Query 045117
Match_columns 143
No_of_seqs 158 out of 888
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 100.0 1.5E-31 5.2E-36 186.7 1.6 91 52-143 1-92 (93)
2 1afh_A Maize nonspecific lipid 100.0 2.3E-30 7.7E-35 180.4 2.6 92 52-143 1-93 (93)
3 1t12_A LTP 1, nonspecific lipi 100.0 5E-30 1.7E-34 178.2 2.1 90 52-143 1-91 (91)
4 1siy_A LTP 1, NS-LTP1, nonspec 100.0 1.2E-29 4.2E-34 176.0 2.8 90 53-143 1-91 (91)
5 1bwo_A NS-LTP1, nonspecific li 100.0 8E-30 2.7E-34 176.7 1.8 89 53-142 1-90 (90)
6 2alg_A Non-specific lipid tran 99.9 3.8E-29 1.3E-33 173.9 1.1 90 53-143 2-92 (92)
7 2rkn_A DIR1 protein, AT5G48485 99.6 1.9E-16 6.6E-21 106.1 1.0 70 52-131 2-75 (77)
8 1n89_A Lipid transfer protein; 99.4 1.8E-14 6.1E-19 94.4 0.1 58 61-130 6-65 (67)
9 1l6h_A LTP2, non-specific lipi 99.4 2.6E-14 9E-19 94.1 0.6 63 54-130 2-66 (69)
10 1hyp_A Hydrophobic protein fro 93.3 0.039 1.3E-06 36.8 2.0 73 53-141 6-79 (80)
11 3ob4_A Conglutin, maltose ABC 89.0 0.021 7.2E-07 48.2 -3.5 52 78-135 429-492 (500)
12 1sm7_A Recombinant IB pronapin 77.1 0.55 1.9E-05 32.4 0.3 61 62-130 15-101 (109)
13 2lvf_A 2S albumin; allergen, c 72.6 0.57 2E-05 32.8 -0.6 61 61-129 17-102 (114)
14 1pnb_B Napin BNIB; napin IA an 68.7 0.65 2.2E-05 30.1 -1.0 48 75-130 9-67 (75)
15 1s6d_A Albumin 8; all helix, f 67.3 1.8 6.2E-05 29.7 1.0 69 52-128 8-97 (103)
16 1bea_A Bifunctional amylase/se 63.6 1.8 6.1E-05 31.0 0.5 62 61-130 16-109 (127)
17 1hss_A 0.19 alpha-amylase inhi 61.4 0.64 2.2E-05 33.3 -2.2 62 61-130 16-104 (124)
18 1psy_A 2S albumin, RICC3; albu 44.6 2.4 8.3E-05 30.0 -1.5 70 54-131 17-120 (125)
19 1w2q_A Conglutin, ARA H 6; all 37.0 5.4 0.00018 28.3 -0.7 71 52-128 13-112 (127)
20 2juc_A PRE-mRNA-splicing facto 22.6 42 0.0015 20.7 1.7 10 12-21 9-18 (59)
21 2ds2_B Sweet protein mabinlin- 22.5 27 0.00094 22.1 0.9 45 77-129 7-63 (72)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=99.96 E-value=1.5e-31 Score=186.66 Aligned_cols=91 Identities=35% Similarity=0.852 Sum_probs=85.4
Q ss_pred ccCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117 52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 52 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p 130 (143)
+++|+++...|.||++|++| ++.|++.||+|+++|++.++|+.|||++|+|+++.+..+ +||.++|.+||++|||++|
T Consensus 1 AisC~~v~~~L~pCl~Yv~g-~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p 79 (93)
T 2ljo_A 1 AISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP 79 (93)
T ss_dssp CCSSHHHHHHHHHHHHHHTT-SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHhHHHHHcC-CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence 47899999999999999998 457999999999999999999999999999999876666 8999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 045117 131 FPVSTATNCETIH 143 (143)
Q Consensus 131 ~pIs~~~dC~~I~ 143 (143)
||||+++||++|+
T Consensus 80 ~~Is~~~dC~~v~ 92 (93)
T 2ljo_A 80 YKISTTTNCNTVK 92 (93)
T ss_dssp SCCSTTCCGGGCC
T ss_pred CCCCCCCCCCCCC
Confidence 9999999999996
No 2
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=99.96 E-value=2.3e-30 Score=180.40 Aligned_cols=92 Identities=36% Similarity=0.870 Sum_probs=86.1
Q ss_pred ccCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117 52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 52 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p 130 (143)
+++|+++...|.||++|++|+++.|+++||+|++++++.|+|+.|||..|+|++....++ +||.++|++||++||+++|
T Consensus 1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p 80 (93)
T 1afh_A 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP 80 (93)
T ss_dssp CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence 368999999999999999997778999999999999999999999999999998766677 8999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 045117 131 FPVSTATNCETIH 143 (143)
Q Consensus 131 ~pIs~~~dC~~I~ 143 (143)
||||+++||++|+
T Consensus 81 ~~is~~~dC~~v~ 93 (93)
T 1afh_A 81 YTISTSTDCSRVN 93 (93)
T ss_dssp SCCSTTCCSSSCC
T ss_pred CCCCCCCCCccCC
Confidence 9999999999996
No 3
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=99.95 E-value=5e-30 Score=178.16 Aligned_cols=90 Identities=31% Similarity=0.798 Sum_probs=84.2
Q ss_pred ccCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCC
Q 045117 52 AIACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 52 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p 130 (143)
+++|+++...|.||++|++|+++ |+ +||+|++++++.|+|+.||+..|+|+++.+.++ +||.++|++||++||+++|
T Consensus 1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p 78 (91)
T 1t12_A 1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP 78 (91)
T ss_dssp CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence 36899999999999999999777 88 999999999999999999999999998766677 8999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 045117 131 FPVSTATNCETIH 143 (143)
Q Consensus 131 ~pIs~~~dC~~I~ 143 (143)
||||+++||++|+
T Consensus 79 ~~is~~~dC~~v~ 91 (91)
T 1t12_A 79 YKISPSTDCSKVQ 91 (91)
T ss_dssp SCSSSSSCCTTCC
T ss_pred CCCCCCCCCccCC
Confidence 9999999999996
No 4
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=99.95 E-value=1.2e-29 Score=176.05 Aligned_cols=90 Identities=33% Similarity=0.835 Sum_probs=84.2
Q ss_pred cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF 131 (143)
Q Consensus 53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~ 131 (143)
++|+++...|.||++|++++++ |+++||++++++++.|+|+.|+|..|+|+++.+.++ +||.++|++||++||+++||
T Consensus 1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~ 79 (91)
T 1siy_A 1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPY 79 (91)
T ss_dssp CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCC
Confidence 4799999999999999998665 999999999999999999999999999998777777 89999999999999999999
Q ss_pred CCCCCCCCCCCC
Q 045117 132 PVSTATNCETIH 143 (143)
Q Consensus 132 pIs~~~dC~~I~ 143 (143)
|||+++||++|+
T Consensus 80 ~is~~~dC~~v~ 91 (91)
T 1siy_A 80 KISTSTNCNSIN 91 (91)
T ss_dssp CSCTTSCSSTTC
T ss_pred CCCCCCCCccCC
Confidence 999999999996
No 5
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=99.95 E-value=8e-30 Score=176.74 Aligned_cols=89 Identities=27% Similarity=0.772 Sum_probs=83.5
Q ss_pred cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF 131 (143)
Q Consensus 53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~ 131 (143)
++|+++...|.||++|++|+++ |+++||+|++++++.|+|+.|||..|+|+++.+.++ +||.++|++||++||+++||
T Consensus 1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~ 79 (90)
T 1bwo_A 1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPY 79 (90)
T ss_dssp CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCC
Confidence 4799999999999999998665 999999999999999999999999999998777777 89999999999999999999
Q ss_pred CCCCCCCCCCC
Q 045117 132 PVSTATNCETI 142 (143)
Q Consensus 132 pIs~~~dC~~I 142 (143)
|||+++||++|
T Consensus 80 ~is~~~dC~~v 90 (90)
T 1bwo_A 80 TISLNIDCSRV 90 (90)
T ss_dssp CCCTTCCGGGC
T ss_pred CCCCCCCCCCC
Confidence 99999999987
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=99.95 E-value=3.8e-29 Score=173.90 Aligned_cols=90 Identities=32% Similarity=0.784 Sum_probs=83.8
Q ss_pred cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccC-CCChHHHhhccccCCCCCCC
Q 045117 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSL-GVQDRFLSKIPSACGIKVGF 131 (143)
Q Consensus 53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~-~in~~ra~~LP~~Cgv~~p~ 131 (143)
++|+++...|.||++|+++++ .|+++||+++++|++.|+|+.|++..|+|++....++ +||.++|.+||++||+++||
T Consensus 2 ~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p~ 80 (92)
T 2alg_A 2 ITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPY 80 (92)
T ss_dssp CCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCSS
T ss_pred CChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCCC
Confidence 679999999999999999854 6889999999999999999999999999998766677 89999999999999999999
Q ss_pred CCCCCCCCCCCC
Q 045117 132 PVSTATNCETIH 143 (143)
Q Consensus 132 pIs~~~dC~~I~ 143 (143)
|||+++||++|+
T Consensus 81 ~is~~~dC~~v~ 92 (92)
T 2alg_A 81 KISASTNCATVK 92 (92)
T ss_dssp CSSTTSCGGGCC
T ss_pred CCCCCCCCccCC
Confidence 999999999986
No 7
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=99.58 E-value=1.9e-16 Score=106.10 Aligned_cols=70 Identities=26% Similarity=0.558 Sum_probs=57.8
Q ss_pred ccCchhhhhccccchhhhcCC-CCCCcHhhhHHHHhhhhhhcccccccccceeeccc---cccCCCChHHHhhccccCCC
Q 045117 52 AIACGTVDAKAAACVGFATGK-APTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAG---AKSLGVQDRFLSKIPSACGI 127 (143)
Q Consensus 52 ~~~C~~v~~~L~pCl~yl~g~-~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~---~~~~~in~~ra~~LP~~Cgv 127 (143)
..+|+++...|.||++|++++ .+.||++||+++|+. |+ .|+|.+.. ..+++||.++|+.||++||+
T Consensus 2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--------~~--~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv 71 (77)
T 2rkn_A 2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DF--ACLCGYKNSPWLGSFGVDPELASALPKQCGL 71 (77)
T ss_dssp CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC--------CH--HHHHTTTTCHHHHHHTBCHHHHHHHHHHTTC
T ss_pred cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc--------Cc--CCcCcccCCcchhhcCcCHHHHHHHHHHcCC
Confidence 467999999999999999983 468999999999872 55 67776433 34458999999999999999
Q ss_pred CCCC
Q 045117 128 KVGF 131 (143)
Q Consensus 128 ~~p~ 131 (143)
++|+
T Consensus 72 ~~p~ 75 (77)
T 2rkn_A 72 ANAP 75 (77)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9886
No 8
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=99.41 E-value=1.8e-14 Score=94.35 Aligned_cols=58 Identities=21% Similarity=0.465 Sum_probs=46.8
Q ss_pred ccccchhhhcCCCCCCcHhhhHHHHhhhhhhccccccccccee--eccccccCCCChHHHhhccccCCCCCC
Q 045117 61 KAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRC--LKAGAKSLGVQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 61 ~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~C--lk~~~~~~~in~~ra~~LP~~Cgv~~p 130 (143)
.|.||++|++++ +.||++||+++|+. ..|+| +++.....+||.++|++||++|||++|
T Consensus 6 ~L~pC~~~v~~~-~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 6 QLAVCASAILSG-AKPSGECCGNLRAQ-----------QGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVP 65 (67)
T ss_dssp TTHHHHHHHTTC-CCCCHHHHHHHHHH-----------SSHHHHGGGCSTTHHHHTCHHHHHHHHHHTSCCS
T ss_pred hcccCHHHHcCC-CCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence 789999999984 68999999999862 35666 665432226999999999999999876
No 9
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=99.41 E-value=2.6e-14 Score=94.05 Aligned_cols=63 Identities=32% Similarity=0.564 Sum_probs=49.5
Q ss_pred CchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhccccccccccee--eccccccCCCChHHHhhccccCCCCCC
Q 045117 54 ACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRC--LKAGAKSLGVQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 54 ~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~C--lk~~~~~~~in~~ra~~LP~~Cgv~~p 130 (143)
+|+.. .|.||++|++++ ..||++||+++|+. ..|+| +++.....+||.++|++||++||+++|
T Consensus 2 ~C~~~--~L~pC~~~v~~~-~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~~in~~~A~~Lp~~Cgv~~P 66 (69)
T 1l6h_A 2 GCNAG--QLTVCTGAIAGG-ARPTAACCSSLRAQ-----------QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALP 66 (69)
T ss_dssp CSTTT--THHHHHHHHTTC-CSTTHHHHHHHHHH-----------HHHHHHHTTCSSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred CCChh--hcccCHHHHcCC-CCCCHHHHHhhCCC-----------CCCCCccccCcccccccCHHHHHHHHHHcCCCCC
Confidence 46654 789999999984 57999999999872 35666 665432226999999999999999876
No 10
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=93.25 E-value=0.039 Score=36.85 Aligned_cols=73 Identities=18% Similarity=0.460 Sum_probs=48.9
Q ss_pred cCchhhhhccccchhhhcCCCCCCcHhhhHHHHhhhhhhcccccccccceeeccccccCCCChHHHhh-ccccCCCCCCC
Q 045117 53 IACGTVDAKAAACVGFATGKAPTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKSLGVQDRFLSK-IPSACGIKVGF 131 (143)
Q Consensus 53 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~~~in~~ra~~-LP~~Cgv~~p~ 131 (143)
.+|. +|.-|.+-+.| ...|..+||+-++.+.+. ..+.|+|-.-.+.++ +|.+.+.+ |-..||-..|
T Consensus 6 ~~CP----kLgvCanvL~g-~~~~~~~CC~Ll~GL~dl------eAAvCLCtaik~Lgi-lnlpv~L~llln~Cgk~~P- 72 (80)
T 1hyp_A 6 PSCP----DLSICLNILGG-SLGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI-LNLNRNLQLILNSCGRSYP- 72 (80)
T ss_dssp CCSC----CCGGGGGGGGT-CCTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC-SCHHHHHHHHHHHTTCSSC-
T ss_pred CCCC----chhHHHHHhCc-CCCCCCccchhhhCcchh------hhhhhhhhhccccce-eecChhHHHHHHHhCCcCc-
Confidence 3576 67889998854 334778999999998652 236788852112233 56666655 5578999988
Q ss_pred CCCCCCCCCC
Q 045117 132 PVSTATNCET 141 (143)
Q Consensus 132 pIs~~~dC~~ 141 (143)
+.|.|..
T Consensus 73 ---~gF~C~~ 79 (80)
T 1hyp_A 73 ---SNATCPR 79 (80)
T ss_dssp ---CCCCCSC
T ss_pred ---CCCCCCC
Confidence 6777753
No 11
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=88.99 E-value=0.021 Score=48.24 Aligned_cols=52 Identities=21% Similarity=0.602 Sum_probs=31.5
Q ss_pred HhhhHHHHhhhhhhcccccccccceeecccccc----C------CCChHHHhhccccCCCCCC--CCCCC
Q 045117 78 SACCSGLQQLAQSVKTVDDKKAICRCLKAGAKS----L------GVQDRFLSKIPSACGIKVG--FPVST 135 (143)
Q Consensus 78 ~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~----~------~in~~ra~~LP~~Cgv~~p--~pIs~ 135 (143)
.+||+.++.+.+ .++|-|.-++..+.. . ..=..+|..||..||+..| .+|++
T Consensus 429 ~~cc~~l~~~~~------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~ 492 (500)
T 3ob4_A 429 ERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDV 492 (500)
T ss_dssp HHHHHHHGGGTT------CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC-
T ss_pred HHHHHHHHhCCc------ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccC
Confidence 689999888721 134555555433221 1 1113459999999999976 56655
No 12
>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}
Probab=77.06 E-value=0.55 Score=32.40 Aligned_cols=61 Identities=30% Similarity=0.535 Sum_probs=38.0
Q ss_pred cccchhhhcC----CCC--C-------C--cHhhhHHHHhhhhhhcccccccccceeecccccc------CC-----CCh
Q 045117 62 AAACVGFATG----KAP--T-------P--TSACCSGLQQLAQSVKTVDDKKAICRCLKAGAKS------LG-----VQD 115 (143)
Q Consensus 62 L~pCl~yl~g----~~~--~-------P--s~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~------~~-----in~ 115 (143)
|.+|..|+.- ++. . + -..||..++.+ +.++-|.-++..+.. ++ -..
T Consensus 15 L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v--------~~qCrC~al~~~v~~~~~qgq~~~~~~~~~~ 86 (109)
T 1sm7_A 15 LRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIY 86 (109)
T ss_dssp CSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTT--------CHHHHTTTTHHHHHTSSCSSCCCTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhc--------CccCCCHHHHHHHHHHHHhcccchHHHHHHH
Confidence 8899999962 111 1 2 36899998886 345566656543221 21 123
Q ss_pred HHHhhccccCCCCCC
Q 045117 116 RFLSKIPSACGIKVG 130 (143)
Q Consensus 116 ~ra~~LP~~Cgv~~p 130 (143)
.+|..||+.||+..+
T Consensus 87 ~~a~~LP~~Cnl~~~ 101 (109)
T 1sm7_A 87 QIAKNLPNVCNMKQI 101 (109)
T ss_dssp HTTSSHHHHSCCCSS
T ss_pred HHHHhCHHhcCCCCC
Confidence 458899999999743
No 13
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}
Probab=72.65 E-value=0.57 Score=32.82 Aligned_cols=61 Identities=25% Similarity=0.520 Sum_probs=37.3
Q ss_pred ccccchhhhc----CCCC--CCc-------HhhhHHHHhhhhhhcccccccccceeecccccc-------C-C--C--Ch
Q 045117 61 KAAACVGFAT----GKAP--TPT-------SACCSGLQQLAQSVKTVDDKKAICRCLKAGAKS-------L-G--V--QD 115 (143)
Q Consensus 61 ~L~pCl~yl~----g~~~--~Ps-------~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~~-------~-~--i--n~ 115 (143)
.|..|..||. +++. .+. ..||+-++.+ |.+|-|.-++..+.. + + + -.
T Consensus 17 ~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv--------~~~CrC~aL~~~v~~~~qq~~~~~~~~~~~~~ 88 (114)
T 2lvf_A 17 MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMM 88 (114)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHS--------CHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHC--------CcCccCHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5888999985 2111 111 3599999987 344555555433321 1 1 1 13
Q ss_pred HHHhhccccCCCCC
Q 045117 116 RFLSKIPSACGIKV 129 (143)
Q Consensus 116 ~ra~~LP~~Cgv~~ 129 (143)
..|..||+.||++-
T Consensus 89 q~A~~LP~~C~i~p 102 (114)
T 2lvf_A 89 RLAENIPSRCNLSP 102 (114)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHhChHhcCCCc
Confidence 47999999999973
No 14
>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3
Probab=68.72 E-value=0.65 Score=30.11 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=30.6
Q ss_pred CCcHhhhHHHHhhhhhhcccccccccceeeccccc------cCC-----CChHHHhhccccCCCCCC
Q 045117 75 TPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAK------SLG-----VQDRFLSKIPSACGIKVG 130 (143)
Q Consensus 75 ~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~------~~~-----in~~ra~~LP~~Cgv~~p 130 (143)
..-..||+-++.+ +.++-|.-++.... .++ -...+|..||..||++.+
T Consensus 9 ~~~qqCC~qL~~~--------~~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~~ 67 (75)
T 1pnb_B 9 WLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI 67 (75)
T ss_dssp SCTHHHHHHHHTS--------CGGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTTT
T ss_pred HHHHHHHHHHHhC--------CcccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCCC
Confidence 4457999998886 34455555543321 131 125578999999999854
No 15
>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3
Probab=67.30 E-value=1.8 Score=29.66 Aligned_cols=69 Identities=17% Similarity=0.355 Sum_probs=43.6
Q ss_pred ccCchhhh--hc-cccchhhhcCCC------------CCCcHhhhHHHHhhhhhhcccccccccceeeccccc-cC-C--
Q 045117 52 AIACGTVD--AK-AAACVGFATGKA------------PTPTSACCSGLQQLAQSVKTVDDKKAICRCLKAGAK-SL-G-- 112 (143)
Q Consensus 52 ~~~C~~v~--~~-L~pCl~yl~g~~------------~~Ps~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~-~~-~-- 112 (143)
.-.|-.-+ .. |.+|-.|+.-.. ...-..||.-++.+ +.++-|.-++..+. .+ +
T Consensus 8 ~q~C~qq~q~~q~L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~--------~~~CrC~al~~~~Q~q~~g~q 79 (103)
T 1s6d_A 8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRM 79 (103)
T ss_dssp SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS--------CGGGSSHHHHHHTTSTTCSST
T ss_pred CcccHHHHHhChhHHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhc--------CcccCcHHHHHHHHHHhcchh
Confidence 34576543 24 899999996421 12347899998886 34555555654432 23 2
Q ss_pred --CChHHHhhccccCCCC
Q 045117 113 --VQDRFLSKIPSACGIK 128 (143)
Q Consensus 113 --in~~ra~~LP~~Cgv~ 128 (143)
-...+|..||..||++
T Consensus 80 ~~~~~q~A~~LP~~C~i~ 97 (103)
T 1s6d_A 80 RDQVMSMAHNLPIECNLM 97 (103)
T ss_dssp HHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhcHHhcCCC
Confidence 1245689999999996
No 16
>1bea_A Bifunctional amylase/serine protease inhibitor; amylase/protease bifunctional inhibitor; 1.95A {Zea mays} SCOP: a.52.1.2 PDB: 1bfa_A
Probab=63.65 E-value=1.8 Score=30.99 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=36.7
Q ss_pred ccccchhhhcCC----CC-CC----cHhhhHHHHhhhhhhcccccccccceeeccccc------------c-CCCC----
Q 045117 61 KAAACVGFATGK----AP-TP----TSACCSGLQQLAQSVKTVDDKKAICRCLKAGAK------------S-LGVQ---- 114 (143)
Q Consensus 61 ~L~pCl~yl~g~----~~-~P----s~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~------------~-~~in---- 114 (143)
.|..|..||... ++ .| ...||..+.++ +.+|=|.-+..... + ++.-
T Consensus 16 pL~~CR~Yv~~q~C~~g~~~p~e~~~~~CC~QL~~i--------~~~CRC~ALr~m~~~~~~~~~~~~~~G~~~~~pgC~ 87 (127)
T 1bea_A 16 PLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADI--------PAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCP 87 (127)
T ss_dssp CCHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHTS--------CGGGHHHHHHHHHHCBCCCSSSCCCBCCCCCBTTBC
T ss_pred cchHHHHHHHHhhcccCCCCchHHHHHHHHHHHHhc--------CcccchHHHHHHHHhhhcccccccccccccccCCCc
Confidence 478899999522 22 34 34599998886 33344444432110 1 1111
Q ss_pred ----hHHHhhc--cccCCCCCC
Q 045117 115 ----DRFLSKI--PSACGIKVG 130 (143)
Q Consensus 115 ----~~ra~~L--P~~Cgv~~p 130 (143)
...|..| |+.||++++
T Consensus 88 re~~~~~A~~Lv~P~~Cnl~~~ 109 (127)
T 1bea_A 88 REVQRGFAATLVTEAECNLATI 109 (127)
T ss_dssp HHHHHHHHTTTTSTTTTCCCCT
T ss_pred HHHHHHHHHhcCCcccCCCCCC
Confidence 3358899 999999866
No 17
>1hss_A 0.19 alpha-amylase inhibitor; cereal inhibitor, animal amylase; 2.06A {Triticum aestivum} SCOP: a.52.1.2
Probab=61.41 E-value=0.64 Score=33.26 Aligned_cols=62 Identities=18% Similarity=0.364 Sum_probs=36.6
Q ss_pred ccccchhhhcCC---CCCC---cHhhhHHHHhhhhhhcccccccccceeeccccc----------------cC-C----C
Q 045117 61 KAAACVGFATGK---APTP---TSACCSGLQQLAQSVKTVDDKKAICRCLKAGAK----------------SL-G----V 113 (143)
Q Consensus 61 ~L~pCl~yl~g~---~~~P---s~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~----------------~~-~----i 113 (143)
.|..|..||... ...| -..||..++.+ +.+|-|.-+..... .+ + +
T Consensus 16 pL~~Cr~Yv~~~C~g~~~p~~~~~~CC~QL~~i--------~~~CRC~ALr~m~~~~~~~~g~~~g~~~~e~~pgCrre~ 87 (124)
T 1hss_A 16 ALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI--------SEWCRCGALYSMLDSMYKEHGAQEGQAGTGAFPRCRREV 87 (124)
T ss_dssp CCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHTS--------CTTTHHHHHHHHHHHHHHHC---------CCSTTCCHHH
T ss_pred cchHHHHHHHHHccCCCCcHHHHHHHHHHHHhc--------CcccchHHHHHHHHhhhhhhhhhccccchhhccCCcHHH
Confidence 477899998521 2223 36799998886 23344443432211 11 0 1
Q ss_pred ChHHHhhccccCCCCCC
Q 045117 114 QDRFLSKIPSACGIKVG 130 (143)
Q Consensus 114 n~~ra~~LP~~Cgv~~p 130 (143)
-...|..||+.||++++
T Consensus 88 ~~~~A~~LP~~Cnl~~~ 104 (124)
T 1hss_A 88 VKLTAASITAVCRLPIV 104 (124)
T ss_dssp HHHHHTTHHHHTTCCEE
T ss_pred HHHHHHhchhhcCCCCC
Confidence 12268999999999876
No 18
>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3
Probab=44.62 E-value=2.4 Score=30.05 Aligned_cols=70 Identities=21% Similarity=0.472 Sum_probs=44.0
Q ss_pred Cchhhh--hccccchhhhcCC---CC-------CC-----------cHhhhHHHHhhhhhhcccccccccceeeccccc-
Q 045117 54 ACGTVD--AKAAACVGFATGK---AP-------TP-----------TSACCSGLQQLAQSVKTVDDKKAICRCLKAGAK- 109 (143)
Q Consensus 54 ~C~~v~--~~L~pCl~yl~g~---~~-------~P-----------s~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~- 109 (143)
.|-.-+ ..|.+|-.|+.-. .. .| -..||..++.+ +.+|-|.-++..+.
T Consensus 17 ~C~~e~qq~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~e~~~qe~~~~qqCC~qL~~~--------~~~C~C~aL~~~v~~ 88 (125)
T 1psy_A 17 QCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAED 88 (125)
T ss_dssp SHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC--------CSSHHHHHHHHHHHH
T ss_pred ccHHHHHHhhHHHHHHHHHHHHhcccCcchhhhcchhhcccccHHHHHHHHHHHHhc--------CcccccHHHHHHHHH
Confidence 576543 4699999999642 00 12 26899998886 45566666654431
Q ss_pred -----cC-C--C--ChHHHhhccccCCCCCCC
Q 045117 110 -----SL-G--V--QDRFLSKIPSACGIKVGF 131 (143)
Q Consensus 110 -----~~-~--i--n~~ra~~LP~~Cgv~~p~ 131 (143)
.+ + + -..+|..||..||+.=+|
T Consensus 89 ~~qQgq~~gqq~~~~~q~A~~LP~~C~i~C~~ 120 (125)
T 1psy_A 89 QIQQGQLHGEESERVAQRAGEIVSSCGVRCMR 120 (125)
T ss_dssp HHHHTTCCTTCSHHHHHHHHHHHHHHTCSTTT
T ss_pred HHHHhhhhHHHHHHHHHHHHhhHHHcCCcCCC
Confidence 12 1 1 245689999999994344
No 19
>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea}
Probab=36.95 E-value=5.4 Score=28.33 Aligned_cols=71 Identities=17% Similarity=0.458 Sum_probs=43.9
Q ss_pred ccCchhhh--hccccchhhhcCC---C-CC--C-----------cHhhhHHHHhhhhhhcccccccccceeecccc----
Q 045117 52 AIACGTVD--AKAAACVGFATGK---A-PT--P-----------TSACCSGLQQLAQSVKTVDDKKAICRCLKAGA---- 108 (143)
Q Consensus 52 ~~~C~~v~--~~L~pCl~yl~g~---~-~~--P-----------s~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~---- 108 (143)
.-.|-.-+ ..|.+|-.|+.-. . +. + -..||+-++.+.+ +++|-|.-++..+
T Consensus 13 ~qqC~qq~q~~qL~~Cq~yl~q~~~~~~~~~~~~~~~~~~~e~~lqqCC~qL~q~~~------~~qCrCeaL~q~~Q~qq 86 (127)
T 1w2q_A 13 SSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMEN------TQGCMCEALQQIMENQC 86 (127)
T ss_dssp TCCHHHHHTTCCCHHHHHHHHTGGGSSSSSCSCCCTTSCCHHHHHHHHHHHHHHTSC------CCTTHHHHHHHHHHHSC
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHhhccCCccchhhcccccHHHHHHHHHHHHhhcc------CCCccCHHHHHHHHHHH
Confidence 34576533 4699999999642 1 00 1 2679999998731 3455665565443
Q ss_pred ccC-C--CC---hHHHhhccccCCCC
Q 045117 109 KSL-G--VQ---DRFLSKIPSACGIK 128 (143)
Q Consensus 109 ~~~-~--in---~~ra~~LP~~Cgv~ 128 (143)
..+ + .. ..+|..||..||++
T Consensus 87 ~q~~gqq~~~~~~q~A~~LP~~C~i~ 112 (127)
T 1w2q_A 87 DRLQDRQMVQQFKRELMSLPQQCNFR 112 (127)
T ss_dssp TTTTTSTTHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHHHHHHHHHhHHhcCCC
Confidence 123 2 22 35689999999994
No 20
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.60 E-value=42 Score=20.65 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q 045117 12 KALFKSLLRE 21 (143)
Q Consensus 12 ~~~~~~~~~~ 21 (143)
|++|+.||.|
T Consensus 9 k~~F~~LL~e 18 (59)
T 2juc_A 9 RNIFFELFDR 18 (59)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6888888877
No 21
>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai}
Probab=22.54 E-value=27 Score=22.10 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=29.3
Q ss_pred cHhhhHHHHhhhhhhcccccccccceeeccccc------c-C-----CCChHHHhhccccCCCCC
Q 045117 77 TSACCSGLQQLAQSVKTVDDKKAICRCLKAGAK------S-L-----GVQDRFLSKIPSACGIKV 129 (143)
Q Consensus 77 s~~CC~~lk~l~~~a~t~~d~~~~C~Clk~~~~------~-~-----~in~~ra~~LP~~Cgv~~ 129 (143)
-..||+-++.+ +.++-|.-++..+. . + .=...+|..||..||+..
T Consensus 7 ~qqCC~eL~~~--------~~~CrC~aL~~~~~~~~qqgq~~~~qq~~~~~q~a~~LP~~C~l~~ 63 (72)
T 2ds2_B 7 LRQCCNQLRQV--------DRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPN 63 (72)
T ss_dssp HHHHHHHHTTS--------CGGGHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhc--------CccccCHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhHHhcCCCC
Confidence 36899998886 44555555654331 1 1 123567899999999974
Done!