BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045118
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSM 138
SL +L L N +L P +KL L+ LKL N +++ S +LK+L L+
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQEN 215
Query: 139 LW 140
W
Sbjct: 216 PW 217
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|3UJ0|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ0|B Chain B, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ4|A Chain A, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
pdb|3UJ4|B Chain B, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
Length = 604
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWL 141
L KL H L+ KQN RKL + +++LHLKS +L
Sbjct: 89 LNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKYL 132
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 149 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 184
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWL 141
L KL H L+ KQN RKL + +++LHLKS +L
Sbjct: 87 LNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKYL 130
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 77 PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQN 112
PP LSLS + E MP + L L VL+L N
Sbjct: 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 78 PSLTQLSLSNTELME----DPMPTLEKLPHLEVLK 108
P LT+L L+N L+E DP+ +L+ L +L +L+
Sbjct: 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
>pdb|1XZZ|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 1 Inositol 1,4,5-trisphosphate Receptor
Length = 246
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWL 141
L KL H L+ KQN RKL + +++LHLKS +L
Sbjct: 104 LNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKYL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,313,940
Number of Sequences: 62578
Number of extensions: 227869
Number of successful extensions: 461
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 22
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)