BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045117
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
AI+CG V + A C+ +A G+ P++ CCSG++ L + +T D++A C CLK A +
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 112 -GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
G+ + IPS CG+ + + +ST+T+C ++
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 93
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
+ CG V A C+GF P S CC+G++ + S +T D++A+C CLKA A ++
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPS-CCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
G+ +P CG+ + + +ST+TNC +I+
Sbjct: 60 GINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
AI+CG V + + C+ + TG P P+ CC G+++L + T D++A C CLK+ A S+
Sbjct: 1 AISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 112 G-VQDRFLSKIPSACGIKVGFPVSTATNCETI 142
+ + +P CG+ + + +ST TNC T+
Sbjct: 60 TKLNTNNAAALPGKCGVNIPYKISTTTNCNTV 91
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
I CG V + A C+ + G P ACC+G++ + +T D++A C CLK + S+
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVP-PACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
GV + +P CG+ + + +S +TNC T+
Sbjct: 61 GVNPNNAAALPGKCGVSIPYKISASTNCATV 91
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
I CG V++ C+ +A G A P++ACCSG++ L + T D++ C CLK A+ +
Sbjct: 1 ITCGQVNSAVGPCLTYARGGA-GPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
G+ + IPS CG+ V + +S + +C +
Sbjct: 60 GLNAGNAASIPSKCGVSVPYTISASIDCSRVS 91
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLG 112
+ CG VD+K C+ + G P P+ CC+G++ L ++ D++ +C CLK A+ G
Sbjct: 1 LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIAR--G 57
Query: 113 VQDRFLSK---IPSACGIKVGFPVSTATNCETIH 143
+ + L+ IPS C + V + +S +C I+
Sbjct: 58 IHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY 91
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLG 112
+ CG VD+K C+ + G P P+ CC+G++ L ++ D++ +C CLK A+ G
Sbjct: 1 LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIAR--G 57
Query: 113 VQDRFLSK---IPSACGIKVGFPVSTATNCETI 142
+ + L+ IPS C + V + +S +C I
Sbjct: 58 IHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL 111
AI CG V + A C+ + + P CC G++ L S +T +D++ C CLK+ A ++
Sbjct: 1 AITCGQVTSNLAPCLAYL--RNTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 112 -GVQDRFLSKIPSACGIKVGFPVSTATNCETIH 143
G+ + +PS CG+ + + +S +T+C +
Sbjct: 59 SGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL- 111
I CG VD+ C+ + G P P+ CC G++ L ++ D+++ C CLK A+ +
Sbjct: 1 IDCGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 112 GVQDRFLSKIPSACGIKVGFPVSTATNCETI 142
+ + IP CG+ + + +S +C +
Sbjct: 60 NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 55 CGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GV 113
CG VD+ C+ + G P P+ CC G++ L ++ D+++ C CLK A+ + +
Sbjct: 3 CGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL 61
Query: 114 QDRFLSKIPSACGIKVGFPVSTATNCETI 142
+ IP CG+ + + +S +C +
Sbjct: 62 NEDNARSIPPKCGVNLPYTISLNIDCSRV 90
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 62 AAACVGF---ATGKAPTPTSACCSGLQQLAQSVKTV---DDKKAIC 101
AAA VG A TP SAC SG + +A++ + + + AIC
Sbjct: 166 AAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAIC 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,284,614
Number of Sequences: 62578
Number of extensions: 100661
Number of successful extensions: 251
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 15
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)