Query 045118
Match_columns 221
No_of_seqs 113 out of 1216
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 3.9E-15 8.5E-20 138.2 10.3 167 16-187 156-343 (968)
2 PLN00113 leucine-rich repeat r 99.6 6.5E-15 1.4E-19 136.8 10.3 167 16-187 180-367 (968)
3 KOG0617 Ras suppressor protein 99.5 8E-16 1.7E-20 111.8 -4.8 154 20-186 29-183 (264)
4 KOG0444 Cytoskeletal regulator 99.4 1.4E-14 3.1E-19 123.5 -3.0 160 16-187 214-373 (1255)
5 KOG4194 Membrane glycoprotein 99.3 2.7E-13 5.9E-18 114.7 -0.5 106 78-187 317-427 (873)
6 PLN03210 Resistant to P. syrin 99.3 2.1E-11 4.5E-16 115.0 11.6 157 18-187 651-836 (1153)
7 KOG0444 Cytoskeletal regulator 99.2 4.7E-13 1E-17 114.4 -3.6 107 72-184 217-324 (1255)
8 PLN03210 Resistant to P. syrin 99.2 1.3E-10 2.9E-15 109.7 12.2 153 24-187 611-813 (1153)
9 KOG0617 Ras suppressor protein 99.2 1.6E-13 3.5E-18 99.9 -6.0 144 16-175 48-195 (264)
10 KOG0472 Leucine-rich repeat pr 99.1 7.5E-12 1.6E-16 101.9 -0.6 109 72-187 430-539 (565)
11 KOG4194 Membrane glycoprotein 99.1 1.3E-10 2.8E-15 98.9 6.3 150 25-185 79-230 (873)
12 KOG0618 Serine/threonine phosp 99.1 9.6E-12 2.1E-16 110.1 -2.1 110 70-187 376-487 (1081)
13 KOG0472 Leucine-rich repeat pr 99.0 9.5E-12 2.1E-16 101.3 -6.1 59 126-187 250-308 (565)
14 PF14580 LRR_9: Leucine-rich r 98.9 3.3E-10 7.1E-15 84.3 1.5 105 78-187 42-151 (175)
15 KOG3207 Beta-tubulin folding c 98.9 2.1E-10 4.5E-15 94.3 0.4 173 3-187 119-312 (505)
16 cd00116 LRR_RI Leucine-rich re 98.9 9.5E-10 2.1E-14 89.7 3.9 40 18-59 75-117 (319)
17 cd00116 LRR_RI Leucine-rich re 98.9 1.1E-09 2.4E-14 89.4 3.1 61 78-139 165-232 (319)
18 PF14580 LRR_9: Leucine-rich r 98.8 2.5E-09 5.4E-14 79.6 2.8 129 20-161 15-149 (175)
19 KOG0618 Serine/threonine phosp 98.8 4.9E-10 1.1E-14 99.5 -1.3 189 16-213 256-487 (1081)
20 PRK15387 E3 ubiquitin-protein 98.8 5.1E-08 1.1E-12 87.8 9.6 99 78-187 342-456 (788)
21 KOG0532 Leucine-rich repeat (L 98.7 4.2E-10 9.2E-15 95.4 -5.9 155 16-187 90-245 (722)
22 PRK15370 E3 ubiquitin-protein 98.6 7.5E-08 1.6E-12 86.8 7.6 54 128-187 325-378 (754)
23 COG4886 Leucine-rich repeat (L 98.6 4.4E-08 9.6E-13 82.5 4.1 167 4-186 118-287 (394)
24 PRK15370 E3 ubiquitin-protein 98.5 2.7E-07 5.9E-12 83.3 7.5 140 24-187 199-357 (754)
25 KOG4237 Extracellular matrix p 98.5 2E-08 4.3E-13 82.1 -0.1 102 97-202 269-372 (498)
26 KOG2120 SCF ubiquitin ligase, 98.5 4.5E-09 9.8E-14 83.0 -4.4 166 17-189 203-376 (419)
27 KOG2120 SCF ubiquitin ligase, 98.4 3.3E-08 7.2E-13 78.2 -0.6 152 10-165 220-376 (419)
28 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 3.9E-12 57.4 2.7 59 78-139 1-60 (61)
29 PF13855 LRR_8: Leucine rich r 98.4 3.7E-07 7.9E-12 56.0 3.7 41 72-113 20-60 (61)
30 KOG4658 Apoptotic ATPase [Sign 98.4 9.9E-08 2.2E-12 87.3 1.1 86 20-113 567-653 (889)
31 PRK15387 E3 ubiquitin-protein 98.4 1.8E-06 3.9E-11 78.0 9.0 31 23-59 241-271 (788)
32 KOG1259 Nischarin, modulator o 98.3 2.7E-07 5.7E-12 73.4 1.7 157 20-187 210-410 (490)
33 PLN03150 hypothetical protein; 98.3 1.3E-06 2.7E-11 78.0 6.1 106 26-140 420-527 (623)
34 KOG1259 Nischarin, modulator o 98.3 1.5E-07 3.2E-12 74.8 -0.5 131 23-169 283-415 (490)
35 KOG1909 Ran GTPase-activating 98.2 1.3E-07 2.8E-12 76.1 -1.1 41 19-59 87-129 (382)
36 PLN03150 hypothetical protein; 98.2 2.8E-06 6.1E-11 75.8 7.0 104 80-185 420-524 (623)
37 KOG3207 Beta-tubulin folding c 98.2 1.7E-07 3.7E-12 77.5 -1.5 158 23-187 120-282 (505)
38 COG4886 Leucine-rich repeat (L 98.1 1.3E-06 2.8E-11 73.6 1.6 154 19-187 111-266 (394)
39 KOG0532 Leucine-rich repeat (L 98.1 2.6E-07 5.7E-12 78.8 -2.5 154 16-186 113-270 (722)
40 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.8E-10 72.0 2.5 133 50-194 122-270 (699)
41 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.8E-10 72.0 2.2 130 24-161 122-259 (699)
42 KOG1859 Leucine-rich repeat pr 97.7 7.7E-07 1.7E-11 78.1 -6.2 106 73-187 183-290 (1096)
43 KOG4658 Apoptotic ATPase [Sign 97.7 2.4E-05 5.3E-10 72.0 2.8 154 24-188 523-680 (889)
44 KOG4237 Extracellular matrix p 97.6 4.4E-06 9.6E-11 68.6 -2.5 107 77-185 66-173 (498)
45 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.5E-09 41.6 3.3 38 78-116 1-38 (44)
46 KOG1909 Ran GTPase-activating 97.5 2.6E-05 5.6E-10 63.1 0.2 112 73-187 116-252 (382)
47 KOG1644 U2-associated snRNP A' 97.4 0.00027 5.8E-09 53.4 5.0 66 72-139 59-124 (233)
48 KOG2982 Uncharacterized conser 97.4 0.00016 3.5E-09 57.7 3.9 39 22-60 69-107 (418)
49 KOG0531 Protein phosphatase 1, 97.3 3.8E-05 8.2E-10 65.3 -0.9 103 46-161 91-195 (414)
50 PF12799 LRR_4: Leucine Rich r 97.3 0.00031 6.7E-09 39.8 3.1 34 103-139 2-35 (44)
51 KOG1859 Leucine-rich repeat pr 97.3 5.9E-06 1.3E-10 72.8 -6.0 110 18-139 181-290 (1096)
52 KOG0531 Protein phosphatase 1, 97.3 3.1E-05 6.8E-10 65.9 -1.9 85 20-115 91-175 (414)
53 KOG4579 Leucine-rich repeat (L 97.1 2E-05 4.3E-10 55.9 -3.5 101 80-184 29-131 (177)
54 PRK15386 type III secretion pr 97.1 0.0024 5.3E-08 53.8 8.0 57 20-88 48-104 (426)
55 KOG4341 F-box protein containi 97.1 0.00019 4E-09 59.7 1.4 117 78-195 320-445 (483)
56 KOG2982 Uncharacterized conser 97.0 0.00071 1.5E-08 54.2 3.5 158 16-182 89-285 (418)
57 KOG2123 Uncharacterized conser 96.9 6.5E-05 1.4E-09 59.4 -3.2 112 78-196 19-138 (388)
58 KOG4579 Leucine-rich repeat (L 96.7 0.00011 2.5E-09 52.1 -2.6 106 24-139 27-134 (177)
59 PRK15386 type III secretion pr 96.7 0.0037 8E-08 52.7 5.6 58 46-113 48-105 (426)
60 KOG2739 Leucine-rich acidic nu 96.6 0.00093 2E-08 52.2 1.6 82 78-161 65-152 (260)
61 KOG1644 U2-associated snRNP A' 96.4 0.0077 1.7E-07 45.7 5.1 108 23-139 41-151 (233)
62 COG5238 RNA1 Ran GTPase-activa 96.3 0.0035 7.5E-08 49.7 3.1 45 16-60 84-130 (388)
63 KOG2739 Leucine-rich acidic nu 96.0 0.0031 6.8E-08 49.4 1.3 82 23-113 42-127 (260)
64 KOG2123 Uncharacterized conser 95.7 0.00049 1.1E-08 54.6 -4.1 84 23-116 18-102 (388)
65 KOG1947 Leucine rich repeat pr 95.5 0.0016 3.5E-08 56.0 -2.4 119 22-141 186-308 (482)
66 KOG3864 Uncharacterized conser 95.4 0.00087 1.9E-08 50.6 -3.5 63 125-187 122-187 (221)
67 COG5238 RNA1 Ran GTPase-activa 95.4 0.013 2.9E-07 46.5 2.7 97 16-113 22-131 (388)
68 KOG3864 Uncharacterized conser 95.4 0.0019 4.2E-08 48.8 -1.9 88 78-166 101-190 (221)
69 KOG4341 F-box protein containi 94.3 0.018 3.8E-07 48.3 1.0 110 77-187 293-412 (483)
70 PF13306 LRR_5: Leucine rich r 93.8 0.16 3.5E-06 35.3 5.0 31 78-109 35-65 (129)
71 PF13306 LRR_5: Leucine rich r 93.5 0.26 5.6E-06 34.2 5.6 79 20-109 8-88 (129)
72 PF00560 LRR_1: Leucine Rich R 93.5 0.051 1.1E-06 25.6 1.4 18 154-172 2-19 (22)
73 KOG1947 Leucine rich repeat pr 93.0 0.029 6.3E-07 48.2 0.1 109 78-187 188-306 (482)
74 PF13504 LRR_7: Leucine rich r 92.3 0.12 2.6E-06 22.7 1.6 10 153-162 2-11 (17)
75 smart00370 LRR Leucine-rich re 86.9 0.58 1.3E-05 22.7 1.8 20 78-97 2-21 (26)
76 smart00369 LRR_TYP Leucine-ric 86.9 0.58 1.3E-05 22.7 1.8 20 78-97 2-21 (26)
77 PF13516 LRR_6: Leucine Rich r 85.9 0.081 1.8E-06 25.4 -1.7 15 78-92 2-16 (24)
78 smart00367 LRR_CC Leucine-rich 84.1 0.61 1.3E-05 22.7 1.1 17 151-167 1-17 (26)
79 KOG0473 Leucine-rich repeat pr 78.8 0.032 6.9E-07 43.5 -7.0 90 70-165 33-124 (326)
80 smart00364 LRR_BAC Leucine-ric 76.4 1.8 3.8E-05 21.4 1.2 18 77-94 1-18 (26)
81 KOG3763 mRNA export factor TAP 73.6 1.2 2.6E-05 39.0 0.3 80 75-158 216-307 (585)
82 KOG0473 Leucine-rich repeat pr 68.8 0.071 1.5E-06 41.6 -7.3 85 45-139 37-122 (326)
83 smart00368 LRR_RI Leucine rich 62.9 2.7 5.9E-05 20.9 0.2 16 78-93 2-17 (28)
84 smart00365 LRR_SD22 Leucine-ri 53.5 12 0.00027 18.3 1.6 13 102-114 2-14 (26)
85 KOG3763 mRNA export factor TAP 46.1 9.6 0.00021 33.6 0.9 68 100-168 216-286 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.60 E-value=3.9e-15 Score=138.23 Aligned_cols=167 Identities=23% Similarity=0.246 Sum_probs=91.2
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc--e----e----eehhh----------cc-ccC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK--M----W----QLSRM----------IL-SEY 74 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~----~L~~L----------lp-~l~ 74 (221)
.|..++.+++|+.|+++++. ....+|..++++++|++|+++++.- . + +|+.+ +| .++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNV--LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred CChHHhcCCCCCEEECccCc--ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 55566777777777777665 4456666677777777777765310 0 0 11111 23 344
Q ss_pred cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCc
Q 045118 75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKL 154 (221)
Q Consensus 75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L 154 (221)
.+ ++|++|++++|.+....+..++.+++|++|++++|.+.+. ++.. +..+++|+.|++++|.....++..+..+++|
T Consensus 234 ~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 234 GL-TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred cC-CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 44 5555555555555443334455555555555555544322 2323 4445566666666555222334445556666
Q ss_pred cEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 155 ESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 155 ~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+.|++.+|......|..+..+++|+.|++.++.
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 666666654444555566667777777776553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.58 E-value=6.5e-15 Score=136.79 Aligned_cols=167 Identities=21% Similarity=0.266 Sum_probs=123.6
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc--e----e----eehhh----------cc-ccC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK--M----W----QLSRM----------IL-SEY 74 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~----~L~~L----------lp-~l~ 74 (221)
.|..++++++|++|++++|. ....+|..++++++|++|+++++.- . + +|+.| +| .++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQ--LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred CChhhhhCcCCCeeeccCCC--CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 55556666667777666664 4445556666666666666654210 0 0 22222 55 778
Q ss_pred cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCc
Q 045118 75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKL 154 (221)
Q Consensus 75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L 154 (221)
.+ ++|+.|++++|.+....+..++.+++|++|++++|.+.+. ++.. +..+++|+.|++.+|......+..++.+++|
T Consensus 258 ~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 258 NL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred CC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 88 9999999999998866667888999999999998887654 5545 6678999999999988444556677889999
Q ss_pred cEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 155 ESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 155 ~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+.|++++|.....+|..++.+++|+.+++..+.
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 999999977656788889999999999998764
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=8e-16 Score=111.79 Aligned_cols=154 Identities=26% Similarity=0.311 Sum_probs=132.8
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhh
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTL 98 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l 98 (221)
+-.|.++..|.++++ -...+|+.+..+.+|+.|++.++ ++++ +| .++++ ++|+.|++.-|++...+ ..+
T Consensus 29 Lf~~s~ITrLtLSHN---Kl~~vppnia~l~nlevln~~nn----qie~-lp~~issl-~klr~lnvgmnrl~~lp-rgf 98 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN---KLTVVPPNIAELKNLEVLNLSNN----QIEE-LPTSISSL-PKLRILNVGMNRLNILP-RGF 98 (264)
T ss_pred ccchhhhhhhhcccC---ceeecCCcHHHhhhhhhhhcccc----hhhh-cChhhhhc-hhhhheecchhhhhcCc-ccc
Confidence 445788889999999 47888999999999999999986 5566 67 89999 99999999999988554 789
Q ss_pred ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcC
Q 045118 99 EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSL 178 (221)
Q Consensus 99 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 178 (221)
+.+|.|+.|+++.|+.....+|.. +..+..|+.|.+.++. .+-+|.+.|.+.+||.|.+.. +.+-++|.+++.++.|
T Consensus 99 gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRL 175 (264)
T ss_pred CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHH
Confidence 999999999999999887767766 6667888888888877 788899999999999999998 5566899999999999
Q ss_pred cEEEccCC
Q 045118 179 CKLELHWP 186 (221)
Q Consensus 179 ~~l~l~~~ 186 (221)
++++|.++
T Consensus 176 relhiqgn 183 (264)
T KOG0617|consen 176 RELHIQGN 183 (264)
T ss_pred HHHhcccc
Confidence 99999885
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.39 E-value=1.4e-14 Score=123.48 Aligned_cols=160 Identities=26% Similarity=0.313 Sum_probs=136.2
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCc
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPM 95 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~ 95 (221)
+|..+..|.||+.++++.| ....+|+.+-++++|+.|+++++ ++.+|--..+.. .+|+.|+++.|.++..|
T Consensus 214 ~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N----~iteL~~~~~~W-~~lEtLNlSrNQLt~LP- 284 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN----KITELNMTEGEW-ENLETLNLSRNQLTVLP- 284 (1255)
T ss_pred CCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC----ceeeeeccHHHH-hhhhhhccccchhccch-
Confidence 8888999999999999999 57889999999999999999985 334421145556 78999999999998765
Q ss_pred hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccC
Q 045118 96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCI 175 (221)
Q Consensus 96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l 175 (221)
.++..++.|+.|...+|...-+.+|.. ++.+..|+.+...++. ++-+|..+..+++|++|.++. +.+-++|.+|.-+
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLL 361 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccc-cceeechhhhhhc
Confidence 678899999999998887665568866 8899999999988877 888898999999999999986 6677899999999
Q ss_pred CcCcEEEccCCC
Q 045118 176 KSLCKLELHWPQ 187 (221)
Q Consensus 176 ~~L~~l~l~~~~ 187 (221)
+.|+.|++..+|
T Consensus 362 ~~l~vLDlreNp 373 (1255)
T KOG0444|consen 362 PDLKVLDLRENP 373 (1255)
T ss_pred CCcceeeccCCc
Confidence 999999999876
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.30 E-value=2.7e-13 Score=114.74 Aligned_cols=106 Identities=25% Similarity=0.281 Sum_probs=71.2
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce----eeCCCCCCC
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW----TMGAGAMPK 153 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~----~~~~~~l~~ 153 (221)
++|+.|++++|++...+...+.-+..|++|+++.|++..- -... +..+.+|+.|+|+.+. +... ...+..+++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~a-f~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-AEGA-FVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPS 393 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-HhhH-HHHhhhhhhhcCcCCe-EEEEEecchhhhccchh
Confidence 6677777777766666656666666666666666665431 0112 3356788888888776 3322 222445888
Q ss_pred ccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 154 LESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 154 L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
|++|.+.+ ++++++|. .+..++.|++|++.++.
T Consensus 394 LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 99999988 77888876 57888999999988765
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.29 E-value=2.1e-11 Score=115.03 Aligned_cols=157 Identities=23% Similarity=0.220 Sum_probs=85.4
Q ss_pred hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchh
Q 045118 18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT 97 (221)
Q Consensus 18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~ 97 (221)
+.++.+++|+.|++++|. ....+|.+++++++|+.|++++.. +++. +|....+ ++|+.|++++|......+.
T Consensus 651 p~ls~l~~Le~L~L~~c~--~L~~lp~si~~L~~L~~L~L~~c~---~L~~-Lp~~i~l-~sL~~L~Lsgc~~L~~~p~- 722 (1153)
T PLN03210 651 PDLSMATNLETLKLSDCS--SLVELPSSIQYLNKLEDLDMSRCE---NLEI-LPTGINL-KSLYRLNLSGCSRLKSFPD- 722 (1153)
T ss_pred CccccCCcccEEEecCCC--CccccchhhhccCCCCEEeCCCCC---CcCc-cCCcCCC-CCCCEEeCCCCCCcccccc-
Confidence 346667777777777665 556677777777777777776521 1122 3311133 4555555555432111000
Q ss_pred hccCCCCcEEEecCCccCCceeeee-----------------------------CCCCCCcccEEeccccccccceeeCC
Q 045118 98 LEKLPHLEVLKLKQNSYLERKLACV-----------------------------GCSSFSQLKILHLKSMLWLEEWTMGA 148 (221)
Q Consensus 98 l~~l~~L~~L~l~~~~~~~~~l~~~-----------------------------~~~~~~~L~~L~L~~~~~l~~~~~~~ 148 (221)
..++|++|+++++.+.. +|.. ....+++|+.|++++|+.+..+|..+
T Consensus 723 --~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 723 --ISTNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred --ccCCcCeeecCCCcccc--ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh
Confidence 12234444443333211 1100 01123466777777776666667667
Q ss_pred CCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 149 GAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 149 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+.+++|+.|++++|..+..+|..+ .+++|++|++.+|.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 777777777777777777776554 56667777776654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.21 E-value=4.7e-13 Score=114.42 Aligned_cols=107 Identities=22% Similarity=0.194 Sum_probs=53.4
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCC
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAM 151 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l 151 (221)
.+..+ .+|..++++.|.+... +..+-.+++|+.|++++|.+.. +... .+...+|++|+++.+. +..+|..+..+
T Consensus 217 sld~l-~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~ite--L~~~-~~~W~~lEtLNlSrNQ-Lt~LP~avcKL 290 (1255)
T KOG0444|consen 217 SLDDL-HNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITE--LNMT-EGEWENLETLNLSRNQ-LTVLPDAVCKL 290 (1255)
T ss_pred chhhh-hhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceee--eecc-HHHHhhhhhhccccch-hccchHHHhhh
Confidence 44444 5555555555555432 2445555566666665555544 3322 3344555555555554 44455555555
Q ss_pred CCccEEEecCCc-cccCcchhhccCCcCcEEEcc
Q 045118 152 PKLESLILNPCA-YLRKLPEELWCIKSLCKLELH 184 (221)
Q Consensus 152 ~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~l~l~ 184 (221)
++|++|.+.++. .+..+|.+|+.+..|+.++..
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 555555555422 223445555555554444433
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.21 E-value=1.3e-10 Score=109.66 Aligned_cols=153 Identities=21% Similarity=0.231 Sum_probs=91.5
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPH 103 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 103 (221)
.+|++|++.++ ....++..+..+++|++|+++++. .+.. +|.+..+ ++|+.|++.+|......+..++.+++
T Consensus 611 ~~L~~L~L~~s---~l~~L~~~~~~l~~Lk~L~Ls~~~---~l~~-ip~ls~l-~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 611 ENLVKLQMQGS---KLEKLWDGVHSLTGLRNIDLRGSK---NLKE-IPDLSMA-TNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred cCCcEEECcCc---cccccccccccCCCCCEEECCCCC---CcCc-CCccccC-CcccEEEecCCCCccccchhhhccCC
Confidence 45555555554 234455556667777777776521 1122 5566666 77777777776544333456667777
Q ss_pred CcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc--------------------eeeCC---------------
Q 045118 104 LEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE--------------------WTMGA--------------- 148 (221)
Q Consensus 104 L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--------------------~~~~~--------------- 148 (221)
|+.|++++|.... .+|.. . .+++|+.|++++|..+.. +|...
T Consensus 683 L~~L~L~~c~~L~-~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 683 LEDLDMSRCENLE-ILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS 759 (1153)
T ss_pred CCEEeCCCCCCcC-ccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccch
Confidence 7777776543221 13322 2 345555555555533322 22110
Q ss_pred ---------------CCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 149 ---------------GAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 149 ---------------~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
...++|+.|++++|+.+..+|..++++++|+.|++..|.
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 012567888888888888889889999999999999875
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=1.6e-13 Score=99.87 Aligned_cols=144 Identities=25% Similarity=0.356 Sum_probs=121.3
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh--cc-ccCcCCCCccEEEeecccCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM--IL-SEYKFPPSLTQLSLSNTELME 92 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L--lp-~l~~~~~~L~~L~l~~~~~~~ 92 (221)
+|+.++.+.||+.|+++++. .+.+|.++..+++|+.|++.- .++ +| .++++ |-|+.|++.+|.+.+
T Consensus 48 vppnia~l~nlevln~~nnq---ie~lp~~issl~klr~lnvgm-------nrl~~lprgfgs~-p~levldltynnl~e 116 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQ---IEELPTSISSLPKLRILNVGM-------NRLNILPRGFGSF-PALEVLDLTYNNLNE 116 (264)
T ss_pred cCCcHHHhhhhhhhhcccch---hhhcChhhhhchhhhheecch-------hhhhcCccccCCC-chhhhhhcccccccc
Confidence 78889999999999999995 789999999999999999976 333 78 89999 999999999999886
Q ss_pred CCch-hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchh
Q 045118 93 DPMP-TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE 171 (221)
Q Consensus 93 ~~~~-~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 171 (221)
..++ -+-.+.-|+.|.+++|.+.- +|.. .+.+.+|+.|.+..+. +-++|.+.|.+.+|+.|.+.+ +.+..+|-+
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe~--lp~d-vg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFEI--LPPD-VGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCccc--CChh-hhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc-ceeeecChh
Confidence 5433 45567889999998888744 6656 8899999999999888 777899999999999999998 567777766
Q ss_pred hccC
Q 045118 172 LWCI 175 (221)
Q Consensus 172 ~~~l 175 (221)
++++
T Consensus 192 l~~l 195 (264)
T KOG0617|consen 192 LANL 195 (264)
T ss_pred hhhh
Confidence 5544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=7.5e-12 Score=101.93 Aligned_cols=109 Identities=25% Similarity=0.239 Sum_probs=74.8
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCC
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGA 150 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~ 150 (221)
.++++ ++|..|++++|-+...| ..++.+..|+.|+++.|+|.. +|.+ ...++.++.+-.+++. +..++.. .+.
T Consensus 430 ~l~~l-~kLt~L~L~NN~Ln~LP-~e~~~lv~Lq~LnlS~NrFr~--lP~~-~y~lq~lEtllas~nq-i~~vd~~~l~n 503 (565)
T KOG0472|consen 430 ELSQL-QKLTFLDLSNNLLNDLP-EEMGSLVRLQTLNLSFNRFRM--LPEC-LYELQTLETLLASNNQ-IGSVDPSGLKN 503 (565)
T ss_pred HHHhh-hcceeeecccchhhhcc-hhhhhhhhhheeccccccccc--chHH-HhhHHHHHHHHhcccc-ccccChHHhhh
Confidence 34556 66666667666666554 344455557777776666544 4444 4445555555445454 5556444 667
Q ss_pred CCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 151 MPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
|..|.+|++.+ +.+.++|.++++|++|++|.+.++|
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 89999999987 7788999999999999999999987
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-10 Score=98.86 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=77.1
Q ss_pred CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCC
Q 045118 25 NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL 104 (221)
Q Consensus 25 ~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 104 (221)
.-+.|++++|. ....-+..|.++++|+.+++..| -|.. +|.++....+|++|++.+|.+.....+.++.++.|
T Consensus 79 ~t~~LdlsnNk--l~~id~~~f~nl~nLq~v~l~~N----~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNK--LSHIDFEFFYNLPNLQEVNLNKN----ELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ceeeeeccccc--cccCcHHHHhcCCcceeeeeccc----hhhh-cccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 34456666665 44555666677777777777653 1222 55443332456666666666655544555566666
Q ss_pred cEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEE
Q 045118 105 EVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLE 182 (221)
Q Consensus 105 ~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~ 182 (221)
+.|+++.|.+...+.+. +..-.++++|+|.++. ++++. ..+..+.+|-.|.+++ +.++.+|. .+.++++|+.|+
T Consensus 152 rslDLSrN~is~i~~~s--fp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPS--FPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhchhhcccCCC--CCCCCCceEEeecccc-ccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhh
Confidence 66666665554421111 1122345566665555 44442 2233344555555555 34445543 234455555555
Q ss_pred ccC
Q 045118 183 LHW 185 (221)
Q Consensus 183 l~~ 185 (221)
+..
T Consensus 228 Lnr 230 (873)
T KOG4194|consen 228 LNR 230 (873)
T ss_pred ccc
Confidence 544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.07 E-value=9.6e-12 Score=110.09 Aligned_cols=110 Identities=28% Similarity=0.307 Sum_probs=80.8
Q ss_pred ccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCC
Q 045118 70 ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAG 149 (221)
Q Consensus 70 lp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 149 (221)
+|.+..+ .+|+.|++++|++...+...+.++..|++|++++|.... ++.. ...+++|++|...++. +..+| .+.
T Consensus 376 ~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~t-va~~~~L~tL~ahsN~-l~~fP-e~~ 449 (1081)
T KOG0618|consen 376 FPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDT-VANLGRLHTLRAHSNQ-LLSFP-ELA 449 (1081)
T ss_pred hhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHH-HHhhhhhHHHhhcCCc-eeech-hhh
Confidence 5566777 788888888888887776777888888888888887655 4545 5677788888777766 66677 666
Q ss_pred CCCCccEEEecCCccccCc--chhhccCCcCcEEEccCCC
Q 045118 150 AMPKLESLILNPCAYLRKL--PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~l~l~~~~ 187 (221)
++++|+.++++. +.+..+ |..... |+|++|+++++.
T Consensus 450 ~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCc
Confidence 788999999986 555443 332222 789999999877
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.96 E-value=9.5e-12 Score=101.34 Aligned_cols=59 Identities=25% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 126 SFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 126 ~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
.++++..|++.++. ++++|.+...+.+|.+|++++ +.++.+|..++++ .|+.+.+.|+|
T Consensus 250 ~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 57899999999988 999999988899999999997 7788999999999 99999999998
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=3.3e-10 Score=84.32 Aligned_cols=105 Identities=23% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee--CCCCCCCcc
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM--GAGAMPKLE 155 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~ 155 (221)
.+|+.|++++|.+... +.+..+++|++|++++|++.. +...-...+|+|+.|.+.++. +.++.. .+..+|+|+
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLR 116 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcc
Confidence 4555556665555533 244455556666665555543 211101135556666655554 333311 123456666
Q ss_pred EEEecCCccccCc---chhhccCCcCcEEEccCCC
Q 045118 156 SLILNPCAYLRKL---PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 156 ~L~l~~~~~l~~~---~~~~~~l~~L~~l~l~~~~ 187 (221)
.|++.+|+....- ...+..+|+|+.|+-....
T Consensus 117 ~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 117 VLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred eeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 6666665432211 2246778888888765543
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.1e-10 Score=94.34 Aligned_cols=173 Identities=25% Similarity=0.275 Sum_probs=108.8
Q ss_pred CcceeceecCCCC---Ch---hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh-cc----
Q 045118 3 NLIFISALHPSSC---TP---DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM-IL---- 71 (221)
Q Consensus 3 ~L~~L~~~~~~~~---~~---~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L-lp---- 71 (221)
+++.|..+..+.. .+ +....|+++|.|+++.|-...+..+......+++|+.|+++.| +| .|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-------rl~~~~~s~ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-------RLSNFISSN 191 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-------cccCCcccc
Confidence 3445555544433 22 3566799999999999974445666778888999999999984 21 12
Q ss_pred ccCcCCCCccEEEeecccCCCCC-chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee--eCC
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT--MGA 148 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~ 148 (221)
.-..+ ++|+.|.++.|+++... ...+..+|+|+.|.+..|..... .... ...++.|+.|+|++++ +.+++ ...
T Consensus 192 ~~~~l-~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~-~~i~~~L~~LdLs~N~-li~~~~~~~~ 267 (505)
T KOG3207|consen 192 TTLLL-SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATS-TKILQTLQELDLSNNN-LIDFDQGYKV 267 (505)
T ss_pred chhhh-hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecch-hhhhhHHhhccccCCc-cccccccccc
Confidence 11245 78899999999887433 23455688888888877742110 1112 3356778888887777 44443 334
Q ss_pred CCCCCccEEEecCCccccCc--chh-----hccCCcCcEEEccCCC
Q 045118 149 GAMPKLESLILNPCAYLRKL--PEE-----LWCIKSLCKLELHWPQ 187 (221)
Q Consensus 149 ~~l~~L~~L~l~~~~~l~~~--~~~-----~~~l~~L~~l~l~~~~ 187 (221)
+.||.|..|.++.|. +.++ |.. ...+++|+.|.+..++
T Consensus 268 ~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred ccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 557777777776632 2222 221 2446777777776665
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=9.5e-10 Score=89.71 Aligned_cols=40 Identities=23% Similarity=0.156 Sum_probs=20.4
Q ss_pred hhcCCCCCccEEEEEecCCccccchhHhhccCC---CCcEEEeee
Q 045118 18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLH---KLECLKLVN 59 (221)
Q Consensus 18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~---~L~~L~l~~ 59 (221)
..++++++|++|+++++. .....+..+..+. +|++|++++
T Consensus 75 ~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~~~~L~~L~ls~ 117 (319)
T cd00116 75 QGLTKGCGLQELDLSDNA--LGPDGCGVLESLLRSSSLQELKLNN 117 (319)
T ss_pred HHHHhcCceeEEEccCCC--CChhHHHHHHHHhccCcccEEEeeC
Confidence 345556666666666654 2223333333333 366666655
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.88 E-value=1.1e-09 Score=89.37 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEeccccc
Q 045118 78 PSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L~~~~ 139 (221)
++|++|++++|.+...... .+..+++|++|++++|.+.+.. +... ...+++|++|++++|.
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNN 232 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCCc
Confidence 4455555555544422111 1223345555555544433211 1111 2234555555555544
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=2.5e-09 Score=79.62 Aligned_cols=129 Identities=26% Similarity=0.324 Sum_probs=45.8
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhc-cCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhh
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLC-KLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTL 98 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l 98 (221)
+.+...+|+|++.++. ...+ +.++ .+.+|+.|+++.+ .+++ ++.+..+ ++|+.|++++|+++... +.+
T Consensus 15 ~~n~~~~~~L~L~~n~---I~~I-e~L~~~l~~L~~L~Ls~N----~I~~-l~~l~~L-~~L~~L~L~~N~I~~i~-~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ---ISTI-ENLGATLDKLEVLDLSNN----QITK-LEGLPGL-PRLKTLDLSNNRISSIS-EGL 83 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS------S---TT-----TT--EEE--SS---S-C-HHH
T ss_pred cccccccccccccccc---cccc-cchhhhhcCCCEEECCCC----CCcc-ccCccCh-hhhhhcccCCCCCCccc-cch
Confidence 3345568888888885 2332 3444 5788899999875 3344 5566667 88999999999888654 233
Q ss_pred -ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee----eCCCCCCCccEEEecC
Q 045118 99 -EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT----MGAGAMPKLESLILNP 161 (221)
Q Consensus 99 -~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~----~~~~~l~~L~~L~l~~ 161 (221)
..+++|+.|++++|.+..-.-... ...+++|+.|++.+++ +.+-+ .-+..+|+|+.|+-..
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHH-HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 468899999998888764222223 5578899999998888 33221 1123467777776543
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=4.9e-10 Score=99.55 Aligned_cols=189 Identities=21% Similarity=0.246 Sum_probs=130.5
Q ss_pred ChhhcCCCCCccEEEEEecCC--------------------ccccchhHhhccCCCCcEEEeeecCc------ee-----
Q 045118 16 TPDILGRLPNVRTFRISGDLS--------------------YYHSGVSKSLCKLHKLECLKLVNKGK------MW----- 64 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~--------------------~~~~~~~~~l~~l~~L~~L~l~~~~~------~~----- 64 (221)
.|+.++.+.+|..+.+.+|.. .....+|+.+.+++.|++|+++.+.- ++
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 556667777777776666540 02344566777788888888877410 00
Q ss_pred eehhh---------ccccC--cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEE
Q 045118 65 QLSRM---------ILSEY--KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKIL 133 (221)
Q Consensus 65 ~L~~L---------lp~l~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L 133 (221)
.++.+ +|..+ .+ +.|+.|.+.+|.+++...+.+..+++|+.|++++|+... +|.....+++.|++|
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~-~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNH-AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEEL 412 (1081)
T ss_pred HHHHHhhhhccccccccccchhh-HHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHH
Confidence 11111 33222 24 678889999999988777888899999999999998654 443325678899999
Q ss_pred eccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCCHHHHHHhhhccccc-cccCCCCcccc
Q 045118 134 HLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQPELRQRLRAFEDME-WRPEMLDLEPF 212 (221)
Q Consensus 134 ~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 212 (221)
+|+++. ++.++.....+++|++|.... +.+..+| .+..++.|+.+++..+. ....--...+. .++++.|+++-
T Consensus 413 ~LSGNk-L~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~---L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 413 NLSGNK-LTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNN---LSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hcccch-hhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccch---hhhhhhhhhCCCcccceeeccCC
Confidence 999998 899988888899999998877 6777889 78899999999998764 12111112222 45666666654
Q ss_pred c
Q 045118 213 D 213 (221)
Q Consensus 213 ~ 213 (221)
.
T Consensus 487 ~ 487 (1081)
T KOG0618|consen 487 T 487 (1081)
T ss_pred c
Confidence 4
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=5.1e-08 Score=87.75 Aligned_cols=99 Identities=27% Similarity=0.235 Sum_probs=64.3
Q ss_pred CCccEEEeecccCCCCCch--hh-------------c-cCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccc
Q 045118 78 PSLTQLSLSNTELMEDPMP--TL-------------E-KLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWL 141 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~--~l-------------~-~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l 141 (221)
.+|+.|++++|.+...+.. .+ . ..++|+.|++++|.+.. ++. ..++|+.|++++|. +
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~--LP~----l~s~L~~LdLS~N~-L 414 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS--LPV----LPSELKELMVSGNR-L 414 (788)
T ss_pred cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC--CCC----cccCCCEEEccCCc-C
Confidence 4678888888777654310 00 0 01245566665555443 221 13467777777776 6
Q ss_pred cceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 142 EEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 142 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
..+|.. ..+|+.|++++ +.++.+|..+..+++|+.+++.+++
T Consensus 415 ssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 415 TSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 666532 34677888887 5678899889999999999999986
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=4.2e-10 Score=95.36 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=119.8
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
+|.++..+..|..+.+..| ....+|..++++..|..|+++.+ ++.. +| .++.+| |+.|.+++|++...+
T Consensus 90 lp~~~~~f~~Le~liLy~n---~~r~ip~~i~~L~~lt~l~ls~N----qlS~-lp~~lC~lp--Lkvli~sNNkl~~lp 159 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHN---CIRTIPEAICNLEALTFLDLSSN----QLSH-LPDGLCDLP--LKVLIVSNNKLTSLP 159 (722)
T ss_pred CchHHHHHHHHHHHHHHhc---cceecchhhhhhhHHHHhhhccc----hhhc-CChhhhcCc--ceeEEEecCccccCC
Confidence 4455555555666666665 46778889999999999999885 3344 66 777773 899999999988665
Q ss_pred chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhcc
Q 045118 95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWC 174 (221)
Q Consensus 95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 174 (221)
..++..+.|..|+.+.|.+.. ++.. .+.+.+|+.|++..+. +.++|.+...+| |.+|++++ +++..+|..+.+
T Consensus 160 -~~ig~~~tl~~ld~s~nei~s--lpsq-l~~l~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~ 232 (722)
T KOG0532|consen 160 -EEIGLLPTLAHLDVSKNEIQS--LPSQ-LGYLTSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSC-NKISYLPVDFRK 232 (722)
T ss_pred -cccccchhHHHhhhhhhhhhh--chHH-hhhHHHHHHHHHhhhh-hhhCCHHHhCCc-eeeeeccc-Cceeecchhhhh
Confidence 567788889999998888765 6666 7788888988888777 777887777555 78889884 888899999999
Q ss_pred CCcCcEEEccCCC
Q 045118 175 IKSLCKLELHWPQ 187 (221)
Q Consensus 175 l~~L~~l~l~~~~ 187 (221)
++.|++|-+..+|
T Consensus 233 m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 233 MRHLQVLQLENNP 245 (722)
T ss_pred hhhheeeeeccCC
Confidence 9999999888776
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.65 E-value=7.5e-08 Score=86.80 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=31.2
Q ss_pred CcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 128 SQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 128 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
++|+.|++.+|. ++.++..+ .++|+.|++++| .++.+|..+ .++|++|++.+|.
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLPASL--PPELQVLDVSKN-QITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred ccceeccccCCc-cccCChhh--cCcccEEECCCC-CCCcCChhh--cCCcCEEECCCCc
Confidence 466666666665 55554332 256777777764 455566544 2566777776653
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=4.4e-08 Score=82.53 Aligned_cols=167 Identities=26% Similarity=0.367 Sum_probs=111.5
Q ss_pred cceeceecCCCC-ChhhcCCCC-CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccC-cCCCCc
Q 045118 4 LIFISALHPSSC-TPDILGRLP-NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEY-KFPPSL 80 (221)
Q Consensus 4 L~~L~~~~~~~~-~~~~l~~l~-~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~-~~~~~L 80 (221)
++.|........ ++...+.+. +|+.|+++.+ ....++..++.+++|+.|+++.+ ++.. +|... .. ++|
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N---~i~~l~~~~~~l~~L~~L~l~~N----~l~~-l~~~~~~~-~~L 188 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN---KIESLPSPLRNLPNLKNLDLSFN----DLSD-LPKLLSNL-SNL 188 (394)
T ss_pred eeEEecCCcccccCccccccchhhccccccccc---chhhhhhhhhccccccccccCCc----hhhh-hhhhhhhh-hhh
Confidence 444443333333 555566664 8888888888 45666677888888888888874 2333 55333 56 788
Q ss_pred cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118 81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN 160 (221)
Q Consensus 81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~ 160 (221)
+.|++++|.+...+ .......+|+++.++.|.... .+.. ...+.++..+.+.++. +...+...+.++.++.|+++
T Consensus 189 ~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~~--~~~~-~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 189 NNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIE--LLSS-LSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hheeccCCccccCc-hhhhhhhhhhhhhhcCCccee--cchh-hhhcccccccccCCce-eeeccchhccccccceeccc
Confidence 88888888887655 233455668888887775332 2333 5566777777766665 55545566778888999988
Q ss_pred CCccccCcchhhccCCcCcEEEccCC
Q 045118 161 PCAYLRKLPEELWCIKSLCKLELHWP 186 (221)
Q Consensus 161 ~~~~l~~~~~~~~~l~~L~~l~l~~~ 186 (221)
+ +.+..++. ++.+.+++++++.+.
T Consensus 264 ~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 264 N-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred c-cccccccc-ccccCccCEEeccCc
Confidence 7 55666665 778888888888774
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.52 E-value=2.7e-07 Score=83.25 Aligned_cols=140 Identities=22% Similarity=0.233 Sum_probs=70.3
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccC------------------cCCCCccEEE
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEY------------------KFPPSLTQLS 84 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~------------------~~~~~L~~L~ 84 (221)
++|+.|++++|. ...+|..+. ++|++|+++++ ++.. +| .+. .++.+|+.|+
T Consensus 199 ~~L~~L~Ls~N~---LtsLP~~l~--~nL~~L~Ls~N----~Lts-LP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNE---LKSLPENLQ--GNIKTLYANSN----QLTS-IPATLPDTIQEMELSINRITELPERLPSALQSLD 268 (754)
T ss_pred cCCcEEEecCCC---CCcCChhhc--cCCCEEECCCC----cccc-CChhhhccccEEECcCCccCcCChhHhCCCCEEE
Confidence 356777777763 344555443 46777777653 1122 22 110 0113445555
Q ss_pred eecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCcc
Q 045118 85 LSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 164 (221)
Q Consensus 85 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 164 (221)
+++|.+...+ ..+ .++|+.|++++|.+.. ++.. . .++|+.|++++|. +..+|.. ..++|+.|.+++| .
T Consensus 269 Ls~N~L~~LP-~~l--~~sL~~L~Ls~N~Lt~--LP~~-l--p~sL~~L~Ls~N~-Lt~LP~~--l~~sL~~L~Ls~N-~ 336 (754)
T PRK15370 269 LFHNKISCLP-ENL--PEELRYLSVYDNSIRT--LPAH-L--PSGITHLNVQSNS-LTALPET--LPPGLKTLEAGEN-A 336 (754)
T ss_pred CcCCccCccc-ccc--CCCCcEEECCCCcccc--Cccc-c--hhhHHHHHhcCCc-cccCCcc--ccccceeccccCC-c
Confidence 5544444322 111 1345555555544332 2211 1 2345555555544 4444322 2357888888874 4
Q ss_pred ccCcchhhccCCcCcEEEccCCC
Q 045118 165 LRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 165 l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
++.+|..+ .++|+.|++..+.
T Consensus 337 Lt~LP~~l--~~sL~~L~Ls~N~ 357 (754)
T PRK15370 337 LTSLPASL--PPELQVLDVSKNQ 357 (754)
T ss_pred cccCChhh--cCcccEEECCCCC
Confidence 66677654 3688888888764
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.50 E-value=2e-08 Score=82.06 Aligned_cols=102 Identities=22% Similarity=0.158 Sum_probs=60.6
Q ss_pred hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCc-chhhcc
Q 045118 97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKL-PEELWC 174 (221)
Q Consensus 97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~ 174 (221)
.+..+++|+.|++++|.+... -... +++...+++|.|..+. ++.+. ..+..+..|+.|++.++ .++.+ |..+..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i-~~~a-Fe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~ 344 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRI-EDGA-FEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQT 344 (498)
T ss_pred HHhhcccceEeccCCCccchh-hhhh-hcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCC-eeEEEecccccc
Confidence 355666777777766665432 1112 4455666666666655 44442 23445677888888884 44444 666778
Q ss_pred CCcCcEEEccCCCHHHHHHhhhcccccc
Q 045118 175 IKSLCKLELHWPQPELRQRLRAFEDMEW 202 (221)
Q Consensus 175 l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 202 (221)
+.+|.++.+.++|-..--++.|..+|..
T Consensus 345 ~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred cceeeeeehccCcccCccchHHHHHHHh
Confidence 8888888888876333444555544444
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.5e-09 Score=82.99 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=115.8
Q ss_pred hhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh-cc-ccCcCCCCccEEEeecccCCCCC
Q 045118 17 PDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM-IL-SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 17 ~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L-lp-~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
-..+.+|+.|+.|.++++. ..+.+...+.+-.+|+.|+++..... ... +. .+.++ +.|+.|++++|.+....
T Consensus 203 ~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~---t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 203 HGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGF---TENALQLLLSSC-SRLDELNLSWCFLFTEK 276 (419)
T ss_pred HHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeecccccccc---chhHHHHHHHhh-hhHhhcCchHhhccchh
Confidence 3446778999999999987 66777788899999999999873111 110 12 34555 89999999999887544
Q ss_pred chh-hcc-CCCCcEEEecCCccC--CceeeeeCCCCCCcccEEeccccccccc-eeeCCCCCCCccEEEecCCccccCc-
Q 045118 95 MPT-LEK-LPHLEVLKLKQNSYL--ERKLACVGCSSFSQLKILHLKSMLWLEE-WTMGAGAMPKLESLILNPCAYLRKL- 168 (221)
Q Consensus 95 ~~~-l~~-l~~L~~L~l~~~~~~--~~~l~~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~~- 168 (221)
... +.+ -++|+.|++++++-. ...+... ....|+|.+|+|++|..++. +...+-+|+.|++|.++.|..+..-
T Consensus 277 Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~ 355 (419)
T KOG2120|consen 277 VTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET 355 (419)
T ss_pred hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH
Confidence 332 222 468899999887632 1112223 34588999999998876653 2334556899999999998765311
Q ss_pred chhhccCCcCcEEEccCCCHH
Q 045118 169 PEELWCIKSLCKLELHWPQPE 189 (221)
Q Consensus 169 ~~~~~~l~~L~~l~l~~~~~~ 189 (221)
-..+...|+|.+|++.+|.++
T Consensus 356 ~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 356 LLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeeeccCcceEEEEeccccCc
Confidence 124788999999999997644
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.3e-08 Score=78.18 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=106.9
Q ss_pred ecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecc
Q 045118 10 LHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNT 88 (221)
Q Consensus 10 ~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~ 88 (221)
...++.+...+++=.+|+.|+++.+.+.....+.-.+.+++.|..|++++.+.+ +..+. .+....++|+.|+++|+
T Consensus 220 ~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~---~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 220 LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF---TEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc---chhhhHHHhhhchhhhhhhhhhh
Confidence 344555667788889999999999864333444556788999999999983221 11022 33333478999999998
Q ss_pred cCC--CCCchhh-ccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEEecCCcc
Q 045118 89 ELM--EDPMPTL-EKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAY 164 (221)
Q Consensus 89 ~~~--~~~~~~l-~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~ 164 (221)
+-. ..+...+ ..+|+|..|++++|..-....-.. +..|+.|+++.++.|..+..- ...++..|.|.+|++.+|..
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 633 2234444 479999999999887544334445 668999999999999855422 34567899999999999764
Q ss_pred c
Q 045118 165 L 165 (221)
Q Consensus 165 l 165 (221)
-
T Consensus 376 d 376 (419)
T KOG2120|consen 376 D 376 (419)
T ss_pred c
Confidence 3
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.8e-07 Score=57.36 Aligned_cols=59 Identities=34% Similarity=0.509 Sum_probs=37.4
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEeccccc
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSML 139 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~ 139 (221)
|+|++|++++|.+...+...++.+++|++|++++|.+.. ++. . +.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~-f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDA-FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTT-TTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHH-HcCCCCCCEEeCcCCc
Confidence 456777777777666655566677777777776666543 222 3 4566777777776654
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=3.7e-07 Score=55.97 Aligned_cols=41 Identities=37% Similarity=0.533 Sum_probs=21.6
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCc
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 113 (221)
++..+ ++|++|++++|.+...++.++..+++|++|++++|.
T Consensus 20 ~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred HHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44455 555555555555554444455555555555555443
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=9.9e-08 Score=87.35 Aligned_cols=86 Identities=28% Similarity=0.362 Sum_probs=59.8
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhh
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTL 98 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l 98 (221)
+..|+.||.|++++|. ....+|++++++-+|++|+++... +++ +| .++.+ ..|.+|++..+......+...
T Consensus 567 f~~m~~LrVLDLs~~~--~l~~LP~~I~~Li~LryL~L~~t~----I~~-LP~~l~~L-k~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNS--SLSKLPSSIGELVHLRYLDLSDTG----ISH-LPSGLGNL-KKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred HhhCcceEEEECCCCC--ccCcCChHHhhhhhhhcccccCCC----ccc-cchHHHHH-Hhhheeccccccccccccchh
Confidence 6778888888888775 667788888888888888887731 233 56 67777 778888887765433333344
Q ss_pred ccCCCCcEEEecCCc
Q 045118 99 EKLPHLEVLKLKQNS 113 (221)
Q Consensus 99 ~~l~~L~~L~l~~~~ 113 (221)
..+++|++|.+....
T Consensus 639 ~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccEEEeeccc
Confidence 457888888875544
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.38 E-value=1.8e-06 Score=77.99 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=18.2
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
.++|++|++++|. ...+|.. .++|++|++..
T Consensus 241 p~~Lk~LdLs~N~---LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 241 PPELRTLEVSGNQ---LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCCcEEEecCCc---cCcccCc---ccccceeeccC
Confidence 5778888888874 3334432 24555555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=2.7e-07 Score=73.36 Aligned_cols=157 Identities=21% Similarity=0.195 Sum_probs=93.4
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCcee-----eehhh------------cc---ccCcCCCC
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMW-----QLSRM------------IL---SEYKFPPS 79 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~L~~L------------lp---~l~~~~~~ 79 (221)
+.-+.+|+.+.++.+. ...+.+....-+.|+++.+.+..... ....+ -| .+... ..
T Consensus 210 l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW-q~ 285 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTW-QE 285 (490)
T ss_pred hHHhhhhheeeeeccc---hhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchH-hh
Confidence 3445677777777773 33444444445778888777631110 00110 01 12223 57
Q ss_pred ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee--------------
Q 045118 80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-------------- 145 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-------------- 145 (221)
|+.+++++|.++.++ +...-.|.++.|+++.|++.. +. . ...+++|..|+|+++. +.++.
T Consensus 286 LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~--v~-n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 286 LTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRT--VQ-N-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhccccccchhhhh-hhhhhccceeEEeccccceee--eh-h-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeeh
Confidence 778888888877655 556667888888888777543 11 2 4456778888887764 22221
Q ss_pred --------eCCCCCCCccEEEecCCccccCcc--hhhccCCcCcEEEccCCC
Q 045118 146 --------MGAGAMPKLESLILNPCAYLRKLP--EELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 146 --------~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~l~l~~~~ 187 (221)
...+.+.+|..|+++++ .+..+. .+|+++|+|+++.+.++|
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 12344666777777773 343332 368899999999998887
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.3e-06 Score=77.96 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=66.0
Q ss_pred ccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCC
Q 045118 26 VRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL 104 (221)
Q Consensus 26 Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 104 (221)
++.|+++++. ..+.+|..++++++|+.|+++++ ++...+| .++.+ ++|+.|++++|.+....+..++.+++|
T Consensus 420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~Ls~N----~l~g~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINLSGN----SIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCCC--ccccCCHHHhCCCCCCEEECCCC----cccCcCChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 5566666665 55667777777777777777763 1221155 56677 777777777777776555667777777
Q ss_pred cEEEecCCccCCceeeeeCCCC-CCcccEEecccccc
Q 045118 105 EVLKLKQNSYLERKLACVGCSS-FSQLKILHLKSMLW 140 (221)
Q Consensus 105 ~~L~l~~~~~~~~~l~~~~~~~-~~~L~~L~L~~~~~ 140 (221)
+.|++++|.+.+. +|.. +.. +.++..+++.++..
T Consensus 493 ~~L~Ls~N~l~g~-iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 493 RILNLNGNSLSGR-VPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CEEECcCCccccc-CChH-HhhccccCceEEecCCcc
Confidence 7777777765543 3332 222 23445566665543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.5e-07 Score=74.76 Aligned_cols=131 Identities=27% Similarity=0.288 Sum_probs=93.2
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLP 102 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 102 (221)
-+.|.+++++.| .+..+-++..-+|.++.|+++.|. +.. +..++.+ ++|+.|++++|.+.... .+-..+.
T Consensus 283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~----i~~-v~nLa~L-~~L~~LDLS~N~Ls~~~-Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNR----IRT-VQNLAEL-PQLQLLDLSGNLLAECV-GWHLKLG 352 (490)
T ss_pred Hhhhhhcccccc---chhhhhhhhhhccceeEEeccccc----eee-ehhhhhc-ccceEeecccchhHhhh-hhHhhhc
Confidence 357888888888 467777788888999999998742 111 3456667 88999999998877543 3444678
Q ss_pred CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce--eeCCCCCCCccEEEecCCccccCcc
Q 045118 103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLP 169 (221)
Q Consensus 103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~~~ 169 (221)
|.+.|.++.|.+.. +. |.+.+-+|..|++.++. ++.+ ....|.+|-|+++.+.+++ ++.+|
T Consensus 353 NIKtL~La~N~iE~--LS--GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET--LS--GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred CEeeeehhhhhHhh--hh--hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 88899998877533 22 25567788888888877 5555 3457888889988888854 34333
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.25 E-value=1.3e-07 Score=76.09 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=21.9
Q ss_pred hcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeee
Q 045118 19 ILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 19 ~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
.+..++.|++|+++.|.. .....+-+.+.....|++|++.+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N 129 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN 129 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc
Confidence 344456666666666651 11223334455566666666665
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.8e-06 Score=75.75 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=60.3
Q ss_pred ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEe
Q 045118 80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLIL 159 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l 159 (221)
++.|++++|.+....+..++.+++|+.|++++|.+.+. ++.. ++.+++|+.|++++|.--..+|..++.+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 45566666666654445666677777777766665433 4444 556667777777766622245555666777777777
Q ss_pred cCCccccCcchhhccC-CcCcEEEccC
Q 045118 160 NPCAYLRKLPEELWCI-KSLCKLELHW 185 (221)
Q Consensus 160 ~~~~~l~~~~~~~~~l-~~L~~l~l~~ 185 (221)
++|.....+|..++.. .++..+++.+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecC
Confidence 7655444555554432 2334444443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.7e-07 Score=77.53 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=107.1
Q ss_pred CCCccEEEEEecCCccccchh--HhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCC-chhhc
Q 045118 23 LPNVRTFRISGDLSYYHSGVS--KSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTLE 99 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~-~~~l~ 99 (221)
+..||++.+.+.. ....+ +-...+++++.|+++.+--. +...+.....++ |+|+.|+++.|++.... -..-.
T Consensus 120 ~kkL~~IsLdn~~---V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqL-p~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 120 LKKLREISLDNYR---VEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQL-PSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred HHhhhheeecCcc---ccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhc-ccchhcccccccccCCccccchh
Confidence 5678888888774 22222 45677899999999873000 001101245678 99999999999876322 11223
Q ss_pred cCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcch--hhccCCc
Q 045118 100 KLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE--ELWCIKS 177 (221)
Q Consensus 100 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~ 177 (221)
.+++|+.|.++.|++++..+... ...||+|+.|.+..+..+..-......++.|+.|++++++. -+++. ..+.+|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~-~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWI-LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHH-HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccc
Confidence 68899999999999886555555 66799999999998853333333444588999999999654 34442 3677888
Q ss_pred CcEEEccCCC
Q 045118 178 LCKLELHWPQ 187 (221)
Q Consensus 178 L~~l~l~~~~ 187 (221)
|.-+.+..+.
T Consensus 273 L~~Lnls~tg 282 (505)
T KOG3207|consen 273 LNQLNLSSTG 282 (505)
T ss_pred hhhhhccccC
Confidence 8888777654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=1.3e-06 Score=73.63 Aligned_cols=154 Identities=24% Similarity=0.304 Sum_probs=103.8
Q ss_pred hcCCCCCccEEEEEecCCccccchhHhhccCC-CCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCch
Q 045118 19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLH-KLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMP 96 (221)
Q Consensus 19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~ 96 (221)
.+..+++++.|.+.++ ....++.....++ +|+.|+++.+ +++. +| .+..+ ++|+.|++.+|.+...+ .
T Consensus 111 ~~~~~~~l~~L~l~~n---~i~~i~~~~~~~~~nL~~L~l~~N----~i~~-l~~~~~~l-~~L~~L~l~~N~l~~l~-~ 180 (394)
T COG4886 111 ELLELTNLTSLDLDNN---NITDIPPLIGLLKSNLKELDLSDN----KIES-LPSPLRNL-PNLKNLDLSFNDLSDLP-K 180 (394)
T ss_pred hhhcccceeEEecCCc---ccccCccccccchhhccccccccc----chhh-hhhhhhcc-ccccccccCCchhhhhh-h
Confidence 3444566777777777 3566666667674 8888888774 2233 44 66777 88888888888887654 2
Q ss_pred hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCC
Q 045118 97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIK 176 (221)
Q Consensus 97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~ 176 (221)
..+..++|+.|++++|.+.. ++.. .+....|+++.+.++. +...+.....+..+..+.+.+ ..+..++..++.++
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~--l~~~-~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~ 255 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISD--LPPE-IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhheeccCCcccc--Cchh-hhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhcccc
Confidence 33378888888888887765 4433 3344558888888775 444555556677777777555 44555566678888
Q ss_pred cCcEEEccCCC
Q 045118 177 SLCKLELHWPQ 187 (221)
Q Consensus 177 ~L~~l~l~~~~ 187 (221)
.++++++..+.
T Consensus 256 ~l~~L~~s~n~ 266 (394)
T COG4886 256 NLETLDLSNNQ 266 (394)
T ss_pred ccceecccccc
Confidence 88888888764
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.08 E-value=2.6e-07 Score=78.82 Aligned_cols=154 Identities=21% Similarity=0.281 Sum_probs=117.7
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
+|+.++++..|..++++.|. ...+|..++.++ |+.|-++++ ++.. +| .++.. +.|..|+.+.|.+...+
T Consensus 113 ip~~i~~L~~lt~l~ls~Nq---lS~lp~~lC~lp-Lkvli~sNN----kl~~-lp~~ig~~-~tl~~ld~s~nei~slp 182 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQ---LSHLPDGLCDLP-LKVLIVSNN----KLTS-LPEEIGLL-PTLAHLDVSKNEIQSLP 182 (722)
T ss_pred cchhhhhhhHHHHhhhccch---hhcCChhhhcCc-ceeEEEecC----cccc-CCcccccc-hhHHHhhhhhhhhhhch
Confidence 88889999999999999995 678899999887 889988884 2233 67 77877 89999999999987665
Q ss_pred chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhh--
Q 045118 95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEL-- 172 (221)
Q Consensus 95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-- 172 (221)
.-++.+..|+.|.+..|+... ++.+ ...+ .|..|+++.+. +..+|..+..|.+|+.|-+.+++ +.+-|..|
T Consensus 183 -sql~~l~slr~l~vrRn~l~~--lp~E-l~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~ 255 (722)
T KOG0532|consen 183 -SQLGYLTSLRDLNVRRNHLED--LPEE-LCSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICE 255 (722)
T ss_pred -HHhhhHHHHHHHHHhhhhhhh--CCHH-HhCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCC-CCCChHHHHh
Confidence 567889999999998888654 5555 5444 47888888766 89999999999999999998744 55555432
Q ss_pred -ccCCcCcEEEccCC
Q 045118 173 -WCIKSLCKLELHWP 186 (221)
Q Consensus 173 -~~l~~L~~l~l~~~ 186 (221)
+.+--.++|++..|
T Consensus 256 kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQAC 270 (722)
T ss_pred ccceeeeeeecchhc
Confidence 22333456666655
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.3e-05 Score=71.97 Aligned_cols=133 Identities=19% Similarity=0.231 Sum_probs=82.8
Q ss_pred CCCcEEEeeecCceeeehhhcc--c---cCcCCCCccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeC
Q 045118 50 HKLECLKLVNKGKMWQLSRMIL--S---EYKFPPSLTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVG 123 (221)
Q Consensus 50 ~~L~~L~l~~~~~~~~L~~Llp--~---l~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~ 123 (221)
.+|++|+|+|. +. +. | ++.+.|+|+.|.+.+-.+..... ....++|||+.|++++.++.. + .|
T Consensus 122 ~nL~~LdI~G~------~~-~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l--~G 190 (699)
T KOG3665|consen 122 QNLQHLDISGS------EL-FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--L--SG 190 (699)
T ss_pred HhhhhcCcccc------ch-hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--c--HH
Confidence 77888888773 11 22 3 44444899999888876654432 345578999999998887655 2 22
Q ss_pred CCCCCcccEEecccccccccee--eCCCCCCCccEEEecCCccccCc--c----hhhccCCcCcEEEccCC--CHHHHHH
Q 045118 124 CSSFSQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKL--P----EELWCIKSLCKLELHWP--QPELRQR 193 (221)
Q Consensus 124 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~~--~----~~~~~l~~L~~l~l~~~--~~~~~~~ 193 (221)
.+.+++|+.|.+.+.. ++... ..+-.+.+|+.|+++.-.....- . ..-..+|.|+.|+.++- ..++++.
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 6678888888877766 33321 12334788999999874332211 1 11234788888888763 3444444
Q ss_pred h
Q 045118 194 L 194 (221)
Q Consensus 194 l 194 (221)
+
T Consensus 270 l 270 (699)
T KOG3665|consen 270 L 270 (699)
T ss_pred H
Confidence 3
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=1.3e-05 Score=71.96 Aligned_cols=130 Identities=19% Similarity=0.256 Sum_probs=65.4
Q ss_pred CCccEEEEEecCCccccchhHhh-ccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSL-CKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLP 102 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 102 (221)
+||++|++++... ....=+..+ ..+|.|++|.+.+-.-. -.++.....+| |+|..||++++.+... .++++++
T Consensus 122 ~nL~~LdI~G~~~-~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSEL-FSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASF-PNLRSLDISGTNISNL--SGISRLK 195 (699)
T ss_pred HhhhhcCccccch-hhccHHHHHhhhCcccceEEecCceec--chhHHHHhhcc-CccceeecCCCCccCc--HHHhccc
Confidence 4677777766532 122222333 33577777777761000 00001133456 7777777777776543 5667777
Q ss_pred CCcEEEecCCccCC-ceeeeeCCCCCCcccEEeccccccccce------eeCCCCCCCccEEEecC
Q 045118 103 HLEVLKLKQNSYLE-RKLACVGCSSFSQLKILHLKSMLWLEEW------TMGAGAMPKLESLILNP 161 (221)
Q Consensus 103 ~L~~L~l~~~~~~~-~~l~~~~~~~~~~L~~L~L~~~~~l~~~------~~~~~~l~~L~~L~l~~ 161 (221)
+|+.|.+.+=.+.. ..+. . ...+.+|+.|+++.-.....- ......+|.|+.|+.++
T Consensus 196 nLq~L~mrnLe~e~~~~l~-~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLI-D-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cHHHHhccCCCCCchhhHH-H-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 77777773322221 1011 1 335677777777644321111 11122367777777665
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=7.7e-07 Score=78.14 Aligned_cols=106 Identities=26% Similarity=0.360 Sum_probs=68.3
Q ss_pred cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCC
Q 045118 73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMP 152 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~ 152 (221)
+.-+ +.++.|++++|.+..- ..+..+++|++|+++.|+... ++..+..+. .|..|.+.+|. ++++. .+.++.
T Consensus 183 Lqll-~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc-~L~~L~lrnN~-l~tL~-gie~Lk 254 (1096)
T KOG1859|consen 183 LQLL-PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGC-KLQLLNLRNNA-LTTLR-GIENLK 254 (1096)
T ss_pred HHHH-HHhhhhccchhhhhhh--HHHHhcccccccccccchhcc--ccccchhhh-hheeeeecccH-HHhhh-hHHhhh
Confidence 3445 6778888888887643 367778888888888887543 332212223 37888888777 55553 344678
Q ss_pred CccEEEecCCccccCcch--hhccCCcCcEEEccCCC
Q 045118 153 KLESLILNPCAYLRKLPE--ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 153 ~L~~L~l~~~~~l~~~~~--~~~~l~~L~~l~l~~~~ 187 (221)
+|+.|+++++ .+..+-. -+..+..|..|.+.++|
T Consensus 255 sL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888873 3332211 24667778888888876
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.68 E-value=2.4e-05 Score=72.01 Aligned_cols=154 Identities=22% Similarity=0.164 Sum_probs=101.9
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
...|...+-++. ...++.... .++|++|-+..+... +.. ++ ++..+ +.|+.||+++|.--..-|..++.+
T Consensus 523 ~~~rr~s~~~~~---~~~~~~~~~-~~~L~tLll~~n~~~--l~~-is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 523 NSVRRMSLMNNK---IEHIAGSSE-NPKLRTLLLQRNSDW--LLE-ISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred hheeEEEEeccc---hhhccCCCC-CCccceEEEeecchh--hhh-cCHHHHhhC-cceEEEECCCCCccCcCChHHhhh
Confidence 445566555553 223333322 346888888773110 122 34 57888 999999999876444445788899
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCc-ccc-CcchhhccCCcCc
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA-YLR-KLPEELWCIKSLC 179 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~l~-~~~~~~~~l~~L~ 179 (221)
-+|++|++++..+.. +|.. ++.+.+|.+|+++.+..+..++.....+++|++|.+..-. ..+ ..-..+..+.+|+
T Consensus 595 i~LryL~L~~t~I~~--LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISH--LPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhhcccccCCCccc--cchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 999999998888775 7766 8889999999998877666665555568999999988633 111 1122456677777
Q ss_pred EEEccCCCH
Q 045118 180 KLELHWPQP 188 (221)
Q Consensus 180 ~l~l~~~~~ 188 (221)
.+.++..+.
T Consensus 672 ~ls~~~~s~ 680 (889)
T KOG4658|consen 672 NLSITISSV 680 (889)
T ss_pred hheeecchh
Confidence 777765543
No 44
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.62 E-value=4.4e-06 Score=68.63 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCcc
Q 045118 77 PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLE 155 (221)
Q Consensus 77 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~ 155 (221)
|+.-..+.+..|.++.+|..+++.+++|+.|+++.|.+... -+.. +.++++|.+|-+.+.+++.+++.. ++.+.+|+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDA-FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHh-hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 45555566666666666666666666666666666655431 2223 445555555555554446655432 44455555
Q ss_pred EEEecCCccccCcchhhccCCcCcEEEccC
Q 045118 156 SLILNPCAYLRKLPEELWCIKSLCKLELHW 185 (221)
Q Consensus 156 ~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~ 185 (221)
.|.+.-|..-......+..++++..|.+.+
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence 555543221111122344455554444444
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=0.00011 Score=41.64 Aligned_cols=38 Identities=39% Similarity=0.682 Sum_probs=26.4
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCC
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLE 116 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 116 (221)
++|++|++++|.+...+ +.++.+++|+.|++++|.+..
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCCC
Confidence 46888888888887544 347788888888887777653
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.49 E-value=2.6e-05 Score=63.13 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=57.0
Q ss_pred cCcCCCCccEEEeecccCCCCCchh-------------hccCCCCcEEEecCCccCCceeee---eCCCCCCcccEEecc
Q 045118 73 EYKFPPSLTQLSLSNTELMEDPMPT-------------LEKLPHLEVLKLKQNSYLERKLAC---VGCSSFSQLKILHLK 136 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~~l~~---~~~~~~~~L~~L~L~ 136 (221)
+.+. ..|++|.+.+|++....-.. .+.-+.|+.+...+|+.-...... . +...+.|+.+.+.
T Consensus 116 l~s~-~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~-~~~~~~leevr~~ 193 (382)
T KOG1909|consen 116 LSSC-TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA-FQSHPTLEEVRLS 193 (382)
T ss_pred HHhc-cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH-HHhccccceEEEe
Confidence 3444 56666666666654322111 123356666666655543221111 1 1223566666666
Q ss_pred cccccc--ce---eeCCCCCCCccEEEecCCcccc----CcchhhccCCcCcEEEccCCC
Q 045118 137 SMLWLE--EW---TMGAGAMPKLESLILNPCAYLR----KLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 137 ~~~~l~--~~---~~~~~~l~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~l~l~~~~ 187 (221)
.+. +. ++ ...+..+|+|+.|++.++..-. .+...+...+.|.++++.+|-
T Consensus 194 qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 194 QNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred ccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 554 21 11 1223457888888888743211 122245667778888888775
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.44 E-value=0.00027 Score=53.35 Aligned_cols=66 Identities=26% Similarity=0.173 Sum_probs=30.9
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
.+..+ +.|..|.+.+|+++.+.+.--..+++|..|.+.+|.+..-.--.. ...+|+|+.|.+-+++
T Consensus 59 ~lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 59 NLPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred cCCCc-cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 34444 555666666665554442222234556666665555432100001 3345555555555554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00016 Score=57.74 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=30.4
Q ss_pred CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeec
Q 045118 22 RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK 60 (221)
Q Consensus 22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 60 (221)
.++.++++++.+|....+.++-..+.++|.|+.|+++.|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 367888888888874456667777888899999998874
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.30 E-value=3.8e-05 Score=65.33 Aligned_cols=103 Identities=26% Similarity=0.296 Sum_probs=52.5
Q ss_pred hccCCCCcEEEeeecCceeeehhhccc-cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCC
Q 045118 46 LCKLHKLECLKLVNKGKMWQLSRMILS-EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGC 124 (221)
Q Consensus 46 l~~l~~L~~L~l~~~~~~~~L~~Llp~-l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~ 124 (221)
+..+.+|+.|++..+ ++++ +.. +..+ ++|++|++++|.+... ..+..++.|+.|++++|.+.. +. . +
T Consensus 91 l~~~~~l~~l~l~~n----~i~~-i~~~l~~~-~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~-~-~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN----KIEK-IENLLSSL-VNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--IS-G-L 158 (414)
T ss_pred cccccceeeeecccc----chhh-cccchhhh-hcchheeccccccccc--cchhhccchhhheeccCcchh--cc-C-C
Confidence 555666666666553 2222 333 4555 6666666666666543 244555556666666665543 11 1 2
Q ss_pred CCCCcccEEeccccccccceeeC-CCCCCCccEEEecC
Q 045118 125 SSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNP 161 (221)
Q Consensus 125 ~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~ 161 (221)
..++.|+.+++.++. +..+... ...+.+++.+.+.+
T Consensus 159 ~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGG 195 (414)
T ss_pred ccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccC
Confidence 235566666665555 3333321 23345555555554
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.30 E-value=0.00031 Score=39.84 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=14.9
Q ss_pred CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118 103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
+|++|++++|.+.. ++.. ++.+++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~--l~~~-l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPE-LSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SS--HGGH-GTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcc--cCch-HhCCCCCCEEEecCCC
Confidence 44555555544443 3333 3445555555555444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=5.9e-06 Score=72.79 Aligned_cols=110 Identities=25% Similarity=0.228 Sum_probs=79.2
Q ss_pred hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchh
Q 045118 18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT 97 (221)
Q Consensus 18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~ 97 (221)
+.+.-++.++.|++++|. .. . .+.++.+++|++|||+.| .|++ +|.++.--.+|+.|.+++|.++.. ..
T Consensus 181 ~SLqll~ale~LnLshNk--~~-~-v~~Lr~l~~LkhLDlsyN----~L~~-vp~l~~~gc~L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNK--FT-K-VDNLRRLPKLKHLDLSYN----CLRH-VPQLSMVGCKLQLLNLRNNALTTL--RG 249 (1096)
T ss_pred HHHHHHHHhhhhccchhh--hh-h-hHHHHhcccccccccccc----hhcc-ccccchhhhhheeeeecccHHHhh--hh
Confidence 345556788999999996 32 2 348889999999999985 4455 775443313599999999988743 57
Q ss_pred hccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118 98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 98 l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
+.++.+|+.|+++.|.+.+-.--.. ...+..|+.|+|.+|+
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 7889999999999988654211112 3456788899998887
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=3.1e-05 Score=65.85 Aligned_cols=85 Identities=21% Similarity=0.324 Sum_probs=47.9
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhc
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLE 99 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~ 99 (221)
++.+++|+.|++..+. ...+...+..+++|++|+++++ .+.+ +..+..+ +.|+.|++.+|.+..+. .+.
T Consensus 91 l~~~~~l~~l~l~~n~---i~~i~~~l~~~~~L~~L~ls~N----~I~~-i~~l~~l-~~L~~L~l~~N~i~~~~--~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK---IEKIENLLSSLVNLQVLDLSFN----KITK-LEGLSTL-TLLKELNLSGNLISDIS--GLE 159 (414)
T ss_pred cccccceeeeeccccc---hhhcccchhhhhcchheecccc----cccc-ccchhhc-cchhhheeccCcchhcc--CCc
Confidence 6667777777777774 3333333566777777777763 1122 3344444 55666666666655432 444
Q ss_pred cCCCCcEEEecCCccC
Q 045118 100 KLPHLEVLKLKQNSYL 115 (221)
Q Consensus 100 ~l~~L~~L~l~~~~~~ 115 (221)
.+++|+.+++++|.+.
T Consensus 160 ~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIV 175 (414)
T ss_pred cchhhhcccCCcchhh
Confidence 4566666666555543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=2e-05 Score=55.91 Aligned_cols=101 Identities=25% Similarity=0.197 Sum_probs=58.8
Q ss_pred ccEEEeecccCCCCC--chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEE
Q 045118 80 LTQLSLSNTELMEDP--MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESL 157 (221)
Q Consensus 80 L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L 157 (221)
+..++++.|.+.... +..+....+|+..++++|.+.. ++......||-.+.+++.++. +.++|.++.++|.|+.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 334556666544221 2234455566667777776654 332212346677777777766 77777777777777777
Q ss_pred EecCCccccCcchhhccCCcCcEEEcc
Q 045118 158 ILNPCAYLRKLPEELWCIKSLCKLELH 184 (221)
Q Consensus 158 ~l~~~~~l~~~~~~~~~l~~L~~l~l~ 184 (221)
+++. +.+...|..+..+.++-.|+..
T Consensus 106 Nl~~-N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 106 NLRF-NPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred cccc-CccccchHHHHHHHhHHHhcCC
Confidence 7776 4455556555555555555443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.14 E-value=0.0024 Score=53.80 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=33.4
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecc
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNT 88 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~ 88 (221)
+..+.+++.|+++++ ....+|. --++|++|.+++.. +|.. +| ..+|++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c---~L~sLP~---LP~sLtsL~Lsnc~---nLts-LP--~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDC---DIESLPV---LPNELTEITIENCN---NLTT-LP--GSIPEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCC---CCcccCC---CCCCCcEEEccCCC---Cccc-CC--chhhhhhhheEccCc
Confidence 444788888888877 3555551 12468888887521 1121 33 123467777777776
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.13 E-value=0.00019 Score=59.67 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=61.4
Q ss_pred CCccEEEeeccc-CCCCCchhhc-cCCCCcEEEecCCccCCc-eeeeeCCCCCCcccEEeccccccccce-----eeCCC
Q 045118 78 PSLTQLSLSNTE-LMEDPMPTLE-KLPHLEVLKLKQNSYLER-KLACVGCSSFSQLKILHLKSMLWLEEW-----TMGAG 149 (221)
Q Consensus 78 ~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~ 149 (221)
++|+.|.+++|. ++......++ +++.|+.+++.++....+ .+... ..+.+.|+.+.++.|..+++- .....
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 566666666554 2222233333 355666666644442211 12222 334667777777766533332 11123
Q ss_pred CCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCCHHHHHHhh
Q 045118 150 AMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQPELRQRLR 195 (221)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~~~~~~~l~ 195 (221)
.+..|..+.+++|+.+.+-.. -+..++.|+.+++.+|..-..+.++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 356677777777776554322 3567788888888877644444333
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.00071 Score=54.15 Aligned_cols=158 Identities=21% Similarity=0.278 Sum_probs=91.9
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhh-ccCCCCcEEEeeecCcee-eehhhccccCcCCCCccEEEeeccc----
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSL-CKLHKLECLKLVNKGKMW-QLSRMILSEYKFPPSLTQLSLSNTE---- 89 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~---- 89 (221)
+...+.+|+.|+.|+++.|. ......++ ..+.+|++|-+.+.+-+| +++. ++..+ |.++.|+++.|.
T Consensus 89 I~~ile~lP~l~~LNls~N~---L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s---~l~~l-P~vtelHmS~N~~rq~ 161 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNS---LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS---SLDDL-PKVTELHMSDNSLRQL 161 (418)
T ss_pred HHHHHhcCccceEeeccCCc---CCCccccCcccccceEEEEEcCCCCChhhhhh---hhhcc-hhhhhhhhccchhhhh
Confidence 44557889999999999995 22222333 467889999998743322 1111 23334 455555555442
Q ss_pred ------CCCCCc-------------------hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce
Q 045118 90 ------LMEDPM-------------------PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW 144 (221)
Q Consensus 90 ------~~~~~~-------------------~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~ 144 (221)
...+.. .--..+||+..+.+..|.+....-... .+.+|.+--|+|..+. +.+|
T Consensus 162 n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~~~-idsw 239 (418)
T KOG2982|consen 162 NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGANN-IDSW 239 (418)
T ss_pred ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc-CCCCCcchhhhhcccc-cccH
Confidence 111110 011235677777776665544322222 4567777777777665 6666
Q ss_pred e--eCCCCCCCccEEEecCCccccCcch------hhccCCcCcEEE
Q 045118 145 T--MGAGAMPKLESLILNPCAYLRKLPE------ELWCIKSLCKLE 182 (221)
Q Consensus 145 ~--~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~l~~L~~l~ 182 (221)
. .....|++|..|.+++++-...+.- -++.+++++.|.
T Consensus 240 asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 240 ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 3 3456799999999988765443322 256777776664
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=6.5e-05 Score=59.37 Aligned_cols=112 Identities=27% Similarity=0.260 Sum_probs=67.9
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC--CCCCCCcc
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG--AGAMPKLE 155 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~--~~~l~~L~ 155 (221)
.+.++|+..+|+++++ .....|+.|+.|.|+-|.++. +. . +..+++|++|.|..+. +.++... +..+|+|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~-p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LA-P-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--ch-h-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 5667777777777533 355567777777777777654 22 1 3356677777776665 4444222 34577788
Q ss_pred EEEecCCccccCcch-----hhccCCcCcEEEccCCC-HHHHHHhhh
Q 045118 156 SLILNPCAYLRKLPE-----ELWCIKSLCKLELHWPQ-PELRQRLRA 196 (221)
Q Consensus 156 ~L~l~~~~~l~~~~~-----~~~~l~~L~~l~l~~~~-~~~~~~l~~ 196 (221)
.|.+..++.....+. .+..+|+|+.|+-...- .+..+.++.
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~ 138 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD 138 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence 888777665554433 35667777777655433 344444443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.73 E-value=0.00011 Score=52.11 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=64.0
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
..++.++++.+........+..+....+|...++++| .+++ +| +...+ +.++.|++.+|.+.+.|. .+..+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N----~fk~-fp~kft~kf-~t~t~lNl~~neisdvPe-E~Aam 99 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN----GFKK-FPKKFTIKF-PTATTLNLANNEISDVPE-ELAAM 99 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccc----hhhh-CCHHHhhcc-chhhhhhcchhhhhhchH-HHhhh
Confidence 3466777777741112223334455566777777774 2344 45 33444 678888888888876664 47788
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
+.|+.++++.|.+... +.. +..+.+|..|+..++.
T Consensus 100 ~aLr~lNl~~N~l~~~--p~v-i~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 100 PALRSLNLRFNPLNAE--PRV-IAPLIKLDMLDSPENA 134 (177)
T ss_pred HHhhhcccccCccccc--hHH-HHHHHhHHHhcCCCCc
Confidence 8888888887776652 222 3335566666655554
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.69 E-value=0.0037 Score=52.73 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=38.1
Q ss_pred hccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCc
Q 045118 46 LCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS 113 (221)
Q Consensus 46 l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 113 (221)
+..+.++++|+++++ .|.. +| .+|++|+.|++++|.--...+..+ .++|++|.+++|.
T Consensus 48 ~~~~~~l~~L~Is~c----~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDC----DIES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCC----CCcc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence 556789999999873 1222 44 566789999998865322222222 3589999997663
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.00093 Score=52.24 Aligned_cols=82 Identities=24% Similarity=0.201 Sum_probs=40.9
Q ss_pred CCccEEEeecc--cCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee----CCCCC
Q 045118 78 PSLTQLSLSNT--ELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM----GAGAM 151 (221)
Q Consensus 78 ~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~----~~~~l 151 (221)
++|++|.++.| +....-......+|+|++++++.|.+....-.-. ...+++|..|++.+|. ...+.. -+.-+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS-VTNLDDYREKVFLLL 142 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCC-ccccccHHHHHHHHh
Confidence 67777777776 3321111122345777777777776542111112 4456666677766665 222211 12235
Q ss_pred CCccEEEecC
Q 045118 152 PKLESLILNP 161 (221)
Q Consensus 152 ~~L~~L~l~~ 161 (221)
|+|+.++-..
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 6666555544
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.41 E-value=0.0077 Score=45.67 Aligned_cols=108 Identities=24% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCC-chhhccC
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTLEKL 101 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l 101 (221)
..+...++++.|.. .. ...|..+++|.+|.+..| .+..+=|.+..+.++|+.|.+.+|++.+.. +..+..+
T Consensus 41 ~d~~d~iDLtdNdl---~~-l~~lp~l~rL~tLll~nN----rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDL---RK-LDNLPHLPRLHTLLLNNN----RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC 112 (233)
T ss_pred ccccceecccccch---hh-cccCCCccccceEEecCC----cceeeccchhhhccccceEEecCcchhhhhhcchhccC
Confidence 34666778877752 22 234457899999999884 112212455555489999999999887532 4577889
Q ss_pred CCCcEEEecCCccCCce--eeeeCCCCCCcccEEeccccc
Q 045118 102 PHLEVLKLKQNSYLERK--LACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~--l~~~~~~~~~~L~~L~L~~~~ 139 (221)
|.|++|.+-+|...... =-+. +..+|+|+.|++.+-.
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yv-l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYV-LYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCchhcccCceeEE-EEecCcceEeehhhhh
Confidence 99999999888765321 1123 4468999999987654
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.33 E-value=0.0035 Score=49.73 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=30.1
Q ss_pred ChhhcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeeec
Q 045118 16 TPDILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVNK 60 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~ 60 (221)
..+.+.+|+.|+..+++.|.. .....+.+.+...+.|++|.++++
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 345677788888888888861 122233345566788888888874
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0031 Score=49.36 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=43.8
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeec--Cceeeehhhcc-ccCcCCCCccEEEeecccCCC-CCchhh
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK--GKMWQLSRMIL-SEYKFPPSLTQLSLSNTELME-DPMPTL 98 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~-~~~~~l 98 (221)
+.+|..|++.+..-.. ...+-.+++|++|.++.+ ... -. ++ ..... |+|+++++++|++.. .....+
T Consensus 42 ~~~le~ls~~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~---~~-l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT----LTNFPKLPKLKKLELSDNYRRVS---GG-LEVLAEKA-PNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred ccchhhhhhhccceee----cccCCCcchhhhhcccCCccccc---cc-ceehhhhC-CceeEEeecCCccccccccchh
Confidence 4555555555543111 123345677777777763 110 00 22 22334 778888888877763 123345
Q ss_pred ccCCCCcEEEecCCc
Q 045118 99 EKLPHLEVLKLKQNS 113 (221)
Q Consensus 99 ~~l~~L~~L~l~~~~ 113 (221)
..+.+|..|++..|.
T Consensus 113 ~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 113 KELENLKSLDLFNCS 127 (260)
T ss_pred hhhcchhhhhcccCC
Confidence 566677777775544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.00049 Score=54.55 Aligned_cols=84 Identities=24% Similarity=0.227 Sum_probs=51.2
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCC-chhhccC
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDP-MPTLEKL 101 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l 101 (221)
+.+.++|+.+++. ... .+...+|+-|+.|.++.|. +.. +..+..+ ++|+.|.++.|.+.... +..+.++
T Consensus 18 l~~vkKLNcwg~~---L~D-Isic~kMp~lEVLsLSvNk----Iss-L~pl~rC-trLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCG---LDD-ISICEKMPLLEVLSLSVNK----ISS-LAPLQRC-TRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCC---ccH-HHHHHhcccceeEEeeccc----ccc-chhHHHH-HHHHHHHHHhcccccHHHHHHHhcC
Confidence 4567778777774 222 2334567888888887631 011 2233334 77888888877776533 4567777
Q ss_pred CCCcEEEecCCccCC
Q 045118 102 PHLEVLKLKQNSYLE 116 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~ 116 (221)
|+|+.|.+..|...+
T Consensus 88 psLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCG 102 (388)
T ss_pred chhhhHhhccCCccc
Confidence 888888887665443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.45 E-value=0.0016 Score=55.96 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=62.1
Q ss_pred CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh-ccccCcCCCCccEEEeeccc-CCCCCchhhc
Q 045118 22 RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM-ILSEYKFPPSLTQLSLSNTE-LMEDPMPTLE 99 (221)
Q Consensus 22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L-lp~l~~~~~~L~~L~l~~~~-~~~~~~~~l~ 99 (221)
.+++|+.+.+..+.......+.+.....++|+.|++++....+..... ...+...+.+|+.|++.++. ++......+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367777777776641111124455566777777777641000000000 11122223677777777766 4444444444
Q ss_pred c-CCCCcEEEecCCc-cCCceeeeeCCCCCCcccEEeccccccc
Q 045118 100 K-LPHLEVLKLKQNS-YLERKLACVGCSSFSQLKILHLKSMLWL 141 (221)
Q Consensus 100 ~-l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~L~~L~L~~~~~l 141 (221)
. +++|+.|.+..+. .+...+... ...++.|++|++++|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccc
Confidence 3 6777777764444 233334433 445667777777766644
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.00087 Score=50.60 Aligned_cols=63 Identities=24% Similarity=0.389 Sum_probs=36.8
Q ss_pred CCCCcccEEeccccccccceeeC--CCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 125 SSFSQLKILHLKSMLWLEEWTMG--AGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 125 ~~~~~L~~L~L~~~~~l~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
..+++++.|.+.+|..+.++-.. -+-.|+|+.|++++|+.+++... .+..+++|+.+.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 34555666666666555544211 12356777777777776665532 35666777777776655
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.37 E-value=0.013 Score=46.54 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=51.3
Q ss_pred ChhhcCCCCCccEEEEEecCC--ccccchhHhhccCCCCcEEEeeecCce------e-eehhhccccCcCCCCccEEEee
Q 045118 16 TPDILGRLPNVRTFRISGDLS--YYHSGVSKSLCKLHKLECLKLVNKGKM------W-QLSRMILSEYKFPPSLTQLSLS 86 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~------~-~L~~Llp~l~~~~~~L~~L~l~ 86 (221)
..+.+..|..+.++++++|.. ....++...+.+-.+|+..+++..... . +|.-|+|.+-.+ |.|+.++++
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LS 100 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLS 100 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-Ccceeeecc
Confidence 345566677788888887751 112334445555555655555441000 0 333334444555 677777777
Q ss_pred cccCCCCCch----hhccCCCCcEEEecCCc
Q 045118 87 NTELMEDPMP----TLEKLPHLEVLKLKQNS 113 (221)
Q Consensus 87 ~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 113 (221)
.|.+...-++ .+++-++|++|.+.+|+
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 7665432222 24455667777775554
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.0019 Score=48.77 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=66.8
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCc-eeeeeCCCCCCcccEEeccccccccceee-CCCCCCCcc
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLER-KLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLE 155 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~ 155 (221)
..++.++-+++.+..++.+.+..++.++.|.+.+|...++ .+... -+..++|+.|++++|+.+++-.. .+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3678899999988888888889999999999977665433 23323 33578999999999998887632 356689999
Q ss_pred EEEecCCcccc
Q 045118 156 SLILNPCAYLR 166 (221)
Q Consensus 156 ~L~l~~~~~l~ 166 (221)
.|.+.+.+.+.
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 99888765544
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.35 E-value=0.018 Score=48.29 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=73.3
Q ss_pred CCCccEEEeecccC-CCCCchhhc-cCCCCcEEEecCCc-cCCceeeeeCCCCCCcccEEeccccccccc--eeeCCCCC
Q 045118 77 PPSLTQLSLSNTEL-MEDPMPTLE-KLPHLEVLKLKQNS-YLERKLACVGCSSFSQLKILHLKSMLWLEE--WTMGAGAM 151 (221)
Q Consensus 77 ~~~L~~L~l~~~~~-~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~l 151 (221)
+..||+|+.++|.. .+.....++ +.++|+.|.+..+. ++...+... ..+.+.|+.+++..|..+.+ +......+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCC
Confidence 36778888777643 223333444 57899999998776 344333333 44578899999888763332 23333458
Q ss_pred CCccEEEecCCccccCc-----chhhccCCcCcEEEccCCC
Q 045118 152 PKLESLILNPCAYLRKL-----PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 152 ~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~l~l~~~~ 187 (221)
+.|+.+.+++|..+++. ...-.+...++.+.++.+|
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 99999999999877654 2223556778889999988
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.79 E-value=0.16 Score=35.26 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=13.0
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEe
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKL 109 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 109 (221)
++|+.+.+..+ +...+...+..+++++.+.+
T Consensus 35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred ccccccccccc-ccccceeeeecccccccccc
Confidence 45555555442 33333334555555555555
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.51 E-value=0.26 Score=34.23 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=28.4
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchh
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPT 97 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~ 97 (221)
+.++++|+.+.+... ....-...+.+.++|+.+.+..+ +.. ++ .+... ++++.+.+.. .+...+...
T Consensus 8 F~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-----~~~-i~~~~F~~~-~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 8 FYNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-----LTS-IGDNAFSNC-KSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTT-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-----TSC-E-TTTTTT--TT-EEEEETS-TT-EE-TTT
T ss_pred HhCCCCCCEEEECCC---eeEeChhhccccccccccccccc-----ccc-cceeeeecc-cccccccccc-ccccccccc
Confidence 445555555554432 12222233455555555555441 111 22 23333 4555555543 222222234
Q ss_pred hccCCCCcEEEe
Q 045118 98 LEKLPHLEVLKL 109 (221)
Q Consensus 98 l~~l~~L~~L~l 109 (221)
+..+++++.+.+
T Consensus 77 F~~~~~l~~i~~ 88 (129)
T PF13306_consen 77 FSNCTNLKNIDI 88 (129)
T ss_dssp TTT-TTECEEEE
T ss_pred cccccccccccc
Confidence 444555555555
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.50 E-value=0.051 Score=25.58 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=9.3
Q ss_pred ccEEEecCCccccCcchhh
Q 045118 154 LESLILNPCAYLRKLPEEL 172 (221)
Q Consensus 154 L~~L~l~~~~~l~~~~~~~ 172 (221)
|++|++++| .++.+|..+
T Consensus 2 L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp ESEEEETSS-EESEEGTTT
T ss_pred ccEEECCCC-cCEeCChhh
Confidence 555555554 444555443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.01 E-value=0.029 Score=48.20 Aligned_cols=109 Identities=28% Similarity=0.262 Sum_probs=47.9
Q ss_pred CCccEEEeecccCCCC-C-chhhccCCCCcEEEecCCc--cCCc--eeeeeCCCCCCcccEEeccccccccceeeC--CC
Q 045118 78 PSLTQLSLSNTELMED-P-MPTLEKLPHLEVLKLKQNS--YLER--KLACVGCSSFSQLKILHLKSMLWLEEWTMG--AG 149 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~-~-~~~l~~l~~L~~L~l~~~~--~~~~--~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~--~~ 149 (221)
++|+.|.+.+|..... . ......+++|+.|+++.+. +... ..... ....++|+.+++..+..+.+.... ..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL-LSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh-hhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666655543221 1 1233455666666664421 1100 00111 223455666666555543333111 11
Q ss_pred CCCCccEEEecCCccccCc--chhhccCCcCcEEEccCCC
Q 045118 150 AMPKLESLILNPCAYLRKL--PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~l~l~~~~ 187 (221)
.+++|+.|.+.+|..+++. -.....++.|+++++.+|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2556666665555543322 1123445556666666554
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.32 E-value=0.12 Score=22.70 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=4.3
Q ss_pred CccEEEecCC
Q 045118 153 KLESLILNPC 162 (221)
Q Consensus 153 ~L~~L~l~~~ 162 (221)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3445555543
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.88 E-value=0.58 Score=22.70 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=13.5
Q ss_pred CCccEEEeecccCCCCCchh
Q 045118 78 PSLTQLSLSNTELMEDPMPT 97 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~ 97 (221)
++|+.|++++|.+...+...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56777777777777665443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.88 E-value=0.58 Score=22.70 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=13.5
Q ss_pred CCccEEEeecccCCCCCchh
Q 045118 78 PSLTQLSLSNTELMEDPMPT 97 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~ 97 (221)
++|+.|++++|.+...+...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56777777777777665443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.90 E-value=0.081 Score=25.36 Aligned_cols=15 Identities=40% Similarity=0.755 Sum_probs=7.9
Q ss_pred CCccEEEeecccCCC
Q 045118 78 PSLTQLSLSNTELME 92 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~ 92 (221)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 566666666666543
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.11 E-value=0.61 Score=22.74 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=11.2
Q ss_pred CCCccEEEecCCccccC
Q 045118 151 MPKLESLILNPCAYLRK 167 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~ 167 (221)
+++|++|++++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35677777777766653
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.81 E-value=0.032 Score=43.46 Aligned_cols=90 Identities=16% Similarity=0.058 Sum_probs=62.0
Q ss_pred cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC
Q 045118 70 IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG 147 (221)
Q Consensus 70 lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 147 (221)
+| .+..+ ...+.||++.+++-... .-++.++.+..|+++.|.+.- ++.. .+....+..+.++++. .+..|.+
T Consensus 33 ~~v~ei~~~-kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~--~~~d-~~q~~e~~~~~~~~n~-~~~~p~s 106 (326)
T KOG0473|consen 33 IPVREIASF-KRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKF--LPKD-AKQQRETVNAASHKNN-HSQQPKS 106 (326)
T ss_pred cchhhhhcc-ceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhh--Chhh-HHHHHHHHHHHhhccc-hhhCCcc
Confidence 55 66777 78888888888776443 345667788888887666432 3322 4445566666666665 7788888
Q ss_pred CCCCCCccEEEecCCccc
Q 045118 148 AGAMPKLESLILNPCAYL 165 (221)
Q Consensus 148 ~~~l~~L~~L~l~~~~~l 165 (221)
.+..|++++++..+++..
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 888899988888876543
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.37 E-value=1.8 Score=21.36 Aligned_cols=18 Identities=50% Similarity=0.839 Sum_probs=12.3
Q ss_pred CCCccEEEeecccCCCCC
Q 045118 77 PPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 77 ~~~L~~L~l~~~~~~~~~ 94 (221)
|++|+.|++++|++...+
T Consensus 1 P~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 1 PPSLKELNVSNNQLTSLP 18 (26)
T ss_pred CcccceeecCCCccccCc
Confidence 467777777777776543
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.59 E-value=1.2 Score=38.98 Aligned_cols=80 Identities=28% Similarity=0.291 Sum_probs=48.5
Q ss_pred cCCCCccEEEeecccCCCCC-chhh-ccCCCCcEEEecCCc--cCC-ceeeeeCCCCCCcccEEeccccccccceee---
Q 045118 75 KFPPSLTQLSLSNTELMEDP-MPTL-EKLPHLEVLKLKQNS--YLE-RKLACVGCSSFSQLKILHLKSMLWLEEWTM--- 146 (221)
Q Consensus 75 ~~~~~L~~L~l~~~~~~~~~-~~~l-~~l~~L~~L~l~~~~--~~~-~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~--- 146 (221)
.+ +.+..+++++|++.... ..++ +..|+|+.|+|++|. ... ..+.. -+...|++|.+.+++-.+++..
T Consensus 216 n~-p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K---~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 216 NF-PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK---LKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred CC-cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh---hcCCCHHHeeecCCccccchhhhHH
Confidence 35 77888888888877533 3333 357889999998872 221 11221 1355788888888885444421
Q ss_pred ----CCCCCCCccEEE
Q 045118 147 ----GAGAMPKLESLI 158 (221)
Q Consensus 147 ----~~~~l~~L~~L~ 158 (221)
....||+|..|+
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 113477776654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=68.84 E-value=0.071 Score=41.60 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=46.0
Q ss_pred hhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeC
Q 045118 45 SLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVG 123 (221)
Q Consensus 45 ~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~ 123 (221)
.+....+.+.||++.+. +-. +. .++-+ +.+..|+++.+.+...+ ..++....++.+....|+... .|.+
T Consensus 37 ei~~~kr~tvld~~s~r----~vn-~~~n~s~~-t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~--~p~s- 106 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR----LVN-LGKNFSIL-TRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQ--QPKS- 106 (326)
T ss_pred hhhccceeeeehhhhhH----HHh-hccchHHH-HHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhh--CCcc-
Confidence 34455666666666521 011 11 33334 55666677766655333 455556666666665555444 4544
Q ss_pred CCCCCcccEEeccccc
Q 045118 124 CSSFSQLKILHLKSML 139 (221)
Q Consensus 124 ~~~~~~L~~L~L~~~~ 139 (221)
.+..|.++.+++.+++
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 5566777776665544
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.88 E-value=2.7 Score=20.87 Aligned_cols=16 Identities=50% Similarity=0.779 Sum_probs=10.2
Q ss_pred CCccEEEeecccCCCC
Q 045118 78 PSLTQLSLSNTELMED 93 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~ 93 (221)
++|+.|++++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4567777777766543
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.48 E-value=12 Score=18.28 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=7.3
Q ss_pred CCCcEEEecCCcc
Q 045118 102 PHLEVLKLKQNSY 114 (221)
Q Consensus 102 ~~L~~L~l~~~~~ 114 (221)
.+|+.|+++.|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666655554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.09 E-value=9.6 Score=33.65 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=33.9
Q ss_pred cCCCCcEEEecCCccCC-ceeeeeCCCCCCcccEEeccccccccceeeCC--CCCCCccEEEecCCccccCc
Q 045118 100 KLPHLEVLKLKQNSYLE-RKLACVGCSSFSQLKILHLKSMLWLEEWTMGA--GAMPKLESLILNPCAYLRKL 168 (221)
Q Consensus 100 ~l~~L~~L~l~~~~~~~-~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~--~~l~~L~~L~l~~~~~l~~~ 168 (221)
+.+.+..+.+++|+... +.+... ....|+|+.|+|+++.....-..+. -+...|++|.+.+++..+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssl-sq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSL-SQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHH-HHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 34566666666666432 223323 3346677777777662111111111 12345667777776655544
Done!