Query 045117
Match_columns 143
No_of_seqs 158 out of 888
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 4.4E-26 9.5E-31 157.7 5.1 88 53-140 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.5 5.1E-15 1.1E-19 99.1 4.2 66 55-130 1-69 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 4.6E-14 1E-18 91.2 3.2 61 62-127 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.4 3.7E-14 8.1E-19 97.8 0.6 72 51-131 18-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.2 5.1E-12 1.1E-16 83.6 3.4 61 60-130 4-64 (66)
6 PF00234 Tryp_alpha_amyl: Prot 99.1 6.4E-12 1.4E-16 86.1 -3.2 71 56-139 9-90 (90)
7 smart00499 AAI Plant lipid tra 98.9 1.1E-09 2.4E-14 71.6 4.3 68 55-131 1-76 (79)
8 PF14547 Hydrophob_seed: Hydro 92.8 0.045 9.8E-07 37.9 0.8 76 55-140 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 91.9 0.2 4.3E-06 34.7 3.1 76 54-139 3-85 (85)
10 PF12911 OppC_N: N-terminal TM 28.5 1.3E+02 0.0028 18.0 3.9 12 15-26 5-16 (56)
11 COG1963 Uncharacterized protei 28.5 1.6E+02 0.0035 22.5 5.0 29 3-31 99-134 (153)
12 PF09771 Tmemb_18A: Transmembr 27.5 62 0.0013 23.9 2.6 32 9-41 7-39 (125)
13 PLN00214 putative protein; Pro 25.7 54 0.0012 23.9 1.9 51 34-86 12-71 (115)
14 COG1633 Uncharacterized conser 24.4 1E+02 0.0022 23.7 3.4 31 2-32 45-76 (176)
15 PF05617 Prolamin_like: Prolam 23.1 87 0.0019 19.8 2.4 18 71-88 23-40 (70)
16 KOG1962 B-cell receptor-associ 22.1 2.5E+02 0.0055 22.6 5.3 23 9-31 26-48 (216)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.92 E-value=4.4e-26 Score=157.74 Aligned_cols=88 Identities=39% Similarity=0.910 Sum_probs=82.2
Q ss_pred cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF 131 (143)
Q Consensus 53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~ 131 (143)
.+|..+...|.||++|++|++..|+++||+|++++++.++++.|++++|+|+++....+ +||.++|.+||++||+++||
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 36999999999999999997779999999999999999999999999999998877777 59999999999999999999
Q ss_pred CCCCCCCCC
Q 045117 132 PVSTATNCE 140 (143)
Q Consensus 132 pIs~~~dC~ 140 (143)
||+++|||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.54 E-value=5.1e-15 Score=99.14 Aligned_cols=66 Identities=26% Similarity=0.574 Sum_probs=52.4
Q ss_pred chhhhhccccchhhhcCCC--CCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117 55 CGTVDAKAAACVGFATGKA--PTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 55 C~~v~~~L~pCl~yl~g~~--~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p 130 (143)
|+.....|.||++|+++++ ..|++.||+++|++ |++ |+|.+.....+ +||.++|.+||++||+++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcC--CEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 4555578999999999866 36899999999985 444 77765444334 6999999999999999987
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.45 E-value=4.6e-14 Score=91.15 Aligned_cols=61 Identities=39% Similarity=0.827 Sum_probs=51.3
Q ss_pred cccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CC-ChHHHhhccccCCC
Q 045117 62 AAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GV-QDRFLSKIPSACGI 127 (143)
Q Consensus 62 L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~i-n~~ra~~LP~~Cgv 127 (143)
|.||++|++|++..|+++||++++++++. |++++|.++++..... ++ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 57999999987679999999999998752 6778888888765443 55 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.41 E-value=3.7e-14 Score=97.81 Aligned_cols=72 Identities=29% Similarity=0.703 Sum_probs=47.4
Q ss_pred cccCchhhhhccccc---hhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeecccc-ccCCCChHHHhhccccCC
Q 045117 51 AAIACGTVDAKAAAC---VGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGA-KSLGVQDRFLSKIPSACG 126 (143)
Q Consensus 51 a~~~C~~v~~~L~pC---l~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~-~~~~in~~ra~~LP~~Cg 126 (143)
...+|.. .|.|| ..|+++ +..||++||++++++.+ .|..++|.++++.. ..++||.+++..||++||
T Consensus 18 ~~~~c~~---~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg 88 (96)
T PF14368_consen 18 CCCSCAN---SLLPCCPCLCYVTG-GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGFGINVTRALALPAACG 88 (96)
T ss_dssp BTTB-HC---CCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCT
T ss_pred CcchhHH---HHhccccchhccCC-CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccCCcCHHHHHHHHHHcC
Confidence 3455644 46666 788885 67999999999999853 25678888887655 445899999999999999
Q ss_pred CCCCC
Q 045117 127 IKVGF 131 (143)
Q Consensus 127 v~~p~ 131 (143)
++.|.
T Consensus 89 ~~~~~ 93 (96)
T PF14368_consen 89 VPVPP 93 (96)
T ss_dssp SS-S-
T ss_pred CCCCC
Confidence 99884
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.25 E-value=5.1e-12 Score=83.56 Aligned_cols=61 Identities=23% Similarity=0.511 Sum_probs=48.0
Q ss_pred hccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCCChHHHhhccccCCCCCC
Q 045117 60 AKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 60 ~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~in~~ra~~LP~~Cgv~~p 130 (143)
+.|.+|++|+++ +..||++||+.+|+- + .++|..+++......||.++|..||++||+++|
T Consensus 4 ~~L~~C~~ai~~-~~~Ps~~CC~~Lk~~--------~-~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILG-GSPPSAACCAKLKEQ--------Q-SCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhC-CCCCCHHHHHHHhcC--------C-CCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC
Confidence 389999999997 478999999998872 2 466666655322225999999999999999986
No 6
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.05 E-value=6.4e-12 Score=86.10 Aligned_cols=71 Identities=23% Similarity=0.658 Sum_probs=55.8
Q ss_pred hhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeecccccc-----------CCCChHHHhhcccc
Q 045117 56 GTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKS-----------LGVQDRFLSKIPSA 124 (143)
Q Consensus 56 ~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~-----------~~in~~ra~~LP~~ 124 (143)
+.....+.+|.+|++++...|+..||++|+++ ++++.|..++....+ .+++..+|..||+.
T Consensus 9 ~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l--------~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~ 80 (90)
T PF00234_consen 9 SPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQL--------DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSM 80 (90)
T ss_dssp GTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHH
T ss_pred hhccccccccHHHHhcccccchHHHhHHHHHH--------hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33334689999999986678999999999998 356777777654443 16899999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 045117 125 CGIKVGFPVSTATNC 139 (143)
Q Consensus 125 Cgv~~p~pIs~~~dC 139 (143)
||+++|+ +||
T Consensus 81 C~v~~~~-----~~C 90 (90)
T PF00234_consen 81 CNVSPPY-----TDC 90 (90)
T ss_dssp TTSSSSS-----S-G
T ss_pred CCCCCCC-----CCC
Confidence 9999996 676
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.94 E-value=1.1e-09 Score=71.59 Aligned_cols=68 Identities=37% Similarity=0.794 Sum_probs=52.0
Q ss_pred chhhhhccccchhhhcCC--CCCCcHhhhHHHHhhhhhhcccccccccceeec--cccccC-C---CChHHHhhccccCC
Q 045117 55 CGTVDAKAAACVGFATGK--APTPTSACCSGLQQLAQSVKTVDDKKAICRCLK--AGAKSL-G---VQDRFLSKIPSACG 126 (143)
Q Consensus 55 C~~v~~~L~pCl~yl~g~--~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk--~~~~~~-~---in~~ra~~LP~~Cg 126 (143)
|..+...+.+|.+|+++. ...|+.+||++++.+. ...|+|.. .....+ . ++..++..||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 566677788999999986 3588899999999984 24577753 322222 2 59999999999999
Q ss_pred CCCCC
Q 045117 127 IKVGF 131 (143)
Q Consensus 127 v~~p~ 131 (143)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99874
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=92.78 E-value=0.045 Score=37.86 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=46.4
Q ss_pred chhhhhccccchhhhc----CCCCCCcHhhhHHHHhhhhhhcccccccccceee--cccccc-CCCChH-HHhhccccCC
Q 045117 55 CGTVDAKAAACVGFAT----GKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCL--KAGAKS-LGVQDR-FLSKIPSACG 126 (143)
Q Consensus 55 C~~v~~~L~pCl~yl~----g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Cl--k~~~~~-~~in~~-ra~~LP~~Cg 126 (143)
|.....+|.-|.+.+. .-+..|..+||+-++.+.+ ...+.|+|- |....+ +++|.+ ....|-..||
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d------~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG 75 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLAD------LDAAVCLCTAIKANVLGLINVNIPVALNLLLNACG 75 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCccc------chHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence 4433346777888771 1123467899999998864 223678885 322222 233332 4467778899
Q ss_pred CCCCCCCCCCCCCC
Q 045117 127 IKVGFPVSTATNCE 140 (143)
Q Consensus 127 v~~p~pIs~~~dC~ 140 (143)
-..| ++++|.
T Consensus 76 k~~p----~gf~C~ 85 (85)
T PF14547_consen 76 KTVP----SGFTCP 85 (85)
T ss_pred CcCc----CCCcCC
Confidence 9887 577773
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=91.90 E-value=0.2 Score=34.69 Aligned_cols=76 Identities=25% Similarity=0.482 Sum_probs=45.8
Q ss_pred CchhhhhccccchhhhcCC----CCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCC--ChHH-HhhccccCC
Q 045117 54 ACGTVDAKAAACVGFATGK----APTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGV--QDRF-LSKIPSACG 126 (143)
Q Consensus 54 ~C~~v~~~L~pCl~yl~g~----~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~i--n~~r-a~~LP~~Cg 126 (143)
.|......|.-|.+-+..- +..|..+||+-++.+.+. ....|.|-.-.++-+|| |.+. ..-|-..||
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CG 76 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCG 76 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHc
Confidence 3554445677788776321 235668999999988652 23678886322333343 3333 345556799
Q ss_pred CCCCCCCCCCCCC
Q 045117 127 IKVGFPVSTATNC 139 (143)
Q Consensus 127 v~~p~pIs~~~dC 139 (143)
-..| ++|.|
T Consensus 77 k~~P----~gf~C 85 (85)
T cd01958 77 RNVP----PGFTC 85 (85)
T ss_pred CcCC----CCCcC
Confidence 9887 45554
No 10
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=28.55 E-value=1.3e+02 Score=17.96 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 045117 15 FKSLLRELLCHL 26 (143)
Q Consensus 15 ~~~~~~~~~~~~ 26 (143)
|+.-.|+...|+
T Consensus 5 ~~~~~~~f~~nk 16 (56)
T PF12911_consen 5 WKDAWRRFRRNK 16 (56)
T ss_pred HHHHHHHHHhCc
Confidence 344444444433
No 11
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.52 E-value=1.6e+02 Score=22.47 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 045117 3 QAKVLTRYLKALFKSL-------LRELLCHLTMKNL 31 (143)
Q Consensus 3 ~~~~~~~~~~~~~~~~-------~~~~~~~~~m~~~ 31 (143)
||.+|.+....+++.. ++|++-|.-++..
T Consensus 99 QA~iLN~l~~~~~~e~~~~~~~~lKellGH~p~eV~ 134 (153)
T COG1963 99 QARILNQLIEELVNEKKDFDKKRLKELLGHTPLEVF 134 (153)
T ss_pred hHHHHHHHHHHHHHhhccCCHHHHHHHhCCChHHHH
Confidence 7888888887777544 9999998887764
No 12
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=27.52 E-value=62 Score=23.92 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 045117 9 RYLKALFKSLLRELLCHLTMKNL-FFSMVFMVSL 41 (143)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~m~~~-~~~~~l~l~~ 41 (143)
+=||| |..||.|.+.+++=.+. ++++.+++.+
T Consensus 7 eDLka-FErRLtEvI~~l~Pst~RWRiiL~v~sv 39 (125)
T PF09771_consen 7 EDLKA-FERRLTEVINSLQPSTTRWRIILVVVSV 39 (125)
T ss_pred HHHHH-HHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 34565 99999999998874444 5555444333
No 13
>PLN00214 putative protein; Provisional
Probab=25.68 E-value=54 Score=23.91 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcc-c--ccccc---cCchhhhhccccchhhhcC---CCCCCcHhhhHHHHh
Q 045117 34 SMVFMVSLIFFLA-N--VSEAA---IACGTVDAKAAACVGFATG---KAPTPTSACCSGLQQ 86 (143)
Q Consensus 34 ~~~l~l~~ll~~~-~--~a~a~---~~C~~v~~~L~pCl~yl~g---~~~~Ps~~CC~~lk~ 86 (143)
++++.|+++++++ + .+++. .+|..-.+ .-|..-+.. .+.++|.+||..+=.
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~C~~Kmt--~KCa~EI~a~i~~N~t~s~~CC~~LVk 71 (115)
T PLN00214 12 FIVVALVCAFVPVFSVEEAEAKSLWNTCLVKIT--PKCALDIIAVVFENGTLIDPCCNDLVK 71 (115)
T ss_pred HHHHHHHHhcccccchhhhHHHHHHHHHHhhcc--HhhHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444455555543 2 13332 24554322 336554432 135679999997433
No 14
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=24.37 E-value=1e+02 Score=23.71 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=26.0
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 045117 2 QQAKVLTR-YLKALFKSLLRELLCHLTMKNLF 32 (143)
Q Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~m~~~~ 32 (143)
|+|+.... .+|.+|.-+-+|-+.|.+++..+
T Consensus 45 ~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l 76 (176)
T COG1633 45 ELAERIEDEEIRKLFEDLADEEMRHLRKFEKL 76 (176)
T ss_pred HHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666 89999999999999999988743
No 15
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=23.05 E-value=87 Score=19.76 Aligned_cols=18 Identities=17% Similarity=0.658 Sum_probs=13.7
Q ss_pred CCCCCCcHhhhHHHHhhh
Q 045117 71 GKAPTPTSACCSGLQQLA 88 (143)
Q Consensus 71 g~~~~Ps~~CC~~lk~l~ 88 (143)
|.....+.+||..+..+.
T Consensus 23 g~~~~i~~~CC~~i~~~g 40 (70)
T PF05617_consen 23 GNKKNIGPECCKAINKMG 40 (70)
T ss_pred CCCCCCChHHHHHHHHHh
Confidence 433578999999988874
No 16
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.11 E-value=2.5e+02 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045117 9 RYLKALFKSLLRELLCHLTMKNL 31 (143)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~m~~~ 31 (143)
|+.+.+|++++-...-.......
T Consensus 26 r~~~~~~~~~~~~~~~~~~~~~i 48 (216)
T KOG1962|consen 26 RRRRKIFKDRLKSGLAPQVLKTI 48 (216)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 77888899888776654444443
Done!