYFICGIP---GHCQAGQRLRIEVESDG 63 (131)
Q Consensus 30 ~v~L~~~G~~YFICgv~---gHC~~GmKLaI~V~~~~ 63 (131)
.|+++.+|++||=|-.. .|=..||.-.|.|....
T Consensus 120 ~f~~~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~ 156 (288)
T 3gdc_A 120 EFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKE 156 (288)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECSS
T ss_pred EEEcCCCccEEEEecCcchHHHHhCcCeEEEEEeCCc
Confidence 57788899999999886 46678999999998654
Done!