Query 045120
Match_columns 374
No_of_seqs 264 out of 2341
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.4E-51 1.6E-55 419.9 25.6 347 15-368 11-444 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-38 4.1E-43 294.5 11.8 239 127-368 1-283 (287)
3 PLN03210 Resistant to P. syrin 100.0 6.9E-28 1.5E-32 260.5 19.7 237 120-366 182-465 (1153)
4 PRK00411 cdc6 cell division co 98.9 3.6E-08 7.7E-13 95.7 16.3 183 121-305 29-256 (394)
5 TIGR03015 pepcterm_ATPase puta 98.9 8E-08 1.7E-12 88.2 17.0 161 142-306 51-240 (269)
6 PF01637 Arch_ATPase: Archaeal 98.9 1.1E-08 2.4E-13 91.3 9.1 175 124-303 1-233 (234)
7 PRK04841 transcriptional regul 98.7 4.3E-07 9.3E-12 97.5 16.0 178 118-306 10-227 (903)
8 TIGR02928 orc1/cdc6 family rep 98.6 1.5E-06 3.3E-11 83.4 16.7 179 121-301 14-243 (365)
9 PF05729 NACHT: NACHT domain 98.5 1.3E-06 2.8E-11 73.6 10.8 127 142-273 8-163 (166)
10 cd01128 rho_factor Transcripti 98.5 4.3E-07 9.3E-12 81.9 7.8 83 142-225 24-115 (249)
11 TIGR00635 ruvB Holliday juncti 98.4 5.1E-06 1.1E-10 77.8 13.3 173 122-306 4-203 (305)
12 PRK09376 rho transcription ter 98.4 9.1E-07 2E-11 83.6 7.9 82 142-224 177-267 (416)
13 PRK00080 ruvB Holliday junctio 98.3 1.3E-05 2.8E-10 75.9 14.3 176 120-306 23-224 (328)
14 PRK13342 recombination factor 98.3 6.3E-06 1.4E-10 80.4 11.3 160 121-304 11-196 (413)
15 PF13401 AAA_22: AAA domain; P 98.3 3.3E-06 7.2E-11 68.4 7.5 84 142-225 12-99 (131)
16 PTZ00202 tuzin; Provisional 98.1 0.00049 1.1E-08 66.1 19.3 95 117-220 257-368 (550)
17 TIGR02903 spore_lon_C ATP-depe 98.1 0.00053 1.2E-08 70.1 20.4 184 120-306 152-397 (615)
18 COG2256 MGS1 ATPase related to 98.0 8.8E-05 1.9E-09 69.7 12.1 109 142-273 56-176 (436)
19 TIGR00767 rho transcription te 98.0 2.4E-05 5.2E-10 74.4 8.6 83 142-225 176-267 (415)
20 COG1474 CDC6 Cdc6-related prot 97.9 9.8E-05 2.1E-09 70.5 11.5 182 122-306 17-240 (366)
21 PRK06893 DNA replication initi 97.9 7.9E-05 1.7E-09 66.7 10.1 130 142-301 47-200 (229)
22 PF13191 AAA_16: AAA ATPase do 97.9 4.3E-05 9.4E-10 65.6 8.1 39 123-161 1-51 (185)
23 PRK12323 DNA polymerase III su 97.8 0.00029 6.4E-09 71.0 13.6 179 120-303 14-224 (700)
24 PRK06645 DNA polymerase III su 97.8 0.00037 8.1E-09 69.2 14.2 174 121-301 20-226 (507)
25 PRK11331 5-methylcytosine-spec 97.8 9.3E-05 2E-09 71.6 9.5 102 122-225 175-284 (459)
26 PRK07003 DNA polymerase III su 97.8 0.00049 1.1E-08 70.4 14.3 174 120-303 14-220 (830)
27 PRK14961 DNA polymerase III su 97.8 0.00056 1.2E-08 65.6 14.0 171 121-301 15-217 (363)
28 PRK14962 DNA polymerase III su 97.8 0.00039 8.5E-09 68.7 12.9 165 120-306 12-221 (472)
29 COG2909 MalT ATP-dependent tra 97.8 0.00038 8.3E-09 71.2 12.9 239 121-371 18-317 (894)
30 PRK05564 DNA polymerase III su 97.7 0.00068 1.5E-08 63.7 13.7 161 122-305 4-191 (313)
31 PTZ00112 origin recognition co 97.7 0.00041 8.9E-09 71.7 12.6 183 121-306 754-984 (1164)
32 PF05496 RuvB_N: Holliday junc 97.7 0.00012 2.7E-09 64.1 7.6 171 119-302 21-219 (233)
33 PRK14963 DNA polymerase III su 97.7 0.00062 1.4E-08 67.8 13.6 176 121-301 13-214 (504)
34 PRK14949 DNA polymerase III su 97.7 0.00076 1.7E-08 70.3 14.0 164 121-303 15-219 (944)
35 PRK13341 recombination factor 97.7 0.00028 6.1E-09 73.1 10.9 155 119-297 25-210 (725)
36 PF14516 AAA_35: AAA-like doma 97.7 0.0011 2.4E-08 62.7 14.0 178 121-306 10-241 (331)
37 PF05621 TniB: Bacterial TniB 97.6 0.0033 7.1E-08 57.8 15.9 156 142-302 69-259 (302)
38 PRK09112 DNA polymerase III su 97.6 0.0025 5.3E-08 60.7 15.8 181 118-306 19-242 (351)
39 PLN03025 replication factor C 97.6 0.0012 2.7E-08 62.1 13.4 168 121-304 12-201 (319)
40 cd00009 AAA The AAA+ (ATPases 97.6 0.00046 1E-08 56.1 9.3 49 125-175 1-58 (151)
41 PRK04195 replication factor C 97.6 0.00094 2E-08 66.6 12.5 159 120-300 12-198 (482)
42 KOG2227 Pre-initiation complex 97.6 0.005 1.1E-07 59.2 16.4 186 119-305 147-373 (529)
43 PRK12402 replication factor C 97.5 0.0017 3.7E-08 61.5 13.5 178 121-301 14-223 (337)
44 PRK14960 DNA polymerase III su 97.5 0.0021 4.6E-08 65.1 14.4 172 120-301 13-216 (702)
45 PRK14958 DNA polymerase III su 97.5 0.0023 5E-08 63.9 14.0 163 120-301 14-217 (509)
46 PRK14951 DNA polymerase III su 97.5 0.0021 4.7E-08 65.3 13.9 175 120-301 14-222 (618)
47 PRK14964 DNA polymerase III su 97.5 0.0034 7.4E-08 62.1 14.9 163 120-301 11-214 (491)
48 COG3903 Predicted ATPase [Gene 97.5 0.00014 3.1E-09 68.6 5.0 155 142-306 22-191 (414)
49 PRK14957 DNA polymerase III su 97.5 0.0034 7.4E-08 63.0 14.8 166 120-304 14-221 (546)
50 PRK14956 DNA polymerase III su 97.4 0.001 2.2E-08 65.2 10.5 170 120-299 16-217 (484)
51 PRK08691 DNA polymerase III su 97.4 0.0023 5.1E-08 65.3 13.3 163 120-301 14-217 (709)
52 PRK00440 rfc replication facto 97.4 0.0044 9.5E-08 58.1 14.6 162 121-301 16-200 (319)
53 PRK07471 DNA polymerase III su 97.4 0.00064 1.4E-08 65.0 8.9 181 119-306 16-240 (365)
54 PRK07994 DNA polymerase III su 97.4 0.0035 7.6E-08 64.0 14.5 175 120-304 14-220 (647)
55 KOG2543 Origin recognition com 97.4 0.00095 2E-08 62.5 9.4 179 121-306 5-228 (438)
56 TIGR01242 26Sp45 26S proteasom 97.3 0.0016 3.5E-08 62.5 10.6 157 119-298 119-328 (364)
57 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.0016 3.5E-08 57.9 9.7 149 127-305 22-202 (226)
58 KOG2028 ATPase related to the 97.3 0.0019 4.1E-08 60.2 9.9 113 142-273 170-294 (554)
59 PF13173 AAA_14: AAA domain 97.3 0.00022 4.8E-09 57.6 3.5 104 142-265 10-127 (128)
60 TIGR02397 dnaX_nterm DNA polym 97.3 0.0069 1.5E-07 57.8 14.4 165 120-304 12-218 (355)
61 PRK07940 DNA polymerase III su 97.2 0.012 2.5E-07 57.0 15.3 86 213-305 117-214 (394)
62 PRK09111 DNA polymerase III su 97.2 0.0079 1.7E-07 61.2 14.5 177 119-302 21-231 (598)
63 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0061 1.3E-07 64.7 14.3 140 121-273 186-363 (852)
64 PRK05896 DNA polymerase III su 97.2 0.0085 1.8E-07 60.5 14.3 177 120-306 14-223 (605)
65 PRK14969 DNA polymerase III su 97.2 0.0059 1.3E-07 61.4 13.3 156 121-299 15-215 (527)
66 PRK14955 DNA polymerase III su 97.2 0.0046 9.9E-08 60.1 11.9 177 121-299 15-223 (397)
67 PRK14950 DNA polymerase III su 97.2 0.008 1.7E-07 61.4 14.0 172 121-301 15-218 (585)
68 COG3899 Predicted ATPase [Gene 97.1 0.0062 1.3E-07 64.7 13.3 217 123-344 1-314 (849)
69 PRK08727 hypothetical protein; 97.1 0.0052 1.1E-07 55.1 10.9 129 142-300 49-200 (233)
70 PRK07764 DNA polymerase III su 97.1 0.01 2.3E-07 62.5 14.6 170 121-300 14-217 (824)
71 PRK14954 DNA polymerase III su 97.1 0.011 2.3E-07 60.4 13.5 179 121-302 15-227 (620)
72 PRK14959 DNA polymerase III su 97.0 0.01 2.2E-07 60.2 12.5 175 121-305 15-222 (624)
73 TIGR02639 ClpA ATP-dependent C 97.0 0.0038 8.2E-08 65.5 9.8 138 122-273 182-358 (731)
74 PRK14970 DNA polymerase III su 97.0 0.014 3E-07 56.1 13.0 166 120-304 15-210 (367)
75 CHL00095 clpC Clp protease ATP 97.0 0.0045 9.7E-08 65.8 10.3 139 122-272 179-353 (821)
76 PRK14952 DNA polymerase III su 97.0 0.017 3.8E-07 58.5 13.8 169 121-299 12-214 (584)
77 TIGR00678 holB DNA polymerase 96.9 0.031 6.7E-07 48.2 13.6 40 253-300 148-187 (188)
78 PRK14971 DNA polymerase III su 96.9 0.035 7.5E-07 56.9 15.5 159 121-299 16-217 (614)
79 PRK03992 proteasome-activating 96.9 0.011 2.3E-07 57.4 11.2 162 121-305 130-345 (389)
80 PRK14953 DNA polymerase III su 96.8 0.054 1.2E-06 53.9 15.9 158 121-301 15-217 (486)
81 PRK14087 dnaA chromosomal repl 96.8 0.014 3E-07 57.6 11.4 148 142-305 149-320 (450)
82 TIGR03689 pup_AAA proteasome A 96.8 0.005 1.1E-07 61.2 8.2 147 119-274 179-379 (512)
83 PRK09087 hypothetical protein; 96.7 0.0052 1.1E-07 54.8 7.4 53 248-302 141-193 (226)
84 PRK12608 transcription termina 96.7 0.012 2.7E-07 55.8 10.0 92 132-224 121-231 (380)
85 smart00382 AAA ATPases associa 96.7 0.006 1.3E-07 48.9 6.8 82 142-226 10-91 (148)
86 PRK05563 DNA polymerase III su 96.6 0.079 1.7E-06 53.8 15.9 171 120-300 14-216 (559)
87 PRK08118 topology modulation p 96.6 0.00089 1.9E-08 56.8 1.6 28 142-169 9-37 (167)
88 PF04665 Pox_A32: Poxvirus A32 96.6 0.0061 1.3E-07 54.5 6.9 29 142-172 21-49 (241)
89 PRK07133 DNA polymerase III su 96.6 0.043 9.2E-07 56.7 13.8 170 120-304 16-220 (725)
90 PF08423 Rad51: Rad51; InterP 96.6 0.035 7.6E-07 50.5 11.7 81 142-223 46-143 (256)
91 PHA02544 44 clamp loader, smal 96.6 0.027 5.9E-07 52.8 11.4 40 119-158 18-67 (316)
92 PRK08084 DNA replication initi 96.6 0.12 2.6E-06 46.4 15.0 51 248-300 155-205 (235)
93 PRK06647 DNA polymerase III su 96.6 0.059 1.3E-06 54.6 14.3 172 120-301 14-217 (563)
94 PRK08181 transposase; Validate 96.5 0.077 1.7E-06 48.6 13.6 64 142-223 114-177 (269)
95 PRK08451 DNA polymerase III su 96.5 0.11 2.4E-06 52.1 15.5 163 121-303 13-217 (535)
96 PRK10865 protein disaggregatio 96.4 0.013 2.9E-07 62.3 9.4 38 121-158 177-223 (857)
97 TIGR02880 cbbX_cfxQ probable R 96.4 0.023 4.9E-07 52.6 9.8 22 253-274 188-209 (284)
98 PRK14965 DNA polymerase III su 96.4 0.07 1.5E-06 54.4 14.1 175 120-304 14-221 (576)
99 PRK06305 DNA polymerase III su 96.4 0.086 1.9E-06 52.1 14.2 38 121-158 16-63 (451)
100 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.025 5.4E-07 50.6 9.5 82 142-224 27-126 (235)
101 PTZ00454 26S protease regulato 96.3 0.089 1.9E-06 51.0 13.6 41 119-159 142-204 (398)
102 PRK14948 DNA polymerase III su 96.3 0.14 3E-06 52.6 15.6 173 121-301 15-219 (620)
103 cd01133 F1-ATPase_beta F1 ATP 96.3 0.024 5.2E-07 51.8 9.0 81 142-224 77-174 (274)
104 PF00004 AAA: ATPase family as 96.3 0.0093 2E-07 47.8 5.8 18 142-159 6-23 (132)
105 PF00308 Bac_DnaA: Bacterial d 96.3 0.015 3.3E-07 51.6 7.6 141 142-301 42-205 (219)
106 CHL00181 cbbX CbbX; Provisiona 96.3 0.073 1.6E-06 49.3 12.3 22 253-274 189-210 (287)
107 PRK11034 clpA ATP-dependent Cl 96.3 0.016 3.5E-07 60.6 8.7 137 122-273 186-362 (758)
108 PF05673 DUF815: Protein of un 96.3 0.056 1.2E-06 48.3 10.8 44 118-161 23-79 (249)
109 PRK08903 DnaA regulatory inact 96.3 0.03 6.6E-07 49.8 9.3 52 252-305 149-200 (227)
110 TIGR02237 recomb_radB DNA repa 96.2 0.032 7E-07 48.9 9.1 78 142-223 20-107 (209)
111 TIGR03346 chaperone_ClpB ATP-d 96.2 0.03 6.6E-07 59.8 10.2 37 122-158 173-218 (852)
112 PRK12727 flagellar biosynthesi 96.1 0.13 2.9E-06 51.2 13.3 78 142-223 358-438 (559)
113 TIGR02881 spore_V_K stage V sp 96.1 0.013 2.8E-07 53.5 6.0 22 253-274 171-192 (261)
114 PRK14088 dnaA chromosomal repl 96.0 0.049 1.1E-06 53.7 10.0 138 142-297 138-298 (440)
115 PRK08116 hypothetical protein; 95.9 0.042 9E-07 50.4 8.7 67 142-223 122-188 (268)
116 KOG0741 AAA+-type ATPase [Post 95.9 0.012 2.6E-07 57.5 5.2 125 142-293 546-704 (744)
117 PHA00729 NTP-binding motif con 95.9 0.049 1.1E-06 48.2 8.4 23 252-274 119-141 (226)
118 TIGR00362 DnaA chromosomal rep 95.8 0.088 1.9E-06 51.3 10.9 139 142-299 144-305 (405)
119 COG1484 DnaC DNA replication p 95.8 0.062 1.3E-06 48.8 9.0 66 142-224 113-178 (254)
120 TIGR02238 recomb_DMC1 meiotic 95.8 0.075 1.6E-06 49.8 9.8 82 142-224 104-202 (313)
121 COG2812 DnaX DNA polymerase II 95.7 0.11 2.3E-06 51.7 11.1 169 121-298 15-214 (515)
122 PLN03187 meiotic recombination 95.7 0.098 2.1E-06 49.6 10.3 82 142-224 134-232 (344)
123 PRK04132 replication factor C 95.7 0.33 7.1E-06 51.4 14.9 142 142-301 574-728 (846)
124 PRK09361 radB DNA repair and r 95.6 0.095 2.1E-06 46.5 9.6 77 142-223 31-117 (225)
125 PRK07399 DNA polymerase III su 95.6 0.41 8.9E-06 44.9 14.1 178 122-305 4-222 (314)
126 cd00983 recA RecA is a bacter 95.6 0.044 9.6E-07 51.4 7.4 76 142-224 63-144 (325)
127 PRK00149 dnaA chromosomal repl 95.5 0.091 2E-06 52.0 10.0 139 142-299 156-317 (450)
128 PRK07952 DNA replication prote 95.5 0.052 1.1E-06 48.9 7.6 68 142-225 107-174 (244)
129 TIGR02012 tigrfam_recA protein 95.5 0.048 1E-06 51.1 7.6 76 142-224 63-144 (321)
130 PRK06526 transposase; Provisio 95.5 0.17 3.8E-06 45.9 11.0 18 142-159 106-123 (254)
131 PRK05707 DNA polymerase III su 95.5 0.34 7.3E-06 45.8 13.3 87 213-305 106-204 (328)
132 PF01695 IstB_IS21: IstB-like 95.5 0.024 5.3E-07 48.5 5.1 65 142-224 55-119 (178)
133 cd01393 recA_like RecA is a b 95.5 0.13 2.8E-06 45.6 10.0 82 142-224 27-125 (226)
134 PRK07261 topology modulation p 95.5 0.052 1.1E-06 46.1 7.0 28 142-169 8-36 (171)
135 PRK09354 recA recombinase A; P 95.5 0.057 1.2E-06 51.1 7.8 76 142-224 68-149 (349)
136 KOG0989 Replication factor C, 95.4 0.079 1.7E-06 48.6 8.2 173 119-306 33-233 (346)
137 TIGR01241 FtsH_fam ATP-depende 95.3 0.059 1.3E-06 54.0 7.8 41 253-296 218-258 (495)
138 KOG0733 Nuclear AAA ATPase (VC 95.3 0.082 1.8E-06 52.8 8.4 83 121-223 189-292 (802)
139 COG3267 ExeA Type II secretory 95.3 1.2 2.5E-05 40.1 14.8 159 142-306 59-247 (269)
140 PLN03186 DNA repair protein RA 95.2 0.15 3.3E-06 48.3 9.8 82 142-224 131-229 (342)
141 PRK12377 putative replication 95.2 0.07 1.5E-06 48.2 7.2 65 142-223 109-173 (248)
142 PRK14086 dnaA chromosomal repl 95.1 0.25 5.4E-06 50.2 11.5 116 142-274 322-460 (617)
143 cd01135 V_A-ATPase_B V/A-type 95.0 0.15 3.2E-06 46.6 8.9 84 142-225 77-178 (276)
144 PRK12422 chromosomal replicati 95.0 0.18 3.9E-06 49.7 10.1 114 142-274 149-285 (445)
145 PRK05642 DNA replication initi 95.0 0.37 8E-06 43.2 11.4 52 248-301 154-205 (234)
146 PRK14722 flhF flagellar biosyn 95.0 1.8 3.9E-05 41.5 16.4 79 142-223 145-225 (374)
147 COG2255 RuvB Holliday junction 94.9 0.025 5.5E-07 51.2 3.6 47 254-304 175-223 (332)
148 TIGR00763 lon ATP-dependent pr 94.9 1.2 2.7E-05 47.2 16.8 37 123-159 321-372 (775)
149 PTZ00361 26 proteosome regulat 94.9 0.043 9.3E-07 53.8 5.4 39 121-159 182-242 (438)
150 cd01394 radB RadB. The archaea 94.9 0.24 5.1E-06 43.7 9.8 34 142-177 27-60 (218)
151 COG1222 RPT1 ATP-dependent 26S 94.9 0.1 2.2E-06 48.9 7.4 87 117-223 146-254 (406)
152 PRK04301 radA DNA repair and r 94.8 0.34 7.3E-06 45.6 11.1 82 142-224 110-209 (317)
153 PRK13531 regulatory ATPase Rav 94.8 0.077 1.7E-06 52.2 6.9 38 122-159 20-64 (498)
154 TIGR02239 recomb_RAD51 DNA rep 94.8 0.24 5.1E-06 46.6 10.0 82 142-224 104-202 (316)
155 KOG0739 AAA+-type ATPase [Post 94.8 2.5 5.4E-05 39.0 15.7 82 122-223 133-235 (439)
156 COG0542 clpA ATP-binding subun 94.8 0.35 7.7E-06 50.3 11.8 106 122-238 491-620 (786)
157 PRK08769 DNA polymerase III su 94.8 1.4 3.1E-05 41.4 15.0 86 213-306 113-210 (319)
158 PF00006 ATP-synt_ab: ATP synt 94.7 0.12 2.6E-06 45.6 7.3 78 142-223 23-115 (215)
159 KOG0731 AAA+-type ATPase conta 94.7 0.4 8.6E-06 49.7 11.9 158 121-300 310-520 (774)
160 COG0468 RecA RecA/RadA recombi 94.6 0.2 4.3E-06 46.0 8.5 81 142-225 68-153 (279)
161 TIGR01243 CDC48 AAA family ATP 94.6 0.39 8.4E-06 50.7 12.0 160 121-305 452-665 (733)
162 PRK06921 hypothetical protein; 94.6 0.14 3.1E-06 46.8 7.7 30 142-172 125-154 (266)
163 TIGR03877 thermo_KaiC_1 KaiC d 94.6 0.3 6.6E-06 43.8 9.7 39 142-184 29-67 (237)
164 PRK08939 primosomal protein Dn 94.6 0.054 1.2E-06 50.6 5.0 65 142-224 164-228 (306)
165 TIGR03305 alt_F1F0_F1_bet alte 94.5 0.18 3.9E-06 49.3 8.6 83 142-225 146-244 (449)
166 PRK06871 DNA polymerase III su 94.5 1.9 4.1E-05 40.6 15.1 86 212-304 106-203 (325)
167 PRK08058 DNA polymerase III su 94.5 1.2 2.5E-05 42.2 13.8 35 124-158 7-52 (329)
168 PRK05703 flhF flagellar biosyn 94.5 0.79 1.7E-05 44.9 13.0 77 142-222 229-308 (424)
169 cd01120 RecA-like_NTPases RecA 94.5 0.33 7.2E-06 40.0 9.2 34 142-177 7-40 (165)
170 TIGR02236 recomb_radA DNA repa 94.5 0.4 8.7E-06 44.9 10.6 82 142-224 103-203 (310)
171 PRK12597 F0F1 ATP synthase sub 94.4 0.18 3.9E-06 49.6 8.4 83 142-225 151-249 (461)
172 COG1373 Predicted ATPase (AAA+ 94.4 0.4 8.7E-06 46.6 10.7 55 213-267 94-161 (398)
173 COG0542 clpA ATP-binding subun 94.3 0.17 3.7E-06 52.6 8.1 90 122-223 170-272 (786)
174 PRK10787 DNA-binding ATP-depen 94.3 2.5 5.4E-05 44.9 16.9 37 122-158 322-373 (784)
175 PRK12726 flagellar biosynthesi 94.3 3.4 7.3E-05 39.8 16.1 78 142-223 214-295 (407)
176 KOG1969 DNA replication checkp 94.2 0.076 1.6E-06 54.1 5.4 65 142-225 334-399 (877)
177 PTZ00035 Rad51 protein; Provis 94.2 0.53 1.1E-05 44.7 10.9 82 142-224 126-224 (337)
178 TIGR01243 CDC48 AAA family ATP 94.2 0.17 3.7E-06 53.3 8.3 38 121-158 177-236 (733)
179 smart00763 AAA_PrkA PrkA AAA d 94.2 0.051 1.1E-06 51.5 3.8 37 123-159 52-103 (361)
180 PRK09280 F0F1 ATP synthase sub 94.1 0.29 6.2E-06 48.1 9.1 83 142-225 152-250 (463)
181 COG0466 Lon ATP-dependent Lon 94.1 0.47 1E-05 48.5 10.5 53 122-179 323-390 (782)
182 CHL00176 ftsH cell division pr 94.0 0.17 3.7E-06 52.1 7.7 41 253-296 346-386 (638)
183 KOG0734 AAA+-type ATPase conta 94.0 0.17 3.8E-06 49.8 7.2 83 122-224 304-407 (752)
184 PF13481 AAA_25: AAA domain; P 94.0 0.33 7.1E-06 41.7 8.5 34 142-175 40-81 (193)
185 PF00154 RecA: recA bacterial 94.0 0.23 4.9E-06 46.5 7.7 77 142-225 61-143 (322)
186 PRK06090 DNA polymerase III su 94.0 2.9 6.3E-05 39.3 15.1 84 213-306 108-203 (319)
187 PTZ00185 ATPase alpha subunit; 93.9 0.4 8.6E-06 47.6 9.4 84 142-225 197-301 (574)
188 KOG0735 AAA+-type ATPase [Post 93.9 0.27 5.8E-06 50.1 8.3 64 142-223 439-504 (952)
189 PRK09183 transposase/IS protei 93.9 3 6.5E-05 37.9 14.8 18 142-159 110-127 (259)
190 KOG0991 Replication factor C, 93.6 0.21 4.5E-06 44.2 6.2 61 121-181 26-95 (333)
191 PRK04328 hypothetical protein; 93.6 0.42 9.1E-06 43.2 8.6 32 142-175 31-62 (249)
192 PRK07993 DNA polymerase III su 93.6 3.7 8E-05 38.9 15.2 87 212-305 107-205 (334)
193 PRK06620 hypothetical protein; 93.5 0.53 1.2E-05 41.5 9.0 48 248-297 135-182 (214)
194 TIGR01039 atpD ATP synthase, F 93.5 0.48 1E-05 46.5 9.3 83 142-225 151-249 (461)
195 TIGR01040 V-ATPase_V1_B V-type 93.5 0.42 9.1E-06 46.8 8.8 84 142-225 149-259 (466)
196 COG1066 Sms Predicted ATP-depe 93.4 0.37 8.1E-06 46.1 8.0 77 142-224 101-179 (456)
197 TIGR01041 ATP_syn_B_arch ATP s 93.4 0.42 9.1E-06 47.1 8.7 84 142-225 149-250 (458)
198 PRK05541 adenylylsulfate kinas 93.4 0.22 4.9E-06 42.3 6.2 27 142-170 15-41 (176)
199 TIGR00959 ffh signal recogniti 93.2 0.74 1.6E-05 45.1 10.1 17 142-158 107-123 (428)
200 PRK08927 fliI flagellum-specif 93.2 0.49 1.1E-05 46.3 8.8 80 142-225 166-260 (442)
201 PRK08972 fliI flagellum-specif 93.2 0.34 7.4E-06 47.2 7.7 80 142-225 170-264 (444)
202 KOG2004 Mitochondrial ATP-depe 93.1 1.5 3.3E-05 45.0 12.1 89 122-224 411-516 (906)
203 cd01121 Sms Sms (bacterial rad 93.0 0.3 6.5E-06 46.9 7.1 78 142-224 90-169 (372)
204 PF13207 AAA_17: AAA domain; P 93.0 0.07 1.5E-06 42.1 2.4 17 142-158 7-23 (121)
205 PRK09519 recA DNA recombinatio 93.0 0.38 8.2E-06 50.4 8.1 75 142-223 68-148 (790)
206 CHL00060 atpB ATP synthase CF1 92.8 0.44 9.5E-06 47.1 8.0 83 142-225 169-274 (494)
207 PRK04196 V-type ATP synthase s 92.8 0.5 1.1E-05 46.7 8.3 83 142-225 151-252 (460)
208 PRK08533 flagellar accessory p 92.8 0.87 1.9E-05 40.7 9.3 44 142-190 32-75 (230)
209 KOG0736 Peroxisome assembly fa 92.7 0.45 9.7E-06 49.0 8.0 88 118-225 668-776 (953)
210 TIGR00602 rad24 checkpoint pro 92.6 0.16 3.5E-06 52.1 4.8 41 118-158 80-134 (637)
211 PRK06851 hypothetical protein; 92.6 1.8 3.8E-05 41.5 11.5 33 142-175 222-254 (367)
212 PRK06936 type III secretion sy 92.5 0.52 1.1E-05 46.1 8.0 80 142-225 170-264 (439)
213 KOG0729 26S proteasome regulat 92.5 0.69 1.5E-05 41.7 8.0 87 117-223 172-280 (435)
214 TIGR02639 ClpA ATP-dependent C 92.5 0.36 7.8E-06 50.9 7.3 93 123-225 455-565 (731)
215 COG2607 Predicted ATPase (AAA+ 92.4 0.44 9.5E-06 42.4 6.6 89 121-235 59-164 (287)
216 PRK06696 uridine kinase; Valid 92.4 0.16 3.4E-06 45.2 3.9 34 126-159 2-47 (223)
217 TIGR03499 FlhF flagellar biosy 92.2 0.6 1.3E-05 43.1 7.7 76 142-222 202-281 (282)
218 PRK08149 ATP synthase SpaL; Va 92.2 0.63 1.4E-05 45.4 8.1 80 142-225 159-253 (428)
219 PRK13765 ATP-dependent proteas 92.2 0.28 6.2E-06 50.4 6.0 72 119-192 28-106 (637)
220 cd03115 SRP The signal recogni 92.2 0.77 1.7E-05 38.8 7.9 18 142-159 8-25 (173)
221 COG1223 Predicted ATPase (AAA+ 92.0 0.55 1.2E-05 42.3 6.8 40 121-160 120-177 (368)
222 PF00448 SRP54: SRP54-type pro 92.0 1.1 2.4E-05 39.0 8.7 79 142-222 9-92 (196)
223 cd00544 CobU Adenosylcobinamid 92.0 0.57 1.2E-05 39.7 6.8 76 142-223 7-83 (169)
224 cd01132 F1_ATPase_alpha F1 ATP 91.9 0.85 1.8E-05 41.7 8.2 80 142-225 77-173 (274)
225 PRK06835 DNA replication prote 91.9 0.62 1.3E-05 44.0 7.5 29 142-172 191-219 (329)
226 PRK15455 PrkA family serine pr 91.9 0.14 3E-06 51.5 3.2 37 122-158 76-127 (644)
227 cd01124 KaiC KaiC is a circadi 91.9 1.1 2.3E-05 38.2 8.5 39 142-184 7-45 (187)
228 PRK06067 flagellar accessory p 91.8 1.3 2.8E-05 39.5 9.3 77 142-223 33-130 (234)
229 PRK10536 hypothetical protein; 91.8 0.39 8.5E-06 43.4 5.8 49 121-169 54-109 (262)
230 PRK10867 signal recognition pa 91.8 1.1 2.5E-05 43.8 9.4 18 142-159 108-125 (433)
231 COG0470 HolB ATPase involved i 91.6 1 2.3E-05 42.0 8.9 36 124-159 3-49 (325)
232 PRK12724 flagellar biosynthesi 91.6 0.71 1.5E-05 44.9 7.6 75 142-221 231-307 (432)
233 TIGR03324 alt_F1F0_F1_al alter 91.6 0.95 2.1E-05 44.9 8.6 80 142-225 170-266 (497)
234 PRK12678 transcription termina 91.5 0.72 1.6E-05 46.5 7.6 83 142-225 424-515 (672)
235 TIGR00764 lon_rel lon-related 91.4 0.49 1.1E-05 48.6 6.7 69 121-191 17-92 (608)
236 TIGR01359 UMP_CMP_kin_fam UMP- 91.3 0.58 1.3E-05 39.8 6.3 17 142-158 7-23 (183)
237 PF13238 AAA_18: AAA domain; P 91.3 0.15 3.2E-06 40.5 2.4 17 142-158 6-22 (129)
238 CHL00195 ycf46 Ycf46; Provisio 91.3 0.95 2.1E-05 45.1 8.5 22 253-274 385-406 (489)
239 COG0714 MoxR-like ATPases [Gen 91.3 0.51 1.1E-05 44.6 6.4 55 124-183 26-87 (329)
240 PRK04296 thymidine kinase; Pro 91.1 0.29 6.3E-06 42.3 4.2 76 142-223 10-88 (190)
241 TIGR03878 thermo_KaiC_2 KaiC d 91.1 1.5 3.1E-05 40.0 8.9 31 142-174 44-74 (259)
242 cd01134 V_A-ATPase_A V/A-type 91.0 1.6 3.4E-05 41.4 9.1 79 142-224 165-265 (369)
243 COG1618 Predicted nucleotide k 91.0 0.28 6.1E-06 40.8 3.6 25 142-167 13-37 (179)
244 TIGR02655 circ_KaiC circadian 91.0 1.6 3.4E-05 43.7 9.8 77 142-223 271-363 (484)
245 PF10923 DUF2791: P-loop Domai 90.9 1.7 3.6E-05 42.3 9.5 69 124-194 27-114 (416)
246 PRK10865 protein disaggregatio 90.9 0.72 1.6E-05 49.4 7.6 37 122-158 568-622 (857)
247 cd01122 GP4d_helicase GP4d_hel 90.8 2 4.3E-05 39.2 9.7 44 142-188 38-81 (271)
248 cd00984 DnaB_C DnaB helicase C 90.8 1.9 4.1E-05 38.5 9.4 43 142-187 21-63 (242)
249 KOG0730 AAA+-type ATPase [Post 90.8 1.4 3E-05 44.7 8.9 41 119-159 431-493 (693)
250 TIGR03496 FliI_clade1 flagella 90.8 0.86 1.9E-05 44.4 7.4 80 142-225 145-239 (411)
251 TIGR03346 chaperone_ClpB ATP-d 90.7 0.74 1.6E-05 49.4 7.6 97 122-225 565-679 (852)
252 TIGR02640 gas_vesic_GvpN gas v 90.6 0.74 1.6E-05 42.0 6.6 48 130-182 10-64 (262)
253 PLN00020 ribulose bisphosphate 90.6 1 2.2E-05 43.0 7.4 18 142-159 156-173 (413)
254 PF02562 PhoH: PhoH-like prote 90.6 0.4 8.7E-06 41.9 4.5 44 127-170 5-55 (205)
255 KOG0733 Nuclear AAA ATPase (VC 90.5 1.3 2.9E-05 44.5 8.4 113 142-274 553-693 (802)
256 CHL00059 atpA ATP synthase CF1 90.5 1.1 2.5E-05 44.2 8.0 80 142-225 149-245 (485)
257 PF06745 KaiC: KaiC; InterPro 90.4 0.73 1.6E-05 40.9 6.2 76 142-222 27-124 (226)
258 PRK05688 fliI flagellum-specif 90.3 1.3 2.7E-05 43.6 8.1 80 142-225 176-270 (451)
259 TIGR00962 atpA proton transloc 90.3 1.2 2.5E-05 44.5 8.0 80 142-225 169-265 (501)
260 PRK14723 flhF flagellar biosyn 90.3 14 0.00031 38.9 16.0 18 142-159 193-210 (767)
261 PRK05922 type III secretion sy 90.3 1.5 3.1E-05 43.0 8.4 80 142-225 165-259 (434)
262 COG1157 FliI Flagellar biosynt 90.2 1.5 3.4E-05 42.1 8.3 78 142-223 171-263 (441)
263 KOG0727 26S proteasome regulat 90.2 2.5 5.4E-05 38.0 9.0 41 119-159 152-214 (408)
264 COG0563 Adk Adenylate kinase a 90.2 0.61 1.3E-05 39.9 5.2 17 142-158 8-24 (178)
265 CHL00095 clpC Clp protease ATP 90.2 0.76 1.6E-05 49.1 7.1 97 122-225 509-623 (821)
266 TIGR03574 selen_PSTK L-seryl-t 90.1 1.2 2.7E-05 40.1 7.5 18 142-159 7-24 (249)
267 PRK06002 fliI flagellum-specif 90.1 1.5 3.3E-05 43.0 8.4 81 142-225 173-266 (450)
268 TIGR00416 sms DNA repair prote 90.0 1.2 2.6E-05 44.1 7.9 78 142-224 102-181 (454)
269 TIGR00390 hslU ATP-dependent p 90.0 0.68 1.5E-05 44.9 5.9 37 123-159 13-72 (441)
270 KOG0743 AAA+-type ATPase [Post 90.0 6.3 0.00014 38.4 12.3 18 142-159 243-260 (457)
271 PRK07594 type III secretion sy 89.9 1.1 2.4E-05 43.8 7.3 80 142-225 163-257 (433)
272 PRK11823 DNA repair protein Ra 89.8 0.87 1.9E-05 45.0 6.7 77 142-223 88-166 (446)
273 TIGR03881 KaiC_arch_4 KaiC dom 89.8 3.6 7.9E-05 36.4 10.2 32 142-175 28-59 (229)
274 cd01136 ATPase_flagellum-secre 89.8 1.8 3.9E-05 40.8 8.4 80 142-225 77-171 (326)
275 PF07728 AAA_5: AAA domain (dy 89.8 0.78 1.7E-05 37.1 5.4 37 142-183 7-43 (139)
276 PRK13849 putative crown gall t 89.8 1.8 3.9E-05 38.7 8.1 38 142-181 10-47 (231)
277 PRK09281 F0F1 ATP synthase sub 89.7 1.5 3.3E-05 43.8 8.2 80 142-225 170-266 (502)
278 PRK06964 DNA polymerase III su 89.5 9.7 0.00021 36.2 13.2 84 213-306 132-227 (342)
279 PF13671 AAA_33: AAA domain; P 89.4 0.27 5.8E-06 39.9 2.4 17 142-158 7-23 (143)
280 PF08433 KTI12: Chromatin asso 89.2 1.4 3E-05 40.4 7.1 19 142-160 9-27 (270)
281 PRK13343 F0F1 ATP synthase sub 89.2 1.5 3.2E-05 43.7 7.7 80 142-225 170-266 (502)
282 PRK09099 type III secretion sy 89.2 1.3 2.9E-05 43.4 7.4 80 142-225 171-265 (441)
283 COG1192 Soj ATPases involved i 89.2 0.51 1.1E-05 42.8 4.3 33 142-175 11-43 (259)
284 cd01125 repA Hexameric Replica 89.2 1.8 3.9E-05 38.7 7.8 18 142-159 9-26 (239)
285 PRK08233 hypothetical protein; 89.2 0.26 5.6E-06 41.9 2.2 17 142-158 11-27 (182)
286 TIGR03345 VI_ClpV1 type VI sec 89.1 0.81 1.7E-05 49.0 6.3 37 122-158 566-620 (852)
287 PRK00771 signal recognition pa 89.0 2 4.3E-05 42.2 8.4 48 142-192 103-152 (437)
288 KOG0738 AAA+-type ATPase [Post 89.0 0.68 1.5E-05 44.1 4.9 18 142-159 253-270 (491)
289 PRK05201 hslU ATP-dependent pr 89.0 0.98 2.1E-05 43.9 6.1 38 122-159 15-75 (443)
290 KOG0744 AAA+-type ATPase [Post 88.9 0.91 2E-05 42.2 5.6 74 142-224 185-261 (423)
291 PRK07667 uridine kinase; Provi 88.8 0.47 1E-05 41.1 3.6 18 142-159 25-42 (193)
292 PRK09270 nucleoside triphospha 88.6 0.44 9.5E-06 42.5 3.4 18 142-159 41-58 (229)
293 cd02027 APSK Adenosine 5'-phos 88.6 2.9 6.2E-05 34.5 8.1 18 142-159 7-24 (149)
294 PTZ00088 adenylate kinase 1; P 88.6 0.49 1.1E-05 42.2 3.6 17 142-158 14-30 (229)
295 PF05659 RPW8: Arabidopsis bro 88.6 7.4 0.00016 32.1 10.3 49 2-52 3-52 (147)
296 PRK02118 V-type ATP synthase s 88.6 2.3 5.1E-05 41.5 8.5 80 142-225 148-243 (436)
297 PF07726 AAA_3: ATPase family 88.5 0.19 4.1E-06 40.3 0.8 23 141-165 6-28 (131)
298 PRK07196 fliI flagellum-specif 88.4 1.7 3.7E-05 42.6 7.4 80 142-225 163-257 (434)
299 PRK06820 type III secretion sy 88.3 2.5 5.5E-05 41.4 8.6 80 142-225 171-265 (440)
300 PRK11034 clpA ATP-dependent Cl 88.3 1.1 2.5E-05 47.1 6.6 93 123-225 459-569 (758)
301 PRK03839 putative kinase; Prov 88.2 0.34 7.3E-06 41.3 2.3 18 142-159 8-25 (180)
302 PRK08472 fliI flagellum-specif 88.1 1.8 3.9E-05 42.4 7.4 77 142-225 165-258 (434)
303 TIGR03497 FliI_clade2 flagella 88.1 2.1 4.5E-05 41.8 7.8 80 142-225 145-239 (413)
304 COG0541 Ffh Signal recognition 88.1 27 0.00059 34.0 17.2 48 142-192 108-157 (451)
305 PF12775 AAA_7: P-loop contain 88.1 0.55 1.2E-05 43.1 3.7 16 142-157 41-56 (272)
306 PF00910 RNA_helicase: RNA hel 87.9 0.39 8.4E-06 37.2 2.3 18 142-159 6-23 (107)
307 PF02374 ArsA_ATPase: Anion-tr 87.8 0.76 1.6E-05 43.0 4.5 18 142-159 9-26 (305)
308 TIGR03498 FliI_clade3 flagella 87.8 1.9 4E-05 42.1 7.3 80 142-225 148-242 (418)
309 PF01656 CbiA: CobQ/CobB/MinD/ 87.7 0.43 9.3E-06 40.9 2.7 36 142-179 7-42 (195)
310 COG4088 Predicted nucleotide k 87.7 0.54 1.2E-05 40.9 3.1 18 142-159 9-26 (261)
311 PF01583 APS_kinase: Adenylyls 87.7 0.48 1E-05 39.5 2.8 27 142-170 10-36 (156)
312 PF00485 PRK: Phosphoribulokin 87.7 0.37 7.9E-06 41.8 2.2 18 142-159 7-24 (194)
313 KOG0735 AAA+-type ATPase [Post 87.6 3.5 7.5E-05 42.5 9.1 83 122-224 667-771 (952)
314 PRK04192 V-type ATP synthase s 87.5 2.7 6E-05 42.5 8.4 80 142-225 235-336 (586)
315 PRK09302 circadian clock prote 87.5 4.1 8.8E-05 41.0 9.9 77 142-223 281-373 (509)
316 cd02025 PanK Pantothenate kina 87.5 3.2 6.9E-05 36.8 8.1 18 142-159 7-24 (220)
317 cd02019 NK Nucleoside/nucleoti 87.4 0.48 1E-05 33.5 2.3 17 142-158 7-23 (69)
318 PRK06762 hypothetical protein; 87.4 0.41 8.9E-06 40.1 2.3 17 142-158 10-26 (166)
319 PRK06793 fliI flagellum-specif 87.3 2.4 5.2E-05 41.5 7.7 80 142-225 164-258 (432)
320 PHA02518 ParA-like protein; Pr 87.3 0.46 1E-05 41.4 2.6 37 142-180 9-45 (211)
321 PF03796 DnaB_C: DnaB-like hel 87.2 5 0.00011 36.3 9.5 45 142-189 27-71 (259)
322 cd02042 ParA ParA and ParB of 87.2 0.41 8.8E-06 36.6 2.0 18 142-159 8-25 (104)
323 KOG3347 Predicted nucleotide k 87.2 0.43 9.3E-06 39.2 2.1 61 142-211 15-75 (176)
324 COG4608 AppF ABC-type oligopep 87.0 2.9 6.4E-05 37.9 7.5 80 142-225 47-139 (268)
325 COG1102 Cmk Cytidylate kinase 87.0 0.76 1.6E-05 38.4 3.5 40 142-194 8-47 (179)
326 COG3640 CooC CO dehydrogenase 86.9 1.1 2.4E-05 39.7 4.7 36 142-178 8-43 (255)
327 COG1158 Rho Transcription term 86.9 5.7 0.00012 37.2 9.4 80 142-222 181-269 (422)
328 TIGR02902 spore_lonB ATP-depen 86.9 0.71 1.5E-05 46.7 4.0 38 121-158 64-110 (531)
329 TIGR02546 III_secr_ATP type II 86.8 3.5 7.6E-05 40.4 8.6 80 142-225 153-247 (422)
330 PRK13407 bchI magnesium chelat 86.7 0.81 1.8E-05 43.3 4.1 38 120-157 6-52 (334)
331 KOG1514 Origin recognition com 86.7 2.9 6.2E-05 42.9 8.0 101 121-223 395-518 (767)
332 COG0464 SpoVK ATPases of the A 86.7 2.4 5.1E-05 42.5 7.6 23 253-275 403-425 (494)
333 cd02040 NifH NifH gene encodes 86.6 1 2.2E-05 41.0 4.6 33 142-176 9-41 (270)
334 TIGR02655 circ_KaiC circadian 86.6 3.1 6.8E-05 41.6 8.4 30 142-173 29-59 (484)
335 PRK11889 flhF flagellar biosyn 86.5 3.6 7.8E-05 39.8 8.2 79 142-223 249-330 (436)
336 PF02367 UPF0079: Uncharacteri 86.4 0.56 1.2E-05 37.4 2.4 19 142-160 23-41 (123)
337 COG0003 ArsA Predicted ATPase 86.2 1.2 2.6E-05 41.9 4.8 39 142-182 10-48 (322)
338 PRK05480 uridine/cytidine kina 86.2 0.51 1.1E-05 41.3 2.3 17 142-158 14-30 (209)
339 PRK06547 hypothetical protein; 86.2 0.91 2E-05 38.6 3.7 17 142-158 23-39 (172)
340 PLN02924 thymidylate kinase 86.1 4.2 9.1E-05 36.0 8.1 78 142-223 24-109 (220)
341 PF03029 ATP_bind_1: Conserved 86.1 0.68 1.5E-05 41.6 3.1 29 142-172 4-32 (238)
342 PF08303 tRNA_lig_kinase: tRNA 86.1 0.47 1E-05 39.7 1.9 39 142-189 7-50 (168)
343 PTZ00301 uridine kinase; Provi 86.1 0.53 1.1E-05 41.4 2.3 17 142-158 11-27 (210)
344 COG0593 DnaA ATPase involved i 86.1 5.6 0.00012 38.6 9.4 27 248-274 232-258 (408)
345 TIGR00235 udk uridine kinase. 86.0 0.5 1.1E-05 41.4 2.2 17 142-158 14-30 (207)
346 COG1428 Deoxynucleoside kinase 86.0 0.51 1.1E-05 41.1 2.1 18 142-159 12-29 (216)
347 PRK08760 replicative DNA helic 85.9 5 0.00011 40.0 9.4 45 142-189 237-281 (476)
348 PRK05748 replicative DNA helic 85.9 38 0.00083 33.5 17.4 46 142-190 211-256 (448)
349 PRK00625 shikimate kinase; Pro 85.9 0.56 1.2E-05 39.9 2.3 18 142-159 8-25 (173)
350 PRK06217 hypothetical protein; 85.9 0.55 1.2E-05 40.2 2.3 18 142-159 9-26 (183)
351 PF01078 Mg_chelatase: Magnesi 85.8 1.2 2.6E-05 38.9 4.3 35 122-156 3-44 (206)
352 PRK07960 fliI flagellum-specif 85.8 1.7 3.6E-05 42.7 5.7 80 142-225 183-277 (455)
353 PRK09302 circadian clock prote 85.8 4.5 9.8E-05 40.7 9.1 33 142-175 39-71 (509)
354 cd01131 PilT Pilus retraction 85.8 0.74 1.6E-05 40.0 3.1 80 142-229 9-90 (198)
355 TIGR01650 PD_CobS cobaltochela 85.8 2.2 4.8E-05 40.1 6.3 36 124-159 47-89 (327)
356 PRK00279 adk adenylate kinase; 85.7 2.6 5.7E-05 37.0 6.7 17 142-158 8-24 (215)
357 PF07015 VirC1: VirC1 protein; 85.7 0.63 1.4E-05 41.3 2.6 32 142-175 10-41 (231)
358 cd02036 MinD Bacterial cell di 85.7 0.63 1.4E-05 39.3 2.6 18 142-159 8-25 (179)
359 PRK10733 hflB ATP-dependent me 85.7 2.4 5.1E-05 44.0 7.2 23 253-275 315-337 (644)
360 PRK14721 flhF flagellar biosyn 85.7 4.1 8.8E-05 39.8 8.4 52 142-193 199-251 (420)
361 PRK07721 fliI flagellum-specif 85.6 3.3 7.2E-05 40.7 7.8 80 142-225 166-260 (438)
362 TIGR01042 V-ATPase_V1_A V-type 85.6 3.9 8.6E-05 41.3 8.3 80 142-225 234-337 (591)
363 TIGR00150 HI0065_YjeE ATPase, 85.5 1.1 2.4E-05 36.2 3.8 19 142-160 30-48 (133)
364 cd02037 MRP-like MRP (Multiple 85.5 0.62 1.4E-05 39.2 2.4 19 142-160 8-26 (169)
365 PF13177 DNA_pol3_delta2: DNA 85.5 9 0.00019 32.0 9.5 33 126-158 1-43 (162)
366 PHA02244 ATPase-like protein 85.3 1.8 3.8E-05 41.4 5.5 36 123-158 97-143 (383)
367 KOG1532 GTPase XAB1, interacts 85.3 0.76 1.7E-05 41.7 2.9 51 142-192 27-86 (366)
368 cd02021 GntK Gluconate kinase 85.2 0.61 1.3E-05 38.3 2.2 16 142-157 7-22 (150)
369 PRK12723 flagellar biosynthesi 85.2 4.3 9.3E-05 39.3 8.2 78 142-223 182-264 (388)
370 CHL00081 chlI Mg-protoporyphyr 85.2 0.97 2.1E-05 43.0 3.8 38 121-158 16-62 (350)
371 PRK13695 putative NTPase; Prov 85.1 1.1 2.4E-05 37.9 3.8 28 142-170 8-35 (174)
372 PF08298 AAA_PrkA: PrkA AAA do 85.1 0.95 2.1E-05 42.7 3.6 67 122-193 61-149 (358)
373 PRK00131 aroK shikimate kinase 85.1 0.63 1.4E-05 39.1 2.3 17 142-158 12-28 (175)
374 COG0194 Gmk Guanylate kinase [ 85.1 0.8 1.7E-05 39.1 2.8 17 142-158 12-28 (191)
375 PRK07773 replicative DNA helic 85.0 39 0.00085 36.6 16.2 43 142-187 225-267 (886)
376 COG4167 SapF ABC-type antimicr 84.9 1.6 3.5E-05 37.3 4.5 15 142-156 47-61 (267)
377 PF13086 AAA_11: AAA domain; P 84.8 2.3 4.9E-05 37.3 5.9 46 142-187 25-75 (236)
378 PRK10037 cell division protein 84.7 0.72 1.6E-05 41.7 2.6 18 142-159 10-27 (250)
379 TIGR01281 DPOR_bchL light-inde 84.4 0.73 1.6E-05 42.0 2.6 18 142-159 8-25 (268)
380 cd00227 CPT Chloramphenicol (C 84.3 0.71 1.5E-05 39.2 2.3 17 142-158 10-26 (175)
381 PRK07165 F0F1 ATP synthase sub 84.3 4.4 9.6E-05 40.4 7.9 80 142-225 151-245 (507)
382 PRK05636 replicative DNA helic 84.3 5 0.00011 40.3 8.5 45 142-189 273-317 (505)
383 KOG2859 DNA repair protein, me 84.3 11 0.00024 33.1 9.4 49 142-190 46-98 (293)
384 PF03266 NTPase_1: NTPase; In 84.2 0.76 1.7E-05 38.9 2.4 18 142-159 7-24 (168)
385 PF03215 Rad17: Rad17 cell cyc 84.2 1.3 2.9E-05 44.5 4.4 45 123-171 20-78 (519)
386 PF13245 AAA_19: Part of AAA d 84.1 2.1 4.6E-05 30.9 4.3 17 142-158 18-35 (76)
387 cd02024 NRK1 Nicotinamide ribo 84.1 0.71 1.5E-05 39.8 2.2 17 142-158 7-23 (187)
388 TIGR02030 BchI-ChlI magnesium 84.0 1.3 2.9E-05 41.9 4.1 36 122-157 4-48 (337)
389 PF00158 Sigma54_activat: Sigm 83.9 1.1 2.3E-05 38.0 3.1 34 124-157 1-45 (168)
390 KOG2228 Origin recognition com 83.9 3.5 7.5E-05 38.7 6.6 150 121-273 23-219 (408)
391 TIGR03880 KaiC_arch_3 KaiC dom 83.9 5.2 0.00011 35.3 7.8 32 142-175 24-55 (224)
392 TIGR03600 phage_DnaB phage rep 83.9 8.3 0.00018 37.7 9.8 45 142-189 202-246 (421)
393 COG0465 HflB ATP-dependent Zn 83.9 1.6 3.6E-05 44.2 4.9 42 120-161 148-210 (596)
394 COG0125 Tmk Thymidylate kinase 83.7 2.4 5.3E-05 37.2 5.4 43 142-186 11-53 (208)
395 cd02023 UMPK Uridine monophosp 83.7 0.74 1.6E-05 39.9 2.2 17 142-158 7-23 (198)
396 KOG0726 26S proteasome regulat 83.7 1.2 2.6E-05 40.8 3.5 40 120-159 183-244 (440)
397 TIGR00665 DnaB replicative DNA 83.7 46 0.001 32.6 17.6 45 142-189 203-247 (434)
398 COG1419 FlhF Flagellar GTP-bin 83.7 5.7 0.00012 38.3 8.2 76 142-222 211-290 (407)
399 TIGR01313 therm_gnt_kin carboh 83.7 0.8 1.7E-05 38.2 2.3 17 142-158 6-22 (163)
400 TIGR01026 fliI_yscN ATPase Fli 83.6 4.7 0.0001 39.7 7.8 80 142-225 171-265 (440)
401 PRK14529 adenylate kinase; Pro 83.6 4.1 8.9E-05 36.2 6.9 77 142-223 8-86 (223)
402 PRK14531 adenylate kinase; Pro 83.6 3.3 7.1E-05 35.4 6.1 17 142-158 10-26 (183)
403 COG0305 DnaB Replicative DNA h 83.5 6.1 0.00013 38.7 8.4 78 142-225 204-289 (435)
404 COG0467 RAD55 RecA-superfamily 83.5 1.3 2.8E-05 40.3 3.7 32 142-175 31-62 (260)
405 cd01983 Fer4_NifH The Fer4_Nif 83.4 1 2.2E-05 33.2 2.6 18 142-159 7-24 (99)
406 COG3598 RepA RecA-family ATPas 83.2 5.3 0.00012 37.3 7.4 62 131-192 79-156 (402)
407 TIGR02322 phosphon_PhnN phosph 83.2 0.81 1.8E-05 38.8 2.2 17 142-158 9-25 (179)
408 PRK13947 shikimate kinase; Pro 83.2 0.86 1.9E-05 38.3 2.3 18 142-159 9-26 (171)
409 PRK10646 ADP-binding protein; 83.1 0.77 1.7E-05 38.1 1.9 20 142-161 36-55 (153)
410 PRK13231 nitrogenase reductase 83.0 1.3 2.8E-05 40.3 3.6 29 142-173 10-38 (264)
411 KOG0728 26S proteasome regulat 83.0 2.2 4.8E-05 38.2 4.8 45 124-175 149-215 (404)
412 PRK11545 gntK gluconate kinase 83.0 0.9 2E-05 38.2 2.3 17 142-158 3-19 (163)
413 PRK13185 chlL protochlorophyll 83.0 0.94 2E-05 41.4 2.6 18 142-159 10-27 (270)
414 PRK13230 nitrogenase reductase 82.9 0.93 2E-05 41.7 2.6 18 142-159 9-26 (279)
415 TIGR01969 minD_arch cell divis 82.9 0.94 2E-05 40.6 2.6 18 142-159 9-26 (251)
416 PF06309 Torsin: Torsin; Inte 82.9 12 0.00026 29.9 8.5 37 122-158 25-77 (127)
417 PRK06321 replicative DNA helic 82.6 7.9 0.00017 38.5 9.1 44 142-188 234-277 (472)
418 TIGR01351 adk adenylate kinase 82.6 4.5 9.8E-05 35.4 6.7 17 142-158 7-23 (210)
419 PRK14974 cell division protein 82.6 7.3 0.00016 36.9 8.5 78 142-223 148-232 (336)
420 TIGR00064 ftsY signal recognit 82.5 11 0.00023 34.6 9.4 78 142-223 80-164 (272)
421 PF05970 PIF1: PIF1-like helic 82.5 2.6 5.6E-05 40.4 5.6 19 142-160 30-48 (364)
422 PF02223 Thymidylate_kin: Thym 82.4 2.1 4.5E-05 36.6 4.5 43 142-187 4-47 (186)
423 TIGR01287 nifH nitrogenase iro 82.4 1 2.2E-05 41.3 2.6 20 142-161 8-27 (275)
424 TIGR01360 aden_kin_iso1 adenyl 82.3 0.97 2.1E-05 38.5 2.3 17 142-158 11-27 (188)
425 PF03193 DUF258: Protein of un 82.3 1.3 2.9E-05 37.1 3.0 30 129-158 24-59 (161)
426 COG0529 CysC Adenylylsulfate k 82.2 1.2 2.6E-05 37.8 2.7 19 142-160 31-49 (197)
427 PRK13233 nifH nitrogenase redu 82.0 0.84 1.8E-05 41.8 1.9 18 142-159 10-27 (275)
428 PF08477 Miro: Miro-like prote 82.0 0.99 2.2E-05 35.1 2.1 18 142-159 7-24 (119)
429 cd02032 Bchl_like This family 81.8 1.1 2.4E-05 40.8 2.6 18 142-159 8-25 (267)
430 PRK05595 replicative DNA helic 81.8 57 0.0012 32.2 17.4 45 142-189 209-253 (444)
431 cd00464 SK Shikimate kinase (S 81.7 1.1 2.4E-05 36.8 2.4 17 142-158 7-23 (154)
432 PF03205 MobB: Molybdopterin g 81.6 2.2 4.8E-05 34.8 4.1 32 142-174 8-39 (140)
433 TIGR01425 SRP54_euk signal rec 81.6 7.2 0.00016 38.2 8.2 18 142-159 108-125 (429)
434 PRK13235 nifH nitrogenase redu 81.5 1.1 2.5E-05 41.0 2.6 18 142-159 9-26 (274)
435 PRK13975 thymidylate kinase; P 81.4 1.1 2.3E-05 38.7 2.3 18 142-159 10-27 (196)
436 PRK13232 nifH nitrogenase redu 81.4 1.1 2.4E-05 41.0 2.5 18 142-159 9-26 (273)
437 PRK04040 adenylate kinase; Pro 81.3 1.1 2.4E-05 38.7 2.3 17 142-158 10-26 (188)
438 COG0572 Udk Uridine kinase [Nu 81.3 1 2.2E-05 39.7 2.0 18 142-159 16-33 (218)
439 cd02028 UMPK_like Uridine mono 81.2 1.1 2.3E-05 38.4 2.2 18 142-159 7-24 (179)
440 cd03110 Fer4_NifH_child This p 81.1 0.97 2.1E-05 38.4 1.9 17 142-158 8-24 (179)
441 PRK00889 adenylylsulfate kinas 81.1 1.1 2.4E-05 38.0 2.2 18 142-159 12-29 (175)
442 PF12780 AAA_8: P-loop contain 81.0 5 0.00011 36.7 6.6 15 142-156 39-53 (268)
443 TIGR03371 cellulose_yhjQ cellu 80.8 1.3 2.7E-05 39.7 2.6 30 142-173 10-39 (246)
444 TIGR02688 conserved hypothetic 80.8 6.8 0.00015 38.2 7.6 16 142-157 217-232 (449)
445 PRK13949 shikimate kinase; Pro 80.8 1.2 2.6E-05 37.7 2.3 18 142-159 9-26 (169)
446 PRK06995 flhF flagellar biosyn 80.7 6.5 0.00014 39.1 7.7 50 142-192 264-315 (484)
447 COG1149 MinD superfamily P-loo 80.4 1.7 3.8E-05 39.3 3.2 28 142-171 10-37 (284)
448 PF06068 TIP49: TIP49 C-termin 80.3 2.5 5.5E-05 40.2 4.4 41 121-161 23-77 (398)
449 COG4778 PhnL ABC-type phosphon 80.1 1.7 3.8E-05 36.7 2.9 27 142-171 45-71 (235)
450 cd02020 CMPK Cytidine monophos 80.1 1.3 2.9E-05 35.8 2.4 17 142-158 7-23 (147)
451 TIGR01043 ATP_syn_A_arch ATP s 80.1 4.9 0.00011 40.7 6.6 80 142-225 230-331 (578)
452 KOG1547 Septin CDC10 and relat 80.0 3.5 7.5E-05 36.8 4.9 38 122-159 24-71 (336)
453 cd02034 CooC The accessory pro 80.0 1.6 3.5E-05 34.4 2.6 18 142-159 7-24 (116)
454 PF00406 ADK: Adenylate kinase 79.9 1.4 3.1E-05 36.2 2.4 17 142-158 4-20 (151)
455 PRK13886 conjugal transfer pro 79.8 4.1 8.9E-05 36.6 5.5 18 142-159 11-28 (241)
456 KOG1051 Chaperone HSP104 and r 79.8 6.9 0.00015 41.7 7.8 93 123-225 563-672 (898)
457 PRK14532 adenylate kinase; Pro 79.8 1.3 2.8E-05 38.0 2.2 17 142-158 8-24 (188)
458 PRK13976 thymidylate kinase; P 79.7 3.9 8.4E-05 35.9 5.2 19 142-160 8-26 (209)
459 PF10662 PduV-EutP: Ethanolami 79.6 1.2 2.6E-05 36.5 1.8 17 142-158 9-25 (143)
460 PF06564 YhjQ: YhjQ protein; 79.6 1.5 3.2E-05 39.4 2.6 18 142-159 10-27 (243)
461 cd03223 ABCD_peroxisomal_ALDP 79.5 7.5 0.00016 32.5 6.8 17 142-158 35-51 (166)
462 COG1224 TIP49 DNA helicase TIP 79.5 3.1 6.8E-05 39.3 4.7 44 121-164 38-95 (450)
463 cd02117 NifH_like This family 79.5 1.5 3.2E-05 38.5 2.6 18 142-159 8-25 (212)
464 PRK10078 ribose 1,5-bisphospho 79.5 1.2 2.6E-05 38.2 1.9 16 142-157 10-25 (186)
465 COG0802 Predicted ATPase or ki 79.4 1.2 2.7E-05 36.6 1.8 20 142-161 33-52 (149)
466 PF13521 AAA_28: AAA domain; P 79.4 1.3 2.8E-05 37.0 2.0 16 142-157 7-22 (163)
467 PRK06761 hypothetical protein; 79.3 1.9 4.2E-05 39.7 3.3 18 142-159 11-28 (282)
468 PRK14530 adenylate kinase; Pro 79.1 1.4 3.1E-05 38.7 2.4 17 142-158 11-27 (215)
469 PRK13768 GTPase; Provisional 79.1 1.6 3.4E-05 39.6 2.7 18 142-159 10-27 (253)
470 PRK08840 replicative DNA helic 79.1 4.5 9.8E-05 40.2 6.0 46 142-190 225-270 (464)
471 cd03111 CpaE_like This protein 79.0 1.3 2.9E-05 34.2 1.9 18 142-159 8-25 (106)
472 CHL00072 chlL photochlorophyll 79.0 1.5 3.3E-05 40.6 2.6 18 142-159 8-25 (290)
473 PRK07004 replicative DNA helic 79.0 11 0.00023 37.5 8.7 45 142-189 221-265 (460)
474 TIGR01968 minD_bact septum sit 79.0 1.5 3.3E-05 39.5 2.6 18 142-159 10-27 (261)
475 PRK13946 shikimate kinase; Pro 79.0 1.5 3.2E-05 37.6 2.3 17 142-158 18-34 (184)
476 cd01672 TMPK Thymidine monopho 78.9 4.4 9.4E-05 34.6 5.3 18 142-159 8-25 (200)
477 KOG2170 ATPase of the AAA+ sup 78.9 10 0.00022 35.1 7.6 88 124-225 84-190 (344)
478 PRK05973 replicative DNA helic 78.9 5.3 0.00011 35.8 5.9 39 142-184 72-110 (237)
479 PRK08006 replicative DNA helic 78.8 13 0.00028 37.0 9.2 45 142-189 232-276 (471)
480 cd00880 Era_like Era (E. coli 78.6 1.2 2.7E-05 35.8 1.7 16 142-157 4-19 (163)
481 TIGR00750 lao LAO/AO transport 78.6 8.9 0.00019 35.7 7.6 19 142-160 42-60 (300)
482 TIGR03263 guanyl_kin guanylate 78.5 1.3 2.8E-05 37.5 1.8 16 142-157 9-24 (180)
483 PRK06904 replicative DNA helic 78.4 6.1 0.00013 39.4 6.7 46 142-190 229-274 (472)
484 COG1100 GTPase SAR1 and relate 78.3 1.2 2.6E-05 39.0 1.6 18 142-159 13-30 (219)
485 PRK13705 plasmid-partitioning 78.3 2.8 6E-05 40.6 4.2 18 142-159 115-132 (388)
486 PRK03846 adenylylsulfate kinas 78.2 1.5 3.3E-05 38.0 2.2 17 142-158 32-48 (198)
487 TIGR00041 DTMP_kinase thymidyl 78.1 5.1 0.00011 34.4 5.5 19 142-160 11-29 (195)
488 TIGR03453 partition_RepA plasm 78.1 3.2 6.9E-05 40.2 4.6 34 142-177 113-146 (387)
489 PRK05057 aroK shikimate kinase 78.1 1.6 3.5E-05 37.0 2.3 17 142-158 12-28 (172)
490 cd01878 HflX HflX subfamily. 77.9 2.9 6.4E-05 36.1 4.0 17 142-158 49-65 (204)
491 PF14532 Sigma54_activ_2: Sigm 77.8 1.3 2.7E-05 36.0 1.5 35 125-159 1-46 (138)
492 cd01428 ADK Adenylate kinase ( 77.8 1.6 3.6E-05 37.3 2.3 16 142-157 7-22 (194)
493 PHA02519 plasmid partition pro 77.6 3.2 6.9E-05 40.2 4.4 28 142-171 115-142 (387)
494 PHA02530 pseT polynucleotide k 77.5 1.6 3.5E-05 40.4 2.3 17 142-158 10-26 (300)
495 PRK05800 cobU adenosylcobinami 77.4 4.5 9.7E-05 34.2 4.8 74 142-223 9-86 (170)
496 COG1855 ATPase (PilT family) [ 77.3 2.7 5.9E-05 40.9 3.7 28 132-159 253-288 (604)
497 PRK03731 aroL shikimate kinase 77.1 1.9 4E-05 36.3 2.4 17 142-158 10-26 (171)
498 PRK14527 adenylate kinase; Pro 77.0 1.8 3.9E-05 37.2 2.3 18 142-159 14-31 (191)
499 PF09848 DUF2075: Uncharacteri 76.8 8.8 0.00019 36.6 7.2 35 142-176 9-43 (352)
500 PRK05342 clpX ATP-dependent pr 76.8 2.6 5.6E-05 41.1 3.6 36 123-158 72-132 (412)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-51 Score=419.91 Aligned_cols=347 Identities=23% Similarity=0.298 Sum_probs=261.2
Q ss_pred HhhhhHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhchhhHHHHHHHH---------
Q 045120 15 WLAPPTERQLVYLRKRNYNANLENLKAELEKLKVERTSIQ----------LRVSEAKEKGEEIEEKVEKWL--------- 75 (374)
Q Consensus 15 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~v~----------~~i~~a~~~~~~~~~~v~~wl--------- 75 (374)
++.+.+.+....+ .+....+..+++++..|+..+.++. .|.++.++.+++.++.+..+.
T Consensus 11 ~~~~~l~~~~~~~--~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 11 KLDQLLNRESECL--DGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred hHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555556 6666666777777777777666533 356666666665555544333
Q ss_pred -----------------Hhhhh-------HHHHHHHHHHHHHHHHhccCCccccccC-CCcccccccccccccccccHHH
Q 045120 76 -----------------TRYQL-------SKKAKTEVKALIELGEEVKKFDIVSHCT-IPEEIWLKSNKVYEAFESRVSN 130 (374)
Q Consensus 76 -----------------~r~~~-------~~~i~~~~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vGr~~~ 130 (374)
++++. ++++-++.+.++.+ .....|....... +.......|...... ||.+..
T Consensus 89 ~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~ 166 (889)
T KOG4658|consen 89 DLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESL-GSKGVFEVVGESLDPREKVETRPIQSESD-VGLETM 166 (889)
T ss_pred HHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHh-ccccceecccccccchhhcccCCCCcccc-ccHHHH
Confidence 12222 33333333333433 2233344433321 112223333333334 999999
Q ss_pred HHHHHHHhhcC---------CCCccHHHHHHHHHHHhh-hcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch---hh
Q 045120 131 LKSTQNALTNA---------NGGIGKTTLAKEFAKQAR-EDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE---EA 197 (374)
Q Consensus 131 ~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~ 197 (374)
++++++.|.++ |||+||||||++++|+.. +.++||.++||+||+.++...++++|++.++..... .+
T Consensus 167 ~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~ 246 (889)
T KOG4658|consen 167 LEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKE 246 (889)
T ss_pred HHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhh
Confidence 99999999876 999999999999999988 999999999999999999999999999999874333 33
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccccccccCcCCCC---------CcchhHhhhhcCCCCceecCCCCHHHHHHH
Q 045120 198 EYRRASRLYERLKNENKILVILANIWKLLDLETVKIPFRND---------SRDNNVVLLSMGSKDNFLIANITEEEAWRL 268 (374)
Q Consensus 198 ~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~---------TR~~~va~~~~~~~~~~~l~~L~~~~s~~L 268 (374)
..+.+..|.+.|.+ |||||||||||+..+|+.++.|+|.. ||+..|+...|+....+++++|+.+|||+|
T Consensus 247 ~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~L 325 (889)
T KOG4658|consen 247 EDELASKLLNLLEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDL 325 (889)
T ss_pred HHHHHHHHHHHhcc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHH
Confidence 46788999999998 99999999999999999999999876 999999765588888999999999999999
Q ss_pred HHHhcCCC--CCCcchHHHHHHHHHHccCCchHHHHHHhc--CCC-cccccccccc----------cCCC-Ccccchhh-
Q 045120 269 FKIMNGDD--VENCKFKSTAINVAKACGAGLFCTLTTNAS--KSS-SIYSHVSNDY----------QSIY-KPKPYLAV- 331 (374)
Q Consensus 269 f~~~a~~~--~~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~~~-~~~~W~~~~~----------~~~~-~~~~~~~l- 331 (374)
|++.+|.. ...+.++.+|++|+++| +|+|||++++|+ +.| +.++|++... +++. .+.+.+.+
T Consensus 326 F~~~v~~~~~~~~~~i~~lak~v~~kC-~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklS 404 (889)
T KOG4658|consen 326 FQKKVGPNTLGSHPDIEELAKEVAEKC-GGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLS 404 (889)
T ss_pred HHHhhccccccccccHHHHHHHHHHHh-CChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhcc
Confidence 99999844 33456899999999999 999999999999 555 8889944322 1222 33356666
Q ss_pred cccCCchhhhhhhc----CchhhhhcHHHHHHHHHhCCcce
Q 045120 332 FQDLEPTIVKTAFV----DPKWYLALKEEFEALQRNQTWSL 368 (374)
Q Consensus 332 y~~Lp~~~lk~cfL----fp~~~~i~~~~Li~~W~~~~~~~ 368 (374)
|++||+ ++|+||| ||+||.|++++||..|+|+||.-
T Consensus 405 yd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~ 444 (889)
T KOG4658|consen 405 YDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFID 444 (889)
T ss_pred HhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcC
Confidence 999995 5999996 99999999999999999999753
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-38 Score=294.45 Aligned_cols=239 Identities=24% Similarity=0.342 Sum_probs=183.2
Q ss_pred cHHHHHHHHHHhhc--C---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc-
Q 045120 127 RVSNLKSTQNALTN--A---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS- 194 (374)
Q Consensus 127 r~~~~~~i~~~L~~--~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 194 (374)
||.++++|.+.|.. + |||+||||||..++++..++++|+.++|+++++..+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 3 99999999999999987788999999999999999999999999999987732
Q ss_pred ---hhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccccccccCcCCCC---------CcchhHhhhhcCCCCceecCCCCH
Q 045120 195 ---EEAEYRRASRLYERLKNENKILVILANIWKLLDLETVKIPFRND---------SRDNNVVLLSMGSKDNFLIANITE 262 (374)
Q Consensus 195 ---~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~---------TR~~~va~~~~~~~~~~~l~~L~~ 262 (374)
..+.......+.+.|.+ +++||||||||+...|+.+...++.. ||+..++....+....|+|++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34666788999999998 79999999999999998876655432 999888743333367899999999
Q ss_pred HHHHHHHHHhcCCCC--CCcchHHHHHHHHHHccCCchHHHHHHhc--CCC-ccccccccccc------CC----CCccc
Q 045120 263 EEAWRLFKIMNGDDV--ENCKFKSTAINVAKACGAGLFCTLTTNAS--KSS-SIYSHVSNDYQ------SI----YKPKP 327 (374)
Q Consensus 263 ~~s~~Lf~~~a~~~~--~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~~~-~~~~W~~~~~~------~~----~~~~~ 327 (374)
++|++||++.++... .++.+.+++++|+++| +|+||||+++|+ +.+ +..+|...... +. ....+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c-~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKC-GGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHT-TT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998443 4566678899999999 999999999999 333 78889443211 11 11112
Q ss_pred chhh-cccCCchhhhhhhc----CchhhhhcHHHHHHHHHhCCcce
Q 045120 328 YLAV-FQDLEPTIVKTAFV----DPKWYLALKEEFEALQRNQTWSL 368 (374)
Q Consensus 328 ~~~l-y~~Lp~~~lk~cfL----fp~~~~i~~~~Li~~W~~~~~~~ 368 (374)
.+.+ |+.||++ +|+||+ ||.++.|+++.||++|+++||.-
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 3334 9999885 999994 99999999999999999999963
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=6.9e-28 Score=260.52 Aligned_cols=237 Identities=17% Similarity=0.129 Sum_probs=172.4
Q ss_pred ccccccccHHHHHHHHHHhhcC-----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe---CCC----------
Q 045120 120 VYEAFESRVSNLKSTQNALTNA-----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV---SQT---------- 175 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~-----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~---------- 175 (374)
....+|||+..++++..+|.-+ |||+||||||+++|+.. ..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l--~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL--SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH--hhcCCeEEEeeccccccchhhccccccc
Confidence 3567999999999999988633 99999999999999954 477999888742 111
Q ss_pred -CC-HHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccccccccCcC---CCC------CcchhH
Q 045120 176 -SD-IKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLDLETVKIPF---RND------SRDNNV 244 (374)
Q Consensus 176 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~---~~~------TR~~~v 244 (374)
++ ...++..++..+....... . .....+++.|.+ ||+||||||||+..+|+.+.... ..+ ||+..+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~-~-~~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIK-I-YHLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcc-c-CCHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 01 1234445555442221110 0 012456777888 99999999999998888875432 233 999999
Q ss_pred hhhhcCCCCceecCCCCHHHHHHHHHHhcCCCC-CCcchHHHHHHHHHHccCCchHHHHHHhc--CCCccccccccccc-
Q 045120 245 VLLSMGSKDNFLIANITEEEAWRLFKIMNGDDV-ENCKFKSTAINVAKACGAGLFCTLTTNAS--KSSSIYSHVSNDYQ- 320 (374)
Q Consensus 245 a~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~-~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~~~~~~~W~~~~~~- 320 (374)
+. .++..++|+++.|++++||+||+++||... .++++.+++++|+++| +|+||||+++|+ ++++.++|......
T Consensus 337 l~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c-~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 337 LR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRA-GNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh-CCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 74 566678999999999999999999999544 3457889999999999 999999999999 78889999554321
Q ss_pred --CCC-Ccccchhh-cccCCchhhhhhhc----CchhhhhcHHHHHHHHHhCCc
Q 045120 321 --SIY-KPKPYLAV-FQDLEPTIVKTAFV----DPKWYLALKEEFEALQRNQTW 366 (374)
Q Consensus 321 --~~~-~~~~~~~l-y~~Lp~~~lk~cfL----fp~~~~i~~~~Li~~W~~~~~ 366 (374)
... ++...+.+ |+.|+++..|.||+ ||.++.++ .|..|++.+.
T Consensus 415 ~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~ 465 (1153)
T PLN03210 415 RNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSD 465 (1153)
T ss_pred HhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcC
Confidence 111 22235566 99998755999997 67666443 4777887654
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.93 E-value=3.6e-08 Score=95.71 Aligned_cols=183 Identities=18% Similarity=0.129 Sum_probs=116.3
Q ss_pred cccccccHHHHHHHHHHhhcC-------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA-------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~-------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
+..++||++++++|...|... ++|+|||++++.++++.......-..++++.....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 456999999999998887321 8899999999999997654332234577777777788899999999
Q ss_pred HhCcC-C--chhhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc------ccccccCc---CCC-C------CcchhHh--
Q 045120 188 KLGLE-L--SEEAEYRRASRLYERLKN-ENKILVILANIWKLL------DLETVKIP---FRN-D------SRDNNVV-- 245 (374)
Q Consensus 188 ~l~~~-~--~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~------~~~~l~~~---~~~-~------TR~~~va-- 245 (374)
++... . ...+..+....+.+.+.. ++..+||||+++... .+..+... .+. . +....+.
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhh
Confidence 98652 2 122445666777777764 356899999998532 22232211 111 1 2211111
Q ss_pred -----hhhcCCCCceecCCCCHHHHHHHHHHhcCC---C--CCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 246 -----LLSMGSKDNFLIANITEEEAWRLFKIMNGD---D--VENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 246 -----~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~---~--~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
.... ....+.+++++.++..+++...+.. . ..+..+..+++...... |..+.|+.++-
T Consensus 189 l~~~~~s~~-~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~-Gd~r~a~~ll~ 256 (394)
T PRK00411 189 LDPRVKSVF-RPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH-GDARVAIDLLR 256 (394)
T ss_pred cCHHHHhcC-CcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 1111 1246789999999999999987631 1 12223333443333335 77888887764
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.90 E-value=8e-08 Score=88.16 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=98.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHH----HHhcCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYE----RLKNENKILV 217 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~----~L~~~kr~Ll 217 (374)
+.|+|||||++.+++..... .+ ..+|+ +....+..+++..|+..++.+....+.......+.. .+..+++.+|
T Consensus 51 ~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vl 127 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALL 127 (269)
T ss_pred CCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 88999999999999875422 11 12233 333457788999999999876544333333334433 3334478999
Q ss_pred EEeCCCCcc--ccccccC--cCC--CC-------CcchhHh---------hhhcCCCCceecCCCCHHHHHHHHHHhcCC
Q 045120 218 ILANIWKLL--DLETVKI--PFR--ND-------SRDNNVV---------LLSMGSKDNFLIANITEEEAWRLFKIMNGD 275 (374)
Q Consensus 218 VlDdv~~~~--~~~~l~~--~~~--~~-------TR~~~va---------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~ 275 (374)
|+||++... .++.+.. .+. +. +-..... .........+.+++|+.++..+++...+..
T Consensus 128 iiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~ 207 (269)
T TIGR03015 128 VVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLER 207 (269)
T ss_pred EEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHH
Confidence 999998753 2333211 000 00 1111110 000111346789999999999998877641
Q ss_pred C---CCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 276 D---VENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 276 ~---~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
. ....--.+..+.|++.| +|.|..|..++.
T Consensus 208 ~g~~~~~~~~~~~~~~i~~~s-~G~p~~i~~l~~ 240 (269)
T TIGR03015 208 AGNRDAPVFSEGAFDAIHRFS-RGIPRLINILCD 240 (269)
T ss_pred cCCCCCCCcCHHHHHHHHHHc-CCcccHHHHHHH
Confidence 1 11122347788999999 999999999886
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.85 E-value=1.1e-08 Score=91.33 Aligned_cols=175 Identities=21% Similarity=0.295 Sum_probs=90.0
Q ss_pred ccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH---------
Q 045120 124 FESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDI--------- 185 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--------- 185 (374)
|+||+.++++|.+++..+ +.|+|||+|++.+.+..... .+ .++|+......+... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESS-LRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHH-HHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhH-HHHHHHHHHHHHH
Confidence 789999999999999864 88999999999999865321 11 344554444432222 2222
Q ss_pred -HHHhCcCC-----------chhhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc-ccc-------cc---cCcCCCC---
Q 045120 186 -AEKLGLEL-----------SEEAEYRRASRLYERLKN-ENKILVILANIWKLL-DLE-------TV---KIPFRND--- 238 (374)
Q Consensus 186 -~~~l~~~~-----------~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~-~~~-------~l---~~~~~~~--- 238 (374)
...+.... ...........+.+.+.. +++.+||+||+.... ... .+ .......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 12221111 011223344555555553 356999999987554 111 11 1111111
Q ss_pred ------CcchhHhhh-------hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHH
Q 045120 239 ------SRDNNVVLL-------SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTT 303 (374)
Q Consensus 239 ------TR~~~va~~-------~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ 303 (374)
|. ..+... ..+....+.|++|+.+++++++...+.....-+.-....++|...+ ||.|..|.-
T Consensus 158 ~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLT-GGNPRYLQE 233 (234)
T ss_dssp EEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHH-TT-HHHHHH
T ss_pred eEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHh-CCCHHHHhc
Confidence 22 212111 1233345999999999999999987643211011234457999999 999998864
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=4.3e-07 Score=97.47 Aligned_cols=178 Identities=13% Similarity=0.126 Sum_probs=109.4
Q ss_pred ccccccccccHHHHHHHHHHhhcC------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhC
Q 045120 118 NKVYEAFESRVSNLKSTQNALTNA------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-TSDIKKIQGDIAEKLG 190 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~~~------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~ 190 (374)
|.....++-|..-.+.+-+..... ++|.|||||+.+.... ++.++|+++.. ..++..+...++..++
T Consensus 10 p~~~~~~~~R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred CCCccccCcchHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 333455777776666554332222 9999999999998752 33689999964 4577777788877774
Q ss_pred cCCch--------------hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc------ccccccCcCCCC------Ccchh
Q 045120 191 LELSE--------------EAEYRRASRLYERLKN-ENKILVILANIWKLL------DLETVKIPFRND------SRDNN 243 (374)
Q Consensus 191 ~~~~~--------------~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~------TR~~~ 243 (374)
..... .+.......+...|.. +.+++|||||+.... .+..+....|.+ ||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 21111 1112233444444443 478999999997542 233333334444 66531
Q ss_pred Hhh-hhc-CCCCceecC----CCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 244 VVL-LSM-GSKDNFLIA----NITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 244 va~-~~~-~~~~~~~l~----~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
-.. ... -......+. +|+.+|+.+||....+..-. .....+|.+.| +|.|+++..++.
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t-~Gwp~~l~l~~~ 227 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDV-EGWATALQLIAL 227 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHh-CChHHHHHHHHH
Confidence 110 000 012244555 99999999999887664322 24456899999 999999998886
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.63 E-value=1.5e-06 Score=83.40 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=111.7
Q ss_pred cccccccHHHHHHHHHHhhc----C---------CCCccHHHHHHHHHHHhhhc-CCC---CeEEEEEeCCCCCHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTN----A---------NGGIGKTTLAKEFAKQARED-KLF---DRVVFSEVSQTSDIKKIQG 183 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~----~---------~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~ 183 (374)
+..++||+.++++|...|.. . ++|+|||++++.++++.... ... -..+|++.....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 34699999999999999863 1 88999999999999865321 111 1356777777777888999
Q ss_pred HHHHHhC---cCCch--hhHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-----ccccccCc-----CCCC-------Cc
Q 045120 184 DIAEKLG---LELSE--EAEYRRASRLYERLK-NENKILVILANIWKLL-----DLETVKIP-----FRND-------SR 240 (374)
Q Consensus 184 ~i~~~l~---~~~~~--~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~-----~~~~l~~~-----~~~~-------TR 240 (374)
.|+.++. ...+. .+..+....+.+.+. .+++++||||+++... .+..+... .+.. +.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999983 32221 234455566667665 2368899999998651 12222111 1111 22
Q ss_pred chhHh-------hhhcCCCCceecCCCCHHHHHHHHHHhcC---C-CCCCcchHHHHHHHHHHccCCchHHH
Q 045120 241 DNNVV-------LLSMGSKDNFLIANITEEEAWRLFKIMNG---D-DVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 241 ~~~va-------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~---~-~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
..... ..... ...+.+++++.++..+++...+. . ....++..+....++..+ +|-|-.+
T Consensus 174 ~~~~~~~l~~~~~s~~~-~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~-~Gd~R~a 243 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLC-EEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE-HGDARKA 243 (365)
T ss_pred CcchHhhcCHHHhccCC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh-cCCHHHH
Confidence 11110 01111 24688999999999999998763 1 112233334445677777 7887443
No 9
>PF05729 NACHT: NACHT domain
Probab=98.49 E-value=1.3e-06 Score=73.57 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=75.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKL----FDRVVFSEVSQTSDIK---KIQGDIAEKLGLELSEEAEYRRASRLYERLKNENK 214 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr 214 (374)
.+|+||||+++.++.+...... +...+|.+.+...... .+...|..+......... ..+...+...++
T Consensus 8 ~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~ 82 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIE-----ELLQELLEKNKR 82 (166)
T ss_pred CCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhH-----HHHHHHHHcCCc
Confidence 7899999999999987665543 3456677766554332 344444444432211111 133344444589
Q ss_pred EEEEEeCCCCccc-------------cccccCc-CCCC------CcchhH--hhhhcCCCCceecCCCCHHHHHHHHHHh
Q 045120 215 ILVILANIWKLLD-------------LETVKIP-FRND------SRDNNV--VLLSMGSKDNFLIANITEEEAWRLFKIM 272 (374)
Q Consensus 215 ~LlVlDdv~~~~~-------------~~~l~~~-~~~~------TR~~~v--a~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 272 (374)
++||||++.+... +..+... .+.+ +|.... ..........+.|++|++++..+++.++
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 9999999975432 2222222 2222 555444 2223344468999999999999999876
Q ss_pred c
Q 045120 273 N 273 (374)
Q Consensus 273 a 273 (374)
.
T Consensus 163 f 163 (166)
T PF05729_consen 163 F 163 (166)
T ss_pred h
Confidence 5
No 10
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=4.3e-07 Score=81.92 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHH-----HHHhCcCCchh--hHHHHHHHHHHHHhcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT--SDIKKIQGDI-----AEKLGLELSEE--AEYRRASRLYERLKNE 212 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i-----~~~l~~~~~~~--~~~~~~~~l~~~L~~~ 212 (374)
++|+|||||++.+|++.... +|+.++|+.++.+ .++.++++.+ +..++.+.... -..........+...+
T Consensus 24 ~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G 102 (249)
T cd01128 24 PPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHG 102 (249)
T ss_pred CCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 88999999999999987654 8999999998877 7999999999 44444321110 1112223333333345
Q ss_pred CeEEEEEeCCCCc
Q 045120 213 NKILVILANIWKL 225 (374)
Q Consensus 213 kr~LlVlDdv~~~ 225 (374)
++.+|++|++...
T Consensus 103 ~~vll~iDei~r~ 115 (249)
T cd01128 103 KDVVILLDSITRL 115 (249)
T ss_pred CCEEEEEECHHHh
Confidence 8999999999743
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.40 E-value=5.1e-06 Score=77.75 Aligned_cols=173 Identities=14% Similarity=0.025 Sum_probs=102.3
Q ss_pred ccccccHHHHHHHHHHhhc-----C---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTN-----A---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~-----~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
..|+|++..+++|..++.. . +.|+|||+||+.+.+.... .| ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchh-HHHHHH
Confidence 4699999999999888862 1 8999999999999986542 12 1222211112222 223333
Q ss_pred HhCcCC-------chhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccccccccCcCCCC---CcchhHhh---hhcCCCCc
Q 045120 188 KLGLEL-------SEEAEYRRASRLYERLKNENKILVILANIWKLLDLETVKIPFRND---SRDNNVVL---LSMGSKDN 254 (374)
Q Consensus 188 ~l~~~~-------~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~---TR~~~va~---~~~~~~~~ 254 (374)
.++... ...+ ....+.+...+.+ .+..+|+++..+...+.....++.-. |+...+.. ..+ ...
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~--~~~ 153 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMED-FRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRF--GII 153 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhh-hheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhc--ceE
Confidence 333221 1011 1233456667776 67788888877665554332221100 33322211 112 246
Q ss_pred eecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 255 FLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 255 ~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
+.+++++.++..+++.+.+..... .--.+....|++.| +|.|-.+.-++.
T Consensus 154 ~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~-~G~pR~~~~ll~ 203 (305)
T TIGR00635 154 LRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRS-RGTPRIANRLLR 203 (305)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHh-CCCcchHHHHHH
Confidence 899999999999999988863221 11235667899999 999976655553
No 12
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.39 E-value=9.1e-07 Score=83.61 Aligned_cols=82 Identities=11% Similarity=0.162 Sum_probs=56.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCcCCchhhHH-------HHHHHHHHHHhcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS--DIKKIQGDIAEKLGLELSEEAEY-------RRASRLYERLKNE 212 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~l~~~L~~~ 212 (374)
++|+||||||+.||++.... +|+.++||.+++.. ++.++++.|...+-....+.+.. .....-......+
T Consensus 177 ppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G 255 (416)
T PRK09376 177 PPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHG 255 (416)
T ss_pred CCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999988765 89999999999987 78888888863222122121111 1122222222345
Q ss_pred CeEEEEEeCCCC
Q 045120 213 NKILVILANIWK 224 (374)
Q Consensus 213 kr~LlVlDdv~~ 224 (374)
++.+|++|++..
T Consensus 256 ~dVlL~iDsItR 267 (416)
T PRK09376 256 KDVVILLDSITR 267 (416)
T ss_pred CCEEEEEEChHH
Confidence 899999999863
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.33 E-value=1.3e-05 Score=75.87 Aligned_cols=176 Identities=14% Similarity=0.038 Sum_probs=101.5
Q ss_pred ccccccccHHHHHHHHHHhhc----C----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 045120 120 VYEAFESRVSNLKSTQNALTN----A----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDI 185 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~----~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 185 (374)
....|+|++..++.+...+.. + +.|+||||||+.+.+..... + .++..+ .......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecc-cccChHHHHHH
Confidence 456799999999998777752 1 89999999999999965421 1 122221 11222233444
Q ss_pred HHHhCcCC----ch-hh-HHHHHHHHHHHHhcCCeEEEEEeCCCCccccccccCcC---CCCCcchhHhh---hhcCCCC
Q 045120 186 AEKLGLEL----SE-EA-EYRRASRLYERLKNENKILVILANIWKLLDLETVKIPF---RNDSRDNNVVL---LSMGSKD 253 (374)
Q Consensus 186 ~~~l~~~~----~~-~~-~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~---~~~TR~~~va~---~~~~~~~ 253 (374)
+..+.... ++ .. .....+.+...+.. .+..+|+|+..+...+.....++ ...|+...+.. ..+ ..
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf--~~ 173 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRF--GI 173 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhc--Ce
Confidence 44443221 00 00 01123345556665 67778888866554433211111 00133222211 112 24
Q ss_pred ceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 254 NFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 254 ~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
.+.+++++.++..+++.+.+...... --.+....|++.| +|.|-.+..+..
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~-~G~pR~a~~~l~ 224 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRS-RGTPRIANRLLR 224 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHc-CCCchHHHHHHH
Confidence 68999999999999999888632211 1235678999999 999976655553
No 14
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.28 E-value=6.3e-06 Score=80.44 Aligned_cols=160 Identities=14% Similarity=0.126 Sum_probs=90.7
Q ss_pred cccccccHHHHHH---HHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 121 YEAFESRVSNLKS---TQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 121 ~~~~vGr~~~~~~---i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
...++|.+..+.. +.+++... ++|+||||||+.+++... .. |+.++....-..-.+.++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~-----~~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--AP-----FEALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----EEEEecccccHHHHHHHH--
Confidence 4568888877655 66666554 889999999999998543 22 232222211111111111
Q ss_pred hCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ccccccCcCCCC--------Ccchh--HhhhhcCCCCcee
Q 045120 189 LGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVKIPFRND--------SRDNN--VVLLSMGSKDNFL 256 (374)
Q Consensus 189 l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~--------TR~~~--va~~~~~~~~~~~ 256 (374)
+........+++.+|+||+++... ..+.|...+..+ |.+.. +..........+.
T Consensus 82 --------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~ 147 (413)
T PRK13342 82 --------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFE 147 (413)
T ss_pred --------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeE
Confidence 222222222378899999998542 333333333222 22221 1011112225789
Q ss_pred cCCCCHHHHHHHHHHhcCCCC-CC-cchHHHHHHHHHHccCCchHHHHHH
Q 045120 257 IANITEEEAWRLFKIMNGDDV-EN-CKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 257 l~~L~~~~s~~Lf~~~a~~~~-~~-~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
+.+|+.++..+++.+.+.... .. .--.+....|++.| +|-|..+.-+
T Consensus 148 ~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s-~Gd~R~aln~ 196 (413)
T PRK13342 148 LKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLA-NGDARRALNL 196 (413)
T ss_pred eCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999998764211 01 12245667899999 9988766443
No 15
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.26 E-value=3.3e-06 Score=68.36 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=64.7
Q ss_pred CCCccHHHHHHHHHHHhhhc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch-hhHHHHHHHHHHHHhcCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQARED---KLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE-EAEYRRASRLYERLKNENKILV 217 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~~~kr~Ll 217 (374)
..|+|||++++.+.++.... ..-..++|+.++...+...+...|+..++..... .+..++.+.+.+.+...+..+|
T Consensus 12 ~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~l 91 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLL 91 (131)
T ss_dssp -TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEE
T ss_pred CCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEE
Confidence 78999999999998865321 1124567999988889999999999999987666 5667777889999987556799
Q ss_pred EEeCCCCc
Q 045120 218 ILANIWKL 225 (374)
Q Consensus 218 VlDdv~~~ 225 (374)
|+|++...
T Consensus 92 viDe~~~l 99 (131)
T PF13401_consen 92 VIDEADHL 99 (131)
T ss_dssp EEETTHHH
T ss_pred EEeChHhc
Confidence 99998653
No 16
>PTZ00202 tuzin; Provisional
Probab=98.10 E-value=0.00049 Score=66.08 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=65.5
Q ss_pred cccccccccccHHHHHHHHHHhhcC------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 117 SNKVYEAFESRVSNLKSTQNALTNA------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 117 ~~~~~~~~vGr~~~~~~i~~~L~~~------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
.|.....|+||+.++..+...|.+. ++|+|||||++.+..... + ..++++.. +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 3455668999999999999988642 889999999999986432 2 23444333 67999999
Q ss_pred HHHHhCcCCchhhHHHHHHHHHHHHh----c-CCeEEEEEe
Q 045120 185 IAEKLGLELSEEAEYRRASRLYERLK----N-ENKILVILA 220 (374)
Q Consensus 185 i~~~l~~~~~~~~~~~~~~~l~~~L~----~-~kr~LlVlD 220 (374)
|+..||.+.. ....++...|.+.|. . +++-+||+-
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999997432 223444455555443 2 466666664
No 17
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.06 E-value=0.00053 Score=70.13 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=103.6
Q ss_pred ccccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCC---eEEEEEeCCC---CCHHHHHHH
Q 045120 120 VYEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFD---RVVFSEVSQT---SDIKKIQGD 184 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~~~~~ 184 (374)
....++|++..+..+.+.+... +.|+||||||+.+++.......++ ..-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 3456899999999988877543 889999999999998765433332 2345544321 122222111
Q ss_pred H---------------HHHhCcCC----------------ch--hhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cccc
Q 045120 185 I---------------AEKLGLEL----------------SE--EAEYRRASRLYERLKNENKILVILANIWKL--LDLE 229 (374)
Q Consensus 185 i---------------~~~l~~~~----------------~~--~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~ 229 (374)
+ +...+... ++ .=+......|.+.|.+ ++++++.|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccch
Confidence 1 11111100 00 0112356788888888 7899997777654 2355
Q ss_pred cccCcCCCC-----------CcchhH-hhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCc
Q 045120 230 TVKIPFRND-----------SRDNNV-VLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGL 297 (374)
Q Consensus 230 ~l~~~~~~~-----------TR~~~v-a~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~Gl 297 (374)
.+...+..+ |++... ..........+.+.+++.++.+.++.+.+......- -.++...|...+ ..-
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s~eal~~L~~ys-~~g 388 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-AAGVEELIARYT-IEG 388 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHCC-CcH
Confidence 554333322 332221 110011123678899999999999999875321111 134455566666 555
Q ss_pred hHHHHHHhc
Q 045120 298 FCTLTTNAS 306 (374)
Q Consensus 298 PLai~~ig~ 306 (374)
+-|+..++.
T Consensus 389 Rraln~L~~ 397 (615)
T TIGR02903 389 RKAVNILAD 397 (615)
T ss_pred HHHHHHHHH
Confidence 777776654
No 18
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.00 E-value=8.8e-05 Score=69.73 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
++|+||||||+.+..... ..| ..+|-..+-.+-++.++ +.-++.+..+++.+|.+|.
T Consensus 56 PPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~i~----------------e~a~~~~~~gr~tiLflDE 112 (436)
T COG2256 56 PPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLREII----------------EEARKNRLLGRRTILFLDE 112 (436)
T ss_pred CCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHHHH----------------HHHHHHHhcCCceEEEEeh
Confidence 999999999999998443 333 33343332222222222 2222222224899999999
Q ss_pred CCC--ccccccccCcCCCC--------CcchhHh--hhhcCCCCceecCCCCHHHHHHHHHHhc
Q 045120 222 IWK--LLDLETVKIPFRND--------SRDNNVV--LLSMGSKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 222 v~~--~~~~~~l~~~~~~~--------TR~~~va--~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
|.. ..+-+.|.+..-++ |-+..-. .....-..++.+++|+.++-.+++.+.+
T Consensus 113 IHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 113 IHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 974 34555566655555 3333211 0012334589999999999999999844
No 19
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=2.4e-05 Score=74.45 Aligned_cols=83 Identities=12% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCcCCchhhH-------HHHHHHHHHHHhcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT--SDIKKIQGDIAEKLGLELSEEAE-------YRRASRLYERLKNE 212 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~-------~~~~~~l~~~L~~~ 212 (374)
.+|+|||||++.+++..... +|+..+||.+.+. .++.++++.|...+-....+.+. ....+........+
T Consensus 176 ~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~G 254 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 254 (415)
T ss_pred CCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcC
Confidence 77999999999999987644 7999999999977 78999999985433222111111 11222333333346
Q ss_pred CeEEEEEeCCCCc
Q 045120 213 NKILVILANIWKL 225 (374)
Q Consensus 213 kr~LlVlDdv~~~ 225 (374)
++.+|++|.+...
T Consensus 255 kdVVLlIDEitR~ 267 (415)
T TIGR00767 255 KDVVILLDSITRL 267 (415)
T ss_pred CCeEEEEEChhHH
Confidence 8999999998643
No 20
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=9.8e-05 Score=70.49 Aligned_cols=182 Identities=22% Similarity=0.269 Sum_probs=116.3
Q ss_pred ccccccHHHHHHHHHHhhcC-------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA-------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~-------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
..+.+||.+++++...|..- ..|+|||+.++.|....+....=..+++|+.-...+..+++..|+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 34889999999999887643 78999999999999976533211127899999999999999999999
Q ss_pred hCc-CCchhhHHHHHHHHHHHHhc-CCeEEEEEeCCCCccc-----cccccCcCCC-C--------Ccch--------hH
Q 045120 189 LGL-ELSEEAEYRRASRLYERLKN-ENKILVILANIWKLLD-----LETVKIPFRN-D--------SRDN--------NV 244 (374)
Q Consensus 189 l~~-~~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~-----~~~l~~~~~~-~--------TR~~--------~v 244 (374)
++. +....+..+....+.+.+.. ++.+++|||++..... +-.|...... . +-+. .|
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv 176 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRV 176 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhh
Confidence 962 22334556667777777764 5799999999975321 2222111111 1 1111 11
Q ss_pred hhhhcCCCCceecCCCCHHHHHHHHHHhcC---C-CC-CCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 245 VLLSMGSKDNFLIANITEEEAWRLFKIMNG---D-DV-ENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 245 a~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~---~-~~-~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
....+.. .+..+|-+.++-.+++...+. . .. .+.-++-++...+... |-.=.||.++-.
T Consensus 177 -~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~-GDAR~aidilr~ 240 (366)
T COG1474 177 -KSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAES-GDARKAIDILRR 240 (366)
T ss_pred -hhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcC-ccHHHHHHHHHH
Confidence 1123333 377888899999999888774 2 22 2333334444444444 555666665554
No 21
>PRK06893 DNA replication initiation factor; Validated
Probab=97.92 E-value=7.9e-05 Score=66.70 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
+.|+|||+|++.+++..... ...+.|+++.... ... ..+.+.+. +.-+|||||
T Consensus 47 ~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~--~~dlLilDD 99 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE--QQDLVCLDD 99 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc--cCCEEEEeC
Confidence 88999999999999975433 3355677653110 000 01122222 245899999
Q ss_pred CCCc---ccccc-ccC---cC-CCC------C----------cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCC
Q 045120 222 IWKL---LDLET-VKI---PF-RND------S----------RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDV 277 (374)
Q Consensus 222 v~~~---~~~~~-l~~---~~-~~~------T----------R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~ 277 (374)
++.. ..|+. +.. .. ..+ | ....+. ..+.....++++++++++.++++++.+....
T Consensus 100 i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~-sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 100 LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLA-SRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHH-HHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 9853 22321 100 00 000 1 123443 2445556899999999999999999886332
Q ss_pred CCcchHHHHHHHHHHccCCchHHH
Q 045120 278 ENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 278 ~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
..- -.++..-|++.+ +|-.-++
T Consensus 179 l~l-~~~v~~~L~~~~-~~d~r~l 200 (229)
T PRK06893 179 IEL-SDEVANFLLKRL-DRDMHTL 200 (229)
T ss_pred CCC-CHHHHHHHHHhc-cCCHHHH
Confidence 111 135667888888 6554443
No 22
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.91 E-value=4.3e-05 Score=65.57 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=30.1
Q ss_pred cccccHHHHHHHHHHhh--cC----------CCCccHHHHHHHHHHHhhhc
Q 045120 123 AFESRVSNLKSTQNALT--NA----------NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~--~~----------~gGiGKTtLA~~v~~~~~~~ 161 (374)
.|+||+++++++.+.|. .. .+|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999993 11 88999999999999877655
No 23
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00029 Score=70.99 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=92.7
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
...++||-+..++.|.+++..+ ..|+||||+|+.+.+..-..+. +..--+ .+..+........|...-
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEIDAGR 91 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHHcCC
Confidence 3567999999999999998876 7899999999999875432110 000000 000111111111111100
Q ss_pred CcC-----C-chhhHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--ccccccCcC----CCC------CcchhHhhh
Q 045120 190 GLE-----L-SEEAEYRRASRLYERL----KNENKILVILANIWKLL--DLETVKIPF----RND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~-----~-~~~~~~~~~~~l~~~L----~~~kr~LlVlDdv~~~~--~~~~l~~~~----~~~------TR~~~va~~ 247 (374)
... . .....++.. .+.+.+ ..++.-++|||++.... ..+.|...+ +.. |....+...
T Consensus 92 hpDviEIdAas~~gVDdIR-eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 92 FVDYIEMDAASNRGVDEMA-QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCcceEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 000 0 001112111 122221 12356799999998542 233332222 222 333333321
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTT 303 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ 303 (374)
...-...+.+..++.++..+.+.+.+....... -.+..+.|++.+ +|.|.....
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A-~Gs~RdALs 224 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAA-QGSMRDALS 224 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHHHH
Confidence 122224789999999999998887764221111 134456889999 888864433
No 24
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00037 Score=69.23 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=91.5
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCCCHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDR-VVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
...++|-+..+..|.+.+..+ +.|+||||+|+.+++..-....+.. ..+ ..+........|....
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~----~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI----KTCEQCTNCISFNNHN 95 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc----CCCCCChHHHHHhcCC
Confidence 456889999999988877665 8899999999999885432211100 000 0001111111111110
Q ss_pred CcC------CchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cccccccC----cCCCC------CcchhHhhh
Q 045120 190 GLE------LSEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVKI----PFRND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~------~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~----~~~~~------TR~~~va~~ 247 (374)
... ......++... +.+... .+++-++|+|+++.. ..++.|.. +-+.. |+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~-iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRR-IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHH-HHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 000 00011111111 111111 126778999999854 23444332 22221 444444322
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
.......+++.+++.++....+.+.+......-+ .+....|++.+ +|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s-~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKS-EGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHc-CCCHHHH
Confidence 2222347899999999999999988753221111 34556788999 8876433
No 25
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.83 E-value=9.3e-05 Score=71.62 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=67.7
Q ss_pred ccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc
Q 045120 122 EAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS 194 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 194 (374)
..+++.+..++.+...|... ++|+|||++|+.+++.......|+.+.||.+++..+..++...+.-. +....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy~ 253 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGFR 253 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCeE
Confidence 45778899999999998765 99999999999999877655678889999999998877765432110 00000
Q ss_pred hhhHHHHHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045120 195 EEAEYRRASRLYERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 195 ~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~ 225 (374)
....-..+.+...-.. +++++||+|++...
T Consensus 254 -~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 254 -RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred -ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0001111222222221 36899999999744
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00049 Score=70.42 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=91.9
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
...+++|.+..++.|.+++..+ ..|+||||+|+.+.+.......++ +..+........|...-
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 3567999999999999998875 779999999998887543221111 01112122222221110
Q ss_pred CcC-----C-chhhHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--ccccccCcC---CCC-------CcchhHhhh
Q 045120 190 GLE-----L-SEEAEYRRASRLYERL----KNENKILVILANIWKLL--DLETVKIPF---RND-------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~-----~-~~~~~~~~~~~l~~~L----~~~kr~LlVlDdv~~~~--~~~~l~~~~---~~~-------TR~~~va~~ 247 (374)
... . .....++.. .+.+.+ ..++.-++|||++.... .++.|...+ +.. |....+...
T Consensus 87 h~DviEIDAas~rgVDdIR-eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMA-ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CceEEEecccccccHHHHH-HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 000 0 000111111 111211 12245588899998553 233332221 222 222233211
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCch-HHHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLF-CTLTT 303 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlP-Lai~~ 303 (374)
...-...++++.|+.++..+.+.+........ --.+..+.|++.| +|.. -|+..
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A-~GsmRdALsL 220 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAA-QGSMRDALSL 220 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHHHHH
Confidence 11222479999999999999998877532211 1235566889999 6644 56555
No 27
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00056 Score=65.63 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=88.8
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|-+..++.+.+.+..+ +.|+||||+|+.+.+.......+. +..+........+.....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 456899999999999888765 889999999999988543211110 000111111111111100
Q ss_pred cCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccccCcC---CCC-------CcchhHhhhh
Q 045120 191 LEL------SEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETVKIPF---RND-------SRDNNVVLLS 248 (374)
Q Consensus 191 ~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~---~~~-------TR~~~va~~~ 248 (374)
... .....+ ....+.+.+. .+++-++|+|++.... .++.+...+ |.. |....+....
T Consensus 88 ~d~~~~~~~~~~~v~-~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVE-EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHH-HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000 000111 1122222221 1245689999987543 233322211 111 2222232111
Q ss_pred cCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 249 MGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 249 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
.+....+++.+++.++..+.+...+...... --.+....|+..+ +|.|-.+
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s-~G~~R~a 217 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHA-HGSMRDA 217 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHH
Confidence 2223479999999999998888766422111 1134566889999 9988643
No 28
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00039 Score=68.67 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=91.7
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCC-------------------CCeEEEE
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKL-------------------FDRVVFS 170 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 170 (374)
....++|.+.....|.+.+..+ +.|+||||+|+.+.+....... +...+.+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 3456899988888888877655 8899999999999875432110 0011222
Q ss_pred EeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cccccccCcC---CCC---
Q 045120 171 EVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVKIPF---RND--- 238 (374)
Q Consensus 171 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~---~~~--- 238 (374)
+.+...+...+ ..+.+... .+++-++|+|++... ...+.|...+ +..
T Consensus 92 ~aa~~~gid~i---------------------R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 92 DAASNRGIDEI---------------------RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred eCcccCCHHHH---------------------HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22211111111 12222221 125678999998643 2222222221 111
Q ss_pred ----CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 239 ----SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 239 ----TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
|....+..........+.+.+++.++....+.+.+...... --.+....|++.++|+++.++..+-.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 22223322122223478999999999988888877422111 11345667888885777888877765
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.76 E-value=0.00038 Score=71.18 Aligned_cols=239 Identities=14% Similarity=0.113 Sum_probs=134.7
Q ss_pred cccccccHHHHHHHHHHhhcC------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcCC
Q 045120 121 YEAFESRVSNLKSTQNALTNA------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLEL 193 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~ 193 (374)
+.+.+-|..-.+.+-+..... ++|.|||||+-+...... .=..+.|.++... .++..+.+.++..++.-.
T Consensus 18 ~~~~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~al~~~~ 94 (894)
T COG2909 18 PDNYVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAALQQAT 94 (894)
T ss_pred cccccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHHHHHhC
Confidence 445666654444443322211 999999999999876221 2346899998765 678999999998887332
Q ss_pred chh--------------hHHHHHHHHHHHHhc-CCeEEEEEeCCC---Cc---cccccccCcCCCC------CcchhHhh
Q 045120 194 SEE--------------AEYRRASRLYERLKN-ENKILVILANIW---KL---LDLETVKIPFRND------SRDNNVVL 246 (374)
Q Consensus 194 ~~~--------------~~~~~~~~l~~~L~~-~kr~LlVlDdv~---~~---~~~~~l~~~~~~~------TR~~~va~ 246 (374)
+.. +.....+.+...|.. .++.++||||-- +. .-++-+....|++ ||+..-.
T Consensus 95 p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l- 173 (894)
T COG2909 95 PTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQL- 173 (894)
T ss_pred ccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCC-
Confidence 221 223344455555543 368999999964 22 1245555666766 6655321
Q ss_pred hhcCC----CCceecC----CCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc--C-CCcccccc
Q 045120 247 LSMGS----KDNFLIA----NITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS--K-SSSIYSHV 315 (374)
Q Consensus 247 ~~~~~----~~~~~l~----~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~-~~~~~~W~ 315 (374)
..+. ....+++ .|+.+|+-++|....+..-+ ..-.+.+.+.. +|-+-|+..++= + +.+.+.--
T Consensus 174 -~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~t-eGW~~al~L~aLa~~~~~~~~q~~ 247 (894)
T COG2909 174 -GLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRT-EGWAAALQLIALALRNNTSAEQSL 247 (894)
T ss_pred -cccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhc-ccHHHHHHHHHHHccCCCcHHHHh
Confidence 1111 1122332 37899999999877643222 23345788888 999999887775 4 22322221
Q ss_pred cccccCCCCccc-chhh--cccCCchhhhhhhc-------Cchhh-----hh-cHHHHHHHHHhCCcceecC
Q 045120 316 SNDYQSIYKPKP-YLAV--FQDLEPTIVKTAFV-------DPKWY-----LA-LKEEFEALQRNQTWSLVHT 371 (374)
Q Consensus 316 ~~~~~~~~~~~~-~~~l--y~~Lp~~~lk~cfL-------fp~~~-----~i-~~~~Li~~W~~~~~~~~~~ 371 (374)
.. .++....+. ++.= ++.||++ +|..++ |...- .+ +-..++..=.+.|+.+++-
T Consensus 248 ~~-LsG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~L 317 (894)
T COG2909 248 RG-LSGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRL 317 (894)
T ss_pred hh-ccchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeee
Confidence 11 112112110 1111 8999986 888774 22111 11 2334455556666666553
No 30
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00068 Score=63.69 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=92.3
Q ss_pred ccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhh----hcCCCCeEEEEE-eCCCCCHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAR----EDKLFDRVVFSE-VSQTSDIKKIQGDIA 186 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~----~~~~F~~~~wv~-vs~~~~~~~~~~~i~ 186 (374)
..++|-+..++.+.+++..+ +.|+||||+|+.++...- ...|+|...|.. -+......++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 45789888899999998765 789999999999988532 235667766654 2333344342 2333
Q ss_pred HHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC--CccccccccCcC---CCC------Ccchh-HhhhhcCCCCc
Q 045120 187 EKLGLELSEEAEYRRASRLYERLKNENKILVILANIW--KLLDLETVKIPF---RND------SRDNN-VVLLSMGSKDN 254 (374)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~--~~~~~~~l~~~~---~~~------TR~~~-va~~~~~~~~~ 254 (374)
+.+.... ..+ ++-++|+|++. +...++.+...+ |.+ |.+.+ +..........
T Consensus 83 ~~~~~~p---------------~~~-~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------YEG-DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------ccC-CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3332110 012 44555666554 333333332222 222 33222 21111122247
Q ss_pred eecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 255 FLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 255 ~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
+++.+++.++....+.+..... + ...+..++..| +|.|..+....
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~--~---~~~~~~l~~~~-~g~~~~a~~~~ 191 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYNDI--K---EEEKKSAIAFS-DGIPGKVEKFI 191 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcCC--C---HHHHHHHHHHc-CCCHHHHHHHh
Confidence 8999999999988776654211 1 23356788999 99997665444
No 31
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.73 E-value=0.00041 Score=71.72 Aligned_cols=183 Identities=16% Similarity=0.136 Sum_probs=110.1
Q ss_pred cccccccHHHHHHHHHHhhcC--------------CCCccHHHHHHHHHHHhhh---cCCCC--eEEEEEeCCCCCHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA--------------NGGIGKTTLAKEFAKQARE---DKLFD--RVVFSEVSQTSDIKKI 181 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~--------------~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~ 181 (374)
+..+.|||.++++|...|... +.|+|||+.++.|.+.... +...+ .+++|+...-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 456889999999998887542 7899999999999876432 12222 2567776666788899
Q ss_pred HHHHHHHhCcCCchh--hHHHHHHHHHHHHhc--CCeEEEEEeCCCCcc-----ccccccC-cC-CCC-------Ccc--
Q 045120 182 QGDIAEKLGLELSEE--AEYRRASRLYERLKN--ENKILVILANIWKLL-----DLETVKI-PF-RND-------SRD-- 241 (374)
Q Consensus 182 ~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~~--~kr~LlVlDdv~~~~-----~~~~l~~-~~-~~~-------TR~-- 241 (374)
+..|..++....+.. +..+....+...+.. ....+||||++.... .+-.|.. +. ... +..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999999985443321 233455666666532 134699999997432 1221111 11 111 111
Q ss_pred ------hhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCC---CCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 242 ------NNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDD---VENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 242 ------~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~---~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
..+ ...++ ...+..+|++.++-.+++...+... ..+..+.-+|..++..- |-.=.||.++-.
T Consensus 914 LperLdPRL-RSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S-GDARKALDILRr 984 (1164)
T PTZ00112 914 LPERLIPRC-RSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS-GDIRKALQICRK 984 (1164)
T ss_pred cchhhhhhh-hhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-CHHHHHHHHHHH
Confidence 111 11222 2246679999999999999987632 12333444444444444 666677766654
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.72 E-value=0.00012 Score=64.13 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=78.2
Q ss_pred cccccccccHHHHHHHHHHhh---c--C---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 119 KVYEAFESRVSNLKSTQNALT---N--A---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~---~--~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
....+|+|-+.-++++.-++. . + ++|+||||||..+.+..... |. +.+.+.-....+ +..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~d-l~~ 94 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGD-LAA 94 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHH-HHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHH-HHH
Confidence 445679999988877644432 1 1 99999999999999966532 31 222211111111 122
Q ss_pred HHHHhCcCC----chh--hHHHHHHHHHHHHhcCCeEEEEEeCCCCccccccccCcCCCC------CcchhHhhhhcCCC
Q 045120 185 IAEKLGLEL----SEE--AEYRRASRLYERLKNENKILVILANIWKLLDLETVKIPFRND------SRDNNVVLLSMGSK 252 (374)
Q Consensus 185 i~~~l~~~~----~~~--~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~------TR~~~va~~~~~~~ 252 (374)
++..+.... ++- =.....+.|.-.+.+ .+.-||+.-=-+.. .+...+|.- ||...+.. ..-.-
T Consensus 95 il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd-~~idiiiG~g~~ar---~~~~~l~~FTligATTr~g~ls~-pLrdR 169 (233)
T PF05496_consen 95 ILTNLKEGDILFIDEIHRLNKAQQEILLPAMED-GKIDIIIGKGPNAR---SIRINLPPFTLIGATTRAGLLSS-PLRDR 169 (233)
T ss_dssp HHHT--TT-EEEECTCCC--HHHHHHHHHHHHC-SEEEEEBSSSSS-B---EEEEE----EEEEEESSGCCTSH-CCCTT
T ss_pred HHHhcCCCcEEEEechhhccHHHHHHHHHHhcc-CeEEEEeccccccc---eeeccCCCceEeeeeccccccch-hHHhh
Confidence 233332110 000 011122333333333 23323333211110 011111111 66655431 11111
Q ss_pred --CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHH
Q 045120 253 --DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLT 302 (374)
Q Consensus 253 --~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~ 302 (374)
-..+++..+.+|-.++..+.+..-... --.+.+.+|++.| .|-|--+.
T Consensus 170 Fgi~~~l~~Y~~~el~~Iv~r~a~~l~i~-i~~~~~~~Ia~rs-rGtPRiAn 219 (233)
T PF05496_consen 170 FGIVLRLEFYSEEELAKIVKRSARILNIE-IDEDAAEEIARRS-RGTPRIAN 219 (233)
T ss_dssp SSEEEE----THHHHHHHHHHCCHCTT-E-E-HHHHHHHHHCT-TTSHHHHH
T ss_pred cceecchhcCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHhc-CCChHHHH
Confidence 145899999999999999887532211 1246788999999 99996543
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00062 Score=67.83 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=92.8
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|-+..++.|.+++..+ +.|+||||+|+.+.+.....+.++..+|.|.+-. .+......-+..++
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~ 91 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEID 91 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEec
Confidence 456899999888888887765 8899999999999886543333332333322100 00000000000000
Q ss_pred cCCchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccccCcC----CCC------CcchhHhhhhcCCCCc
Q 045120 191 LELSEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETVKIPF----RND------SRDNNVVLLSMGSKDN 254 (374)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~----~~~------TR~~~va~~~~~~~~~ 254 (374)
.. .....+ ....+.+.+. .+++-++|+|+++... .++.|...+ +.. +....+..........
T Consensus 92 ~~-~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~ 169 (504)
T PRK14963 92 AA-SNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQH 169 (504)
T ss_pred cc-ccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEE
Confidence 00 000111 1122233222 1256789999987542 233332222 111 2222332111222347
Q ss_pred eecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 255 FLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 255 ~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
+++.+++.++..+.+.+.+......- -.+....|++.+ +|.+--+
T Consensus 170 ~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s-~GdlR~a 214 (504)
T PRK14963 170 FRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLA-DGAMRDA 214 (504)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHH
Confidence 99999999999999998775222111 135567899999 8877554
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00076 Score=70.32 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=90.3
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCC-------------------CeEEEEE
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLF-------------------DRVVFSE 171 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F-------------------~~~~wv~ 171 (374)
...++|-+..++.|.+++..+ ..|+||||+|+.+.+..-..... .-.+++.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 456999999999999888775 78999999999999864322111 0111111
Q ss_pred eCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cccccccCcC---CCC-------C
Q 045120 172 VSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL--LDLETVKIPF---RND-------S 239 (374)
Q Consensus 172 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~l~~~~---~~~-------T 239 (374)
.+....+.. .++|. ..+...-..+++-++|||++... ...+.|...+ |.. |
T Consensus 95 Aas~~kVDd-IReLi----------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 95 AASRTKVDD-TRELL----------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred cccccCHHH-HHHHH----------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 110011111 11111 11111111236779999998754 2233322211 111 3
Q ss_pred cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHH
Q 045120 240 RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTT 303 (374)
Q Consensus 240 R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ 303 (374)
....+..........|++++|+.++..+.+.+.+..... .--.+....|++.+ +|.|--+..
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S-~Gd~R~ALn 219 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAA-NGSMRDALS 219 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHc-CCCHHHHHH
Confidence 333332111122257999999999999998887642211 11235567899999 998754433
No 35
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.68 E-value=0.00028 Score=73.11 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=83.2
Q ss_pred cccccccccHHHHH---HHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 119 KVYEAFESRVSNLK---STQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 119 ~~~~~~vGr~~~~~---~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
.....|+|.+..+. .+.+.+..+ ++|+||||||+.+++... .+|. .++.+. ....+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~d------ 92 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKD------ 92 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHH------
Confidence 33456899988774 455555544 899999999999998543 3341 111110 00000
Q ss_pred HHhCcCCchhhHHHHHHHHHHHHh-cCCeEEEEEeCCCCc--cccccccCcCCCC--------Ccchh--HhhhhcCCCC
Q 045120 187 EKLGLELSEEAEYRRASRLYERLK-NENKILVILANIWKL--LDLETVKIPFRND--------SRDNN--VVLLSMGSKD 253 (374)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~--------TR~~~--va~~~~~~~~ 253 (374)
..+......+.+. .+++.+|+|||++.. ...+.+...+..+ |.+.. +.........
T Consensus 93 -----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 93 -----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhcccc
Confidence 0111122222222 125789999999743 3333343333222 23221 1111111234
Q ss_pred ceecCCCCHHHHHHHHHHhcCC------CCCCcchHHHHHHHHHHccCCc
Q 045120 254 NFLIANITEEEAWRLFKIMNGD------DVENCKFKSTAINVAKACGAGL 297 (374)
Q Consensus 254 ~~~l~~L~~~~s~~Lf~~~a~~------~~~~~~l~~~~~~I~~~c~~Gl 297 (374)
.+.+++|+.++...++.+.+.. .....--.+....|++.+ +|-
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s-~GD 210 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA-NGD 210 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC-CCC
Confidence 7999999999999999887641 111111235567888888 654
No 36
>PF14516 AAA_35: AAA-like domain
Probab=97.67 E-value=0.0011 Score=62.68 Aligned_cols=178 Identities=13% Similarity=0.171 Sum_probs=106.7
Q ss_pred cccccccHHHHHHHHHHhhc-C-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-----CCHHHHHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTN-A-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-----SDIKKIQGDIAE 187 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~-~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~ 187 (374)
....|.|...-+++.+.|.+ + +-.+|||+|...+.+..... .| .++++++..- .+...+++.++.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 34577898777778877776 3 78999999999998876644 33 3457766542 245555555554
Q ss_pred ----HhCcCCchh--------hHHHHHHHHHHHH-hc-CCeEEEEEeCCCCcccc----ccccCcC------------CC
Q 045120 188 ----KLGLELSEE--------AEYRRASRLYERL-KN-ENKILVILANIWKLLDL----ETVKIPF------------RN 237 (374)
Q Consensus 188 ----~l~~~~~~~--------~~~~~~~~l~~~L-~~-~kr~LlVlDdv~~~~~~----~~l~~~~------------~~ 237 (374)
+++....-. +.......+.+.+ .. +++.+|+||++...... ..+...+ ..
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 444332110 1122333444443 22 48999999999743211 1111100 00
Q ss_pred C--------CcchhHh---hhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 238 D--------SRDNNVV---LLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 238 ~--------TR~~~va---~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
. |...... ....+....+.|++++.+|...|...+-.... ....++|...+ ||+|.-+..++.
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~t-gGhP~Lv~~~~~ 241 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWT-GGHPYLVQKACY 241 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHH-CCCHHHHHHHHH
Confidence 0 2221111 11123334799999999999999988743311 12267899999 999999998888
No 37
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.64 E-value=0.0033 Score=57.77 Aligned_cols=156 Identities=18% Similarity=0.244 Sum_probs=96.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCC----eEEEEEeCCCCCHHHHHHHHHHHhCcCCch-hhHHHHHHHHHHHHhcCCeEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFD----RVVFSEVSQTSDIKKIQGDIAEKLGLELSE-EAEYRRASRLYERLKNENKIL 216 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~~~kr~L 216 (374)
..|+|||++++.+...+-....=+ .++.|.+...++...+...|+..++.+... .+.........+.|+.-+--+
T Consensus 69 ~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrm 148 (302)
T PF05621_consen 69 DSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRM 148 (302)
T ss_pred CCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 679999999999987653221111 467888899999999999999999988654 344455556666776545679
Q ss_pred EEEeCCCCcc------------ccccccCcCCC-----C--------CcchhHhhhhcCCCCceecCCCCH-HHHHHHHH
Q 045120 217 VILANIWKLL------------DLETVKIPFRN-----D--------SRDNNVVLLSMGSKDNFLIANITE-EEAWRLFK 270 (374)
Q Consensus 217 lVlDdv~~~~------------~~~~l~~~~~~-----~--------TR~~~va~~~~~~~~~~~l~~L~~-~~s~~Lf~ 270 (374)
||+|.+.+.- .+..|...+.- | ..+.+.+. .+ .++.|+.-.. ++...|+.
T Consensus 149 LIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~-RF---~~~~Lp~W~~d~ef~~LL~ 224 (302)
T PF05621_consen 149 LIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS-RF---EPFELPRWELDEEFRRLLA 224 (302)
T ss_pred EEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh-cc---CCccCCCCCCCcHHHHHHH
Confidence 9999997531 12222222211 1 34444432 22 2455555433 34555554
Q ss_pred HhcC----CCCCCcchHHHHHHHHHHccCCchHHHH
Q 045120 271 IMNG----DDVENCKFKSTAINVAKACGAGLFCTLT 302 (374)
Q Consensus 271 ~~a~----~~~~~~~l~~~~~~I~~~c~~GlPLai~ 302 (374)
.... ....+-...++++.|...+ +|+.=-+.
T Consensus 225 s~e~~LPLr~~S~l~~~~la~~i~~~s-~G~iG~l~ 259 (302)
T PF05621_consen 225 SFERALPLRKPSNLASPELARRIHERS-EGLIGELS 259 (302)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHc-CCchHHHH
Confidence 4332 2222234468899999999 99875443
No 38
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0025 Score=60.69 Aligned_cols=181 Identities=12% Similarity=0.048 Sum_probs=100.1
Q ss_pred ccccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCC--CCeEEEEEeCCCCCHHHHHHHH
Q 045120 118 NKVYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKL--FDRVVFSEVSQTSDIKKIQGDI 185 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i 185 (374)
|.....++|-+.....+...+..+ ..|+||||||..+.+..-.... +... .....+.-....+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 344567999999999999998876 7899999999998886532110 1111 011111112223333
Q ss_pred HHHhC-------cCCc--------hhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--c----cccccCcCCCC--
Q 045120 186 AEKLG-------LELS--------EEAEYRRASRLYERLK----NENKILVILANIWKLL--D----LETVKIPFRND-- 238 (374)
Q Consensus 186 ~~~l~-------~~~~--------~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~----~~~l~~~~~~~-- 238 (374)
...-. .+.. .-+. +....+.+++. .+++-++|+|++.... . +..+..+-+..
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 22211 0000 0111 22334555554 2467799999998542 1 22232221112
Q ss_pred ---C-cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 239 ---S-RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 239 ---T-R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
| +...+..........+++.+++.++..+++........ --......|+..+ +|.|.....+..
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s-~G~pr~Al~ll~ 242 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRS-KGSVRKALLLLN 242 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHc-CCCHHHHHHHHh
Confidence 2 22122111112224899999999999999987432211 1134466889999 999987766654
No 39
>PLN03025 replication factor C subunit; Provisional
Probab=97.61 E-value=0.0012 Score=62.09 Aligned_cols=168 Identities=11% Similarity=0.079 Sum_probs=87.8
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFD-RVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|.+..++.|..++..+ +.|+||||+|+.+.+...- ..|. .++-++.+...+.. ..++++..+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHHHHH
Confidence 456889888888888777654 8899999999999886431 1232 22223333322222 1222222111
Q ss_pred cCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--c---cccccCcCCCCCc-------chhHhhhhcCCCCceecC
Q 045120 191 LELSEEAEYRRASRLYERLKNENKILVILANIWKLL--D---LETVKIPFRNDSR-------DNNVVLLSMGSKDNFLIA 258 (374)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~---~~~l~~~~~~~TR-------~~~va~~~~~~~~~~~l~ 258 (374)
.... .+..++.-+++||++.... . +..+....+..|| ...+..........++++
T Consensus 90 ~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 90 QKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred hccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 0000 0011246688999987542 1 2111111122221 111100001112478999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHH
Q 045120 259 NITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 259 ~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
+++.++....+...+......-. .+....|++.|+|.+.-++..+
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999998887753221111 3456789999944444555444
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.60 E-value=0.00046 Score=56.11 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 125 ESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 125 vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
+|++..+..+...+... ..|+|||||++.+++... ..-..++++..+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhh
Confidence 37788888888888762 889999999999999654 11234566655443
No 41
>PRK04195 replication factor C large subunit; Provisional
Probab=97.56 E-value=0.00094 Score=66.60 Aligned_cols=159 Identities=12% Similarity=0.147 Sum_probs=86.9
Q ss_pred ccccccccHHHHHHHHHHhhc------C-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 120 VYEAFESRVSNLKSTQNALTN------A-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~------~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
....++|.+..++.+.+|+.. . +.|+||||+|+.++++.. |+ .+-++.+...+.. ....++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 355699999999999998862 1 889999999999999653 33 3334444433322 222222
Q ss_pred HHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc------cccccCcCCCC-------Ccc-hhHhh-hhcCC
Q 045120 187 EKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD------LETVKIPFRND-------SRD-NNVVL-LSMGS 251 (374)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~-------TR~-~~va~-~~~~~ 251 (374)
........ .... ++-+||||++..... +..+...+... +.. ..+.. .....
T Consensus 86 ~~~~~~~s-------------l~~~-~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 86 GEAATSGS-------------LFGA-RRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred HHhhccCc-------------ccCC-CCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhcc
Confidence 22211000 0012 578999999975421 22221111110 100 00000 01112
Q ss_pred CCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHH
Q 045120 252 KDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCT 300 (374)
Q Consensus 252 ~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLa 300 (374)
...+.+.+++.++....+.+.+......-. .++...|++.| +|-.-.
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s-~GDlR~ 198 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERS-GGDLRS 198 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHc-CCCHHH
Confidence 346889999999998888877642211111 35567888888 664443
No 42
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.005 Score=59.25 Aligned_cols=186 Identities=14% Similarity=0.100 Sum_probs=108.6
Q ss_pred cccccccccHHHHHHHHHHhhcC-------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA-------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDI 185 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~-------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 185 (374)
..+..++||+.+++.+.+++... -+|.|||.+...++.+......=.++++++...-....+++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 33456899999999999998765 77999999999999876432221345777666555667777777
Q ss_pred HHHhC-cCCchhhHHHHHHHHHHHHhcCC-eEEEEEeCCCCc-----cccccc--cCcCCCC-------------Ccchh
Q 045120 186 AEKLG-LELSEEAEYRRASRLYERLKNEN-KILVILANIWKL-----LDLETV--KIPFRND-------------SRDNN 243 (374)
Q Consensus 186 ~~~l~-~~~~~~~~~~~~~~l~~~L~~~k-r~LlVlDdv~~~-----~~~~~l--~~~~~~~-------------TR~~~ 243 (374)
...+- .........+....+.+...+.+ -+|+|||..+.. ..+..+ ...+|.. |++--
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 77762 11111222344455555555433 789999998642 112221 1112222 22221
Q ss_pred Hh-hh-hcCCCCceecCCCCHHHHHHHHHHhcCCCCC----CcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 244 VV-LL-SMGSKDNFLIANITEEEAWRLFKIMNGDDVE----NCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 244 va-~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~----~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
.- .. ..-....+..+|-+.++-.++|......... +..++-.|++++.-. |.+--|+.+.-
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S-GDlRkaLdv~R 373 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS-GDLRKALDVCR 373 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc-hhHHHHHHHHH
Confidence 10 00 1122347788999999999999988753322 223333444444444 55555555444
No 43
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.55 E-value=0.0017 Score=61.47 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=88.6
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCH-HHHHH---HHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFD-RVVFSEVSQTSDI-KKIQG---DIA 186 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~---~i~ 186 (374)
...++|++..++.+.+++..+ +.|+||||+|+.+.+.... ..++ ..+.++++...+. ...+. ...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchh
Confidence 456889999999999988765 8899999999999885432 1222 2344444321100 00000 000
Q ss_pred HHhCcC-CchhhHHHHHHHHHHHHh-----cCCeEEEEEeCCCCcc--cccccc---CcCCCC-------CcchhHhhhh
Q 045120 187 EKLGLE-LSEEAEYRRASRLYERLK-----NENKILVILANIWKLL--DLETVK---IPFRND-------SRDNNVVLLS 248 (374)
Q Consensus 187 ~~l~~~-~~~~~~~~~~~~l~~~L~-----~~kr~LlVlDdv~~~~--~~~~l~---~~~~~~-------TR~~~va~~~ 248 (374)
..++.. ....+..+....+.+... ...+-+||+||+.... ....+. ...+.. +....+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 000011111222211111 0134589999996442 111121 112221 2222221111
Q ss_pred cCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 249 MGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 249 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
......+.+.+++.++...++.+.+...... --.+....+++.+ +|.+-.+
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~-~gdlr~l 223 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYA-GGDLRKA 223 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHH
Confidence 1122468889999999999988876422211 1145667888999 6655444
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0021 Score=65.13 Aligned_cols=172 Identities=13% Similarity=0.165 Sum_probs=89.5
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|.+..++.|.+++..+ +.|+||||+|+.+.+..-... ++. +..++.....+.|...-
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~-~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVT-STPCEVCATCKAVNEGR 85 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCC-CCCCccCHHHHHHhcCC
Confidence 3567999999999999998866 779999999999987543211 110 01111111111111110
Q ss_pred CcCC------chhhHHHHHHHHHHHH----hcCCeEEEEEeCCCCcc--ccccc----cCcCCCC-----Ccc-hhHhhh
Q 045120 190 GLEL------SEEAEYRRASRLYERL----KNENKILVILANIWKLL--DLETV----KIPFRND-----SRD-NNVVLL 247 (374)
Q Consensus 190 ~~~~------~~~~~~~~~~~l~~~L----~~~kr~LlVlDdv~~~~--~~~~l----~~~~~~~-----TR~-~~va~~ 247 (374)
.... .....++ .+.+.... ..+++-++|+|++.... ....| ..+-+.. |.+ ..+...
T Consensus 86 hpDviEIDAAs~~~Vdd-IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 86 FIDLIEIDAASRTKVED-TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCceEEecccccCCHHH-HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 0000 0001111 11122211 12356689999997542 22222 2221111 222 222111
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
.......+++.+|+.++..+.+.+.+......- -.+....|++.+ +|.+-.+
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S-~GdLRdA 216 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESA-QGSLRDA 216 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHH
Confidence 122235799999999999998887765322111 134556888999 7766443
No 45
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0023 Score=63.95 Aligned_cols=163 Identities=11% Similarity=0.156 Sum_probs=86.8
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCC-------------------CeEEEE
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLF-------------------DRVVFS 170 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F-------------------~~~~wv 170 (374)
...+++|-+..++.|.+++..+ +.|+||||+|+.+.+..-....+ .-++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3567999999999999999765 88999999999998754322111 112222
Q ss_pred EeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--ccccc----ccCcCCCC------
Q 045120 171 EVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL--LDLET----VKIPFRND------ 238 (374)
Q Consensus 171 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~----l~~~~~~~------ 238 (374)
..+....+.++ +++++.+. ..-..++.-++|+|+|... ...+. +..+-+..
T Consensus 94 daas~~~v~~i-R~l~~~~~----------------~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIP----------------YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccccCCHHHH-HHHHHHHh----------------hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 22211122211 11111111 0001235668889998753 22222 22221111
Q ss_pred CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 239 SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 239 TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
|....+..........+++.+++.++-...+.+.+......- -......|++.+ +|.|--+
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s-~GslR~a 217 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAA-NGSVRDA 217 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCcHHHH
Confidence 222222211112224688999999887777666654221111 124456788899 8877544
No 46
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0021 Score=65.28 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=90.1
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCC--CeEEEEEeCCCCCHHHHHHHHHH
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLF--DRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
...+++|-+..+..|.+++..+ ..|+||||+|+.+.+..-..+.. .... ...++.....+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHc
Confidence 3556899999999999988776 88999999999997643221110 0000 011122222222211
Q ss_pred HhCcCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccccCcC---CCC-------CcchhHh
Q 045120 188 KLGLEL------SEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETVKIPF---RND-------SRDNNVV 245 (374)
Q Consensus 188 ~l~~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~---~~~-------TR~~~va 245 (374)
.-.... .....++. ..+.+.+. .++.-++|||+|.... ..+.+...+ |.. |....+.
T Consensus 90 g~h~D~~eldaas~~~Vd~i-Reli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEV-QQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCCceeecCcccccCHHHH-HHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 000000 00111111 12222221 1245589999998542 233332222 121 2222332
Q ss_pred hhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 246 LLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 246 ~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
.........+++++|+.++..+.+.+.+......- -.+....|++.+ +|.+--+
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s-~GslR~a 222 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAA-RGSMRDA 222 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHH
Confidence 22222335799999999999888887764222111 134566888899 7766444
No 47
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0034 Score=62.07 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=89.9
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhc-------------------CCCCeEEEE
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQARED-------------------KLFDRVVFS 170 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 170 (374)
....++|-+..++.+.+.+..+ +.|+||||+|+.+....-.. +.+.-++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3567899999999888888765 88999999999987632111 011122333
Q ss_pred EeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccc----ccCcCCCC------
Q 045120 171 EVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLET----VKIPFRND------ 238 (374)
Q Consensus 171 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~----l~~~~~~~------ 238 (374)
+.+...++.++ ++|++... ..=..+++-++|+|++.... ..+. +..+-+..
T Consensus 91 daas~~~vddI-R~Iie~~~----------------~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSC----------------YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ecccCCCHHHH-HHHHHHHH----------------hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 33322222221 11111110 00001256689999986432 2222 22222222
Q ss_pred CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 239 SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 239 TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
|....+..........+++.+++.++....+.+.+......- -.+....|++.+ +|.+-.+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s-~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENS-SGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHH
Confidence 444444322223335789999999999999888775322111 134556888999 8877543
No 48
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.48 E-value=0.00014 Score=68.61 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=101.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF-DRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILA 220 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlD 220 (374)
.|||||||++-++.+ .. .-| +.+.++....-.+...+.-.+...++.+.... +.....+...+.. +|.++|+|
T Consensus 22 ~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~~-rr~llvld 95 (414)
T COG3903 22 AGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIGD-RRALLVLD 95 (414)
T ss_pred cCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHhh-hhHHHHhc
Confidence 999999999999988 33 447 56777877777777777777777677665431 2233455666666 89999999
Q ss_pred CCCCccc-----cccccCcCCCC----CcchhHhhhhcCCCCceecCCCCHH-HHHHHHHHhcCCC----CCCcchHHHH
Q 045120 221 NIWKLLD-----LETVKIPFRND----SRDNNVVLLSMGSKDNFLIANITEE-EAWRLFKIMNGDD----VENCKFKSTA 286 (374)
Q Consensus 221 dv~~~~~-----~~~l~~~~~~~----TR~~~va~~~~~~~~~~~l~~L~~~-~s~~Lf~~~a~~~----~~~~~l~~~~ 286 (374)
|..+..+ ...+....+.. |-.+.+ .......+.+++|+.. ++.++|...+... .....-....
T Consensus 96 ncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v 172 (414)
T COG3903 96 NCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAV 172 (414)
T ss_pred CcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHH
Confidence 9875522 11222222222 222222 2334457788888765 7889988776411 1122224566
Q ss_pred HHHHHHccCCchHHHHHHhc
Q 045120 287 INVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 287 ~~I~~~c~~GlPLai~~ig~ 306 (374)
.+|.++. .|.||+|...++
T Consensus 173 ~~icr~l-dg~~laielaaa 191 (414)
T COG3903 173 AEICRRL-DGIPLAIELAAA 191 (414)
T ss_pred HHHHHHh-hcchHHHHHHHH
Confidence 7999999 999999999887
No 49
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0034 Score=62.96 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=89.7
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcC-------------------CCCeEEEE
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDK-------------------LFDRVVFS 170 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv 170 (374)
....++|-+..++.|.+.+..+ +.|+||||+|+.+.+...... .|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3456899999999999988765 889999999999987432111 11122222
Q ss_pred EeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ccccccCc---CCCC-------
Q 045120 171 EVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVKIP---FRND------- 238 (374)
Q Consensus 171 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~---~~~~------- 238 (374)
.......+.+ ..+..+.+...-..+++-++|+|++.... ..+.|... .|..
T Consensus 94 daas~~gvd~-----------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 94 DAASRTGVEE-----------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred ecccccCHHH-----------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 2211111111 11112222211112356799999987432 22222221 1222
Q ss_pred CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCch-HHHHHH
Q 045120 239 SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLF-CTLTTN 304 (374)
Q Consensus 239 TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlP-Lai~~i 304 (374)
|....+..........+++.+++.++-...+.+.+...... --......|++.+ +|.+ -|+..+
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-~e~~Al~~Ia~~s-~GdlR~alnlL 221 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN-SDEQSLEYIAYHA-KGSLRDALSLL 221 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 32222321112223579999999999887877755422111 1234456788899 8865 444444
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.001 Score=65.24 Aligned_cols=170 Identities=12% Similarity=0.138 Sum_probs=90.8
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|-+..+..|..++..+ +.|+||||+|+.+.+.......... .......+ ...|....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITKGI 88 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHccC
Confidence 3456899999999999988765 7899999999999885432111000 00000111 11222111
Q ss_pred CcCC---c---hhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cccccccCcC----CCC------CcchhHhhh
Q 045120 190 GLEL---S---EEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVKIPF----RND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~~---~---~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~----~~~------TR~~~va~~ 247 (374)
.... . ....+ ....+.+.+. .++.-++|+|++... ..++.|...+ ... |....+...
T Consensus 89 ~~dviEIdaas~~gVd-~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 89 SSDVLEIDAASNRGIE-NIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CccceeechhhcccHH-HHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 1110 0 00111 1222222222 235669999999854 2344433222 111 333333221
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC 299 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL 299 (374)
.......|.+.+++.++-.+.+.+.+...... --.+....|++.+ +|.|-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S-~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKG-DGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CChHH
Confidence 22223469999999999888888776422111 1135567899999 88773
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0023 Score=65.26 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=86.5
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCC-------------------CCeEEEE
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKL-------------------FDRVVFS 170 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv 170 (374)
....++|.+..++.|.+++..+ ..|+||||+|+.+.+..-.... |.-.+.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3567999999999999998876 7799999999998775322111 1011112
Q ss_pred EeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc--cc----cccCcCCCC-----C
Q 045120 171 EVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD--LE----TVKIPFRND-----S 239 (374)
Q Consensus 171 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~--~~----~l~~~~~~~-----T 239 (374)
+.+....+.. .+++ .......-..+++-++|+|++..... .. .+..+-+.. |
T Consensus 94 daAs~~gVd~-IRel----------------le~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 94 DAASNTGIDN-IREV----------------LENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred eccccCCHHH-HHHH----------------HHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 1111111110 1111 11110000112567899999875421 22 222211111 2
Q ss_pred -cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 240 -RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 240 -R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
....+.....+....+.+.+++.++....+.+.+...... --......|++.+ +|.+--+
T Consensus 157 td~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A-~GslRdA 217 (709)
T PRK08691 157 TDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAA-AGSMRDA 217 (709)
T ss_pred CCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHh-CCCHHHH
Confidence 1222211111222367888999999988888776522211 1134567899999 8877444
No 52
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.43 E-value=0.0044 Score=58.15 Aligned_cols=162 Identities=10% Similarity=0.133 Sum_probs=84.1
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe--CCCCCHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV--SQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l 189 (374)
...++|++..++.+..++..+ ..|+||||+|+.+.+...... +.. .++.+ +.......+. ..+..+
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~~~~-~~i~~~ 92 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGIDVIR-NKIKEF 92 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchHHHH-HHHHHH
Confidence 456889999999999998765 789999999999988653221 211 22222 2222211111 111111
Q ss_pred CcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccc---CcCCCC------C-cchhHhhhhcCCCCceec
Q 045120 190 GLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVK---IPFRND------S-RDNNVVLLSMGSKDNFLI 257 (374)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~---~~~~~~------T-R~~~va~~~~~~~~~~~l 257 (374)
....+ .....+-++++|++.... ....+. ...+.. + ....+..........+++
T Consensus 93 ~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 93 ARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 00000 000135578888875431 111121 111111 1 111111000111236889
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 258 ANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 258 ~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
++++.++....+...+...... --.+....+++.+ +|.+--+
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~-~gd~r~~ 200 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVS-EGDMRKA 200 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHH
Confidence 9999999988888877522211 1134567889999 7776553
No 53
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00064 Score=65.02 Aligned_cols=181 Identities=13% Similarity=0.060 Sum_probs=95.4
Q ss_pred cccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEE----EEeCCCCCHHHHHHH
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVF----SEVSQTSDIKKIQGD 184 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~w----v~vs~~~~~~~~~~~ 184 (374)
.....++|-+...+.+.+.+..+ +.|+||||||..+.+..-.......... .++. ........+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHH
Confidence 34567999999999999998876 8899999999888775432221110000 0000 0000111111
Q ss_pred HHHHhCcC-------Cchhh-------HHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--c----cccccCcCCCC--
Q 045120 185 IAEKLGLE-------LSEEA-------EYRRASRLYERLK----NENKILVILANIWKLL--D----LETVKIPFRND-- 238 (374)
Q Consensus 185 i~~~l~~~-------~~~~~-------~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~----~~~l~~~~~~~-- 238 (374)
|...-... ..+.. .-+.+..+.+.+. .+++-++|+|++...+ . +..+..+-+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111000 00000 0122344444443 2356799999987542 2 22222222222
Q ss_pred ---Ccch-hHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 239 ---SRDN-NVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 239 ---TR~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
|.+. .+..........+.+.+++.++..+++........ ......++..+ +|.|+.+..+..
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s-~Gsp~~Al~ll~ 240 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALA-EGSVGRALRLAG 240 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHc-CCCHHHHHHHhc
Confidence 2222 22221223335899999999999999987653211 11125788999 999987666654
No 54
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0035 Score=63.98 Aligned_cols=175 Identities=12% Similarity=0.109 Sum_probs=92.3
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|-+..++.|.+.+..+ ..|+||||+|+.+.+..-....+. +..+........|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCC
Confidence 3567999999999999988775 789999999999987543211110 01111122222222110
Q ss_pred CcC-----Cc-hhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccc----cCcCCCC------CcchhHhhh
Q 045120 190 GLE-----LS-EEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETV----KIPFRND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~-----~~-~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l----~~~~~~~------TR~~~va~~ 247 (374)
... .. ....++ ...+.+.+. .+++-++|||++.... ..+.| ..+-+.. |....+...
T Consensus 87 ~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 87 FVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 000 00 011111 122222221 2366789999997432 22222 2222222 333333211
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
...-...+++.+|+.++....+.+........ .-......|++.+ +|.|-.+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s-~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAA-DGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHHHHH
Confidence 12223479999999999999888766321111 1134456888999 8877644333
No 55
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.42 E-value=0.00095 Score=62.49 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=106.2
Q ss_pred cccccccHHHHHHHHHHhhcC------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
...|.+|+..+..+...+.+. -.|.|||.+.+++++.... ..+|+++-..++..-++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHH
Confidence 345789999999999988765 5699999999999997642 25899999999999999999999
Q ss_pred hCcCC-chh-hH--HH----HHHHHHH--HHhc-CCeEEEEEeCCCCccccccccCc----------CCCC------Ccc
Q 045120 189 LGLEL-SEE-AE--YR----RASRLYE--RLKN-ENKILVILANIWKLLDLETVKIP----------FRND------SRD 241 (374)
Q Consensus 189 l~~~~-~~~-~~--~~----~~~~l~~--~L~~-~kr~LlVlDdv~~~~~~~~l~~~----------~~~~------TR~ 241 (374)
.+... +.. .. .+ ....+.+ ...+ ++.++||||++....+.+.+..+ .+.. +--
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 96322 221 11 11 2222322 1112 25899999999876554442111 1110 111
Q ss_pred hhHhhhhcCCCC--ceecCCCCHHHHHHHHHHhcCCCCC----CcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 242 NNVVLLSMGSKD--NFLIANITEEEAWRLFKIMNGDDVE----NCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 242 ~~va~~~~~~~~--~~~l~~L~~~~s~~Lf~~~a~~~~~----~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
+..-...+|... ++..+.-+.+|-.++|.+.-.+... ..-+.-+..-....| + -|-++..+.+
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~c-r-d~~eL~~~~~ 228 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMAC-R-DVNELRSLIS 228 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHH
Confidence 111111234333 4566777888888887764431110 111222333444566 5 5555555554
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.34 E-value=0.0016 Score=62.50 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=84.3
Q ss_pred cccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
.....+.|++..+++|.+.+... ++|+|||+||+.+++... ..| +.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~--- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVV--- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecc---
Confidence 33456889999999998876321 889999999999998553 223 2221
Q ss_pred CHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------------ccccccCc---CC-
Q 045120 177 DIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL----------------DLETVKIP---FR- 236 (374)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~----------------~~~~l~~~---~~- 236 (374)
...+... .++ ........+.+........+|+||+++... .+..+... +.
T Consensus 189 -~~~l~~~---~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 -GSELVRK---YIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -hHHHHHH---hhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111111 011 111222333333333357899999986431 01111111 11
Q ss_pred -CC------Ccchh-Hhhhhc---CCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCch
Q 045120 237 -ND------SRDNN-VVLLSM---GSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLF 298 (374)
Q Consensus 237 -~~------TR~~~-va~~~~---~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlP 298 (374)
.+ |.... +..... .-...+.++..+.++..++|..++......++.. ...+++.+ .|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~--~~~la~~t-~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD--LEAIAKMT-EGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC--HHHHHHHc-CCCC
Confidence 11 22211 111011 1234788999999999999998876433222111 24677777 6654
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.32 E-value=0.0016 Score=57.92 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhh
Q 045120 127 RVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEA 197 (374)
Q Consensus 127 r~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 197 (374)
.+..++.+.+++... ..|+|||+||+.+++.... .....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHH------hH------------
Confidence 445666777765332 8899999999999986542 233456665432211 00
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCcc---cc-ccccCcC----C--CC----Ccc---------hhHhhhhcCCCCc
Q 045120 198 EYRRASRLYERLKNENKILVILANIWKLL---DL-ETVKIPF----R--ND----SRD---------NNVVLLSMGSKDN 254 (374)
Q Consensus 198 ~~~~~~~l~~~L~~~kr~LlVlDdv~~~~---~~-~~l~~~~----~--~~----TR~---------~~va~~~~~~~~~ 254 (374)
..+...+.+ .-+|||||+.... .| +.+...+ . .. |+. ..+ .........
T Consensus 82 -----~~~~~~~~~--~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L-~~r~~~~~~ 153 (226)
T TIGR03420 82 -----PEVLEGLEQ--ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDL-RTRLAWGLV 153 (226)
T ss_pred -----HHHHhhccc--CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHH-HHHHhcCee
Confidence 011112222 3488899987432 11 1121110 0 01 111 112 112222457
Q ss_pred eecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 255 FLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 255 ~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
+.+++++.++-..++...+...... --.+....|++.+ +|.|..+.-+-
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~l~~L~~~~-~gn~r~L~~~l 202 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGLQ-LPDEVADYLLRHG-SRDMGSLMALL 202 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhc-cCCHHHHHHHH
Confidence 9999999999999998765311111 1134556788889 99888776553
No 58
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.30 E-value=0.0019 Score=60.18 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=71.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
++|+||||||+.+.+..+... ..||..|-...-..-.+.|.++-. . ...|. ++|..|.+|.
T Consensus 170 ppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq-------------~-~~~l~-krkTilFiDE 230 (554)
T KOG2028|consen 170 PPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ-------------N-EKSLT-KRKTILFIDE 230 (554)
T ss_pred CCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH-------------H-HHhhh-cceeEEEeHH
Confidence 899999999999998665333 568888876554444445544431 1 11122 3789999999
Q ss_pred CCC--ccccccccCcCCCC--------CcchhHh--hhhcCCCCceecCCCCHHHHHHHHHHhc
Q 045120 222 IWK--LLDLETVKIPFRND--------SRDNNVV--LLSMGSKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 222 v~~--~~~~~~l~~~~~~~--------TR~~~va--~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
|.. ..+-+.|.+..-+| |-+...- ......-.++-|++|+.++-..++.+..
T Consensus 231 iHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 231 IHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 963 34455555554444 3222210 0122334588899999999999988844
No 59
>PF13173 AAA_14: AAA domain
Probab=97.29 E-value=0.00022 Score=57.61 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=57.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
+.|+|||||+++++.+.. ....+++++........... .+..+.+.+.... ++.+|+||+
T Consensus 10 ~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~~~-~~~~i~iDE 69 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PDLLEYFLELIKP-GKKYIFIDE 69 (128)
T ss_pred CCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hhhHHHHHHhhcc-CCcEEEEeh
Confidence 779999999999998654 23456777655432211000 0022233333333 578999999
Q ss_pred CCCccccccccCcC----CCC-----CcchhHh-----hhhcCCCCceecCCCCHHHH
Q 045120 222 IWKLLDLETVKIPF----RND-----SRDNNVV-----LLSMGSKDNFLIANITEEEA 265 (374)
Q Consensus 222 v~~~~~~~~l~~~~----~~~-----TR~~~va-----~~~~~~~~~~~l~~L~~~~s 265 (374)
+....+|......+ ++. +...... ....|....++|.||+-.|-
T Consensus 70 iq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 70 IQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 98877666543221 121 1111111 11223334688999987763
No 60
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.29 E-value=0.0069 Score=57.81 Aligned_cols=165 Identities=14% Similarity=0.179 Sum_probs=88.2
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhc--------------------CCCCeEEE
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQARED--------------------KLFDRVVF 169 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~w 169 (374)
....++|.+..++.+.+++..+ +.|+||||+|+.+....... .+|+. ++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 3456899999999999988765 88999999999887754211 12222 22
Q ss_pred EEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cccccccCcC---CCC------
Q 045120 170 SEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL--LDLETVKIPF---RND------ 238 (374)
Q Consensus 170 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~l~~~~---~~~------ 238 (374)
++-+....... .+.+...+... -..+ ++-++|+|++... .....+...+ |..
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~---------------p~~~-~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYA---------------PSSG-KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcC---------------cccC-CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 22211111111 11122211100 0112 4558889987543 2222221111 111
Q ss_pred C-cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHH
Q 045120 239 S-RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 239 T-R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
| ....+..........+++.+++.++..+.+...+......- -.+....+++.+ +|.|..+...
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~-~g~~~~a~~~ 218 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAA-DGSLRDALSL 218 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCChHHHHHH
Confidence 2 22222111111224788899999999888887664222111 135667889999 9988655433
No 61
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.012 Score=57.00 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=50.4
Q ss_pred CeEEEEEeCCCCcc--c----cccccCcCCCC------CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCc
Q 045120 213 NKILVILANIWKLL--D----LETVKIPFRND------SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENC 280 (374)
Q Consensus 213 kr~LlVlDdv~~~~--~----~~~l~~~~~~~------TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~ 280 (374)
++-++|+|++.... . +..+..|-+.. |....+..........+.+.+++.++..+.+.+..+. +
T Consensus 117 ~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~- 192 (394)
T PRK07940 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D- 192 (394)
T ss_pred CcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C-
Confidence 45588889987542 2 22233332222 3333332211222348999999999999888754321 1
Q ss_pred chHHHHHHHHHHccCCchHHHHHHh
Q 045120 281 KFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 281 ~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
.+.+..++..+ +|.|.....+.
T Consensus 193 --~~~a~~la~~s-~G~~~~A~~l~ 214 (394)
T PRK07940 193 --PETARRAARAS-QGHIGRARRLA 214 (394)
T ss_pred --HHHHHHHHHHc-CCCHHHHHHHh
Confidence 24466889999 99997664443
No 62
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.0079 Score=61.21 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=92.9
Q ss_pred cccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCe--EEEEEeCCCCCHHHHHHHHH
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDR--VVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i~ 186 (374)
.....++|.+..++.|.+.+..+ +.|+||||+|+.+.+..-....... ..+ ..+......+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHh
Confidence 33567999999999999988766 8899999999999885432211100 000 0111111112222
Q ss_pred HHhCcCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccc----cCcCCCC------CcchhH
Q 045120 187 EKLGLEL------SEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETV----KIPFRND------SRDNNV 244 (374)
Q Consensus 187 ~~l~~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l----~~~~~~~------TR~~~v 244 (374)
....... .....++ +..+.+.+. ..++-++|+|++.... ..+.| ..+.+.. |....+
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred cCCCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 2111110 0011111 122222222 1245678999986442 22222 2222222 333333
Q ss_pred hhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHH
Q 045120 245 VLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLT 302 (374)
Q Consensus 245 a~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~ 302 (374)
..........+++.+++.++....+.+.+......- -.+....|+..+ +|.+.-+.
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a-~Gdlr~al 231 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAA-EGSVRDGL 231 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHHH
Confidence 221122224789999999999988888764221111 125566888999 88876553
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.23 E-value=0.0061 Score=64.74 Aligned_cols=140 Identities=13% Similarity=0.181 Sum_probs=76.7
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcC----CCCeEEE-EEeCCCCCHHHHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDK----LFDRVVF-SEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~----~F~~~~w-v~vs~~~~~~~~~~~i~ 186 (374)
..+++||+.++.+++..|... .+|+||||||..+........ -.+..+| +.++.-..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a--------- 256 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA--------- 256 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc---------
Confidence 356999999999999988765 889999999999988643211 1123333 22221000
Q ss_pred HHhCcCCchhhHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-------ccc---cccCcCCCC-------CcchhH----
Q 045120 187 EKLGLELSEEAEYRRASRLYERLK-NENKILVILANIWKLL-------DLE---TVKIPFRND-------SRDNNV---- 244 (374)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~~-------~~~---~l~~~~~~~-------TR~~~v---- 244 (374)
+.... ..-+.....+.+.+. .+++.+|++|++.... ..+ .|.+.+..+ |.....
T Consensus 257 ---g~~~~-ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 257 ---GASVK-GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYF 332 (852)
T ss_pred ---ccccc-hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhh
Confidence 00011 111122223333332 2368999999986431 111 133344444 332211
Q ss_pred h--hhhcCCCCceecCCCCHHHHHHHHHHhc
Q 045120 245 V--LLSMGSKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 245 a--~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
. ......-..+.+++++.++..+++....
T Consensus 333 ~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 333 EKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 0 0001112379999999999999975444
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0085 Score=60.48 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=91.3
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|.+..++.+.+++..+ +.|+||||+|+.+.+.....+ |... ..++.....+.+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTNQ 86 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcCC
Confidence 3457899999999999988664 889999999999987543211 1111 1112222222222111
Q ss_pred CcCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cccccccC----cCCCC------CcchhHhhh
Q 045120 190 GLEL------SEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVKI----PFRND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~----~~~~~------TR~~~va~~ 247 (374)
.... .....++ .+.+.+.+. .+++-++|+|++... ..+..|.. |.+.. +....+...
T Consensus 87 h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 SVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 1000 0001111 112222111 113446999998743 22222222 21121 333333211
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCch-HHHHHHhc
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLF-CTLTTNAS 306 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlP-Lai~~ig~ 306 (374)
.......+++.+++.++....+...+......- -.+.+..+++.+ +|.| .|+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS-~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLA-DGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCcHHHHHHHHHH
Confidence 122234789999999999988887664221111 134566888999 7755 45555443
No 65
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0059 Score=61.40 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=84.6
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCC-------------------CCeEEEEE
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKL-------------------FDRVVFSE 171 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~ 171 (374)
...++|-+..++.+.+++..+ +.|+||||+|+.+.+..-.... |.-.+++.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 456899999999999988765 8899999999999875432111 11112222
Q ss_pred eCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCccc--cc----cccCcCCCC---
Q 045120 172 VSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLK----NENKILVILANIWKLLD--LE----TVKIPFRND--- 238 (374)
Q Consensus 172 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~~--~~----~l~~~~~~~--- 238 (374)
.+.... .++ ...+.+... .+++-++|+|++..... .+ .+..+-+..
T Consensus 95 ~~~~~~--------------------vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 95 AASNTQ--------------------VDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred ccccCC--------------------HHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 111111 111 111222221 13567899999875422 22 222221111
Q ss_pred --C-cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH
Q 045120 239 --S-RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC 299 (374)
Q Consensus 239 --T-R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL 299 (374)
| ....+..........+++.+++.++..+.+.+.+...... .-......|++.+ +|.+-
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s-~Gslr 215 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAA-AGSMR 215 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHH
Confidence 2 2222211011112378899999999888887766422111 1134456788899 88775
No 66
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0046 Score=60.09 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=90.4
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEE-eCCCCCHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSE-VSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l 189 (374)
..+++|-+..++.|.+++..+ +.|+||||+|..+.+.......++...|.. ....+......+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 456899999999999888875 889999999999988654322111111110 011111111222222111
Q ss_pred CcCC---c--hhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccc----cCcCCCC------CcchhHhhhh
Q 045120 190 GLEL---S--EEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETV----KIPFRND------SRDNNVVLLS 248 (374)
Q Consensus 190 ~~~~---~--~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l----~~~~~~~------TR~~~va~~~ 248 (374)
.... . .....+.+..+.+.+. .+++-++|+|++.... .++.+ ..+.+.. ++...+....
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 1110 0 0000111222333332 1256688999987542 23332 2222222 3333332111
Q ss_pred cCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH
Q 045120 249 MGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC 299 (374)
Q Consensus 249 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL 299 (374)
......+++.+++.++..+.+...+..... .--.+.+..|+..+ +|.+-
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s-~g~lr 223 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKA-QGSMR 223 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHc-CCCHH
Confidence 111236889999999988888776632111 11135667889999 88664
No 67
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.008 Score=61.37 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=92.2
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|-+..++.|.+++..+ ..|+||||+|+.+.+.......+. -...++.....+.|....+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 457899999999999888765 789999999999987543211100 0112222333333333222
Q ss_pred cCC------chhhHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--ccccccc----CcCCCC------CcchhHhhhh
Q 045120 191 LEL------SEEAEYRRASRLYERLKN----ENKILVILANIWKL--LDLETVK----IPFRND------SRDNNVVLLS 248 (374)
Q Consensus 191 ~~~------~~~~~~~~~~~l~~~L~~----~kr~LlVlDdv~~~--~~~~~l~----~~~~~~------TR~~~va~~~ 248 (374)
... .....++ ...+.+.+.. .++-++|+|++... ...+.|. .+-+.. +....+....
T Consensus 89 ~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110 0011111 1222222221 25678999998643 2233332 221111 2222222111
Q ss_pred cCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 249 MGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 249 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
......+.+..++.++....+.+.+......- -.+....|+..| +|.+..+
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s-~Gdlr~a 218 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAA-TGSMRDA 218 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHH
Confidence 12224688889999998888887765322111 135567889999 8888644
No 68
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.15 E-value=0.0062 Score=64.70 Aligned_cols=217 Identities=14% Similarity=0.106 Sum_probs=117.5
Q ss_pred cccccHHHHHHHHHHhhcC------------CCCccHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCC---CHHHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTNA------------NGGIGKTTLAKEFAKQARED-KLFDRVVFSEVSQTS---DIKKIQGDIA 186 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~~------------~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~---~~~~~~~~i~ 186 (374)
+++||+.+++.|...+..- ..|||||+|++.|.....-+ +.|=...|-....+. .....+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3789999999999888643 77999999999998854322 222111111122221 2233334444
Q ss_pred HHh-------------------CcCCc-----------------------hhhHHH-----HHHHHHHHHhcCCeEEEEE
Q 045120 187 EKL-------------------GLELS-----------------------EEAEYR-----RASRLYERLKNENKILVIL 219 (374)
Q Consensus 187 ~~l-------------------~~~~~-----------------------~~~~~~-----~~~~l~~~L~~~kr~LlVl 219 (374)
.++ +.... +..... ....+......+++..+|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 433 11100 000001 1223333444557999999
Q ss_pred eCCCCcc-----ccccccCcCC-----CC---------CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCc
Q 045120 220 ANIWKLL-----DLETVKIPFR-----ND---------SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENC 280 (374)
Q Consensus 220 Ddv~~~~-----~~~~l~~~~~-----~~---------TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~ 280 (374)
||+.-.+ -++.+....+ .+ .+...+ .....+...+.|.||+..+...|.....+.....
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~-~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEI-LKSATNITTITLAPLSRADTNQLVAATLGCTKLL- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHH-hhcCCceeEEecCcCchhhHHHHHHHHhCCcccc-
Confidence 9995221 1111111111 11 121222 2233444689999999999999998888753322
Q ss_pred chHHHHHHHHHHccCCchHHHHHHhc---------CCCcccccccc----cccC-CCCcccchhh-cccCCchhhhhhh
Q 045120 281 KFKSTAINVAKACGAGLFCTLTTNAS---------KSSSIYSHVSN----DYQS-IYKPKPYLAV-FQDLEPTIVKTAF 344 (374)
Q Consensus 281 ~l~~~~~~I~~~c~~GlPLai~~ig~---------~~~~~~~W~~~----~~~~-~~~~~~~~~l-y~~Lp~~~lk~cf 344 (374)
..+..+.|.++- .|.|+-+.-+-. .+.+...|.-. .... .+.++.++.. -+.||+. .|...
T Consensus 239 -~~p~~~~i~~kt-~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~-t~~Vl 314 (849)
T COG3899 239 -PAPLLELIFEKT-KGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT-TREVL 314 (849)
T ss_pred -cchHHHHHHHHh-cCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH-HHHHH
Confidence 235677899999 999999876655 23455566221 1111 2221112333 8888775 55544
No 69
>PRK08727 hypothetical protein; Validated
Probab=97.13 E-value=0.0052 Score=55.09 Aligned_cols=129 Identities=11% Similarity=0.022 Sum_probs=70.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||+|++.+++...-. ...+.|+++.+ ....+. ...+.+. +.-+|||||
T Consensus 49 ~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~-----------------~~~~~l~--~~dlLiIDD 101 (233)
T PRK08727 49 PAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLR-----------------DALEALE--GRSLVALDG 101 (233)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHH-----------------HHHHHHh--cCCEEEEeC
Confidence 88999999999998865422 33556765432 111100 1112222 345888888
Q ss_pred CCCcc---cccc-ccCcCC----CC---------------CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCC
Q 045120 222 IWKLL---DLET-VKIPFR----ND---------------SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVE 278 (374)
Q Consensus 222 v~~~~---~~~~-l~~~~~----~~---------------TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~ 278 (374)
+.... .+.. +...+. .+ .....+. ..+.....+++++++.++-.+++.+.+.....
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~-SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR-SRLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred cccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH-HHHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 76321 1111 100000 00 2233332 24444568999999999999999987752211
Q ss_pred CcchHHHHHHHHHHccCCchHH
Q 045120 279 NCKFKSTAINVAKACGAGLFCT 300 (374)
Q Consensus 279 ~~~l~~~~~~I~~~c~~GlPLa 300 (374)
.- -.+...-|++.| +|-.-.
T Consensus 181 ~l-~~e~~~~La~~~-~rd~r~ 200 (233)
T PRK08727 181 AL-DEAAIDWLLTHG-ERELAG 200 (233)
T ss_pred CC-CHHHHHHHHHhC-CCCHHH
Confidence 11 135566788888 654433
No 70
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.01 Score=62.48 Aligned_cols=170 Identities=12% Similarity=0.016 Sum_probs=86.5
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...+||.+..++.|.+++..+ ..|+||||+|+.+.+.......... ..++.+...+.|...-.
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCCC
Confidence 456899999999999998875 7899999999999876532211100 00111111111111100
Q ss_pred c-------CC-chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccccCc---CCCC-------CcchhHhh
Q 045120 191 L-------EL-SEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETVKIP---FRND-------SRDNNVVL 246 (374)
Q Consensus 191 ~-------~~-~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~---~~~~-------TR~~~va~ 246 (374)
. .. .....++ +..+.+.+. .+++-++|||++.... ..+.|... .+.. |....+..
T Consensus 87 ~~~dv~eidaas~~~Vd~-iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDD-ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHH-HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0 00 0001111 111222211 1245578899887442 22222221 2222 33333322
Q ss_pred hhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHH
Q 045120 247 LSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCT 300 (374)
Q Consensus 247 ~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLa 300 (374)
........|++..++.++..+.+.+........ --......|++.+ +|.+..
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~s-gGdlR~ 217 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAG-GGSVRD 217 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHH
Confidence 122233578999999999888887765322111 1134456788889 887743
No 71
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.011 Score=60.44 Aligned_cols=179 Identities=16% Similarity=0.175 Sum_probs=91.4
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEE-eCCCCCHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSE-VSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~l 189 (374)
...++|-+..++.|.+.+..+ +.|+||||+|+.+.+..-....++.-.|.. +...++.....+.+...-
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 466899999999999988765 889999999999987653322111111110 011111122222221111
Q ss_pred CcCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccc----cCcCCCC------CcchhHhhh
Q 045120 190 GLEL------SEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETV----KIPFRND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l----~~~~~~~------TR~~~va~~ 247 (374)
..+. .....++. ..+.+.+. .+.+-++|+|++.... ..+.| ..+-+.. ++...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~I-r~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 95 SLNISEFDAASNNSVDDI-RQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCeEEecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 1100 00011221 22222221 1245688999987542 22222 2222222 333344322
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCc-hHHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGL-FCTLT 302 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~Gl-PLai~ 302 (374)
.......+++.+++.++....+.+.+...... --.+.+..|+..+ +|. -.|+.
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s-~Gdlr~al~ 227 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKA-QGSMRDAQS 227 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHh-CCCHHHHHH
Confidence 22334579999999999887777765421111 1135567889999 774 44444
No 72
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.01 Score=60.20 Aligned_cols=175 Identities=13% Similarity=0.138 Sum_probs=91.7
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
..+++|-+..++.|.+.+..+ +.|+||||+|+.+.+..-.....+ ...++.....+.|.....
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 456889888888888888765 889999999999987543211110 011122222222221111
Q ss_pred cCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cccccccCcC----CCC-----Ccc-hhHhhhh
Q 045120 191 LEL------SEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVKIPF----RND-----SRD-NNVVLLS 248 (374)
Q Consensus 191 ~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~----~~~-----TR~-~~va~~~ 248 (374)
... .....+ .++.+.+.+. .+++-+||+|++... ...+.|...+ +.. |.. ..+....
T Consensus 88 pDv~eId~a~~~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000 000111 1122222222 235679999999754 2233332222 111 322 2332111
Q ss_pred cCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCc-hHHHHHHh
Q 045120 249 MGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGL-FCTLTTNA 305 (374)
Q Consensus 249 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~Gl-PLai~~ig 305 (374)
......+++.+++.++....+...+..... .--.+....|++.+ +|. -.|+..+.
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s-~GdlR~Al~lLe 222 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRA-AGSVRDSMSLLG 222 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 112237899999999999888876642211 11135567888899 774 46776664
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.98 E-value=0.0038 Score=65.51 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=78.6
Q ss_pred ccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcC---CC-CeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDK---LF-DRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
.+++||+.++.++++.|... .+|+|||+||+.+.+...... .+ +..+|.. ++..+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~---- 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAG---- 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhh----
Confidence 46999999999999988754 889999999999988653211 11 3344421 22222110
Q ss_pred hCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------cccc-ccCcCCCC-------Ccchh-------
Q 045120 189 LGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL----------DLET-VKIPFRND-------SRDNN------- 243 (374)
Q Consensus 189 l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~----------~~~~-l~~~~~~~-------TR~~~------- 243 (374)
... ...-++....+.+.+...++.+|++|++.... +... +...+..+ |....
T Consensus 253 --~~~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~ 329 (731)
T TIGR02639 253 --TKY-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEK 329 (731)
T ss_pred --ccc-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhh
Confidence 000 01122334444444443357899999986221 1112 33333333 33211
Q ss_pred -HhhhhcCCCCceecCCCCHHHHHHHHHHhc
Q 045120 244 -VVLLSMGSKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 244 -va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
-|-.. --..+.+++++.++..+++....
T Consensus 330 d~al~r--Rf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 330 DRALSR--RFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hHHHHH--hCceEEeCCCCHHHHHHHHHHHH
Confidence 11111 12368999999999999999654
No 74
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.014 Score=56.13 Aligned_cols=166 Identities=12% Similarity=0.156 Sum_probs=86.6
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhc------CCCCeEE-EEEeCCCCCHHHHH
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQARED------KLFDRVV-FSEVSQTSDIKKIQ 182 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~------~~F~~~~-wv~vs~~~~~~~~~ 182 (374)
....++|.+..++.+.+.+..+ +.|+||||+|+.+.+..... ..|+..+ -++.....+... .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 3566899999999999998765 88999999999997754321 1122111 111111111111 1
Q ss_pred HHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccc----CcCCCC------CcchhHhhhhcC
Q 045120 183 GDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVK----IPFRND------SRDNNVVLLSMG 250 (374)
Q Consensus 183 ~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~----~~~~~~------TR~~~va~~~~~ 250 (374)
..+++.+... -..+ ++-++++|++.... .+..+. .+.+.. +....+......
T Consensus 94 ~~l~~~~~~~---------------p~~~-~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIP---------------PQTG-KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhc---------------cccC-CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 1222211100 0012 45679999886432 233321 111111 222222111122
Q ss_pred CCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH-HHHHH
Q 045120 251 SKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC-TLTTN 304 (374)
Q Consensus 251 ~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL-ai~~i 304 (374)
....+++.+++.++....+...+...... --.+....|+..+ +|-+- ++..+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~-~gdlr~~~~~l 210 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKA-DGALRDALSIF 210 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhC-CCCHHHHHHHH
Confidence 23478999999999888888766422211 1135666788888 77544 43333
No 75
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.97 E-value=0.0045 Score=65.80 Aligned_cols=139 Identities=16% Similarity=0.295 Sum_probs=76.7
Q ss_pred ccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcC---CC-CeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDK---LF-DRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
.+++||+.+++++++.|... .+|+|||++|..+........ .. +..+|. .+...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-----l~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-----LDIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-----eeHHHHhc-----
Confidence 46899999999999999754 899999999999988653211 11 234553 12222211
Q ss_pred hCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc---------ccccc-ccCcCCCC-------CcchhHhh-----
Q 045120 189 LGLELSEEAEYRRASRLYERLKNENKILVILANIWKL---------LDLET-VKIPFRND-------SRDNNVVL----- 246 (374)
Q Consensus 189 l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~---------~~~~~-l~~~~~~~-------TR~~~va~----- 246 (374)
+..... .-++....+.+.+...++.+|++|++... .+... |.+.+..+ |.......
T Consensus 249 -g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 249 -GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred -cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcC
Confidence 111111 22233344444444336899999998521 11222 22223333 33332210
Q ss_pred -hhcCCCCceecCCCCHHHHHHHHHHh
Q 045120 247 -LSMGSKDNFLIANITEEEAWRLFKIM 272 (374)
Q Consensus 247 -~~~~~~~~~~l~~L~~~~s~~Lf~~~ 272 (374)
.......++.+...+.++...++...
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 01112236788888888888887643
No 76
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.017 Score=58.51 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=87.0
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
..+++|.+..++.|.+++..+ +.|+||||+|+.+.+........+ ...++.......|...-+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence 457899999999999998875 889999999999987543211110 001111111111111000
Q ss_pred cC-------C-chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cccccccCc---CCCC-------CcchhHhh
Q 045120 191 LE-------L-SEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVKIP---FRND-------SRDNNVVL 246 (374)
Q Consensus 191 ~~-------~-~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~---~~~~-------TR~~~va~ 246 (374)
.. . .....++ ...+.+.+. .+++-++|+|++... ...+.|... .|.. |....+..
T Consensus 85 ~~~dvieidaas~~gvd~-iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDD-TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHH-HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 00 0 0001111 112222221 125568899998643 222222221 1222 33333322
Q ss_pred hhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH
Q 045120 247 LSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC 299 (374)
Q Consensus 247 ~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL 299 (374)
........+++.+++.++..+.+.+.+......- -......|++.+ +|.+-
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s-~GdlR 214 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAG-GGSPR 214 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHH
Confidence 1122235799999999998888877664221111 134556788888 88663
No 77
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.92 E-value=0.031 Score=48.22 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=31.4
Q ss_pred CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHH
Q 045120 253 DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCT 300 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLa 300 (374)
..+.+.+++.++..+.+.+. + . + .+.+..|+..+ +|.|..
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~-g--i-~---~~~~~~i~~~~-~g~~r~ 187 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ-G--I-S---EEAAELLLALA-GGSPGA 187 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc-C--C-C---HHHHHHHHHHc-CCCccc
Confidence 48999999999998888876 2 1 1 35677999999 998853
No 78
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.035 Score=56.90 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=87.4
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhh---------------------cCCCCeEEE
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQARE---------------------DKLFDRVVF 169 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~---------------------~~~F~~~~w 169 (374)
...++|-+..++.|.+++..+ ..|+||||+|+.+....-. ..+|+.. .
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-E 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-E
Confidence 456899999999999998776 7899999999888775421 1133322 1
Q ss_pred EEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ccccccCc---CCCC------
Q 045120 170 SEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVKIP---FRND------ 238 (374)
Q Consensus 170 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~---~~~~------ 238 (374)
+..+...+...+. .++.++.... ..+++-++|+|++.... ..+.|... .|..
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 2222111222211 1222211000 01245578899887542 23332221 2222
Q ss_pred -CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH
Q 045120 239 -SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC 299 (374)
Q Consensus 239 -TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL 299 (374)
|....+.........++++.+++.++....+.+.+......- -.+....|+..+ ||-+-
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s-~gdlr 217 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKA-DGGMR 217 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHH
Confidence 333333321222234799999999999988887664222111 124566888999 77554
No 79
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.87 E-value=0.011 Score=57.40 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=84.5
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
...+.|++..+++|.+.+..+ ++|+|||+||+.+++... .. |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----
Confidence 446889999999988866321 889999999999998543 22 232221
Q ss_pred HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------c----cccccC---cCCC--
Q 045120 179 KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL------------D----LETVKI---PFRN-- 237 (374)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~------------~----~~~l~~---~~~~-- 237 (374)
..+. ...- . ........+.+........+|+||++.... . +..+.. .+..
T Consensus 199 ~~l~----~~~~----g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELV----QKFI----G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHh----Hhhc----c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111 1110 0 111223334443333357899999987420 0 111111 1111
Q ss_pred C------CcchhHhhhh-c---CCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCc-hHHHHHHh
Q 045120 238 D------SRDNNVVLLS-M---GSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGL-FCTLTTNA 305 (374)
Q Consensus 238 ~------TR~~~va~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~Gl-PLai~~ig 305 (374)
+ |......... . .-...+.+++.+.++-.++|+.+........... ...+++.+ .|+ +--|..+.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~--~~~la~~t-~g~sgadl~~l~ 345 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD--LEELAELT-EGASGADLKAIC 345 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC--HHHHHHHc-CCCCHHHHHHHH
Confidence 1 2222111101 1 1134689999999999999998876332222111 23566666 553 34444433
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.054 Score=53.94 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=86.2
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcC-------------------CCCeEEEEE
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDK-------------------LFDRVVFSE 171 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~ 171 (374)
...++|-+..+..+.+++..+ +.|+||||+|+.+....-... .|...+.+.
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 456889999999999998765 889999999999877432100 011112221
Q ss_pred eCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccc----cccCcCCCC---
Q 045120 172 VSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLE----TVKIPFRND--- 238 (374)
Q Consensus 172 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~----~l~~~~~~~--- 238 (374)
.+..... + ..+.+.+.+. .+++-++|+|++.... ..+ .+..+.+..
T Consensus 95 aas~~gv--------------------d-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 95 AASNRGI--------------------D-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred CccCCCH--------------------H-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1111111 1 1112222222 1356799999987432 222 222222222
Q ss_pred ---CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 239 ---SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 239 ---TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
|+...+..........+.+.+++.++-...+...+...... --.+....|+..+ +|.+-.+
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s-~G~lr~a 217 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQAS-EGGMRDA 217 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHH
Confidence 33333321111222478899999999888888766422111 1134556788888 7866544
No 81
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.014 Score=57.59 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=85.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||+|++.+.+.......--.+++++ ..++...+...++... .....+.+.+.. .-+|||||
T Consensus 149 ~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~~--~dvLiIDD 214 (450)
T PRK14087 149 ESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEICQ--NDVLIIDD 214 (450)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhcc--CCEEEEec
Confidence 779999999999998554222112344543 3456666666664210 122334444443 45899999
Q ss_pred CCCcc---cc-ccccC---cC-CCC-----C--c--------chhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCC
Q 045120 222 IWKLL---DL-ETVKI---PF-RND-----S--R--------DNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVE 278 (374)
Q Consensus 222 v~~~~---~~-~~l~~---~~-~~~-----T--R--------~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~ 278 (374)
+.... .+ +.+.. .+ ..+ | + ...+. ..+...-++.+++++.++-.+++.+.+.....
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~-SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl 293 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI-TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI 293 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH-HHHhCCceeccCCcCHHHHHHHHHHHHHhcCC
Confidence 96431 11 11111 10 111 1 1 12222 24445568899999999999999998853211
Q ss_pred -CcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 279 -NCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 279 -~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
..--.++..-|+..+ +|.|-.+.-+-
T Consensus 294 ~~~l~~evl~~Ia~~~-~gd~R~L~gaL 320 (450)
T PRK14087 294 KQEVTEEAINFISNYY-SDDVRKIKGSV 320 (450)
T ss_pred CCCCCHHHHHHHHHcc-CCCHHHHHHHH
Confidence 112246777899999 88887765444
No 82
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.77 E-value=0.005 Score=61.19 Aligned_cols=147 Identities=17% Similarity=0.203 Sum_probs=77.3
Q ss_pred cccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcC---CCCeEEEEEeC
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDK---LFDRVVFSEVS 173 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs 173 (374)
.....+.|.+..+++|.+.+..+ ++|+|||++|+.+++...... .+....|+++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 34456888999999988876421 889999999999999654221 12234555544
Q ss_pred CCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------c-----cccccCcC---C
Q 045120 174 QTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL---------D-----LETVKIPF---R 236 (374)
Q Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~---------~-----~~~l~~~~---~ 236 (374)
.. .+ +...... ............++....+++++|+||++.... + +..+...+ .
T Consensus 259 ~~----eL----l~kyvGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 259 GP----EL----LNKYVGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ch----hh----cccccch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 32 11 1111000 000011112222222223368999999997420 1 11121111 1
Q ss_pred C--C------CcchhHhhhh-c--C-CCCceecCCCCHHHHHHHHHHhcC
Q 045120 237 N--D------SRDNNVVLLS-M--G-SKDNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 237 ~--~------TR~~~va~~~-~--~-~~~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
. + |......... . + -...+.++..+.++..++|..+..
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 1 1 2222211101 1 1 123689999999999999999875
No 83
>PRK09087 hypothetical protein; Validated
Probab=96.74 E-value=0.0052 Score=54.81 Aligned_cols=53 Identities=4% Similarity=-0.108 Sum_probs=37.3
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLT 302 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~ 302 (374)
.+....++++++++.++-.+++.+.+...... --+++..-|++.+ .|..-++.
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~-l~~ev~~~La~~~-~r~~~~l~ 193 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQLY-VDPHVVYYLVSRM-ERSLFAAQ 193 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHh-hhhHHHHH
Confidence 44555689999999999999999988532111 1145667788888 66666554
No 84
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.71 E-value=0.012 Score=55.82 Aligned_cols=92 Identities=9% Similarity=0.160 Sum_probs=59.6
Q ss_pred HHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCe-EEEEEeCCC-CCHHHHHHHHHHHhCcCCchhhHH
Q 045120 132 KSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDR-VVFSEVSQT-SDIKKIQGDIAEKLGLELSEEAEY 199 (374)
Q Consensus 132 ~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~ 199 (374)
.++++.+..- ..|+|||||++.+.+..... +-+. ++|+.+.+. .++.++++.+...+..+..+.+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 4467766532 78999999999998865432 3344 367777766 468888888888776554322111
Q ss_pred ------HHHHHHHHHH-hcCCeEEEEEeCCCC
Q 045120 200 ------RRASRLYERL-KNENKILVILANIWK 224 (374)
Q Consensus 200 ------~~~~~l~~~L-~~~kr~LlVlDdv~~ 224 (374)
.....+.+++ ..+++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1222333333 346999999999853
No 85
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.67 E-value=0.006 Score=48.88 Aligned_cols=82 Identities=21% Similarity=0.113 Sum_probs=43.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
+.|+||||+|+.+.+..... ...+++++.+........... ...................+.+.....+..+|++|+
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe 86 (148)
T smart00382 10 PPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86 (148)
T ss_pred CCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 78999999999998855422 123566655544322222111 111111111122233334555555542349999999
Q ss_pred CCCcc
Q 045120 222 IWKLL 226 (374)
Q Consensus 222 v~~~~ 226 (374)
+....
T Consensus 87 i~~~~ 91 (148)
T smart00382 87 ITSLL 91 (148)
T ss_pred CcccC
Confidence 98653
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.63 E-value=0.079 Score=53.78 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=88.3
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|.+..++.+.+++..+ +.|+||||+|+.+....-....-+ +..++.......|....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 3567999999999999998765 889999999999876432111000 11122222222222111
Q ss_pred CcCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccccccc----CcCCCC------CcchhHhhh
Q 045120 190 GLEL------SEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVK----IPFRND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~----~~~~~~------TR~~~va~~ 247 (374)
.... ..... +....+.+... .+++-++|+|++... ..+..|. .+.+.. |....+...
T Consensus 87 ~~dv~eidaas~~~v-d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 87 LMDVIEIDAASNNGV-DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCeEEeeccccCCH-HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 1100 00111 11222223222 235678899998743 2233322 221111 333322211
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCT 300 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLa 300 (374)
.......+.+.+++.++....+...+......-+ .+....|++.+ +|-+..
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s-~G~~R~ 216 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAA-EGGMRD 216 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHc-CCCHHH
Confidence 1122246888999999988888877642221111 34566788888 666543
No 87
>PRK08118 topology modulation protein; Reviewed
Probab=96.63 E-value=0.00089 Score=56.79 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=22.8
Q ss_pred CCCccHHHHHHHHHHHhhhc-CCCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQARED-KLFDRVVF 169 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 169 (374)
++|+||||||+.+++..... -+||..+|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 78999999999999976544 45777775
No 88
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.63 E-value=0.0061 Score=54.50 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=22.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV 172 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 172 (374)
..|+|||||+..+..+.. +.|+.++.++-
T Consensus 21 ~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 21 KSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred CCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 789999999999987644 67877766643
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.043 Score=56.73 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=88.7
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|-+..++.|.+++..+ +.|+||||+|+.+....-.....+ ...+....... .
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~---------~~~pC~~C~~~---~ 83 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD---------LLEPCQECIEN---V 83 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC---------CCCchhHHHHh---h
Confidence 3556899999999999998775 889999999999877432111000 00000000000 0
Q ss_pred CcCC--------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--ccccccc----CcCCCC------CcchhHh
Q 045120 190 GLEL--------SEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVK----IPFRND------SRDNNVV 245 (374)
Q Consensus 190 ~~~~--------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~----~~~~~~------TR~~~va 245 (374)
+... .....+ ..+.+.+.+. .+++-++|+|++... ..+..|. .|-+.. |....+.
T Consensus 84 ~~~~Dvieidaasn~~vd-~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVD-EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred cCCCcEEEEeccccCCHH-HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0000 000111 1222333332 135668999998643 2233322 222221 3333443
Q ss_pred hhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCch-HHHHHH
Q 045120 246 LLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLF-CTLTTN 304 (374)
Q Consensus 246 ~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlP-Lai~~i 304 (374)
.........+++.+++.++....+...+......- -.+.+..|++.+ +|.+ .|+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS-~GslR~AlslL 220 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLS-SGSLRDALSIA 220 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHHHHHH
Confidence 21222234899999999999888887653211111 134566888999 7765 444443
No 90
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.57 E-value=0.035 Score=50.51 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=52.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC----CeEEEEEeCCCCCHHHHHHHHHHHhCcCCch-------------hhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF----DRVVFSEVSQTSDIKKIQGDIAEKLGLELSE-------------EAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~ 204 (374)
.+|+|||.|+.+++-+....... ..++|++-...|+..++. +|++..+..... .........
T Consensus 46 ~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~ 124 (256)
T PF08423_consen 46 ESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEELLELLEQ 124 (256)
T ss_dssp STTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHH
T ss_pred ecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHHHHHHHHH
Confidence 89999999999887654432211 358999999999988875 466665533111 122233445
Q ss_pred HHHHHhcCCeEEEEEeCCC
Q 045120 205 LYERLKNENKILVILANIW 223 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~ 223 (374)
+...+.+.+=-|||+|.+-
T Consensus 125 l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 125 LPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHSCEEEEEEETSS
T ss_pred HHhhccccceEEEEecchH
Confidence 5555555466799999875
No 91
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.57 E-value=0.027 Score=52.80 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=33.7
Q ss_pred cccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHh
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~ 158 (374)
.....++|.+...+.+..++..+ +.|+||||+|+.+++..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 34567899999999999988765 78999999999998854
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.56 E-value=0.12 Score=46.41 Aligned_cols=51 Identities=8% Similarity=-0.039 Sum_probs=34.4
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCT 300 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLa 300 (374)
.+....+++++++++++-.+++.+.+..... .--+++..-|++.| .|-.-+
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~-~l~~~v~~~L~~~~-~~d~r~ 205 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRGF-ELPEDVGRFLLKRL-DREMRT 205 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhh-cCCHHH
Confidence 4555668999999999999999886643211 11145667788888 554433
No 93
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.059 Score=54.61 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=88.2
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|-+..++.|.+++..+ +.|+||||+|+.+.+..-....... ..++.....+.|...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcCC
Confidence 3457899999999999999776 8899999999999875432111100 0000001111111110
Q ss_pred CcC------CchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccccCcC---CCC-------CcchhHhhh
Q 045120 190 GLE------LSEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETVKIPF---RND-------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~------~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~~~---~~~-------TR~~~va~~ 247 (374)
... ......++. ..+.+.+. .+++-++|+|++.... .++.|...+ |.. |....+...
T Consensus 87 ~~dv~~idgas~~~vddI-r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDV-RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCeEEecCcccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 000 000111111 12221111 1256689999987542 233332222 122 333333221
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
.......+++.+++.++-...+...+...... --.+....|++.+ +|.+-.+
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s-~GdlR~a 217 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKS-TGSVRDA 217 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHH
Confidence 12223368899999999888888776422211 1135566788888 8877533
No 94
>PRK08181 transposase; Validated
Probab=96.53 E-value=0.077 Score=48.56 Aligned_cols=64 Identities=22% Similarity=0.166 Sum_probs=36.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||.||..+.+...- ..-.++|+++ .+++..+..... ..+. ..+.+.+. +-=||||||
T Consensus 114 p~GtGKTHLa~Aia~~a~~--~g~~v~f~~~------~~L~~~l~~a~~----~~~~----~~~l~~l~--~~dLLIIDD 175 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALIE--NGWRVLFTRT------TDLVQKLQVARR----ELQL----ESAIAKLD--KFDLLILDD 175 (269)
T ss_pred cCCCcHHHHHHHHHHHHHH--cCCceeeeeH------HHHHHHHHHHHh----CCcH----HHHHHHHh--cCCEEEEec
Confidence 8899999999999886532 2234566643 445554433211 1111 12233333 346999999
Q ss_pred CC
Q 045120 222 IW 223 (374)
Q Consensus 222 v~ 223 (374)
+-
T Consensus 176 lg 177 (269)
T PRK08181 176 LA 177 (269)
T ss_pred cc
Confidence 85
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.11 Score=52.11 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=85.9
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCC-------------------eEEEEE
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFD-------------------RVVFSE 171 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~-------------------~~~wv~ 171 (374)
...++|-+..++.+...+..+ ..|+||||+|+.+.+..-....-+ .++.+.
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 456899999999999988766 779999999998877532111000 111221
Q ss_pred eCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccc----ccCcCCCC------C
Q 045120 172 VSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLET----VKIPFRND------S 239 (374)
Q Consensus 172 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~----l~~~~~~~------T 239 (374)
.+....+..+. +++.... ..-..+++-++|+|++.... ..+. +..+ |.. |
T Consensus 93 aas~~gId~IR-elie~~~----------------~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL~t 154 (535)
T PRK08451 93 AASNRGIDDIR-ELIEQTK----------------YKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFILAT 154 (535)
T ss_pred cccccCHHHHH-HHHHHHh----------------hCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEEEE
Confidence 11111111111 1111110 00001245688899886432 1222 2222 222 2
Q ss_pred cc-hhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHH
Q 045120 240 RD-NNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTT 303 (374)
Q Consensus 240 R~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ 303 (374)
.+ ..+..........+++.+++.++....+.+.+...... --.+....|++.+ +|.+--+..
T Consensus 155 td~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s-~GdlR~aln 217 (535)
T PRK08451 155 TDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSG-NGSLRDTLT 217 (535)
T ss_pred CChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCcHHHHHH
Confidence 22 22211111123478999999999988887766422211 1135667899999 888854433
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.45 E-value=0.013 Score=62.32 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=33.0
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
..+++||+.++.++++.|+.. .+|+|||+||..+....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 356999999999999988764 88999999999998864
No 97
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.44 E-value=0.023 Score=52.59 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=18.6
Q ss_pred CceecCCCCHHHHHHHHHHhcC
Q 045120 253 DNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
..+++++++.+|-.+++...+.
T Consensus 188 ~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 188 HHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred cEEEeCCcCHHHHHHHHHHHHH
Confidence 4688999999999999888764
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.07 Score=54.41 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=87.5
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|-+..++.|.+.+..+ ..|+||||+|+.+.+..-.....+ ...++.......|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 3567999999999999998775 889999999999887532211110 00111111111111100
Q ss_pred CcCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--cccc----ccCcCCCC------CcchhHhhh
Q 045120 190 GLEL------SEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLET----VKIPFRND------SRDNNVVLL 247 (374)
Q Consensus 190 ~~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~----l~~~~~~~------TR~~~va~~ 247 (374)
.... .....+ .+..+.+.+. .+++-++|+|++.... ..+. +..+.+.. |....+...
T Consensus 87 ~~d~~eid~~s~~~v~-~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 87 SVDVFEIDGASNTGVD-DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCeeeeeccCccCHH-HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 000011 1222223222 1245578899986432 2222 22222222 333334321
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCch-HHHHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLF-CTLTTN 304 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlP-Lai~~i 304 (374)
.......+++.+++.++....+...+......- -.+....|++.+ +|.. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a-~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKG-DGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHc-CCCHHHHHHHH
Confidence 222234688889999888877776654221111 134456788888 6644 455444
No 99
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.086 Score=52.08 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=32.5
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~ 158 (374)
...++|.+..++.+.+++..+ ..|+||||+|+.+.+..
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456899999999999998765 88999999999987754
No 100
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.38 E-value=0.025 Score=50.59 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCcCC-------------chhhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKL----FDRVVFSEVSQTSDIKKIQGDIAEKLGLEL-------------SEEAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------------~~~~~~~~~~~ 204 (374)
.+|+|||+||.++.-....... -..++|++....++...+. ++++.++... ...........
T Consensus 27 ~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~ 105 (235)
T cd01123 27 EFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEE 105 (235)
T ss_pred CCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHHHHHHHHHH
Confidence 8899999999998754332221 2578999988877765543 3344433211 11122234456
Q ss_pred HHHHHhcC-CeEEEEEeCCCC
Q 045120 205 LYERLKNE-NKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~~-kr~LlVlDdv~~ 224 (374)
+.+.+... +--|||+|.+..
T Consensus 106 l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 106 LEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHhhcCCeeEEEEeCcHH
Confidence 66666664 678999998853
No 101
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.35 E-value=0.089 Score=51.04 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=31.4
Q ss_pred cccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhh
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~ 159 (374)
.....+.|.+..+++|.+.+..+ +.|+|||+||+.+.+...
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 33456889998888887766421 889999999999998543
No 102
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.14 Score=52.63 Aligned_cols=173 Identities=15% Similarity=0.112 Sum_probs=89.0
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|.+..+..|.+++..+ ..|+||||+|+.+.+..-....... ....+......+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence 456889999999999888765 7899999999999886532211100 0112222333333332222
Q ss_pred cCC------chhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccccC----cCCCC-----C-cchhHhhhh
Q 045120 191 LEL------SEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETVKI----PFRND-----S-RDNNVVLLS 248 (374)
Q Consensus 191 ~~~------~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~----~~~~~-----T-R~~~va~~~ 248 (374)
... .....+ .++.+.+.+. .+++-++|+|++.... ..+.|.. +.+.. | ....+....
T Consensus 90 ~D~~ei~~~~~~~vd-~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVD-NIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHH-HHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 110 001111 1122222222 1245688999987542 2333222 11111 2 222222111
Q ss_pred cCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 249 MGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 249 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
......+.+..++.++....+.+.+......- -.+....|++.+ +|.+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s-~G~lr~A 219 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRS-QGGLRDA 219 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHc-CCCHHHH
Confidence 12224678889999988887777664321111 124567888999 7766543
No 103
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.32 E-value=0.024 Score=51.75 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=50.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF-DRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLY 206 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~ 206 (374)
..|+|||||++.++++.+. +| +.++++-++... ...++.+++...=... ..+++.. ...-.+.
T Consensus 77 ~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~A 154 (274)
T cd01133 77 GAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMA 154 (274)
T ss_pred CCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 7799999999999997663 35 556777777765 3455655555421111 1111111 1233566
Q ss_pred HHHh-c-CCeEEEEEeCCCC
Q 045120 207 ERLK-N-ENKILVILANIWK 224 (374)
Q Consensus 207 ~~L~-~-~kr~LlVlDdv~~ 224 (374)
++++ . ++..||++||+..
T Consensus 155 Eyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 155 EYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHhcCCeEEEEEeChhH
Confidence 6664 2 4899999999854
No 104
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.32 E-value=0.0093 Score=47.77 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=16.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.+...
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 689999999999999753
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.31 E-value=0.015 Score=51.61 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=69.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||.|.+++++.......=..+++++ ..++...+...+... ....+++.+.. -=+|+|||
T Consensus 42 ~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~~--~DlL~iDD 105 (219)
T PF00308_consen 42 PSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLRS--ADLLIIDD 105 (219)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHCT--SSEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhhc--CCEEEEec
Confidence 789999999999999765322112355654 344444444444221 11223333332 34566666
Q ss_pred CCCccc---ccc-cc---C--------------cCCCC--CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCC
Q 045120 222 IWKLLD---LET-VK---I--------------PFRND--SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVE 278 (374)
Q Consensus 222 v~~~~~---~~~-l~---~--------------~~~~~--TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~ 278 (374)
+..... |.. +. . ..|.. .-...+. ..+...-++++++++.++-.+++.+.+.....
T Consensus 106 i~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~-SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 106 IQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR-SRLSWGLVVELQPPDDEDRRRILQKKAKERGI 184 (219)
T ss_dssp GGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH-HHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred chhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh-hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 643211 111 00 0 00111 2223332 24555568999999999999999998862221
Q ss_pred CcchHHHHHHHHHHccCCchHHH
Q 045120 279 NCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 279 ~~~l~~~~~~I~~~c~~GlPLai 301 (374)
. --.++..-|++.+ .+..-.+
T Consensus 185 ~-l~~~v~~~l~~~~-~~~~r~L 205 (219)
T PF00308_consen 185 E-LPEEVIEYLARRF-RRDVREL 205 (219)
T ss_dssp --S-HHHHHHHHHHT-TSSHHHH
T ss_pred C-CcHHHHHHHHHhh-cCCHHHH
Confidence 1 1135666777777 5544433
No 106
>CHL00181 cbbX CbbX; Provisional
Probab=96.31 E-value=0.073 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=17.6
Q ss_pred CceecCCCCHHHHHHHHHHhcC
Q 045120 253 DNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
..+.+++++.++..+++...+.
T Consensus 189 ~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 189 NHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred ceEEcCCcCHHHHHHHHHHHHH
Confidence 3688888888888888887764
No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.29 E-value=0.016 Score=60.60 Aligned_cols=137 Identities=17% Similarity=0.275 Sum_probs=77.0
Q ss_pred ccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcC-C---CCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDK-L---FDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
.+++||+.++.++++.|... ..|+|||+||+.+........ . .++.+|.. ++..++ .
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll----a- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL----A- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh----c-
Confidence 46999999999999988764 889999999999987542111 1 24445421 222111 0
Q ss_pred hCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc----------ccccc-ccCcCCCC-------CcchhH------
Q 045120 189 LGLELSEEAEYRRASRLYERLKNENKILVILANIWKL----------LDLET-VKIPFRND-------SRDNNV------ 244 (374)
Q Consensus 189 l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~----------~~~~~-l~~~~~~~-------TR~~~v------ 244 (374)
+.... ..-+.....+.+.+...+..+|++|++... .+... +...+..+ |.....
T Consensus 256 -G~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 256 -GTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred -ccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhc
Confidence 11111 122233344444444335789999998632 11222 22222222 322221
Q ss_pred --h-hhhcCCCCceecCCCCHHHHHHHHHHhc
Q 045120 245 --V-LLSMGSKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 245 --a-~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
+ ...+ ..+.+++.+.++..+++....
T Consensus 334 D~AL~rRF---q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 334 DRALARRF---QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred cHHHHhhC---cEEEeCCCCHHHHHHHHHHHH
Confidence 1 1122 368999999999999988653
No 108
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.27 E-value=0.056 Score=48.26 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=32.7
Q ss_pred ccccccccccHHHHHHHHHHh---hcC----------CCCccHHHHHHHHHHHhhhc
Q 045120 118 NKVYEAFESRVSNLKSTQNAL---TNA----------NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L---~~~----------~gGiGKTtLA~~v~~~~~~~ 161 (374)
+.....++|.|..++.|++-. ..+ ..|+|||+|++.+.+...-+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 344567999999988876533 222 88999999999999866543
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.26 E-value=0.03 Score=49.82 Aligned_cols=52 Identities=4% Similarity=-0.075 Sum_probs=34.9
Q ss_pred CCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 252 KDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 252 ~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
...+.+++|++++-..++.+.+...... --.+....+++.+ .|.|..+..+-
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~-l~~~al~~L~~~~-~gn~~~l~~~l 200 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQ-LADEVPDYLLTHF-RRDMPSLMALL 200 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhc-cCCHHHHHHHH
Confidence 3588999999988777777654321111 1135666788888 99988876554
No 110
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.21 E-value=0.032 Score=48.92 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=47.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh----CcC------CchhhHHHHHHHHHHHHhc
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL----GLE------LSEEAEYRRASRLYERLKN 211 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l----~~~------~~~~~~~~~~~~l~~~L~~ 211 (374)
.+|+|||+||.++..+.. ..-..++|++... ++...+.+. ++.. ... ............+.+.+..
T Consensus 20 ~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 95 (209)
T TIGR02237 20 PPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFIDR 95 (209)
T ss_pred CCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHHhh
Confidence 889999999999877543 2346789998875 666555443 2221 011 0111222335556666654
Q ss_pred CCeEEEEEeCCC
Q 045120 212 ENKILVILANIW 223 (374)
Q Consensus 212 ~kr~LlVlDdv~ 223 (374)
.+.-+||+|.+.
T Consensus 96 ~~~~lvVIDSis 107 (209)
T TIGR02237 96 DSASLVVVDSFT 107 (209)
T ss_pred cCccEEEEeCcH
Confidence 356689999874
No 111
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.03 Score=59.79 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=32.5
Q ss_pred ccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
.+++||+.++.+++..|... .+|+|||+||..+....
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46999999999999988764 88999999999988864
No 112
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.13 Score=51.18 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=38.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH--HHHHHHHHHHhCcCCchh-hHHHHHHHHHHHHhcCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI--KKIQGDIAEKLGLELSEE-AEYRRASRLYERLKNENKILVI 218 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~L~~~kr~LlV 218 (374)
.+|+||||++..+......+.....+..++.. .+.. ..-+......++...... +...+...+ +.+. ..-+|+
T Consensus 358 PtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL-~~l~--~~DLVL 433 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL-ERLR--DYKLVL 433 (559)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHH-HHhc--cCCEEE
Confidence 78999999998887754432222345555432 2222 222333333444332221 222233333 3333 356888
Q ss_pred EeCCC
Q 045120 219 LANIW 223 (374)
Q Consensus 219 lDdv~ 223 (374)
+|..-
T Consensus 434 IDTaG 438 (559)
T PRK12727 434 IDTAG 438 (559)
T ss_pred ecCCC
Confidence 88763
No 113
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.06 E-value=0.013 Score=53.49 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=18.0
Q ss_pred CceecCCCCHHHHHHHHHHhcC
Q 045120 253 DNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
..+.+++++.++-.+++.+.+.
T Consensus 171 ~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 171 ISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred eEEEECCCCHHHHHHHHHHHHH
Confidence 3578889999999999887775
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.98 E-value=0.049 Score=53.66 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFD-RVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILA 220 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlD 220 (374)
..|+|||+|++.+.+.... .+.+ .++|++. .++...+...+... + ...+.+.+.. +.-+|+||
T Consensus 138 ~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~----~----~~~f~~~~~~-~~dvLlID 201 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYRK-KVDVLLID 201 (440)
T ss_pred CCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc----c----HHHHHHHHHh-cCCEEEEe
Confidence 8899999999999997542 2233 4566653 44555665555321 1 1233334433 45689999
Q ss_pred CCCCcc---cc-ccccCc----CCCC------C-cch----hHh---hhhcCCCCceecCCCCHHHHHHHHHHhcCCCCC
Q 045120 221 NIWKLL---DL-ETVKIP----FRND------S-RDN----NVV---LLSMGSKDNFLIANITEEEAWRLFKIMNGDDVE 278 (374)
Q Consensus 221 dv~~~~---~~-~~l~~~----~~~~------T-R~~----~va---~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~ 278 (374)
|+.... .. +.+... ...+ | +.. .+. ...+....++.+++.+.+.-..++.+.+.....
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~ 281 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG 281 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC
Confidence 997421 01 111110 0111 1 111 110 112334457899999999999999988752211
Q ss_pred CcchHHHHHHHHHHccCCc
Q 045120 279 NCKFKSTAINVAKACGAGL 297 (374)
Q Consensus 279 ~~~l~~~~~~I~~~c~~Gl 297 (374)
.- -.++..-|++.+ .|.
T Consensus 282 ~l-~~ev~~~Ia~~~-~~~ 298 (440)
T PRK14088 282 EL-PEEVLNFVAENV-DDN 298 (440)
T ss_pred CC-CHHHHHHHHhcc-ccC
Confidence 10 134566677766 553
No 115
>PRK08116 hypothetical protein; Validated
Probab=95.92 E-value=0.042 Score=50.38 Aligned_cols=67 Identities=25% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||.||.++++..... -..+++++ ..+++..|...+..... .+ ...+.+.+.+ -=||||||
T Consensus 122 ~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-~~----~~~~~~~l~~--~dlLviDD 186 (268)
T PRK08116 122 SVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-ED----ENEIIRSLVN--ADLLILDD 186 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-cc----HHHHHHHhcC--CCEEEEec
Confidence 78999999999999976533 23456664 34455555555432211 11 1233444444 23899999
Q ss_pred CC
Q 045120 222 IW 223 (374)
Q Consensus 222 v~ 223 (374)
+-
T Consensus 187 lg 188 (268)
T PRK08116 187 LG 188 (268)
T ss_pred cc
Confidence 94
No 116
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.012 Score=57.50 Aligned_cols=125 Identities=20% Similarity=0.253 Sum_probs=74.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHH----HHhcCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYE----RLKNENKILV 217 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~----~L~~~kr~Ll 217 (374)
++|+|||+||..+... ..|+.+--++-..-.. .++......+.+ ..+. .--.|
T Consensus 546 p~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG------------------~sEsaKc~~i~k~F~DAYkS-~lsii 602 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALS----SDFPFVKIISPEDMIG------------------LSESAKCAHIKKIFEDAYKS-PLSII 602 (744)
T ss_pred CCCCChHHHHHHHHhh----cCCCeEEEeChHHccC------------------ccHHHHHHHHHHHHHHhhcC-cceEE
Confidence 8899999999999863 4477654443211111 122222233333 3334 56789
Q ss_pred EEeCCCCccccccccCcCCCC------------------------CcchhHhhhhcCC----CCceecCCCCH-HHHHHH
Q 045120 218 ILANIWKLLDLETVKIPFRND------------------------SRDNNVVLLSMGS----KDNFLIANITE-EEAWRL 268 (374)
Q Consensus 218 VlDdv~~~~~~~~l~~~~~~~------------------------TR~~~va~~~~~~----~~~~~l~~L~~-~~s~~L 268 (374)
|+||+...-+|-.+++.+.+. |....+.. .|+- ...|+++.|+. ++..+.
T Consensus 603 vvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~~~~~v 681 (744)
T KOG0741|consen 603 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGEQLLEV 681 (744)
T ss_pred EEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchHHHHHH
Confidence 999999888888887765443 44455542 3332 24788888887 777777
Q ss_pred HHHhc-CCCCCCcchHHHHHHHHHHc
Q 045120 269 FKIMN-GDDVENCKFKSTAINVAKAC 293 (374)
Q Consensus 269 f~~~a-~~~~~~~~l~~~~~~I~~~c 293 (374)
++..- |. +.+...++++...+|
T Consensus 682 l~~~n~fs---d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 682 LEELNIFS---DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHccCCC---cchhHHHHHHHhccc
Confidence 77654 32 233345555555554
No 117
>PHA00729 NTP-binding motif containing protein
Probab=95.86 E-value=0.049 Score=48.25 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=18.5
Q ss_pred CCceecCCCCHHHHHHHHHHhcC
Q 045120 252 KDNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 252 ~~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
...+.+.++++++..+++.....
T Consensus 119 ~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 119 VSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred CcEEEEecCCHHHHHHHHHhCCC
Confidence 34688999999999999987553
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.79 E-value=0.088 Score=51.32 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=75.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||+|++.+++.......=-.++|++ ..++...+...+... ....+.+.+.+ .-+|||||
T Consensus 144 ~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~dlLiiDD 207 (405)
T TIGR00362 144 GVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEEFKEKYRS--VDLLLIDD 207 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHHHHHHHHh--CCEEEEeh
Confidence 889999999999999765321112345654 334444555544321 12233444443 34888999
Q ss_pred CCCccc---c-ccccC---cC-CCC-------Ccc--------hhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCC
Q 045120 222 IWKLLD---L-ETVKI---PF-RND-------SRD--------NNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVE 278 (374)
Q Consensus 222 v~~~~~---~-~~l~~---~~-~~~-------TR~--------~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~ 278 (374)
+..... + +.+.. .+ ..+ ++. ..+ ...+.....+.+++.+.++-..++.+.+.....
T Consensus 208 i~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l-~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~ 286 (405)
T TIGR00362 208 IQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERL-RSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL 286 (405)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhh-hhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 974311 1 11110 00 111 111 111 123333457899999999999999998863221
Q ss_pred CcchHHHHHHHHHHccCCchH
Q 045120 279 NCKFKSTAINVAKACGAGLFC 299 (374)
Q Consensus 279 ~~~l~~~~~~I~~~c~~GlPL 299 (374)
.- -.++..-|++.+ .|.+-
T Consensus 287 ~l-~~e~l~~ia~~~-~~~~r 305 (405)
T TIGR00362 287 EL-PDEVLEFIAKNI-RSNVR 305 (405)
T ss_pred CC-CHHHHHHHHHhc-CCCHH
Confidence 11 135666778888 66544
No 119
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.062 Score=48.82 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=41.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||.||.++.+... +..+ .+.|++ ..++.+++...... .....+|.+.+. +-=||||||
T Consensus 113 ~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~~l~~~l~--~~dlLIiDD 175 (254)
T COG1484 113 PPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEEKLLRELK--KVDLLIIDD 175 (254)
T ss_pred CCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHHHHHHHhh--cCCEEEEec
Confidence 889999999999999876 4333 345553 45566666555532 112234444343 346999999
Q ss_pred CCC
Q 045120 222 IWK 224 (374)
Q Consensus 222 v~~ 224 (374)
+--
T Consensus 176 lG~ 178 (254)
T COG1484 176 IGY 178 (254)
T ss_pred ccC
Confidence 854
No 120
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.76 E-value=0.075 Score=49.79 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=51.8
Q ss_pred CCCccHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch----------hhHH---HHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDK----LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE----------EAEY---RRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~~---~~~~~ 204 (374)
..|+|||+|+.+++-...... .=..++||+....|++.++.+ +++.++..... .+.+ +....
T Consensus 104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~ 182 (313)
T TIGR02238 104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSEHQMELLDY 182 (313)
T ss_pred CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHHHHHHHHHH
Confidence 889999999988764332211 114689999999899888754 56766543211 1222 23344
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 045120 205 LYERLKNENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~~ 224 (374)
+...+..++--|||+|.+..
T Consensus 183 l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 183 LAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHhhccCCCEEEEEcchH
Confidence 45455543566899998753
No 121
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.72 E-value=0.11 Score=51.70 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=91.7
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
..+++|-+.-+..|.+.+..+ +-|+||||+|+-+..-.-..+ + .....++.....+.|...-.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 456899999999999998876 779999999998877432211 1 11223333333344433311
Q ss_pred cCCchh-----hHHHHHHHHHHHHh----cCCeEEEEEeCCCC--ccccccc----cCcCCCC-----Ccc-hhHhhhhc
Q 045120 191 LELSEE-----AEYRRASRLYERLK----NENKILVILANIWK--LLDLETV----KIPFRND-----SRD-NNVVLLSM 249 (374)
Q Consensus 191 ~~~~~~-----~~~~~~~~l~~~L~----~~kr~LlVlDdv~~--~~~~~~l----~~~~~~~-----TR~-~~va~~~~ 249 (374)
...-+. +.-+-.+.|.+... .++-=..|+|.|.- ...|..+ ..|.+.- |++ ..+.....
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 111010 11122333444433 23445788999863 3334443 3333332 333 33433333
Q ss_pred CCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCch
Q 045120 250 GSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLF 298 (374)
Q Consensus 250 ~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlP 298 (374)
.....|.++.|+.++-...+...+....-.-+ .+...-|++.. +|..
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a-~Gs~ 214 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAA-EGSL 214 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHc-CCCh
Confidence 44457899999999888888777753221111 23334566666 6643
No 122
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.68 E-value=0.098 Score=49.57 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=51.5
Q ss_pred CCCccHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch----------hhHHH---HHHH
Q 045120 142 NGGIGKTTLAKEFAKQARED---K-LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE----------EAEYR---RASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~~~---~~~~ 204 (374)
..|+|||+|+.+++-..... + .-..++||+....|++.++.+ +++.++..... .+.++ ....
T Consensus 134 ~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~ 212 (344)
T PLN03187 134 EFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYEHQYNLLLG 212 (344)
T ss_pred CCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHHHHHHHHHH
Confidence 88999999998886433221 1 124689999999999888765 56666554211 12222 3334
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 045120 205 LYERLKNENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~~ 224 (374)
+...+...+--|||+|.+..
T Consensus 213 l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 213 LAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHhcCCCEEEEeCcHH
Confidence 44445443556899998753
No 123
>PRK04132 replication factor C small subunit; Provisional
Probab=95.67 E-value=0.33 Score=51.37 Aligned_cols=142 Identities=9% Similarity=0.098 Sum_probs=77.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF-DRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILA 220 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlD 220 (374)
+-++||||+|..+.++.--. .+ ..++-++.|...+...+. +++..+....+ +.+.+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 66899999999999864221 22 246777777665555433 33333211100 001145788899
Q ss_pred CCCCcc--ccccccCc---CCCC-------CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 045120 221 NIWKLL--DLETVKIP---FRND-------SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAIN 288 (374)
Q Consensus 221 dv~~~~--~~~~l~~~---~~~~-------TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~ 288 (374)
++.... ....|... .+.. +....+..........+.+.+++.++-.+.+...+......- -.+....
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-~~e~L~~ 716 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQA 716 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHH
Confidence 887542 22222211 1122 222222111112224789999999998888887664221111 1346678
Q ss_pred HHHHccCCchHHH
Q 045120 289 VAKACGAGLFCTL 301 (374)
Q Consensus 289 I~~~c~~GlPLai 301 (374)
|++.| +|-+-.+
T Consensus 717 Ia~~s-~GDlR~A 728 (846)
T PRK04132 717 ILYIA-EGDMRRA 728 (846)
T ss_pred HHHHc-CCCHHHH
Confidence 99999 8877433
No 124
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.63 E-value=0.095 Score=46.54 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH----hCcC------CchhhHHHHHHHHHHHHhc
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEK----LGLE------LSEEAEYRRASRLYERLKN 211 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----l~~~------~~~~~~~~~~~~l~~~L~~ 211 (374)
.+|+|||+||.++..+... .-..++|++.. .++...+.+ +... +..+ .......+..+.+...+..
T Consensus 31 ~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 106 (225)
T PRK09361 31 PPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEKLAKE 106 (225)
T ss_pred CCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999998876542 24578899877 555554432 2222 1000 0001122233444445544
Q ss_pred CCeEEEEEeCCC
Q 045120 212 ENKILVILANIW 223 (374)
Q Consensus 212 ~kr~LlVlDdv~ 223 (374)
+--++|+|.+.
T Consensus 107 -~~~lvVIDsi~ 117 (225)
T PRK09361 107 -NVGLIVLDSAT 117 (225)
T ss_pred -cccEEEEeCcH
Confidence 67799999874
No 125
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.41 Score=44.90 Aligned_cols=178 Identities=13% Similarity=0.159 Sum_probs=92.2
Q ss_pred ccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcC-------------CCCeEEEEEeCCCCCH
Q 045120 122 EAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDK-------------LFDRVVFSEVSQTSDI 178 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~-------------~F~~~~wv~vs~~~~~ 178 (374)
..++|-+..++.+.+.+..+ ..|+||+++|..+.+..-... .++-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 45889999999999998766 779999999988876532111 1222344421100000
Q ss_pred HHHHHHHHHHhCc--CCchhhHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--c----cccccCcCCCC------Cc
Q 045120 179 KKIQGDIAEKLGL--ELSEEAEYRRASRLYERLKN----ENKILVILANIWKLL--D----LETVKIPFRND------SR 240 (374)
Q Consensus 179 ~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~L~~----~kr~LlVlDdv~~~~--~----~~~l~~~~~~~------TR 240 (374)
..+-..-+...+. .....-.-+..+.+.+.+.. +++-++|+|++..-. . +..+..| |.. +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-GNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC-CCCeEEEEECC
Confidence 0000001111110 00000001123345555541 356788899886432 1 2233333 233 22
Q ss_pred chhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 241 DNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 241 ~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
...+..........+++.+++.++..+.+.+........ .....++..+ +|.|..+...-
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a-~Gs~~~al~~l 222 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALA-QGSPGAAIANI 222 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHc-CCCHHHHHHHH
Confidence 222222222233478999999999999999865321111 1124788889 99997654433
No 126
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.57 E-value=0.044 Score=51.36 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCC------chhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLEL------SEEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~L~~~kr~ 215 (374)
++|+||||||.+++..... .-..++|++....+++. .+++++... ...+.++....+...++.+.--
T Consensus 63 p~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 63 PESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 8899999999998765432 23568899887777653 345555431 1123444555555555554677
Q ss_pred EEEEeCCCC
Q 045120 216 LVILANIWK 224 (374)
Q Consensus 216 LlVlDdv~~ 224 (374)
+||+|-|..
T Consensus 136 lIVIDSvaa 144 (325)
T cd00983 136 LIVVDSVAA 144 (325)
T ss_pred EEEEcchHh
Confidence 999998753
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.55 E-value=0.091 Score=52.00 Aligned_cols=139 Identities=15% Similarity=0.094 Sum_probs=74.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||+|++.+.+.......--.++|++. .++...+...+... ....+.+.++. .-+|||||
T Consensus 156 ~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~--~dlLiiDD 219 (450)
T PRK00149 156 GVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN--------TMEEFKEKYRS--VDVLLIDD 219 (450)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHHHHHHHHhc--CCEEEEeh
Confidence 8899999999999997652211123456543 33344444444211 11234444443 45889999
Q ss_pred CCCccc---c-ccccC---c-CCCC-------Ccc--------hhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCC
Q 045120 222 IWKLLD---L-ETVKI---P-FRND-------SRD--------NNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVE 278 (374)
Q Consensus 222 v~~~~~---~-~~l~~---~-~~~~-------TR~--------~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~ 278 (374)
+..... . +.+.. . ...+ ++. ..+ ...+....++++++.+.++-..++.+.+.....
T Consensus 220 i~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l-~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~ 298 (450)
T PRK00149 220 IQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERL-RSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI 298 (450)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH-HhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC
Confidence 963210 1 11111 1 1111 111 111 123444458999999999999999998853211
Q ss_pred CcchHHHHHHHHHHccCCchH
Q 045120 279 NCKFKSTAINVAKACGAGLFC 299 (374)
Q Consensus 279 ~~~l~~~~~~I~~~c~~GlPL 299 (374)
.--.++..-|++.+ +|..-
T Consensus 299 -~l~~e~l~~ia~~~-~~~~R 317 (450)
T PRK00149 299 -DLPDEVLEFIAKNI-TSNVR 317 (450)
T ss_pred -CCCHHHHHHHHcCc-CCCHH
Confidence 11135566777777 65543
No 128
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.55 E-value=0.052 Score=48.94 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
.+|+|||+||..+.+..... -..+++++ ..+++..+-..+.. ...+. ..+.+.+.. .=||||||
T Consensus 107 ~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~~~----~~~l~~l~~--~dlLvIDD 170 (244)
T PRK07952 107 KPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SETSE----EQLLNDLSN--VDLLVIDE 170 (244)
T ss_pred CCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--ccccH----HHHHHHhcc--CCEEEEeC
Confidence 78999999999999976533 23556664 34455444443321 11111 223344443 45889999
Q ss_pred CCCc
Q 045120 222 IWKL 225 (374)
Q Consensus 222 v~~~ 225 (374)
+-..
T Consensus 171 ig~~ 174 (244)
T PRK07952 171 IGVQ 174 (244)
T ss_pred CCCC
Confidence 8643
No 129
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.54 E-value=0.048 Score=51.06 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=49.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc------hhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS------EEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~~kr~ 215 (374)
..|+||||||.++...... .=..++|++....++.. .+++++.... ..+.++....+...++.+.--
T Consensus 63 ~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 63 PESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 8899999999988775542 23567899877766653 3555554321 123444555555555554677
Q ss_pred EEEEeCCCC
Q 045120 216 LVILANIWK 224 (374)
Q Consensus 216 LlVlDdv~~ 224 (374)
+||+|.|..
T Consensus 136 lIVIDSv~a 144 (321)
T TIGR02012 136 IIVVDSVAA 144 (321)
T ss_pred EEEEcchhh
Confidence 999999864
No 130
>PRK06526 transposase; Provisional
Probab=95.52 E-value=0.17 Score=45.89 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|+|||+||..+.+...
T Consensus 106 p~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 899999999999988654
No 131
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.34 Score=45.80 Aligned_cols=87 Identities=9% Similarity=0.069 Sum_probs=49.7
Q ss_pred CeEEEEEeCCCCcc--c----cccccCcCCCC-----Ccch-hHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCc
Q 045120 213 NKILVILANIWKLL--D----LETVKIPFRND-----SRDN-NVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENC 280 (374)
Q Consensus 213 kr~LlVlDdv~~~~--~----~~~l~~~~~~~-----TR~~-~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~ 280 (374)
++-.+|+|++..-. . +..+..|-+.. |.+. .+......--..+.+.+++.+++.+.+....... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--~- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--D- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC--C-
Confidence 34455779987532 2 33343333333 3322 2222122223468999999999998888754211 1
Q ss_pred chHHHHHHHHHHccCCchHHHHHHh
Q 045120 281 KFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 281 ~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
.+.+..++..+ +|.|+.+..+.
T Consensus 183 --~~~~~~~l~la-~Gsp~~A~~l~ 204 (328)
T PRK05707 183 --ERERIELLTLA-GGSPLRALQLH 204 (328)
T ss_pred --hHHHHHHHHHc-CCCHHHHHHHH
Confidence 23345678899 99998665554
No 132
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.50 E-value=0.024 Score=48.53 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=36.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||.||..+.+..... .+ .+.|++ ..+++..+-. ........ .+.+.+.+ -=||||||
T Consensus 55 ~~G~GKThLa~ai~~~~~~~-g~-~v~f~~------~~~L~~~l~~----~~~~~~~~----~~~~~l~~--~dlLilDD 116 (178)
T PF01695_consen 55 PPGTGKTHLAVAIANEAIRK-GY-SVLFIT------ASDLLDELKQ----SRSDGSYE----ELLKRLKR--VDLLILDD 116 (178)
T ss_dssp STTSSHHHHHHHHHHHHHHT-T---EEEEE------HHHHHHHHHC----CHCCTTHC----HHHHHHHT--SSCEEEET
T ss_pred hHhHHHHHHHHHHHHHhccC-Cc-ceeEee------cCceeccccc----cccccchh----hhcCcccc--ccEecccc
Confidence 88999999999998865432 23 356664 3444444432 21111111 22333433 46888999
Q ss_pred CCC
Q 045120 222 IWK 224 (374)
Q Consensus 222 v~~ 224 (374)
+-.
T Consensus 117 lG~ 119 (178)
T PF01695_consen 117 LGY 119 (178)
T ss_dssp CTS
T ss_pred cce
Confidence 864
No 133
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.49 E-value=0.13 Score=45.60 Aligned_cols=82 Identities=20% Similarity=0.226 Sum_probs=47.3
Q ss_pred CCCccHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCC----------chhhHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDK----LFDRVVFSEVSQTSDIKKIQGDIAEKLGLEL----------SEEAEYRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~~~~l~~ 207 (374)
.+|+|||+||.++.......+ .=..++|++....++...+. .+.+..+... ...+.++....+.+
T Consensus 27 ~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 105 (226)
T cd01393 27 EFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGEQQLEIVEE 105 (226)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHHHHHHHHHH
Confidence 889999999999876543221 01467899887777765544 3333332210 01133344444444
Q ss_pred HHh---cCCeEEEEEeCCCC
Q 045120 208 RLK---NENKILVILANIWK 224 (374)
Q Consensus 208 ~L~---~~kr~LlVlDdv~~ 224 (374)
.+. ..+--|+|+|.+..
T Consensus 106 ~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 106 LERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHhhcCCeeEEEEcCcch
Confidence 433 43556999998753
No 134
>PRK07261 topology modulation protein; Provisional
Probab=95.48 E-value=0.052 Score=46.12 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=19.4
Q ss_pred CCCccHHHHHHHHHHHhhhc-CCCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQARED-KLFDRVVF 169 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 169 (374)
++|+||||||+.+....... -+.|...|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 78999999999998754321 13455555
No 135
>PRK09354 recA recombinase A; Provisional
Probab=95.45 E-value=0.057 Score=51.07 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=50.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCC------chhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLEL------SEEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~L~~~kr~ 215 (374)
+.|+||||||.++...... .=..++|++....++.. .++.++... ...+.++....+...++.++--
T Consensus 68 ~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 68 PESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 8899999999998765442 23568899888877753 455555431 1123444555555555555677
Q ss_pred EEEEeCCCC
Q 045120 216 LVILANIWK 224 (374)
Q Consensus 216 LlVlDdv~~ 224 (374)
+||+|-|..
T Consensus 141 lIVIDSvaa 149 (349)
T PRK09354 141 LIVVDSVAA 149 (349)
T ss_pred EEEEeChhh
Confidence 999999864
No 136
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.44 E-value=0.079 Score=48.60 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=97.1
Q ss_pred cccccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEE-EEEeCCCCCHHHHHHHHHHH
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVV-FSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~ 188 (374)
.....++|-+..+.-+.+.+... +.|.|||+-|..+....--.+.|.+.+ =.++|..-.+.-+-..+ .
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-k- 110 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-K- 110 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-c-
Confidence 34566889999999988888763 999999998888776544445665543 34555443322110000 0
Q ss_pred hCcCCchhhHHHHHHHHHHHH----h-cCCe-EEEEEeCCCCc--cccccccCcCCC---CCcchhHhhh-------hcC
Q 045120 189 LGLELSEEAEYRRASRLYERL----K-NENK-ILVILANIWKL--LDLETVKIPFRN---DSRDNNVVLL-------SMG 250 (374)
Q Consensus 189 l~~~~~~~~~~~~~~~l~~~L----~-~~kr-~LlVlDdv~~~--~~~~~l~~~~~~---~TR~~~va~~-------~~~ 250 (374)
+ ..++.-.. . ..+. -.+|||++.+. +.|..+...+.+ .||.--|..+ ...
T Consensus 111 --------~----fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 111 --------N----FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred --------C----HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0 00111111 0 0123 36788988754 446666443322 2333222100 001
Q ss_pred CCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 251 SKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 251 ~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
.-..+..++|.+++...-+..++......-+ .+..+.|++.++|-|--|+.++-+
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1125788999999999988888863332222 355678999995556666666655
No 137
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.29 E-value=0.059 Score=53.99 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=26.3
Q ss_pred CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC
Q 045120 253 DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG 296 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G 296 (374)
..+.++..+.++-.++|..+.......++. . ...+++.+ .|
T Consensus 218 ~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~-~-l~~la~~t-~G 258 (495)
T TIGR01241 218 RQVVVDLPDIKGREEILKVHAKNKKLAPDV-D-LKAVARRT-PG 258 (495)
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCCcch-h-HHHHHHhC-CC
Confidence 468888889989999998877533221111 1 23667777 65
No 138
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.082 Score=52.78 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=52.7
Q ss_pred cccccccHHHHHHHHHHhhcC---------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
...+-|.+..++++.+++..- ++|+|||.||+.+.++..+- |++++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 345778998888887776421 88999999999999976643 3443322
Q ss_pred HHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045120 180 KIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
+|+.... .++ ++.+..+++.-.+.-.+++.+|++.
T Consensus 258 ----eivSGvS----GES-EkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ----EIVSGVS----GES-EKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ----hhhcccC----ccc-HHHHHHHHHHHhccCCeEEEeeccc
Confidence 2222222 122 2334444444444478999999986
No 139
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.26 E-value=1.2 Score=40.10 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=91.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCcCCchh---hHHHHHHHHHHHHhcCCe-EE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-TSDIKKIQGDIAEKLGLELSEE---AEYRRASRLYERLKNENK-IL 216 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~l~~~L~~~kr-~L 216 (374)
.-|+|||++.+.+.....- |.++=|.+.. ..+...+...|+..+....... ........|....++++| ..
T Consensus 59 evGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~ 134 (269)
T COG3267 59 EVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVV 134 (269)
T ss_pred cCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeE
Confidence 5699999999955442221 2222244443 4677888888888887632111 223344556666666678 99
Q ss_pred EEEeCCCCc--ccccccc-----------------CcCCCC-C--cchhHhhhhcCCCCc-eecCCCCHHHHHHHHHHhc
Q 045120 217 VILANIWKL--LDLETVK-----------------IPFRND-S--RDNNVVLLSMGSKDN-FLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 217 lVlDdv~~~--~~~~~l~-----------------~~~~~~-T--R~~~va~~~~~~~~~-~~l~~L~~~~s~~Lf~~~a 273 (374)
++.|+.... +.++.++ ..-|.- - |...... .-.-..+ |.++|++.++...++....
T Consensus 135 l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e-~~~R~~ir~~l~P~~~~~t~~yl~~~L 213 (269)
T COG3267 135 LMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRE-LEQRIDIRIELPPLTEAETGLYLRHRL 213 (269)
T ss_pred EeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHh-hhheEEEEEecCCcChHHHHHHHHHHH
Confidence 999998643 1222211 111111 1 2221111 1111124 9999999998888887776
Q ss_pred CCCCCCcc--hHHHHHHHHHHccCCchHHHHHHhc
Q 045120 274 GDDVENCK--FKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 274 ~~~~~~~~--l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
.....+.. -.+....|.... .|.|.+|.-++.
T Consensus 214 e~a~~~~~l~~~~a~~~i~~~s-qg~P~lin~~~~ 247 (269)
T COG3267 214 EGAGLPEPLFSDDALLLIHEAS-QGIPRLINNLAT 247 (269)
T ss_pred hccCCCcccCChhHHHHHHHHh-ccchHHHHHHHH
Confidence 52221111 134556788888 999999987765
No 140
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.21 E-value=0.15 Score=48.33 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCCccHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch----------hhHHH---HHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDK----LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE----------EAEYR---RASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~~~---~~~~ 204 (374)
.+|+|||+|+..++-...... .=..++|++....|++.++. +|++.++..... .+.++ ....
T Consensus 131 ~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~ 209 (342)
T PLN03186 131 EFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNTDHQSELLLE 209 (342)
T ss_pred CCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCHHHHHHHHHH
Confidence 889999999988775433211 11368999999999988764 556766543211 12222 2333
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 045120 205 LYERLKNENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~~ 224 (374)
+...+...+--|||+|-+..
T Consensus 210 ~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 210 AASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHhhccCCCEEEEeCcHH
Confidence 33334443567999998753
No 141
>PRK12377 putative replication protein; Provisional
Probab=95.18 E-value=0.07 Score=48.21 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=39.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||+||.++.+...-. .-.++++++. +++..|-...... .+. ..+.+.+. +-=||||||
T Consensus 109 ~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~~~----~~~l~~l~--~~dLLiIDD 171 (248)
T PRK12377 109 KPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---QSG----EKFLQELC--KVDLLVLDE 171 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---chH----HHHHHHhc--CCCEEEEcC
Confidence 67999999999999976532 3345666543 4444444433211 111 12333333 467999999
Q ss_pred CC
Q 045120 222 IW 223 (374)
Q Consensus 222 v~ 223 (374)
+-
T Consensus 172 lg 173 (248)
T PRK12377 172 IG 173 (248)
T ss_pred CC
Confidence 94
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.10 E-value=0.25 Score=50.23 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=63.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||.|++.+.+.......--.++|++ ..++..++...+... ....+++.+.+ -=+|||||
T Consensus 322 ~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~~--~DLLlIDD 385 (617)
T PRK14086 322 ESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYRE--MDILLVDD 385 (617)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhhc--CCEEEEeh
Confidence 679999999999999654221112345654 334444444333211 11233344433 35788899
Q ss_pred CCCcc---ccc----cccCcCCC-C-----C----------cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcC
Q 045120 222 IWKLL---DLE----TVKIPFRN-D-----S----------RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 222 v~~~~---~~~----~l~~~~~~-~-----T----------R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
+.... .+. .+...+.. + | -...+. ..+...-++.|++.+.+.-..++.+.+.
T Consensus 386 Iq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~-SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 386 IQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLR-NRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred hccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHH-hhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 86431 111 11111111 1 1 112222 2455556899999999999999998875
No 143
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.05 E-value=0.15 Score=46.56 Aligned_cols=84 Identities=29% Similarity=0.347 Sum_probs=53.4
Q ss_pred CCCccHHHHHHHHHHHhhh--cCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQARE--DKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l 205 (374)
-.|+|||+|+..+.++... +++-+.++++-+++.. +..++.+++...=... ..+++.. ...-.+
T Consensus 77 g~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~ai 156 (276)
T cd01135 77 GSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTT 156 (276)
T ss_pred CCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 5689999999998876541 1234788999998875 4566666665532211 1112211 123456
Q ss_pred HHHHhc--CCeEEEEEeCCCCc
Q 045120 206 YERLKN--ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~--~kr~LlVlDdv~~~ 225 (374)
.++++. +++.|+++||+...
T Consensus 157 AEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 157 AEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHhccCCeEEEEEcChhHH
Confidence 777763 48999999998643
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.03 E-value=0.18 Score=49.72 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
+.|+|||+|++.+.+..... --.+++++ ...+...+...+... ....+++.+. +.-+|++||
T Consensus 149 ~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~--~~dvLiIDD 210 (445)
T PRK12422 149 PEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR--NVDALFIED 210 (445)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc--cCCEEEEcc
Confidence 78999999999999975422 23345554 234444554444321 1123333333 345888999
Q ss_pred CCCccc--c--ccccCc---C-CCC-------Ccc--------hhHhhhhcCCCCceecCCCCHHHHHHHHHHhcC
Q 045120 222 IWKLLD--L--ETVKIP---F-RND-------SRD--------NNVVLLSMGSKDNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 222 v~~~~~--~--~~l~~~---~-~~~-------TR~--------~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
+..... + +.+... + ..+ ++. ..+. ..+....++.+++++.++-..++.+.+.
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~-SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLI-SRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHH-hhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 864311 1 111111 0 111 111 1221 2344446899999999999999998775
No 145
>PRK05642 DNA replication initiation factor; Validated
Probab=95.01 E-value=0.37 Score=43.16 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=34.2
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHH
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
.+....++++++++.++-.+++...+...... --.++..-|++.+ .|-.-.+
T Consensus 154 Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~-l~~ev~~~L~~~~-~~d~r~l 205 (234)
T PRK05642 154 RLTLALVFQMRGLSDEDKLRALQLRASRRGLH-LTDEVGHFILTRG-TRSMSAL 205 (234)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhc-CCCHHHH
Confidence 33444578999999999999999666422111 1146677888888 6654433
No 146
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=1.8 Score=41.53 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=43.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCcCCchh-hHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-TSDIKKIQGDIAEKLGLELSEE-AEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
+.|+||||++..+......+.....+.+++... .....+-++...+.++.+.... +..+....+ ..+.+ +-+|++
T Consensus 145 ptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~--~DlVLI 221 (374)
T PRK14722 145 PTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRN--KHMVLI 221 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcC--CCEEEE
Confidence 889999999999987654221123455555322 1234555566666776654332 222222222 33333 466778
Q ss_pred eCCC
Q 045120 220 ANIW 223 (374)
Q Consensus 220 Ddv~ 223 (374)
|..-
T Consensus 222 DTaG 225 (374)
T PRK14722 222 DTIG 225 (374)
T ss_pred cCCC
Confidence 9873
No 147
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.025 Score=51.21 Aligned_cols=47 Identities=15% Similarity=-0.005 Sum_probs=33.6
Q ss_pred ceecCCCCHHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHccCCchHHHHHH
Q 045120 254 NFLIANITEEEAWRLFKIMNG--DDVENCKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 254 ~~~l~~L~~~~s~~Lf~~~a~--~~~~~~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
+.+++--+.+|-.++..+.+. +-... .+-+.+|+++. .|-|--..-+
T Consensus 175 ~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rS-RGTPRIAnRL 223 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRS-RGTPRIANRL 223 (332)
T ss_pred eeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhc-cCCcHHHHHH
Confidence 678888899999999998885 22111 35567899999 9999644333
No 148
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.94 E-value=1.2 Score=47.20 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=29.5
Q ss_pred cccccHHHHHHHHHHhhc--------C-------CCCccHHHHHHHHHHHhh
Q 045120 123 AFESRVSNLKSTQNALTN--------A-------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~--------~-------~gGiGKTtLA~~v~~~~~ 159 (374)
.++|.+..++.|.+++.. + +.|+|||+||+.+.+...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 477989888888886531 1 889999999999998653
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.93 E-value=0.043 Score=53.76 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=30.5
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~ 159 (374)
...+.|.+..+++|.+.+.-. +.|+|||+||+.+++...
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345778999998887776421 889999999999999543
No 150
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.91 E-value=0.24 Score=43.73 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
.+|+||||||.++...... .=..++|++....+.
T Consensus 27 ~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~~ 60 (218)
T cd01394 27 PPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence 8899999999998875532 224567887655543
No 151
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.1 Score=48.89 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=55.1
Q ss_pred cccccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 117 SNKVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 117 ~~~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
|...+..+=|-++.+++|.+.+.-+ ++|.|||-||++|+|+.. ..| +-|..
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtF-----Irvvg 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATF-----IRVVG 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceE-----EEecc
Confidence 3344556778899999888876543 899999999999999554 223 43332
Q ss_pred CCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045120 175 TSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 175 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
+ ++++..-. .-..+...+++.-+.+..+.|.+|.+.
T Consensus 219 S--------ElVqKYiG-----EGaRlVRelF~lArekaPsIIFiDEID 254 (406)
T COG1222 219 S--------ELVQKYIG-----EGARLVRELFELAREKAPSIIFIDEID 254 (406)
T ss_pred H--------HHHHHHhc-----cchHHHHHHHHHHhhcCCeEEEEechh
Confidence 1 22222211 112344556666666678999999885
No 152
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.84 E-value=0.34 Score=45.58 Aligned_cols=82 Identities=27% Similarity=0.342 Sum_probs=50.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC----CeEEEEEeCCCCCHHHHHHHHHHHhCcCCch-------------hhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF----DRVVFSEVSQTSDIKKIQGDIAEKLGLELSE-------------EAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~ 204 (374)
.+|+|||+|+.++.-.......+ ..++||+....+++..+.+ +++.++..... .........
T Consensus 110 ~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~ 188 (317)
T PRK04301 110 EFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNSDHQMLLAEK 188 (317)
T ss_pred CCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCHHHHHHHHHH
Confidence 88999999999987654322111 3789999988888877654 44555432110 111223445
Q ss_pred HHHHHhc-CCeEEEEEeCCCC
Q 045120 205 LYERLKN-ENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~-~kr~LlVlDdv~~ 224 (374)
+.+.+.. .+--|||+|-+..
T Consensus 189 l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 189 AEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHhccCceeEEEEECchH
Confidence 5555543 2455999998753
No 153
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.84 E-value=0.077 Score=52.24 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=32.6
Q ss_pred ccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhh
Q 045120 122 EAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~ 159 (374)
..++||++.++.+...+..+ .+|+|||+||+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 34899999999998888766 889999999999988543
No 154
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.82 E-value=0.24 Score=46.57 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCCccHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch----------hhHHH---HHHH
Q 045120 142 NGGIGKTTLAKEFAKQARED---K-LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE----------EAEYR---RASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~~~---~~~~ 204 (374)
..|+|||||+..++...... + .-..++|++-...++..++ .++++.++..... .+.++ ....
T Consensus 104 ~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~ 182 (316)
T TIGR02239 104 EFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNTDHQLQLLQQ 182 (316)
T ss_pred CCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCChHHHHHHHHH
Confidence 78999999999887643221 1 1135799998887887764 4455655443211 12222 2333
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 045120 205 LYERLKNENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~~ 224 (374)
+...+...+--|||+|-+..
T Consensus 183 ~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 183 AAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHhhccCCccEEEEECcHH
Confidence 33444443566899998753
No 155
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=2.5 Score=38.96 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=53.4
Q ss_pred ccccccHHHHHHHHHHhhcC---------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKK 180 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 180 (374)
..+.|.|..++.|.+.+.-+ ++|.||+.||++|..... . -|.+||.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH----H
Confidence 45778888888887765433 899999999999998543 2 23444432 1
Q ss_pred HHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045120 181 IQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 181 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
+. -.++| ..+.+...|++.-+..|.-+|.+|.+.
T Consensus 202 Lv---SKWmG------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 202 LV---SKWMG------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred HH---HHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 11 11222 123455667777676689999999885
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.35 Score=50.31 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=59.5
Q ss_pred ccccccHHHHHHHHHHhhcC------------------CCCccHHHHHHHHHHHhhhcCCC---CeEEEEEeCCCCCHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA------------------NGGIGKTTLAKEFAKQAREDKLF---DRVVFSEVSQTSDIKK 180 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~------------------~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 180 (374)
..++|-+..++.+.+.+... +-|+|||-||+.+.... | +..+-+++|.-..-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L-----fg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL-----FGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh-----cCCCccceeechHHHHHHH-
Confidence 34778888888877776532 78999999999998733 5 334444444332211
Q ss_pred HHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeE-EEEEeCCCCc--cccccccCcCCCC
Q 045120 181 IQGDIAEKLGLELSEEAEYRRASRLYERLKNENKI-LVILANIWKL--LDLETVKIPFRND 238 (374)
Q Consensus 181 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~ 238 (374)
.+.+-+|.+..--.-++ -..|-+..+. +.| .|.||.+... +.++-|...+.+|
T Consensus 565 ---sVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 ---SVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---HHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 22333343311110011 2345555556 666 8889999854 3454454444444
No 157
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.79 E-value=1.4 Score=41.38 Aligned_cols=86 Identities=15% Similarity=0.018 Sum_probs=51.0
Q ss_pred CeEEEEEeCCCCcc------ccccccCcCCCC-----Cc-chhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCc
Q 045120 213 NKILVILANIWKLL------DLETVKIPFRND-----SR-DNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENC 280 (374)
Q Consensus 213 kr~LlVlDdv~~~~------~~~~l~~~~~~~-----TR-~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~ 280 (374)
++-++|+|++..-. -+..+..|-+.. |. ...+......--..+.+.+++.+++.+.+... + . +
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~-~- 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G--V-S- 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C--C-C-
Confidence 56788999987442 144444444433 22 22222212222236889999999998888753 1 1 1
Q ss_pred chHHHHHHHHHHccCCchHHHHHHhc
Q 045120 281 KFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 281 ~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
..-+..++..+ +|.|+.+.....
T Consensus 188 --~~~a~~~~~l~-~G~p~~A~~~~~ 210 (319)
T PRK08769 188 --ERAAQEALDAA-RGHPGLAAQWLR 210 (319)
T ss_pred --hHHHHHHHHHc-CCCHHHHHHHhc
Confidence 12255778999 999987766654
No 158
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.74 E-value=0.12 Score=45.61 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=47.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||+|+..+.++.. -+..+++.+++.. ...++.+++...-... ..+++.. ...-.+.+
T Consensus 23 ~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AE 98 (215)
T PF00006_consen 23 GAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAE 98 (215)
T ss_dssp STTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred CcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhH
Confidence 789999999999988764 3456888888764 5566666664431111 1111111 11223444
Q ss_pred HHh-cCCeEEEEEeCCC
Q 045120 208 RLK-NENKILVILANIW 223 (374)
Q Consensus 208 ~L~-~~kr~LlVlDdv~ 223 (374)
+++ .++..|+++||+.
T Consensus 99 yfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 99 YFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHTTSEEEEEEETHH
T ss_pred HHhhcCCceeehhhhhH
Confidence 454 2599999999984
No 159
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.4 Score=49.67 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=85.7
Q ss_pred cccccccHHHH---HHHHHHhhcC------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 121 YEAFESRVSNL---KSTQNALTNA------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 121 ~~~~vGr~~~~---~~i~~~L~~~------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
..++.|-|+.+ .++++.|.++ ++|+|||-||++++....+- |+++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 44678877555 4556667665 88999999999999866533 4544432
Q ss_pred HHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc-----------------cccccCcC---CCC-
Q 045120 180 KIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD-----------------LETVKIPF---RND- 238 (374)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-----------------~~~l~~~~---~~~- 238 (374)
+.++.+... ...+...|...-+....++|.+|++....- +.++...+ ...
T Consensus 379 ----EFvE~~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 111111111 022334444444444678888888764321 11111100 000
Q ss_pred -------CcchhHhhh---hcC-CCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHH
Q 045120 239 -------SRDNNVVLL---SMG-SKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCT 300 (374)
Q Consensus 239 -------TR~~~va~~---~~~-~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLa 300 (374)
|++.++.+. ..| -...+.++.=+.....++|.-++.......+..++++ |+..- -|++=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t-~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLT-PGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcC-CCCcHH
Confidence 444444321 111 1235677777778888899888864433334445555 66555 665544
No 160
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.60 E-value=0.2 Score=46.00 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=50.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCc---CCch--hhHHHHHHHHHHHHhcCCeEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGL---ELSE--EAEYRRASRLYERLKNENKIL 216 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~---~~~~--~~~~~~~~~l~~~L~~~kr~L 216 (374)
+.|+||||||.+++-... ..-..++|++..+.+++..+.+--...+.. ..+. ......++.+.....+ +--|
T Consensus 68 ~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~-~i~L 144 (279)
T COG0468 68 PESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAE-KIDL 144 (279)
T ss_pred CCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccC-CCCE
Confidence 889999999999877554 334588999999999988765433331221 1111 1222334444444443 4679
Q ss_pred EEEeCCCCc
Q 045120 217 VILANIWKL 225 (374)
Q Consensus 217 lVlDdv~~~ 225 (374)
+|+|.|-..
T Consensus 145 vVVDSvaa~ 153 (279)
T COG0468 145 LVVDSVAAL 153 (279)
T ss_pred EEEecCccc
Confidence 999988643
No 161
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.60 E-value=0.39 Score=50.65 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=83.1
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
...+.|.+..++.|.+.+.-. +.|+|||+||+.+.+... ..| +.++.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----
Confidence 345778888877776655321 889999999999998643 222 22221
Q ss_pred HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------------ccccccCcCC-----CC-
Q 045120 179 KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--------------DLETVKIPFR-----ND- 238 (374)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--------------~~~~l~~~~~-----~~- 238 (374)
.+ ++.. ....+ +.....+.+..+....++|+||++.... ....+...+. .+
T Consensus 521 ~~----l~~~----~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PE----ILSK----WVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HH----Hhhc----ccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 1111 11111 2233444444444367999999985320 0111111111 11
Q ss_pred -----CcchhHhhhh-c---CCCCceecCCCCHHHHHHHHHHhcCCCCC--CcchHHHHHHHHHHccCCc-hHHHHHHh
Q 045120 239 -----SRDNNVVLLS-M---GSKDNFLIANITEEEAWRLFKIMNGDDVE--NCKFKSTAINVAKACGAGL-FCTLTTNA 305 (374)
Q Consensus 239 -----TR~~~va~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~--~~~l~~~~~~I~~~c~~Gl-PLai~~ig 305 (374)
|......... . .-...+.++..+.++-.++|+.+...... ..++ ..+++.| .|. +-.|..+.
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t-~g~sgadi~~~~ 665 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMT-EGYTGADIEAVC 665 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHc-CCCCHHHHHHHH
Confidence 3333221111 1 12347888888999999999877653222 2223 3566777 554 33344433
No 162
>PRK06921 hypothetical protein; Provisional
Probab=94.58 E-value=0.14 Score=46.82 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV 172 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 172 (374)
..|+|||+||.++.+....+. -..++|++.
T Consensus 125 ~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 125 QPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 789999999999999654221 234566654
No 163
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.58 E-value=0.3 Score=43.78 Aligned_cols=39 Identities=10% Similarity=0.301 Sum_probs=25.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
.+|+|||+||.++..... ..-..++|++... ++.++.+.
T Consensus 29 ~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 29 GPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHH
Confidence 889999999988655432 1235678887654 44455444
No 164
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.58 E-value=0.054 Score=50.59 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=39.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
..|+|||.||..+++.... ..+ .+.|++++ .++..+...++.. +. ....+.+. +-=||||||
T Consensus 164 ~~G~GKThLa~Aia~~l~~-~g~-~v~~~~~~------~l~~~lk~~~~~~----~~----~~~l~~l~--~~dlLiIDD 225 (306)
T PRK08939 164 DFGVGKSYLLAAIANELAK-KGV-SSTLLHFP------EFIRELKNSISDG----SV----KEKIDAVK--EAPVLMLDD 225 (306)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCC-CEEEEEHH------HHHHHHHHHHhcC----cH----HHHHHHhc--CCCEEEEec
Confidence 7799999999999997652 223 34566543 4555555544211 11 12222333 467999999
Q ss_pred CCC
Q 045120 222 IWK 224 (374)
Q Consensus 222 v~~ 224 (374)
+-.
T Consensus 226 iG~ 228 (306)
T PRK08939 226 IGA 228 (306)
T ss_pred CCC
Confidence 853
No 165
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.54 E-value=0.18 Score=49.35 Aligned_cols=83 Identities=18% Similarity=0.339 Sum_probs=53.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~l~~ 207 (374)
..|+|||+|+..+..+..- .+-+.++|+-++... ...++.+++...=... ..+++. ...+-.+.+
T Consensus 146 ~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAE 224 (449)
T TIGR03305 146 GAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAE 224 (449)
T ss_pred CCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 7799999999998776542 234788999888775 3555666655432111 111221 123346777
Q ss_pred HHhc--CCeEEEEEeCCCCc
Q 045120 208 RLKN--ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~--~kr~LlVlDdv~~~ 225 (374)
+++. +++.||++||+...
T Consensus 225 yfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 225 YFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHhcCCceEEEecChHHH
Confidence 7764 58999999999754
No 166
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=1.9 Score=40.65 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCCcc------ccccccCcCCCC-----C-cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCC
Q 045120 212 ENKILVILANIWKLL------DLETVKIPFRND-----S-RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVEN 279 (374)
Q Consensus 212 ~kr~LlVlDdv~~~~------~~~~l~~~~~~~-----T-R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~ 279 (374)
+++=.+|+|++..-. -+..+..|-+.. | ....+......--..+.+.+++.++..+.+.......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~--- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE--- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC---
Confidence 356688899987542 144444444433 2 2223322222223478999999999998888764211
Q ss_pred cchHHHHHHHHHHccCCchHHHHHH
Q 045120 280 CKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 280 ~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
...+...+..+ +|.|+.+..+
T Consensus 183 ---~~~~~~~~~l~-~g~p~~A~~~ 203 (325)
T PRK06871 183 ---ISEILTALRIN-YGRPLLALTF 203 (325)
T ss_pred ---hHHHHHHHHHc-CCCHHHHHHH
Confidence 11244667788 9999744333
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.48 E-value=1.2 Score=42.22 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.1
Q ss_pred ccc-cHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHh
Q 045120 124 FES-RVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 124 ~vG-r~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~ 158 (374)
++| -+..++.+.+.+..+ +.|+||||+|..+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455 556667777777655 88999999999987753
No 168
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.48 E-value=0.79 Score=44.93 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=38.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH--HHHHHHHHHHhCcCCch-hhHHHHHHHHHHHHhcCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI--KKIQGDIAEKLGLELSE-EAEYRRASRLYERLKNENKILVI 218 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~~~kr~LlV 218 (374)
++|+||||++..+.........-..+..|+.. .+.. ..-+....+.++.+... .+..+....+.+ +. ..=+|+
T Consensus 229 ptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~--~~DlVl 304 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYALLYGKKKVALITLD-TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR--DCDVIL 304 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC-ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC--CCCEEE
Confidence 89999999888876654311122345566543 2221 22233334445544322 223333333332 22 346788
Q ss_pred EeCC
Q 045120 219 LANI 222 (374)
Q Consensus 219 lDdv 222 (374)
+|..
T Consensus 305 IDt~ 308 (424)
T PRK05703 305 IDTA 308 (424)
T ss_pred EeCC
Confidence 8865
No 169
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.46 E-value=0.33 Score=39.95 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
..|+||||++..+...... .-..++|++.....+
T Consensus 7 ~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 7 PTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 6799999999999886542 235677887765543
No 170
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.45 E-value=0.4 Score=44.87 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=50.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch-------------hhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKL----FDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE-------------EAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~ 204 (374)
..|+|||||+.+++-+...... =..++||+....++..++. ++++.++..... .......+.
T Consensus 103 ~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~~~~~~lld~ 181 (310)
T TIGR02236 103 EFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNSNHQMLLVEK 181 (310)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCHHHHHHHHHH
Confidence 8899999999998765432111 1378999998888887765 445555433110 111123455
Q ss_pred HHHHHhcCC--eEEEEEeCCCC
Q 045120 205 LYERLKNEN--KILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~~k--r~LlVlDdv~~ 224 (374)
+.+.+...+ --+||+|.+..
T Consensus 182 l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 182 AEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHhcCCCceEEEEecchH
Confidence 666665422 45899998864
No 171
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.42 E-value=0.18 Score=49.62 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=53.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||+..+.+..... +-+.++++-++... ...++...+...-... ..+++.. ..+-.+.+
T Consensus 151 ~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAE 229 (461)
T PRK12597 151 GAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAE 229 (461)
T ss_pred CCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 67999999999888876533 56888898887765 4556666665432211 1122221 23346777
Q ss_pred HHhc--CCeEEEEEeCCCCc
Q 045120 208 RLKN--ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~--~kr~LlVlDdv~~~ 225 (374)
+++. +++.||++||+...
T Consensus 230 yfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 230 YLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHhcCCceEEEeccchHH
Confidence 7753 48999999999643
No 172
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.37 E-value=0.4 Score=46.59 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=35.4
Q ss_pred CeEEEEEeCCCCccccccccCcCCCC----------Cc---chhHhhhhcCCCCceecCCCCHHHHHH
Q 045120 213 NKILVILANIWKLLDLETVKIPFRND----------SR---DNNVVLLSMGSKDNFLIANITEEEAWR 267 (374)
Q Consensus 213 kr~LlVlDdv~~~~~~~~l~~~~~~~----------TR---~~~va~~~~~~~~~~~l~~L~~~~s~~ 267 (374)
++.+|+||.|.....|......+.+. +. ....+..-.|-...+++-|||-.|-..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 57899999999998887653332221 10 111222234555689999999998865
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.17 Score=52.59 Aligned_cols=90 Identities=14% Similarity=0.306 Sum_probs=52.7
Q ss_pred ccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKL----FDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
.+++||+.++.++++.|+.. -+|+|||++|.-++...--.+- =+..++. .++..+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~L------- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGSL------- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHHH-------
Confidence 46999999999999999854 5599999987777664321110 0112221 111111
Q ss_pred hCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045120 189 LGLELSEEAEYRRASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 189 l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
+........-+++...+.+.++..++..|.+|.+.
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiH 272 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIH 272 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 11111112334455555555554358999999875
No 174
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.26 E-value=2.5 Score=44.88 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=30.9
Q ss_pred ccccccHHHHHHHHHHhhcC---------------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTNA---------------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------------~gGiGKTtLA~~v~~~~ 158 (374)
...+|.+..+++|+++|... +.|+||||+|+.+....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34889999999999887631 88999999999999744
No 175
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=3.4 Score=39.77 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=44.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcCCch-hhHHHHHHHHHHHHh-cCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLELSE-EAEYRRASRLYERLK-NENKILV 217 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~-~~kr~Ll 217 (374)
+.|+||||++..+......++ ..+.+|+.. ++. ..+-++...+.++.+... .+..+....+ +.+. .+..=+|
T Consensus 214 ptGvGKTTt~akLA~~l~~~g--~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~~~~~~D~V 289 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLLKQN--RTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMTYVNCVDHI 289 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHHhcCCCCEE
Confidence 779999999988877553332 245566543 333 244556666666655322 2344443333 3333 1145688
Q ss_pred EEeCCC
Q 045120 218 ILANIW 223 (374)
Q Consensus 218 VlDdv~ 223 (374)
++|-.-
T Consensus 290 LIDTAG 295 (407)
T PRK12726 290 LIDTVG 295 (407)
T ss_pred EEECCC
Confidence 888764
No 176
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.25 E-value=0.076 Score=54.07 Aligned_cols=65 Identities=26% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHH-hcCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERL-KNENKILVILA 220 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~~kr~LlVlD 220 (374)
++|+||||||.-|+++.- | .++=|++|..-+...+-..|...+..+ ..| .+++..-||+|
T Consensus 334 ppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~--------------s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNH--------------SVLDADSRPVCLVID 394 (877)
T ss_pred CCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhc--------------cccccCCCcceEEEe
Confidence 899999999999998653 3 467788888877777666665554322 122 12367778888
Q ss_pred CCCCc
Q 045120 221 NIWKL 225 (374)
Q Consensus 221 dv~~~ 225 (374)
.+...
T Consensus 395 EIDGa 399 (877)
T KOG1969|consen 395 EIDGA 399 (877)
T ss_pred cccCC
Confidence 88754
No 177
>PTZ00035 Rad51 protein; Provisional
Probab=94.25 E-value=0.53 Score=44.66 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCCccHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch----------hhHHHH---HHH
Q 045120 142 NGGIGKTTLAKEFAKQARED---K-LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE----------EAEYRR---ASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~~~~---~~~ 204 (374)
..|+|||||+..+.-....- + .=..++|++-...++..++ .++++.++..... .+.++. ...
T Consensus 126 ~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~ 204 (337)
T PTZ00035 126 EFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQ 204 (337)
T ss_pred CCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHHHHHHHHHH
Confidence 88999999999887544321 1 1135679988877887774 4456665543210 122222 233
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 045120 205 LYERLKNENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~~ 224 (374)
+...+...+--|||+|-+..
T Consensus 205 ~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 205 AAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHhhccCccEEEEECcHH
Confidence 34444443567999998853
No 178
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.21 E-value=0.17 Score=53.30 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=30.3
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~ 158 (374)
...+.|.+..+++|.+.+... +.|+||||||+.+.+..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 445889999998887776321 78999999999999854
No 179
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.16 E-value=0.051 Score=51.49 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=32.4
Q ss_pred cccccHHHHHHHHHHhhcC---------------CCCccHHHHHHHHHHHhh
Q 045120 123 AFESRVSNLKSTQNALTNA---------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~~---------------~gGiGKTtLA~~v~~~~~ 159 (374)
.++|.++.++++++++... +.|+||||||..+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6999999999999998642 889999999999988764
No 180
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.14 E-value=0.29 Score=48.13 Aligned_cols=83 Identities=19% Similarity=0.341 Sum_probs=52.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||+..+..+..... =+.++++-++... ...++.+++...=... ..+++.. ...-.+.+
T Consensus 152 ~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAE 230 (463)
T PRK09280 152 GAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAE 230 (463)
T ss_pred CCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 679999999999877655332 2567888887765 4566666666532211 1122221 12345667
Q ss_pred HHhc--CCeEEEEEeCCCCc
Q 045120 208 RLKN--ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~--~kr~LlVlDdv~~~ 225 (374)
+++. +++.||++|++...
T Consensus 231 yfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 231 YFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHhcCCceEEEecchHHH
Confidence 7743 59999999999643
No 181
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.47 Score=48.54 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=38.0
Q ss_pred ccccccHHHHHHHHHHhhcC---------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
.+-+|.+..+++|++.|--. ++|+|||+|++.|+.-.. ..| +-++++.--|..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEA 390 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEA 390 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHH
Confidence 34679999999999988532 999999999999998443 444 334555444433
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=94.05 E-value=0.17 Score=52.08 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=26.1
Q ss_pred CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC
Q 045120 253 DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG 296 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G 296 (374)
..+.++..+.++-.++|+.++......+ ......++..+ .|
T Consensus 346 ~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t-~G 386 (638)
T CHL00176 346 RQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRT-PG 386 (638)
T ss_pred eEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcC-CC
Confidence 4678888899999999988875322111 12234566666 55
No 183
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.17 Score=49.80 Aligned_cols=83 Identities=23% Similarity=0.260 Sum_probs=50.5
Q ss_pred ccccccH---HHHHHHHHHhhcC------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH
Q 045120 122 EAFESRV---SNLKSTQNALTNA------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKK 180 (374)
Q Consensus 122 ~~~vGr~---~~~~~i~~~L~~~------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 180 (374)
+++-|-| .++++|++.|.++ ++|.|||-||++|.....|- | |...+..|+..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm- 376 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEM- 376 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhhh-
Confidence 4466766 5667888999876 88999999999999866543 2 33333333311
Q ss_pred HHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045120 181 IQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWK 224 (374)
Q Consensus 181 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 224 (374)
+-.. -..+...|+..-+..-.|.|.+|.+..
T Consensus 377 -----~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 377 -----FVGV--------GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred -----hhcc--------cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 0000 012233344444444689999998864
No 184
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.01 E-value=0.33 Score=41.74 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=22.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC--------CeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF--------DRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~ 175 (374)
.+|+||||++.++..+......| ..++|++....
T Consensus 40 ~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp CSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 89999999999988776543333 25678776655
No 185
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.98 E-value=0.23 Score=46.55 Aligned_cols=77 Identities=23% Similarity=0.228 Sum_probs=46.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc------hhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS------EEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~~kr~ 215 (374)
..|+||||||.++..... ..-..++||.....++... ++.+|...+ ..+.++....+...++.+..-
T Consensus 61 ~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~ 133 (322)
T PF00154_consen 61 PESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVD 133 (322)
T ss_dssp STTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSES
T ss_pred CCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHHhhccccc
Confidence 778999999999887543 2345689999988877543 445554422 223445555666666665667
Q ss_pred EEEEeCCCCc
Q 045120 216 LVILANIWKL 225 (374)
Q Consensus 216 LlVlDdv~~~ 225 (374)
++|+|-|-..
T Consensus 134 lVVvDSv~al 143 (322)
T PF00154_consen 134 LVVVDSVAAL 143 (322)
T ss_dssp EEEEE-CTT-
T ss_pred EEEEecCccc
Confidence 9999988644
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=2.9 Score=39.29 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=50.6
Q ss_pred CeEEEEEeCCCCcc--c----cccccCcCCCC-----Cc-chhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCc
Q 045120 213 NKILVILANIWKLL--D----LETVKIPFRND-----SR-DNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENC 280 (374)
Q Consensus 213 kr~LlVlDdv~~~~--~----~~~l~~~~~~~-----TR-~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~ 280 (374)
++=.+|+|++..-. . +..+..|-+.. |. ...+..+...--..+.+.+++.++..+.+......
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~----- 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT----- 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc-----
Confidence 45688888887432 1 33444444333 22 22332222222347889999999998888653111
Q ss_pred chHHHHHHHHHHccCCchHHHHHHhc
Q 045120 281 KFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 281 ~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
....++..+ +|.|+.+.-+..
T Consensus 183 ----~~~~~l~l~-~G~p~~A~~~~~ 203 (319)
T PRK06090 183 ----VPAYALKLN-MGSPLKTLAMMK 203 (319)
T ss_pred ----hHHHHHHHc-CCCHHHHHHHhC
Confidence 134678889 999998876664
No 187
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.90 E-value=0.4 Score=47.59 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCCccHHHHH-HHHHHHhhhc-----CCCCeEEEEEeCCCCCHHHHHHHHHHHhC-cC-------CchhhHHH------H
Q 045120 142 NGGIGKTTLA-KEFAKQARED-----KLFDRVVFSEVSQTSDIKKIQGDIAEKLG-LE-------LSEEAEYR------R 201 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~-------~~~~~~~~------~ 201 (374)
-.|+|||+|| -.+.|...+. ++-+.++++-+++..+-..-+.+.++.-+ .. ..+++... .
T Consensus 197 d~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~ 276 (574)
T PTZ00185 197 DRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYS 276 (574)
T ss_pred CCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHH
Confidence 6699999997 6667755321 23467899999988654333444444433 11 11111111 2
Q ss_pred HHHHHHHHhc-CCeEEEEEeCCCCc
Q 045120 202 ASRLYERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 202 ~~~l~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.-.+.+++++ ++..|||+||+...
T Consensus 277 a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 277 GVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHcCCCEEEEEcCchHH
Confidence 2345555542 58999999999754
No 188
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.27 Score=50.14 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=40.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT--SDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
..|+|||+||+.+++... +++.-.+.+|+.+.- ..+..+++.+- ....+.+.. ..-+|||
T Consensus 439 ~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~----------------~vfse~~~~-~PSiIvL 500 (952)
T KOG0735|consen 439 PKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN----------------NVFSEALWY-APSIIVL 500 (952)
T ss_pred CCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH----------------HHHHHHHhh-CCcEEEE
Confidence 789999999999999765 344444556655432 22333333222 233344445 6899999
Q ss_pred eCCC
Q 045120 220 ANIW 223 (374)
Q Consensus 220 Ddv~ 223 (374)
||+.
T Consensus 501 Ddld 504 (952)
T KOG0735|consen 501 DDLD 504 (952)
T ss_pred cchh
Confidence 9986
No 189
>PRK09183 transposase/IS protein; Provisional
Probab=93.87 E-value=3 Score=37.95 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+|||+||..+.+...
T Consensus 110 p~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 110 PSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 889999999999977543
No 190
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.60 E-value=0.21 Score=44.19 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=39.8
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKI 181 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 181 (374)
..++||-|+.++.+.-.-.++ |+|+||||=+..+.+..--..+=+.++=.+.|+.-.+.-+
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvV 95 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVV 95 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHH
Confidence 456899999888887766655 9999999977776664432222244555555555444333
No 191
>PRK04328 hypothetical protein; Provisional
Probab=93.57 E-value=0.42 Score=43.25 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=22.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
.+|+|||+||.++......+ -..++|++....
T Consensus 31 ~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 31 GPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 78999999998866543212 346788877654
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=3.7 Score=38.89 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=50.3
Q ss_pred CCeEEEEEeCCCCcc------ccccccCcCCCC-----Ccc-hhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCC
Q 045120 212 ENKILVILANIWKLL------DLETVKIPFRND-----SRD-NNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVEN 279 (374)
Q Consensus 212 ~kr~LlVlDdv~~~~------~~~~l~~~~~~~-----TR~-~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~ 279 (374)
+++=.+|+|++..-. -+..+..|-+.. |.+ ..+..+...--..+.+.+++.++..+.+....+. +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~---~ 183 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVTM---S 183 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccCC---C
Confidence 366788999887432 144444444433 322 3332221222236789999999998887654321 1
Q ss_pred cchHHHHHHHHHHccCCchHHHHHHh
Q 045120 280 CKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 280 ~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
.+.+..++..+ +|.|..+.-+.
T Consensus 184 ---~~~a~~~~~la-~G~~~~Al~l~ 205 (334)
T PRK07993 184 ---QDALLAALRLS-AGAPGAALALL 205 (334)
T ss_pred ---HHHHHHHHHHc-CCCHHHHHHHh
Confidence 12355778899 99997544443
No 193
>PRK06620 hypothetical protein; Validated
Probab=93.53 E-value=0.53 Score=41.54 Aligned_cols=48 Identities=8% Similarity=-0.182 Sum_probs=32.5
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCc
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGL 297 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~Gl 297 (374)
.+....++++++++.++-..++.+.+..... .--+++..-|++.+ .|-
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l-~l~~ev~~~L~~~~-~~d 182 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSV-TISRQIIDFLLVNL-PRE 182 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHc-cCC
Confidence 4455568999999999988888887752211 11146667788888 543
No 194
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.52 E-value=0.48 Score=46.52 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=52.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||+..+..+.... +=+.++++-++... ...++++++...=... ..+++.. ...-.+.+
T Consensus 151 ~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE 229 (461)
T TIGR01039 151 GAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAE 229 (461)
T ss_pred CCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 67999999999988765432 22477888887765 4566666665432111 1122211 13346777
Q ss_pred HHhc--CCeEEEEEeCCCCc
Q 045120 208 RLKN--ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~--~kr~LlVlDdv~~~ 225 (374)
+++. +++.||++||+...
T Consensus 230 yfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 230 YFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHhcCCeeEEEecchhHH
Confidence 7754 58999999999754
No 195
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.50 E-value=0.42 Score=46.81 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=53.4
Q ss_pred CCCccHHHHHHHHHHHhhhcC--CCC---------eEEEEEeCCCCCHHHHHHHHHHHhC-cC-------CchhhHH---
Q 045120 142 NGGIGKTTLAKEFAKQAREDK--LFD---------RVVFSEVSQTSDIKKIQGDIAEKLG-LE-------LSEEAEY--- 199 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~-------~~~~~~~--- 199 (374)
-.|+|||||+..+.+...... -.| .++++.++......+.+...+..-+ .. ..+.+..
T Consensus 149 gsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~ 228 (466)
T TIGR01040 149 AAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERI 228 (466)
T ss_pred CCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 569999999999988654210 022 6788888888666665665555544 21 1112111
Q ss_pred ---HHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 045120 200 ---RRASRLYERLK--NENKILVILANIWKL 225 (374)
Q Consensus 200 ---~~~~~l~~~L~--~~kr~LlVlDdv~~~ 225 (374)
...-.+.++++ .+++.||++||+...
T Consensus 229 ~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 229 ITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred HHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 12345777777 258999999999643
No 196
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.37 Score=46.13 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=47.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchh--hHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEE--AEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
-+|||||||..++..+..-+. .++||+-.. ++.++ +--++.++.+...- -.+-..+.+.+.+...+.-|+|+
T Consensus 101 dPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 101 DPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred CCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 669999999999998776443 677775433 33332 33456666543321 11223345555555558899999
Q ss_pred eCCCC
Q 045120 220 ANIWK 224 (374)
Q Consensus 220 Ddv~~ 224 (374)
|-+..
T Consensus 175 DSIQT 179 (456)
T COG1066 175 DSIQT 179 (456)
T ss_pred eccce
Confidence 99853
No 197
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.37 E-value=0.42 Score=47.09 Aligned_cols=84 Identities=27% Similarity=0.331 Sum_probs=52.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCC--eEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFD--RVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l 205 (374)
-.|+|||||+..+.+.....+.+. .++++-+++.. ...++.+.+...=... ..+++.. ...-.+
T Consensus 149 g~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~ti 228 (458)
T TIGR01041 149 GSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTA 228 (458)
T ss_pred CCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 669999999999988665432121 66788887765 4556666665432211 1112111 123457
Q ss_pred HHHHh--cCCeEEEEEeCCCCc
Q 045120 206 YERLK--NENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~--~~kr~LlVlDdv~~~ 225 (374)
.++++ .+++.||++||+...
T Consensus 229 AEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 229 AEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHccCCcEEEEEcChhHH
Confidence 78887 368999999999754
No 198
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.36 E-value=0.22 Score=42.26 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=21.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFS 170 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 170 (374)
+.|+||||+|+.+++... ..+...+++
T Consensus 15 ~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 15 LAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 789999999999998664 345555665
No 199
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.22 E-value=0.74 Score=45.08 Aligned_cols=17 Identities=35% Similarity=0.282 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||.|..+....
T Consensus 107 ~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 89999999987777653
No 200
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.19 E-value=0.49 Score=46.31 Aligned_cols=80 Identities=19% Similarity=0.327 Sum_probs=48.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+... .+.++++-++...+ ..++..+.+..-+.. ..+++.. ...-.+.+
T Consensus 166 ~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAE 241 (442)
T PRK08927 166 GSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAE 241 (442)
T ss_pred CCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 679999999999987543 35667777777654 345554444332211 1112111 12335666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.|+++||+-..
T Consensus 242 yfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 242 YFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHCCCcEEEEEeCcHHH
Confidence 6642 58999999999643
No 201
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.17 E-value=0.34 Score=47.25 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=49.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+... .+.++++-++...+ ..++.+.++..-+.. ..+++.. ..+-.+.+
T Consensus 170 ~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAE 245 (444)
T PRK08972 170 GSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAE 245 (444)
T ss_pred CCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 779999999999986322 36777777777654 455655554432211 1112211 12334666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 246 yfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 246 YFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHcCCCEEEEEcChHHH
Confidence 6642 58999999998643
No 202
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=1.5 Score=44.97 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=53.9
Q ss_pred ccccccHHHHHHHHHHhhcC---------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
+.-+|+++-+++|++++--. ++|+|||.+|+.|..-.- ..| +-++|+.-.|..+|--.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGH-- 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGH-- 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhccc--
Confidence 45679999999999987532 899999999999998543 333 23456655554443210
Q ss_pred HHhCcCCchhhHHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045120 187 EKLGLELSEEAEYRRASRLYERLKN--ENKILVILANIWK 224 (374)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~l~~~L~~--~kr~LlVlDdv~~ 224 (374)
...-...+-.++.+.|+. ..+=|+.||.|..
T Consensus 484 -------RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 -------RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred -------ceeeeccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 000011122345555542 2456788888763
No 203
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.02 E-value=0.3 Score=46.91 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=43.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchh--hHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEE--AEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
.+|+|||||+.++....... -..++|++.... ...+ ..-+..++...... ......+.+.+.+...+.-+||+
T Consensus 90 ~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVI 164 (372)
T cd01121 90 DPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEELKPDLVII 164 (372)
T ss_pred CCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEE
Confidence 78999999999998765422 246778765433 3332 22244555432211 00111233444444436778999
Q ss_pred eCCCC
Q 045120 220 ANIWK 224 (374)
Q Consensus 220 Ddv~~ 224 (374)
|.+..
T Consensus 165 DSIq~ 169 (372)
T cd01121 165 DSIQT 169 (372)
T ss_pred cchHH
Confidence 99853
No 204
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.01 E-value=0.07 Score=42.11 Aligned_cols=17 Identities=53% Similarity=0.690 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+.+..
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998854
No 205
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.98 E-value=0.38 Score=50.35 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch------hhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE------EAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~L~~~kr~ 215 (374)
..|+||||||.++....... =..++|++....++. ..+++++..... .+.+.....+...+..++--
T Consensus 68 ~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~ 140 (790)
T PRK09519 68 PESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALD 140 (790)
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCe
Confidence 88999999998866543322 256799988877774 367777765321 23344555566666655677
Q ss_pred EEEEeCCC
Q 045120 216 LVILANIW 223 (374)
Q Consensus 216 LlVlDdv~ 223 (374)
|||+|-+.
T Consensus 141 LVVIDSI~ 148 (790)
T PRK09519 141 IVVIDSVA 148 (790)
T ss_pred EEEEcchh
Confidence 99999986
No 206
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=92.83 E-value=0.44 Score=47.13 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC--------------CchhhHH------H
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE--------------LSEEAEY------R 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~--------------~~~~~~~------~ 200 (374)
-.|+|||||+..+..+... .+=+.++++-++... ...++...++..-... ..+++.. .
T Consensus 169 g~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~ 247 (494)
T CHL00060 169 GAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL 247 (494)
T ss_pred CCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHH
Confidence 6699999999988876321 112788999888875 4566666666511100 1111211 2
Q ss_pred HHHHHHHHHhc-CC-eEEEEEeCCCCc
Q 045120 201 RASRLYERLKN-EN-KILVILANIWKL 225 (374)
Q Consensus 201 ~~~~l~~~L~~-~k-r~LlVlDdv~~~ 225 (374)
..-.+.++++. ++ +.||++||+...
T Consensus 248 ~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 248 TALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 33467788864 34 999999999754
No 207
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=92.80 E-value=0.5 Score=46.65 Aligned_cols=83 Identities=29% Similarity=0.367 Sum_probs=53.3
Q ss_pred CCCccHHHHHHHHHHHhhhc---CCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHH
Q 045120 142 NGGIGKTTLAKEFAKQARED---KLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~ 204 (374)
-.|+|||||+..+.+..... ..| .++++-+++.. ...++++.+...=... ..+++.. ...-.
T Consensus 151 g~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~t 229 (460)
T PRK04196 151 GSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALT 229 (460)
T ss_pred CCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56999999999998876532 111 67888887765 4566666665542211 1112211 13346
Q ss_pred HHHHHh--cCCeEEEEEeCCCCc
Q 045120 205 LYERLK--NENKILVILANIWKL 225 (374)
Q Consensus 205 l~~~L~--~~kr~LlVlDdv~~~ 225 (374)
+.++++ .+++.||++||+...
T Consensus 230 iAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 230 AAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHhcCCcEEEEEcChHHH
Confidence 778877 368999999999754
No 208
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.78 E-value=0.87 Score=40.67 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=25.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
..|+||||||.++...... .. ..+++++ ...+..++++.+ .+++
T Consensus 32 ~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 32 DESTGKSILSQRLAYGFLQ-NG-YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCCCCHHHHHHHHHHHHHh-CC-CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 7899999998666554321 22 3456666 333456666665 3444
No 209
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.45 Score=49.02 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=55.8
Q ss_pred ccccccccccHHHHHHHHHHhhcC---------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 118 NKVYEAFESRVSNLKSTQNALTNA---------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~~~---------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
...-.++=|.++.+.+|.+-+.-+ ++|.|||-||++|...... -|++|-..
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP- 739 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP- 739 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH-
Confidence 333455778888888888876542 8999999999999986553 35655433
Q ss_pred CHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 177 DIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
+++.. .+| ++ ++..+.+++.-+.-+.|.|.||.+.+.
T Consensus 740 ---ELLNM---YVG-----qS-E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ---ELLNM---YVG-----QS-EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ---HHHHH---Hhc-----ch-HHHHHHHHHHhhccCCeEEEecccccc
Confidence 11111 111 11 223345555555558999999998753
No 210
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.61 E-value=0.16 Score=52.06 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=33.3
Q ss_pred ccccccccccHHHHHHHHHHhhcC--------------CCCccHHHHHHHHHHHh
Q 045120 118 NKVYEAFESRVSNLKSTQNALTNA--------------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~~~--------------~gGiGKTtLA~~v~~~~ 158 (374)
|....+++|-+..++++..+|... +.|+||||+++.+.+..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567999999999999888642 88999999999998754
No 211
>PRK06851 hypothetical protein; Provisional
Probab=92.61 E-value=1.8 Score=41.46 Aligned_cols=33 Identities=36% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
..|+|||||++.++.....+ .++..++-|-+.+
T Consensus 222 ~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 222 RPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred CCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 88999999999999977544 4666666554444
No 212
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.55 E-value=0.52 Score=46.09 Aligned_cols=80 Identities=18% Similarity=0.366 Sum_probs=48.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHHH------HHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEYR------RASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~l~~ 207 (374)
..|+|||||.+.+++... -+.++++-++... ...++....+..-+.. ..+++... ..-.+.+
T Consensus 170 ~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 245 (439)
T PRK06936 170 AAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAE 245 (439)
T ss_pred CCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 679999999999998543 3678888887765 3444444433321111 11122211 2234666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 246 yfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 246 YFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 6642 58999999999644
No 213
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.69 Score=41.73 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=50.9
Q ss_pred cccccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 117 SNKVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 117 ~~~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
|-..+..+-|=.+.+++|.+-+..+ ++|.|||-+|++|.|... ..| +-|-.
T Consensus 172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acf-----irvig 244 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACF-----IRVIG 244 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceE-----Eeehh
Confidence 3344455667777777776655433 889999999999999433 334 32211
Q ss_pred CCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045120 175 TSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 175 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
.++++..-. ....+...|++.-+.+|-|+|.+|.+.
T Consensus 245 --------selvqkyvg-----egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 --------SELVQKYVG-----EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred --------HHHHHHHhh-----hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 122222100 112234455555566678999999875
No 214
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.45 E-value=0.36 Score=50.86 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=52.3
Q ss_pred cccccHHHHHHHHHHhhc----------C--------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTN----------A--------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~----------~--------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
.++|-+..++.|.+.+.. + +.|+|||+||+.+.... +...+.++++.-.+.. .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----c
Confidence 477888888888777652 1 78999999999998744 2234555554432211 1
Q ss_pred HHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 185 IAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 185 i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
+...++.+.....- +....+.+.++.....+|+||++...
T Consensus 526 ~~~lig~~~gyvg~-~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYVGF-EQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCccc-chhhHHHHHHHhCCCeEEEEechhhc
Confidence 12222222111000 01123444554434569999999743
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.43 E-value=0.44 Score=42.40 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=53.1
Q ss_pred cccccccHHHHHHHHHHh---hcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNAL---TNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L---~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
-..++|.|...+.+++-- ..+ ..|+||++|++++.+...-+ .-. -|.|++.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~------------ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE------------ 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH------------
Confidence 445889888877776532 222 77999999999999966522 222 3333321
Q ss_pred HhCcCCchhhHHHHHHHHHHHHhc-CCeEEEEEeCCCCc---cccccccCcC
Q 045120 188 KLGLELSEEAEYRRASRLYERLKN-ENKILVILANIWKL---LDLETVKIPF 235 (374)
Q Consensus 188 ~l~~~~~~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~---~~~~~l~~~~ 235 (374)
+-.....|.+.|+. ..||.|..||+.=+ .....+...+
T Consensus 123 ----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 123 ----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred ----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 11112344555543 37999999999733 2355554444
No 216
>PRK06696 uridine kinase; Validated
Probab=92.37 E-value=0.16 Score=45.20 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHhhcC------------CCCccHHHHHHHHHHHhh
Q 045120 126 SRVSNLKSTQNALTNA------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 126 Gr~~~~~~i~~~L~~~------------~gGiGKTtLA~~v~~~~~ 159 (374)
.|.+-+++|.+.+... .+|+||||||+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3556666676666431 789999999999988654
No 217
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.21 E-value=0.6 Score=43.10 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=38.7
Q ss_pred CCCccHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcCCch-hhHHHHHHHHHHHHhcCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQARED-KLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLELSE-EAEYRRASRLYERLKNENKILV 217 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~~~kr~Ll 217 (374)
+.|+||||++..+......+ +.+ .+..|+.. .+. ....+......++.+... .+..++...+. .+. ..=+|
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~--~~d~v 276 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR--DKDLI 276 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc--CCCEE
Confidence 88999999998887765433 222 34555533 222 223333444444544322 12233332332 333 24578
Q ss_pred EEeCC
Q 045120 218 ILANI 222 (374)
Q Consensus 218 VlDdv 222 (374)
++|..
T Consensus 277 liDt~ 281 (282)
T TIGR03499 277 LIDTA 281 (282)
T ss_pred EEeCC
Confidence 88853
No 218
>PRK08149 ATP synthase SpaL; Validated
Probab=92.19 E-value=0.63 Score=45.41 Aligned_cols=80 Identities=14% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~l~~ 207 (374)
..|+|||||+..+.+... -+.+++..+.... ++..+........... ..+++. ...+..+.+
T Consensus 159 ~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE 234 (428)
T PRK08149 159 SAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAE 234 (428)
T ss_pred CCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHH
Confidence 779999999999987433 3455555565543 5566666666543221 111211 123345566
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
+++. +|+.||++||+-..
T Consensus 235 ~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 235 YFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHcCCCEEEEccchHHH
Confidence 6642 58999999999644
No 219
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.17 E-value=0.28 Score=50.36 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=53.0
Q ss_pred cccccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCc
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGL 191 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 191 (374)
.....++|.+..++.|...+... ..|+||||+|+.+.+..- ..+|+..+|..- ...+...+++.++..++.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 44567999999999888877765 889999999999987542 234577778654 334677778888777764
Q ss_pred C
Q 045120 192 E 192 (374)
Q Consensus 192 ~ 192 (374)
.
T Consensus 106 ~ 106 (637)
T PRK13765 106 Q 106 (637)
T ss_pred H
Confidence 3
No 220
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.16 E-value=0.77 Score=38.78 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|+||||++..+.....
T Consensus 8 ~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 8 LQGVGKTTTAAKLALYLK 25 (173)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 789999999999887654
No 221
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.04 E-value=0.55 Score=42.30 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=31.4
Q ss_pred cccccccHHHHHH---HHHHhhcC---------------CCCccHHHHHHHHHHHhhh
Q 045120 121 YEAFESRVSNLKS---TQNALTNA---------------NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 121 ~~~~vGr~~~~~~---i~~~L~~~---------------~gGiGKTtLA~~v~~~~~~ 160 (374)
...++|-+..+.+ |++.|.++ +.|.|||-+|+++.|..++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 3458898877654 67777765 8999999999999996653
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.03 E-value=1.1 Score=38.99 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcCCch----hhHHHHHHHHHHHHhcCCeEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLELSE----EAEYRRASRLYERLKNENKIL 216 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~L~~~kr~L 216 (374)
+.|+||||.+-.+......+ =..+..++.... ....+-++..++.++.+... .++.+......+.+..++.=+
T Consensus 9 ptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~ 86 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDL 86 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSE
T ss_pred CCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCE
Confidence 78999999777776655533 234666765322 34556677888888876321 234444444344444423457
Q ss_pred EEEeCC
Q 045120 217 VILANI 222 (374)
Q Consensus 217 lVlDdv 222 (374)
|++|-.
T Consensus 87 vlIDT~ 92 (196)
T PF00448_consen 87 VLIDTA 92 (196)
T ss_dssp EEEEE-
T ss_pred EEEecC
Confidence 888865
No 223
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.03 E-value=0.57 Score=39.68 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=43.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcC-CeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNE-NKILVILA 220 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~-kr~LlVlD 220 (374)
..|+|||++|.++... ....++++.-...++. ++.+.|...-..........+....|.+.+... +.-.+++|
T Consensus 7 ~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLID 80 (169)
T cd00544 7 GARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLID 80 (169)
T ss_pred CCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEE
Confidence 5699999999998753 2245677777777764 355555443322222222223333455555331 23479999
Q ss_pred CCC
Q 045120 221 NIW 223 (374)
Q Consensus 221 dv~ 223 (374)
.+.
T Consensus 81 clt 83 (169)
T cd00544 81 CLT 83 (169)
T ss_pred cHh
Confidence 874
No 224
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.95 E-value=0.85 Score=41.68 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=46.0
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHHH------HHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDRV-VFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEYR------RASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~l 205 (374)
..|+|||+|| ..+.+.. +-+.+ +++-++... ...++.+++...-... ..+++... ..-.+
T Consensus 77 ~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 77 DRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred CCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 5579999996 5666532 23555 777777765 4556666655432111 11121211 12345
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.+++.. ++..||++||+...
T Consensus 153 AE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 153 GEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHCCCCEEEEEcChHHH
Confidence 555543 48999999998643
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.90 E-value=0.62 Score=44.00 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=21.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV 172 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 172 (374)
..|+|||.||..+.+...-++ -.++|+++
T Consensus 191 ~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 191 NTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 779999999999999764332 25666654
No 226
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.89 E-value=0.14 Score=51.50 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=31.4
Q ss_pred ccccccHHHHHHHHHHhhcC---------------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTNA---------------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------------~gGiGKTtLA~~v~~~~ 158 (374)
..++|.++.+++|++.|... +.|+||||||+.+.+-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 35889999999999998432 88999999999998844
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.86 E-value=1.1 Score=38.24 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
.+|+|||+||.++.......+ ..++|++... +...+.+.
T Consensus 7 ~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 7 GPGTGKTTFALQFLYAGLARG--EPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CcEEEEECCC--CHHHHHHH
Confidence 689999999998866543221 3567876544 34444433
No 228
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.84 E-value=1.3 Score=39.50 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=45.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc---------------------hhhHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS---------------------EEAEYR 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------------~~~~~~ 200 (374)
..|+||||||.++....... =..++|++.... +.++.+.+ .+++.... ..+...
T Consensus 33 ~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ 107 (234)
T PRK06067 33 DHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLANK 107 (234)
T ss_pred CCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccCcchHHH
Confidence 88999999999985543212 246788887654 34554443 33332111 112244
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCC
Q 045120 201 RASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 201 ~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
....+.+.+...+.-++|+|.+.
T Consensus 108 ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 108 LLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEecHH
Confidence 55666666654345688899764
No 229
>PRK10536 hypothetical protein; Provisional
Probab=91.84 E-value=0.39 Score=43.43 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=35.2
Q ss_pred cccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEE
Q 045120 121 YEAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVF 169 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~w 169 (374)
...+.+|......++.+|.+. ..|+|||+||..+..+.-..+.|+..+-
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 344667888888888888766 8899999999998875432344544433
No 230
>PRK10867 signal recognition particle protein; Provisional
Probab=91.82 E-value=1.1 Score=43.81 Aligned_cols=18 Identities=44% Similarity=0.468 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+||||.+..+.....
T Consensus 108 ~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 899999998777766443
No 231
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.62 E-value=1 Score=42.02 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHHhhc-----------CCCCccHHHHHHHHHHHhh
Q 045120 124 FESRVSNLKSTQNALTN-----------ANGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~-----------~~gGiGKTtLA~~v~~~~~ 159 (374)
++|-+....++..+... ++.|+||||+|..+.+..-
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 34445555555555542 2779999999999988654
No 232
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.58 E-value=0.71 Score=44.87 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=37.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
++|+||||++..+.........+ .+-+...+.+. ....+...++.++.+..... . ...+.+.+.....=+||+
T Consensus 231 ptGvGKTTtaaKLA~~~~~~~G~--~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~--~-~~~l~~~l~~~~~D~VLI 305 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGK--SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK--D-IKKFKETLARDGSELILI 305 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--eEEEecccchhhhHHHHHHHHHHhcCCCeeehH--H-HHHHHHHHHhCCCCEEEE
Confidence 89999999999988754322222 23222233332 23334444455554432211 1 223444444323456888
Q ss_pred eC
Q 045120 220 AN 221 (374)
Q Consensus 220 Dd 221 (374)
|-
T Consensus 306 DT 307 (432)
T PRK12724 306 DT 307 (432)
T ss_pred eC
Confidence 84
No 233
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=91.58 E-value=0.95 Score=44.91 Aligned_cols=80 Identities=14% Similarity=0.266 Sum_probs=49.3
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHHH------HHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDR-VVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEYR------RASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~l 205 (374)
..|+|||||| ..+.|.. .-|. ++++-+++.. ...++.+.+...=... ..+.+... ..-.+
T Consensus 170 ~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~ai 245 (497)
T TIGR03324 170 DRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSI 245 (497)
T ss_pred CCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4499999996 5777743 2465 7889898875 4556666665542221 11111111 22346
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.++++. +++.|||+||+...
T Consensus 246 AEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 246 GEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHhCCCCEEEEEcChhHH
Confidence 666643 58999999999754
No 234
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.46 E-value=0.72 Score=46.45 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=44.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEE-EEEeCCCCC-HHHHHHHHHHHhCcCCchhh------HHHHHHHHHHHHh-cC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVV-FSEVSQTSD-IKKIQGDIAEKLGLELSEEA------EYRRASRLYERLK-NE 212 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~------~~~~~~~l~~~L~-~~ 212 (374)
..|+|||||++.|.+.... .+-++.+ .+-|...+. +.++.+.+-..+-....+.+ .....-.+.++|. .+
T Consensus 424 pp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G 502 (672)
T PRK12678 424 PPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELG 502 (672)
T ss_pred CCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999985532 2334444 445555543 33333332111111111111 1223334555553 35
Q ss_pred CeEEEEEeCCCCc
Q 045120 213 NKILVILANIWKL 225 (374)
Q Consensus 213 kr~LlVlDdv~~~ 225 (374)
+.+||++|++...
T Consensus 503 ~dVlillDSlTR~ 515 (672)
T PRK12678 503 KDVVVLLDSITRL 515 (672)
T ss_pred CCEEEEEeCchHH
Confidence 8999999998643
No 235
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.39 E-value=0.49 Score=48.56 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=46.5
Q ss_pred cccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCc
Q 045120 121 YEAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGL 191 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 191 (374)
...++|.+..++.+...+... +.|+||||||+.+.+.... ..|...+++.-+ ..+...++..++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPD-EELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCc-hhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 456889998888888777665 8899999999999985432 233333333222 23455667777777764
No 236
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.34 E-value=0.58 Score=39.84 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998744
No 237
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.34 E-value=0.15 Score=40.48 Aligned_cols=17 Identities=53% Similarity=0.649 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||||+.+....
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 67999999999998863
No 238
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.34 E-value=0.95 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=17.8
Q ss_pred CceecCCCCHHHHHHHHHHhcC
Q 045120 253 DNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
..+.++.-+.++-.++|..+..
T Consensus 385 ~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 385 EIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred eEEEeCCcCHHHHHHHHHHHHh
Confidence 4677888888999999988775
No 239
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.31 E-value=0.51 Score=44.58 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=39.1
Q ss_pred ccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 045120 124 FESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQG 183 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 183 (374)
++|++..+..+...+..+ ..|+|||+||+++..... . ....|.........++.-
T Consensus 26 ~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~--~---~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 26 VVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALG--L---PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhC--C---CeEEEecCCCCCHHHhcC
Confidence 788888888877666654 889999999999998544 2 235555566666555543
No 240
>PRK04296 thymidine kinase; Provisional
Probab=91.15 E-value=0.29 Score=42.31 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=40.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch---hhHHHHHHHHHHHHhcCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE---EAEYRRASRLYERLKNENKILVI 218 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~L~~~kr~LlV 218 (374)
..|.||||+|..+....... -..++.+. ..++.......++++++..... ....+....+.+ ..++.-+||
T Consensus 10 ~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~dvvi 83 (190)
T PRK04296 10 AMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKIDCVL 83 (190)
T ss_pred CCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCCEEE
Confidence 45999999998888765432 22333331 1122222234456666543322 223344444444 332445899
Q ss_pred EeCCC
Q 045120 219 LANIW 223 (374)
Q Consensus 219 lDdv~ 223 (374)
+|.+.
T Consensus 84 IDEaq 88 (190)
T PRK04296 84 IDEAQ 88 (190)
T ss_pred EEccc
Confidence 99983
No 241
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.09 E-value=1.5 Score=40.01 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
.+|+||||||.++....... =..++|++...
T Consensus 44 ~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 44 VSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 88999999999875543322 24678888764
No 242
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.03 E-value=1.6 Score=41.39 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHh----CcC----------CchhhHHH------
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKL----GLE----------LSEEAEYR------ 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l----~~~----------~~~~~~~~------ 200 (374)
..|+|||+|++++.+... -+.++++-++... .+.+++.++-+.- +.. ..+++...
T Consensus 165 ~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~y 240 (369)
T cd01134 165 PFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIY 240 (369)
T ss_pred CCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHH
Confidence 679999999999988543 4678889888765 4555665543311 111 11122111
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCC
Q 045120 201 RASRLYERLKN-ENKILVILANIWK 224 (374)
Q Consensus 201 ~~~~l~~~L~~-~kr~LlVlDdv~~ 224 (374)
..-.+.+++++ ++..|+++|++..
T Consensus 241 ta~tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 241 TGITIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChhH
Confidence 22345566642 5899999999853
No 243
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.00 E-value=0.28 Score=40.84 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRV 167 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~ 167 (374)
|+|+|||||++.+.+..+..+ |...
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g-~kvg 37 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKG-YKVG 37 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcC-ceee
Confidence 899999999999998776443 6544
No 244
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.99 E-value=1.6 Score=43.67 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch----------------hhHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE----------------EAEYRRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------~~~~~~~~~l 205 (374)
..|+|||||+.++......+ =..+++++... +..++... ++.++..... .+.++.+..+
T Consensus 271 ~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i 345 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQII 345 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHH-HHHcCCChHHHhhCCcEEEEEcccccCChHHHHHHH
Confidence 88999999999987755422 24566765443 44455444 3455432211 1235566777
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 045120 206 YERLKNENKILVILANIW 223 (374)
Q Consensus 206 ~~~L~~~kr~LlVlDdv~ 223 (374)
.+.+...+.-.+|+|.+.
T Consensus 346 ~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 346 KSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHHcCCCEEEEcCHH
Confidence 777765456688999874
No 245
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=90.93 E-value=1.7 Score=42.30 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=52.8
Q ss_pred ccccHHHHHHHHHHhh---cC-------CC--CccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-------CHHHHHHH
Q 045120 124 FESRVSNLKSTQNALT---NA-------NG--GIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-------DIKKIQGD 184 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~---~~-------~g--GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~~~~~ 184 (374)
.|||+.+++.|.+-|. .+ .| |.|||.+.+.+.+...-+ .| .+..|.+|..- ....+.++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~-~f-vvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEK-GF-VVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHc-CC-EEEEEecCCCcccccccccHHHHHHH
Confidence 6899999999988875 33 44 999999999998876543 35 56777777642 56789999
Q ss_pred HHHHhCcCCc
Q 045120 185 IAEKLGLELS 194 (374)
Q Consensus 185 i~~~l~~~~~ 194 (374)
|++.+.....
T Consensus 105 l~~nL~t~~~ 114 (416)
T PF10923_consen 105 LMRNLSTKTK 114 (416)
T ss_pred HHHhcCCCCC
Confidence 9999986654
No 246
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.89 E-value=0.72 Score=49.43 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.1
Q ss_pred ccccccHHHHHHHHHHhhc------------C------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN------------A------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~------------~------~gGiGKTtLA~~v~~~~ 158 (374)
..++|.+..++.|.+.+.. + +.|+|||+||+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999998888777642 1 78999999999998743
No 247
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.84 E-value=2 Score=39.16 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
.+|+|||||+.++..+..... =..++|+++.. +..++...+...
T Consensus 38 ~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 38 GTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHHHH
Confidence 789999999999877553221 23577887655 344555555443
No 248
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.79 E-value=1.9 Score=38.48 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=27.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
.+|+|||+++.++..+...... ..++|++... +..++...++.
T Consensus 21 ~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 21 RPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHH
Confidence 7899999999988776554322 2456665444 44555555543
No 249
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=1.4 Score=44.71 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=29.7
Q ss_pred cccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhh
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~ 159 (374)
..-..+-|.|+-+.+|.+.+.-+ ++|+|||++|+.+.+...
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc
Confidence 33344556777777776655433 899999999999999655
No 250
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.77 E-value=0.86 Score=44.37 Aligned_cols=80 Identities=23% Similarity=0.411 Sum_probs=46.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+... .+..+++.++... .+.++.......=... ..+++.. ...-.+.+
T Consensus 145 ~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAE 220 (411)
T TIGR03496 145 GSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAE 220 (411)
T ss_pred CCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 779999999998887433 3455556666654 3444555444331111 1112111 12334566
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
+++. +++.||++||+...
T Consensus 221 yfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 221 YFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHCCCCEEEEEeChHHH
Confidence 6642 58999999998643
No 251
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.72 E-value=0.74 Score=49.37 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=53.5
Q ss_pred ccccccHHHHHHHHHHhhc-----------C-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTN-----------A-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQG 183 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~-----------~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 183 (374)
..++|.+..++.+.+.+.. . +.|+|||+||+.+..... ..-...+.++++...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccchH--
Confidence 4588999999998888753 1 889999999999987432 11223445555543221111
Q ss_pred HHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 184 DIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 184 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
...++.+..-..-+ ....+.+.++.....+|+||++...
T Consensus 641 --~~l~g~~~g~~g~~-~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 --ARLIGAPPGYVGYE-EGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHhcCCCCCccCcc-cccHHHHHHHcCCCcEEEEeccccC
Confidence 11122221100000 0123444444424459999999754
No 252
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.64 E-value=0.74 Score=42.00 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHH
Q 045120 130 NLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQ 182 (374)
Q Consensus 130 ~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 182 (374)
-++++..++..+ ..|+|||+||+.+.+.. . . ..+.++.+...+..+++
T Consensus 10 l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l--g--~-~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR--D--R-PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh--C--C-CEEEEeCCccCCHHHHh
Confidence 345555555544 88999999999998722 1 1 23455555555544443
No 253
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.64 E-value=1 Score=43.02 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=16.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+|||.+|+.+++...
T Consensus 156 PPGcGKTllAraiA~elg 173 (413)
T PLN00020 156 GKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 789999999999999665
No 254
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=90.55 E-value=0.4 Score=41.90 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEEE
Q 045120 127 RVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVFS 170 (374)
Q Consensus 127 r~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 170 (374)
+..+-...++.|... ++|+|||.||.+..-+.-..+.|+..+++
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 334445556666543 89999999999988776666889888877
No 255
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=1.3 Score=44.54 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=61.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
++|+|||-||++|.|... -.| ++|... +++.. .+| ++ +.....++..-+..-.|.|.||.
T Consensus 553 PPGCGKTLlAKAVANEag--~NF-----isVKGP----ELlNk---YVG-----ES-ErAVR~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVANEAG--ANF-----ISVKGP----ELLNK---YVG-----ES-ERAVRQVFQRARASAPCVIFFDE 612 (802)
T ss_pred CCCccHHHHHHHHhhhcc--Cce-----EeecCH----HHHHH---Hhh-----hH-HHHHHHHHHHhhcCCCeEEEecc
Confidence 889999999999999655 334 544432 11111 111 11 22234455555555799999999
Q ss_pred CCCcc-------------ccccccCcCCCC-----------CcchhHhhh---hcC-CCCceecCCCCHHHHHHHHHHhc
Q 045120 222 IWKLL-------------DLETVKIPFRND-----------SRDNNVVLL---SMG-SKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 222 v~~~~-------------~~~~l~~~~~~~-----------TR~~~va~~---~~~-~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
+.... ...+|..-+... |-+.++... ..| -....-++.-+.+|-.++++...
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 86320 122222222111 444333211 111 12355667778889999999888
Q ss_pred C
Q 045120 274 G 274 (374)
Q Consensus 274 ~ 274 (374)
.
T Consensus 693 k 693 (802)
T KOG0733|consen 693 K 693 (802)
T ss_pred c
Confidence 6
No 256
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=90.48 E-value=1.1 Score=44.19 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHHH------HHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDRV-VFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEYR------RASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~l 205 (374)
..|+|||||| ..+.|.. .-|.+ +++-+++.. ...++.+.+...=... ..+.+... ..-.+
T Consensus 149 ~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~ai 224 (485)
T CHL00059 149 DRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 224 (485)
T ss_pred CCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhH
Confidence 6699999996 4465532 24555 888888765 4556666555432211 11111111 12345
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.++++. +++.|||+||+...
T Consensus 225 AEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 225 AEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHcCCCEEEEEcChhHH
Confidence 566653 48999999999754
No 257
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.37 E-value=0.73 Score=40.86 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=42.8
Q ss_pred CCCccHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCC----------------c-----hhhHH
Q 045120 142 NGGIGKTTLAKEFAKQARED-KLFDRVVFSEVSQTSDIKKIQGDIAEKLGLEL----------------S-----EEAEY 199 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------------~-----~~~~~ 199 (374)
..|+|||+|+.++......+ + ..++|++...++ .++.+.+- .++... . ..+..
T Consensus 27 ~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~ 101 (226)
T PF06745_consen 27 PPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGWSPNDLE 101 (226)
T ss_dssp STTSSHHHHHHHHHHHHHHHHT----EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-TSCCHH
T ss_pred CCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccccccccCHH
Confidence 88999999998865433222 1 356788765543 44444432 333210 0 12345
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCC
Q 045120 200 RRASRLYERLKNENKILVILANI 222 (374)
Q Consensus 200 ~~~~~l~~~L~~~kr~LlVlDdv 222 (374)
.....+.+.++..+...+|+|.+
T Consensus 102 ~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 102 ELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp HHHHHHHHHHHHHTSSEEEEETH
T ss_pred HHHHHHHHHHHhcCCCEEEEECH
Confidence 56666777666535578888875
No 258
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=90.33 E-value=1.3 Score=43.59 Aligned_cols=80 Identities=18% Similarity=0.364 Sum_probs=46.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~l~~ 207 (374)
..|+|||||++.+.+.. ..+.+++..++... +...+...+...-+.. ..+.+. ...+-.+.+
T Consensus 176 ~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAE 251 (451)
T PRK05688 176 GTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAE 251 (451)
T ss_pred CCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 67999999999987632 23455555555443 4555555554443221 111111 112335666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 252 yfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 252 YFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHCCCCEEEEecchhHH
Confidence 6643 58999999999654
No 259
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=90.30 E-value=1.2 Score=44.54 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=48.8
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDRV-VFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l 205 (374)
..|+|||||| ..+.+.. ..|.+ +++-+++.. ...++.+.+...=... ..+++.. ...-.+
T Consensus 169 ~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~ai 244 (501)
T TIGR00962 169 DRQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTM 244 (501)
T ss_pred CCCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4499999996 5666643 35664 888888865 4566666665532211 1111111 123355
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.++++. +++.|||+||+...
T Consensus 245 AEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 245 AEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHcCCCEEEEecchHHH
Confidence 666653 48999999999754
No 260
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.29 E-value=14 Score=38.88 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||++..+.....
T Consensus 193 pnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CCCCcHHHHHHHHHhhHH
Confidence 889999998888876553
No 261
>PRK05922 type III secretion system ATPase; Validated
Probab=90.26 E-value=1.5 Score=42.99 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=46.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~l~~ 207 (374)
..|+|||||.+.+.+... .+...++.++... .....+.+....+... ..+++. ....-.+.+
T Consensus 165 ~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAE 240 (434)
T PRK05922 165 EPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAE 240 (434)
T ss_pred CCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 569999999999987432 3445555555433 3345555544433221 111111 112345666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 241 yfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 241 YFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 6643 58999999999754
No 262
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.22 E-value=1.5 Score=42.08 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=52.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcC-------CchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLE-------LSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~l~~ 207 (374)
-.|+|||||.-++.+..+ +|..+-.-++.. -.+.++.++.+..-+.. ..+.+. ...+..+.+
T Consensus 171 gsGVGKStLLgMiar~t~----aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAE 246 (441)
T COG1157 171 GSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAE 246 (441)
T ss_pred cCCCcHHHHHHHHhcccc----CCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 669999999999998443 777666656654 35666766666655433 112221 224557888
Q ss_pred HHhc-CCeEEEEEeCCC
Q 045120 208 RLKN-ENKILVILANIW 223 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~ 223 (374)
+.++ +|+.||++|-+-
T Consensus 247 yFRDqG~~VLL~mDSlT 263 (441)
T COG1157 247 YFRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHHhCCCeEEEEeecHH
Confidence 8874 599999999884
No 263
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=2.5 Score=37.97 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=31.1
Q ss_pred cccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhh
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~ 159 (374)
..+..+-|.+-.+.+|.+.+.-+ ++|+|||-||++|.|+..
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 33445668887788777765433 889999999999999665
No 264
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.18 E-value=0.61 Score=39.90 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+||||+|+.+.+..
T Consensus 8 ~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 8 PPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999874
No 265
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.18 E-value=0.76 Score=49.12 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=52.4
Q ss_pred ccccccHHHHHHHHHHhhcC------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQG 183 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 183 (374)
..++|-+..++.|.+.+... +.|+|||+||+.+.+..- +.-...+-++++.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccH--
Confidence 45889999998887776521 789999999999987432 11123344444433222211
Q ss_pred HHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 184 DIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 184 ~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
...++.+..-..- +....|.+.++.....+++||++...
T Consensus 585 --~~l~g~~~gyvg~-~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPGYVGY-NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCcccCc-CccchHHHHHHhCCCeEEEECChhhC
Confidence 1112221100000 00123455555523468899999743
No 266
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.13 E-value=1.2 Score=40.13 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||+|+.+.....
T Consensus 7 ~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 789999999999987654
No 267
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=90.06 E-value=1.5 Score=42.97 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=43.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcC------CchhhH------HHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLE------LSEEAE------YRRASRLYERL 209 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------~~~~~~------~~~~~~l~~~L 209 (374)
..|+|||||++.+..... ....+++..-.+.-++..+....+...... ..+++. ....-.+.+++
T Consensus 173 ~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyf 249 (450)
T PRK06002 173 GSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYF 249 (450)
T ss_pred CCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 679999999998876332 122333333223345555444443332110 111111 11233455666
Q ss_pred hc-CCeEEEEEeCCCCc
Q 045120 210 KN-ENKILVILANIWKL 225 (374)
Q Consensus 210 ~~-~kr~LlVlDdv~~~ 225 (374)
+. ++..||++||+...
T Consensus 250 rd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 250 RDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHcCCCEEEeccchHHH
Confidence 43 58999999998643
No 268
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.04 E-value=1.2 Score=44.08 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchh--hHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEE--AEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
.+|+|||||+.++.......+ ..++|++.... ...+.. -+..++...+.. -.+.....+.+.+...+.-++|+
T Consensus 102 ~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVI 176 (454)
T TIGR00416 102 DPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEEENPQACVI 176 (454)
T ss_pred CCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEE
Confidence 779999999999876543221 35778765433 333222 233444322110 00011234444454435678999
Q ss_pred eCCCC
Q 045120 220 ANIWK 224 (374)
Q Consensus 220 Ddv~~ 224 (374)
|.+..
T Consensus 177 DSIq~ 181 (454)
T TIGR00416 177 DSIQT 181 (454)
T ss_pred ecchh
Confidence 98853
No 269
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=90.03 E-value=0.68 Score=44.90 Aligned_cols=37 Identities=35% Similarity=0.392 Sum_probs=26.6
Q ss_pred cccccHHHHHHHHHHhhc-----------------------CCCCccHHHHHHHHHHHhh
Q 045120 123 AFESRVSNLKSTQNALTN-----------------------ANGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~-----------------------~~gGiGKTtLA~~v~~~~~ 159 (374)
.++|.++.++.+.-.+.. ++.|+|||+||+.+.....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 466777777666544442 1789999999999988654
No 270
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=6.3 Score=38.39 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|.|||++..+++|...
T Consensus 243 PPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYLN 260 (457)
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 999999999999999654
No 271
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=89.87 E-value=1.1 Score=43.84 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~l~~ 207 (374)
..|+|||||++.+.+.. +.+..+++.++... .+.+++.+....=... ..+.+. ....-.+.+
T Consensus 163 ~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAE 238 (433)
T PRK07594 163 APGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE 238 (433)
T ss_pred CCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 77999999999998743 25556666666543 4445555543211100 111111 112335666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 239 yfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 239 FFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHCCCcEEEEEeCHHHH
Confidence 6653 58999999999644
No 272
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.85 E-value=0.87 Score=44.97 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=42.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchh--hHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEE--AEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
.+|+|||||+.++....... -..++|++.... ...+.. -++.++.....- ..+.....+.+.+...+.-+||+
T Consensus 88 ~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVI 162 (446)
T PRK11823 88 DPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVI 162 (446)
T ss_pred CCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEE
Confidence 78999999999988765422 235678775443 333322 245555322110 00011233444444335668999
Q ss_pred eCCC
Q 045120 220 ANIW 223 (374)
Q Consensus 220 Ddv~ 223 (374)
|.+.
T Consensus 163 DSIq 166 (446)
T PRK11823 163 DSIQ 166 (446)
T ss_pred echh
Confidence 9985
No 273
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.83 E-value=3.6 Score=36.39 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
..|+||||||.++...... .-..++|++....
T Consensus 28 ~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~ 59 (229)
T TIGR03881 28 EPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEES 59 (229)
T ss_pred CCCCChHHHHHHHHHHHHh--cCCeEEEEEccCC
Confidence 7899999999987654321 2346788876443
No 274
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=89.83 E-value=1.8 Score=40.76 Aligned_cols=80 Identities=19% Similarity=0.354 Sum_probs=46.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+... -+..++.-++.. -++..+.......-+.. ..+++.. ...-.+.+
T Consensus 77 ~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AE 152 (326)
T cd01136 77 GSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAE 152 (326)
T ss_pred CCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 679999999999887443 244555555543 35555555555443211 1111111 12334555
Q ss_pred HHh-cCCeEEEEEeCCCCc
Q 045120 208 RLK-NENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~-~~kr~LlVlDdv~~~ 225 (374)
++. .+|..||++||+-..
T Consensus 153 yfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 153 YFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHcCCCeEEEeccchHH
Confidence 554 258999999998643
No 275
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.79 E-value=0.78 Score=37.11 Aligned_cols=37 Identities=32% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQG 183 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 183 (374)
..|+|||+||+.++.... ....-+.++...+..++..
T Consensus 7 ~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 7 PPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp SSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence 689999999999998552 1244567777777776654
No 276
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=89.76 E-value=1.8 Score=38.70 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKI 181 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 181 (374)
-||+||||+|..+......++ + .++-|+.-...+....
T Consensus 10 KGGvGKTT~a~nLA~~la~~G-~-~VlliD~DpQ~s~~~w 47 (231)
T PRK13849 10 KGGAGKTTALMGLCAALASDG-K-RVALFEADENRPLTRW 47 (231)
T ss_pred CCCccHHHHHHHHHHHHHhCC-C-cEEEEeCCCCCCHHHH
Confidence 699999999998877655332 2 3455555555554443
No 277
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=89.69 E-value=1.5 Score=43.76 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=47.5
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHHH------HHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDRV-VFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEYR------RASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~l 205 (374)
..|+|||||| ..+.+.. .-|.+ +++.+++..+ ..++.+.+...=... ..+++... ..-.+
T Consensus 170 ~~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~ti 245 (502)
T PRK09281 170 DRQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAM 245 (502)
T ss_pred CCCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6699999995 5555532 24564 8888888754 455555555432211 11111111 22345
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.++++. +++.|||+||+...
T Consensus 246 AEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 246 GEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHcCCCEEEEecCchHH
Confidence 666653 48999999999754
No 278
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.55 E-value=9.7 Score=36.17 Aligned_cols=84 Identities=18% Similarity=0.084 Sum_probs=49.4
Q ss_pred CeEEEEEeCCCCcc--c----cccccCcCCCC------CcchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCc
Q 045120 213 NKILVILANIWKLL--D----LETVKIPFRND------SRDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENC 280 (374)
Q Consensus 213 kr~LlVlDdv~~~~--~----~~~l~~~~~~~------TR~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~ 280 (374)
++-.+|+|++..-. . +..+..|-+.. ++...+..+...--..+.+.+++.++..+.+... +. ++
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---AD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---Ch
Confidence 56688899987542 2 44444444443 3333333222222347889999999999888765 21 11
Q ss_pred chHHHHHHHHHHccCCchHHHHHHhc
Q 045120 281 KFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 281 ~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
...++..+ +|.|+.+..+..
T Consensus 208 -----~~~~l~~~-~Gsp~~Al~~~~ 227 (342)
T PRK06964 208 -----ADALLAEA-GGAPLAALALAS 227 (342)
T ss_pred -----HHHHHHHc-CCCHHHHHHHHC
Confidence 12357788 999975554443
No 279
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.36 E-value=0.27 Score=39.92 Aligned_cols=17 Identities=53% Similarity=0.667 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 78999999999998643
No 280
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=89.25 E-value=1.4 Score=40.41 Aligned_cols=19 Identities=47% Similarity=0.340 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.+|+||||+|+.+......
T Consensus 9 ~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 6899999999999886553
No 281
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=89.21 E-value=1.5 Score=43.72 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=47.6
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH-H-----HHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDRV-VFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY-R-----RASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~-~-----~~~~l 205 (374)
..|+|||||| ..+.+.. .-|.+ +++-+++.. ...++.+.+...=... ..+.+.. . ..-.+
T Consensus 170 ~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~ai 245 (502)
T PRK13343 170 DRQTGKTAIAIDAIINQK----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAI 245 (502)
T ss_pred CCCCCccHHHHHHHHhhc----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHH
Confidence 6699999996 5666532 34654 888888775 3555665554432211 1111111 1 12245
Q ss_pred HHHHh-cCCeEEEEEeCCCCc
Q 045120 206 YERLK-NENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~-~~kr~LlVlDdv~~~ 225 (374)
.++++ .+++.|||+||+...
T Consensus 246 AEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 246 AEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHhCCCCEEEEecchHHH
Confidence 56664 358999999999754
No 282
>PRK09099 type III secretion system ATPase; Provisional
Probab=89.21 E-value=1.3 Score=43.37 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=45.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+..... -+..+++-++.. -...++.+.+...-+.. ..+++.. ...-.+.+
T Consensus 171 ~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAE 246 (441)
T PRK09099 171 PAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAE 246 (441)
T ss_pred CCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 779999999999987443 234444444544 34555555554432211 1111111 12334666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 247 yfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 247 YFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 6642 58999999998654
No 283
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.18 E-value=0.51 Score=42.81 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
-||+||||+|-++.......+ -..++.|.....
T Consensus 11 KGGvGKTT~a~nLa~~La~~~-~~kVLliDlDpQ 43 (259)
T COG1192 11 KGGVGKTTTAVNLAAALAKRG-GKKVLLIDLDPQ 43 (259)
T ss_pred CCCccHHHHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 699999999999888665221 135667765544
No 284
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.18 E-value=1.8 Score=38.74 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+||+|||+||..+.-...
T Consensus 9 ~~G~GKS~lal~la~~va 26 (239)
T cd01125 9 PGGTGKSSLLLVLALAMA 26 (239)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 799999999999877543
No 285
>PRK08233 hypothetical protein; Provisional
Probab=89.17 E-value=0.26 Score=41.87 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+||||||..+....
T Consensus 11 ~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 11 VSGGGKTTLTERLTHKL 27 (182)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 67999999999998754
No 286
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.12 E-value=0.81 Score=48.98 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.8
Q ss_pred ccccccHHHHHHHHHHhhc-------C-----------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN-------A-----------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~-------~-----------~gGiGKTtLA~~v~~~~ 158 (374)
..++|-+..++.+.+.+.. + +.|+|||.||+.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999998888742 1 78999999999987753
No 287
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.02 E-value=2 Score=42.23 Aligned_cols=48 Identities=27% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLE 192 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 192 (374)
..|+||||+|..+....... .+ .+..|+. ..+. ..+-+..++.+++.+
T Consensus 103 ~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~-D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKK-GL-KVGLVAA-DTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHc-CC-eEEEecC-CCCCHHHHHHHHHHHHHcCCc
Confidence 89999999999988765532 23 3333433 2233 244456666666554
No 288
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=0.68 Score=44.06 Aligned_cols=18 Identities=44% Similarity=0.518 Sum_probs=16.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|.|||-||++|+....
T Consensus 253 PPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 253 PPGTGKTLLAKAVATECG 270 (491)
T ss_pred CCCCcHHHHHHHHHHhhc
Confidence 889999999999999665
No 289
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=88.95 E-value=0.98 Score=43.86 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=28.9
Q ss_pred ccccccHHHHHHHHHHhhc----------------C-------CCCccHHHHHHHHHHHhh
Q 045120 122 EAFESRVSNLKSTQNALTN----------------A-------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~----------------~-------~gGiGKTtLA~~v~~~~~ 159 (374)
..++|.+..++.+..++.. + +.|+||||||+.+.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477888888877766643 1 779999999999988643
No 290
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=0.91 Score=42.20 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=40.5
Q ss_pred CCCccHHHHHHHHHHHhhhc--CCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCC-eEEEE
Q 045120 142 NGGIGKTTLAKEFAKQARED--KLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNEN-KILVI 218 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~k-r~LlV 218 (374)
++|.|||+|.+.++.+..++ +.|....-+.++ ...++... ++.+ ..-...+-+++.+.+...+ =.++.
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKW---FsES--gKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKW---FSES--GKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred CCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHH---Hhhh--hhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999999999999987654 334333333332 22333222 2111 1123344556666666533 34556
Q ss_pred EeCCCC
Q 045120 219 LANIWK 224 (374)
Q Consensus 219 lDdv~~ 224 (374)
+|.|.+
T Consensus 256 IDEVES 261 (423)
T KOG0744|consen 256 IDEVES 261 (423)
T ss_pred eHHHHH
Confidence 677754
No 291
>PRK07667 uridine kinase; Provisional
Probab=88.82 E-value=0.47 Score=41.08 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||||+.+.....
T Consensus 25 ~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 25 LSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 889999999999988654
No 292
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=88.64 E-value=0.44 Score=42.49 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+.....
T Consensus 41 ~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 41 PPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 789999999999988654
No 293
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=88.62 E-value=2.9 Score=34.48 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+||||||+.+.....
T Consensus 7 ~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 7 LSGSGKSTIARALEEKLF 24 (149)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999988653
No 294
>PTZ00088 adenylate kinase 1; Provisional
Probab=88.59 E-value=0.49 Score=42.22 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 14 ~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 14 APGVGKGTFAEILSKKE 30 (229)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 89999999999998754
No 295
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=88.58 E-value=7.4 Score=32.09 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=30.5
Q ss_pred hhHH-HHHHHHHHHHhhhhHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Q 045120 2 LEVI-VTLVLELVKWLAPPTERQLVYLRKRNYNANLENLKAELEKLKVERTS 52 (374)
Q Consensus 2 a~i~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~ 52 (374)
|+++ +|+++.+++.+...+.+..... ..|+..++.+...++.+.-....
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~--~~fk~~l~~L~sTl~~i~P~i~e 52 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKS--LSFKSILKRLESTLESIIPIIKE 52 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHhhhHHHH
Confidence 4444 6778888888888777776666 55555555555555555444443
No 296
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=88.57 E-value=2.3 Score=41.51 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=50.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
-.|+|||+|+..+.+... -+.++|+-++...+ ...+.+++...=... ..+++.. ..+-.+.+
T Consensus 148 gaGvgk~~L~~~ia~~~~----~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAE 223 (436)
T PRK02118 148 VSGEPYNALLARIALQAE----ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAE 223 (436)
T ss_pred CCCCCHHHHHHHHHHhhC----CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999987554 35788999988754 444444444332111 1112221 12345677
Q ss_pred HHhc--CCeEEEEEeCCCCc
Q 045120 208 RLKN--ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~--~kr~LlVlDdv~~~ 225 (374)
+++. ++..|+++||+-..
T Consensus 224 yfrd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 224 KFALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHHhcCCCCEEEeccCchHH
Confidence 7764 28999999999754
No 297
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=88.49 E-value=0.19 Score=40.29 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=14.5
Q ss_pred CCCCccHHHHHHHHHHHhhhcCCCC
Q 045120 141 ANGGIGKTTLAKEFAKQAREDKLFD 165 (374)
Q Consensus 141 ~~gGiGKTtLA~~v~~~~~~~~~F~ 165 (374)
+..|+||||||+.+..... ..|.
T Consensus 6 g~PG~GKT~la~~lA~~~~--~~f~ 28 (131)
T PF07726_consen 6 GVPGVGKTTLAKALARSLG--LSFK 28 (131)
T ss_dssp S---HHHHHHHHHHHHHTT----EE
T ss_pred CCCccHHHHHHHHHHHHcC--Ccee
Confidence 3689999999999998544 4463
No 298
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=88.43 E-value=1.7 Score=42.56 Aligned_cols=80 Identities=14% Similarity=0.304 Sum_probs=42.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcC-------Cchh------hHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLE-------LSEE------AEYRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~------~~~~~~~~l~~ 207 (374)
..|+|||||++.+.+... .+..+...++.. .+..++....+..-+.. ..+. ...+.+..+.+
T Consensus 163 ~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAE 238 (434)
T PRK07196 163 GSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIAT 238 (434)
T ss_pred CCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHH
Confidence 679999999999887432 344434444332 23333333333332211 1111 12223344555
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++.. +++.||++||+...
T Consensus 239 yfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 239 YYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HhhhccCCEEEeecchhHH
Confidence 5532 48999999998654
No 299
>PRK06820 type III secretion system ATPase; Validated
Probab=88.28 E-value=2.5 Score=41.43 Aligned_cols=80 Identities=15% Similarity=0.307 Sum_probs=43.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCc-------CCchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD-IKKIQGDIAEKLGL-------ELSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~-------~~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+.. +-+..++..++...+ ...+....+..=.. ...+.+.. ..+-.+.+
T Consensus 171 ~sG~GKStLl~~I~~~~----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAE 246 (440)
T PRK06820 171 AAGVGKSTLLGMLCADS----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAE 246 (440)
T ss_pred CCCCChHHHHHHHhccC----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 77999999999888633 235566666666532 22222222110000 01111111 12335666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 247 yfrd~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 247 YFRDRGKKVLLMADSLTRY 265 (440)
T ss_pred HHHHcCCCEEEEccchhHH
Confidence 6652 58999999998654
No 300
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.26 E-value=1.1 Score=47.09 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=50.6
Q ss_pred cccccHHHHHHHHHHhhc--------C----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTN--------A----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~--------~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
.++|-+..++.|.+.+.. . +.|+|||+||+.+..... . ..+.++++...... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhcccc----c
Confidence 478888888888887762 1 779999999999987542 1 22334443322111 1
Q ss_pred HHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 185 IAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 185 i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
+..-+|.+..-.. .+....+.+.+......+|+||++...
T Consensus 530 ~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222232211000 011123444444434579999998754
No 301
>PRK03839 putative kinase; Provisional
Probab=88.21 E-value=0.34 Score=41.32 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.+...
T Consensus 8 ~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999998653
No 302
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=88.14 E-value=1.8 Score=42.36 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=44.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH-HHHHHHHHHHhCcC---------CchhhHH------HHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI-KKIQGDIAEKLGLE---------LSEEAEY------RRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~---------~~~~~~~------~~~~~l 205 (374)
..|+|||||++.+..... -+..+...++..... .+..+. .++.. ..+++.. .....+
T Consensus 165 ~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R~~~~~~a~~i 237 (434)
T PRK08472 165 GSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMRKYGAFCAMSV 237 (434)
T ss_pred CCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHhhHHHHHHHHH
Confidence 779999999999986432 345566666665443 333232 22221 1111111 123456
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.+++.+ +++.||++||+-..
T Consensus 238 AEyFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 238 AEYFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHHHcCCCEEEecccchHH
Confidence 666642 58999999999654
No 303
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=88.13 E-value=2.1 Score=41.79 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=44.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+... -+..+..-++... ...++....+..-+.. ..+++.. ...-.+.+
T Consensus 145 ~sG~GKTtLl~~i~~~~~----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAE 220 (413)
T TIGR03497 145 GSGVGKSTLLGMIARNAK----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAE 220 (413)
T ss_pred CCCCCHHHHHHHHhCCCC----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 779999999998887433 2333444455443 3444444433321111 1111111 22345666
Q ss_pred HHh-cCCeEEEEEeCCCCc
Q 045120 208 RLK-NENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~-~~kr~LlVlDdv~~~ 225 (374)
+++ .+++.||++||+...
T Consensus 221 yfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 221 YFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHCCCCEEEEEcCcHHH
Confidence 664 358999999999643
No 304
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.07 E-value=27 Score=34.03 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=28.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLE 192 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 192 (374)
.-|.||||-|-.+.+..+- ....+-+...+.+. ..+-++.+.++++.+
T Consensus 108 LQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 108 LQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred ccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 6799999988887776553 22233333333333 334455666666654
No 305
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.05 E-value=0.55 Score=43.11 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||++++.....
T Consensus 41 ~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 41 PSGTGKTSLIQNFLSS 56 (272)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred CCCCchhHHHHhhhcc
Confidence 8899999999998864
No 306
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=87.95 E-value=0.39 Score=37.23 Aligned_cols=18 Identities=61% Similarity=0.744 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+|||+||+.+..+..
T Consensus 6 ~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999887654
No 307
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=87.80 E-value=0.76 Score=42.96 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|....-...
T Consensus 9 KGGVGKTT~aaA~A~~~A 26 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALA 26 (305)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHh
Confidence 699999999977665444
No 308
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=87.78 E-value=1.9 Score=42.14 Aligned_cols=80 Identities=23% Similarity=0.423 Sum_probs=45.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+..... -+..+.+.++... ...++....+..-+.. ..+++.. ...-.+.+
T Consensus 148 ~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAE 223 (418)
T TIGR03498 148 GSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAE 223 (418)
T ss_pred CCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 679999999998887433 2333444444433 3455555444332211 1111111 12334666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 224 yfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 224 YFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 6643 58999999998654
No 309
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=87.73 E-value=0.43 Score=40.90 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
.||+||||+|..+......++ + .++-++.....+..
T Consensus 7 kGG~GKTt~a~~la~~la~~g-~-~VlliD~D~~~~~~ 42 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARKG-K-KVLLIDLDPQAPNL 42 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-S--EEEEEESTTSHHH
T ss_pred CCCccHHHHHHHHHhcccccc-c-cccccccCcccccH
Confidence 699999999998887665422 2 45556654443333
No 310
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.71 E-value=0.54 Score=40.88 Aligned_cols=18 Identities=61% Similarity=0.752 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||+|+++..-.+
T Consensus 9 yPgsGKTtfakeLak~L~ 26 (261)
T COG4088 9 YPGSGKTTFAKELAKELR 26 (261)
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 789999999999988554
No 311
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=87.70 E-value=0.48 Score=39.51 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=19.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFS 170 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 170 (374)
..|+||||||+.+.......+ ..+.++
T Consensus 10 lsGsGKtTlA~~L~~~L~~~g--~~~~~L 36 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFARG--IKVYLL 36 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--S-EEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CcEEEe
Confidence 789999999999999766432 345555
No 312
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.70 E-value=0.37 Score=41.75 Aligned_cols=18 Identities=50% Similarity=0.597 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||||+.+.....
T Consensus 7 ~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999988654
No 313
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=3.5 Score=42.48 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=51.4
Q ss_pred ccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 122 EAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
..+-|..+.++-+.+.+.-+ ++|+|||.||.++...... -||+|..+ +
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP---E 736 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP---E 736 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH---H
Confidence 34667777776666666544 8899999999999875442 25666543 1
Q ss_pred HHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045120 180 KIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWK 224 (374)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 224 (374)
++ -+.+|.+ ++..+.+++.-+.-|.|.|.+|...+
T Consensus 737 -lL---~KyIGaS------Eq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 737 -LL---SKYIGAS------EQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred -HH---HHHhccc------HHHHHHHHHHhhccCCeEEEeccccc
Confidence 11 1122211 22344555555544899999998764
No 314
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=87.47 E-value=2.7 Score=42.49 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=51.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHh----CcC----------CchhhHHH------
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKL----GLE----------LSEEAEYR------ 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l----~~~----------~~~~~~~~------ 200 (374)
..|+|||+|++++.+.. +-|.++++-++... .+.+++.++-+.. +.+ ..+++...
T Consensus 235 ~~G~GKTvl~~~iak~a----~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~y 310 (586)
T PRK04192 235 PFGSGKTVTQHQLAKWA----DADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIY 310 (586)
T ss_pred CCCCCHHHHHHHHHhcC----CCCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHH
Confidence 66999999999998753 24789999888775 4566666654422 111 11222221
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045120 201 RASRLYERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 201 ~~~~l~~~L~~-~kr~LlVlDdv~~~ 225 (374)
..-.+.+++++ ++..||++|++...
T Consensus 311 tgiTiAEYfRd~G~~Vllm~DStSR~ 336 (586)
T PRK04192 311 TGITIAEYYRDMGYDVLLMADSTSRW 336 (586)
T ss_pred HHHHHHHHHHHCCCCEEEEecChHHH
Confidence 22356666653 58999999999643
No 315
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.47 E-value=4.1 Score=41.03 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=46.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc----------------hhhHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS----------------EEAEYRRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------------~~~~~~~~~~l 205 (374)
..|+|||+||.++..+.... -..++|++.... ...+.+.. ..++.+.. ..+.++....+
T Consensus 281 ~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i 355 (509)
T PRK09302 281 ATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYGLEDHLIII 355 (509)
T ss_pred CCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCCHHHHHHHH
Confidence 78999999999987765422 356888876654 44444433 34442210 11234455566
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 045120 206 YERLKNENKILVILANIW 223 (374)
Q Consensus 206 ~~~L~~~kr~LlVlDdv~ 223 (374)
.+.+...+.-++|+|.+.
T Consensus 356 ~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 356 KREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHcCCCEEEEcCHH
Confidence 666655355689999874
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=87.46 E-value=3.2 Score=36.75 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+||||||+.+.....
T Consensus 7 ~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 7 SVAVGKSTTARVLQALLS 24 (220)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 579999999999988553
No 317
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=87.43 E-value=0.48 Score=33.46 Aligned_cols=17 Identities=47% Similarity=0.689 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||+++.+.+..
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998864
No 318
>PRK06762 hypothetical protein; Provisional
Probab=87.43 E-value=0.41 Score=40.13 Aligned_cols=17 Identities=47% Similarity=0.730 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+.+..
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 319
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=87.34 E-value=2.4 Score=41.50 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=46.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcC-------CchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLE-------LSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~l~~ 207 (374)
..|+|||||++.+...... +.....-+++. ....+++...+..-+.. ..+.+. ...+..+.+
T Consensus 164 ~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAE 239 (432)
T PRK06793 164 GSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAE 239 (432)
T ss_pred CCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6799999999999875432 22222334433 55666666555543221 111111 122335556
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
+++. ++..||++||+-..
T Consensus 240 yfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 240 YFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHcCCcEEEEecchHHH
Confidence 6643 58999999998654
No 320
>PHA02518 ParA-like protein; Provisional
Probab=87.29 E-value=0.46 Score=41.41 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=23.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKK 180 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 180 (374)
-||+||||+|..+..-....+ ..++-++.....+...
T Consensus 9 KGGvGKTT~a~~la~~la~~g--~~vlliD~D~q~~~~~ 45 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADG--HKVLLVDLDPQGSSTD 45 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCC--CeEEEEeCCCCCChHH
Confidence 699999999998876544222 2455566655544443
No 321
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=87.25 E-value=5 Score=36.35 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
.+|+|||++|.++..+...... ..++|++. .-+..++...++...
T Consensus 27 ~pg~GKT~~~l~ia~~~a~~~~-~~vly~Sl--Em~~~~l~~R~la~~ 71 (259)
T PF03796_consen 27 RPGVGKTAFALQIALNAALNGG-YPVLYFSL--EMSEEELAARLLARL 71 (259)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-SEEEEEES--SS-HHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHHHhcC-CeEEEEcC--CCCHHHHHHHHHHHh
Confidence 7899999999999988765433 46666654 445566666666655
No 322
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=87.20 E-value=0.41 Score=36.63 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+..-..
T Consensus 8 kgG~Gkst~~~~la~~~~ 25 (104)
T cd02042 8 KGGVGKTTTAVNLAAALA 25 (104)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 699999999988866543
No 323
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=87.19 E-value=0.43 Score=39.20 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhc
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKN 211 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~ 211 (374)
.+|+||||||..+..... .-|+++|+-..-..+...-=+... ...-+++.+.+.|...+.+
T Consensus 15 TPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y~--c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 15 TPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEYK--CHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhccccccc--CccccHHHHHHHHHHHHhc
Confidence 789999999999986333 236666654332222221111111 1112556667777777765
No 324
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.99 E-value=2.9 Score=37.91 Aligned_cols=80 Identities=18% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCcCCch-------hhHHHHH-HHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-----TSDIKKIQGDIAEKLGLELSE-------EAEYRRA-SRLYER 208 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~-~~l~~~ 208 (374)
-.|+|||||++.+..=.. .-.+.++..-.+ .....+-..++++.++..... -+..+++ -.+.+.
T Consensus 47 ESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 47 ESGCGKSTLGRLILGLEE---PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred cCCCCHHHHHHHHHcCcC---CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHH
Confidence 779999999999987333 222333332111 112334455666666644211 1223322 356667
Q ss_pred HhcCCeEEEEEeCCCCc
Q 045120 209 LKNENKILVILANIWKL 225 (374)
Q Consensus 209 L~~~kr~LlVlDdv~~~ 225 (374)
|.- +.-|||.|..-+.
T Consensus 124 Lal-~P~liV~DEpvSa 139 (268)
T COG4608 124 LAL-NPKLIVADEPVSA 139 (268)
T ss_pred Hhh-CCcEEEecCchhh
Confidence 776 7899999986544
No 325
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.99 E-value=0.76 Score=38.35 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=29.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS 194 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 194 (374)
.+|+||||+|+.+.++.... +| +.-.+++++++..+.+..
T Consensus 8 ~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 8 LPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLE 47 (179)
T ss_pred CCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHH
Confidence 68999999999999876533 11 334677888888887643
No 326
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=86.91 E-value=1.1 Score=39.71 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
-||+||||+|..+......++.|+ ++=|+...++++
T Consensus 8 KGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 8 KGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred CCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 599999999988666544343332 344444445553
No 327
>COG1158 Rho Transcription termination factor [Transcription]
Probab=86.88 E-value=5.7 Score=37.23 Aligned_cols=80 Identities=13% Similarity=0.204 Sum_probs=49.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhC-cCCchhh--HHH----HHHHHHHHHhcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT--SDIKKIQGDIAEKLG-LELSEEA--EYR----RASRLYERLKNE 212 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~-~~~~~~~--~~~----~~~~l~~~L~~~ 212 (374)
++-.|||||.+.|+|... .+|-++.+||-+-.. -.+.++++.+--.+- ..+++.. .-+ .+++-++....+
T Consensus 181 PPkaGKT~lLq~IA~aIt-~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~ 259 (422)
T COG1158 181 PPKAGKTTLLQNIANAIT-TNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHG 259 (422)
T ss_pred CCCCCchHHHHHHHHHHh-cCCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCCcchhhHHHHHHHHHHHHHHHHcC
Confidence 889999999999999654 467799999865443 244555555432221 1222211 111 234444555556
Q ss_pred CeEEEEEeCC
Q 045120 213 NKILVILANI 222 (374)
Q Consensus 213 kr~LlVlDdv 222 (374)
|...|+||-+
T Consensus 260 kDVVILLDSI 269 (422)
T COG1158 260 KDVVILLDSI 269 (422)
T ss_pred CcEEEEehhH
Confidence 7888888876
No 328
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=86.86 E-value=0.71 Score=46.67 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=31.3
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
..+++|.+..++.+...+... ..|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 446899999999988877643 88999999999998743
No 329
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=86.85 E-value=3.5 Score=40.39 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=45.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||.+.+.+... .+...++.++.. .++..+..+........ ..+.+.. ...-.+.+
T Consensus 153 ~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE 228 (422)
T TIGR02546 153 GAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAE 228 (422)
T ss_pred CCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 779999999999987443 344555555554 34555554444332111 1111111 12234555
Q ss_pred HHh-cCCeEEEEEeCCCCc
Q 045120 208 RLK-NENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~-~~kr~LlVlDdv~~~ 225 (374)
++. .+++.|+++|++...
T Consensus 229 ~f~~~g~~Vl~~~Dsltr~ 247 (422)
T TIGR02546 229 YFRDQGKRVLLMMDSLTRF 247 (422)
T ss_pred HHHHCCCcEEEEEeCchHH
Confidence 554 258999999999643
No 330
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=86.72 E-value=0.81 Score=43.26 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=28.8
Q ss_pred ccccccccHHHHHHHHHHhh-cC--------CCCccHHHHHHHHHHH
Q 045120 120 VYEAFESRVSNLKSTQNALT-NA--------NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~-~~--------~gGiGKTtLA~~v~~~ 157 (374)
+...++|.+..++.+.-.+. .+ ..|+||||||+.+.+-
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 34568899999888765443 22 7899999999998663
No 331
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=86.70 E-value=2.9 Score=42.90 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=67.0
Q ss_pred cccccccHHHHHHHHHHhhcC--------------CCCccHHHHHHHHHHHhh---hcCCCC--eEEEEEeCCCCCHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA--------------NGGIGKTTLAKEFAKQAR---EDKLFD--RVVFSEVSQTSDIKKI 181 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~--------------~gGiGKTtLA~~v~~~~~---~~~~F~--~~~wv~vs~~~~~~~~ 181 (374)
+..+-+||.+..+|-+.+..- .+|+|||..+..|.+... .++.-. ..+.|+.-.-..+.++
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 345678999999998887532 679999999999988654 122222 2344554455679999
Q ss_pred HHHHHHHhCcCCchhhHHHHHHHHHHHHh----cCCeEEEEEeCCC
Q 045120 182 QGDIAEKLGLELSEEAEYRRASRLYERLK----NENKILVILANIW 223 (374)
Q Consensus 182 ~~~i~~~l~~~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~ 223 (374)
...|...+....... ...++.|..+.. ..+.+++++|++.
T Consensus 475 Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD 518 (767)
T KOG1514|consen 475 YEKIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELD 518 (767)
T ss_pred HHHHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHH
Confidence 999999997654322 222334444443 2367899999875
No 332
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=2.4 Score=42.53 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=18.9
Q ss_pred CceecCCCCHHHHHHHHHHhcCC
Q 045120 253 DNFLIANITEEEAWRLFKIMNGD 275 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~ 275 (374)
..+.+.+-+.++..+.|+.+..+
T Consensus 403 ~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 403 RLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEeecCCCCHHHHHHHHHHHhcc
Confidence 46778888899999999988863
No 333
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=86.63 E-value=1 Score=41.01 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
-||+||||++..+..-....+ + .++-|+.....
T Consensus 9 KGGvGKTT~~~nLA~~La~~G-~-kVlliD~Dpq~ 41 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMG-K-KVMIVGCDPKA 41 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-C-eEEEEEcCCCC
Confidence 599999999988877654332 2 34445444433
No 334
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.58 E-value=3.1 Score=41.55 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=19.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC-CeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF-DRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs 173 (374)
.+|+||||||.++..+-..+ + ..++||+..
T Consensus 29 ~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~e 59 (484)
T TIGR02655 29 TSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFE 59 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEe
Confidence 88999999999875432211 2 345566543
No 335
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.53 E-value=3.6 Score=39.81 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=39.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcCCch-hhHHHHHHHHHHHHhcCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLELSE-EAEYRRASRLYERLKNENKILVI 218 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~~~kr~LlV 218 (374)
.+|+||||++..+......+ .+ .+..++. +.+. ..+-+....+.++.+... .+...+...+...-...+.=+|+
T Consensus 249 ptGvGKTTTiaKLA~~L~~~-Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVL 325 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHGK-KK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYIL 325 (436)
T ss_pred CCCCcHHHHHHHHHHHHHHc-CC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEE
Confidence 88999999999988755422 22 3344443 3333 222333444455544321 23444444333322111235777
Q ss_pred EeCCC
Q 045120 219 LANIW 223 (374)
Q Consensus 219 lDdv~ 223 (374)
+|-.-
T Consensus 326 IDTaG 330 (436)
T PRK11889 326 IDTAG 330 (436)
T ss_pred EeCcc
Confidence 78653
No 336
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=86.35 E-value=0.56 Score=37.43 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.=|.|||||++.+.....+
T Consensus 23 dLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 23 DLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp STTSSHHHHHHHHHHHTT-
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 4599999999999886543
No 337
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.22 E-value=1.2 Score=41.88 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=23.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQ 182 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 182 (374)
.||+||||+|-+..-.....+ ..++-|+.....++.+++
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhh
Confidence 799999999988555444222 336666554444444433
No 338
>PRK05480 uridine/cytidine kinase; Provisional
Probab=86.16 E-value=0.51 Score=41.29 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||||+.+....
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 14 GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999999854
No 339
>PRK06547 hypothetical protein; Provisional
Probab=86.15 E-value=0.91 Score=38.57 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||||+.+....
T Consensus 23 ~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 23 RSGSGKTTLAGALAART 39 (172)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998753
No 340
>PLN02924 thymidylate kinase
Probab=86.15 E-value=4.2 Score=36.04 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhh--------HHHHHHHHHHHHhcCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEA--------EYRRASRLYERLKNEN 213 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~--------~~~~~~~l~~~L~~~k 213 (374)
.-|+||||+|+.+....... .+....+-..+.........+.++.... ...... ..+....+...|..
T Consensus 24 iDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~~~~-~~~~~~~~llf~adR~~~~~~I~pal~~-- 99 (220)
T PLN02924 24 LDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLSNKS-QLDDRAIHLLFSANRWEKRSLMERKLKS-- 99 (220)
T ss_pred CCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 77999999999999977644 3444333222222334455555554321 111111 11112335555555
Q ss_pred eEEEEEeCCC
Q 045120 214 KILVILANIW 223 (374)
Q Consensus 214 r~LlVlDdv~ 223 (374)
...+|.|--.
T Consensus 100 g~vVI~DRy~ 109 (220)
T PLN02924 100 GTTLVVDRYS 109 (220)
T ss_pred CCEEEEccch
Confidence 3468888754
No 341
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=86.14 E-value=0.68 Score=41.61 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=19.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV 172 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 172 (374)
|+|+||||+++.+.+.....+ ..++-|+.
T Consensus 4 paGSGKTT~~~~~~~~~~~~~--~~~~~vNL 32 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESNG--RDVYIVNL 32 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHhcc--CCceEEEc
Confidence 789999999999998765432 23444543
No 342
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=86.08 E-value=0.47 Score=39.67 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=26.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe-----CCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV-----SQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-----s~~~~~~~~~~~i~~~l 189 (374)
.-|+||||+|..+.+ -|+. |-++ +.+ ....+.+.+++.|
T Consensus 7 tiGCGKTTva~aL~~------LFg~--wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 7 TIGCGKTTVALALSN------LFGE--WGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CCCcCHHHHHHHHHH------HcCC--CCccccCCCCCC-CHHHHHHHHHHHH
Confidence 359999999999886 2543 4433 333 5677777777777
No 343
>PTZ00301 uridine kinase; Provisional
Probab=86.06 E-value=0.53 Score=41.44 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+||||||+.+....
T Consensus 11 ~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 11 ASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 67999999999988754
No 344
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.05 E-value=5.6 Score=38.58 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=22.1
Q ss_pred hcCCCCceecCCCCHHHHHHHHHHhcC
Q 045120 248 SMGSKDNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 248 ~~~~~~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
.+...-++.+.+.+.+....++.+.+.
T Consensus 232 R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 232 RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 444456899999999999999998764
No 345
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=86.05 E-value=0.5 Score=41.37 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||+.+....
T Consensus 14 ~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 346
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=85.98 E-value=0.51 Score=41.14 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=16.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
|=|+||||||+.+.++..
T Consensus 12 ~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 12 MIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccccCHHHHHHHHHHHhC
Confidence 779999999999998665
No 347
>PRK08760 replicative DNA helicase; Provisional
Probab=85.90 E-value=5 Score=40.00 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=28.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
.+|+||||+|..+..+...+.... ++++ |-.-+..++...++...
T Consensus 237 rPg~GKTafal~iA~~~a~~~g~~-V~~f--SlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 237 RPAMGKTTFALNIAEYAAIKSKKG-VAVF--SMEMSASQLAMRLISSN 281 (476)
T ss_pred CCCCChhHHHHHHHHHHHHhcCCc-eEEE--eccCCHHHHHHHHHHhh
Confidence 779999999999987665443343 3444 33444556666655543
No 348
>PRK05748 replicative DNA helicase; Provisional
Probab=85.89 E-value=38 Score=33.45 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=29.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
.+|+|||+||..+..+...+... .++|++ -.-+..++...++...+
T Consensus 211 rpg~GKT~~al~ia~~~a~~~g~-~v~~fS--lEms~~~l~~R~l~~~~ 256 (448)
T PRK05748 211 RPSVGKTAFALNIAQNVATKTDK-NVAIFS--LEMGAESLVMRMLCAEG 256 (448)
T ss_pred CCCCCchHHHHHHHHHHHHhCCC-eEEEEe--CCCCHHHHHHHHHHHhc
Confidence 77999999999988765433233 344543 34455666666665443
No 349
>PRK00625 shikimate kinase; Provisional
Probab=85.88 E-value=0.56 Score=39.90 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
|.|+||||+++.+.+...
T Consensus 8 ~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 899999999999987543
No 350
>PRK06217 hypothetical protein; Validated
Probab=85.86 E-value=0.55 Score=40.22 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||||+.+.....
T Consensus 9 ~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 9 ASGSGTTTLGAALAERLD 26 (183)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 689999999999998654
No 351
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=85.82 E-value=1.2 Score=38.92 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=26.0
Q ss_pred ccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAK 156 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~ 156 (374)
..++|-+..+..+.-..... ..|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHH
Confidence 45778887777776555544 889999999999865
No 352
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=85.81 E-value=1.7 Score=42.74 Aligned_cols=80 Identities=19% Similarity=0.367 Sum_probs=43.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+... -+.++...+.... +..++.+.++..-... ..+++.. ...-.+.+
T Consensus 183 ~sG~GKTTLL~~Ia~~~~----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAE 258 (455)
T PRK07960 183 GSGVGKSVLLGMMARYTQ----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAE 258 (455)
T ss_pred CCCCCccHHHHHHhCCCC----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 779999999999887432 2344444444332 4444444433211110 1111111 12234556
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.|+++||+-..
T Consensus 259 yfrd~G~~Vll~~DslTr~ 277 (455)
T PRK07960 259 DFRDRGQHVLLIMDSLTRY 277 (455)
T ss_pred HHHHcCCCeEEEecchhHH
Confidence 6643 58999999998654
No 353
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=85.80 E-value=4.5 Score=40.72 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
.+|+|||+||.++......+ +=..++|++....
T Consensus 39 ~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee~ 71 (509)
T PRK09302 39 TAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEES 71 (509)
T ss_pred CCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccCC
Confidence 88999999999876543322 1135677765543
No 354
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.79 E-value=0.74 Score=40.04 Aligned_cols=80 Identities=10% Similarity=0.156 Sum_probs=39.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH--HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI--KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
+.|+||||++..+..... .+....+++- ..+... .. ...++.+-.. ..+.....+.++..|.. ..=.|++
T Consensus 9 ptGSGKTTll~~ll~~~~--~~~~~~i~t~-e~~~E~~~~~-~~~~i~q~~v---g~~~~~~~~~i~~aLr~-~pd~ii~ 80 (198)
T cd01131 9 PTGSGKSTTLAAMIDYIN--KNKTHHILTI-EDPIEFVHES-KRSLINQREV---GLDTLSFENALKAALRQ-DPDVILV 80 (198)
T ss_pred CCCCCHHHHHHHHHHHhh--hcCCcEEEEE-cCCccccccC-ccceeeeccc---CCCccCHHHHHHHHhcC-CcCEEEE
Confidence 679999999998877543 2233343332 211110 00 0011111000 01112234556777766 5668899
Q ss_pred eCCCCccccc
Q 045120 220 ANIWKLLDLE 229 (374)
Q Consensus 220 Ddv~~~~~~~ 229 (374)
|.+.+.+.+.
T Consensus 81 gEird~e~~~ 90 (198)
T cd01131 81 GEMRDLETIR 90 (198)
T ss_pred cCCCCHHHHH
Confidence 9987654433
No 355
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=85.75 E-value=2.2 Score=40.09 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=25.4
Q ss_pred ccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhh
Q 045120 124 FESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~ 159 (374)
++=.......++.+|..+ ..|+||||||+.+.....
T Consensus 47 y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 333344555677776544 889999999999988543
No 356
>PRK00279 adk adenylate kinase; Reviewed
Probab=85.74 E-value=2.6 Score=37.00 Aligned_cols=17 Identities=41% Similarity=0.364 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKY 24 (215)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998643
No 357
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=85.74 E-value=0.63 Score=41.29 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=21.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
-||.||||++..++.....++ ..+.-+....+
T Consensus 10 KGGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn 41 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARG--ARVALIDADPN 41 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 699999999999988765433 23444444433
No 358
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=85.73 E-value=0.63 Score=39.26 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.||+||||+|..+.....
T Consensus 8 kgG~GKtt~a~~la~~l~ 25 (179)
T cd02036 8 KGGVGKTTTTANLGTALA 25 (179)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 799999999999877655
No 359
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=85.69 E-value=2.4 Score=44.04 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=17.9
Q ss_pred CceecCCCCHHHHHHHHHHhcCC
Q 045120 253 DNFLIANITEEEAWRLFKIMNGD 275 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~ 275 (374)
..+.++..+.++-.++|..+...
T Consensus 315 r~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 315 RQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eEEEcCCCCHHHHHHHHHHHhhc
Confidence 46778888888888888887753
No 360
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.67 E-value=4.1 Score=39.80 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=27.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCcCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-TSDIKKIQGDIAEKLGLEL 193 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 193 (374)
.-|+||||++..+..........+.+..+.... .....+-+....+.++.+.
T Consensus 199 pnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 199 PTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 679999999988876433222223444443222 1223333445555655553
No 361
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=85.64 E-value=3.3 Score=40.72 Aligned_cols=80 Identities=14% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHh------C-cCCchhhH------HHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKL------G-LELSEEAE------YRRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l------~-~~~~~~~~------~~~~~~l~~ 207 (374)
..|+|||||++.+.+.... +.....-++.. -+..++....+..- . ....+++. ....-.+.+
T Consensus 166 ~sG~GKStLl~~I~~~~~~----~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAE 241 (438)
T PRK07721 166 GSGVGKSTLMGMIARNTSA----DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAE 241 (438)
T ss_pred CCCCCHHHHHHHHhcccCC----CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6799999999988874432 22222233333 23444433322111 0 01111111 122335666
Q ss_pred HHhc-CCeEEEEEeCCCCc
Q 045120 208 RLKN-ENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~~-~kr~LlVlDdv~~~ 225 (374)
++++ +++.||++||+...
T Consensus 242 yfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 242 YFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHCCCcEEEEEeChHHH
Confidence 6642 58999999999643
No 362
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=85.56 E-value=3.9 Score=41.27 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=50.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHh------CcC----------CchhhHHH----
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKL------GLE----------LSEEAEYR---- 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l------~~~----------~~~~~~~~---- 200 (374)
..|+|||+|++++.+. ..-|.++++-++..- .+.+++.++-+.. +.+ ..+++...
T Consensus 234 g~G~GKT~l~~~lak~----s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s 309 (591)
T TIGR01042 234 AFGCGKTVISQSLSKY----SNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREAS 309 (591)
T ss_pred CCCcCHHHHHHHHHhc----cCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHH
Confidence 5699999999998662 236789999887764 4566666643221 001 11122211
Q ss_pred --HHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045120 201 --RASRLYERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 201 --~~~~l~~~L~~-~kr~LlVlDdv~~~ 225 (374)
..-.+.+++++ +++.||++|++...
T Consensus 310 ~ytg~tiAEYfRD~G~~Vll~~DS~tR~ 337 (591)
T TIGR01042 310 IYTGITLAEYFRDMGYNVSMMADSTSRW 337 (591)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 22356667753 58999999998643
No 363
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=85.54 E-value=1.1 Score=36.23 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.-|+|||||++.+......
T Consensus 30 ~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 6699999999999986543
No 364
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=85.54 E-value=0.62 Score=39.23 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
-||+||||+|..+......
T Consensus 8 kgG~GKTt~a~~LA~~la~ 26 (169)
T cd02037 8 KGGVGKSTVAVNLALALAK 26 (169)
T ss_pred CCcCChhHHHHHHHHHHHH
Confidence 6999999999888776543
No 365
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=85.47 E-value=9 Score=32.05 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHh
Q 045120 126 SRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 126 Gr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~ 158 (374)
|-+...+.|.+.+..+ ..|+||+|+|..+.+..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666777777665 78999999998887753
No 366
>PHA02244 ATPase-like protein
Probab=85.33 E-value=1.8 Score=41.40 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=24.5
Q ss_pred cccccHHHH----HHHHHHhhcC-------CCCccHHHHHHHHHHHh
Q 045120 123 AFESRVSNL----KSTQNALTNA-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 123 ~~vGr~~~~----~~i~~~L~~~-------~gGiGKTtLA~~v~~~~ 158 (374)
.++|..... ..+..++..+ +.|+|||+||+++.+..
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 355544333 3455555554 88999999999999854
No 367
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=85.28 E-value=0.76 Score=41.66 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEE-------EeCCCCCHHHH--HHHHHHHhCcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFS-------EVSQTSDIKKI--QGDIAEKLGLE 192 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~vs~~~~~~~~--~~~i~~~l~~~ 192 (374)
|+|+||||+.+.++.+...++.-..++=. ...-+.++++. .++++++.+..
T Consensus 27 MAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 99999999999999987644332222221 12223355544 34677776554
No 368
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.23 E-value=0.61 Score=38.30 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||+|+.+...
T Consensus 7 ~~GsGKST~a~~l~~~ 22 (150)
T cd02021 7 VSGSGKSTVGKALAER 22 (150)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 7899999999999874
No 369
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.22 E-value=4.3 Score=39.26 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=42.4
Q ss_pred CCCccHHHHHHHHHHHhhhcC--CCCeEEEEEeCCCCCHH--HHHHHHHHHhCcCCchh-hHHHHHHHHHHHHhcCCeEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDK--LFDRVVFSEVSQTSDIK--KIQGDIAEKLGLELSEE-AEYRRASRLYERLKNENKIL 216 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~L~~~kr~L 216 (374)
..|+||||.+..+........ +=..+..++.. ++... .-++..++.++.+.... +..+....+.+ + . +.-+
T Consensus 182 ptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-~-~-~~Dl 257 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-S-K-DFDL 257 (388)
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-h-C-CCCE
Confidence 789999999888877554221 11234455443 43333 23555666666653322 22333333333 2 2 4568
Q ss_pred EEEeCCC
Q 045120 217 VILANIW 223 (374)
Q Consensus 217 lVlDdv~ 223 (374)
|++|..-
T Consensus 258 VLIDTaG 264 (388)
T PRK12723 258 VLVDTIG 264 (388)
T ss_pred EEEcCCC
Confidence 8888874
No 370
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=85.20 E-value=0.97 Score=42.97 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=31.0
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
...++|-++.+..|+..+.++ ..|+||||+|+.+++-.
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999888888777665 67999999999997753
No 371
>PRK13695 putative NTPase; Provisional
Probab=85.14 E-value=1.1 Score=37.94 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=19.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFS 170 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 170 (374)
..|+|||||++.+++..... .|....|+
T Consensus 8 ~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 8 PPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 68999999999998865432 34444343
No 372
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=85.14 E-value=0.95 Score=42.75 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=44.7
Q ss_pred ccccccHHHHHHHHHHhhcC---------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC----CCC---CHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS----QTS---DIK 179 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs----~~~---~~~ 179 (374)
..|+|.++.+++|++.+... +-|.||||||..+-+-.+ . | .+|+-.. ..+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le--~-y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE--E-Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh--e-E--EEEEecCCccccChhhhCCH
Confidence 36999999999999998754 779999999999987443 2 2 3443211 111 134
Q ss_pred HHHHHHHHHhCcCC
Q 045120 180 KIQGDIAEKLGLEL 193 (374)
Q Consensus 180 ~~~~~i~~~l~~~~ 193 (374)
++-..+.+.++...
T Consensus 136 ~~r~~~~~~~~~~i 149 (358)
T PF08298_consen 136 ELRREFEDELGIRI 149 (358)
T ss_pred hHHHHHHHHhCccc
Confidence 55556666666543
No 373
>PRK00131 aroK shikimate kinase; Reviewed
Probab=85.13 E-value=0.63 Score=39.06 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 12 ~~GsGKstla~~La~~l 28 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 89999999999999854
No 374
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=85.09 E-value=0.8 Score=39.15 Aligned_cols=17 Identities=35% Similarity=0.646 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.++.+.
T Consensus 12 PSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 12 PSGVGKSTLVKALLEDD 28 (191)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 88999999999999854
No 375
>PRK07773 replicative DNA helicase; Validated
Probab=85.00 E-value=39 Score=36.62 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
-+|+|||++|..+..+...+... .+++++. .-+..++...++.
T Consensus 225 rPg~GKT~fal~ia~~~a~~~~~-~V~~fSl--Ems~~ql~~R~~s 267 (886)
T PRK07773 225 RPSMGKTTFGLDFARNCAIRHRL-AVAIFSL--EMSKEQLVMRLLS 267 (886)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCC-eEEEEec--CCCHHHHHHHHHH
Confidence 67999999999998776544322 3445443 3334444444443
No 376
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=84.93 E-value=1.6 Score=37.28 Aligned_cols=15 Identities=53% Similarity=0.685 Sum_probs=12.9
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
--|+||+|||+.+..
T Consensus 47 ~NGSGKSTLakMlaG 61 (267)
T COG4167 47 ENGSGKSTLAKMLAG 61 (267)
T ss_pred cCCCcHhHHHHHHhc
Confidence 569999999999854
No 377
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=84.76 E-value=2.3 Score=37.28 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCCccHHHHHHHHHHHhh-----hcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAR-----EDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
++|.||||++..+..... ....-+..+-++...+..+..++..+.+
T Consensus 25 pPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 889999987666655441 1122344444444444444444444433
No 378
>PRK10037 cell division protein; Provisional
Probab=84.70 E-value=0.72 Score=41.68 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+..-..
T Consensus 10 KGGvGKTT~a~nLA~~La 27 (250)
T PRK10037 10 RGGVGTTSITAALAWSLQ 27 (250)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 699999999988877654
No 379
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=84.44 E-value=0.73 Score=42.01 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=13.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||++..+.....
T Consensus 8 KGGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFA 25 (268)
T ss_pred CCcCcHHHHHHHHHHHHH
Confidence 599999998877765443
No 380
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=84.33 E-value=0.71 Score=39.16 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 10 ~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 10 GSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 78999999999998753
No 381
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=84.31 E-value=4.4 Score=40.35 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=47.8
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHH-----HHHHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDR-VVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEY-----RRASRLY 206 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~-----~~~~~l~ 206 (374)
..|+|||||| ..+.+... -+. ++++.+++..+ ...+.+.+...=... ..+.... ...-.+.
T Consensus 151 ~~gtGKT~lal~~I~~q~~----~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~tiA 226 (507)
T PRK07165 151 DRQTGKTHIALNTIINQKN----TNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHA 226 (507)
T ss_pred CCCCCccHHHHHHHHHhcC----CCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5799999996 45666432 344 48888888754 455555554432111 1111111 1234566
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 045120 207 ERLKNENKILVILANIWKL 225 (374)
Q Consensus 207 ~~L~~~kr~LlVlDdv~~~ 225 (374)
++++.++..|||+||+...
T Consensus 227 Eyfrd~~dVLlv~DdLTr~ 245 (507)
T PRK07165 227 ENISYNDDVLIVFDDLTKH 245 (507)
T ss_pred HHHHhcCceEEEEcChHHH
Confidence 7776558999999999754
No 382
>PRK05636 replicative DNA helicase; Provisional
Probab=84.28 E-value=5 Score=40.30 Aligned_cols=45 Identities=27% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
.+|+||||||..+..+...+......+| |-.-+..++...++...
T Consensus 273 rpg~GKT~~al~~a~~~a~~~g~~v~~f---SlEMs~~ql~~R~ls~~ 317 (505)
T PRK05636 273 RPGVGKSTLALDFMRSASIKHNKASVIF---SLEMSKSEIVMRLLSAE 317 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEE---EeeCCHHHHHHHHHHHh
Confidence 7799999999998876654444433333 44455566666665554
No 383
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=84.26 E-value=11 Score=33.12 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=39.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCe----EEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDR----VVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~----~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
+||.|||...+++.-+.-+-+.|.+ +.|++....+|..++.+.+-..+.
T Consensus 46 p~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~ 98 (293)
T KOG2859|consen 46 PGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLK 98 (293)
T ss_pred CCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHH
Confidence 9999999998888777666666753 688899999998888777766553
No 384
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.20 E-value=0.76 Score=38.87 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+.+..+
T Consensus 7 ~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 7 PPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp -TTSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhh
Confidence 679999999999998764
No 385
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=84.19 E-value=1.3 Score=44.47 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=32.1
Q ss_pred cccccHHHHHHHHHHhhcC--------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEE
Q 045120 123 AFESRVSNLKSTQNALTNA--------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSE 171 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~~--------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 171 (374)
+++--...++++.+||... ++|+||||.++.+.+... |+.+=|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 3444455677777777642 899999999999998643 66666753
No 386
>PF13245 AAA_19: Part of AAA domain
Probab=84.12 E-value=2.1 Score=30.91 Aligned_cols=17 Identities=35% Similarity=0.347 Sum_probs=11.4
Q ss_pred CCCccHHHHH-HHHHHHh
Q 045120 142 NGGIGKTTLA-KEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~ 158 (374)
.+|.|||+++ ..+..-.
T Consensus 18 ~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 8899999554 4444433
No 387
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=84.10 E-value=0.71 Score=39.80 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+||||||+.+....
T Consensus 7 ~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 7 VTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999998853
No 388
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=83.99 E-value=1.3 Score=41.93 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~ 157 (374)
..++|-+..+..++-.+.++ ..|+|||||++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 45789998888876655543 7799999999999753
No 389
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=83.95 E-value=1.1 Score=38.00 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=24.7
Q ss_pred ccccHHHHHHHHHHhhc----C-------CCCccHHHHHHHHHHH
Q 045120 124 FESRVSNLKSTQNALTN----A-------NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~----~-------~gGiGKTtLA~~v~~~ 157 (374)
++|.+..+.++++.+.. + ..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 36777777777776653 2 7799999999999983
No 390
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=83.94 E-value=3.5 Score=38.73 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=84.1
Q ss_pred cccccccHHHHHHHHHHhhcC-------------CCCccHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCH-HHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA-------------NGGIGKTTLAKEFAKQAREDKLFD-RVVFSEVSQTSDI-KKIQGDI 185 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~-------------~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~~i 185 (374)
..+++|-.++-.++-.+|... +.|.|||+|...+..+. ..|. ..+-|......-. .-.++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHH
Confidence 456888888888888887653 88999999998888772 2242 3344444444322 2355666
Q ss_pred HHHhCcCCc-----hhhHHHHHHHHHHHHhc-----CCeEEEEEeCCCCc----cc--cccccCc-----CCCC-----C
Q 045120 186 AEKLGLELS-----EEAEYRRASRLYERLKN-----ENKILVILANIWKL----LD--LETVKIP-----FRND-----S 239 (374)
Q Consensus 186 ~~~l~~~~~-----~~~~~~~~~~l~~~L~~-----~kr~LlVlDdv~~~----~~--~~~l~~~-----~~~~-----T 239 (374)
..++..... ..+-.+....|-..|+. +-+...|+|..+-. .+ +-.+... -|-+ |
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 666643321 12334455666677753 23578888876522 11 1111111 1111 3
Q ss_pred cchhHh------hhhcCCCCceecCCCCHHHHHHHHHHhc
Q 045120 240 RDNNVV------LLSMGSKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 240 R~~~va------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
|-...- ...+..-.++-+++++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 322111 1223333366677788888888888776
No 391
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=83.92 E-value=5.2 Score=35.27 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
..|+|||++|.++......++ ..++|++....
T Consensus 24 ~~G~GKt~~~~~~~~~~~~~g--~~~~y~s~e~~ 55 (224)
T TIGR03880 24 EYGTGKTTFSLQFLYQGLKNG--EKAMYISLEER 55 (224)
T ss_pred CCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCC
Confidence 679999999988876433222 35778877653
No 392
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=83.89 E-value=8.3 Score=37.75 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
.+|+|||++|..+..+......+ .++|++ -.-+..++...++...
T Consensus 202 ~pg~GKT~~al~ia~~~a~~~g~-~v~~fS--lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 202 RPSMGKTTLALNIAENVALREGK-PVLFFS--LEMSAEQLGERLLASK 246 (421)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCC-cEEEEE--CCCCHHHHHHHHHHHH
Confidence 78999999999998665433333 355654 3456677777766654
No 393
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.86 E-value=1.6 Score=44.20 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=31.9
Q ss_pred ccccccccHHHHH---HHHHHhhcC------------------CCCccHHHHHHHHHHHhhhc
Q 045120 120 VYEAFESRVSNLK---STQNALTNA------------------NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 120 ~~~~~vGr~~~~~---~i~~~L~~~------------------~gGiGKTtLA~~v~~~~~~~ 161 (374)
....+.|.|+.++ ++++.|.++ ++|.|||.||+++.....+-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 3456778876555 567777765 88999999999999977654
No 394
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=83.74 E-value=2.4 Score=37.17 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
+=|+||||+++.++...+..+. .++|.--.....+.+..++++
T Consensus 11 iDGaGKTT~~~~L~~~l~~~g~--~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 11 IDGAGKTTQAELLKERLEERGI--KVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCCChHHHHHHHHH
Confidence 5599999999999997765432 445543333333344444433
No 395
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=83.73 E-value=0.74 Score=39.87 Aligned_cols=17 Identities=47% Similarity=0.634 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||||+.+....
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999999998754
No 396
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=83.73 E-value=1.2 Score=40.84 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=31.8
Q ss_pred ccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~ 159 (374)
.+..+-|-|..+.+|.+.+.-+ .+|.|||-||++|.|...
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 3455668899999998887543 779999999999999543
No 397
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=83.71 E-value=46 Score=32.62 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=29.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
.+|+|||++|..+..+....... .++|++.. -+..++...++...
T Consensus 203 ~pg~GKT~~~l~~a~~~a~~~g~-~vl~~SlE--m~~~~i~~R~~~~~ 247 (434)
T TIGR00665 203 RPSMGKTAFALNIAENAAIKEGK-PVAFFSLE--MSAEQLAMRMLSSE 247 (434)
T ss_pred CCCCChHHHHHHHHHHHHHhCCC-eEEEEeCc--CCHHHHHHHHHHHh
Confidence 78999999999987765433232 45566443 45566666665543
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=83.70 E-value=5.7 Score=38.31 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=38.3
Q ss_pred CCCccHHH-HHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcCCchh-hHHHHHHHHHHHHhcCCeEEE
Q 045120 142 NGGIGKTT-LAKEFAKQAREDKLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLELSEE-AEYRRASRLYERLKNENKILV 217 (374)
Q Consensus 142 ~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~L~~~kr~Ll 217 (374)
+-|+|||| ||+..+.-....+ =..+..|+.. ++. ..+=++.-++-++.+..-. +..++...+. .|++ +=+|
T Consensus 211 PTGVGKTTTlAKLAar~~~~~~-~~kVaiITtD-tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~-~l~~--~d~I 285 (407)
T COG1419 211 PTGVGKTTTLAKLAARYVMLKK-KKKVAIITTD-TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE-ALRD--CDVI 285 (407)
T ss_pred CCCCcHHHHHHHHHHHHHhhcc-CcceEEEEec-cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH-Hhhc--CCEE
Confidence 77999998 7776655331122 2345666543 333 3344455666666664432 3333333322 3333 2455
Q ss_pred EEeCC
Q 045120 218 ILANI 222 (374)
Q Consensus 218 VlDdv 222 (374)
.+|-+
T Consensus 286 LVDTa 290 (407)
T COG1419 286 LVDTA 290 (407)
T ss_pred EEeCC
Confidence 55654
No 399
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=83.67 E-value=0.8 Score=38.23 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+.+..
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68999999999998754
No 400
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=83.64 E-value=4.7 Score=39.71 Aligned_cols=80 Identities=18% Similarity=0.351 Sum_probs=42.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.+... -+..+...++... ....+....+..-... ..+.+.. ...-.+.+
T Consensus 171 ~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE 246 (440)
T TIGR01026 171 GSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAE 246 (440)
T ss_pred CCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 679999999999887432 2344445554433 3444443333321111 1111111 12234555
Q ss_pred HHh-cCCeEEEEEeCCCCc
Q 045120 208 RLK-NENKILVILANIWKL 225 (374)
Q Consensus 208 ~L~-~~kr~LlVlDdv~~~ 225 (374)
++. .+++.||++||+...
T Consensus 247 ~frd~G~~Vll~~DslTr~ 265 (440)
T TIGR01026 247 YFRDQGKDVLLLMDSVTRF 265 (440)
T ss_pred HHHHCCCCEEEEEeChHHH
Confidence 553 358999999998643
No 401
>PRK14529 adenylate kinase; Provisional
Probab=83.63 E-value=4.1 Score=36.15 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=38.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeE--EEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRV--VFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~--~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
+.|+||||+|+.+....... |++.- +.-.+..........+.++.. ...-+++-....+.+.|.....--+||
T Consensus 8 ~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~~g~iL 82 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGKNGWLL 82 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCCCcEEE
Confidence 78999999999998865432 22211 111122222222223333322 111233444556666665422345788
Q ss_pred eCCC
Q 045120 220 ANIW 223 (374)
Q Consensus 220 Ddv~ 223 (374)
|+.-
T Consensus 83 DGfP 86 (223)
T PRK14529 83 DGFP 86 (223)
T ss_pred eCCC
Confidence 8753
No 402
>PRK14531 adenylate kinase; Provisional
Probab=83.60 E-value=3.3 Score=35.40 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+++.+....
T Consensus 10 ~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 10 PPGAGKGTQAARLCAAH 26 (183)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 403
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=83.53 E-value=6.1 Score=38.66 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=45.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc--------hhhHHHHHHHHHHHHhcCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS--------EEAEYRRASRLYERLKNEN 213 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~l~~~L~~~k 213 (374)
-+|+||||+|-.+..+......=. +++. |-..+..++...++...+.-.. ...+.+........|.+ .
T Consensus 204 RP~mGKTafalnia~n~a~~~~~~-v~iF--SLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~-~ 279 (435)
T COG0305 204 RPGMGKTALALNIALNAAADGRKP-VAIF--SLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSE-A 279 (435)
T ss_pred CCCCChHHHHHHHHHHHHHhcCCC-eEEE--EccCCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhh-C
Confidence 779999999999888776532222 3333 3445566666666665543211 12233344555556665 4
Q ss_pred eEEEEEeCCCCc
Q 045120 214 KILVILANIWKL 225 (374)
Q Consensus 214 r~LlVlDdv~~~ 225 (374)
+ |.+||....
T Consensus 280 ~--i~IdD~~~~ 289 (435)
T COG0305 280 P--IFIDDTPGL 289 (435)
T ss_pred C--eeecCCCcC
Confidence 5 888887654
No 404
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=83.52 E-value=1.3 Score=40.29 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
.+|+|||+++.++...-. .+...++||+....
T Consensus 31 ~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~ 62 (260)
T COG0467 31 PPGTGKTIFALQFLYEGA--REGEPVLYVSTEES 62 (260)
T ss_pred CCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCC
Confidence 889999999999887554 34778999987755
No 405
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=83.45 E-value=1 Score=33.24 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||++..+.....
T Consensus 7 ~~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 7 KGGVGKTTLAANLAAALA 24 (99)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999888654
No 406
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=83.20 E-value=5.3 Score=37.27 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=37.7
Q ss_pred HHHHHHHhhcC-------CCCccHHHHHHHHHHHhh-hcCCC-------CeEEEEEeCCC-CCHHHHHHHHHHHhCcC
Q 045120 131 LKSTQNALTNA-------NGGIGKTTLAKEFAKQAR-EDKLF-------DRVVFSEVSQT-SDIKKIQGDIAEKLGLE 192 (374)
Q Consensus 131 ~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~-~~~~F-------~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 192 (374)
-+-|-+++..+ .||+|||||+..++=... -++-| ..+++|++... .++..=++.+..+++.+
T Consensus 79 P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 79 PQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred hhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 34455555555 899999999876643321 12223 35677776554 34555566777777765
No 407
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=83.16 E-value=0.81 Score=38.84 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 9 ~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 9 PSGAGKDTLLDYARARL 25 (179)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998754
No 408
>PRK13947 shikimate kinase; Provisional
Probab=83.15 E-value=0.86 Score=38.30 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.+...
T Consensus 9 ~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 889999999999988543
No 409
>PRK10646 ADP-binding protein; Provisional
Probab=83.14 E-value=0.77 Score=38.13 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 045120 142 NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~ 161 (374)
-=|.|||||++.+.....+.
T Consensus 36 dLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 36 DLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 34999999999999866443
No 410
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=83.02 E-value=1.3 Score=40.29 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=19.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
-||+||||++..+....... . .++-+..-
T Consensus 10 KGGvGKTT~a~nLA~~La~~-G--rVLliD~D 38 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAYSND-H--RVLVIGCD 38 (264)
T ss_pred CCCCcHHHHHHHHhcccCCC-C--EEEEEeEc
Confidence 59999999999988755422 2 34445443
No 411
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.01 E-value=2.2 Score=38.23 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 124 FESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
+-|.+..+++|.+-+.-+ +.|.|||-||+.|+++. .+.|+-||..
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs 215 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS 215 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH
Confidence 335677777777665432 88999999999999844 3556777643
No 412
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=82.97 E-value=0.9 Score=38.16 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||||+.+....
T Consensus 3 ~sGsGKSTla~~la~~l 19 (163)
T PRK11545 3 VSGSGKSAVASEVAHQL 19 (163)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 46999999999998855
No 413
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=82.97 E-value=0.94 Score=41.37 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||++..+.....
T Consensus 10 KGGVGKTT~~~nLA~~la 27 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFA 27 (270)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 599999998888776554
No 414
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=82.94 E-value=0.93 Score=41.67 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+..-..
T Consensus 9 KGGVGKTT~a~nLA~~La 26 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALA 26 (279)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 599999999888777554
No 415
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=82.90 E-value=0.94 Score=40.61 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 9 KGGvGKTt~a~~LA~~la 26 (251)
T TIGR01969 9 KGGTGKTTITANLGVALA 26 (251)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 699999999988776543
No 416
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=82.87 E-value=12 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=25.0
Q ss_pred ccccccHHHHHHHHHHhhc----C------------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN----A------------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~----~------------~gGiGKTtLA~~v~~~~ 158 (374)
..++|-.-..+.|++.|.. + ..|+|||.+++.+.++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3466766555555555542 2 78999999888887763
No 417
>PRK06321 replicative DNA helicase; Provisional
Probab=82.63 E-value=7.9 Score=38.54 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=28.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
-+|+|||++|..++.+....... .++|++ -.-+..++...++..
T Consensus 234 rPgmGKTafal~ia~~~a~~~g~-~v~~fS--LEMs~~ql~~Rlla~ 277 (472)
T PRK06321 234 RPAMGKTALALNIAENFCFQNRL-PVGIFS--LEMTVDQLIHRIICS 277 (472)
T ss_pred CCCCChHHHHHHHHHHHHHhcCC-eEEEEe--ccCCHHHHHHHHHHh
Confidence 67999999999998876433332 345554 334555666665543
No 418
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=82.58 E-value=4.5 Score=35.36 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 7 ~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 68999999999998643
No 419
>PRK14974 cell division protein FtsY; Provisional
Probab=82.58 E-value=7.3 Score=36.91 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=40.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH--HHHHHHHHHHhCcCCch----hhHHHHH-HHHHHHHhcCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI--KKIQGDIAEKLGLELSE----EAEYRRA-SRLYERLKNENK 214 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~----~~~~~~~-~~l~~~L~~~kr 214 (374)
+.|+||||++..+...... ..+. ++.+. ...+.. ..-++.....++.+... .+..... +.+...... ..
T Consensus 148 ~~GvGKTTtiakLA~~l~~-~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~-~~ 223 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKK-NGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR-GI 223 (336)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC-CC
Confidence 8999999988887765442 2232 33333 333433 33355566777654321 1222222 222222223 23
Q ss_pred EEEEEeCCC
Q 045120 215 ILVILANIW 223 (374)
Q Consensus 215 ~LlVlDdv~ 223 (374)
=+|++|-.-
T Consensus 224 DvVLIDTaG 232 (336)
T PRK14974 224 DVVLIDTAG 232 (336)
T ss_pred CEEEEECCC
Confidence 388999874
No 420
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.49 E-value=11 Score=34.64 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=39.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH--HHHHHHHHHhCcCCc----hhhHHH-HHHHHHHHHhcCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK--KIQGDIAEKLGLELS----EEAEYR-RASRLYERLKNENK 214 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~----~~~~~~-~~~~l~~~L~~~kr 214 (374)
++|+||||++..+....... . ..+..++. +.+... .-+....+..+.+.. ..+... ....+.....+ ..
T Consensus 80 ~~G~GKTTt~akLA~~l~~~-g-~~V~li~~-D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~-~~ 155 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQ-G-KSVLLAAG-DTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR-NI 155 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhc-C-CEEEEEeC-CCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC-CC
Confidence 89999999988887655422 1 24455543 334332 233344555553321 112222 22334333334 45
Q ss_pred EEEEEeCCC
Q 045120 215 ILVILANIW 223 (374)
Q Consensus 215 ~LlVlDdv~ 223 (374)
=++++|-.-
T Consensus 156 D~ViIDT~G 164 (272)
T TIGR00064 156 DVVLIDTAG 164 (272)
T ss_pred CEEEEeCCC
Confidence 678888763
No 421
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=82.49 E-value=2.6 Score=40.44 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.7
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.||+|||+|.+.+.+..+.
T Consensus 30 ~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 30 PAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCCCChhHHHHHHHHHhcc
Confidence 9999999999999986653
No 422
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=82.43 E-value=2.1 Score=36.57 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=25.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~ 187 (374)
.-|+||||+++.+.+.....++ . +.++.... .......++++.
T Consensus 4 iDGsGKtT~~~~L~~~l~~~~~-~--~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 4 IDGSGKTTQIRLLAEALKEKGY-K--VIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp STTSSHHHHHHHHHHHHHHTTE-E--EEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCC-c--ccccCCCCCChHHHHHHHHHh
Confidence 4599999999999997764432 2 23332222 224455555555
No 423
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=82.37 E-value=1 Score=41.30 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 045120 142 NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~ 161 (374)
-||+||||++..+.....-+
T Consensus 8 KGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CCcCcHHHHHHHHHHHHHHC
Confidence 59999999988887765533
No 424
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=82.31 E-value=0.97 Score=38.52 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 11 ~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998743
No 425
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.28 E-value=1.3 Score=37.10 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcC------CCCccHHHHHHHHHHHh
Q 045120 129 SNLKSTQNALTNA------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 129 ~~~~~i~~~L~~~------~gGiGKTtLA~~v~~~~ 158 (374)
..+++|.+.|... ..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3466777777666 78999999999998754
No 426
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=82.16 E-value=1.2 Score=37.79 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.7
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
..|.||||||..++.....
T Consensus 31 LSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 31 LSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 8999999999999986653
No 427
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=82.05 E-value=0.84 Score=41.83 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+..-..
T Consensus 10 KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 10 KGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 599999999887766543
No 428
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=81.99 E-value=0.99 Score=35.14 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||.+.+.+...
T Consensus 7 ~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 7 DSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp STTSSHHHHHHHHHHSS-
T ss_pred cCCCCHHHHHHHHhcCCC
Confidence 579999999999987543
No 429
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=81.82 E-value=1.1 Score=40.85 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 8 KGGvGKTT~a~nLA~~la 25 (267)
T cd02032 8 KGGIGKSTTSSNLSVALA 25 (267)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 599999998887766544
No 430
>PRK05595 replicative DNA helicase; Provisional
Probab=81.76 E-value=57 Score=32.22 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=29.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
.+|+|||++|..+..+...+... .++|++. .-+..++...++...
T Consensus 209 rpg~GKT~~al~ia~~~a~~~g~-~vl~fSl--Ems~~~l~~R~~a~~ 253 (444)
T PRK05595 209 RPSMGKTTFALNIAEYAALREGK-SVAIFSL--EMSKEQLAYKLLCSE 253 (444)
T ss_pred cCCCChHHHHHHHHHHHHHHcCC-cEEEEec--CCCHHHHHHHHHHHh
Confidence 77999999999988764433333 3445543 445666666666554
No 431
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=81.66 E-value=1.1 Score=36.76 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 7 ~~GsGKstla~~la~~l 23 (154)
T cd00464 7 MMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 432
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=81.56 E-value=2.2 Score=34.84 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
..|+|||||++.+.+....+ .+...+..+...
T Consensus 8 ~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp STTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 46899999999999987543 455666666655
No 433
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.55 E-value=7.2 Score=38.20 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+||||++..+.....
T Consensus 108 ~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 899999999888876544
No 434
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=81.46 E-value=1.1 Score=40.98 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||++..+..-..
T Consensus 9 KGGVGKTT~~~nLA~~La 26 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLA 26 (274)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 599999999887766543
No 435
>PRK13975 thymidylate kinase; Provisional
Probab=81.44 E-value=1.1 Score=38.65 Aligned_cols=18 Identities=44% Similarity=0.451 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 10 ~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999998654
No 436
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=81.42 E-value=1.1 Score=40.96 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+..-..
T Consensus 9 KGGVGKTT~a~nLA~~La 26 (273)
T PRK13232 9 KGGIGKSTTTQNLTAALS 26 (273)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 599999998888766543
No 437
>PRK04040 adenylate kinase; Provisional
Probab=81.29 E-value=1.1 Score=38.65 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+++.+....
T Consensus 10 ~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 10 VPGVGKTTVLNKALEKL 26 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998854
No 438
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=81.26 E-value=1 Score=39.67 Aligned_cols=18 Identities=50% Similarity=0.671 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||+|+.++....
T Consensus 16 ~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 16 GSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 678999999999998554
No 439
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=81.18 E-value=1.1 Score=38.36 Aligned_cols=18 Identities=50% Similarity=0.704 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+||||||+.+.....
T Consensus 7 ~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999988654
No 440
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=81.14 E-value=0.97 Score=38.37 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=13.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
-||+||||+|..+..-.
T Consensus 8 kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 8 KGGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999988876643
No 441
>PRK00889 adenylylsulfate kinase; Provisional
Probab=81.09 E-value=1.1 Score=37.96 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+||||+|+.+.....
T Consensus 12 ~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 12 LSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 789999999999998654
No 442
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.02 E-value=5 Score=36.70 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.||+||+||++.+..
T Consensus 39 ~~GsGr~sl~rLaa~ 53 (268)
T PF12780_consen 39 VGGSGRQSLARLAAF 53 (268)
T ss_dssp TTTSCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHH
Confidence 999999999998776
No 443
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=80.79 E-value=1.3 Score=39.72 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
-||+||||+|..+.......+ + .++-|+..
T Consensus 10 KGGvGKTt~a~nla~~la~~g-~-~VlliD~D 39 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLG-E-PVLAIDLD 39 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCC-C-cEEEEeCC
Confidence 699999999998877654322 2 35555544
No 444
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=80.78 E-value=6.8 Score=38.22 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||.||..+...
T Consensus 217 p~GTGKThla~~l~~~ 232 (449)
T TIGR02688 217 PKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCCCCHHHHHHHHhHH
Confidence 8899999999998776
No 445
>PRK13949 shikimate kinase; Provisional
Probab=80.77 E-value=1.2 Score=37.67 Aligned_cols=18 Identities=44% Similarity=0.556 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+|||||++.+.+...
T Consensus 9 ~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 9 YMGAGKTTLGKALARELG 26 (169)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 789999999999998654
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.71 E-value=6.5 Score=39.13 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=28.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCcC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD--IKKIQGDIAEKLGLE 192 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~ 192 (374)
+-|+||||++..+......+..-..+..|.. ..+. ..+-+....+.++.+
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCC
Confidence 7799999999998876543322223444543 3333 233344455555544
No 447
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=80.41 E-value=1.7 Score=39.32 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=19.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSE 171 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 171 (374)
-||+||||++..+.--.. ..|..++.-+
T Consensus 10 KGGtGKTTva~~la~~l~--~~~~~~l~Dc 37 (284)
T COG1149 10 KGGTGKTTVAANLAVLLG--DKYKLVLADC 37 (284)
T ss_pred CCCCChhhHHHHHHHHhc--cccceEEEec
Confidence 699999999988876433 4466555543
No 448
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=80.28 E-value=2.5 Score=40.25 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=29.6
Q ss_pred cccccccHHHHHH---HHHHhhcC-----------CCCccHHHHHHHHHHHhhhc
Q 045120 121 YEAFESRVSNLKS---TQNALTNA-----------NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 121 ~~~~vGr~~~~~~---i~~~L~~~-----------~gGiGKTtLA~~v~~~~~~~ 161 (374)
...+||..+..+. +++++... ++|.|||+||..+.......
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 3468998766654 57777665 88999999999999966533
No 449
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.15 E-value=1.7 Score=36.70 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSE 171 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 171 (374)
..|+||+||.+.+|.++.+. ...+||.
T Consensus 45 ~SG~GKStllr~LYaNY~~d---~G~I~v~ 71 (235)
T COG4778 45 PSGSGKSTLLRSLYANYLPD---EGQILVR 71 (235)
T ss_pred CCCCcHHHHHHHHHhccCCC---CceEEEE
Confidence 88999999999999987754 3577774
No 450
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=80.15 E-value=1.3 Score=35.84 Aligned_cols=17 Identities=47% Similarity=0.602 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||+|+.+....
T Consensus 7 ~~GsGKst~a~~la~~~ 23 (147)
T cd02020 7 PAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999999998754
No 451
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=80.07 E-value=4.9 Score=40.69 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=48.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHHH----hCcC----------CchhhHHH------
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD-IKKIQGDIAEK----LGLE----------LSEEAEYR------ 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~----l~~~----------~~~~~~~~------ 200 (374)
..|+|||+|.+++.+.. +-|.++++-++...+ +.+++.+.-+. ++.+ ..+++...
T Consensus 230 g~G~GKT~l~~~lak~~----~adivVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~y 305 (578)
T TIGR01043 230 PFGSGKTVTQHQLAKWS----DADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIY 305 (578)
T ss_pred CCCCCHHHHHHHHHhcC----CCCEEEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHH
Confidence 56999999999887632 357889998887753 45555554221 1111 11222211
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045120 201 RASRLYERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 201 ~~~~l~~~L~~-~kr~LlVlDdv~~~ 225 (374)
..-.+.+++++ ++..||+.|++...
T Consensus 306 tg~TiAEYfRD~G~~Vllm~DS~sR~ 331 (578)
T TIGR01043 306 TGITIAEYFRDMGYDVALMADSTSRW 331 (578)
T ss_pred HHHHHHHHHHHCCCCEEEEecChhHH
Confidence 12346666653 58999999998643
No 452
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=80.04 E-value=3.5 Score=36.76 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=30.9
Q ss_pred ccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhh
Q 045120 122 EAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~ 159 (374)
-.+||.|..++++...+... ..|.|||||..-+|...-
T Consensus 24 lgyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v 71 (336)
T KOG1547|consen 24 LGYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHV 71 (336)
T ss_pred cccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHH
Confidence 46899999999997777654 679999999988887543
No 453
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=80.00 E-value=1.6 Score=34.42 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.||+||||++..+.....
T Consensus 7 kgG~GKTt~a~~la~~l~ 24 (116)
T cd02034 7 KGGVGKTTIAALLARYLA 24 (116)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 699999999999988654
No 454
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=79.85 E-value=1.4 Score=36.24 Aligned_cols=17 Identities=47% Similarity=0.487 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 4 ~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHhc
Confidence 68999999999999854
No 455
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=79.83 E-value=4.1 Score=36.58 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.||+||||.|..+.....
T Consensus 11 KGGvGKSt~a~~la~~l~ 28 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKA 28 (241)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 799999999988776543
No 456
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=79.82 E-value=6.9 Score=41.71 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=53.6
Q ss_pred cccccHHHHHHHHHHhhcC-----------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTNA-----------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDI 185 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~~-----------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 185 (374)
.++|-++.+..|-+.+... +-|+|||-||+.+..-.- +..+..+-+++| +..+ +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDms------e~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMS------EFQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechh------hhhh-h
Confidence 4667777777777766532 669999999999987331 223333444333 3333 3
Q ss_pred HHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 186 AEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 186 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
.+.++.+..- -..+....|.+.++..-...|+||||...
T Consensus 634 skligsp~gy-vG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 634 SKLIGSPPGY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhccCCCccc-ccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 3333332110 01112246777777734568889999855
No 457
>PRK14532 adenylate kinase; Provisional
Probab=79.81 E-value=1.3 Score=37.97 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|+.+....
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998643
No 458
>PRK13976 thymidylate kinase; Provisional
Probab=79.68 E-value=3.9 Score=35.93 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=16.3
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.-|+||||+++.++.....
T Consensus 8 iDGsGKsTq~~~L~~~L~~ 26 (209)
T PRK13976 8 IDGSGKTTQSRLLAEYLSD 26 (209)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 5699999999999987654
No 459
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=79.64 E-value=1.2 Score=36.54 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||++.+....
T Consensus 9 ~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 9 PSGSGKTTLAQALNGEE 25 (143)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 56999999999997744
No 460
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=79.61 E-value=1.5 Score=39.39 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+|||||+..+..-..
T Consensus 10 kGGvG~TTltAnLA~aL~ 27 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALA 27 (243)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 699999999988877544
No 461
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.53 E-value=7.5 Score=32.55 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.-|.|||||++.+....
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 35 PSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 67999999999998753
No 462
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=79.50 E-value=3.1 Score=39.33 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=33.2
Q ss_pred cccccccHHHHHH---HHHHhhcC-----------CCCccHHHHHHHHHHHhhhcCCC
Q 045120 121 YEAFESRVSNLKS---TQNALTNA-----------NGGIGKTTLAKEFAKQAREDKLF 164 (374)
Q Consensus 121 ~~~~vGr~~~~~~---i~~~L~~~-----------~gGiGKTtLA~~v~~~~~~~~~F 164 (374)
...+||-.+..+. |++++.++ ++|.|||.||..+....-..-+|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 3468897766553 67777765 88999999999999976655555
No 463
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=79.48 E-value=1.5 Score=38.46 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||++..+..-..
T Consensus 8 KGGvGKTt~~~nLA~~la 25 (212)
T cd02117 8 KGGIGKSTTSQNLSAALA 25 (212)
T ss_pred CCcCcHHHHHHHHHHHHH
Confidence 599999998877766544
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=79.45 E-value=1.2 Score=38.23 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||++.+...
T Consensus 10 ~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 10 PSGSGKDSLLAALRQR 25 (186)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 7899999999999764
No 465
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=79.44 E-value=1.2 Score=36.58 Aligned_cols=20 Identities=45% Similarity=0.511 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 045120 142 NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~ 161 (374)
-=|.|||||++.+.....+.
T Consensus 33 dLGAGKTtf~rgi~~~Lg~~ 52 (149)
T COG0802 33 DLGAGKTTLVRGIAKGLGVD 52 (149)
T ss_pred CCcCChHHHHHHHHHHcCCC
Confidence 34999999999998865543
No 466
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=79.35 E-value=1.3 Score=37.01 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||++.+...
T Consensus 7 ~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 7 GPSTGKTTLIEALAAR 22 (163)
T ss_dssp -TTSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHc
Confidence 4689999999999875
No 467
>PRK06761 hypothetical protein; Provisional
Probab=79.27 E-value=1.9 Score=39.67 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=16.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+++.+.+...
T Consensus 11 ~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILS 28 (282)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 789999999999998654
No 468
>PRK14530 adenylate kinase; Provisional
Probab=79.11 E-value=1.4 Score=38.68 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 11 ~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 11 APGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 469
>PRK13768 GTPase; Provisional
Probab=79.09 E-value=1.6 Score=39.60 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.||+||||++..+.....
T Consensus 10 ~~G~GKTt~~~~~~~~l~ 27 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLE 27 (253)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 799999999988876554
No 470
>PRK08840 replicative DNA helicase; Provisional
Probab=79.06 E-value=4.5 Score=40.16 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
.+|+|||++|..+..+...+... .++|.+ -.-+..++...++....
T Consensus 225 rPg~GKTafalnia~~~a~~~~~-~v~~fS--lEMs~~ql~~Rlla~~s 270 (464)
T PRK08840 225 RPSMGKTTFAMNLCENAAMDQDK-PVLIFS--LEMPAEQLMMRMLASLS 270 (464)
T ss_pred CCCCchHHHHHHHHHHHHHhCCC-eEEEEe--ccCCHHHHHHHHHHhhC
Confidence 77999999998887766543333 344443 34566777777776653
No 471
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=79.04 E-value=1.3 Score=34.16 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||++..+.....
T Consensus 8 kgg~gkt~~~~~la~~~~ 25 (106)
T cd03111 8 KGGVGATTLAANLAVALA 25 (106)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 599999998888766544
No 472
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=79.02 E-value=1.5 Score=40.58 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||++..+.....
T Consensus 8 KGGVGKTTta~nLA~~La 25 (290)
T CHL00072 8 KGGIGKSTTSCNISIALA 25 (290)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 599999999888776554
No 473
>PRK07004 replicative DNA helicase; Provisional
Probab=79.02 E-value=11 Score=37.52 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
-+|+|||++|..+..+........ ++|+ |-.-+..++...++...
T Consensus 221 rpg~GKT~~al~ia~~~a~~~~~~-v~~f--SlEM~~~ql~~R~la~~ 265 (460)
T PRK07004 221 RPSMGKTAFSMNIGEYVAVEYGLP-VAVF--SMEMPGTQLAMRMLGSV 265 (460)
T ss_pred CCCCCccHHHHHHHHHHHHHcCCe-EEEE--eCCCCHHHHHHHHHHhh
Confidence 679999999999877655443343 3344 44556667777776554
No 474
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=78.97 E-value=1.5 Score=39.45 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+..-..
T Consensus 10 kGGvGKTt~a~~lA~~la 27 (261)
T TIGR01968 10 KGGVGKTTTTANLGTALA 27 (261)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 699999999988876544
No 475
>PRK13946 shikimate kinase; Provisional
Probab=78.96 E-value=1.5 Score=37.61 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+++.+.+..
T Consensus 18 ~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 18 LMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 88999999999999865
No 476
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=78.90 E-value=4.4 Score=34.60 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+-|+||||+++.+.+...
T Consensus 8 ~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 8 IDGAGKTTLIELLAERLE 25 (200)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 669999999999988764
No 477
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=78.90 E-value=10 Score=35.12 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=49.8
Q ss_pred ccccHHHHHHHHHHhhcC----------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 124 FESRVSNLKSTQNALTNA----------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~~----------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
++|-.-..+.|+..+... ..|+||...++.+.++....+-= .........
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fva 149 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFVA 149 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhhh
Confidence 556555555566655432 77999999999998875432110 011111122
Q ss_pred HhCcCCch---hhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 188 KLGLELSE---EAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 188 ~l~~~~~~---~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
.+.-+... .-.+++...++..++..+|-|+|+|++...
T Consensus 150 t~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 150 TLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 22211111 112445566666666568999999999854
No 478
>PRK05973 replicative DNA helicase; Provisional
Probab=78.90 E-value=5.3 Score=35.84 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=24.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
.+|+|||+||.++....... . ..++|++...+ ..++...
T Consensus 72 ~PG~GKT~lalqfa~~~a~~-G-e~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 72 RPGHGKTLLGLELAVEAMKS-G-RTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCCCHHHHHHHHHHHHHhc-C-CeEEEEEEeCC--HHHHHHH
Confidence 78999999999886654322 2 34666655443 3444444
No 479
>PRK08006 replicative DNA helicase; Provisional
Probab=78.83 E-value=13 Score=37.02 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=29.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
-+|+|||++|..+..+....... .+++. |-.-+..++...++...
T Consensus 232 rPgmGKTafalnia~~~a~~~g~-~V~~f--SlEM~~~ql~~Rlla~~ 276 (471)
T PRK08006 232 RPSMGKTTFAMNLCENAAMLQDK-PVLIF--SLEMPGEQIMMRMLASL 276 (471)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-eEEEE--eccCCHHHHHHHHHHHh
Confidence 77999999999988765433323 34444 34456677777777654
No 480
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=78.62 E-value=1.2 Score=35.81 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||++.+++.
T Consensus 4 ~~gsGKstl~~~l~~~ 19 (163)
T cd00880 4 RTNAGKSSLLNALLGQ 19 (163)
T ss_pred CCCCCHHHHHHHHhCc
Confidence 5799999999999875
No 481
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=78.60 E-value=8.9 Score=35.66 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.+|+|||||+..+......
T Consensus 42 ~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 42 TPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 7899999999998876543
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=78.51 E-value=1.3 Score=37.54 Aligned_cols=16 Identities=38% Similarity=0.709 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||||+.+.+.
T Consensus 9 ~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 9 PSGVGKSTLVKALLEE 24 (180)
T ss_pred CCCCCHHHHHHHHHcc
Confidence 6799999999999873
No 483
>PRK06904 replicative DNA helicase; Validated
Probab=78.40 E-value=6.1 Score=39.36 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
-+|+|||++|..+..+....... .++|+ |-.-+..++...++....
T Consensus 229 rPg~GKTafalnia~~~a~~~g~-~Vl~f--SlEMs~~ql~~Rlla~~s 274 (472)
T PRK06904 229 RPSMGKTTFAMNLCENAAMASEK-PVLVF--SLEMPAEQIMMRMLASLS 274 (472)
T ss_pred CCCCChHHHHHHHHHHHHHhcCC-eEEEE--eccCCHHHHHHHHHHhhC
Confidence 77999999998887765433222 34454 445667777777776653
No 484
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=78.34 E-value=1.2 Score=38.97 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|+|||||+..+.++..
T Consensus 13 ~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 13 DGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred CCCccHHHHHHHHhcCcC
Confidence 899999999999987643
No 485
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=78.31 E-value=2.8 Score=40.64 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+..-..
T Consensus 115 KGGVGKTT~a~nLA~~LA 132 (388)
T PRK13705 115 KGGVYKTSVSVHLAQDLA 132 (388)
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 799999999988877554
No 486
>PRK03846 adenylylsulfate kinase; Provisional
Probab=78.18 E-value=1.5 Score=38.02 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||+.+....
T Consensus 32 ~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 32 LSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 66999999999998854
No 487
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=78.10 E-value=5.1 Score=34.35 Aligned_cols=19 Identities=42% Similarity=0.419 Sum_probs=16.3
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.-|+||||+++.+.+....
T Consensus 11 ~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 11 IDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 6799999999999987654
No 488
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=78.10 E-value=3.2 Score=40.21 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
-||+||||+|..+..-....+ . .++-|......+
T Consensus 113 KGGvGKTT~a~nLA~~La~~G-~-rVLlID~DpQ~~ 146 (387)
T TIGR03453 113 KGGSGKTTTAAHLAQYLALRG-Y-RVLAIDLDPQAS 146 (387)
T ss_pred CCCcCHHHHHHHHHHHHHhcC-C-CEEEEecCCCCC
Confidence 899999999988876544322 1 344554444333
No 489
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=78.08 E-value=1.6 Score=36.97 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||+.+.+..
T Consensus 12 ~~GaGKStl~~~La~~l 28 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 78999999999999854
No 490
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=77.94 E-value=2.9 Score=36.12 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 49 ~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 49 YTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCCCHHHHHHHHhcch
Confidence 68999999999988764
No 491
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=77.85 E-value=1.3 Score=36.01 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=24.2
Q ss_pred cccHHHHHHHHHHhhc----C-------CCCccHHHHHHHHHHHhh
Q 045120 125 ESRVSNLKSTQNALTN----A-------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 125 vGr~~~~~~i~~~L~~----~-------~gGiGKTtLA~~v~~~~~ 159 (374)
||....++++.+.+.. . ..|+||+++|+.++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4666666666666543 1 779999999999988543
No 492
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=77.81 E-value=1.6 Score=37.33 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||+|+.+...
T Consensus 7 ~pGsGKst~a~~La~~ 22 (194)
T cd01428 7 PPGSGKGTQAERLAKK 22 (194)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6899999999999875
No 493
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=77.62 E-value=3.2 Score=40.20 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=19.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSE 171 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 171 (374)
-||+||||++.++..-....+ + .++-|+
T Consensus 115 KGGVGKTTta~nLA~~LA~~G-~-rVLlID 142 (387)
T PHA02519 115 KGGVYKTSSAVHTAQWLALQG-H-RVLLIE 142 (387)
T ss_pred CCCCcHHHHHHHHHHHHHhCC-C-cEEEEe
Confidence 899999999988877554333 2 344555
No 494
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=77.47 E-value=1.6 Score=40.45 Aligned_cols=17 Identities=47% Similarity=0.647 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||+|+.+....
T Consensus 10 ~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 10 VPGSGKSTWAREFAAKN 26 (300)
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 78999999999998743
No 495
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=77.43 E-value=4.5 Score=34.25 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=38.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchh----hHHHHHHHHHHHHhcCCeEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEE----AEYRRASRLYERLKNENKILV 217 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~~L~~~kr~Ll 217 (374)
..|+||||+|..+...... ..+++.-...++ .+..+.|........... ...++...+.....+ .-++
T Consensus 9 ~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~--~~~V 80 (170)
T PRK05800 9 GARSGKSRFAERLAAQSGL-----QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP--GRCV 80 (170)
T ss_pred CCCccHHHHHHHHHHHcCC-----CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC--CCEE
Confidence 6799999999998764321 234444333333 345555544443221111 122233334333333 2378
Q ss_pred EEeCCC
Q 045120 218 ILANIW 223 (374)
Q Consensus 218 VlDdv~ 223 (374)
++|.+.
T Consensus 81 lID~Lt 86 (170)
T PRK05800 81 LVDCLT 86 (170)
T ss_pred EehhHH
Confidence 888874
No 496
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=77.35 E-value=2.7 Score=40.92 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=20.9
Q ss_pred HHHHHHhhcC--------CCCccHHHHHHHHHHHhh
Q 045120 132 KSTQNALTNA--------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 132 ~~i~~~L~~~--------~gGiGKTtLA~~v~~~~~ 159 (374)
+++.+.|.+. .+|.||||+|+++..-..
T Consensus 253 dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 253 DKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred HHHHHHHHhhhcceEEecCCCCChhHHHHHHHHHHH
Confidence 4566666543 889999999999977544
No 497
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=77.06 E-value=1.9 Score=36.30 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 10 ~~GsGKst~~~~la~~l 26 (171)
T PRK03731 10 ARGCGKTTVGMALAQAL 26 (171)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 498
>PRK14527 adenylate kinase; Provisional
Probab=77.01 E-value=1.8 Score=37.25 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|+||||+|+.+.....
T Consensus 14 ~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 14 PPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999987554
No 499
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=76.84 E-value=8.8 Score=36.58 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
.+|+|||.||..++.+..-.......++++.....
T Consensus 9 ~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l 43 (352)
T PF09848_consen 9 GAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL 43 (352)
T ss_pred cCCcCHHHHHHHHHHHhhccccCCceEEEEecchH
Confidence 68999999999999977222345566777666543
No 500
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=76.78 E-value=2.6 Score=41.13 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=26.7
Q ss_pred cccccHHHHHHHHHHhhc-------------------C------CCCccHHHHHHHHHHHh
Q 045120 123 AFESRVSNLKSTQNALTN-------------------A------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~-------------------~------~gGiGKTtLA~~v~~~~ 158 (374)
.++|.+..++.+...+.. . +.|+|||+||+.+....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 478988888877544410 1 78999999999998744
Done!