Query 045118
Match_columns 221
No_of_seqs 113 out of 1216
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 5.1E-19 1.7E-23 144.2 15.3 174 2-187 104-288 (328)
2 4fcg_A Uncharacterized protein 99.8 6.7E-19 2.3E-23 143.5 15.5 174 1-185 126-310 (328)
3 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-16 3.7E-21 127.6 14.1 164 17-187 49-236 (285)
4 3rfs_A Internalin B, repeat mo 99.7 1.2E-16 4.2E-21 126.7 12.7 173 2-187 41-216 (272)
5 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-16 5.8E-21 126.5 13.6 160 22-187 30-212 (285)
6 1ogq_A PGIP-2, polygalacturona 99.7 4.1E-17 1.4E-21 132.0 10.0 177 1-187 75-279 (313)
7 2o6q_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 123.5 14.3 172 3-187 38-216 (270)
8 1ogq_A PGIP-2, polygalacturona 99.7 1.2E-16 4E-21 129.3 11.3 148 3-161 51-206 (313)
9 1p9a_G Platelet glycoprotein I 99.7 4.6E-16 1.6E-20 124.6 13.0 156 18-187 49-206 (290)
10 3o6n_A APL1; leucine-rich repe 99.7 9.8E-16 3.4E-20 127.3 14.4 56 2-59 69-126 (390)
11 2z66_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 125.3 11.0 156 3-161 29-208 (306)
12 3oja_B Anopheles plasmodium-re 99.7 1.3E-15 4.5E-20 133.3 14.3 57 2-60 75-133 (597)
13 1h6u_A Internalin H; cell adhe 99.7 9.7E-16 3.3E-20 123.7 12.0 166 3-186 42-227 (308)
14 1h6t_A Internalin B; cell adhe 99.6 6.1E-16 2.1E-20 123.9 10.6 166 2-187 46-211 (291)
15 4ezg_A Putative uncharacterize 99.6 5.8E-16 2E-20 117.0 9.9 152 21-187 41-192 (197)
16 3zyi_A Leucine-rich repeat-con 99.6 1.7E-15 5.7E-20 128.3 13.2 157 16-186 91-276 (452)
17 3m19_A Variable lymphocyte rec 99.6 1.7E-15 5.7E-20 118.7 12.1 159 16-187 29-190 (251)
18 2z66_A Variable lymphocyte rec 99.6 1.2E-15 4.2E-20 122.6 11.5 157 23-187 27-210 (306)
19 3zyj_A Leucine-rich repeat-con 99.6 2.2E-15 7.6E-20 127.2 13.5 158 16-187 80-266 (440)
20 3rgz_A Protein brassinosteroid 99.6 1.1E-15 3.6E-20 137.6 12.2 96 16-114 434-550 (768)
21 2z62_A TOLL-like receptor 4, v 99.6 1.7E-15 6E-20 120.0 11.2 178 3-187 29-235 (276)
22 3zyi_A Leucine-rich repeat-con 99.6 3.4E-15 1.2E-19 126.5 13.3 177 2-187 99-301 (452)
23 3zyj_A Leucine-rich repeat-con 99.6 4.1E-15 1.4E-19 125.5 13.6 177 2-187 88-290 (440)
24 3o6n_A APL1; leucine-rich repe 99.6 3.1E-15 1E-19 124.3 12.5 101 79-185 227-327 (390)
25 2xwt_C Thyrotropin receptor; s 99.6 7.9E-15 2.7E-19 113.9 13.9 172 3-187 32-216 (239)
26 1wwl_A Monocyte differentiatio 99.6 1.1E-15 3.8E-20 123.4 9.3 173 1-186 94-284 (312)
27 3rgz_A Protein brassinosteroid 99.6 2E-15 6.7E-20 135.8 11.7 156 23-187 393-549 (768)
28 1h6u_A Internalin H; cell adhe 99.6 4.7E-15 1.6E-19 119.7 12.7 137 20-170 81-234 (308)
29 2id5_A Lingo-1, leucine rich r 99.6 6.2E-15 2.1E-19 125.5 14.1 178 2-186 56-258 (477)
30 3o53_A Protein LRIM1, AGAP0063 99.6 1.2E-15 4.1E-20 123.5 8.7 174 3-187 35-248 (317)
31 2id5_A Lingo-1, leucine rich r 99.6 1.4E-14 4.9E-19 123.2 15.7 106 78-187 224-331 (477)
32 2z63_A TOLL-like receptor 4, v 99.6 2.1E-15 7.3E-20 130.7 10.7 163 21-187 344-529 (570)
33 3vq2_A TLR4, TOLL-like recepto 99.6 1.9E-15 6.5E-20 132.1 10.0 106 78-187 448-556 (606)
34 3oja_A Leucine-rich immune mol 99.6 3E-15 1E-19 128.1 10.9 174 3-187 35-248 (487)
35 2z62_A TOLL-like receptor 4, v 99.6 1.9E-15 6.5E-20 119.8 8.9 129 24-162 28-159 (276)
36 1m9s_A Internalin B; cell inva 99.6 3.4E-15 1.2E-19 130.7 11.3 166 2-187 43-208 (605)
37 3rfs_A Internalin B, repeat mo 99.6 7.6E-15 2.6E-19 116.3 12.0 154 1-164 62-217 (272)
38 3oja_B Anopheles plasmodium-re 99.6 2.8E-15 9.6E-20 131.2 10.4 101 79-185 233-333 (597)
39 2z80_A TOLL-like receptor 2, v 99.6 2.7E-15 9.3E-20 123.0 9.4 157 19-186 71-232 (353)
40 2z7x_B TOLL-like receptor 1, v 99.6 5.5E-15 1.9E-19 127.0 11.6 154 21-187 321-479 (520)
41 2xwt_C Thyrotropin receptor; s 99.6 2.8E-14 9.7E-19 110.7 14.2 150 25-186 32-189 (239)
42 3t6q_A CD180 antigen; protein- 99.6 1E-14 3.6E-19 127.5 13.1 162 20-185 346-532 (606)
43 1p9a_G Platelet glycoprotein I 99.6 1E-14 3.4E-19 116.8 11.9 157 16-187 25-183 (290)
44 2o6q_A Variable lymphocyte rec 99.6 2.2E-14 7.6E-19 113.4 13.6 152 24-187 37-192 (270)
45 4ezg_A Putative uncharacterize 99.6 1E-14 3.4E-19 110.2 10.6 147 2-163 44-192 (197)
46 3vq2_A TLR4, TOLL-like recepto 99.6 8.2E-15 2.8E-19 128.1 11.5 165 20-187 346-532 (606)
47 4fmz_A Internalin; leucine ric 99.6 2.1E-14 7.2E-19 117.2 13.2 173 2-187 132-322 (347)
48 3v47_A TOLL-like receptor 5B a 99.6 6.1E-15 2.1E-19 124.6 10.1 111 72-187 294-406 (455)
49 2ft3_A Biglycan; proteoglycan, 99.6 2.6E-14 8.9E-19 116.2 13.4 171 3-187 55-275 (332)
50 3v47_A TOLL-like receptor 5B a 99.6 1.8E-14 6.3E-19 121.7 12.8 39 19-59 74-112 (455)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.5E-14 5.2E-19 125.6 12.6 153 21-187 350-508 (562)
52 3m19_A Variable lymphocyte rec 99.6 1.5E-14 5.3E-19 113.1 11.3 151 3-164 36-191 (251)
53 4fmz_A Internalin; leucine ric 99.6 2.8E-14 9.5E-19 116.5 12.8 143 2-161 44-186 (347)
54 1xku_A Decorin; proteoglycan, 99.6 2.7E-14 9.4E-19 115.9 12.7 162 16-187 68-251 (330)
55 3t6q_A CD180 antigen; protein- 99.6 1.8E-14 6.1E-19 126.0 12.3 42 16-59 293-334 (606)
56 1xku_A Decorin; proteoglycan, 99.6 1.5E-14 5E-19 117.6 10.9 174 2-187 76-274 (330)
57 4eco_A Uncharacterized protein 99.6 2.2E-15 7.4E-20 132.9 6.1 158 16-186 198-387 (636)
58 1wwl_A Monocyte differentiatio 99.6 6.5E-15 2.2E-19 118.9 8.2 157 22-187 93-264 (312)
59 4ecn_A Leucine-rich repeat pro 99.6 9E-15 3.1E-19 132.6 9.8 158 16-186 481-654 (876)
60 4ecn_A Leucine-rich repeat pro 99.5 6.2E-15 2.1E-19 133.7 7.7 159 16-187 440-630 (876)
61 4eco_A Uncharacterized protein 99.5 1.8E-14 6.2E-19 127.0 10.5 19 16-34 368-387 (636)
62 2z81_A CD282 antigen, TOLL-lik 99.5 1.5E-14 5.1E-19 125.0 9.5 158 18-186 44-206 (549)
63 3o53_A Protein LRIM1, AGAP0063 99.5 1.3E-14 4.4E-19 117.4 8.4 131 45-186 139-272 (317)
64 4glp_A Monocyte differentiatio 99.5 2.2E-14 7.6E-19 115.6 9.7 174 2-187 91-283 (310)
65 2z80_A TOLL-like receptor 2, v 99.5 2.1E-14 7.2E-19 117.7 9.5 154 24-187 52-209 (353)
66 2ast_B S-phase kinase-associat 99.5 2.6E-15 9E-20 122.0 3.5 164 16-186 110-282 (336)
67 2z63_A TOLL-like receptor 4, v 99.5 4.1E-14 1.4E-18 122.6 11.0 175 3-187 305-505 (570)
68 1o6v_A Internalin A; bacterial 99.5 1.5E-13 5.3E-18 116.7 14.3 36 20-59 173-208 (466)
69 3j0a_A TOLL-like receptor 5; m 99.5 3E-14 1E-18 129.3 10.2 176 2-186 24-214 (844)
70 2z81_A CD282 antigen, TOLL-lik 99.5 2.1E-14 7.3E-19 124.0 8.8 156 24-187 26-183 (549)
71 1o6v_A Internalin A; bacterial 99.5 1.7E-13 5.8E-18 116.4 13.5 171 2-187 199-386 (466)
72 1ziw_A TOLL-like receptor 3; i 99.5 1.3E-13 4.6E-18 122.0 12.7 159 16-186 41-205 (680)
73 3bz5_A Internalin-J, INLJ; leu 99.5 2.2E-13 7.6E-18 115.6 13.5 163 2-187 42-223 (457)
74 1ziw_A TOLL-like receptor 3; i 99.5 2.6E-13 9E-18 120.1 14.0 166 16-187 397-595 (680)
75 2ast_B S-phase kinase-associat 99.5 3.8E-15 1.3E-19 121.0 2.0 164 16-187 85-258 (336)
76 2z7x_B TOLL-like receptor 1, v 99.5 2.3E-13 7.9E-18 116.9 13.1 102 3-113 22-126 (520)
77 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 106.5 10.2 129 50-187 40-170 (229)
78 4glp_A Monocyte differentiatio 99.5 4.4E-14 1.5E-18 113.9 7.8 155 23-187 90-262 (310)
79 2o6s_A Variable lymphocyte rec 99.5 9.2E-14 3.2E-18 105.6 8.7 131 23-164 27-160 (208)
80 2ell_A Acidic leucine-rich nuc 99.5 8E-14 2.7E-18 102.4 7.5 130 23-162 23-157 (168)
81 2ft3_A Biglycan; proteoglycan, 99.5 1.1E-13 3.7E-18 112.5 8.4 178 2-187 102-305 (332)
82 3e6j_A Variable lymphocyte rec 99.5 2.3E-13 7.7E-18 105.2 9.6 130 23-164 39-171 (229)
83 1xeu_A Internalin C; cellular 99.5 3.9E-14 1.3E-18 111.8 4.9 146 20-186 37-182 (263)
84 4g8a_A TOLL-like receptor 4; l 99.5 1.3E-13 4.4E-18 120.6 8.6 126 25-161 53-182 (635)
85 1h6t_A Internalin B; cell adhe 99.5 6E-13 2.1E-17 106.4 11.7 145 1-163 67-211 (291)
86 2v9t_B SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 103.8 9.6 109 73-186 52-162 (220)
87 3bz5_A Internalin-J, INLJ; leu 99.4 1.2E-12 4.2E-17 111.0 14.0 166 2-187 64-244 (457)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 4.9E-13 1.7E-17 116.1 11.4 103 2-113 52-157 (562)
89 2v70_A SLIT-2, SLIT homolog 2 99.4 5E-13 1.7E-17 102.6 9.9 110 73-187 53-164 (220)
90 2v9t_B SLIT homolog 2 protein 99.4 5.3E-13 1.8E-17 102.5 9.6 131 24-164 32-164 (220)
91 1xeu_A Internalin C; cellular 99.4 5.3E-13 1.8E-17 105.3 9.5 143 2-163 41-183 (263)
92 2xot_A Amphoterin-induced prot 99.4 3E-13 1E-17 111.3 7.7 153 24-187 39-200 (361)
93 2o6s_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 98.5 10.9 129 49-187 27-159 (208)
94 3j0a_A TOLL-like receptor 5; m 99.4 3.8E-12 1.3E-16 115.6 14.3 93 16-115 282-375 (844)
95 3oja_A Leucine-rich immune mol 99.4 8.2E-13 2.8E-17 113.0 9.4 165 16-187 22-225 (487)
96 2je0_A Acidic leucine-rich nuc 99.4 9.1E-14 3.1E-18 100.1 2.9 106 72-184 37-148 (149)
97 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.3E-17 114.5 10.5 145 1-163 64-208 (605)
98 2ell_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 97.6 7.2 129 47-187 21-158 (168)
99 2ca6_A RAN GTPase-activating p 99.4 9.8E-14 3.3E-18 115.1 3.2 107 78-187 159-285 (386)
100 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-12 6.4E-17 99.4 9.7 131 24-164 32-165 (220)
101 4ay9_X Follicle-stimulating ho 99.4 1.2E-11 4.1E-16 101.3 14.6 113 72-187 99-213 (350)
102 2ca6_A RAN GTPase-activating p 99.3 6.4E-13 2.2E-17 110.1 4.5 107 78-187 187-314 (386)
103 2je0_A Acidic leucine-rich nuc 99.3 1.1E-12 3.7E-17 94.4 5.0 128 23-160 16-148 (149)
104 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.5E-17 96.7 5.5 131 47-188 16-152 (176)
105 3cvr_A Invasion plasmid antige 99.3 1.5E-11 5.2E-16 106.9 12.6 95 78-187 140-241 (571)
106 2xot_A Amphoterin-induced prot 99.3 2.2E-12 7.6E-17 106.1 6.8 138 16-163 55-200 (361)
107 1a9n_A U2A', U2A'; complex (nu 99.3 6.5E-13 2.2E-17 98.4 3.0 131 19-163 14-151 (176)
108 3g06_A SSPH2 (leucine-rich rep 99.3 6.7E-11 2.3E-15 103.8 15.5 76 101-187 220-295 (622)
109 4g8a_A TOLL-like receptor 4; l 99.3 3.1E-11 1.1E-15 105.4 13.4 110 73-187 465-578 (635)
110 1dce_A Protein (RAB geranylger 99.3 3.9E-13 1.3E-17 117.0 -0.5 156 21-187 346-544 (567)
111 1jl5_A Outer protein YOPM; leu 99.2 9.7E-11 3.3E-15 99.3 12.2 32 24-59 131-162 (454)
112 1ds9_A Outer arm dynein; leuci 99.2 9.5E-14 3.3E-18 104.8 -5.9 132 39-182 37-180 (198)
113 4ay9_X Follicle-stimulating ho 99.2 1.2E-10 4.2E-15 95.2 12.2 176 3-185 31-255 (350)
114 1jl5_A Outer protein YOPM; leu 99.2 1.7E-10 5.8E-15 97.8 12.8 10 50-59 131-140 (454)
115 2wfh_A SLIT homolog 2 protein 99.2 5.3E-11 1.8E-15 89.5 8.2 9 176-184 126-134 (193)
116 1w8a_A SLIT protein; signaling 99.2 4.4E-11 1.5E-15 89.8 7.7 87 73-163 50-137 (192)
117 1z7x_W Ribonuclease inhibitor; 99.2 5.3E-12 1.8E-16 106.6 2.8 107 78-187 170-295 (461)
118 4b8c_D Glucose-repressible alc 99.2 2.5E-11 8.5E-16 108.5 7.0 109 72-187 219-327 (727)
119 3cvr_A Invasion plasmid antige 99.2 1.5E-10 5.2E-15 100.6 11.2 132 24-187 80-218 (571)
120 3goz_A Leucine-rich repeat-con 99.2 1.9E-11 6.4E-16 100.6 5.1 40 18-59 44-89 (362)
121 3g06_A SSPH2 (leucine-rich rep 99.2 3.8E-10 1.3E-14 99.1 13.2 52 128-187 221-272 (622)
122 4b8c_D Glucose-repressible alc 99.1 3.7E-11 1.3E-15 107.4 5.6 113 41-164 215-328 (727)
123 1z7x_W Ribonuclease inhibitor; 99.1 5.2E-12 1.8E-16 106.7 -0.1 59 127-187 340-409 (461)
124 1w8a_A SLIT protein; signaling 99.1 3.5E-10 1.2E-14 84.8 9.5 106 78-187 29-137 (192)
125 2wfh_A SLIT homolog 2 protein 99.1 4.4E-10 1.5E-14 84.4 9.9 124 27-164 13-138 (193)
126 1dce_A Protein (RAB geranylger 99.1 1.8E-10 6.2E-15 100.2 8.9 120 51-183 442-567 (567)
127 2o6r_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 83.6 9.1 106 78-187 28-135 (177)
128 2o6r_A Variable lymphocyte rec 99.1 5.4E-10 1.8E-14 82.5 10.0 124 27-164 10-136 (177)
129 3goz_A Leucine-rich repeat-con 99.1 3E-11 1E-15 99.4 3.1 95 16-116 14-123 (362)
130 1ds9_A Outer arm dynein; leuci 99.1 1.7E-12 5.7E-17 98.0 -4.6 129 16-158 40-180 (198)
131 2p1m_B Transport inhibitor res 99.0 1.9E-10 6.5E-15 100.0 3.1 112 21-138 102-221 (594)
132 3ogk_B Coronatine-insensitive 99.0 3.3E-10 1.1E-14 98.5 4.6 36 22-59 110-147 (592)
133 3ogk_B Coronatine-insensitive 98.9 5.2E-10 1.8E-14 97.3 4.3 158 20-184 216-411 (592)
134 2ra8_A Uncharacterized protein 98.9 2.2E-09 7.4E-14 88.3 5.4 170 19-196 134-329 (362)
135 3g39_A Variable lymphocyte rec 98.8 5.2E-09 1.8E-13 76.8 6.5 82 78-162 30-112 (170)
136 2r9u_A Variable lymphocyte rec 98.8 1.9E-08 6.6E-13 74.1 8.8 83 78-163 33-116 (174)
137 3g39_A Variable lymphocyte rec 98.8 2.4E-08 8.2E-13 73.3 8.6 102 79-187 10-113 (170)
138 2r9u_A Variable lymphocyte rec 98.8 1.8E-08 6.1E-13 74.3 7.7 100 27-139 15-116 (174)
139 2p1m_B Transport inhibitor res 98.8 9.1E-10 3.1E-14 95.7 0.8 86 98-187 428-517 (594)
140 3sb4_A Hypothetical leucine ri 98.7 8E-08 2.7E-12 77.8 9.7 99 78-183 226-328 (329)
141 2ifg_A High affinity nerve gro 98.6 5.1E-08 1.7E-12 79.3 7.1 91 16-115 24-116 (347)
142 3un9_A NLR family member X1; l 98.6 1.1E-09 3.7E-14 90.5 -3.6 154 24-187 72-250 (372)
143 2ifg_A High affinity nerve gro 98.6 9.5E-08 3.2E-12 77.7 6.8 92 39-139 21-114 (347)
144 3e4g_A ATP synthase subunit S, 98.6 3.2E-08 1.1E-12 72.8 3.2 88 79-168 62-155 (176)
145 3sb4_A Hypothetical leucine ri 98.6 3.6E-07 1.2E-11 73.8 9.8 79 23-108 48-154 (329)
146 2ra8_A Uncharacterized protein 98.3 1.2E-06 4E-11 72.0 6.1 152 1-163 138-318 (362)
147 3e4g_A ATP synthase subunit S, 98.1 9.1E-07 3.1E-11 65.0 2.6 84 102-187 61-150 (176)
148 4fdw_A Leucine rich hypothetic 98.1 4.5E-05 1.5E-09 63.4 11.7 105 72-185 266-379 (401)
149 4fdw_A Leucine rich hypothetic 97.9 6.6E-05 2.3E-09 62.4 10.4 159 16-187 172-356 (401)
150 3un9_A NLR family member X1; l 97.9 7.5E-07 2.5E-11 73.5 -1.8 136 49-187 71-222 (372)
151 1io0_A Tropomodulin; LRR prote 97.8 2.4E-06 8.1E-11 63.4 0.1 83 78-162 65-161 (185)
152 3rw6_A Nuclear RNA export fact 97.5 5.8E-05 2E-09 59.2 3.4 32 153-184 221-259 (267)
153 1io0_A Tropomodulin; LRR prote 97.5 3.7E-05 1.3E-09 56.8 2.2 122 16-139 28-162 (185)
154 3rw6_A Nuclear RNA export fact 97.2 0.00013 4.4E-09 57.2 2.5 59 78-139 170-231 (267)
155 4fs7_A Uncharacterized protein 97.0 0.0067 2.3E-07 49.9 10.7 143 21-184 227-374 (394)
156 4fs7_A Uncharacterized protein 95.7 0.12 3.9E-06 42.4 10.9 146 18-184 202-351 (394)
157 4h09_A Hypothetical leucine ri 95.5 0.045 1.5E-06 44.5 7.8 103 73-184 236-341 (379)
158 3rfe_A Platelet glycoprotein I 95.4 0.015 5E-07 40.2 3.9 39 76-114 29-67 (130)
159 4h09_A Hypothetical leucine ri 95.1 0.054 1.8E-06 44.0 7.0 127 18-160 211-341 (379)
160 4gt6_A Cell surface protein; l 95.1 0.047 1.6E-06 44.7 6.6 124 44-184 259-386 (394)
161 4gt6_A Cell surface protein; l 94.7 0.094 3.2E-06 42.9 7.6 127 17-161 258-387 (394)
162 3rfe_A Platelet glycoprotein I 87.9 0.98 3.3E-05 30.8 5.1 34 153-187 32-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 86.3 0.4 1.4E-05 35.5 2.5 74 42-116 33-112 (197)
164 1pgv_A TMD-1, tropomodulin TMD 81.3 2.7 9.1E-05 31.0 5.2 117 20-139 37-168 (197)
165 2lz0_A Uncharacterized protein 23.5 43 0.0015 21.3 2.0 37 20-59 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=5.1e-19 Score=144.21 Aligned_cols=174 Identities=20% Similarity=0.293 Sum_probs=122.4
Q ss_pred CCcceeceecCCC-CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-cc------
Q 045118 2 KNLIFISALHPSS-CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SE------ 73 (221)
Q Consensus 2 ~~L~~L~~~~~~~-~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l------ 73 (221)
++|+.|..-.... .+|..++++++|++|++++|. ...+|..+.++++|++|+++++... .. +| .+
T Consensus 104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~---l~~lp~~l~~l~~L~~L~L~~n~~~---~~-~p~~~~~~~~~ 176 (328)
T 4fcg_A 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP---LRALPASIASLNRLRELSIRACPEL---TE-LPEPLASTDAS 176 (328)
T ss_dssp TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC---CCCCCGGGGGCTTCCEEEEEEETTC---CC-CCSCSEEEC-C
T ss_pred CCCCEEECCCCCccchhHHHhccCCCCEEECCCCc---cccCcHHHhcCcCCCEEECCCCCCc---cc-cChhHhhccch
Confidence 3455554332221 255556677777777777764 2366667777777777777662100 11 33 22
Q ss_pred ---CcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCC
Q 045118 74 ---YKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGA 150 (221)
Q Consensus 74 ---~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 150 (221)
..+ ++|++|++++|.+...+ ..++.+++|++|++++|.+.+ ++.. +..+++|+.|++++|.....++..++.
T Consensus 177 ~~~~~l-~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~--l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 177 GEHQGL-VNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSA--LGPA-IHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp CCEEES-TTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCC--CCGG-GGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred hhhccC-CCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCc--Cchh-hccCCCCCEEECcCCcchhhhHHHhcC
Confidence 336 88888888888887544 568888888888888888765 4445 667888888888888766777777888
Q ss_pred CCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 151 MPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+++|++|++++|.....+|..+..+++|++|++.+|+
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 8888888888888888888888888888888888875
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=6.7e-19 Score=143.48 Aligned_cols=174 Identities=22% Similarity=0.276 Sum_probs=145.9
Q ss_pred CCCcceeceecCCC-CChhhcCCCCCccEEEEEecCCccccchhHhhc---------cCCCCcEEEeeecCceeeehhhc
Q 045118 1 LKNLIFISALHPSS-CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLC---------KLHKLECLKLVNKGKMWQLSRMI 70 (221)
Q Consensus 1 L~~L~~L~~~~~~~-~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~L~~Ll 70 (221)
+++|++|..-.... .+|..++++++|++|++++|. ....+|..+. ++++|++|+++++ .+.. +
T Consensus 126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n----~l~~-l 198 (328)
T 4fcg_A 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACP--ELTELPEPLASTDASGEHQGLVNLQSLRLEWT----GIRS-L 198 (328)
T ss_dssp GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET--TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE----CCCC-C
T ss_pred cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC--CccccChhHhhccchhhhccCCCCCEEECcCC----CcCc-c
Confidence 36777877544332 377889999999999999986 5667776655 4999999999985 2333 6
Q ss_pred c-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCC
Q 045118 71 L-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAG 149 (221)
Q Consensus 71 p-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 149 (221)
| .++.+ ++|++|++++|.+...+ ..++.+++|++|++++|.+.+. ++.. +..+++|+.|++++|.....++..++
T Consensus 199 p~~l~~l-~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 199 PASIANL-QNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRN-YPPI-FGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp CGGGGGC-TTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCB-CCCC-TTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred hHhhcCC-CCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhh-hHHH-hcCCCCCCEEECCCCCchhhcchhhh
Confidence 6 78889 99999999999999765 4788999999999998887654 5656 78899999999999987888888888
Q ss_pred CCCCccEEEecCCccccCcchhhccCCcCcEEEccC
Q 045118 150 AMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW 185 (221)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~ 185 (221)
.+++|++|++++|+....+|..++++++++.+++..
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999999999999999999999999999998864
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.1e-16 Score=127.57 Aligned_cols=164 Identities=19% Similarity=0.166 Sum_probs=106.7
Q ss_pred hhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC--cee---------eehhh---------c-c-ccC
Q 045118 17 PDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG--KMW---------QLSRM---------I-L-SEY 74 (221)
Q Consensus 17 ~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~---------~L~~L---------l-p-~l~ 74 (221)
+..++.+++|++|+++++. .....+..+.++++|++|+++++. ..+ +|+.| + | .+.
T Consensus 49 ~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 126 (285)
T 1ozn_A 49 AASFRACRNLTILWLHSNV--LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126 (285)
T ss_dssp TTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred HHHcccCCCCCEEECCCCc--cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh
Confidence 3456777777777777775 434445667777777777776641 110 11211 2 2 455
Q ss_pred cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCC
Q 045118 75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPK 153 (221)
Q Consensus 75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~ 153 (221)
.+ ++|++|++++|.+...+...++.+++|++|++++|.+.. ++...+..+++|+.|+++++. +.++ +..++.+++
T Consensus 127 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 127 GL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGR 202 (285)
T ss_dssp TC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred CC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cCHHHhcCccccCEEECCCCc-ccccCHhHccCccc
Confidence 66 777777777777776665557777777778777776543 222114567788888888777 5555 555667888
Q ss_pred ccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 154 LESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 154 L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
|+.|++++| .+..++. .+..+++|+++++.+++
T Consensus 203 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 203 LMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 888888874 4555553 47788888888888765
No 4
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.2e-16 Score=126.66 Aligned_cols=173 Identities=24% Similarity=0.264 Sum_probs=132.7
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCc
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSL 80 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L 80 (221)
++|++|.........++.++.+++|++|+++++. . ..+ +.+.++++|++|+++++ .+..+.+ .+..+ ++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~--l-~~~-~~l~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK--L-HDI-SALKELTNLTYLILTGN----QLQSLPNGVFDKL-TNL 111 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC--C-CCC-GGGTTCTTCCEEECTTS----CCCCCCTTTTTTC-TTC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCC--C-CCc-hhhcCCCCCCEEECCCC----ccCccChhHhcCC-cCC
Confidence 4566665433333355668899999999999986 3 333 47889999999999984 2333223 57888 999
Q ss_pred cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEe
Q 045118 81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLIL 159 (221)
Q Consensus 81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l 159 (221)
++|++++|.+...+...++.+++|++|++++|.+.. ++...+..+++|+.|++++|. +.+++.. ++.+++|+.|++
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--cCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence 999999999998776678999999999999998765 332214678999999999998 7777544 577999999999
Q ss_pred cCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 160 NPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 160 ~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
++|. +..++. .+..+++|+++++.+++
T Consensus 189 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 189 YQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 9954 555654 47899999999998864
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.7e-16 Score=126.46 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=92.7
Q ss_pred CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-c-----ee----eehhh----------c-c-ccCcCCCC
Q 045118 22 RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-K-----MW----QLSRM----------I-L-SEYKFPPS 79 (221)
Q Consensus 22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-----~~----~L~~L----------l-p-~l~~~~~~ 79 (221)
-.++|++|+++++. .....+..+.++++|++|+++++. . .+ +|+.| + | .+..+ ++
T Consensus 30 ~~~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l-~~ 106 (285)
T 1ozn_A 30 IPAASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL-GR 106 (285)
T ss_dssp CCTTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC-TT
T ss_pred CCCCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC-cC
Confidence 35789999999996 444445678999999999998741 0 01 11111 1 1 33444 55
Q ss_pred ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEE
Q 045118 80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLI 158 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~ 158 (221)
|++|++++|.+...++..++.+++|++|++++|.+.. ++...+..+++|+.|+++++. ++.++.. +..+++|+.|+
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--cCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEE
Confidence 5555555555554444445555666666665555443 111103445666666666665 5555432 55566677777
Q ss_pred ecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 159 LNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 159 l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+++|.-....|..+..+++|++|++.++.
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCc
Confidence 76643222225556667777777776653
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=4.1e-17 Score=131.99 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=112.3
Q ss_pred CCCcceeceec-C--CCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcC
Q 045118 1 LKNLIFISALH-P--SSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKF 76 (221)
Q Consensus 1 L~~L~~L~~~~-~--~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~ 76 (221)
+++|++|..-+ . .+..|..++++++|++|+++++. ....+|..+.++++|++|+++++ .+...+| .+..+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~N----~l~~~~p~~~~~l 148 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--VSGAIPDFLSQIKTLVTLDFSYN----ALSGTLPPSISSL 148 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC--CEEECCGGGGGCTTCCEEECCSS----EEESCCCGGGGGC
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe--eCCcCCHHHhCCCCCCEEeCCCC----ccCCcCChHHhcC
Confidence 46777777542 2 23478889999999999999997 66688889999999999999874 1121133 44444
Q ss_pred CCCccEEEeecccCCCCCchhhccCC-CCcEEEecCC-----------------------ccCCceeeeeCCCCCCcccE
Q 045118 77 PPSLTQLSLSNTELMEDPMPTLEKLP-HLEVLKLKQN-----------------------SYLERKLACVGCSSFSQLKI 132 (221)
Q Consensus 77 ~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~-----------------------~~~~~~l~~~~~~~~~~L~~ 132 (221)
++|++|++++|.+....+..++.++ +|++|++++| .+.+. .+.. +..+++|+.
T Consensus 149 -~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~ 225 (313)
T 1ogq_A 149 -PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD-ASVL-FGSDKNTQK 225 (313)
T ss_dssp -TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEEC-CGGG-CCTTSCCSE
T ss_pred -CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCc-CCHH-HhcCCCCCE
Confidence 5555555555554422223444444 4555555444 43321 2223 455677777
Q ss_pred EeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 133 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 133 L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
|+++++. +......+..+++|++|++++|.-...+|..+..+++|++|++.++.
T Consensus 226 L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 226 IHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 7777766 44443345667788888888755444677778888888888887764
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=4e-16 Score=123.54 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=130.1
Q ss_pred CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCceeeehhhcc--ccCcCC
Q 045118 3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFP 77 (221)
Q Consensus 3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~ 77 (221)
++++|........ .+..++++++|++|+++++. . ..++ ..+.++++|++|+++++ .+.. +| .+..+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l-~~i~~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~~~l- 108 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--L-QTLPAGIFKELKNLETLWVTDN----KLQA-LPIGVFDQL- 108 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--C-SCCCTTTTSSCTTCCEEECCSS----CCCC-CCTTTTTTC-
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--c-CeeChhhhcCCCCCCEEECCCC----cCCc-CCHhHcccc-
Confidence 4566653332222 33468889999999998885 3 3444 44688999999999874 2233 34 56778
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES 156 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~ 156 (221)
++|++|++++|.+...+...++.+++|++|++++|.+.. ++...+..+++|+.|+++++. +..++.. +..+++|++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKT 185 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCE
Confidence 999999999999988877778899999999999998765 332115678999999999987 7777543 677899999
Q ss_pred EEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 157 LILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 157 L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
|++++| .+..+|. .+..+++|+.|++.+++
T Consensus 186 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 999995 5667765 47889999999998865
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=1.2e-16 Score=129.33 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=107.2
Q ss_pred CcceeceecC--CC--CChhhcCCCCCccEEEEEe-cCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcC
Q 045118 3 NLIFISALHP--SS--CTPDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKF 76 (221)
Q Consensus 3 ~L~~L~~~~~--~~--~~~~~l~~l~~Lr~L~l~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~ 76 (221)
++++|..-+. .+ ..|..++++++|++|++++ +. ..+.+|..++++++|++|+++++ .+...+| .+..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~--l~~~~p~~l~~l~~L~~L~Ls~n----~l~~~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYITHT----NVSGAIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT--EESCCCGGGGGCTTCSEEEEEEE----CCEEECCGGGGGC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc--ccccCChhHhcCCCCCEEECcCC----eeCCcCCHHHhCC
Confidence 4566654333 23 4678899999999999995 65 66688999999999999999984 2221256 78889
Q ss_pred CCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCC-cccEEecccccccc-ceeeCCCCCCCc
Q 045118 77 PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFS-QLKILHLKSMLWLE-EWTMGAGAMPKL 154 (221)
Q Consensus 77 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~-~L~~L~L~~~~~l~-~~~~~~~~l~~L 154 (221)
++|++|++++|.+....+..++.+++|++|++++|.+.+. ++.. +..++ .|+.|+++++. +. .++..++.++ |
T Consensus 125 -~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~-l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 125 -KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDS-YGSFSKLFTSMTISRNR-LTGKIPPTFANLN-L 199 (313)
T ss_dssp -TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGG-GGCCCTTCCEEECCSSE-EEEECCGGGGGCC-C
T ss_pred -CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHH-HhhhhhcCcEEECcCCe-eeccCChHHhCCc-c
Confidence 9999999999999866667899999999999999887532 4444 55666 78888888776 33 2233333333 4
Q ss_pred cEEEecC
Q 045118 155 ESLILNP 161 (221)
Q Consensus 155 ~~L~l~~ 161 (221)
+.|++++
T Consensus 200 ~~L~Ls~ 206 (313)
T 1ogq_A 200 AFVDLSR 206 (313)
T ss_dssp SEEECCS
T ss_pred cEEECcC
Confidence 4444444
No 9
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=4.6e-16 Score=124.57 Aligned_cols=156 Identities=23% Similarity=0.236 Sum_probs=112.9
Q ss_pred hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCch
Q 045118 18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMP 96 (221)
Q Consensus 18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~ 96 (221)
..++.+++|++|+++++. ...++.. ..+++|++|+++++ .+.. +| .+..+ ++|+.|++++|.+...++.
T Consensus 49 ~~~~~l~~L~~L~L~~n~---l~~~~~~-~~l~~L~~L~Ls~N----~l~~-l~~~~~~l-~~L~~L~l~~N~l~~l~~~ 118 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAE---LTKLQVD-GTLPVLGTLDLSHN----QLQS-LPLLGQTL-PALTVLDVSFNRLTSLPLG 118 (290)
T ss_dssp GGGTTCTTCCEEECTTSC---CCEEECC-SCCTTCCEEECCSS----CCSS-CCCCTTTC-TTCCEEECCSSCCCCCCSS
T ss_pred HHhhcCCCCCEEECCCCc---cCcccCC-CCCCcCCEEECCCC----cCCc-CchhhccC-CCCCEEECCCCcCcccCHH
Confidence 345555555555555553 1222221 44555555555543 2233 56 56778 8999999999999988777
Q ss_pred hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcchhhccC
Q 045118 97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEELWCI 175 (221)
Q Consensus 97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~l 175 (221)
.++.+++|++|++++|.+.. ++..-+..+++|+.|+++++. ++.++.. +..+++|+.|++++ +.+..+|..+...
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKT--LPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGS 194 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred HHcCCCCCCEEECCCCCCCc--cChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCC-CcCCccChhhccc
Confidence 88999999999999988765 332214578899999999988 8888654 46689999999998 5678999988899
Q ss_pred CcCcEEEccCCC
Q 045118 176 KSLCKLELHWPQ 187 (221)
Q Consensus 176 ~~L~~l~l~~~~ 187 (221)
++|+.+++.+++
T Consensus 195 ~~L~~l~L~~Np 206 (290)
T 1p9a_G 195 HLLPFAFLHGNP 206 (290)
T ss_dssp CCCSEEECCSCC
T ss_pred ccCCeEEeCCCC
Confidence 999999999865
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=9.8e-16 Score=127.26 Aligned_cols=56 Identities=5% Similarity=-0.022 Sum_probs=31.9
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
++|++|..-..... .+..++.+++|++|+++++. .....+..++++++|++|++++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCC
Confidence 45555543222211 33456677777777777764 3334445566777777777766
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=4.2e-16 Score=125.35 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=79.7
Q ss_pred CcceeceecCCCC-Chh-hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce-----e----eehhh--
Q 045118 3 NLIFISALHPSSC-TPD-ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM-----W----QLSRM-- 69 (221)
Q Consensus 3 ~L~~L~~~~~~~~-~~~-~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~----~L~~L-- 69 (221)
+|++|..-..... ++. .++++++|++|+++++........+..+.++++|++|+++++.-. + +|+.|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 4555553322222 333 367788888888887752222333555566777777777653100 0 12222
Q ss_pred -------cc---ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118 70 -------IL---SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 70 -------lp---~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
++ .+..+ ++|++|++++|.+.......++.+++|++|++++|.+.+...+.. +..+++|+.|++++|.
T Consensus 109 ~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ 186 (306)
T ss_dssp TTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC
T ss_pred CCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEECCCCC
Confidence 11 34445 666666666666554444455556666666666555443223333 4455555555555554
Q ss_pred cccce-eeCCCCCCCccEEEecC
Q 045118 140 WLEEW-TMGAGAMPKLESLILNP 161 (221)
Q Consensus 140 ~l~~~-~~~~~~l~~L~~L~l~~ 161 (221)
+.++ +..++.+++|++|++++
T Consensus 187 -l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 187 -LEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp -CCEECTTTTTTCTTCCEEECTT
T ss_pred -cCCcCHHHhcCCCCCCEEECCC
Confidence 4433 22333444455555544
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.3e-15 Score=133.31 Aligned_cols=57 Identities=5% Similarity=-0.017 Sum_probs=32.2
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeec
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNK 60 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 60 (221)
++|+.|...+.... .+..++.+++|++|+++++. .....+..++++++|++|+++++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCC
Confidence 44555543222211 33456777777777777765 43444455667777777777663
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=9.7e-16 Score=123.68 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=81.4
Q ss_pred CcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccE
Q 045118 3 NLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQ 82 (221)
Q Consensus 3 ~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~ 82 (221)
+|++|...+......+.++.+++|++|+++++. ...++. +.++++|++|+++++. +.. ++.+..+ ++|++
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~---i~~~~~-~~~l~~L~~L~L~~n~----l~~-~~~~~~l-~~L~~ 111 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ---ITDLAP-LKNLTKITELELSGNP----LKN-VSAIAGL-QSIKT 111 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCCSCCEEECCSCC----CSC-CGGGTTC-TTCCE
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCc---CCCChh-HccCCCCCEEEccCCc----CCC-chhhcCC-CCCCE
Confidence 455555333322233456777888888887774 333444 7777777777777631 121 2334444 44455
Q ss_pred EEeecccCCCCCc--------------------hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccc
Q 045118 83 LSLSNTELMEDPM--------------------PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLE 142 (221)
Q Consensus 83 L~l~~~~~~~~~~--------------------~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~ 142 (221)
|++++|.+...+. ..++.+++|++|++++|.+.. ++ . +..+++|+.|++++|. +.
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~-~-l~~l~~L~~L~l~~n~-l~ 186 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LT-P-LANLSKLTTLKADDNK-IS 186 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CG-G-GTTCTTCCEEECCSSC-CC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Ch-h-hcCCCCCCEEECCCCc-cC
Confidence 5554444443210 124444455555554444332 11 1 2344555555555544 44
Q ss_pred ceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCC
Q 045118 143 EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWP 186 (221)
Q Consensus 143 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~ 186 (221)
+++. +..+++|++|++++| .+..++ .+..+++|++|++.++
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEE
T ss_pred cChh-hcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCC
Confidence 3332 334555555555553 333333 2455555555555543
No 14
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=6.1e-16 Score=123.89 Aligned_cols=166 Identities=25% Similarity=0.300 Sum_probs=128.1
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT 81 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~ 81 (221)
++|+.|..........+.++.+++|+.|+++++. ...++. +.++++|++|+++++ .+.. +|.+..+ ++|+
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~---l~~~~~-l~~l~~L~~L~l~~n----~l~~-~~~l~~l-~~L~ 115 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LANLKNLGWLFLDEN----KVKD-LSSLKDL-KKLK 115 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSS----CCCC-GGGGTTC-TTCC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCc---cCCCcc-cccCCCCCEEECCCC----cCCC-ChhhccC-CCCC
Confidence 3455555333332344568889999999999995 334444 889999999999985 2233 5678888 9999
Q ss_pred EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118 82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP 161 (221)
Q Consensus 82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 161 (221)
+|++++|.+... +.++.+++|+.|++++|.+.. ++ . +..+++|+.|++++|. +.+++. +..+++|+.|++++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~-~-l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--IT-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CG-G-GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCS
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc--ch-h-hccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCC
Confidence 999999998764 578899999999999888766 32 3 6678999999999987 777754 77799999999998
Q ss_pred CccccCcchhhccCCcCcEEEccCCC
Q 045118 162 CAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 162 ~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
| .++.++. +..+++|+.|++.+++
T Consensus 188 N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 188 N-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp S-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred C-cCCCChh-hccCCCCCEEECcCCc
Confidence 4 5677764 8889999999998764
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.8e-16 Score=117.03 Aligned_cols=152 Identities=12% Similarity=0.155 Sum_probs=122.8
Q ss_pred CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhcc
Q 045118 21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEK 100 (221)
Q Consensus 21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 100 (221)
+++++|+.|+++++. ...++ .+..+++|++|+++++. +.. ++.+..+ ++|++|++++|.+....+..++.
T Consensus 41 ~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~l~~n~----~~~-~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANIN---VTDLT-GIEYAHNIKDLTINNIH----ATN-YNPISGL-SNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSC---CSCCT-TGGGCTTCSEEEEESCC----CSC-CGGGTTC-TTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCC---ccChH-HHhcCCCCCEEEccCCC----CCc-chhhhcC-CCCCEEEeECCccCcccChhhcC
Confidence 567899999999985 44556 68899999999999851 122 4578888 99999999999988655668889
Q ss_pred CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcE
Q 045118 101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCK 180 (221)
Q Consensus 101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 180 (221)
+++|++|++++|.+... .+.. +..+++|+.|++++|..+.+++ .+..+++|+.|++++| .+..++ .+..+++|++
T Consensus 111 l~~L~~L~Ls~n~i~~~-~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDS-ILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQ 185 (197)
T ss_dssp CTTCCEEECCSSBCBGG-GHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCE
T ss_pred CCCCCEEEecCCccCcH-hHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCE
Confidence 99999999999987653 2334 6689999999999987577776 5677999999999984 566776 7889999999
Q ss_pred EEccCCC
Q 045118 181 LELHWPQ 187 (221)
Q Consensus 181 l~l~~~~ 187 (221)
|++.+++
T Consensus 186 L~l~~N~ 192 (197)
T 4ezg_A 186 LYAFSQT 192 (197)
T ss_dssp EEECBC-
T ss_pred EEeeCcc
Confidence 9999875
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.7e-15 Score=128.34 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=85.0
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMED 93 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~ 93 (221)
.+..++++++|++|+++++. .....+..+.++++|++|+++++ .+.. +| .+..+ ++|++|++++|.+...
T Consensus 91 ~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n----~l~~-~~~~~~~~l-~~L~~L~L~~N~l~~~ 162 (452)
T 3zyi_A 91 QADTFRHLHHLEVLQLGRNS--IRQIEVGAFNGLASLNTLELFDN----WLTV-IPSGAFEYL-SKLRELWLRNNPIESI 162 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS----CCSB-CCTTTSSSC-TTCCEEECCSCCCCEE
T ss_pred CHHHcCCCCCCCEEECCCCc--cCCcChhhccCcccCCEEECCCC----cCCc-cChhhhccc-CCCCEEECCCCCccee
Confidence 44567777888888887775 44444566777777777777764 1222 22 34445 5555555555555443
Q ss_pred CchhhccC-------------------------CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeC
Q 045118 94 PMPTLEKL-------------------------PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMG 147 (221)
Q Consensus 94 ~~~~l~~l-------------------------~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~ 147 (221)
+...+..+ ++|++|++++|.+.. ++ . ...+++|+.|++++|. +.++ +..
T Consensus 163 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~ 237 (452)
T 3zyi_A 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-N-LTPLVGLEELEMSGNH-FPEIRPGS 237 (452)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-C-CTTCTTCCEEECTTSC-CSEECGGG
T ss_pred CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-c-ccccccccEEECcCCc-CcccCccc
Confidence 33334444 444444444444332 22 1 3345555555555555 4444 334
Q ss_pred CCCCCCccEEEecCCccccCc-chhhccCCcCcEEEccCC
Q 045118 148 AGAMPKLESLILNPCAYLRKL-PEELWCIKSLCKLELHWP 186 (221)
Q Consensus 148 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~ 186 (221)
+..+++|+.|++++|. +..+ +..+..+++|++|++.++
T Consensus 238 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp GTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred ccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC
Confidence 4555666666666533 3333 334566666666666654
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.7e-15 Score=118.67 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=126.6
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
+|..+. ++++.|+++++. .....+..+.++++|++|+++++ .++.+.+ .+..+ ++|++|++++|.+...+
T Consensus 29 ~p~~~~--~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 29 VPSGIP--ADTEKLDLQSTG--LATLSDATFRGLTKLTWLNLDYN----QLQTLSAGVFDDL-TELGTLGLANNQLASLP 99 (251)
T ss_dssp CCSCCC--TTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTC-TTCCEEECTTSCCCCCC
T ss_pred cCCCCC--CCCCEEEccCCC--cCccCHhHhcCcccCCEEECCCC----cCCccCHhHhccC-CcCCEEECCCCcccccC
Confidence 444443 689999999996 55555667899999999999984 2333233 57888 99999999999999887
Q ss_pred chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCccccCcch-hh
Q 045118 95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPE-EL 172 (221)
Q Consensus 95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~ 172 (221)
...++.+++|++|++++|.+.. ++...+..+++|+.|+++++. ++.++. .++.+++|++|++++| .+..++. .+
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 175 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAF 175 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred hhHhcccCCCCEEEcCCCcCCC--cChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHH
Confidence 7788999999999999998765 332214678999999999997 887865 4778999999999994 5666654 67
Q ss_pred ccCCcCcEEEccCCC
Q 045118 173 WCIKSLCKLELHWPQ 187 (221)
Q Consensus 173 ~~l~~L~~l~l~~~~ 187 (221)
..+++|+++++.+++
T Consensus 176 ~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 176 DRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred hCCCCCCEEEeeCCc
Confidence 889999999999865
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=1.2e-15 Score=122.59 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=117.1
Q ss_pred CCCccEEEEEecCCccccchhH-hhccCCCCcEEEeeecCce------e------eehhh---------cc-ccCcCCCC
Q 045118 23 LPNVRTFRISGDLSYYHSGVSK-SLCKLHKLECLKLVNKGKM------W------QLSRM---------IL-SEYKFPPS 79 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~------~------~L~~L---------lp-~l~~~~~~ 79 (221)
.++|++|+++++. ...++. .+.++++|++|+++++.-. . +|+.| +| .+..+ ++
T Consensus 27 ~~~l~~L~L~~n~---l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l-~~ 102 (306)
T 2z66_A 27 PSSATRLELESNK---LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQ 102 (306)
T ss_dssp CTTCCEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC-TT
T ss_pred CCCCCEEECCCCc---cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC-CC
Confidence 3689999999995 345554 4789999999999874211 0 33333 44 56677 88
Q ss_pred ccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc--eeeCCCCCCCccE
Q 045118 80 LTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE--WTMGAGAMPKLES 156 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~ 156 (221)
|++|++++|.+...+. ..+..+++|++|++++|.+... .+.. +..+++|+.|+++++. +.+ .+..++.+++|+.
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGI-FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTT-TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhh-cccCcCCCEEECCCCc-cccccchhHHhhCcCCCE
Confidence 9999999988876553 4678889999999988876432 2333 5678899999999887 554 5677888999999
Q ss_pred EEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118 157 LILNPCAYLRKL-PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 157 L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~ 187 (221)
|++++|. +..+ |..+..+++|++|++.++.
T Consensus 180 L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 180 LDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp EECTTSC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence 9999854 4554 5678888999999998765
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=127.18 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=86.3
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMED 93 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~ 93 (221)
.+..++++++|++|+++++. .....+..+.++++|++|+++++ ++.. +| .+..+ ++|+.|++++|.+...
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n----~l~~-~~~~~~~~l-~~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNH--IRTIEIGAFNGLANLNTLELFDN----RLTT-IPNGAFVYL-SKLKELWLRNNPIESI 151 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSC--CCEECGGGGTTCSSCCEEECCSS----CCSS-CCTTTSCSC-SSCCEEECCSCCCCEE
T ss_pred CHHHhhCCCCCCEEECCCCc--CCccChhhccCCccCCEEECCCC----cCCe-eCHhHhhcc-ccCceeeCCCCccccc
Confidence 34557777777777777775 44444466777777777777763 1122 22 34444 4555555555544433
Q ss_pred Cch-------------------------hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeC
Q 045118 94 PMP-------------------------TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMG 147 (221)
Q Consensus 94 ~~~-------------------------~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~ 147 (221)
+.. .++.+++|++|++++|.+.. ++ . +..+++|+.|++++|. +..+ +..
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~ 226 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-N-LTPLIKLDELDLSGNH-LSAIRPGS 226 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-C-CTTCSSCCEEECTTSC-CCEECTTT
T ss_pred CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-c-cCCCcccCEEECCCCc-cCccChhh
Confidence 333 34445555555555544432 22 2 3445566666666554 4444 334
Q ss_pred CCCCCCccEEEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118 148 AGAMPKLESLILNPCAYLRKL-PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 148 ~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~ 187 (221)
+..+++|++|++++| .+..+ +..+..+++|++|++.++.
T Consensus 227 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp TTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC
T ss_pred hccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC
Confidence 555666666666663 33333 3345667777777776653
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=1.1e-15 Score=137.57 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=49.4
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce------e----eehhh----------cc-ccC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM------W----QLSRM----------IL-SEY 74 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~----~L~~L----------lp-~l~ 74 (221)
.|..++++++|+.|++++|. ..+.+|..+..+++|++|+++++.-. + +|+.+ +| +++
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNM--LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ccHHHhcCCCCCEEECCCCc--ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 44445555555555555554 33344444445555555555442000 0 11111 44 566
Q ss_pred cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCcc
Q 045118 75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY 114 (221)
Q Consensus 75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 114 (221)
.+ ++|+.|++++|.+....+..++.+++|++|++++|.+
T Consensus 512 ~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 512 RL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 66 6666666666666544445566666666666666544
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.7e-15 Score=120.04 Aligned_cols=178 Identities=17% Similarity=0.169 Sum_probs=97.4
Q ss_pred CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e-----e----eehhh-
Q 045118 3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M-----W----QLSRM- 69 (221)
Q Consensus 3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~-----~----~L~~L- 69 (221)
+|++|..-..... .+..++++++|++|+++++. .....+..+.++++|++|+++++.- . + +|+.+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc--CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 3555553222222 33467778888888888775 3344445677778888888876310 0 0 11111
Q ss_pred --------cc--ccCcCCCCccEEEeecccCCCCC-chhhccCCCCcEEEecCCccCCceeeeeCCCCCCccc----EEe
Q 045118 70 --------IL--SEYKFPPSLTQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLK----ILH 134 (221)
Q Consensus 70 --------lp--~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~----~L~ 134 (221)
++ .++.+ ++|++|++++|.+.... +..++.+++|++|++++|.+.. ++...+..+++|+ .|+
T Consensus 107 l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 107 AVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp CTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--ECGGGGHHHHTCTTCCEEEE
T ss_pred CCCCCccccCchhcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CCHHHhhhhhhccccceeee
Confidence 11 24444 55555555555554422 2345555555555555554432 1110011222233 455
Q ss_pred ccccccccceeeCCCCCCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118 135 LKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 187 (221)
Q Consensus 135 L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~ 187 (221)
++++. +..++.......+|+.|++++| .++.+|.. +..+++|+++++.+++
T Consensus 184 ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 184 LSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCCCc-ccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 55554 4555444444558999999985 47777654 5889999999999654
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=3.4e-15 Score=126.47 Aligned_cols=177 Identities=22% Similarity=0.197 Sum_probs=127.8
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-ce-----e----eehhh
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-KM-----W----QLSRM 69 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-----~----~L~~L 69 (221)
++|+.|..-..... .+..++++++|++|++++|. .....+..+.++++|++|+++++. +. + +|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW--LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc--CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 45556553322222 44667888888888888885 333334457778888888887631 00 1 22222
Q ss_pred ----------cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118 70 ----------IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS 137 (221)
Q Consensus 70 ----------lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~ 137 (221)
++ .+..+ ++|+.|++++|.+...+ .+..+++|+.|++++|.+... .+.. +..+++|+.|++++
T Consensus 177 ~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEI-RPGS-FHGLSSLKKLWVMN 251 (452)
T ss_dssp ECCCCTTCCEECTTTTTTC-TTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEE-CGGG-GTTCTTCCEEECTT
T ss_pred eCCCCCCccccChhhccCC-CCCCEEECCCCcccccc--cccccccccEEECcCCcCccc-Cccc-ccCccCCCEEEeCC
Confidence 33 46677 89999999999988653 678899999999999987652 2434 77899999999999
Q ss_pred cccccce-eeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 138 MLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 138 ~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
+. +..+ +..+..+++|+.|++++| .+..+|. .+..+++|++|++.+++
T Consensus 252 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 252 SQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred Cc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 88 7766 445778999999999995 6677765 46789999999999876
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=125.51 Aligned_cols=177 Identities=20% Similarity=0.196 Sum_probs=127.4
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-c-----ee----eehhh
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-K-----MW----QLSRM 69 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-----~~----~L~~L 69 (221)
++|+.|..-..... .+..++++++|++|++++|. .....+..+.++++|++|+++++. + .+ +|+.|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR--LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC--CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCc--CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 45555553322222 44668888888888888885 333333467778888888887641 0 01 22222
Q ss_pred ----------cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118 70 ----------IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS 137 (221)
Q Consensus 70 ----------lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~ 137 (221)
++ .+..+ ++|+.|++++|.+...+ .+..+++|+.|++++|.+... .+.. +..+++|+.|++.+
T Consensus 166 ~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAI-RPGS-FQGLMHLQKLWMIQ 240 (440)
T ss_dssp ECCCCTTCCEECTTTTTTC-SSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEE-CTTT-TTTCTTCCEEECTT
T ss_pred CCCCCCCcceeCcchhhcc-cccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCcc-Chhh-hccCccCCEEECCC
Confidence 23 46777 89999999999998654 678899999999999987652 2334 67899999999999
Q ss_pred cccccce-eeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 138 MLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 138 ~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
+. +..+ +..+..+++|+.|++++| .++.+|. .+..+++|++|++.+++
T Consensus 241 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 SQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred Cc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 88 7777 345677999999999994 6667764 46889999999999876
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=3.1e-15 Score=124.27 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=54.5
Q ss_pred CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEE
Q 045118 79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLI 158 (221)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~ 158 (221)
+|+.|++++|.+... ..++.+++|++|++++|.+... .+.. +..+++|+.|+++++. ++.++...+.+++|+.|+
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI-MYHP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLD 301 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-ESGG-GTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEE
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc-ChhH-ccccccCCEEECCCCc-CcccCcccCCCCCCCEEE
Confidence 444555555544432 3455666777777766655432 2223 4556666666666665 555655555566666666
Q ss_pred ecCCccccCcchhhccCCcCcEEEccC
Q 045118 159 LNPCAYLRKLPEELWCIKSLCKLELHW 185 (221)
Q Consensus 159 l~~~~~l~~~~~~~~~l~~L~~l~l~~ 185 (221)
+++| .+..+|..+..+++|++|++.+
T Consensus 302 L~~n-~l~~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 302 LSHN-HLLHVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred CCCC-cceecCccccccCcCCEEECCC
Confidence 6663 3445554444444444444443
No 25
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=7.9e-15 Score=113.90 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=125.5
Q ss_pred CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeee-cCceeeehhhcc--ccCcC
Q 045118 3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVN-KGKMWQLSRMIL--SEYKF 76 (221)
Q Consensus 3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~~~~L~~Llp--~l~~~ 76 (221)
+|++|........ .+..++++++|++|+++++. ....++ ..+.++++|++|++++ + .++. +| .+..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--~l~~i~~~~f~~l~~L~~L~l~~~n----~l~~-i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQQLESHSFYNLSKVTHIEIRNTR----NLTY-IDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS--SCCEECTTTEESCTTCCEEEEEEET----TCCE-ECTTSEECC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC--CcceeCHhHcCCCcCCcEEECCCCC----CeeE-cCHHHhCCC
Confidence 5666664443333 34468899999999999983 244444 4788999999999986 4 2333 34 67778
Q ss_pred CCCccEEEeecccCCCCCchhhccCCCCc---EEEecCC-ccCCceeeeeCCCCCCccc-EEeccccccccceeeCCCCC
Q 045118 77 PPSLTQLSLSNTELMEDPMPTLEKLPHLE---VLKLKQN-SYLERKLACVGCSSFSQLK-ILHLKSMLWLEEWTMGAGAM 151 (221)
Q Consensus 77 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~l~~~~~~~~~~L~-~L~L~~~~~l~~~~~~~~~l 151 (221)
++|++|++++|.+...+ .++.+++|+ +|++++| .+.. ++...+..+++|+ .|+++++. ++.++......
T Consensus 105 -~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~--i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~ 178 (239)
T 2xwt_C 105 -PLLKFLGIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTS--IPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG 178 (239)
T ss_dssp -TTCCEEEEEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCE--ECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred -CCCCEEeCCCCCCcccc--ccccccccccccEEECCCCcchhh--cCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence 89999999999988754 377788887 9999888 6543 3321155688899 99998887 77776554444
Q ss_pred CCccEEEecCCccccCcch-hhccC-CcCcEEEccCCC
Q 045118 152 PKLESLILNPCAYLRKLPE-ELWCI-KSLCKLELHWPQ 187 (221)
Q Consensus 152 ~~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~l~l~~~~ 187 (221)
++|++|++++|..++.+|. .+..+ ++|+++++.++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 7899999998655777754 47778 899999998764
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.1e-15 Score=123.43 Aligned_cols=173 Identities=21% Similarity=0.276 Sum_probs=90.9
Q ss_pred CCCcceeceecCC--CCChhhc--CCCCCccEEEEEecCCccccchhHhhccC-----CCCcEEEeeecCceeeehhhcc
Q 045118 1 LKNLIFISALHPS--SCTPDIL--GRLPNVRTFRISGDLSYYHSGVSKSLCKL-----HKLECLKLVNKGKMWQLSRMIL 71 (221)
Q Consensus 1 L~~L~~L~~~~~~--~~~~~~l--~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~L~~Llp 71 (221)
+++|++|..-... +..|..+ +.+++|++|+++++. .... |..++.+ ++|++|+++++ ++..+.|
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~-~~~~~~l~~~~~~~L~~L~L~~N----~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--WATR-DAWLAELQQWLKPGLKVLSIAQA----HSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB--CSSS-SSHHHHHHTTCCTTCCEEEEESC----SCCCCCT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC--Ccch-hHHHHHHHHhhcCCCcEEEeeCC----CCccchH
Confidence 3567777644332 3355555 888999999999885 3333 6666666 88888888874 1222122
Q ss_pred -ccCcCCCCccEEEeecccCCCC--Cchhh--ccCCCCcEEEecCCccCCc-eee-eeCCCCCCcccEEeccccccccce
Q 045118 72 -SEYKFPPSLTQLSLSNTELMED--PMPTL--EKLPHLEVLKLKQNSYLER-KLA-CVGCSSFSQLKILHLKSMLWLEEW 144 (221)
Q Consensus 72 -~l~~~~~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~~-~l~-~~~~~~~~~L~~L~L~~~~~l~~~ 144 (221)
.++.+ ++|++|++++|.+... .+..+ +.+++|++|++++|.+... .++ .. ...+++|+.|++++|. +.+.
T Consensus 167 ~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~ 243 (312)
T 1wwl_A 167 EQVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNS-LRDA 243 (312)
T ss_dssp TTCCCC-SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSC-CCSS
T ss_pred HHhccC-CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCc-CCcc
Confidence 45555 5666666666654321 01122 4555666666655554421 011 01 1234555555555555 3332
Q ss_pred e--eCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCC
Q 045118 145 T--MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWP 186 (221)
Q Consensus 145 ~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~ 186 (221)
+ .....+++|++|++++ +.++.+|..+. ++|++|++.++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp CCCSCCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS
T ss_pred cchhhhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC
Confidence 2 1222345555555555 23445554443 55555555554
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=2e-15 Score=135.80 Aligned_cols=156 Identities=21% Similarity=0.183 Sum_probs=121.2
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
+++|++|++++|. ..+.+|..++++++|++|+++++ ++...+| .++.+ ++|+.|++++|.+....+..++.+
T Consensus 393 ~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N----~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 393 KNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSFN----YLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCSS----EEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCCccEEECCCCc--cccccCHHHhcCCCCCEEECcCC----cccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCC
Confidence 5566666666665 44566777778888888888764 2222255 77888 899999999999887666788889
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEE
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKL 181 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l 181 (221)
++|++|++++|.+.+. .+.. +..+++|+.|++++|.-...+|..++.+++|+.|++++|.....+|..++.+++|+++
T Consensus 466 ~~L~~L~L~~N~l~~~-~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 466 KTLETLILDFNDLTGE-IPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp TTCCEEECCSSCCCSC-CCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCceEEEecCCcccCc-CCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 9999999988887654 5555 6778999999999988333667778889999999999976656788889999999999
Q ss_pred EccCCC
Q 045118 182 ELHWPQ 187 (221)
Q Consensus 182 ~l~~~~ 187 (221)
++.+++
T Consensus 544 ~Ls~N~ 549 (768)
T 3rgz_A 544 DLNTNL 549 (768)
T ss_dssp ECCSSE
T ss_pred ECCCCc
Confidence 998764
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=4.7e-15 Score=119.66 Aligned_cols=137 Identities=21% Similarity=0.294 Sum_probs=94.8
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e---e----eehhh---------ccccCcCCCCccE
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M---W----QLSRM---------ILSEYKFPPSLTQ 82 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~---~----~L~~L---------lp~l~~~~~~L~~ 82 (221)
++.+++|++|+++++. ...++ .+.++++|++|+++++.- . + +|+.| ++.+..+ ++|+.
T Consensus 81 ~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~ 155 (308)
T 1h6u_A 81 LKNLTKITELELSGNP---LKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL-TNLQY 155 (308)
T ss_dssp GTTCCSCCEEECCSCC---CSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC-TTCCE
T ss_pred HccCCCCCEEEccCCc---CCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCC-CCccE
Confidence 6666666666666664 22222 455556666666654210 0 0 12221 4456778 89999
Q ss_pred EEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCC
Q 045118 83 LSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC 162 (221)
Q Consensus 83 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~ 162 (221)
|++++|.+...+ .++.+++|+.|++++|.+.. ++ . ...+++|+.|++++|. +.+++ .+..+++|+.|++++|
T Consensus 156 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~--~~-~-l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 156 LSIGNAQVSDLT--PLANLSKLTTLKADDNKISD--IS-P-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--CG-G-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEE
T ss_pred EEccCCcCCCCh--hhcCCCCCCEEECCCCccCc--Ch-h-hcCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCC
Confidence 999999988654 38899999999999998765 33 2 5578999999999998 77776 4678999999999985
Q ss_pred ccccCcch
Q 045118 163 AYLRKLPE 170 (221)
Q Consensus 163 ~~l~~~~~ 170 (221)
. +...|.
T Consensus 228 ~-i~~~~~ 234 (308)
T 1h6u_A 228 T-ITNQPV 234 (308)
T ss_dssp E-EECCCE
T ss_pred e-eecCCe
Confidence 4 555544
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=6.2e-15 Score=125.46 Aligned_cols=178 Identities=21% Similarity=0.242 Sum_probs=100.8
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCc------ee----eehh
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGK------MW----QLSR 68 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~------~~----~L~~ 68 (221)
++|++|..-..... .+..++++++|++|+++++. . ..++ ..+.++++|++|+++++.- .+ +|+.
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR--L-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C-CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc--C-CccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 45666653322212 45667888888888888774 3 3333 3467777777777765310 01 2222
Q ss_pred h----------cc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118 69 M----------IL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS 137 (221)
Q Consensus 69 L----------lp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~ 137 (221)
| .+ .+..+ ++|+.|++++|.+...+...++.+++|+.|++++|.+... .+.. +..+++|+.|++++
T Consensus 133 L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~-~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYS-FKRLYRLKVLEISH 209 (477)
T ss_dssp EEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTC-SCSCTTCCEEEEEC
T ss_pred EECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-Chhh-cccCcccceeeCCC
Confidence 2 12 55666 7788888888877766666677788888888877765431 1112 45567777777776
Q ss_pred cccccceeeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCC
Q 045118 138 MLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWP 186 (221)
Q Consensus 138 ~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~ 186 (221)
+..+..++.......+|+.|++++| .++.+|. .+..+++|++|++.++
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS
T ss_pred CccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC
Confidence 6545544443333345555555552 3334432 3444555555555443
No 30
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.2e-15 Score=123.50 Aligned_cols=174 Identities=18% Similarity=0.132 Sum_probs=110.6
Q ss_pred CcceeceecCCC--CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-cee----ee---------
Q 045118 3 NLIFISALHPSS--CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-KMW----QL--------- 66 (221)
Q Consensus 3 ~L~~L~~~~~~~--~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~----~L--------- 66 (221)
+|++|..-.... ..+..++++++|++|+++++. ..... + +..+++|++|+++++. ..+ +|
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~-~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETL-D-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEEEE-E-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--CCcch-h-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCc
Confidence 556665333222 245678889999999998885 33322 2 7788888888887631 000 11
Q ss_pred ------------hhh---------c-c-ccCcCCCCccEEEeecccCCCCCchhh-ccCCCCcEEEecCCccCCceeeee
Q 045118 67 ------------SRM---------I-L-SEYKFPPSLTQLSLSNTELMEDPMPTL-EKLPHLEVLKLKQNSYLERKLACV 122 (221)
Q Consensus 67 ------------~~L---------l-p-~l~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~l~~~ 122 (221)
+.+ + + .+..+ ++|++|++++|.+...++..+ +.+++|++|++++|.+.. ++.
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~- 186 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKG- 186 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EEC-
T ss_pred cCCcCccccCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc--ccc-
Confidence 111 1 2 34445 666666666666665443443 356677777776666543 221
Q ss_pred CCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 123 GCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 123 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
...+++|+.|++++|. ++.++..+..+++|+.|++++| .++.+|..+..+++|+++++.+++
T Consensus 187 -~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 187 -QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred -ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 3347778888887777 7777666777788888888874 566777777888888888888776
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.61 E-value=1.4e-14 Score=123.23 Aligned_cols=106 Identities=21% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccE
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLES 156 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~ 156 (221)
.+|+.|++++|.+...+...++.+++|+.|++++|.+... .+.. +..+++|+.|+++++. +..+ +..+..+++|+.
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI-EGSM-LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE-CTTS-CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCE
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc-Chhh-ccccccCCEEECCCCc-cceECHHHhcCcccCCE
Confidence 4788888888888877766788999999999998887642 1223 5678999999999988 6666 456778999999
Q ss_pred EEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 157 LILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 157 L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
|++++| .++.++. .+..+++|++|++.+++
T Consensus 301 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 301 LNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred EECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 999995 5677765 46889999999999876
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=130.70 Aligned_cols=163 Identities=24% Similarity=0.265 Sum_probs=114.7
Q ss_pred CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce-----e----eehhh----------cc--ccCcCCCC
Q 045118 21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM-----W----QLSRM----------IL--SEYKFPPS 79 (221)
Q Consensus 21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~----~L~~L----------lp--~l~~~~~~ 79 (221)
+.+++|++|+++++........+..+.++++|++|+++++.-. + +|+.+ .| .+..+ ++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC-TT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC-CC
Confidence 4566666666666541111122455555666666666542100 1 11221 22 46677 89
Q ss_pred ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEE
Q 045118 80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLI 158 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~ 158 (221)
|+.|++++|.+....+..++.+++|++|++++|.+....++.. +..+++|+.|++++|. ++++ +..++.+++|++|+
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEe
Confidence 9999999998877666778889999999999888764446666 7889999999999998 7777 56778899999999
Q ss_pred ecCCccccCcc-hhhccCCcCcEEEccCCC
Q 045118 159 LNPCAYLRKLP-EELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 159 l~~~~~l~~~~-~~~~~l~~L~~l~l~~~~ 187 (221)
+++| .+..+| ..+..+++|+++++.+++
T Consensus 501 l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 501 MASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 9995 455554 457899999999999865
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=1.9e-15 Score=132.14 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=49.4
Q ss_pred CCccEEEeecccCCCC-CchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCcc
Q 045118 78 PSLTQLSLSNTELMED-PMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLE 155 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~ 155 (221)
++|+.|++++|.+... .+..++.+++|+.|++++|.+.+. .+.. +..+++|+.|++++|. +.++ +..++.+++|+
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGV-FDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTT-TTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCC
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-Chhh-hcccccCCEEECCCCc-CCCcCHHHccCCCcCC
Confidence 4444444444443321 122344444444444444443321 1112 3344555555555554 3333 33445556666
Q ss_pred EEEecCCccccCcchhhccCC-cCcEEEccCCC
Q 045118 156 SLILNPCAYLRKLPEELWCIK-SLCKLELHWPQ 187 (221)
Q Consensus 156 ~L~l~~~~~l~~~~~~~~~l~-~L~~l~l~~~~ 187 (221)
.|++++| .++.+|..+..++ +|+++++.+++
T Consensus 525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 6666653 3455555555555 36666666543
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=3e-15 Score=128.11 Aligned_cols=174 Identities=18% Similarity=0.110 Sum_probs=116.8
Q ss_pred CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-ee----e----------
Q 045118 3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-MW----Q---------- 65 (221)
Q Consensus 3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~----~---------- 65 (221)
+|++|..-+.... .+..++.+++|+.|++++|. .....+ +..+++|++|+++++.- .+ +
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 5666664333222 45678999999999999886 333333 78888888888876310 00 1
Q ss_pred -----------ehhh----------cc-ccCcCCCCccEEEeecccCCCCCchhhc-cCCCCcEEEecCCccCCceeeee
Q 045118 66 -----------LSRM----------IL-SEYKFPPSLTQLSLSNTELMEDPMPTLE-KLPHLEVLKLKQNSYLERKLACV 122 (221)
Q Consensus 66 -----------L~~L----------lp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~l~~~ 122 (221)
|+.| .| .++.+ ++|+.|++++|.+...++..+. .+++|+.|++++|.+.+ ++ .
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~-~ 186 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VK-G 186 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EE-C
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--cc-c
Confidence 1111 12 44555 6777777777776654444444 56777777777776654 22 2
Q ss_pred CCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 123 GCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 123 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
...+++|+.|++++|. +.+++..++.+++|+.|++++ +.+..+|..+..+++|+.+++.+++
T Consensus 187 -~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence 3357788888888877 777776777788888888888 4566778778888889999988876
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=1.9e-15 Score=119.81 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP 102 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 102 (221)
++|++|+++++. .....+..+.++++|++|+++++ ++..+.+ .+..+ ++|++|++++|.+...++..++.++
T Consensus 28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTC----CCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCc--ccccCHhHhccccCCcEEECCCC----cCCccCHHHccCC-cCCCEEECCCCccCccChhhhcCCc
Confidence 579999999996 44444458899999999999884 2233122 56777 7888888888887766656677788
Q ss_pred CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc--eeeCCCCCCCccEEEecCC
Q 045118 103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE--WTMGAGAMPKLESLILNPC 162 (221)
Q Consensus 103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~~ 162 (221)
+|++|++++|.+... .+.. +..+++|++|+++++. +.. ++..++.+++|++|++++|
T Consensus 101 ~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 101 SLQKLVAVETNLASL-ENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TCCEEECTTSCCCCS-TTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cccEEECCCCCcccc-Cchh-cccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence 888888877776542 1223 5567788888887776 554 4556667778888888774
No 36
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=3.4e-15 Score=130.73 Aligned_cols=166 Identities=25% Similarity=0.300 Sum_probs=130.2
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT 81 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~ 81 (221)
++|+.|..-......++.++.+++|+.|+++.+. ...++. +..+++|+.|+++++ .+.. +|.+..+ ++|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~---l~~~~~-l~~l~~L~~L~Ls~N----~l~~-l~~l~~l-~~L~ 112 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LTNLKNLGWLFLDEN----KIKD-LSSLKDL-KKLK 112 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC---CCCCGG-GGGCTTCCEEECCSS----CCCC-CTTSTTC-TTCC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC---CCCChh-hccCCCCCEEECcCC----CCCC-ChhhccC-CCCC
Confidence 4556665333333344568899999999999995 334444 899999999999985 2333 5678888 9999
Q ss_pred EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118 82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP 161 (221)
Q Consensus 82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 161 (221)
.|++++|.+... +.++.+++|+.|++++|.+.. ++ . +..+++|+.|+|++|. +.+++. +..+++|+.|++++
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l~-~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--IT-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC--CG-G-GGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCS
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCC--ch-h-hcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcC
Confidence 999999998864 578899999999999998766 32 4 6689999999999998 776654 77899999999998
Q ss_pred CccccCcchhhccCCcCcEEEccCCC
Q 045118 162 CAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 162 ~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
| .+..++ .+..+++|+.|++.+++
T Consensus 185 N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 N-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp S-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred C-CCCCCh-HHccCCCCCEEEccCCc
Confidence 5 566665 58899999999998864
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=7.6e-15 Score=116.29 Aligned_cols=154 Identities=25% Similarity=0.247 Sum_probs=119.0
Q ss_pred CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCC
Q 045118 1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPS 79 (221)
Q Consensus 1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~ 79 (221)
+++|+.|.........++.++.+++|++|+++++. .....+..+.++++|++|+++++ ++..+.+ .+..+ ++
T Consensus 62 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~ 134 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ--LQSLPNGVFDKLTNLKELVLVEN----QLQSLPDGVFDKL-TN 134 (272)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTC-TT
T ss_pred CCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc--cCccChhHhcCCcCCCEEECCCC----cCCccCHHHhccC-CC
Confidence 35677776443333345679999999999999996 44444556899999999999984 2333223 57888 99
Q ss_pred ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEE
Q 045118 80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLI 158 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~ 158 (221)
|++|++++|.+...+...++.+++|++|++++|.+.. ++...+..+++|+.|++++|. +.+++.. ++.+++|+.|+
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEE
Confidence 9999999999998776678899999999999998765 332214678999999999998 7777544 57799999999
Q ss_pred ecCCcc
Q 045118 159 LNPCAY 164 (221)
Q Consensus 159 l~~~~~ 164 (221)
+++|+.
T Consensus 212 l~~N~~ 217 (272)
T 3rfs_A 212 LHDNPW 217 (272)
T ss_dssp CCSSCB
T ss_pred ccCCCc
Confidence 999754
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.8e-15 Score=131.21 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=54.1
Q ss_pred CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEE
Q 045118 79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLI 158 (221)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~ 158 (221)
+|+.|++++|.+... ..++.+++|+.|++++|.+.+. .+.. +..+++|+.|++++|. +..++...+.+++|+.|+
T Consensus 233 ~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 233 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI-MYHP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp CCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-ESGG-GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEE
T ss_pred CCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCC-CHHH-hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEE
Confidence 344444444444322 3456666777777766665432 2323 5556666666666665 566655555566666666
Q ss_pred ecCCccccCcchhhccCCcCcEEEccC
Q 045118 159 LNPCAYLRKLPEELWCIKSLCKLELHW 185 (221)
Q Consensus 159 l~~~~~l~~~~~~~~~l~~L~~l~l~~ 185 (221)
+++| .+..+|..+..+++|++|++.+
T Consensus 308 Ls~N-~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 308 LSHN-HLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred CCCC-CCCccCcccccCCCCCEEECCC
Confidence 6663 3445554444444444444433
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=123.03 Aligned_cols=157 Identities=20% Similarity=0.150 Sum_probs=86.0
Q ss_pred hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCc-
Q 045118 19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPM- 95 (221)
Q Consensus 19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~- 95 (221)
.++++++|++|+++++. .....+..+.++++|++|+++++ .+.. +| .++.+ ++|++|++++|.+...+.
T Consensus 71 ~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n----~l~~-~~~~~~~~l-~~L~~L~L~~n~l~~l~~~ 142 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNG--INTIEEDSFSSLGSLEHLDLSYN----YLSN-LSSSWFKPL-SSLTFLNLLGNPYKTLGET 142 (353)
T ss_dssp TTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSS----CCSS-CCHHHHTTC-TTCSEEECTTCCCSSSCSS
T ss_pred HhccCCCCCEEECCCCc--cCccCHhhcCCCCCCCEEECCCC----cCCc-CCHhHhCCC-ccCCEEECCCCCCcccCch
Confidence 46666666666666664 33333455666666666666653 1222 33 35556 666666666666665443
Q ss_pred hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEEecCCccccCcchh-hc
Q 045118 96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEE-LW 173 (221)
Q Consensus 96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~ 173 (221)
..++.+++|++|++++|.......+.. +..+++|+.|+++++. +... +..++.+++|++|++++|. +..+|.. +.
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~ 219 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD 219 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHH
T ss_pred hhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhhhhh
Confidence 345566666666666553222111222 4456666666666665 4444 4445556666666666633 4444433 23
Q ss_pred cCCcCcEEEccCC
Q 045118 174 CIKSLCKLELHWP 186 (221)
Q Consensus 174 ~l~~L~~l~l~~~ 186 (221)
.+++|++|++.++
T Consensus 220 ~~~~L~~L~L~~n 232 (353)
T 2z80_A 220 VTSSVECLELRDT 232 (353)
T ss_dssp HTTTEEEEEEESC
T ss_pred hcccccEEECCCC
Confidence 4566666666554
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=5.5e-15 Score=127.00 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=125.6
Q ss_pred CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh--cc-ccCcCCCCccEEEeecccCCC-CCch
Q 045118 21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM--IL-SEYKFPPSLTQLSLSNTELME-DPMP 96 (221)
Q Consensus 21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L--lp-~l~~~~~~L~~L~l~~~~~~~-~~~~ 96 (221)
+.+++|++|+++++. ..+..|..++++++|++|+++++ ++..+ +| .++.+ ++|+.|++++|.+.. .+..
T Consensus 321 ~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N----~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL--LTDTVFENCGHLTELETLILQMN----QLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SSCCCCCEEECCSSC--CCTTTTTTCCCCSSCCEEECCSS----CCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGC
T ss_pred hhCCcccEEEeECCc--cChhhhhhhccCCCCCEEEccCC----ccCccccchHHHhhC-CCCCEEECCCCcCCcccccc
Confidence 688999999999997 66667888999999999999885 22321 44 67888 999999999999986 4444
Q ss_pred hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchh-hccC
Q 045118 97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWCI 175 (221)
Q Consensus 97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l 175 (221)
.+..+++|++|++++|.+.+. .+.. . .++|+.|++++|. ++.++.....+++|+.|++++| .++.+|.. +..+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~-~~~~-l--~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 467 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDT-IFRC-L--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL 467 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGG-GGGS-C--CTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hhccCccCCEEECcCCCCCcc-hhhh-h--cccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC
Confidence 578899999999999887643 2222 2 2799999999998 8888887778999999999995 67788876 8899
Q ss_pred CcCcEEEccCCC
Q 045118 176 KSLCKLELHWPQ 187 (221)
Q Consensus 176 ~~L~~l~l~~~~ 187 (221)
++|+++++.+++
T Consensus 468 ~~L~~L~l~~N~ 479 (520)
T 2z7x_B 468 TSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEECcCCC
Confidence 999999999876
No 41
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=2.8e-14 Score=110.74 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=98.4
Q ss_pred CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeec-ccCCCCCchhhccC
Q 045118 25 NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSN-TELMEDPMPTLEKL 101 (221)
Q Consensus 25 ~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~l 101 (221)
++++|+++++. .....+..+.++++|++|+++++.. ++. ++ .+..+ ++|++|++++ |.+...+...++.+
T Consensus 32 ~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~---l~~-i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVT---LQQ-LESHSFYNL-SKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSS---CCE-ECTTTEESC-TTCCEEEEEEETTCCEECTTSEECC
T ss_pred cccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCC---cce-eCHhHcCCC-cCCcEEECCCCCCeeEcCHHHhCCC
Confidence 67788888775 3333334677788888888877410 222 33 56667 7888888887 77776655567778
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCccc---EEeccccccccceeeC-CCCCCCcc-EEEecCCccccCcchhhccCC
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLK---ILHLKSMLWLEEWTMG-AGAMPKLE-SLILNPCAYLRKLPEELWCIK 176 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~---~L~L~~~~~l~~~~~~-~~~l~~L~-~L~l~~~~~l~~~~~~~~~l~ 176 (221)
++|++|++++|.+.. ++ . +..+++|+ .|+++++..++.++.. +..+++|+ .|++++ +.+..+|......+
T Consensus 105 ~~L~~L~l~~n~l~~--lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM--FP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGT 179 (239)
T ss_dssp TTCCEEEEEEECCCS--CC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTC
T ss_pred CCCCEEeCCCCCCcc--cc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCC
Confidence 888888887777654 33 1 34555665 8888777337766543 56677788 888877 34556665544447
Q ss_pred cCcEEEccCC
Q 045118 177 SLCKLELHWP 186 (221)
Q Consensus 177 ~L~~l~l~~~ 186 (221)
+|+++++.++
T Consensus 180 ~L~~L~L~~n 189 (239)
T 2xwt_C 180 KLDAVYLNKN 189 (239)
T ss_dssp EEEEEECTTC
T ss_pred CCCEEEcCCC
Confidence 7788887776
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.59 E-value=1e-14 Score=127.45 Aligned_cols=162 Identities=22% Similarity=0.211 Sum_probs=91.7
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC------cee----eehhh----------cc--ccCcCC
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG------KMW----QLSRM----------IL--SEYKFP 77 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~----~L~~L----------lp--~l~~~~ 77 (221)
++++++|++|+++++........+..+.++++|++|+++++. ..+ +|+.+ .| ++..+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l- 424 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL- 424 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC-
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc-
Confidence 666666666666666411111114455566666666665521 000 12221 12 35666
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceee--eeCCCCCCcccEEeccccccccce-eeCCCCCCCc
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLA--CVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKL 154 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~--~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L 154 (221)
++|+.|++++|.+...++..++.+++|++|++++|.+.+..++ .. +..+++|+.|++++|. +.++ +..++.+++|
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFCD-LSSIDQHAFTSLKMM 502 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCCCc-cCccChhhhccccCC
Confidence 7788888888877766556677778888888877776543222 12 4456777777777776 5555 3455667777
Q ss_pred cEEEecCCccccCcchhhccCCcCcEEEccC
Q 045118 155 ESLILNPCAYLRKLPEELWCIKSLCKLELHW 185 (221)
Q Consensus 155 ~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~ 185 (221)
+.|++++|.-....|..+.+++.| ++++.+
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 777777654322334444444444 444443
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1e-14 Score=116.78 Aligned_cols=157 Identities=26% Similarity=0.285 Sum_probs=124.7
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCc
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPM 95 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~ 95 (221)
+|..+. ++++.|+++++. .....+..+.++++|++|+++++ .+.. ++..+.+ ++|+.|++++|.+...+
T Consensus 25 ip~~~~--~~l~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~-~~~~~~l-~~L~~L~Ls~N~l~~l~- 93 (290)
T 1p9a_G 25 LPPDLP--KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRA----ELTK-LQVDGTL-PVLGTLDLSHNQLQSLP- 93 (290)
T ss_dssp CCSCCC--TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTTS----CCCE-EECCSCC-TTCCEEECCSSCCSSCC-
T ss_pred CCCCCC--CCCCEEEcCCCc--CCccCHHHhhcCCCCCEEECCCC----ccCc-ccCCCCC-CcCCEEECCCCcCCcCc-
Confidence 444443 689999999997 55556778999999999999984 2233 4545777 99999999999998665
Q ss_pred hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcchh-hc
Q 045118 96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEE-LW 173 (221)
Q Consensus 96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~ 173 (221)
..++.+++|++|++++|.+... .+.. +..+++|+.|+++++. +..++.. +..+++|+.|++++ +.++.+|.+ +.
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~ 169 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSL-PLGA-LRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLN 169 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCC-CSST-TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTT
T ss_pred hhhccCCCCCEEECCCCcCccc-CHHH-HcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCC-CcCCccCHHHhc
Confidence 4678899999999999988752 1234 6678999999999998 7777544 46789999999998 567788765 57
Q ss_pred cCCcCcEEEccCCC
Q 045118 174 CIKSLCKLELHWPQ 187 (221)
Q Consensus 174 ~l~~L~~l~l~~~~ 187 (221)
.+++|++|++.++.
T Consensus 170 ~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 170 GLENLDTLLLQENS 183 (290)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CcCCCCEEECCCCc
Confidence 89999999998875
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=2.2e-14 Score=113.43 Aligned_cols=152 Identities=23% Similarity=0.291 Sum_probs=122.0
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
+++++|+++++. .....+..+.++++|++|+++++ .+.. +| .+..+ ++|++|++++|.+...+...++.+
T Consensus 37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n----~l~~-i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDN----KLQT-LPAGIFKEL-KNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSS----CCSC-CCTTTTSSC-TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCC----ccCe-eChhhhcCC-CCCCEEECCCCcCCcCCHhHcccc
Confidence 679999999996 44444457899999999999884 2333 44 46778 999999999999998877778899
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcch-hhccCCcCc
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-ELWCIKSLC 179 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~ 179 (221)
++|++|++++|.+... .+.. +..+++|+.|+++++. +..++.. ++.+++|++|++++| .+..++. .+..+++|+
T Consensus 109 ~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSL-PPRV-FDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELK 184 (270)
T ss_dssp SSCCEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred cCCCEEECCCCccCee-CHHH-hCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcC
Confidence 9999999999887652 2223 5678999999999998 7777654 677999999999985 5666654 478899999
Q ss_pred EEEccCCC
Q 045118 180 KLELHWPQ 187 (221)
Q Consensus 180 ~l~l~~~~ 187 (221)
+|++.++.
T Consensus 185 ~L~L~~N~ 192 (270)
T 2o6q_A 185 TLKLDNNQ 192 (270)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 99998864
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1e-14 Score=110.18 Aligned_cols=147 Identities=18% Similarity=0.281 Sum_probs=113.9
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCc
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSL 80 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L 80 (221)
++|++|..-.......+.++.+++|++|+++++. ... ++.+..+++|++|+++++ .+....+ .++.+ ++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~---~~~-~~~l~~l~~L~~L~l~~n----~l~~~~~~~l~~l-~~L 114 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIH---ATN-YNPISGLSNLERLRIMGK----DVTSDKIPNLSGL-TSL 114 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC---CSC-CGGGTTCTTCCEEEEECT----TCBGGGSCCCTTC-TTC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCC---CCc-chhhhcCCCCCEEEeECC----ccCcccChhhcCC-CCC
Confidence 4567776444333332378999999999999994 233 347889999999999984 1222123 78888 999
Q ss_pred cEEEeecccCCCCCchhhccCCCCcEEEecCCc-cCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEe
Q 045118 81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS-YLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLIL 159 (221)
Q Consensus 81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l 159 (221)
++|++++|.+....+..++.+++|++|++++|. +.. ++ . +..+++|+.|++++|. +.+++ .+..+++|++|++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~-l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-P-LKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-G-GGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-h-hcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEe
Confidence 999999999987667789999999999999987 544 44 4 6689999999999998 77765 6677999999999
Q ss_pred cCCc
Q 045118 160 NPCA 163 (221)
Q Consensus 160 ~~~~ 163 (221)
+++.
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 9854
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.58 E-value=8.2e-15 Score=128.09 Aligned_cols=165 Identities=21% Similarity=0.183 Sum_probs=111.5
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-----cee----eehhh----------cc--ccCcCCC
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-----KMW----QLSRM----------IL--SEYKFPP 78 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-----~~~----~L~~L----------lp--~l~~~~~ 78 (221)
++.+++|++|+++++........+..+..+++|++|+++++. ..+ +|+.+ .| .+..+ +
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-E 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-T
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-c
Confidence 445555555555555311111135666667777777776531 001 22222 22 45666 7
Q ss_pred CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEE
Q 045118 79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESL 157 (221)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L 157 (221)
+|+.|++++|.+....+..++.+++|++|++++|.+.+...+.. +..+++|+.|++++|. +.++ +..++.+++|++|
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCCc-CCccChhhhcccccCCEE
Confidence 88888888888776666678888888999988887765445555 7788999999999887 6666 4457788999999
Q ss_pred EecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 158 ILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 158 ~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
++++|.-....|..+..+++|++|++.++.
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 999865433447788899999999998875
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=2.1e-14 Score=117.23 Aligned_cols=173 Identities=17% Similarity=0.199 Sum_probs=105.8
Q ss_pred CCcceeceecCC-CCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e---e----eehhh---
Q 045118 2 KNLIFISALHPS-SCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M---W----QLSRM--- 69 (221)
Q Consensus 2 ~~L~~L~~~~~~-~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~---~----~L~~L--- 69 (221)
++|+.|...... ...+..++.+++|++|+++++. ...++. +..+++|++|+++++.- . + +|+.+
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK---VKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC---CCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCC---cCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 456666533221 1244557888888888888875 233332 67788888888876310 0 0 11111
Q ss_pred ------ccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccc
Q 045118 70 ------ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEE 143 (221)
Q Consensus 70 ------lp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~ 143 (221)
++.+..+ ++|+.|++++|.+...+ .++.+++|++|++++|.+.. ++ . ...+++|+.|++++|. +.+
T Consensus 208 ~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~--~~-~-~~~l~~L~~L~l~~n~-l~~ 279 (347)
T 4fmz_A 208 VNQITDITPVANM-TRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD--IN-A-VKDLTKLKMLNVGSNQ-ISD 279 (347)
T ss_dssp SSCCCCCGGGGGC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--CG-G-GTTCTTCCEEECCSSC-CCC
T ss_pred cCCCCCCchhhcC-CcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccCC--Ch-h-HhcCCCcCEEEccCCc-cCC
Confidence 1234555 67777777777776544 26677777777777766554 22 3 4567777777777775 555
Q ss_pred eeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 144 WTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 144 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
++ .+..+++|+.|++++|......|..+..+++|++|++.+++
T Consensus 280 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 53 35567777777777754333445556777777777777765
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=6.1e-15 Score=124.61 Aligned_cols=111 Identities=24% Similarity=0.259 Sum_probs=88.6
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCC
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGA 150 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~ 150 (221)
+++.+ ++|+.|++++|.+...++..++.+++|++|++++|.+... .+.. +..+++|+.|++++|. +..+ +..++.
T Consensus 294 ~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 369 (455)
T 3v47_A 294 VFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRM-FENLDKLEVLDLSYNH-IRALGDQSFLG 369 (455)
T ss_dssp TTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGG-GTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred hcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-ChhH-hcCcccCCEEECCCCc-ccccChhhccc
Confidence 56777 8999999999988877666888899999999988877442 2334 6678999999999988 6766 556778
Q ss_pred CCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 151 MPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
+++|++|++++ +.++.+|. .+..+++|++|++.+++
T Consensus 370 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 370 LPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 99999999998 55677765 45889999999998765
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=2.6e-14 Score=116.22 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=93.0
Q ss_pred CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCC
Q 045118 3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPS 79 (221)
Q Consensus 3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~ 79 (221)
+|+.|........ .+..++++++|++|+++++. .....+..++++++|++|+++++. +.. +| .+ . ++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~----l~~-l~~~~--~-~~ 124 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKNH----LVE-IPPNL--P-SS 124 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECGGGSTTCTTCCEEECCSSC----CCS-CCSSC--C-TT
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--cCccCHhHhhCcCCCCEEECCCCc----CCc-cCccc--c-cc
Confidence 4555553322222 34568888899999988886 555557788888999999988741 111 12 11 1 34
Q ss_pred ccEEEeecccCCCCCchhhccCCCCcEEEecCCcc---------------------------------------------
Q 045118 80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY--------------------------------------------- 114 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--------------------------------------------- 114 (221)
|++|++++|.+...+...++.+++|+.|++++|.+
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK 204 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc
Confidence 44444444444433333344444444444443332
Q ss_pred -CCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 115 -LERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 115 -~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
... .+.. +..+++|+.|+++++. +.+++. .++.+++|+.|++++ +.+..+|..+..+++|++|++.++.
T Consensus 205 i~~~-~~~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 205 IQAI-ELED-LLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCCC-CTTS-STTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCcc-CHHH-hcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCC
Confidence 211 0011 3344556666665555 444432 345566777777776 3455666666777777777776654
No 50
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.58 E-value=1.8e-14 Score=121.65 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=17.5
Q ss_pred hcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118 19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
.++++++|++|+++++. .....|..++++++|++|++++
T Consensus 74 ~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQ--FLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp TTTTCTTCCEEECTTCT--TCEECTTTTTTCTTCCEEECTT
T ss_pred cccccccCCEEeCCCCc--cCccChhhccCcccCCEEeCCC
Confidence 34455555555555443 2223334444444444444443
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=1.5e-14 Score=125.57 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=126.8
Q ss_pred CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh--cc-ccCcCCCCccEEEeecccCCC-CCch
Q 045118 21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM--IL-SEYKFPPSLTQLSLSNTELME-DPMP 96 (221)
Q Consensus 21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L--lp-~l~~~~~~L~~L~l~~~~~~~-~~~~ 96 (221)
+.+++|++|+++++. ..+..|..+.++++|++|+++++ +++.+ +| .+..+ ++|+.|++++|.+.. .+..
T Consensus 350 ~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~N----~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV--FTDSVFQGCSTLKRLQTLILQRN----GLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSC--CCTTTTTTCCSCSSCCEEECCSS----CCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCc--cccchhhhhcccCCCCEEECCCC----CcCCcccchhhhcCC-CCCCEEECCCCcCCCccChh
Confidence 788999999999997 66667888999999999999985 22331 34 57888 999999999999986 5555
Q ss_pred hhccCCCCcEEEecCCccCCceeeeeCCCCC-CcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchh-hcc
Q 045118 97 TLEKLPHLEVLKLKQNSYLERKLACVGCSSF-SQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWC 174 (221)
Q Consensus 97 ~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~ 174 (221)
.+..+++|++|++++|.+.+. .+ ..+ ++|+.|++++|. ++.++.....+++|+.|++++ +.++.+|.. +..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~-~~----~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~ 495 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGS-VF----RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDR 495 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGG-GG----SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTT
T ss_pred hhcCcccCCEEECCCCCCCcc-hh----hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhc
Confidence 688899999999999987643 22 233 699999999997 888988877899999999998 567788877 889
Q ss_pred CCcCcEEEccCCC
Q 045118 175 IKSLCKLELHWPQ 187 (221)
Q Consensus 175 l~~L~~l~l~~~~ 187 (221)
+++|+++++.+++
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 9999999999876
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=1.5e-14 Score=113.13 Aligned_cols=151 Identities=17% Similarity=0.224 Sum_probs=117.7
Q ss_pred CcceeceecCCC--CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCC
Q 045118 3 NLIFISALHPSS--CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPS 79 (221)
Q Consensus 3 ~L~~L~~~~~~~--~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~ 79 (221)
+++.|..-.... ..+..++++++|++|+++++. .....+..+.++++|++|+++++ .+..+.+ .+..+ ++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~ 108 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANN----QLASLPLGVFDHL-TQ 108 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTC-TT
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEEECCCC----cccccChhHhccc-CC
Confidence 455665333222 245568999999999999996 55555667899999999999985 2333222 67888 99
Q ss_pred ccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEeccccccccceee-CCCCCCCccEE
Q 045118 80 LTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESL 157 (221)
Q Consensus 80 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L 157 (221)
|++|++++|.+...+...++.+++|++|++++|.+.. ++. . +..+++|+.|+++++. +..++. .+..+++|+.|
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--IPAGA-FDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--cCHHH-cCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 9999999999998776678899999999999998765 333 3 6678999999999998 777754 56779999999
Q ss_pred EecCCcc
Q 045118 158 ILNPCAY 164 (221)
Q Consensus 158 ~l~~~~~ 164 (221)
++++|+.
T Consensus 185 ~l~~N~~ 191 (251)
T 3m19_A 185 TLFGNQF 191 (251)
T ss_dssp ECCSCCB
T ss_pred EeeCCce
Confidence 9999653
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=2.8e-14 Score=116.50 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=77.7
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT 81 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~ 81 (221)
++|++|...+......+.++.+++|++|+++++. ...++. +.++++|++|+++++ .+.. +|.+..+ ++|+
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~---i~~~~~-~~~l~~L~~L~L~~n----~i~~-~~~~~~l-~~L~ 113 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ---ITDISP-LSNLVKLTNLYIGTN----KITD-ISALQNL-TNLR 113 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSS----CCCC-CGGGTTC-TTCS
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCc---cccchh-hhcCCcCCEEEccCC----cccC-chHHcCC-CcCC
Confidence 4556665433333334457778888888888874 333444 778888888888774 1122 3455566 6666
Q ss_pred EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118 82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP 161 (221)
Q Consensus 82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 161 (221)
+|++++|.+...+ .+..+++|++|++++|..... ++ . ...+++|+.|++.+|. +..++. ++.+++|++|++++
T Consensus 114 ~L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~-~~-~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 114 ELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSD-LS-P-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCC-CG-G-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTT
T ss_pred EEECcCCcccCch--hhccCCceeEEECCCCCCccc-cc-c-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccC
Confidence 6666666665443 255666666666655533221 11 1 3344555555555444 333221 33344444444444
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=2.7e-14 Score=115.93 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=111.0
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-cee------eehhh---------cc--ccCcCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-KMW------QLSRM---------IL--SEYKFP 77 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~------~L~~L---------lp--~l~~~~ 77 (221)
.+..++++++|++|+++++. .....|..+.++++|++|+++++. +.+ +|+.+ ++ .+..+
T Consensus 68 ~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l- 144 (330)
T 1xku_A 68 KDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL- 144 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC-
T ss_pred ChhhhccCCCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCC-
Confidence 33468889999999999886 445557888899999999998741 000 22222 22 35556
Q ss_pred CCccEEEeecccCCC--CCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCc
Q 045118 78 PSLTQLSLSNTELME--DPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKL 154 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L 154 (221)
++|+.|++++|.+.. .....++.+++|++|++++|.+.. ++.. .+++|+.|+++++. ++++ +..+..+++|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~---~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQG---LPPSLTELHLDGNK-ITKVDAASLKGLNNL 218 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSS---CCTTCSEEECTTSC-CCEECTGGGTTCTTC
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCcc---ccccCCEEECCCCc-CCccCHHHhcCCCCC
Confidence 677777777776643 233456677777777777766554 3322 34788888888877 6666 4456778999
Q ss_pred cEEEecCCccccCcc-hhhccCCcCcEEEccCCC
Q 045118 155 ESLILNPCAYLRKLP-EELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 155 ~~L~l~~~~~l~~~~-~~~~~l~~L~~l~l~~~~ 187 (221)
++|++++|. +..++ ..+..+++|++|++.++.
T Consensus 219 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 219 AKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp CEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred CEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 999999854 55554 467889999999998875
No 55
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.57 E-value=1.8e-14 Score=125.97 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=25.6
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
+|..++++++|++|+++++. .....+..+.++++|++|++++
T Consensus 293 lp~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANK--FENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCC--CSBGGGGCGGGCTTCSEEECCS
T ss_pred CChhhcccccCCEEECccCC--cCcCchhhhhccCcCCEEECCC
Confidence 55556667777777777664 3333445566666666666655
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=1.5e-14 Score=117.56 Aligned_cols=174 Identities=20% Similarity=0.180 Sum_probs=124.4
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCc-------------------cccchhHhhccCCCCcEEEeeec
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSY-------------------YHSGVSKSLCKLHKLECLKLVNK 60 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~-------------------~~~~~~~~l~~l~~L~~L~l~~~ 60 (221)
++|++|..-..... .+..++++++|++|+++++... .....+..+.++++|++|+++++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCC
Confidence 55666653332222 4677888999999998887510 11122334566666666666653
Q ss_pred Cceeeehh--hcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc
Q 045118 61 GKMWQLSR--MIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS 137 (221)
Q Consensus 61 ~~~~~L~~--Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~ 137 (221)
.+.. ..+ .+..+ ++|++|++++|.+...+. .+ .++|++|++++|.+... .+.. +..+++|+.|++++
T Consensus 156 ----~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 156 ----PLKSSGIENGAFQGM-KKLSYIRIADTNITTIPQ-GL--PPSLTELHLDGNKITKV-DAAS-LKGLNNLAKLGLSF 225 (330)
T ss_dssp ----CCCGGGBCTTGGGGC-TTCCEEECCSSCCCSCCS-SC--CTTCSEEECTTSCCCEE-CTGG-GTTCTTCCEEECCS
T ss_pred ----cCCccCcChhhccCC-CCcCEEECCCCccccCCc-cc--cccCCEEECCCCcCCcc-CHHH-hcCCCCCCEEECCC
Confidence 1111 123 67778 999999999999886553 22 38999999999887652 2334 66889999999999
Q ss_pred cccccceee-CCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 138 MLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 138 ~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+. +.+++. .++.+++|++|++++| .+..+|..+..+++|++|++.++.
T Consensus 226 n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 226 NS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp SC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred Cc-CceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 98 777754 5677999999999995 677899889999999999999875
No 57
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=2.2e-15 Score=132.91 Aligned_cols=158 Identities=15% Similarity=0.195 Sum_probs=94.9
Q ss_pred ChhhcCCCCCccEEEEEecCCccccc-----------------hhHhhc--cCCCCcEEEeeecCceeeehhhcc-ccCc
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSG-----------------VSKSLC--KLHKLECLKLVNKGKMWQLSRMIL-SEYK 75 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~L~~Llp-~l~~ 75 (221)
+|..++++++|++|+++++. ..+. +|+.++ ++++|++|+++++. +...+| .++.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~----l~~~~p~~l~~ 271 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP--FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP----NLTKLPTFLKA 271 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT----TCSSCCTTTTT
T ss_pred CCHHHhcccCCCEEECcCCc--cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc----CCccChHHHhc
Confidence 66778888888888888886 4342 788877 88888888888741 011145 5666
Q ss_pred CCCCccEEEeeccc-CCC-CCchhhccC------CCCcEEEecCCccCCceeee--eCCCCCCcccEEecccccccc-ce
Q 045118 76 FPPSLTQLSLSNTE-LME-DPMPTLEKL------PHLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLE-EW 144 (221)
Q Consensus 76 ~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~-~~ 144 (221)
+ ++|++|++++|. +.. ..+..++.+ ++|++|++++|.+.. ++. . ++.+++|+.|++++|. +. .+
T Consensus 272 l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~~~~-l~~l~~L~~L~L~~N~-l~g~i 346 (636)
T 4eco_A 272 L-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETS-LQKMKKLGMLECLYNQ-LEGKL 346 (636)
T ss_dssp C-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCCHHH-HTTCTTCCEEECCSCC-CEEEC
T ss_pred C-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCchhh-hccCCCCCEEeCcCCc-Cccch
Confidence 6 667777776665 543 223344443 666666666665552 444 3 4556666666666655 44 44
Q ss_pred eeCCCCCCCccEEEecCCccccCcchhhccCCc-CcEEEccCC
Q 045118 145 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKS-LCKLELHWP 186 (221)
Q Consensus 145 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~l~l~~~ 186 (221)
+ .++.+++|+.|++++| .+..+|..+..+++ |++|++.++
T Consensus 347 p-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp C-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS
T ss_pred h-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC
Confidence 4 4455555666666553 33455555555555 555555554
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=6.5e-15 Score=118.91 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=93.3
Q ss_pred CCCCccEEEEEecCCccccchhHhh--ccCCCCcEEEeeecCceeeehhhcc-ccCcC----CCCccEEEeecccCCCCC
Q 045118 22 RLPNVRTFRISGDLSYYHSGVSKSL--CKLHKLECLKLVNKGKMWQLSRMIL-SEYKF----PPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 22 ~l~~Lr~L~l~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~----~~~L~~L~l~~~~~~~~~ 94 (221)
++++|++|+++++. ..+.+|..+ ..+++|++|+++++ .+.. +| .++.+ +++|++|++++|.+...+
T Consensus 93 ~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~Ls~N----~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLE--VTGTAPPPLLEATGPDLNILNLRNV----SWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEB--CBSCCCCCSSSCCSCCCSEEEEESC----BCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CcCCccEEEccCCc--ccchhHHHHHHhcCCCccEEEccCC----CCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 57777777777775 444556554 67777777777764 1222 12 22221 267777777777777666
Q ss_pred chhhccCCCCcEEEecCCccCCc-eeeee-CCCCCCcccEEecccccccccee----eCCCCCCCccEEEecCCccccCc
Q 045118 95 MPTLEKLPHLEVLKLKQNSYLER-KLACV-GCSSFSQLKILHLKSMLWLEEWT----MGAGAMPKLESLILNPCAYLRKL 168 (221)
Q Consensus 95 ~~~l~~l~~L~~L~l~~~~~~~~-~l~~~-~~~~~~~L~~L~L~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~l~~~ 168 (221)
+..++.+++|++|++++|.+.+. .++.. ....+++|++|++++|. ++.++ ..+..+++|+.|++++|. +...
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 243 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDA 243 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence 56677777777777777764331 11111 02567777777777776 55332 112345777777777743 3332
Q ss_pred c--hhhccCCcCcEEEccCCC
Q 045118 169 P--EELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 169 ~--~~~~~l~~L~~l~l~~~~ 187 (221)
+ ..+..+++|++|++.++.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC
T ss_pred cchhhhhhcCCCCEEECCCCc
Confidence 2 234456777777777654
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=9e-15 Score=132.60 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=113.8
Q ss_pred ChhhcC--CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehh-hcc-cc-------CcCCCCccEEE
Q 045118 16 TPDILG--RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSR-MIL-SE-------YKFPPSLTQLS 84 (221)
Q Consensus 16 ~~~~l~--~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~-Llp-~l-------~~~~~~L~~L~ 84 (221)
+|..++ ++++|+.|+++.|. ....+|..++++++|++|+++++.. +.. -+| .+ ..+ ++|+.|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP~~l~~L~~L~~L~Ls~N~~---lsg~~iP~~i~~L~~~~~~l-~~L~~L~ 554 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCP--NMTQLPDFLYDLPELQSLNIACNRG---ISAAQLKADWTRLADDEDTG-PKIQIFY 554 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCT--TCCSCCGGGGGCSSCCEEECTTCTT---SCHHHHHHHHHHHHHCTTTT-TTCCEEE
T ss_pred CChhhhhccCCCCCEEECcCCC--CCccChHHHhCCCCCCEEECcCCCC---cccccchHHHHhhhhccccc-CCccEEE
Confidence 677777 99999999999997 6788899999999999999988520 121 133 22 334 5888888
Q ss_pred eecccCCCCCch--hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCC-ccEEEecC
Q 045118 85 LSNTELMEDPMP--TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPK-LESLILNP 161 (221)
Q Consensus 85 l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~-L~~L~l~~ 161 (221)
+++|.+...+ . .++.+++|+.|++++|.+. .++ . ++.+++|+.|++++|. +..++..+..+++ |+.|++++
T Consensus 555 Ls~N~L~~ip-~~~~l~~L~~L~~L~Ls~N~l~--~lp-~-~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 555 MGYNNLEEFP-ASASLQKMVKLGLLDCVHNKVR--HLE-A-FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCSSCCCBCC-CHHHHTTCTTCCEEECTTSCCC--BCC-C-CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCS
T ss_pred eeCCcCCccC-ChhhhhcCCCCCEEECCCCCcc--cch-h-hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcC
Confidence 8888888444 4 6888888888888888776 255 5 7778888888888877 6677766777777 88888887
Q ss_pred CccccCcchhhccCCc--CcEEEccCC
Q 045118 162 CAYLRKLPEELWCIKS--LCKLELHWP 186 (221)
Q Consensus 162 ~~~l~~~~~~~~~l~~--L~~l~l~~~ 186 (221)
|. +..+|..+...+. |++|++.++
T Consensus 629 N~-L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 629 NK-LKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp SC-CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred CC-CCcCchhhhccccCCCCEEECcCC
Confidence 44 4566654443332 555555544
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=6.2e-15 Score=133.67 Aligned_cols=159 Identities=16% Similarity=0.253 Sum_probs=131.4
Q ss_pred ChhhcCCCCCccEEEEEecCCcccc-----------------chhHhhc--cCCCCcEEEeeecCceeeehhhcc-ccCc
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHS-----------------GVSKSLC--KLHKLECLKLVNKGKMWQLSRMIL-SEYK 75 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~L~~Llp-~l~~ 75 (221)
+|..++++++|+.|+++++. ..+ .+|+.++ ++++|++|+++++. +...+| .++.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~----l~~~iP~~l~~ 513 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP----NMTQLPDFLYD 513 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT----TCCSCCGGGGG
T ss_pred hhHHHhcCCCCCEEECcCCc--CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC----CCccChHHHhC
Confidence 67889999999999999996 444 3888888 99999999999841 111167 7899
Q ss_pred CCCCccEEEeeccc-CCC-CCchhhccC-------CCCcEEEecCCccCCceeee--eCCCCCCcccEEeccccccccce
Q 045118 76 FPPSLTQLSLSNTE-LME-DPMPTLEKL-------PHLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLEEW 144 (221)
Q Consensus 76 ~~~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~~~ 144 (221)
+ ++|+.|++++|. +.. ..+..++.+ ++|+.|++++|.+.. +|. . +..+++|+.|++++|. +..+
T Consensus 514 L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~-l~~L~~L~~L~Ls~N~-l~~l 588 (876)
T 4ecn_A 514 L-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE--FPASAS-LQKMVKLGLLDCVHNK-VRHL 588 (876)
T ss_dssp C-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--CCCHHH-HTTCTTCCEEECTTSC-CCBC
T ss_pred C-CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--cCChhh-hhcCCCCCEEECCCCC-cccc
Confidence 9 999999999998 764 233445444 599999999998873 776 5 7789999999999998 7788
Q ss_pred eeCCCCCCCccEEEecCCccccCcchhhccCCc-CcEEEccCCC
Q 045118 145 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKS-LCKLELHWPQ 187 (221)
Q Consensus 145 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~l~l~~~~ 187 (221)
| .++.+++|+.|++++|. +..+|..+..+++ |++|++.++.
T Consensus 589 p-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp C-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC
T ss_pred h-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC
Confidence 8 88889999999999954 5689988999999 9999999875
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.54 E-value=1.8e-14 Score=127.02 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=9.1
Q ss_pred ChhhcCCCCC-ccEEEEEec
Q 045118 16 TPDILGRLPN-VRTFRISGD 34 (221)
Q Consensus 16 ~~~~l~~l~~-Lr~L~l~~~ 34 (221)
+|..++++++ |++|+++++
T Consensus 368 lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 368 IPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CCTTSEEECTTCCEEECCSS
T ss_pred ccHhhhhhcccCcEEEccCC
Confidence 3344444444 555555544
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=1.5e-14 Score=124.98 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=69.0
Q ss_pred hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC-c
Q 045118 18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP-M 95 (221)
Q Consensus 18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~-~ 95 (221)
..++++++|++|+++++. .....+..+.++++|++|+++++ .+..+.| +++.+ ++|++|++++|.+...+ +
T Consensus 44 ~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 44 GDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDLSDN----HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp STTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTS----CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSS
T ss_pred hhhhcCCcccEEECCCCC--cCccChhhccccccCCEEECCCC----ccCccCHHHhccC-CCCcEEECCCCcccccchh
Confidence 344455555555555543 22333344455555555555442 1122112 34444 55555555555544321 1
Q ss_pred hhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEeccccccccc-eeeCCCCCCCccEEEecCCccccCcchh-h
Q 045118 96 PTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEE-WTMGAGAMPKLESLILNPCAYLRKLPEE-L 172 (221)
Q Consensus 96 ~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~ 172 (221)
..++.+++|++|++++|...+. ++ .. +..+++|++|+++++. +.. .+..++.+++|++|++.++ ....+|.. +
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~-~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~ 192 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSE-IRRID-FAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFA 192 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCE-ECTTT-TTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHH
T ss_pred hhhhccCCccEEECCCCccccc-cCHhh-hhcccccCeeeccCCc-ccccChhhhhccccCceEecccC-cccccchhhH
Confidence 2344455555555544442221 21 12 3344555555555444 332 2333444555555555542 22333332 2
Q ss_pred ccCCcCcEEEccCC
Q 045118 173 WCIKSLCKLELHWP 186 (221)
Q Consensus 173 ~~l~~L~~l~l~~~ 186 (221)
..+++|+++++.++
T Consensus 193 ~~l~~L~~L~L~~n 206 (549)
T 2z81_A 193 DILSSVRYLELRDT 206 (549)
T ss_dssp HSTTTBSEEEEESC
T ss_pred hhcccccEEEccCC
Confidence 34566666666554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=1.3e-14 Score=117.41 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=97.0
Q ss_pred hhccCCCCcEEEeeecCceeeehhhcc-cc-CcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeee
Q 045118 45 SLCKLHKLECLKLVNKGKMWQLSRMIL-SE-YKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACV 122 (221)
Q Consensus 45 ~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~ 122 (221)
.+..+++|++|+++++ .+..+.+ .+ ..+ ++|++|++++|.+... +....+++|++|++++|.+.. ++..
T Consensus 139 ~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--l~~~ 209 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLN----EIDTVNFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPE 209 (317)
T ss_dssp CTGGGSSEEEEECTTS----CCCEEEGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGG
T ss_pred hhhccCCCCEEECCCC----CCCcccHHHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc--chhh
Confidence 4444555555555542 1122122 33 467 8999999999998755 344469999999999998765 5545
Q ss_pred CCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccc-cCcchhhccCCcCcEEEccCC
Q 045118 123 GCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL-RKLPEELWCIKSLCKLELHWP 186 (221)
Q Consensus 123 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~l~l~~~ 186 (221)
+..+++|+.|++++|. ++.++..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.++
T Consensus 210 -~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 210 -FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp -GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -hcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 6678999999999998 8889888888999999999997654 356667888888888877643
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=115.62 Aligned_cols=174 Identities=19% Similarity=0.181 Sum_probs=93.8
Q ss_pred CCcceeceecCC--CCChhhc--CCCCCccEEEEEecCCccccch---h-HhhccCCCCcEEEeeecCceeeehhhcc-c
Q 045118 2 KNLIFISALHPS--SCTPDIL--GRLPNVRTFRISGDLSYYHSGV---S-KSLCKLHKLECLKLVNKGKMWQLSRMIL-S 72 (221)
Q Consensus 2 ~~L~~L~~~~~~--~~~~~~l--~~l~~Lr~L~l~~~~~~~~~~~---~-~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~ 72 (221)
++|++|...+.. +..+..+ +++++|++|++++|. ..... + ..+..+++|++|+++++ .+..+.| .
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~L~~L~Ls~n----~l~~~~~~~ 164 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--WATGRSWLAELQQWLKPGLKVLSIAQA----HSPAFSCEQ 164 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--CSSTTSSHHHHHTTBCSCCCEEEEECC----SSCCCCTTS
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--ccchhhhhHHHHhhhccCCCEEEeeCC----CcchhhHHH
Confidence 356676643332 2355555 778888888888875 32221 1 34456788888888774 1122122 4
Q ss_pred cCcCCCCccEEEeecccCCCC---C-chhhccCCCCcEEEecCCccCCce-eee-eCCCCCCcccEEeccccccccce-e
Q 045118 73 EYKFPPSLTQLSLSNTELMED---P-MPTLEKLPHLEVLKLKQNSYLERK-LAC-VGCSSFSQLKILHLKSMLWLEEW-T 145 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~-l~~-~~~~~~~~L~~L~L~~~~~l~~~-~ 145 (221)
++.+ ++|++|++++|.+... + ...++.+++|++|++++|.+.... .+. . ...+++|++|++++|. +.+. |
T Consensus 165 ~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l-~~~l~~L~~L~Ls~N~-l~~~~p 241 (310)
T 4glp_A 165 VRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL-AAAGVQPHSLDLSHNS-LRATVN 241 (310)
T ss_dssp CCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH-HHHTCCCSSEECTTSC-CCCCCC
T ss_pred hccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH-HhcCCCCCEEECCCCC-CCccch
Confidence 5566 6677777777665321 0 112245666666666666553210 000 1 1235666666666665 4444 3
Q ss_pred eCCCCC---CCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 146 MGAGAM---PKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 146 ~~~~~l---~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
..++.+ ++|++|++++ +.++.+|..+. ++|++|++..+.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp SCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSCC
T ss_pred hhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCCc
Confidence 333333 5666666665 34455555442 566666666554
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=117.72 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=124.1
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP 102 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 102 (221)
++|++|+++++. .....+..+.++++|++|+++++ .+..+.| .+..+ ++|++|++++|.+...+...++.++
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSN----GINTIEEDSFSSL-GSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTS----CCCEECTTTTTTC-TTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCC----ccCccCHhhcCCC-CCCCEEECCCCcCCcCCHhHhCCCc
Confidence 589999999996 44433447899999999999874 2233234 68888 9999999999999987766689999
Q ss_pred CCcEEEecCCccCCceeee--eCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcchhhccCCcCc
Q 045118 103 HLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLC 179 (221)
Q Consensus 103 ~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 179 (221)
+|++|++++|.+.. ++. . +..+++|+.|++++|..+..++ ..++.+++|++|++++|......|..+..+++|+
T Consensus 125 ~L~~L~L~~n~l~~--l~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 125 SLTFLNLLGNPYKT--LGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TCSEEECTTCCCSS--SCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCEEECCCCCCcc--cCchhh-hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 99999999998775 443 4 6679999999999986577774 4577899999999999654334477889999999
Q ss_pred EEEccCCC
Q 045118 180 KLELHWPQ 187 (221)
Q Consensus 180 ~l~l~~~~ 187 (221)
+|++.++.
T Consensus 202 ~L~l~~n~ 209 (353)
T 2z80_A 202 HLILHMKQ 209 (353)
T ss_dssp EEEEECSC
T ss_pred eecCCCCc
Confidence 99999876
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=2.6e-15 Score=122.00 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=103.3
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehh-hcc-ccCcCCCCccEEEeecc-cCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSR-MIL-SEYKFPPSLTQLSLSNT-ELME 92 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~-Llp-~l~~~~~~L~~L~l~~~-~~~~ 92 (221)
.+..++++++|++|+++++. ..+..+..+.++++|++|+++++.. +.. -++ .+..+ ++|++|++++| .+..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~L~~~~~---l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCSG---FSEFALQTLLSSC-SRLDELNLSWCFDFTE 183 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCBS---CCHHHHHHHHHHC-TTCCEEECCCCTTCCH
T ss_pred HHHHHhhCCCCCEEeCcCcc--cCHHHHHHHhcCCCCCEEECCCCCC---CCHHHHHHHHhcC-CCCCEEcCCCCCCcCh
Confidence 33446666677777766664 4445566666677777777765310 010 033 35566 78888888888 6654
Q ss_pred CC-chhhccCC-CCcEEEecCCc--cCCceeeeeCCCCCCcccEEecccccccc-ceeeCCCCCCCccEEEecCCccccC
Q 045118 93 DP-MPTLEKLP-HLEVLKLKQNS--YLERKLACVGCSSFSQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRK 167 (221)
Q Consensus 93 ~~-~~~l~~l~-~L~~L~l~~~~--~~~~~l~~~~~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~ 167 (221)
.. ...++.++ +|++|++++|. +....++.. ...+++|+.|++++|..++ ..+..++.+++|++|++++|..+..
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 32 33466788 88888887773 332334444 4567888888888877433 3344566778888888888763332
Q ss_pred c-chhhccCCcCcEEEccCC
Q 045118 168 L-PEELWCIKSLCKLELHWP 186 (221)
Q Consensus 168 ~-~~~~~~l~~L~~l~l~~~ 186 (221)
. ...+..+++|++|++.+|
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHhcCCCCCEEeccCc
Confidence 2 124677888888888876
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.53 E-value=4.1e-14 Score=122.63 Aligned_cols=175 Identities=16% Similarity=0.176 Sum_probs=121.4
Q ss_pred CcceeceecCCCC-ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce--------e----eehhh
Q 045118 3 NLIFISALHPSSC-TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM--------W----QLSRM 69 (221)
Q Consensus 3 ~L~~L~~~~~~~~-~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--------~----~L~~L 69 (221)
+|++|........ ++. +.+++|+.|+++++. .....+. ..+++|++|+++++.-. + +|+.+
T Consensus 305 ~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~--~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 305 GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK--GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB--SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred CccEEeeccCcccccCc--ccccccCEEeCcCCc--ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence 4556654333222 333 578999999999986 3333332 78999999999874210 0 23333
Q ss_pred ---------cc-ccCcCCCCccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccc
Q 045118 70 ---------IL-SEYKFPPSLTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSM 138 (221)
Q Consensus 70 ---------lp-~l~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~ 138 (221)
+| .+..+ ++|+.|++++|.+...++ ..++.+++|++|++++|.+... .+.. +..+++|+.|++.+|
T Consensus 379 ~l~~n~l~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 379 DLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGI-FNGLSSLEVLKMAGN 455 (570)
T ss_dssp ECCSCSEEEEEEEEETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTT-TTTCTTCCEEECTTC
T ss_pred ECCCCcccccccccccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhh-hhcCCcCcEEECcCC
Confidence 22 45666 788888888888765443 4577888899999988775442 3334 567889999999988
Q ss_pred cccc--ceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 139 LWLE--EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 139 ~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
. +. .++..++.+++|+.|++++|.-....|..+..+++|++|++.++.
T Consensus 456 ~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 456 S-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp E-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred c-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 7 44 467778889999999999865333337778889999999998864
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.53 E-value=1.5e-13 Score=116.69 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=17.7
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
++++++|++|+++++. ...+ +.+.++++|++|++++
T Consensus 173 ~~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 173 LANLTTLERLDISSNK---VSDI-SVLAKLTNLESLIATN 208 (466)
T ss_dssp GTTCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCS
T ss_pred hccCCCCCEEECcCCc---CCCC-hhhccCCCCCEEEecC
Confidence 5556666666665553 1111 2244455555555544
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=129.34 Aligned_cols=176 Identities=13% Similarity=0.058 Sum_probs=110.9
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccch-hHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCC
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGV-SKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFP 77 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~ 77 (221)
+++++|..-..... .+..++++++|++|+++++. ....+ +..+.++++|++|+++++ .+..+.| +++.+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls~N----~l~~~~p~~~~~l- 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGSS----KIYFLHPDAFQGL- 96 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECTTC----CCCEECTTSSCSC-
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECCCC----cCcccCHhHccCC-
Confidence 45666654333222 45667788888888888774 33444 567788888888888764 2233235 67777
Q ss_pred CCccEEEeecccCCCCCch--hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC--C
Q 045118 78 PSLTQLSLSNTELMEDPMP--TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM--P 152 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l--~ 152 (221)
++|++|++++|.+....+. .++.+++|++|++++|.+.....+.. ++.+++|+.|+++++. +... +..++.+ +
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS-FGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGK 174 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG-GGTCSSCCEEEEESSC-CCCCCSGGGHHHHHC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh-HhhCCCCCEEECCCCc-CCeeCHHHcccccCC
Confidence 7888888888877653333 37778888888888777665433334 5677888888887766 4333 2333333 6
Q ss_pred CccEEEecCCccccCcchhhccCCc------CcEEEccCC
Q 045118 153 KLESLILNPCAYLRKLPEELWCIKS------LCKLELHWP 186 (221)
Q Consensus 153 ~L~~L~l~~~~~l~~~~~~~~~l~~------L~~l~l~~~ 186 (221)
+|+.|++++|......|..++.+++ |++|++.++
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 6777777775544444544454444 788888766
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.52 E-value=2.1e-14 Score=124.01 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=113.5
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP 102 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 102 (221)
++|++|+++++. .....+..+.++++|++|+++++ .+..+.| .+..+ ++|++|++++|.+...++..++.++
T Consensus 26 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSS----RINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTS----CCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc--cCccChhhhhcCCcccEEECCCC----CcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCC
Confidence 678888888886 44555667888888888888874 2233233 67777 8888888888888877766688888
Q ss_pred CCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcchhhccCCcCcEE
Q 045118 103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKL 181 (221)
Q Consensus 103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l 181 (221)
+|++|++++|.+.....+.. ++.+++|++|++++|..+..++ ..++.+++|++|++++|.--...|..++.+++|+++
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 88888888887765334444 6678888888888877556665 356778888888888865444456777888888888
Q ss_pred EccCCC
Q 045118 182 ELHWPQ 187 (221)
Q Consensus 182 ~l~~~~ 187 (221)
++..+.
T Consensus 178 ~l~~n~ 183 (549)
T 2z81_A 178 TLHLSE 183 (549)
T ss_dssp EEECSB
T ss_pred ecccCc
Confidence 887654
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=1.7e-13 Score=116.41 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=93.0
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce----e----eehhh----
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM----W----QLSRM---- 69 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~----~L~~L---- 69 (221)
++|++|..-.........++.+++|++|+++++. ...+ +.+..+++|++|+++++.-. + +|+.|
T Consensus 199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred CCCCEEEecCCcccccccccccCCCCEEECCCCC---cccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCC
Confidence 4555555332222222225667777777777664 2222 34556666666666653100 0 11111
Q ss_pred -----ccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce
Q 045118 70 -----ILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW 144 (221)
Q Consensus 70 -----lp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~ 144 (221)
++.+..+ ++|+.|++++|.+...+ .++.+++|+.|++++|.+.+. . . ...+++|+.|++++|. +.++
T Consensus 275 n~l~~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~--~-~-~~~l~~L~~L~l~~n~-l~~~ 346 (466)
T 1o6v_A 275 NQISNISPLAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDI--S-P-VSSLTKLQRLFFYNNK-VSDV 346 (466)
T ss_dssp SCCCCCGGGTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCC--G-G-GGGCTTCCEEECCSSC-CCCC
T ss_pred CccCccccccCC-CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCc--h-h-hccCccCCEeECCCCc-cCCc
Confidence 2234555 66666666666665433 355666667777766665442 1 1 3356677777777665 5554
Q ss_pred eeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 145 TMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 145 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+ .+..+++|+.|++++|. +..++. +..+++|+++++.+++
T Consensus 347 ~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 347 S-SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp G-GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred h-hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 2 45567777777777654 333332 6677777777776653
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.51 E-value=1.3e-13 Score=122.01 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=113.0
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMED 93 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~ 93 (221)
.+..++++++|++|+++++. .....|..++++++|++|+++++ .+.. +| .++.+ ++|++|++++|.+...
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~-l~~~~~~~l-~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQHN----ELSQ-LSDKTFAFC-TNLTELHLMSNSIQKI 112 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCSS----CCCC-CCTTTTTTC-TTCSEEECCSSCCCCC
T ss_pred CHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCCC----ccCc-cChhhhccC-CCCCEEECCCCccCcc
Confidence 44558888888888888876 55556777888888888888874 2233 44 47778 8999999999988877
Q ss_pred CchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC---CCCCCCccEEEecCCccccCc-c
Q 045118 94 PMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG---AGAMPKLESLILNPCAYLRKL-P 169 (221)
Q Consensus 94 ~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~---~~~l~~L~~L~l~~~~~l~~~-~ 169 (221)
++..++.+++|++|++++|.+... .+.. +..+++|++|+++++. ++.++.. ...+++|++|++++|. +..+ |
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 188 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSST-KLGT-QVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ-IKEFSP 188 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCC-CCCS-SSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC-CCCBCT
T ss_pred ChhHccccCCCCEEECCCCccccc-Cchh-hcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc-ccccCh
Confidence 666788899999999988877653 2333 5678899999998877 5555322 2245788999998854 4433 4
Q ss_pred hhhccCCcCcEEEccCC
Q 045118 170 EELWCIKSLCKLELHWP 186 (221)
Q Consensus 170 ~~~~~l~~L~~l~l~~~ 186 (221)
..+..+++|+++++..+
T Consensus 189 ~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp TGGGGSSEECEEECTTC
T ss_pred hhhhhhhhhhhhhcccc
Confidence 45666666666665544
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=2.2e-13 Score=115.63 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=84.8
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT 81 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~ 81 (221)
++|++|..-.......++++.+++|++|+++++. ...++ ++.+++|++|+++++ .+.. +| ++.+ ++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~~~--~~~l~~L~~L~Ls~N----~l~~-~~-~~~l-~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN---ITTLD--LSQNTNLTYLACDSN----KLTN-LD-VTPL-TKLT 109 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC---CSCCC--CTTCTTCSEEECCSS----CCSC-CC-CTTC-TTCC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCc---CCeEc--cccCCCCCEEECcCC----CCce-ee-cCCC-CcCC
Confidence 4555555333222222357777888888887775 22233 677777777777763 1122 22 4455 5666
Q ss_pred EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeee-------------------CCCCCCcccEEecccccccc
Q 045118 82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACV-------------------GCSSFSQLKILHLKSMLWLE 142 (221)
Q Consensus 82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~-------------------~~~~~~~L~~L~L~~~~~l~ 142 (221)
+|++++|.+...+ ++.+++|++|++++|.+.+ ++.. +...+++|+.|+++++. ++
T Consensus 110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~--l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~ 183 (457)
T 3bz5_A 110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE--IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-IT 183 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC--CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CC
T ss_pred EEECCCCcCCeec---CCCCCcCCEEECCCCccce--eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cc
Confidence 6666666555432 4555666666665555443 1110 02234444444444444 44
Q ss_pred ceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 143 EWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 143 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
.++ ++.+++|+.|++++| .++.++ ++.+++|++|++.++.
T Consensus 184 ~l~--l~~l~~L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred eec--cccCCCCCEEECcCC-cCCeec--cccCCCCCEEECcCCc
Confidence 433 344555555555552 233332 4556666666666543
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=2.6e-13 Score=120.13 Aligned_cols=166 Identities=22% Similarity=0.198 Sum_probs=111.4
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCc------ee----eehhh------------cc-
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGK------MW----QLSRM------------IL- 71 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~------~~----~L~~L------------lp- 71 (221)
.+..++.+++|+.|+++.+. ..+.++ ..+.++++|++|+++++.- .+ +|+.+ +|
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNE--IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSC--CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred ChhhhhCCCCCCEEeCCCCc--CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence 45667778888888888775 444444 5667777777777766310 00 11111 34
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCce-------eeeeCCCCCCcccEEeccccccccce
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERK-------LACVGCSSFSQLKILHLKSMLWLEEW 144 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------l~~~~~~~~~~L~~L~L~~~~~l~~~ 144 (221)
.+..+ ++|+.|++++|.+...+...++.+++|++|++++|.+.... .... +..+++|+.|+++++. ++.+
T Consensus 475 ~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~N~-l~~i 551 (680)
T 1ziw_A 475 PFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF-LKGLSHLHILNLESNG-FDEI 551 (680)
T ss_dssp TTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT-TTTCTTCCEEECCSSC-CCCC
T ss_pred ccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh-hcCCCCCCEEECCCCC-CCCC
Confidence 56677 88899999988888777667888888899998888765310 0112 4567788888888876 6666
Q ss_pred ee-CCCCCCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118 145 TM-GAGAMPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 187 (221)
Q Consensus 145 ~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~ 187 (221)
+. .++.+++|+.|++++ +.++.+|.. +..+++|++|++.++.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 54 356778888888876 456666654 4677777777777653
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=3.8e-15 Score=121.03 Aligned_cols=164 Identities=21% Similarity=0.191 Sum_probs=124.3
Q ss_pred ChhhcCCCCCccEEEEEecCCccccc-hhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecc-cCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSG-VSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNT-ELME 92 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~-~~~~ 92 (221)
.+..+..+++|++|+++++. .... ++..+..+++|++|+++++. +....+ .++.+ ++|++|++++| .+..
T Consensus 85 ~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~~~~~~L~~L~L~~~~----l~~~~~~~l~~~-~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 85 PLAEHFSPFRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSLEGLR----LSDPIVNTLAKN-SNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CCCSCCCCBCCCEEECTTCE--ECHHHHHHHHTTBCCCSEEECTTCB----CCHHHHHHHTTC-TTCSEEECTTCBSCCH
T ss_pred cchhhccCCCCCEEEccCCC--cCHHHHHHHHhhCCCCCEEeCcCcc----cCHHHHHHHhcC-CCCCEEECCCCCCCCH
Confidence 33446678999999999985 4444 78889999999999998841 121133 67778 99999999999 5653
Q ss_pred CC-chhhccCCCCcEEEecCC-ccCCceeeeeCCCCCC-cccEEeccccc-cc--cceeeCCCCCCCccEEEecCCcccc
Q 045118 93 DP-MPTLEKLPHLEVLKLKQN-SYLERKLACVGCSSFS-QLKILHLKSML-WL--EEWTMGAGAMPKLESLILNPCAYLR 166 (221)
Q Consensus 93 ~~-~~~l~~l~~L~~L~l~~~-~~~~~~l~~~~~~~~~-~L~~L~L~~~~-~l--~~~~~~~~~l~~L~~L~l~~~~~l~ 166 (221)
.. ...++.+++|++|++++| .+....++.. ...++ +|++|++++|. .+ ..++..++.+++|++|++++|..++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 22 234778999999999988 6654434444 56788 99999999985 24 3345555679999999999987554
Q ss_pred -CcchhhccCCcCcEEEccCCC
Q 045118 167 -KLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 167 -~~~~~~~~l~~L~~l~l~~~~ 187 (221)
..+..+..+++|++|++.+|.
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHHhCCCCCCEeeCCCCC
Confidence 456678899999999999985
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.50 E-value=2.3e-13 Score=116.90 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=59.0
Q ss_pred CcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118 3 NLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL 80 (221)
Q Consensus 3 ~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L 80 (221)
+|++|..-..... .+..++++++|++|+++++. .....|+.++++++|++|+++++ ++.. +|.. .+ ++|
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N----~l~~-lp~~-~l-~~L 92 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHN----KLVK-ISCH-PT-VNL 92 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSS----CCCE-EECC-CC-CCC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCc--cCCcChHHhhcccCCCEEecCCC----ceee-cCcc-cc-CCc
Confidence 4666653333222 44678888999999998886 55555778888888999988874 1122 3322 33 455
Q ss_pred cEEEeecccCCCCC-chhhccCCCCcEEEecCCc
Q 045118 81 TQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNS 113 (221)
Q Consensus 81 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~ 113 (221)
++|++++|.+...+ +..++.+++|++|++++|.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 55555555544321 2344444444444444443
No 77
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.3e-13 Score=106.47 Aligned_cols=129 Identities=22% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCC
Q 045118 50 HKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFS 128 (221)
Q Consensus 50 ~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~ 128 (221)
++|++|+++++ ++..+.| .+..+ ++|+.|++++|.+...+...++.+++|++|++++|.+.. ++...+..++
T Consensus 40 ~~L~~L~Ls~n----~i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDN----QITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLV 112 (229)
T ss_dssp TTCSEEECCSS----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCT
T ss_pred CCCCEEEcCCC----ccCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcch
Confidence 56666666653 2222123 45556 666666666666665554455666666666666666543 2211034566
Q ss_pred cccEEeccccccccceeeCCCCCCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 129 QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 129 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
+|+.|+++++. +..++..+..+++|+.|++++ +.+..++. .+..+++|+++++.+++
T Consensus 113 ~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNK-LTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSC-CCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCc-ccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 66666666665 556665556666677777666 34555543 35666667777766654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=4.4e-14 Score=113.88 Aligned_cols=155 Identities=20% Similarity=0.151 Sum_probs=80.7
Q ss_pred CCCccEEEEEecCCccccchhHhh--ccCCCCcEEEeeecCceeeehhhcc-----ccCcCCCCccEEEeecccCCCCCc
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSL--CKLHKLECLKLVNKGKMWQLSRMIL-----SEYKFPPSLTQLSLSNTELMEDPM 95 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~L~~Llp-----~l~~~~~~L~~L~l~~~~~~~~~~ 95 (221)
+++|++|+++++. ..+..|..+ .++++|++|+++++. +....+ .+..+ ++|++|++++|.+...+.
T Consensus 90 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~Ls~n~----i~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 90 YSRLKELTLEDLK--ITGTMPPLPLEATGLALSSLRLRNVS----WATGRSWLAELQQWLK-PGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp HSCCCEEEEESCC--CBSCCCCCSSSCCCBCCSSCEEESCC----CSSTTSSHHHHHTTBC-SCCCEEEEECCSSCCCCT
T ss_pred cCceeEEEeeCCE--eccchhhhhhhccCCCCCEEEeeccc----ccchhhhhHHHHhhhc-cCCCEEEeeCCCcchhhH
Confidence 3456666666664 444455554 566666666666531 111011 12234 666666666666655554
Q ss_pred hhhccCCCCcEEEecCCccCCc-ee--eeeCCCCCCcccEEeccccccccceeeC----CCCCCCccEEEecCCccccCc
Q 045118 96 PTLEKLPHLEVLKLKQNSYLER-KL--ACVGCSSFSQLKILHLKSMLWLEEWTMG----AGAMPKLESLILNPCAYLRKL 168 (221)
Q Consensus 96 ~~l~~l~~L~~L~l~~~~~~~~-~l--~~~~~~~~~~L~~L~L~~~~~l~~~~~~----~~~l~~L~~L~l~~~~~l~~~ 168 (221)
..++.+++|++|++++|.+.+. .+ ... .+.+++|++|++++|. ++.++.. ++.+++|++|++++|. +...
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 239 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALC-PHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRAT 239 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSC-TTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHh-hhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCcc
Confidence 5566666666666666654321 01 111 2456666666666665 4433221 2345666666666633 3333
Q ss_pred -chhhccC---CcCcEEEccCCC
Q 045118 169 -PEELWCI---KSLCKLELHWPQ 187 (221)
Q Consensus 169 -~~~~~~l---~~L~~l~l~~~~ 187 (221)
|..+..+ ++|++|++.++.
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSC
T ss_pred chhhHHhccCcCcCCEEECCCCC
Confidence 4444444 466666666543
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=9.2e-14 Score=105.58 Aligned_cols=131 Identities=24% Similarity=0.222 Sum_probs=101.8
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhcc
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEK 100 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 100 (221)
.++|++|+++++. .....+..+.++++|++|+++++ +++. +| .+..+ ++|++|++++|.+...+...++.
T Consensus 27 ~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGN----KLQS-LPNGVFNKL-TSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSS----CCCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEEcCCCc--cCcCChhhhcccccCcEEECCCC----ccCc-cChhhcCCC-CCcCEEECCCCcCCccCHhHhcC
Confidence 5689999999996 44444456789999999999884 2343 34 46788 99999999999998777667889
Q ss_pred CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCcc
Q 045118 101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAY 164 (221)
Q Consensus 101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~ 164 (221)
+++|++|++++|.+.. ++...+..+++|+.|+++++. +.+++.. +..+++|++|++++|+.
T Consensus 99 l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 99 LTQLKELALNTNQLQS--LPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCCCEEEcCCCcCcc--cCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe
Confidence 9999999999888765 332214678999999999987 7777654 56789999999998643
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=8e-14 Score=102.40 Aligned_cols=130 Identities=22% Similarity=0.188 Sum_probs=75.0
Q ss_pred CCCccEEEEEecCCccc-cchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 23 LPNVRTFRISGDLSYYH-SGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
.++|++|+++++. .. ..+|..+..+++|++|+++++ .+.. ++.+..+ ++|++|++++|.+....+..++.+
T Consensus 23 ~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINV----GLIS-VSNLPKL-PKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESS----CCCC-CSSCCCC-SSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCC----CCCC-hhhhccC-CCCCEEECcCCcCchHHHHHHhhC
Confidence 4667777777764 22 255666666777777777663 1222 2455556 677777777777665433445556
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee----CCCCCCCccEEEecCC
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM----GAGAMPKLESLILNPC 162 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~----~~~~l~~L~~L~l~~~ 162 (221)
++|++|++++|.+........ +..+++|+.|++++|. +..++. .+..+++|+.|++.+|
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGG-GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCEEeccCCccCcchhHHH-HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 777777776666554211123 4456666666666665 444433 3445666666666653
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=1.1e-13 Score=112.54 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=119.9
Q ss_pred CCcceeceecCCC-CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce---e--------eehhh
Q 045118 2 KNLIFISALHPSS-CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM---W--------QLSRM 69 (221)
Q Consensus 2 ~~L~~L~~~~~~~-~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~--------~L~~L 69 (221)
++|++|..-.... .++..+. ++|++|+++++. .....+..+.++++|++|+++++.-. . +|+.+
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR--IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC--CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCc--cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence 4566665322221 1343333 788888888875 33333345778888888888764110 0 22222
Q ss_pred -cc--ccC----cCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccc
Q 045118 70 -IL--SEY----KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLE 142 (221)
Q Consensus 70 -lp--~l~----~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~ 142 (221)
+. .+. .++++|+.|++++|.+...++..++.+++|+.|++++|.+... .+.. +..+++|+.|++++|. +.
T Consensus 178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~ 254 (332)
T 2ft3_A 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGS-LSFLPTLRELHLDNNK-LS 254 (332)
T ss_dssp BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTG-GGGCTTCCEEECCSSC-CC
T ss_pred ECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhH-hhCCCCCCEEECCCCc-Ce
Confidence 00 111 1126899999999999887767888999999999998887652 2223 5578999999999988 88
Q ss_pred ceeeCCCCCCCccEEEecCCccccCcchh-hcc------CCcCcEEEccCCC
Q 045118 143 EWTMGAGAMPKLESLILNPCAYLRKLPEE-LWC------IKSLCKLELHWPQ 187 (221)
Q Consensus 143 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~------l~~L~~l~l~~~~ 187 (221)
.++..++.+++|+.|++++| .++.++.. +.. .++++++++.+++
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 88888888999999999984 56666542 222 4678999999887
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2.3e-13 Score=105.18 Aligned_cols=130 Identities=20% Similarity=0.172 Sum_probs=108.6
Q ss_pred CCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhcc
Q 045118 23 LPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEK 100 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 100 (221)
.++|+.|+++++. .....+..+.++++|++|+++++ ++.. +| .+..+ ++|+.|++++|.+...+...++.
T Consensus 39 ~~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~N----~l~~-i~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 39 PTNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGSN----QLGA-LPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp CTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS----CCCC-CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCCC----CCCC-cChhhcccC-CCcCEEECCCCcCCccChhHhCc
Confidence 3889999999997 55556788999999999999985 2344 44 56888 99999999999999877667889
Q ss_pred CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCcc
Q 045118 101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAY 164 (221)
Q Consensus 101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~ 164 (221)
+++|++|++++|.+.. ++.. +..+++|+.|+++++. +..++. .+..+++|+.|++.+++.
T Consensus 111 l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTE--LPRG-IERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECCSSCCCS--CCTT-GGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred chhhCeEeccCCcccc--cCcc-cccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999999999998874 6655 6789999999999987 777764 467799999999999764
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=3.9e-14 Score=111.76 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=76.1
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhc
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLE 99 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~ 99 (221)
++.+++|+.|+++++. ...++ .+..+++|++|+++++ ++.. ++.+..+ ++|+.|++++|.+...+ .+.
T Consensus 37 ~~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~L~~N----~i~~-~~~l~~l-~~L~~L~L~~N~l~~l~--~~~ 104 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN---IQSLA-GMQFFTNLKELHLSHN----QISD-LSPLKDL-TKLEELSVNRNRLKNLN--GIP 104 (263)
T ss_dssp HHHHTTCSEEECTTSC---CCCCT-TGGGCTTCCEEECCSS----CCCC-CGGGTTC-SSCCEEECCSSCCSCCT--TCC
T ss_pred hhhcCcCcEEECcCCC---cccch-HHhhCCCCCEEECCCC----ccCC-ChhhccC-CCCCEEECCCCccCCcC--ccc
Confidence 4455666666666653 22333 4555666666666553 1222 2335555 56666666666655432 222
Q ss_pred cCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCc
Q 045118 100 KLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLC 179 (221)
Q Consensus 100 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 179 (221)
. ++|++|++++|.+.. ++ . +..+++|+.|++++|. +++++ .++.+++|+.|++++| .+..+ ..+..+++|+
T Consensus 105 ~-~~L~~L~L~~N~l~~--~~-~-l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELRD--TD-S-LIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVN 175 (263)
T ss_dssp C-SSCCEEECCSSCCSB--SG-G-GTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCC
T ss_pred c-CcccEEEccCCccCC--Ch-h-hcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCC
Confidence 2 566666666555543 22 2 4455666666666555 55443 3445566666666653 33333 3455556666
Q ss_pred EEEccCC
Q 045118 180 KLELHWP 186 (221)
Q Consensus 180 ~l~l~~~ 186 (221)
.|++.++
T Consensus 176 ~L~l~~N 182 (263)
T 1xeu_A 176 WIDLTGQ 182 (263)
T ss_dssp EEEEEEE
T ss_pred EEeCCCC
Confidence 6665543
No 84
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.45 E-value=1.3e-13 Score=120.56 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred CccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118 25 NVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP 102 (221)
Q Consensus 25 ~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 102 (221)
++++|++++|. .....+..|.++++|++|+++++ +++. +| .+..+ ++|++|++++|.+...+..+++.++
T Consensus 53 ~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N----~i~~-i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRC----EIQT-IEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTC----CCCE-ECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCC----cCCC-cChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCC
Confidence 45566666553 22222344555666666666553 1222 22 45555 5566666665555554444555555
Q ss_pred CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce--eeCCCCCCCccEEEecC
Q 045118 103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNP 161 (221)
Q Consensus 103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~ 161 (221)
+|++|++++|.+... .+.. ++.+++|++|+++++. +..+ +..++.+++|++|++++
T Consensus 125 ~L~~L~Ls~N~l~~l-~~~~-~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 125 SLQKLVAVETNLASL-ENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TCCEEECTTSCCCCS-TTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCCC-Chhh-hhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccC
Confidence 666666655554431 1112 3445555666555554 3322 33344455555555555
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=6e-13 Score=106.43 Aligned_cols=145 Identities=22% Similarity=0.255 Sum_probs=113.3
Q ss_pred CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118 1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL 80 (221)
Q Consensus 1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L 80 (221)
+++|++|............++++++|+.|+++++. ...++ .+.++++|++|+++++ .+.. ++.+..+ ++|
T Consensus 67 l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~-~l~~l~~L~~L~L~~n----~i~~-~~~l~~l-~~L 136 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK---VKDLS-SLKDLKKLKSLSLEHN----GISD-INGLVHL-PQL 136 (291)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC---CCCGG-GGTTCTTCCEEECTTS----CCCC-CGGGGGC-TTC
T ss_pred CCCCCEEEccCCccCCCcccccCCCCCEEECCCCc---CCCCh-hhccCCCCCEEECCCC----cCCC-ChhhcCC-CCC
Confidence 35677776443332322338999999999999995 34444 4899999999999985 2233 5677888 999
Q ss_pred cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118 81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN 160 (221)
Q Consensus 81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~ 160 (221)
+.|++++|.+... ..++.+++|+.|++++|.+... + . +..+++|+.|++++|. +++++ .+..+++|+.|+++
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~--~-~-l~~l~~L~~L~L~~N~-i~~l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V-P-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELF 208 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-G-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEE
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc--h-h-hcCCCccCEEECCCCc-CCCCh-hhccCCCCCEEECc
Confidence 9999999999865 5788999999999999987652 2 2 5578999999999997 77775 46779999999999
Q ss_pred CCc
Q 045118 161 PCA 163 (221)
Q Consensus 161 ~~~ 163 (221)
+|.
T Consensus 209 ~n~ 211 (291)
T 1h6t_A 209 SQE 211 (291)
T ss_dssp EEE
T ss_pred CCc
Confidence 854
No 86
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=3.1e-13 Score=103.79 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=45.4
Q ss_pred cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC
Q 045118 73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM 151 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l 151 (221)
+..+ ++|+.|++++|.+....+..++.+++|++|++++|.+.. ++..-+..+++|+.|+++++. +..+ +..+..+
T Consensus 52 ~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l 127 (220)
T 2v9t_B 52 FSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDL 127 (220)
T ss_dssp STTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCC
Confidence 3444 444444444444443333344444444444444444332 111102234444444444444 3333 2223344
Q ss_pred CCccEEEecCCccccCcch-hhccCCcCcEEEccCC
Q 045118 152 PKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWP 186 (221)
Q Consensus 152 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~ 186 (221)
++|+.|++++ +.+..++. .+..+++|+++++.++
T Consensus 128 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 128 HNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence 4445555444 22333322 2444445555555443
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.45 E-value=1.2e-12 Score=111.03 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=108.8
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCc-e--e----eehhh-----
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGK-M--W----QLSRM----- 69 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~--~----~L~~L----- 69 (221)
++|+.|..-...-... .++.+++|++|+++++. . ..++ ++++++|++|+++++.- . + +|+.|
T Consensus 64 ~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~--l-~~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-DLSQNTNLTYLACDSNK--L-TNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN 137 (457)
T ss_dssp TTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSC--C-SCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred CCCCEEEccCCcCCeE-ccccCCCCCEEECcCCC--C-ceee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence 4556665333222222 27778888888888875 2 2232 67778888888876410 0 0 11111
Q ss_pred -cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee
Q 045118 70 -IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM 146 (221)
Q Consensus 70 -lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~ 146 (221)
+. .++.+ ++|+.|++++|...... .++.+++|++|++++|.+.+ ++ ...+++|+.|+++++. ++.+
T Consensus 138 ~l~~l~l~~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~-l~~~-- 206 (457)
T 3bz5_A 138 TLTEIDVSHN-TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE--LD---VSQNKLLNRLNCDTNN-ITKL-- 206 (457)
T ss_dssp CCSCCCCTTC-TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC--CC---CTTCTTCCEEECCSSC-CSCC--
T ss_pred ccceeccccC-CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce--ec---cccCCCCCEEECcCCc-CCee--
Confidence 11 23444 56666666666332221 35567888888888777665 33 5578999999999988 7776
Q ss_pred CCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 147 GAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 147 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
.++.+++|+.|++++ +.+..+| ++.+++|++|++.++.
T Consensus 207 ~l~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 207 DLNQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCTTCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCSSC
T ss_pred ccccCCCCCEEECcC-CcccccC--ccccCCCCEEEeeCCc
Confidence 477899999999999 4567777 7889999999998865
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.44 E-value=4.9e-13 Score=116.08 Aligned_cols=103 Identities=21% Similarity=0.177 Sum_probs=59.8
Q ss_pred CCcceeceecCCCC--ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCC
Q 045118 2 KNLIFISALHPSSC--TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPS 79 (221)
Q Consensus 2 ~~L~~L~~~~~~~~--~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~ 79 (221)
++|++|..-..... .+..++++++|++|++++|. .....|+.+.++++|++|+++++ .++. +|.. .+ ++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l~~-lp~~-~l-~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDVSHN----RLQN-ISCC-PM-AS 122 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECTTS----CCCE-ECSC-CC-TT
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCHHHhCCCCCCCEEECCCC----cCCc-cCcc-cc-cc
Confidence 35666653333222 44678888999999998886 55555777888888888888874 1122 3322 34 45
Q ss_pred ccEEEeecccCCCCC-chhhccCCCCcEEEecCCc
Q 045118 80 LTQLSLSNTELMEDP-MPTLEKLPHLEVLKLKQNS 113 (221)
Q Consensus 80 L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~ 113 (221)
|++|++++|.+...+ +..++.+++|++|++++|.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 555555555544322 1344455555555554443
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5e-13 Score=102.61 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=50.2
Q ss_pred cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC
Q 045118 73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM 151 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l 151 (221)
+..+ ++|+.|++++|.+...+...++.+++|++|++++|.+... .+.. +..+++|+.|+++++. +..+ +..+..+
T Consensus 53 ~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 128 (220)
T 2v70_A 53 FKKL-PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKM-FKGLESLKTLMLRSNR-ITCVGNDSFIGL 128 (220)
T ss_dssp GGGC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGG-GTTCSSCCEEECTTSC-CCCBCTTSSTTC
T ss_pred hccC-CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhH-hcCCcCCCEEECCCCc-CCeECHhHcCCC
Confidence 3444 4555555555554443333444555555555554444331 1112 3344555555555544 3333 2334445
Q ss_pred CCccEEEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118 152 PKLESLILNPCAYLRKL-PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 152 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~ 187 (221)
++|+.|++++| .+..+ |..+..+++|++|++.+++
T Consensus 129 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 129 SSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 55555555542 23333 3444555555555555443
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=5.3e-13 Score=102.50 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=106.6
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLP 102 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 102 (221)
++++.|+++++. .....+..+.++++|++|+++++ ++..+.| .+..+ ++|++|++++|.+...+...++.++
T Consensus 32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N----~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNN----QISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSS----CCCEECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCC----cCCCcCHHHhhCC-cCCCEEECCCCcCCccCHhHccCCC
Confidence 689999999996 44444457899999999999985 2344235 78889 9999999999999988777788999
Q ss_pred CCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-CCCCCCCccEEEecCCcc
Q 045118 103 HLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAY 164 (221)
Q Consensus 103 ~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~ 164 (221)
+|++|++++|.+... .+.. +..+++|+.|+++++. ++.++. .+..+++|+.|++++++.
T Consensus 105 ~L~~L~L~~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 105 SLQLLLLNANKINCL-RVDA-FQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSCCCCC-CTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCCCCEe-CHHH-cCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 999999999987653 2334 6678999999999998 777754 367799999999999653
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=5.3e-13 Score=105.27 Aligned_cols=143 Identities=21% Similarity=0.248 Sum_probs=110.6
Q ss_pred CCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCcc
Q 045118 2 KNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLT 81 (221)
Q Consensus 2 ~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~ 81 (221)
++|+.|..-.......+.++.+++|++|+++++. ...++. +.++++|++|+++++ .+.. +|.+.. ++|+
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~---i~~~~~-l~~l~~L~~L~L~~N----~l~~-l~~~~~--~~L~ 109 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ---ISDLSP-LKDLTKLEELSVNRN----RLKN-LNGIPS--ACLS 109 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCSSCCEEECCSS----CCSC-CTTCCC--SSCC
T ss_pred CcCcEEECcCCCcccchHHhhCCCCCEEECCCCc---cCCChh-hccCCCCCEEECCCC----ccCC-cCcccc--Cccc
Confidence 4666666433333334478899999999999995 444555 899999999999985 2233 443332 7899
Q ss_pred EEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118 82 QLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP 161 (221)
Q Consensus 82 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 161 (221)
.|++++|.+... +.++.+++|+.|++++|.+.+ ++ . +..+++|+.|++++|. +.++ ..+..+++|+.|++++
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~-l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-M-LGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-G-GGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-H-HccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCC
Confidence 999999999864 468899999999999998876 33 4 6679999999999998 7777 5677899999999998
Q ss_pred Cc
Q 045118 162 CA 163 (221)
Q Consensus 162 ~~ 163 (221)
+.
T Consensus 182 N~ 183 (263)
T 1xeu_A 182 QK 183 (263)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=3e-13 Score=111.34 Aligned_cols=153 Identities=24% Similarity=0.206 Sum_probs=118.4
Q ss_pred CCccEEEEEecCCccccchhHhhc-cCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLC-KLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
.+++.|+++++. .....+..+. ++++|++|+++++ ++..+.+ .+..+ ++|+.|++++|.+...+...++.+
T Consensus 39 ~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSS----CCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCC----cCCccChhhccCC-CCCCEEECCCCcCCcCCHHHhCCC
Confidence 468999999996 4444445566 8999999999985 2344223 68888 999999999999987776678899
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCC----CCCCCccEEEecCCccccCcch-hhccCC
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGA----GAMPKLESLILNPCAYLRKLPE-ELWCIK 176 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~----~~l~~L~~L~l~~~~~l~~~~~-~~~~l~ 176 (221)
++|++|++++|.+... .+.. +..+++|+.|+++++. +..++... +.+++|+.|++++ +.+..+|. .+..++
T Consensus 112 ~~L~~L~L~~N~i~~~-~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 112 QALEVLLLYNNHIVVV-DRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLP 187 (361)
T ss_dssp TTCCEEECCSSCCCEE-CTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSC
T ss_pred cCCCEEECCCCcccEE-CHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhcc
Confidence 9999999999987642 2334 6678999999999988 88776553 5689999999998 56777764 567777
Q ss_pred c--CcEEEccCCC
Q 045118 177 S--LCKLELHWPQ 187 (221)
Q Consensus 177 ~--L~~l~l~~~~ 187 (221)
. ++.|++.+++
T Consensus 188 ~~~l~~l~l~~N~ 200 (361)
T 2xot_A 188 AWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHTTEECCSSC
T ss_pred HhhcceEEecCCC
Confidence 6 4889999865
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.7e-12 Score=98.51 Aligned_cols=129 Identities=26% Similarity=0.261 Sum_probs=91.8
Q ss_pred CCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCC
Q 045118 49 LHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSS 126 (221)
Q Consensus 49 l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~ 126 (221)
.++|++|+++++ ++.. ++ .+..+ ++|++|++++|.+...+...++.+++|++|++++|.+.. ++...+..
T Consensus 27 ~~~l~~L~l~~n----~l~~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETN----SLKS-LPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSS----CCCC-CCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTT
T ss_pred CCCCcEEEcCCC----ccCc-CChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcC
Confidence 357888888874 2233 33 46777 888888888888887665567788888888888887654 32221456
Q ss_pred CCcccEEeccccccccceeeC-CCCCCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118 127 FSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 187 (221)
Q Consensus 127 ~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~ 187 (221)
+++|+.|+++++. +..++.. ++.+++|++|++++| .+..++.. +..+++|+++++.+++
T Consensus 99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 7888888888877 6666543 566888888888884 45566543 6778888888888754
No 94
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=3.8e-12 Score=115.59 Aligned_cols=93 Identities=16% Similarity=0.293 Sum_probs=66.0
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
.+..++.+++|+.|+++++. .....+..+.++++|++|+++++ .+..+.| .+..+ ++|+.|++++|.+...+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSYN----LLGELYSSNFYGL-PKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCSSCCEEEEESC----CCSCCCSCSCSSC-TTCCEEECCSCCCCCCC
T ss_pred ChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCCCCCEEECCCC----CCCccCHHHhcCC-CCCCEEECCCCCCCccC
Confidence 45557788888888888886 55555677888888888888874 2223234 66677 77888888887777666
Q ss_pred chhhccCCCCcEEEecCCccC
Q 045118 95 MPTLEKLPHLEVLKLKQNSYL 115 (221)
Q Consensus 95 ~~~l~~l~~L~~L~l~~~~~~ 115 (221)
...++.+++|++|++++|.+.
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSC
T ss_pred hhhhcCCCCCCEEECCCCCCC
Confidence 556777777888887777654
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=8.2e-13 Score=112.98 Aligned_cols=165 Identities=20% Similarity=0.161 Sum_probs=112.7
Q ss_pred ChhhcCCC----CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce----e----eehhh---------cc---
Q 045118 16 TPDILGRL----PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM----W----QLSRM---------IL--- 71 (221)
Q Consensus 16 ~~~~l~~l----~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~----~L~~L---------lp--- 71 (221)
+|..+..+ ++|++|+++++. .....|..+.++++|++|+++++.-. + +|+.| +|
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~ 99 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP 99 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSC--CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECT
T ss_pred hHHHHHHhcccCCCccEEEeeCCc--CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCC
Confidence 45444444 499999999996 55566688999999999999884211 1 23322 11
Q ss_pred ---------------ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecc
Q 045118 72 ---------------SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLK 136 (221)
Q Consensus 72 ---------------~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~ 136 (221)
....+ ++|+.|++++|.+...++..++.+++|++|++++|.+.+...... ...+++|+.|+++
T Consensus 100 ~L~~L~L~~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls 177 (487)
T 3oja_A 100 SIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQ 177 (487)
T ss_dssp TCCEEECCSSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECT
T ss_pred CcCEEECcCCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecC
Confidence 01123 566666676666665555566778888888888777665322211 2257888888888
Q ss_pred ccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 137 SMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 137 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+|. +.+++.. ..+++|+.|++++ +.++.+|..+..+++|+.|++.++.
T Consensus 178 ~N~-l~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 178 YNF-IYDVKGQ-VVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp TSC-CCEEECC-CCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSC
T ss_pred CCc-ccccccc-ccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCc
Confidence 887 7766543 3488899999988 4567777778888999999998865
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=9.1e-14 Score=100.08 Aligned_cols=106 Identities=24% Similarity=0.240 Sum_probs=56.0
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee--eCCC
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT--MGAG 149 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~ 149 (221)
.+..+ ++|+.|++++|.+... ..++.+++|++|++++|.+... ++.. ...+++|+.|++++|. +++++ ..++
T Consensus 37 ~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~-~~~l~~L~~L~ls~N~-i~~~~~~~~~~ 110 (149)
T 2je0_A 37 LTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVL-AEKCPNLTHLNLSGNK-IKDLSTIEPLK 110 (149)
T ss_dssp CCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHH-HHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred HHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHH-hhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence 33445 5555555555555443 3455555566666655554432 2222 3335556666665555 44432 3445
Q ss_pred CCCCccEEEecCCccccCcch----hhccCCcCcEEEcc
Q 045118 150 AMPKLESLILNPCAYLRKLPE----ELWCIKSLCKLELH 184 (221)
Q Consensus 150 ~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~l~l~ 184 (221)
.+++|++|++++| .+..+|. .+..+++|++|++.
T Consensus 111 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 5666666666664 3444433 45667777776654
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.3e-12 Score=114.52 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=113.0
Q ss_pred CCCcceeceecCCCCChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCc
Q 045118 1 LKNLIFISALHPSSCTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSL 80 (221)
Q Consensus 1 L~~L~~L~~~~~~~~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L 80 (221)
|++|+.|............++.+++|+.|++++|. ...++ .+..+++|+.|+++++ .+.. ++.+..+ ++|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---l~~l~-~l~~l~~L~~L~Ls~N----~l~~-l~~l~~l-~~L 133 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK---IKDLS-SLKDLKKLKSLSLEHN----GISD-INGLVHL-PQL 133 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC---CCCCT-TSTTCTTCCEEECTTS----CCCC-CGGGGGC-TTC
T ss_pred CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC---CCCCh-hhccCCCCCEEEecCC----CCCC-CccccCC-Ccc
Confidence 45677776433332222338999999999999996 33333 7899999999999985 2233 5678888 999
Q ss_pred cEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEec
Q 045118 81 TQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILN 160 (221)
Q Consensus 81 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~ 160 (221)
+.|++++|.+... ..++.+++|+.|++++|.+... + . +..+++|+.|+|++|. +.+++ .+..+++|+.|+++
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~--~-~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V-P-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELF 205 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC--G-G-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECC
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc--h-h-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEcc
Confidence 9999999999865 5788999999999999987653 2 2 5578999999999997 77774 57779999999999
Q ss_pred CCc
Q 045118 161 PCA 163 (221)
Q Consensus 161 ~~~ 163 (221)
+|.
T Consensus 206 ~N~ 208 (605)
T 1m9s_A 206 SQE 208 (605)
T ss_dssp SEE
T ss_pred CCc
Confidence 864
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=6.1e-13 Score=97.62 Aligned_cols=129 Identities=25% Similarity=0.247 Sum_probs=103.8
Q ss_pred ccCCCCcEEEeeecCceeeeh--hhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeC
Q 045118 47 CKLHKLECLKLVNKGKMWQLS--RMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVG 123 (221)
Q Consensus 47 ~~l~~L~~L~l~~~~~~~~L~--~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~ 123 (221)
...++|++|+++++ .+. . +| .+..+ ++|+.|++++|.+... ..++.+++|++|++++|.+... ++..
T Consensus 21 ~~~~~L~~L~l~~n----~l~~~~-i~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~- 90 (168)
T 2ell_A 21 RTPAAVRELVLDNC----KSNDGK-IEGLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDML- 90 (168)
T ss_dssp SCTTSCSEEECCSC----BCBTTB-CSSCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHH-
T ss_pred CCcccCCEEECCCC----CCChhh-HHHHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHH-
Confidence 44589999999984 223 2 56 56788 9999999999998866 6788999999999999988664 4444
Q ss_pred CCCCCcccEEecccccccccee--eCCCCCCCccEEEecCCccccCcch----hhccCCcCcEEEccCCC
Q 045118 124 CSSFSQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLPE----ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 124 ~~~~~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~l~l~~~~ 187 (221)
...+++|+.|++++|. +++++ ..++.+++|+.|++++| .+..+|. .+..+++|++|++.++.
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4458999999999997 77765 56778999999999995 5566665 68899999999998875
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=9.8e-14 Score=115.07 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=54.9
Q ss_pred CCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccCCce----eeeeCCCCCCcccEEeccccccc-----cce
Q 045118 78 PSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYLERK----LACVGCSSFSQLKILHLKSMLWL-----EEW 144 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~----l~~~~~~~~~~L~~L~L~~~~~l-----~~~ 144 (221)
++|++|++++|.+.....+ .++.+++|++|++++|.+.... .+.. +..+++|+.|++++|. + ..+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCC-CCcHHHHHH
Confidence 3566666666655422222 3445566666666655544211 1102 3345666666666665 3 333
Q ss_pred eeCCCCCCCccEEEecCCccccC-----cchhh--ccCCcCcEEEccCCC
Q 045118 145 TMGAGAMPKLESLILNPCAYLRK-----LPEEL--WCIKSLCKLELHWPQ 187 (221)
Q Consensus 145 ~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~--~~l~~L~~l~l~~~~ 187 (221)
+..+..+++|++|++++|. +.. ++..+ +.+++|++|++.++.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 4444556666666666644 222 23333 236666777666654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=99.40 Aligned_cols=131 Identities=14% Similarity=0.139 Sum_probs=105.0
Q ss_pred CCccEEEEEecCCccccchh-HhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 24 PNVRTFRISGDLSYYHSGVS-KSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
..+++|+++++. .....+ ..+.++++|++|+++++ .+..+.+ .+..+ ++|+.|++++|.+...+...++.+
T Consensus 32 ~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 32 QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNN----KITDIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSS----CCCEECTTTTTTC-TTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCC----cCCEECHHHhCCC-CCCCEEECCCCccCccCHhHhcCC
Confidence 457899999996 333323 45889999999999985 2333233 68888 999999999999998887789999
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCCCCccEEEecCCcc
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAY 164 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~ 164 (221)
++|++|++++|.+... .+.. +..+++|+.|+++++. ++.+ +..+..+++|+.|++++++.
T Consensus 105 ~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 105 ESLKTLMLRSNRITCV-GNDS-FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCEEECTTSCCCCB-CTTS-STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCCCEEECCCCcCCeE-CHhH-cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999999988753 2334 6688999999999988 7777 56678899999999999764
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=1.2e-11 Score=101.27 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=75.5
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCC-CcccEEeccccccccceeeCCCC
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSF-SQLKILHLKSMLWLEEWTMGAGA 150 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~ 150 (221)
.+..+ ++|++|++++|.+...+...+....++..+++.++..... ++...+..+ ..++.|+++++. ++.++.....
T Consensus 99 ~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~ 175 (350)
T 4ay9_X 99 AFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNG-IQEIHNSAFN 175 (350)
T ss_dssp SBCCC-TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSC-CCEECTTSST
T ss_pred hhhhc-cccccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccc-ccCCChhhcc
Confidence 56667 7888888888877765544444555666676654332111 221102222 367788888877 7878766656
Q ss_pred CCCccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118 151 MPKLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 187 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~ 187 (221)
..+|+++.+.+++.++.+|.. +..+++|++|++.++.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 778889999888888888764 6788999999988764
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=6.4e-13 Score=110.14 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=55.2
Q ss_pred CCccEEEeecccCCCCC----ch-hhccCCCCcEEEecCCccCC---ceeeeeCCCCCCcccEEeccccccccce-----
Q 045118 78 PSLTQLSLSNTELMEDP----MP-TLEKLPHLEVLKLKQNSYLE---RKLACVGCSSFSQLKILHLKSMLWLEEW----- 144 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~----~~-~l~~l~~L~~L~l~~~~~~~---~~l~~~~~~~~~~L~~L~L~~~~~l~~~----- 144 (221)
++|+.|++++|.+.... .+ .+..+++|+.|++++|.+.. ..++.. +..+++|+.|++++|. +...
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~-i~~~~~~~l 264 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCL-LSARGAAAV 264 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCC-CCHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCC-CchhhHHHH
Confidence 56666666666554211 12 45556666666666665431 112323 4455666666666665 3332
Q ss_pred eeCC--CCCCCccEEEecCCccccC-----cchhh-ccCCcCcEEEccCCC
Q 045118 145 TMGA--GAMPKLESLILNPCAYLRK-----LPEEL-WCIKSLCKLELHWPQ 187 (221)
Q Consensus 145 ~~~~--~~l~~L~~L~l~~~~~l~~-----~~~~~-~~l~~L~~l~l~~~~ 187 (221)
+..+ +.+++|++|++++|. +.. +|..+ .++++|++|++.+++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2222 335666666666643 332 45444 446666666666543
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=1.1e-12 Score=94.37 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=86.1
Q ss_pred CCCccEEEEEecCCccc-cchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccC
Q 045118 23 LPNVRTFRISGDLSYYH-SGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKL 101 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l 101 (221)
.++|+.|+++++. .. +.+|..+..+++|++|+++++ .+.. ++.++.+ ++|++|++++|.+....+..++.+
T Consensus 16 ~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n----~l~~-~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINV----GLTS-IANLPKL-NKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTS----CCCC-CTTCCCC-TTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCC----CCCC-chhhhcC-CCCCEEECCCCcccchHHHHhhhC
Confidence 4677888888775 33 366667777888888888764 2233 3456666 788888888888776444556668
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee----CCCCCCCccEEEec
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM----GAGAMPKLESLILN 160 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~----~~~~l~~L~~L~l~ 160 (221)
++|++|++++|.+.....+.. +..+++|+.|++++|. +.+++. .++.+++|+.|+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~-~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGG-GGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCcCCChHHHHH-HhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888888887777665222234 5567788888888776 665543 35567777777664
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=1.3e-12 Score=96.70 Aligned_cols=131 Identities=13% Similarity=0.069 Sum_probs=82.7
Q ss_pred ccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCC
Q 045118 47 CKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSS 126 (221)
Q Consensus 47 ~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~ 126 (221)
.+.++|++|+++++ ++.. +|.+..++++|+.|++++|.+... ..++.+++|++|++++|.+.. ++..-+..
T Consensus 16 ~~~~~L~~L~l~~n----~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~ 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGY----KIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR--IGEGLDQA 86 (176)
T ss_dssp ECTTSCEEEECTTS----CCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE--ECSCHHHH
T ss_pred CCcCCceEEEeeCC----CCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc--cCcchhhc
Confidence 44566666666653 1222 344444424777777777776643 456677777777777776653 33210245
Q ss_pred CCcccEEeccccccccceee--CCCCCCCccEEEecCCccccCcchh----hccCCcCcEEEccCCCH
Q 045118 127 FSQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPEE----LWCIKSLCKLELHWPQP 188 (221)
Q Consensus 127 ~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~l~l~~~~~ 188 (221)
+++|+.|++++|. +.+++. .++.+++|+.|++++|+ +..+|.. +..+++|+.+++..++.
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6777777777776 566654 45667888888888743 4555653 78888899998888773
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=1.5e-11 Score=106.87 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCc---
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKL--- 154 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L--- 154 (221)
++|+.|++++|.+...+. .+++|++|++++|.+.. ++.. . ++|+.|++++|. ++.+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~--lp~l--~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~ 205 (571)
T 3cvr_A 140 ALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF--LPEL--P--ESLEALDVSTNL-LESLPA-VPV--RNHHS 205 (571)
T ss_dssp TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CCCC--C--TTCCEEECCSSC-CSSCCC-CC--------
T ss_pred ccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC--cchh--h--CCCCEEECcCCC-CCchhh-HHH--hhhcc
Confidence 677778887777765442 46788888887777655 3322 1 788999998887 777766 433 66
Q ss_pred ----cEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 155 ----ESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 155 ----~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+.|++++ +.++.+|..+..+++|+.|++.+++
T Consensus 206 ~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 206 EETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp --CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred cccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 9999998 5678899888889999999999987
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=2.2e-12 Score=106.12 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=104.9
Q ss_pred ChhhcC-CCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCC
Q 045118 16 TPDILG-RLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMED 93 (221)
Q Consensus 16 ~~~~l~-~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~ 93 (221)
.+..+. ++++|+.|++++|. .....+..+.++++|++|+++++ .+..+.+ .+..+ ++|+.|++++|.+...
T Consensus 55 ~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 55 RAEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSSN----HLHTLDEFLFSDL-QALEVLLLYNNHIVVV 127 (361)
T ss_dssp CTTSSSSCCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred ChhhhhhcccccCEEECCCCc--CCccChhhccCCCCCCEEECCCC----cCCcCCHHHhCCC-cCCCEEECCCCcccEE
Confidence 334466 89999999999996 44444567999999999999985 3344223 57888 9999999999999877
Q ss_pred CchhhccCCCCcEEEecCCccCCceeeeeCC---CCCCcccEEeccccccccceee-CCCCCCC--ccEEEecCCc
Q 045118 94 PMPTLEKLPHLEVLKLKQNSYLERKLACVGC---SSFSQLKILHLKSMLWLEEWTM-GAGAMPK--LESLILNPCA 163 (221)
Q Consensus 94 ~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~---~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~--L~~L~l~~~~ 163 (221)
++..++.+++|+.|++++|.+.. ++..-+ ..+++|+.|+++++. +..++. .+..++. ++.|++.+|+
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence 66789999999999999998876 333202 468999999999988 777753 3445665 4778888865
No 107
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=6.5e-13 Score=98.38 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=102.4
Q ss_pred hcCCCCCccEEEEEecCCccccchhHhhccC-CCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchh
Q 045118 19 ILGRLPNVRTFRISGDLSYYHSGVSKSLCKL-HKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPT 97 (221)
Q Consensus 19 ~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~ 97 (221)
.+..+++|+.|+++++. ...++. +..+ ++|++|+++++ .+.. ++.+..+ ++|+.|++++|.+...+...
T Consensus 14 ~~~~~~~L~~L~l~~n~---l~~i~~-~~~~~~~L~~L~Ls~N----~l~~-~~~l~~l-~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK---IPVIEN-LGATLDQFDAIDFSDN----EIRK-LDGFPLL-RRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSC---CCSCCC-GGGGTTCCSEEECCSS----CCCE-ECCCCCC-SSCCEEECCSSCCCEECSCH
T ss_pred hcCCcCCceEEEeeCCC---CchhHH-hhhcCCCCCEEECCCC----CCCc-ccccccC-CCCCEEECCCCcccccCcch
Confidence 35678899999999995 334444 4444 59999999985 2343 4677888 99999999999998766555
Q ss_pred hccCCCCcEEEecCCccCCceeee--eCCCCCCcccEEeccccccccceeeC----CCCCCCccEEEecCCc
Q 045118 98 LEKLPHLEVLKLKQNSYLERKLAC--VGCSSFSQLKILHLKSMLWLEEWTMG----AGAMPKLESLILNPCA 163 (221)
Q Consensus 98 l~~l~~L~~L~l~~~~~~~~~l~~--~~~~~~~~L~~L~L~~~~~l~~~~~~----~~~l~~L~~L~l~~~~ 163 (221)
++.+++|++|++++|.+.. ++. . +..+++|+.|++++|+ +..++.. ++.+++|+.|+++++.
T Consensus 84 ~~~l~~L~~L~L~~N~i~~--~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVE--LGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSCCCCC--GGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCCcCCc--chhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6899999999999998855 343 4 6678999999999998 6666543 6679999999999865
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=6.7e-11 Score=103.84 Aligned_cols=76 Identities=26% Similarity=0.193 Sum_probs=60.9
Q ss_pred CCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcE
Q 045118 101 LPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCK 180 (221)
Q Consensus 101 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 180 (221)
+++|+.|++++|.+.. ++ ..+++|+.|++++|. ++.++. .+++|+.|++++| .+..+|..+..+++|+.
T Consensus 220 ~~~L~~L~Ls~N~L~~--lp----~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS--LP----VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETT 288 (622)
T ss_dssp CTTCCEEECCSSCCSC--CC----CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCE
T ss_pred CCCCCEEEccCCccCc--CC----CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCE
Confidence 3677788887776654 33 246789999999886 777765 5789999999985 67789989999999999
Q ss_pred EEccCCC
Q 045118 181 LELHWPQ 187 (221)
Q Consensus 181 l~l~~~~ 187 (221)
|++.+++
T Consensus 289 L~L~~N~ 295 (622)
T 3g06_A 289 VNLEGNP 295 (622)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9999987
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=3.1e-11 Score=105.38 Aligned_cols=110 Identities=19% Similarity=0.151 Sum_probs=79.5
Q ss_pred cCcCCCCccEEEeecccCCC-CCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCC
Q 045118 73 EYKFPPSLTQLSLSNTELME-DPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGA 150 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~ 150 (221)
+..+ ++++.|++++|.... ..+..++.+++|++|++++|.+.+. .+.. +.++++|+.|+|++|. +..++ ..++.
T Consensus 465 ~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l-~~~~-f~~l~~L~~L~Ls~N~-l~~l~~~~~~~ 540 (635)
T 4g8a_A 465 FNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKC 540 (635)
T ss_dssp TTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTT-TTTCTTCCEEECTTSC-CCBCCCGGGTT
T ss_pred cccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc-ChHH-HcCCCCCCEEECCCCc-CCCCChhHHhC
Confidence 4445 778888888776432 3345677888999999988876542 2334 6678899999999887 77764 34677
Q ss_pred CCCccEEEecCCccccCc-chhhccC-CcCcEEEccCCC
Q 045118 151 MPKLESLILNPCAYLRKL-PEELWCI-KSLCKLELHWPQ 187 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~~-~~~~~~l-~~L~~l~l~~~~ 187 (221)
+++|+.|++++|. +..+ |..+.++ ++|++|++.++|
T Consensus 541 l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 541 LNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8999999999854 4444 5567777 679999998865
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=3.9e-13 Score=116.98 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=119.2
Q ss_pred CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecC-------------------cee----eehhh--------
Q 045118 21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKG-------------------KMW----QLSRM-------- 69 (221)
Q Consensus 21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------------~~~----~L~~L-------- 69 (221)
..+++|+.|+++.+ ....+|+.++++++|+.|+++++. +.+ +|+.|
T Consensus 346 ~~~~~L~~L~Ls~n---~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVE---KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHH---HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChh---hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 56777888888887 356788888888888888875431 000 11111
Q ss_pred --cc-------ccCcC-CCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccc
Q 045118 70 --IL-------SEYKF-PPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 70 --lp-------~l~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
++ .+..+ +..|+.|++++|.+...+ .++.+++|+.|++++|.+.. +|.. ++.+++|+.|++++|.
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA--LPPA-LAALRCLEVLQASDNA 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC--CCGG-GGGCTTCCEEECCSSC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCcccccc--cchh-hhcCCCCCEEECCCCC
Confidence 00 11111 146899999999998764 48899999999999998874 6666 8889999999999998
Q ss_pred cccceeeCCCCCCCccEEEecCCccccCc--chhhccCCcCcEEEccCCC
Q 045118 140 WLEEWTMGAGAMPKLESLILNPCAYLRKL--PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 140 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~l~l~~~~ 187 (221)
++++| .++.+++|+.|++++ +.++.+ |..++.+++|+.|++.+++
T Consensus 498 -l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 498 -LENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp -CCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred -CCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 88887 788899999999998 456766 8889999999999999875
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.22 E-value=9.7e-11 Score=99.28 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=20.5
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
++|++|+++++. ...+| .++++++|++|++++
T Consensus 131 ~~L~~L~L~~n~---l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 131 PLLEYLGVSNNQ---LEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCC---CCCCc-ccCCCCCCCEEECCC
Confidence 567777777764 23355 466777777777766
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=9.5e-14 Score=104.83 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=93.4
Q ss_pred ccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCce
Q 045118 39 HSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERK 118 (221)
Q Consensus 39 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 118 (221)
...+|..+.++++|++|+++++ .+.. +|.+..+ ++|+.|++++|.+...+ ..++.+++|++|++++|.+..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n----~l~~-l~~~~~l-~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~N~l~~-- 107 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN----NIEK-ISSLSGM-ENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIAS-- 107 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE----EESC-CCCHHHH-TTCCEEEEEEEEECSCS-SHHHHHHHCSEEEEEEEECCC--
T ss_pred HhhhhHHHhcCCCCCEEECCCC----CCcc-ccccccC-CCCCEEECCCCCccccc-chhhcCCcCCEEECcCCcCCc--
Confidence 3455668888888888888874 3344 5666777 88888888888887554 456667888888888887765
Q ss_pred eeeeCCCCCCcccEEeccccccccceee--CCCCCCCccEEEecCCccccCcch----------hhccCCcCcEEE
Q 045118 119 LACVGCSSFSQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPE----------ELWCIKSLCKLE 182 (221)
Q Consensus 119 l~~~~~~~~~~L~~L~L~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~----------~~~~l~~L~~l~ 182 (221)
++ . +..+++|+.|++++|. +.+++. .+..+++|+.|++++|......|. .+..+++|+.++
T Consensus 108 l~-~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 108 LS-G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HH-H-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CC-c-cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 33 3 5567888888888877 665543 456788888888888653222222 267788888886
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=1.2e-10 Score=95.23 Aligned_cols=176 Identities=20% Similarity=0.165 Sum_probs=108.8
Q ss_pred CcceeceecCCCC-Ch-hhcCCCCCccEEEEEecCC-c----------------------cccch-hHhhccCCCCcEEE
Q 045118 3 NLIFISALHPSSC-TP-DILGRLPNVRTFRISGDLS-Y----------------------YHSGV-SKSLCKLHKLECLK 56 (221)
Q Consensus 3 ~L~~L~~~~~~~~-~~-~~l~~l~~Lr~L~l~~~~~-~----------------------~~~~~-~~~l~~l~~L~~L~ 56 (221)
++++|..-..... ++ ..++++++|++|++++|.. . ....+ +..+.++++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 4566654333322 33 3477888888888887751 0 01112 34567777888888
Q ss_pred eeecCc-e------e---eehhh----------cc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCcc
Q 045118 57 LVNKGK-M------W---QLSRM----------IL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY 114 (221)
Q Consensus 57 l~~~~~-~------~---~L~~L----------lp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 114 (221)
++++.- . . ++..+ +| .+..++..++.|++++|.+...+...+ ...+|+.+.+.++..
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence 876310 0 0 11111 22 233332467778888888776543333 456788888865443
Q ss_pred CCceeee-eCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccC
Q 045118 115 LERKLAC-VGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHW 185 (221)
Q Consensus 115 ~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~ 185 (221)
... ++. . +..+++|+.|+++++. ++.+|. +.+..|++|.+.++..++.+| .+..+++|+.+++..
T Consensus 190 l~~-i~~~~-f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEE-LPNDV-FHGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCC-CCTTT-TTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccC-CCHHH-hccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 222 332 2 4567889999998887 787764 357888888888888888888 478889999998864
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.20 E-value=1.7e-10 Score=97.80 Aligned_cols=10 Identities=40% Similarity=0.381 Sum_probs=6.2
Q ss_pred CCCcEEEeee
Q 045118 50 HKLECLKLVN 59 (221)
Q Consensus 50 ~~L~~L~l~~ 59 (221)
++|++|++++
T Consensus 131 ~~L~~L~L~~ 140 (454)
T 1jl5_A 131 PLLEYLGVSN 140 (454)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEECcC
Confidence 4666666665
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=5.3e-11 Score=89.45 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=3.3
Q ss_pred CcCcEEEcc
Q 045118 176 KSLCKLELH 184 (221)
Q Consensus 176 ~~L~~l~l~ 184 (221)
++|+++++.
T Consensus 126 ~~L~~L~L~ 134 (193)
T 2wfh_A 126 SALSHLAIG 134 (193)
T ss_dssp TTCCEEECC
T ss_pred ccccEEEeC
Confidence 333333333
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=4.4e-11 Score=89.76 Aligned_cols=87 Identities=23% Similarity=0.201 Sum_probs=46.7
Q ss_pred cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce-eeCCCCC
Q 045118 73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW-TMGAGAM 151 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~l 151 (221)
++.+ ++|++|++++|.+....+..++.+++|++|++++|.+... .+.. +..+++|+.|+++++. +..+ +..++.+
T Consensus 50 ~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 125 (192)
T 1w8a_A 50 FGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKM-FLGLHQLKTLNLYDNQ-ISCVMPGSFEHL 125 (192)
T ss_dssp GGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSS-STTCTTCCEEECCSSC-CCEECTTSSTTC
T ss_pred cccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHH-hcCCCCCCEEECCCCc-CCeeCHHHhhcC
Confidence 4555 5666666666666554444555666666666665554431 1112 3445566666666555 4444 3344455
Q ss_pred CCccEEEecCCc
Q 045118 152 PKLESLILNPCA 163 (221)
Q Consensus 152 ~~L~~L~l~~~~ 163 (221)
++|++|++++++
T Consensus 126 ~~L~~L~L~~N~ 137 (192)
T 1w8a_A 126 NSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEeCCCC
Confidence 566666665543
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.19 E-value=5.3e-12 Score=106.65 Aligned_cols=107 Identities=25% Similarity=0.257 Sum_probs=50.4
Q ss_pred CCccEEEeecccCCCCCchhhc-----cCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEeccccccccce-----
Q 045118 78 PSLTQLSLSNTELMEDPMPTLE-----KLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHLKSMLWLEEW----- 144 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L~~~~~l~~~----- 144 (221)
++|++|++++|.+.......+. ..++|++|++++|.+.... ++.. +..+++|++|++++|. +.+.
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-l~~~~~~~l 247 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNK-LGDVGMAEL 247 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSB-CHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCc-CChHHHHHH
Confidence 4555555555544322222221 1345555555555443321 1112 2234566666666554 3322
Q ss_pred -eeCCCCCCCccEEEecCCccccC-----cchhhccCCcCcEEEccCCC
Q 045118 145 -TMGAGAMPKLESLILNPCAYLRK-----LPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 145 -~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~l~l~~~~ 187 (221)
+.....+++|++|++++| .++. ++..+..+++|++|++.++.
T Consensus 248 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 111223566666666664 3333 34445556666666666654
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=2.5e-11 Score=108.54 Aligned_cols=109 Identities=24% Similarity=0.229 Sum_probs=70.9
Q ss_pred ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCC
Q 045118 72 SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAM 151 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l 151 (221)
.+..+ ++|+.|++++|.+...+ ..+..+++|++|++++|.+.. ++.. +..+++|+.|+|++|. ++.+|..++.+
T Consensus 219 ~~~~l-~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 219 SKYDD-QLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTE--LPAE-IKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ---CC-CCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSC--CCGG-GGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred hhccC-CCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcc--cChh-hhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 45556 67777777777766444 344467777777777776652 5544 5567777777777766 66666666667
Q ss_pred CCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 152 PKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 152 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
++|+.|++++| .++.+|..++.+++|++|++.+++
T Consensus 293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 77777777763 456667667777777777776654
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.17 E-value=1.5e-10 Score=100.59 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=93.3
Q ss_pred CCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCC
Q 045118 24 PNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPH 103 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 103 (221)
++|+.|++++|. ...+| ..+++|++|+++++ ++.. +|. ++.+|+.|++++|.+...+. .+++
T Consensus 80 ~~L~~L~Ls~N~---l~~ip---~~l~~L~~L~Ls~N----~l~~-ip~---l~~~L~~L~Ls~N~l~~lp~----~l~~ 141 (571)
T 3cvr_A 80 PQITVLEITQNA---LISLP---ELPASLEYLDACDN----RLST-LPE---LPASLKHLDVDNNQLTMLPE----LPAL 141 (571)
T ss_dssp TTCSEEECCSSC---CSCCC---CCCTTCCEEECCSS----CCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred CCCCEEECcCCC---Ccccc---cccCCCCEEEccCC----CCCC-cch---hhcCCCEEECCCCcCCCCCC----cCcc
Confidence 678888888885 34556 45788888888874 2232 444 32488888888888876543 5788
Q ss_pred CcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcC-----
Q 045118 104 LEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSL----- 178 (221)
Q Consensus 104 L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L----- 178 (221)
|+.|++++|.+.. ++. .+++|+.|++++|. ++.++. ++ ++|+.|++++ +.++.+|. +.. +|
T Consensus 142 L~~L~Ls~N~l~~--lp~----~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 142 LEYINADNNQLTM--LPE----LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVST-NLLESLPA-VPV--RNHHSEE 207 (571)
T ss_dssp CCEEECCSSCCSC--CCC----CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCS-SCCSSCCC-CC----------
T ss_pred ccEEeCCCCccCc--CCC----cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcC-CCCCchhh-HHH--hhhcccc
Confidence 9999998887765 332 46789999998887 777766 44 8899999998 46677776 543 66
Q ss_pred --cEEEccCCC
Q 045118 179 --CKLELHWPQ 187 (221)
Q Consensus 179 --~~l~l~~~~ 187 (221)
++|++.++.
T Consensus 208 ~L~~L~Ls~N~ 218 (571)
T 3cvr_A 208 TEIFFRCRENR 218 (571)
T ss_dssp CCEEEECCSSC
T ss_pred cceEEecCCCc
Confidence 888888765
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.17 E-value=1.9e-11 Score=100.55 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=23.3
Q ss_pred hhcCCCC-CccEEEEEecCCccccchhHhhccC-----CCCcEEEeee
Q 045118 18 DILGRLP-NVRTFRISGDLSYYHSGVSKSLCKL-----HKLECLKLVN 59 (221)
Q Consensus 18 ~~l~~l~-~Lr~L~l~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~ 59 (221)
..+.+++ +|++|++++|. .....+..+..+ ++|++|++++
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNS--LGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHTCCTTCCEEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHhCCCceeEEECcCCC--CCHHHHHHHHHHHhccCCCccEEECcC
Confidence 4455666 67777777765 333334444433 6677777766
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.16 E-value=3.8e-10 Score=99.07 Aligned_cols=52 Identities=25% Similarity=0.191 Sum_probs=32.6
Q ss_pred CcccEEeccccccccceeeCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEccCCC
Q 045118 128 SQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 128 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~~~~ 187 (221)
++|+.|++++|. ++.++ ..+++|+.|++++| .++.+|. .+++|++|++.++.
T Consensus 221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 456666666654 55544 34567777777763 5556664 56677777777764
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=3.7e-11 Score=107.44 Aligned_cols=113 Identities=25% Similarity=0.253 Sum_probs=86.5
Q ss_pred chhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCcee
Q 045118 41 GVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKL 119 (221)
Q Consensus 41 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l 119 (221)
..+..+..+++|+.|+++++ .+.. +| .+..+ ++|+.|++++|.+...+ ..++.+++|++|++++|.+.. +
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n----~l~~-l~~~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~--l 285 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL----QIFN-ISANIFKY-DFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTS--L 285 (727)
T ss_dssp -------CCCCCCEEECTTS----CCSC-CCGGGGGC-CSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSS--C
T ss_pred cChhhhccCCCCcEEECCCC----CCCC-CChhhcCC-CCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCc--c
Confidence 45677888999999999874 2233 55 56678 89999999999988554 678889999999999988773 6
Q ss_pred eeeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecCCcc
Q 045118 120 ACVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 164 (221)
Q Consensus 120 ~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 164 (221)
|.. ++.+++|+.|+|++|. +..+|..++.+++|+.|++++|.-
T Consensus 286 p~~-~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 286 PAE-LGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSS-GGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred Chh-hcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 666 7788999999999887 788888888899999999998653
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=5.2e-12 Score=106.67 Aligned_cols=59 Identities=27% Similarity=0.258 Sum_probs=36.0
Q ss_pred CCcccEEecccccccccee-e----CCC-CCCCccEEEecCCcccc-----CcchhhccCCcCcEEEccCCC
Q 045118 127 FSQLKILHLKSMLWLEEWT-M----GAG-AMPKLESLILNPCAYLR-----KLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 127 ~~~L~~L~L~~~~~l~~~~-~----~~~-~l~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~l~l~~~~ 187 (221)
+++|+.|++++|. +.+.. . .+. ..++|++|++++|. ++ .+|..+..+++|++|++.+++
T Consensus 340 ~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 340 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 4666677766664 33321 1 111 25677888887753 33 456667778888888887765
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=3.5e-10 Score=84.78 Aligned_cols=106 Identities=24% Similarity=0.229 Sum_probs=87.7
Q ss_pred CCccEEEeecccCCCCCch-hhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCcc
Q 045118 78 PSLTQLSLSNTELMEDPMP-TLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLE 155 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~ 155 (221)
.+++.|++++|.+...+.. .++.+++|++|++++|.+.+. .+.. +..+++|+.|+++++. ++.++.. ++.+++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNA-FEGASHIQELQLGENK-IKEISNKMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTT-TTTCTTCCEEECCSCC-CCEECSSSSTTCTTCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhH-cCCcccCCEEECCCCc-CCccCHHHhcCCCCCC
Confidence 6899999999999876643 488999999999999988753 2445 7789999999999998 7877544 67899999
Q ss_pred EEEecCCccccCc-chhhccCCcCcEEEccCCC
Q 045118 156 SLILNPCAYLRKL-PEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 156 ~L~l~~~~~l~~~-~~~~~~l~~L~~l~l~~~~ 187 (221)
+|++++|. ++.+ |..+..+++|+++++.+++
T Consensus 106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred EEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999954 5544 6778899999999999875
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=4.4e-10 Score=84.41 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=97.3
Q ss_pred cEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCc
Q 045118 27 RTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLE 105 (221)
Q Consensus 27 r~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 105 (221)
+.++.+++ ....+|..+. ++|++|+++++ +++. +| .+..+ ++|+.|++++|.+...+...++.+++|+
T Consensus 13 ~~l~~~~~---~l~~ip~~~~--~~l~~L~L~~n----~i~~-ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNK---GLKVLPKGIP--RDVTELYLDGN----QFTL-VPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTTS---CCSSCCSCCC--TTCCEEECCSS----CCCS-CCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEcCCC---CCCcCCCCCC--CCCCEEECCCC----cCch-hHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 45666555 3456665443 68999999985 2343 66 78888 9999999999999988777899999999
Q ss_pred EEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCcc
Q 045118 106 VLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAY 164 (221)
Q Consensus 106 ~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~ 164 (221)
+|++++|.+... .+.. +..+++|+.|+++++. +..++.. +..+++|+.|++.+++.
T Consensus 82 ~L~Ls~N~l~~i-~~~~-f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 82 TLILSYNRLRCI-PPRT-FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp EEECCSSCCCBC-CTTT-TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EEECCCCccCEe-CHHH-hCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 999999987653 2223 6678999999999988 7877654 67799999999998653
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.8e-10 Score=100.19 Aligned_cols=120 Identities=23% Similarity=0.228 Sum_probs=94.4
Q ss_pred CCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcc
Q 045118 51 KLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQL 130 (221)
Q Consensus 51 ~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L 130 (221)
.|+.|+++++ .+.. +|.++.+ ++|+.|++++|.+...+ ..++.+++|+.|++++|.+.+ ++ . ++.+++|
T Consensus 442 ~L~~L~Ls~n----~l~~-lp~~~~l-~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~--lp-~-l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHK----DLTV-LCHLEQL-LLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN--VD-G-VANLPRL 510 (567)
T ss_dssp TCSEEECTTS----CCSS-CCCGGGG-TTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCC--CG-G-GTTCSSC
T ss_pred CceEEEecCC----CCCC-CcCcccc-ccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCC--Cc-c-cCCCCCC
Confidence 3445555542 2333 6778888 99999999999999664 689999999999999999876 56 5 7889999
Q ss_pred cEEeccccccccce--eeCCCCCCCccEEEecCCccccCcchh----hccCCcCcEEEc
Q 045118 131 KILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLPEE----LWCIKSLCKLEL 183 (221)
Q Consensus 131 ~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~l~l 183 (221)
+.|++++|. ++++ |..++.+++|+.|++++| .+...|.. +..+|+|+.|++
T Consensus 511 ~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 999999998 7877 778889999999999995 45555432 345888888753
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=3.3e-10 Score=83.63 Aligned_cols=106 Identities=28% Similarity=0.340 Sum_probs=52.4
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES 156 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~ 156 (221)
++|+.|++++|.+...+...++.+++|++|++++|.+.. ++...+..+++|+.|+++++. ++.++.. ++.+++|+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCE
Confidence 455555555555554443344555555555555554432 221102345555555555554 4444332 344555666
Q ss_pred EEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118 157 LILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 187 (221)
Q Consensus 157 L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~ 187 (221)
|++++| .++.+|.. +..+++|+++++.+++
T Consensus 105 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 105 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 666553 34444433 3455566666665544
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=5.4e-10 Score=82.49 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=94.6
Q ss_pred cEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCCC
Q 045118 27 RTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHL 104 (221)
Q Consensus 27 r~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 104 (221)
+.++.+.+. ...+|..+ .++|++|+++++ +++. +| .+..+ ++|++|++++|.+...+...++.+++|
T Consensus 10 ~~l~~~~~~---l~~~p~~~--~~~l~~L~l~~n----~l~~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 10 TEIRCNSKG---LTSVPTGI--PSSATRLELESN----KLQS-LPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKL 78 (177)
T ss_dssp TEEECCSSC---CSSCCTTC--CTTCSEEECCSS----CCCC-CCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEecCCC---CccCCCCC--CCCCcEEEeCCC----cccE-eCHHHhcCc-ccccEEECCCCcceEeChhHccCCCcc
Confidence 456666553 44555433 379999999984 2333 34 56888 999999999999998776678899999
Q ss_pred cEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEEEecCCcc
Q 045118 105 EVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAY 164 (221)
Q Consensus 105 ~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~ 164 (221)
++|++++|.+.. ++...+..+++|+.|+++++. ++.++.. +..+++|++|++++|+.
T Consensus 79 ~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 79 TILYLHENKLQS--LPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCCccc--cCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999998775 332214678999999999987 7878665 46799999999999654
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.09 E-value=3e-11 Score=99.36 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=57.3
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchh----HhhccCC-CCcEEEeeecCceeeehhhcc-cc----CcCCCCccEEEe
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVS----KSLCKLH-KLECLKLVNKGKMWQLSRMIL-SE----YKFPPSLTQLSL 85 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~L~~Llp-~l----~~~~~~L~~L~l 85 (221)
.+..+...++|++|+++++. .....+ ..+.+++ +|++|+++++. +....+ .+ ...+++|++|++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNS----LGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSC----GGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCC----CCHHHHHHHHHHHhccCCCccEEEC
Confidence 55556667779999999996 433333 7788898 99999999841 111101 11 111256666666
Q ss_pred ecccCCCCCchhh----ccC-CCCcEEEecCCccCC
Q 045118 86 SNTELMEDPMPTL----EKL-PHLEVLKLKQNSYLE 116 (221)
Q Consensus 86 ~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~ 116 (221)
++|.+.......+ ..+ ++|++|++++|.+..
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 6666654443322 233 566666666666543
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=1.7e-12 Score=97.96 Aligned_cols=129 Identities=21% Similarity=0.193 Sum_probs=99.2
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
++..++.+++|++|+++++. ...+| .+.++++|++|+++++ .+.. +| .+..+ ++|+.|++++|.+...
T Consensus 40 l~~~~~~l~~L~~L~ls~n~---l~~l~-~~~~l~~L~~L~l~~n----~l~~-l~~~~~~~-~~L~~L~L~~N~l~~l- 108 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN---IEKIS-SLSGMENLRILSLGRN----LIKK-IENLDAVA-DTLEELWISYNQIASL- 108 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE---ESCCC-CHHHHTTCCEEEEEEE----EECS-CSSHHHHH-HHCSEEEEEEEECCCH-
T ss_pred hhHHHhcCCCCCEEECCCCC---Ccccc-ccccCCCCCEEECCCC----Cccc-ccchhhcC-CcCCEEECcCCcCCcC-
Confidence 33488999999999999995 44466 8899999999999985 3344 56 55566 8999999999999864
Q ss_pred chhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceee-----------CCCCCCCccEEE
Q 045118 95 MPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTM-----------GAGAMPKLESLI 158 (221)
Q Consensus 95 ~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-----------~~~~l~~L~~L~ 158 (221)
+.++.+++|++|++++|.+........ +..+++|+.|++.+|+ +..... .+..+++|+.|+
T Consensus 109 -~~~~~l~~L~~L~l~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 109 -SGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -CccccCCCCCEEECCCCcCCchhHHHH-HhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 478889999999999988765211123 5679999999999987 433321 145688999887
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=1.9e-10 Score=100.01 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=57.0
Q ss_pred CCCCCccEEEEEecCCccccchhHhhc-cCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhh
Q 045118 21 GRLPNVRTFRISGDLSYYHSGVSKSLC-KLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTL 98 (221)
Q Consensus 21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l 98 (221)
..+++|++|+++++. ..+..+..+. .+++|++|+++++... .-.. ++ ....+ ++|++|++++|.+......++
T Consensus 102 ~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~-l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV--VTDDCLELIAKSFKNFKVLVLSSCEGF-STDG-LAAIAATC-RNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESCB--CCHHHHHHHHHHCTTCCEEEEESCEEE-EHHH-HHHHHHHC-TTCCEEECTTCEEECCCGGGG
T ss_pred HhCCCCCeEEeeCcE--EcHHHHHHHHHhCCCCcEEeCCCcCCC-CHHH-HHHHHHhC-CCCCEEeCcCCccCCcchHHH
Confidence 356778888887775 4444455554 5778888887752100 0000 22 22345 667777777666554333333
Q ss_pred c----cCCCCcEEEecCCc--cCCceeeeeCCCCCCcccEEecccc
Q 045118 99 E----KLPHLEVLKLKQNS--YLERKLACVGCSSFSQLKILHLKSM 138 (221)
Q Consensus 99 ~----~l~~L~~L~l~~~~--~~~~~l~~~~~~~~~~L~~L~L~~~ 138 (221)
. .+++|+.|+++.+. +....+... ...+++|+.|++.+|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l-~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHH-HHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHH-HHhCCCCcEEecCCC
Confidence 2 44566666665554 111111111 122456666666554
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.96 E-value=3.3e-10 Score=98.48 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=21.3
Q ss_pred CCCCccEEEEEecCCccccchhHhhccC--CCCcEEEeee
Q 045118 22 RLPNVRTFRISGDLSYYHSGVSKSLCKL--HKLECLKLVN 59 (221)
Q Consensus 22 ~l~~Lr~L~l~~~~~~~~~~~~~~l~~l--~~L~~L~l~~ 59 (221)
.+++|++|+++++. ..+..+..+... .+|++|++++
T Consensus 110 ~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI--VSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HCTTCCEEEEESCB--CCHHHHHHHHHHHGGGCCEEEEES
T ss_pred hCCCCCeEEeeccE--ecHHHHHHHHHhccccCcEEECcC
Confidence 57777777777764 434444444442 3377777765
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.92 E-value=5.2e-10 Score=97.25 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=75.7
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCce---------e----eehhh---------cc-ccCcC
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKM---------W----QLSRM---------IL-SEYKF 76 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---------~----~L~~L---------lp-~l~~~ 76 (221)
++++++|+.|+++++. ...++..+.++++|++|+++..... + +|+.+ +| .+..+
T Consensus 216 ~~~~~~L~~L~L~~~~---~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFE---ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHCTTCCEEECSSCB---GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HhhCCCCcEEeccCcc---HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 3456666666666652 3345566666666666666531000 0 11111 22 23334
Q ss_pred CCCccEEEeecccCCCCCc-hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccc----------cccccce-
Q 045118 77 PPSLTQLSLSNTELMEDPM-PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKS----------MLWLEEW- 144 (221)
Q Consensus 77 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~----------~~~l~~~- 144 (221)
++|++|++++|.+..... ..++.+++|+.|+++ +.+....++.. ...+++|++|++.+ |..+...
T Consensus 293 -~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 293 -AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp -GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred -CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH-HHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 566666666665432222 124556666666664 33332223222 23456666666663 4333321
Q ss_pred -eeCCCCCCCccEEEecCCccccCc-chhhcc-CCcCcEEEcc
Q 045118 145 -TMGAGAMPKLESLILNPCAYLRKL-PEELWC-IKSLCKLELH 184 (221)
Q Consensus 145 -~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~-l~~L~~l~l~ 184 (221)
......+++|++|++.. +.++.. +..+.. +++|++|++.
T Consensus 370 ~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEe
Confidence 11122366777777733 433322 223333 6777777775
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=2.2e-09 Score=88.34 Aligned_cols=170 Identities=19% Similarity=0.195 Sum_probs=110.6
Q ss_pred hcCCCCCccEEEEEecCCc---c----ccchhHhhccCCCCcEEEeeecCceeeehhhccccCcCCCCccEEEeecccCC
Q 045118 19 ILGRLPNVRTFRISGDLSY---Y----HSGVSKSLCKLHKLECLKLVNKGKMWQLSRMILSEYKFPPSLTQLSLSNTELM 91 (221)
Q Consensus 19 ~l~~l~~Lr~L~l~~~~~~---~----~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp~l~~~~~~L~~L~l~~~~~~ 91 (221)
.+.++++|+.|.+...... . ...+...+..+++|+.|+++++.. ++ ++.+. + ++|++|++..|.+.
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~--l~~~~-~-~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LS--IGKKP-R-PNLKSLEIISGGLP 206 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CB--CCSCB-C-TTCSEEEEECSBCC
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ce--ecccc-C-CCCcEEEEecCCCC
Confidence 3556899999998654210 0 124667778899999999988411 11 34433 6 89999999999886
Q ss_pred CCCchhhc--cCCCCcEEEecCC--ccCCce-e---e-eeCCCCCCcccEEeccccccccce---eeCCCCCCCccEEEe
Q 045118 92 EDPMPTLE--KLPHLEVLKLKQN--SYLERK-L---A-CVGCSSFSQLKILHLKSMLWLEEW---TMGAGAMPKLESLIL 159 (221)
Q Consensus 92 ~~~~~~l~--~l~~L~~L~l~~~--~~~~~~-l---~-~~~~~~~~~L~~L~L~~~~~l~~~---~~~~~~l~~L~~L~l 159 (221)
......++ .+|+|+.|+++.+ .+.++. + . ......||+|+.|++.+|...... ....+.+|+|++|++
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 55445554 7999999998542 221110 1 1 110235899999999888722111 111246899999999
Q ss_pred cCCccccC-----cchhhccCCcCcEEEccCCC--HHHHHHhhh
Q 045118 160 NPCAYLRK-----LPEELWCIKSLCKLELHWPQ--PELRQRLRA 196 (221)
Q Consensus 160 ~~~~~l~~-----~~~~~~~l~~L~~l~l~~~~--~~~~~~l~~ 196 (221)
+.| .+.. ++.++.++++|+.|++..|. ++....+.+
T Consensus 287 s~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 287 SAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 874 4443 34456788999999998775 444444443
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=5.2e-09 Score=76.85 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=44.9
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES 156 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~ 156 (221)
++|+.|++++|.+...++..++.+++|++|++++|.+.. ++...+..+++|+.|+++++. ++.++.. ++.+++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence 556666666666655544455566666666666555543 221103445666666666555 5555432 455666666
Q ss_pred EEecCC
Q 045118 157 LILNPC 162 (221)
Q Consensus 157 L~l~~~ 162 (221)
|+++++
T Consensus 107 L~L~~N 112 (170)
T 3g39_A 107 IWLLNN 112 (170)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 666654
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=1.9e-08 Score=74.09 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=56.8
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccE
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLES 156 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~ 156 (221)
++|+.|++++|.+...++..++.+++|++|++++|.+.. ++..-+..+++|+.|+++++. ++.++.. ++.+++|+.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCE
Confidence 677888888887777665667777788888887777654 332203467777777777776 6666544 566777777
Q ss_pred EEecCCc
Q 045118 157 LILNPCA 163 (221)
Q Consensus 157 L~l~~~~ 163 (221)
|++++++
T Consensus 110 L~L~~N~ 116 (174)
T 2r9u_A 110 IYLYNNP 116 (174)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 7777743
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=2.4e-08 Score=73.26 Aligned_cols=102 Identities=25% Similarity=0.243 Sum_probs=82.3
Q ss_pred CccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCCCCCccEE
Q 045118 79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGAMPKLESL 157 (221)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L 157 (221)
..+.++++++.+...+. .+ .+++++|++++|.+... .+.. +..+++|+.|+++++. ++.++.. +..+++|+.|
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~-~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKL-EPGV-FDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCC-CTTT-TTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCcc-Chhh-hcCcccCCEEECCCCC-cCccChhhccCCCCCCEE
Confidence 45789999999887652 33 48999999999988763 2334 6689999999999998 8888654 5789999999
Q ss_pred EecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 158 ILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 158 ~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
++++ +.++.+|. .+..+++|++|++.+++
T Consensus 84 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 84 SLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9999 56777766 48899999999999875
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.78 E-value=1.8e-08 Score=74.28 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=53.9
Q ss_pred cEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCc
Q 045118 27 RTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLE 105 (221)
Q Consensus 27 r~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 105 (221)
+.++++++. ...+|..+. ++|++|+++++ +++.+.| .+..+ ++|+.|++++|.+...+...++.+++|+
T Consensus 15 ~~l~~~~n~---l~~iP~~~~--~~L~~L~Ls~N----~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIR---LASVPAGIP--TDKQRLWLNNN----QITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SEEECCSSC---CSSCCSCCC--TTCSEEECCSS----CCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEEeCCCC---CCccCCCcC--CCCcEEEeCCC----CccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhh
Confidence 345555552 344454432 56666666653 2233223 45556 6666666666666655544455666666
Q ss_pred EEEecCCccCCceeee-eCCCCCCcccEEeccccc
Q 045118 106 VLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSML 139 (221)
Q Consensus 106 ~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~ 139 (221)
+|++++|.+.. ++. . +..+++|+.|++++++
T Consensus 85 ~L~L~~N~l~~--l~~~~-~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 85 QLDLNDNHLKS--IPRGA-FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EEECCSSCCCC--CCTTT-TTTCTTCSEEECCSSC
T ss_pred EEECCCCccce--eCHHH-hccccCCCEEEeCCCC
Confidence 66666665543 221 2 3445666666666655
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.78 E-value=9.1e-10 Score=95.70 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=50.7
Q ss_pred hccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccce--eeCCCCCCCccEEEecCCccccCc--chhhc
Q 045118 98 LEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKL--PEELW 173 (221)
Q Consensus 98 l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~ 173 (221)
+..+++|+.|++++ .+....+... ...+++|+.|++.+|. +.+. ......+++|+.|++++|.. ... ...+.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~ 503 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANAS 503 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHH
Confidence 34556666666643 3322212211 1126778888887776 4322 11113478999999998775 322 22345
Q ss_pred cCCcCcEEEccCCC
Q 045118 174 CIKSLCKLELHWPQ 187 (221)
Q Consensus 174 ~l~~L~~l~l~~~~ 187 (221)
.+++|++|++.+|+
T Consensus 504 ~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 504 KLETMRSLWMSSCS 517 (594)
T ss_dssp GGGGSSEEEEESSC
T ss_pred hCCCCCEEeeeCCC
Confidence 68899999999887
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=8e-08 Score=77.75 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=72.1
Q ss_pred CCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCccc-EEecccccccccee-eCCCCCCCc
Q 045118 78 PSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLK-ILHLKSMLWLEEWT-MGAGAMPKL 154 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~-~L~L~~~~~l~~~~-~~~~~l~~L 154 (221)
++|+.+++.+|.+...+..++..+++|+.+.+..| +.. ++. . +.++++|+ .+.+.+ .++.++ .++..+++|
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~--I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT--IGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce--ehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 78888998888888777778888889999988665 322 222 3 55677888 888876 366664 456678888
Q ss_pred cEEEecCCccccCcch-hhccCCcCcEEEc
Q 045118 155 ESLILNPCAYLRKLPE-ELWCIKSLCKLEL 183 (221)
Q Consensus 155 ~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l 183 (221)
+.+++.+ +.+..++. .+.++++|++++.
T Consensus 300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 8888876 55666654 5778888888764
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=5.1e-08 Score=79.35 Aligned_cols=91 Identities=23% Similarity=0.182 Sum_probs=62.7
Q ss_pred ChhhcCCCCCccEEEEEe-cCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc-ccCcCCCCccEEEeecccCCCC
Q 045118 16 TPDILGRLPNVRTFRISG-DLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMED 93 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~ 93 (221)
+|. +..+++|+.|++++ |. .....+..|.++++|+.|+++++ +|+.+.| .+..+ ++|+.|++++|.+...
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKS----GLRFVAPDAFHFT-PRLSRLNLSFNALESL 95 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSS----CCCEECTTGGGSC-SCCCEEECCSSCCSCC
T ss_pred cCC-CCCCCCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCC----ccceeCHHHhcCC-cCCCEEeCCCCcccee
Confidence 555 77888888888875 64 33333466788888888888774 3344233 56777 7888888888888776
Q ss_pred CchhhccCCCCcEEEecCCccC
Q 045118 94 PMPTLEKLPHLEVLKLKQNSYL 115 (221)
Q Consensus 94 ~~~~l~~l~~L~~L~l~~~~~~ 115 (221)
+...+..++ |+.|++.+|.+.
T Consensus 96 ~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSTTTCSCC-CCEEECCSSCCC
T ss_pred CHHHcccCC-ceEEEeeCCCcc
Confidence 655555555 888888777654
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=1.1e-09 Score=90.54 Aligned_cols=154 Identities=18% Similarity=0.118 Sum_probs=75.9
Q ss_pred CCccEEEEEecCCccccc----hhHhhcc-CCCCcEEEeeecCceeeehhh-cc-ccCcCCCCccEEEeecccCCCCCch
Q 045118 24 PNVRTFRISGDLSYYHSG----VSKSLCK-LHKLECLKLVNKGKMWQLSRM-IL-SEYKFPPSLTQLSLSNTELMEDPMP 96 (221)
Q Consensus 24 ~~Lr~L~l~~~~~~~~~~----~~~~l~~-l~~L~~L~l~~~~~~~~L~~L-lp-~l~~~~~~L~~L~l~~~~~~~~~~~ 96 (221)
++|++|+++++. .... +...+.. .++|++|+++++. +..- +. ....+ ++|+.|++++|.+...+..
T Consensus 72 ~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~L-~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 72 SSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLASCQ----LDPAGLRTLLPVF-LRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp TTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTTCC----CCHHHHHHTHHHH-HTEEEEECCSSCCCHHHHH
T ss_pred hhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecCCC----CCHHHHHHHHHHH-HhccHhhcCCCCCCHHHHH
Confidence 456777777665 2222 2222222 2577777776631 0100 11 11223 5666777777666543333
Q ss_pred hh-----ccCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEeccccccccce-----eeCCCCCCCccEEEecCCc
Q 045118 97 TL-----EKLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHLKSMLWLEEW-----TMGAGAMPKLESLILNPCA 163 (221)
Q Consensus 97 ~l-----~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~~l~~L~~L~l~~~~ 163 (221)
.+ ...++|++|++++|.+.... +... +...++|++|+|++|. +.+. ...+...++|+.|++++|.
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 33 23456777777666553311 1111 2345666777776665 3322 2223345566777776643
Q ss_pred ccc-----CcchhhccCCcCcEEEccCCC
Q 045118 164 YLR-----KLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 164 ~l~-----~~~~~~~~l~~L~~l~l~~~~ 187 (221)
++ .++..+...++|++|++.+++
T Consensus 223 -i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 -AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 22 122234455666777766654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=9.5e-08 Score=77.71 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=72.7
Q ss_pred ccchhHhhccCCCCcEEEeee-cCceeeehhhcc-ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCC
Q 045118 39 HSGVSKSLCKLHKLECLKLVN-KGKMWQLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLE 116 (221)
Q Consensus 39 ~~~~~~~l~~l~~L~~L~l~~-~~~~~~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 116 (221)
...+|. +..+++|++|++++ + .++.+.+ .+..+ ++|+.|++++|.+...++..++.+++|++|++++|.+..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n----~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQ----HLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCS----SCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred CCccCC-CCCCCCeeEEEccCCC----CCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce
Confidence 566888 99999999999985 4 3444233 68889 999999999999998777788999999999999998875
Q ss_pred ceeeeeCCCCCCcccEEeccccc
Q 045118 117 RKLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 117 ~~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
++..-+..++ |+.|++.+++
T Consensus 95 --~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 95 --LSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp --CCSTTTCSCC-CCEEECCSSC
T ss_pred --eCHHHcccCC-ceEEEeeCCC
Confidence 4432022333 9999998876
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.55 E-value=3.2e-08 Score=72.81 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=60.7
Q ss_pred CccEEEeecccCCCCCchhhccCCCCcEEEecCCc-cCCceeeeeCCCCC----CcccEEecccccccccee-eCCCCCC
Q 045118 79 SLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNS-YLERKLACVGCSSF----SQLKILHLKSMLWLEEWT-MGAGAMP 152 (221)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~----~~L~~L~L~~~~~l~~~~-~~~~~l~ 152 (221)
+|+.|++++|.++...+..++.+++|+.|++++|. +++..+.. +... ++|++|++++|..+++-. ..+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 78999999988877777778888888999888775 33333332 2222 468888888887666531 1234578
Q ss_pred CccEEEecCCccccCc
Q 045118 153 KLESLILNPCAYLRKL 168 (221)
Q Consensus 153 ~L~~L~l~~~~~l~~~ 168 (221)
+|++|++++|+.++..
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 8888888888777654
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=3.6e-07 Score=73.84 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=45.0
Q ss_pred CCCccEEEEEecCCc--------ccc---------chh-Hhhcc--------CCCCcEEEeeecCceeeehhhcc--ccC
Q 045118 23 LPNVRTFRISGDLSY--------YHS---------GVS-KSLCK--------LHKLECLKLVNKGKMWQLSRMIL--SEY 74 (221)
Q Consensus 23 l~~Lr~L~l~~~~~~--------~~~---------~~~-~~l~~--------l~~L~~L~l~~~~~~~~L~~Llp--~l~ 74 (221)
+++|+.|+++++... ... .+| ..|.+ +++|+++++.. +++. ++ .+.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-----~i~~-I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-----KIKN-IEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-----TCCE-ECTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-----cccc-hhHHHhh
Confidence 778888888887511 000 122 34556 77888877765 2233 34 566
Q ss_pred cCCCCccEEEeecccCCCCCchhhccCCCCcEEE
Q 045118 75 KFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLK 108 (221)
Q Consensus 75 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 108 (221)
.+ ++|+.+++..|.+...+..++..+.++..+.
T Consensus 122 ~~-~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 122 GC-DNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp TC-TTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred cC-cccceEEcCCCCccccchhhhcCCCceEEec
Confidence 66 7888888877765444444444444444443
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.26 E-value=1.2e-06 Score=72.00 Aligned_cols=152 Identities=15% Similarity=0.162 Sum_probs=93.0
Q ss_pred CCCcceeceecCCC-----------CChhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhh
Q 045118 1 LKNLIFISALHPSS-----------CTPDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRM 69 (221)
Q Consensus 1 L~~L~~L~~~~~~~-----------~~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L 69 (221)
+++|++|....... .....+..+++|++|.++++. . ..++. + .+++|++|++..+.-. -..
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~-l~l~~-~-~~~~L~~L~L~~~~l~--~~~- 209 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--N-LSIGK-K-PRPNLKSLEIISGGLP--DSV- 209 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--T-CBCCS-C-BCTTCSEEEEECSBCC--HHH-
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--C-ceecc-c-cCCCCcEEEEecCCCC--hHH-
Confidence 36788886432211 133446778999999999873 1 22333 3 3899999999863110 000
Q ss_pred cccc--CcCCCCccEEEeecc--cCCCC-Cc----hhh--ccCCCCcEEEecCCccCCce--eeeeCCCCCCcccEEecc
Q 045118 70 ILSE--YKFPPSLTQLSLSNT--ELMED-PM----PTL--EKLPHLEVLKLKQNSYLERK--LACVGCSSFSQLKILHLK 136 (221)
Q Consensus 70 lp~l--~~~~~~L~~L~l~~~--~~~~~-~~----~~l--~~l~~L~~L~l~~~~~~~~~--l~~~~~~~~~~L~~L~L~ 136 (221)
+..+ ..+ |+|+.|+++.+ ..... .. ..+ ..+|+|+.|.+.+|.+.... .... ...+++|+.|+|+
T Consensus 210 l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs 287 (362)
T 2ra8_A 210 VEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECC
T ss_pred HHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECC
Confidence 1222 367 89999998642 11111 11 122 25899999999887765321 1112 3458899999998
Q ss_pred ccccccce-----eeCCCCCCCccEEEecCCc
Q 045118 137 SMLWLEEW-----TMGAGAMPKLESLILNPCA 163 (221)
Q Consensus 137 ~~~~l~~~-----~~~~~~l~~L~~L~l~~~~ 163 (221)
.+. +.+. ......+++|+.|++++|.
T Consensus 288 ~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 288 AGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 776 5542 2222457999999999863
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=9.1e-07 Score=65.02 Aligned_cols=84 Identities=8% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCCcEEEecCCccCCceeeeeCCCCCCcccEEeccccccccceeeC-CCC----CCCccEEEecCCccccCcc-hhhccC
Q 045118 102 PHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWTMG-AGA----MPKLESLILNPCAYLRKLP-EELWCI 175 (221)
Q Consensus 102 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~----l~~L~~L~l~~~~~l~~~~-~~~~~l 175 (221)
.+|+.|+++++.+....+.. +..+++|+.|+|++|..+++.... +.. .++|++|++++|..+++-. ..+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 36999999999877655553 557999999999999877765211 222 3579999999999887543 347789
Q ss_pred CcCcEEEccCCC
Q 045118 176 KSLCKLELHWPQ 187 (221)
Q Consensus 176 ~~L~~l~l~~~~ 187 (221)
++|++|++.+|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999997
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.06 E-value=4.5e-05 Score=63.42 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=53.5
Q ss_pred ccCcCCCCccEEEeecccCC-----CCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEecccccccccee
Q 045118 72 SEYKFPPSLTQLSLSNTELM-----EDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWT 145 (221)
Q Consensus 72 ~l~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~ 145 (221)
.+..+ ++|+.+++.++... ..+..++..+++|+.+.+.. .... ++. . +.++++|+.+.+.+. ++.+.
T Consensus 266 aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~--I~~~a-F~~c~~L~~l~lp~~--l~~I~ 338 (401)
T 4fdw_A 266 AFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI--LGQGL-LGGNRKVTQLTIPAN--VTQIN 338 (401)
T ss_dssp TTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE--ECTTT-TTTCCSCCEEEECTT--CCEEC
T ss_pred HhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE--Ehhhh-hcCCCCccEEEECcc--ccEEc
Confidence 44445 67777776665543 23334566667777777642 2211 211 2 344566677666432 44442
Q ss_pred -eCCCCCCCccEEEecCCccccCcc-hhhccCC-cCcEEEccC
Q 045118 146 -MGAGAMPKLESLILNPCAYLRKLP-EELWCIK-SLCKLELHW 185 (221)
Q Consensus 146 -~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~-~L~~l~l~~ 185 (221)
.++..+ +|+.+.+.++ ....++ ..+..++ .+..+++-.
T Consensus 339 ~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 234445 6777777663 233332 2344453 456666543
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.93 E-value=6.6e-05 Score=62.41 Aligned_cols=159 Identities=11% Similarity=0.081 Sum_probs=95.7
Q ss_pred ChhhcCCCCCccEEEEEecCCccccchhH-hhccCCCCcEEEeeecCcee---------eehhh--------cc--ccCc
Q 045118 16 TPDILGRLPNVRTFRISGDLSYYHSGVSK-SLCKLHKLECLKLVNKGKMW---------QLSRM--------IL--SEYK 75 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~---------~L~~L--------lp--~l~~ 75 (221)
....+.+|++|+.+++..+. ...++. .+. ..+|+.+.+..+-+.+ +|+.+ ++ .+..
T Consensus 172 ~~~aF~~c~~L~~l~l~~n~---l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~ 247 (401)
T 4fdw_A 172 KEDIFYYCYNLKKADLSKTK---ITKLPASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE 247 (401)
T ss_dssp CSSTTTTCTTCCEEECTTSC---CSEECTTTTT-TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT
T ss_pred hHHHhhCcccCCeeecCCCc---ceEechhhEe-ecccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCcccccccc
Confidence 34568889999999887653 222222 223 3566666664321111 11111 22 2222
Q ss_pred CCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCc---eee-eeCCCCCCcccEEecccccccccee-eCCCC
Q 045118 76 FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLER---KLA-CVGCSSFSQLKILHLKSMLWLEEWT-MGAGA 150 (221)
Q Consensus 76 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~l~-~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~ 150 (221)
.+|+.+.+. +.+...+..++..+++|+.+.+..+..... .++ .. +.++++|+.+.+.+ .++.+. ..+..
T Consensus 248 --~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-F~~c~~L~~l~l~~--~i~~I~~~aF~~ 321 (401)
T 4fdw_A 248 --SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-LEGCPKLARFEIPE--SIRILGQGLLGG 321 (401)
T ss_dssp --CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT-TTTCTTCCEECCCT--TCCEECTTTTTT
T ss_pred --CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH-hhCCccCCeEEeCC--ceEEEhhhhhcC
Confidence 467777774 334545556788899999999877654311 121 13 55677889888873 366663 34566
Q ss_pred CCCccEEEecCCccccCcch-hhccCCcCcEEEccCCC
Q 045118 151 MPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~~~~ 187 (221)
+++|+.+.+.. .++.++. .+.++ +|+++++.++.
T Consensus 322 c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 322 NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence 78899999964 3666643 47778 99999998753
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=7.5e-07 Score=73.47 Aligned_cols=136 Identities=18% Similarity=0.108 Sum_probs=90.3
Q ss_pred CCCCcEEEeeecCcee-eehhhcc-ccCcCCCCccEEEeecccCCCCCchhhc-cCCCCcEEEecCCccCCceeeee-C-
Q 045118 49 LHKLECLKLVNKGKMW-QLSRMIL-SEYKFPPSLTQLSLSNTELMEDPMPTLE-KLPHLEVLKLKQNSYLERKLACV-G- 123 (221)
Q Consensus 49 l~~L~~L~l~~~~~~~-~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~l~~~-~- 123 (221)
+++|++|+++++.-.- .... +. .+...+++|+.|++++|.+.......+. .+++|+.|++++|.+........ .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~-l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTV-VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHH-HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHH-HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4789999998741100 0111 22 3333336999999999998754444433 46789999999998764322211 0
Q ss_pred C-CCCCcccEEeccccccccc-----eeeCCCCCCCccEEEecCCcccc-----CcchhhccCCcCcEEEccCCC
Q 045118 124 C-SSFSQLKILHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLR-----KLPEELWCIKSLCKLELHWPQ 187 (221)
Q Consensus 124 ~-~~~~~L~~L~L~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~l~l~~~~ 187 (221)
. ...+.|+.|++++|. +.+ +...+...++|++|++++|. +. .++..+...++|++|++.+|.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 1 346789999999997 543 23333568899999999965 33 234457788899999999986
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=2.4e-06 Score=63.40 Aligned_cols=83 Identities=16% Similarity=0.025 Sum_probs=37.4
Q ss_pred CCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccCCce---eeeeCCCCCCcccEEec--cccccccc-----
Q 045118 78 PSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYLERK---LACVGCSSFSQLKILHL--KSMLWLEE----- 143 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~~L~~L~L--~~~~~l~~----- 143 (221)
++|++|++++|.+...... .+...+.|++|++++|.+.... +... ....+.|++|++ .++. +.+
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~-i~~~g~~~ 142 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQP-LGNNVEME 142 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSSC-CCHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH-HHhCCCceEEEecCCCCC-CCHHHHHH
Confidence 5555555555555432211 2233355566666555544321 1111 223445666666 4343 222
Q ss_pred eeeCCCCCCCccEEEecCC
Q 045118 144 WTMGAGAMPKLESLILNPC 162 (221)
Q Consensus 144 ~~~~~~~l~~L~~L~l~~~ 162 (221)
+...+...+.|++|++++|
T Consensus 143 l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCcCEEeccCC
Confidence 1112223456667776664
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=5.8e-05 Score=59.19 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=15.2
Q ss_pred CccEEEecCCccccCcc-------hhhccCCcCcEEEcc
Q 045118 153 KLESLILNPCAYLRKLP-------EELWCIKSLCKLELH 184 (221)
Q Consensus 153 ~L~~L~l~~~~~l~~~~-------~~~~~l~~L~~l~l~ 184 (221)
+|+.|.+.+|+-...+| ..+..+|+|+.|+=.
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 45555555544322222 124556666666533
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.49 E-value=3.7e-05 Score=56.84 Aligned_cols=122 Identities=9% Similarity=-0.016 Sum_probs=82.8
Q ss_pred ChhhcCCCCCccEEEEEec-CC--ccccchhHhhccCCCCcEEEeeecCcee-eehhhccccCcCCCCccEEEeecccCC
Q 045118 16 TPDILGRLPNVRTFRISGD-LS--YYHSGVSKSLCKLHKLECLKLVNKGKMW-QLSRMILSEYKFPPSLTQLSLSNTELM 91 (221)
Q Consensus 16 ~~~~l~~l~~Lr~L~l~~~-~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~~~ 91 (221)
+...+...++|++|+++++ .. .....+...+...++|++|+++++.-.- ....+...+... ++|++|++++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcCC
Confidence 3445778899999999988 51 1234566777888999999999841100 001111145556 78999999999987
Q ss_pred CCC----chhhccCCCCcEEEe--cCCccCCcee---eeeCCCCCCcccEEeccccc
Q 045118 92 EDP----MPTLEKLPHLEVLKL--KQNSYLERKL---ACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 92 ~~~----~~~l~~l~~L~~L~l--~~~~~~~~~l---~~~~~~~~~~L~~L~L~~~~ 139 (221)
..+ ...+...+.|++|++ ++|.+..+.. ... +...+.|++|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 543 235667789999999 7787764322 222 3345789999998876
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.00013 Score=57.22 Aligned_cols=59 Identities=29% Similarity=0.396 Sum_probs=31.8
Q ss_pred CCccEEEeecccCCCCC--chhhccCCCCcEEEecCCccCCc-eeeeeCCCCCCcccEEeccccc
Q 045118 78 PSLTQLSLSNTELMEDP--MPTLEKLPHLEVLKLKQNSYLER-KLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 78 ~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
++|+.|++++|.+.... ...++.+++|+.|++++|.+.+. .+. . +..+ +|++|++.+|+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~-l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-K-IKGL-KLEELWLDGNS 231 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-G-GTTS-CCSEEECTTST
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-h-cccC-CcceEEccCCc
Confidence 56666666666665432 12344566666666666665542 111 1 2222 66666666666
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.97 E-value=0.0067 Score=49.89 Aligned_cols=143 Identities=18% Similarity=0.124 Sum_probs=76.0
Q ss_pred CCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhh
Q 045118 21 GRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTL 98 (221)
Q Consensus 21 ~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l 98 (221)
-..++|+.+.+.... ...-...+.+...|+.+.+..+.. . ++ .+... ..++.+......+. ...+
T Consensus 227 ~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~~-----~-i~~~~F~~~-~~l~~~~~~~~~i~---~~~F 293 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNKL-----R-IGGSLFYNC-SGLKKVIYGSVIVP---EKTF 293 (394)
T ss_dssp TTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTTC-----E-ECSCTTTTC-TTCCEEEECSSEEC---TTTT
T ss_pred cccCCCceEEECCCc---eecccccccccccceeEEcCCCcc-----e-eeccccccc-cccceeccCceeec---cccc
Confidence 345778888775542 222234566778888888866311 1 22 34444 66666655544322 2345
Q ss_pred ccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcch-hhccC
Q 045118 99 EKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWCI 175 (221)
Q Consensus 99 ~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l 175 (221)
..+.+|+.+.+..+ ... ++. . +.++.+|+.+.+.+ .++.+. .++..+.+|+.+.+.. .++.++. .+.+|
T Consensus 294 ~~~~~L~~i~l~~~-i~~--I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C 365 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKF--IGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGC 365 (394)
T ss_dssp TTCTTCCEEEECTT-CCE--ECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTC
T ss_pred cccccccccccccc-cce--echhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCC
Confidence 56667777776432 111 111 2 33456677666642 244442 2344566677776653 2444433 35667
Q ss_pred CcCcEEEcc
Q 045118 176 KSLCKLELH 184 (221)
Q Consensus 176 ~~L~~l~l~ 184 (221)
++|+++++.
T Consensus 366 ~~L~~i~lp 374 (394)
T 4fs7_A 366 INLKKVELP 374 (394)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEC
Confidence 777777664
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.68 E-value=0.12 Score=42.39 Aligned_cols=146 Identities=11% Similarity=0.022 Sum_probs=77.6
Q ss_pred hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCc
Q 045118 18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPM 95 (221)
Q Consensus 18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~ 95 (221)
..+.++..|+.+.+.... ..+........+|+.+.+.... .. ++ .+... .+++.+.+..+... ...
T Consensus 202 ~~F~~~~~L~~i~~~~~~----~~i~~~~~~~~~l~~i~ip~~~-----~~-i~~~~f~~~-~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSL----YYLGDFALSKTGVKNIIIPDSF-----TE-LGKSVFYGC-TDLESISIQNNKLR-IGG 269 (394)
T ss_dssp TTTTTCTTCCBCCCCTTC----CEECTTTTTTCCCCEEEECTTC-----CE-ECSSTTTTC-SSCCEEEECCTTCE-ECS
T ss_pred hhhccccccceeecCCCc----eEeehhhcccCCCceEEECCCc-----ee-ccccccccc-ccceeEEcCCCcce-eec
Confidence 345666777766554432 1112222334567777665421 11 22 34444 67777777655332 233
Q ss_pred hhhccCCCCcEEEecCCccCCceeeeeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcch-hhc
Q 045118 96 PTLEKLPHLEVLKLKQNSYLERKLACVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELW 173 (221)
Q Consensus 96 ~~l~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~ 173 (221)
..+..+..++.+......+.. .. +....+|+.+.+.+ .++.+. .++..+.+|+.+.+.. .++.++. .+.
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~~----~~-F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~ 340 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVPE----KT-FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR 340 (394)
T ss_dssp CTTTTCTTCCEEEECSSEECT----TT-TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT
T ss_pred cccccccccceeccCceeecc----cc-cccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhcc
Confidence 456667777777664332211 12 33556777777643 244452 2345567777777753 3555543 466
Q ss_pred cCCcCcEEEcc
Q 045118 174 CIKSLCKLELH 184 (221)
Q Consensus 174 ~l~~L~~l~l~ 184 (221)
+|.+|+.+.+.
T Consensus 341 ~c~~L~~i~lp 351 (394)
T 4fs7_A 341 GCTSLSNINFP 351 (394)
T ss_dssp TCTTCCEECCC
T ss_pred CCCCCCEEEEC
Confidence 77777777764
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.51 E-value=0.045 Score=44.50 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=61.8
Q ss_pred cCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceeee-eCCCCCCcccEEecccccccccee-eCCCC
Q 045118 73 EYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLAC-VGCSSFSQLKILHLKSMLWLEEWT-MGAGA 150 (221)
Q Consensus 73 l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~ 150 (221)
+... .+|+.+.+..+ +...+..++..+.+|+.+.+..+ ... ++. . +.++++|+.+.+.++. ++.+. ..+..
T Consensus 236 f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~--i~~~a-F~~c~~L~~i~l~~~~-i~~I~~~aF~~ 308 (379)
T 4h09_A 236 FYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT--VPYLL-CSGCSNLTKVVMDNSA-IETLEPRVFMD 308 (379)
T ss_dssp TTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE--ECTTT-TTTCTTCCEEEECCTT-CCEECTTTTTT
T ss_pred ccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-cee--ccccc-cccccccccccccccc-cceehhhhhcC
Confidence 3444 67777777654 33344456667777888777432 111 221 2 4456788888876554 55553 34556
Q ss_pred CCCccEEEecCCccccCcch-hhccCCcCcEEEcc
Q 045118 151 MPKLESLILNPCAYLRKLPE-ELWCIKSLCKLELH 184 (221)
Q Consensus 151 l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~l~l~ 184 (221)
+.+|+.+.+.. .++.+.. .+.+|++|+++.+-
T Consensus 309 c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 309 CVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 77888888753 3555543 46778888887763
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.44 E-value=0.015 Score=40.21 Aligned_cols=39 Identities=33% Similarity=0.514 Sum_probs=30.8
Q ss_pred CCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCcc
Q 045118 76 FPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSY 114 (221)
Q Consensus 76 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 114 (221)
+|++|++|++++|.+...+...+..+++|+.|++.+|.+
T Consensus 29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 456788888888888877767778888888888877754
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.08 E-value=0.054 Score=44.00 Aligned_cols=127 Identities=11% Similarity=0.082 Sum_probs=70.3
Q ss_pred hhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCc
Q 045118 18 DILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPM 95 (221)
Q Consensus 18 ~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~ 95 (221)
..+..+.+|+.+.+... ....-...+.+..+|+.+.+..+ ++. ++ .+... .+|+.+.+..+ +...+.
T Consensus 211 ~~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-----v~~-I~~~aF~~~-~~l~~i~l~~~-i~~i~~ 279 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-----VTS-IGSFLLQNC-TALKTLNFYAK-VKTVPY 279 (379)
T ss_dssp TTTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-----CCE-ECTTTTTTC-TTCCEEEECCC-CSEECT
T ss_pred cccccccccceeeeccc---eeEEccccccCCccceEEEcCCC-----ccE-eCcccccee-ehhcccccccc-ceeccc
Confidence 34556777887776544 22233345667778888777542 222 22 44455 67777777543 333444
Q ss_pred hhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEec
Q 045118 96 PTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILN 160 (221)
Q Consensus 96 ~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~ 160 (221)
.++..+++|+.+.+..+.... ++ .. +.++.+|+.+.+.. .++.+. .++..+.+|+.+.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~--I~~~a-F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIET--LEPRV-FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCE--ECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccccce--ehhhh-hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 466677777777775443321 21 12 44556777777642 244452 234455666666654
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.08 E-value=0.047 Score=44.75 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=74.0
Q ss_pred HhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCCchhhccCCCCcEEEecCCccCCceee-
Q 045118 44 KSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDPMPTLEKLPHLEVLKLKQNSYLERKLA- 120 (221)
Q Consensus 44 ~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~- 120 (221)
..+.+..+|+.+.+..+ +.. ++ .+... ++|+.+.+.. .+...+..++..+.+|+.+.+..+ ... +.
T Consensus 259 ~aF~~c~~L~~i~lp~~-----~~~-I~~~aF~~c-~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~--I~~ 327 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-----VVS-IGTGAFMNC-PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQ--ILD 327 (394)
T ss_dssp TTTTTCSSCCEEECCTT-----CCE-ECTTTTTTC-TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE--ECT
T ss_pred ceeeecccccEEecccc-----cce-ecCcccccc-cccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccE--ehH
Confidence 45677788888888652 122 33 45556 8888888863 444455567888899999998543 211 21
Q ss_pred eeCCCCCCcccEEecccccccccee-eCCCCCCCccEEEecCCccccCcchhhccCCcCcEEEcc
Q 045118 121 CVGCSSFSQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWCIKSLCKLELH 184 (221)
Q Consensus 121 ~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~l~l~ 184 (221)
.. +.++.+|+.+.+.. .++.+. .++..+.+|+.+.+.+... .+ ..+..+..|+.+.+.
T Consensus 328 ~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 328 DA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp TT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HH-HTCBCCCCC------
T ss_pred hH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--eh-hhhhccCCCCEEEeC
Confidence 13 45677888888853 255553 3466788899998886421 11 245667777777664
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.74 E-value=0.094 Score=42.93 Aligned_cols=127 Identities=9% Similarity=0.152 Sum_probs=79.9
Q ss_pred hhhcCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeeecCceeeehhhcc--ccCcCCCCccEEEeecccCCCCC
Q 045118 17 PDILGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVNKGKMWQLSRMIL--SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 17 ~~~l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~Llp--~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
..++..+++|+.+.+... ....-...+.+.++|+.+.+.. ++.. ++ .+..+ .+|+.+.+..+ ++..+
T Consensus 258 ~~aF~~c~~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~-----~i~~-I~~~aF~~c-~~L~~i~lp~~-v~~I~ 326 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDS---VVSIGTGAFMNCPALQDIEFSS-----RITE-LPESVFAGC-ISLKSIDIPEG-ITQIL 326 (394)
T ss_dssp TTTTTTCSSCCEEECCTT---CCEECTTTTTTCTTCCEEECCT-----TCCE-ECTTTTTTC-TTCCEEECCTT-CCEEC
T ss_pred cceeeecccccEEecccc---cceecCcccccccccccccCCC-----cccc-cCceeecCC-CCcCEEEeCCc-ccEeh
Confidence 345778999999987655 2333345678889999999865 2233 44 56667 89999999754 45455
Q ss_pred chhhccCCCCcEEEecCCccCCceee-eeCCCCCCcccEEeccccccccceeeCCCCCCCccEEEecC
Q 045118 95 MPTLEKLPHLEVLKLKQNSYLERKLA-CVGCSSFSQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP 161 (221)
Q Consensus 95 ~~~l~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 161 (221)
..++..+.+|+.+.+..+ ... +. .+ +.++++|+.+.+.+.. ..+ ..+.....|+.+.+..
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~--I~~~a-F~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTK--IPESA-FSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCB--CCGGG-GTTCTTCCEEEESSCH--HHH-HTCBCCCCC-------
T ss_pred HhHhhCCCCCCEEEECcc-cCE--EhHhH-hhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeCC
Confidence 568889999999999543 221 21 23 5578899999887654 112 2334456666666543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.90 E-value=0.98 Score=30.78 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=15.6
Q ss_pred CccEEEecCCccccCcchh-hccCCcCcEEEccCCC
Q 045118 153 KLESLILNPCAYLRKLPEE-LWCIKSLCKLELHWPQ 187 (221)
Q Consensus 153 ~L~~L~l~~~~~l~~~~~~-~~~l~~L~~l~l~~~~ 187 (221)
+|++|++++ +.++.+|.+ +..+++|++|++.+++
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 344445444 334444332 3445555555555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.26 E-value=0.4 Score=35.47 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=35.6
Q ss_pred hhHhhccCCCCcEEEeeec-Ccee-eehhhccccCcCCCCccEEEeecccCCCCCch----hhccCCCCcEEEecCCccC
Q 045118 42 VSKSLCKLHKLECLKLVNK-GKMW-QLSRMILSEYKFPPSLTQLSLSNTELMEDPMP----TLEKLPHLEVLKLKQNSYL 115 (221)
Q Consensus 42 ~~~~l~~l~~L~~L~l~~~-~~~~-~L~~Llp~l~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~ 115 (221)
+...+.+-+.|++|+++++ .-.- -.+.+...+..- +.|+.|++++|.+...... ++..=+.|+.|++++|.+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344455566777777541 1000 001111133434 5677777777766532222 2334456666776666654
Q ss_pred C
Q 045118 116 E 116 (221)
Q Consensus 116 ~ 116 (221)
.
T Consensus 112 ~ 112 (197)
T 1pgv_A 112 P 112 (197)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.31 E-value=2.7 Score=31.01 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=69.7
Q ss_pred cCCCCCccEEEEEec-C--CccccchhHhhccCCCCcEEEeeecCcee-eehhhcc-ccCcCCCCccEEEeecccCCCCC
Q 045118 20 LGRLPNVRTFRISGD-L--SYYHSGVSKSLCKLHKLECLKLVNKGKMW-QLSRMIL-SEYKFPPSLTQLSLSNTELMEDP 94 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~L~~Llp-~l~~~~~~L~~L~l~~~~~~~~~ 94 (221)
+..-+.|++|+++++ . ......+.+.+..-..|++|+++++.-.- --+. +. .+..= +.|++|++++|.+...+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a-lA~aL~~N-~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG-LIELIETS-PSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT-HHHHHHHC-SSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHH-HHHHHhcC-CccCeEecCCCcCCHHH
Confidence 445678999999875 3 11234566777878999999998741000 0000 11 23334 68999999999987544
Q ss_pred ch----hhccCCCCcEEEecCCcc--CCc----eeeeeCCCCCCcccEEeccccc
Q 045118 95 MP----TLEKLPHLEVLKLKQNSY--LER----KLACVGCSSFSQLKILHLKSML 139 (221)
Q Consensus 95 ~~----~l~~l~~L~~L~l~~~~~--~~~----~l~~~~~~~~~~L~~L~L~~~~ 139 (221)
.. ++..-+.|++|+++++.. .++ .+... ...-+.|+.|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEeccCCC
Confidence 33 344456799999975432 121 11112 2234678888886543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.52 E-value=43 Score=21.32 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=16.0
Q ss_pred cCCCCCccEEEEEecCCccccchhHhhccCCCCcEEEeee
Q 045118 20 LGRLPNVRTFRISGDLSYYHSGVSKSLCKLHKLECLKLVN 59 (221)
Q Consensus 20 l~~l~~Lr~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 59 (221)
+.+|++|+++.|-.. ....-...|.+..+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~---v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN---IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT---SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc---hheEcHHHHhccCCccEEEEcC
Confidence 445555555544433 1222223344444454444443
Done!