Query 045120
Match_columns 374
No_of_seqs 264 out of 2341
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 17:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-36 6.4E-41 303.9 20.0 234 125-368 131-419 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.5E-31 2.2E-35 271.1 9.0 226 124-365 130-400 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-29 1.5E-33 272.0 15.3 242 117-366 119-409 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 5.5E-26 1.9E-30 230.0 12.6 235 118-364 120-407 (591)
5 2qen_A Walker-type ATPase; unk 99.3 1.8E-11 6.1E-16 114.8 14.2 181 117-306 7-247 (350)
6 1w5s_A Origin recognition comp 99.2 3.7E-10 1.3E-14 108.4 15.2 181 122-305 22-266 (412)
7 2fna_A Conserved hypothetical 99.1 2.5E-10 8.5E-15 107.1 10.4 178 118-306 9-251 (357)
8 2qby_A CDC6 homolog 1, cell di 98.9 4.8E-09 1.7E-13 99.4 10.9 182 121-304 19-244 (386)
9 2qby_B CDC6 homolog 3, cell di 98.9 1.7E-08 5.7E-13 95.9 14.0 177 122-305 20-246 (384)
10 1njg_A DNA polymerase III subu 98.9 2E-08 6.8E-13 88.3 13.0 178 120-306 21-229 (250)
11 2v1u_A Cell division control p 98.8 5.4E-08 1.9E-12 92.2 13.4 172 122-299 19-243 (387)
12 2chg_A Replication factor C sm 98.7 2.2E-07 7.7E-12 80.4 13.9 169 120-305 15-204 (226)
13 1fnn_A CDC6P, cell division co 98.5 3.2E-06 1.1E-10 80.0 16.9 170 122-293 17-227 (389)
14 1sxj_B Activator 1 37 kDa subu 98.4 2.3E-06 7.7E-11 78.9 11.9 171 120-306 19-211 (323)
15 3qfl_A MLA10; coiled-coil, (CC 98.3 3.4E-06 1.2E-10 65.7 8.5 66 8-75 2-79 (115)
16 3te6_A Regulatory protein SIR3 98.1 3E-05 1E-09 71.4 12.0 151 123-274 21-212 (318)
17 1iqp_A RFCS; clamp loader, ext 98.1 1E-05 3.5E-10 74.6 8.7 162 121-305 24-212 (327)
18 1jr3_A DNA polymerase III subu 98.0 4E-05 1.4E-09 72.0 12.1 176 121-305 15-221 (373)
19 1jbk_A CLPB protein; beta barr 97.8 4.6E-05 1.6E-09 63.9 8.4 39 121-159 21-68 (195)
20 2chq_A Replication factor C sm 97.8 0.00013 4.3E-09 66.9 11.4 163 121-303 16-202 (319)
21 1hqc_A RUVB; extended AAA-ATPa 97.7 0.00041 1.4E-08 63.7 13.4 52 253-306 161-212 (324)
22 2p65_A Hypothetical protein PF 97.6 0.00021 7.3E-09 59.6 9.2 38 121-158 21-67 (187)
23 1sxj_A Activator 1 95 kDa subu 97.6 0.00012 4.1E-09 72.2 8.7 174 119-306 36-254 (516)
24 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.0019 6.6E-08 57.2 14.4 164 121-305 5-222 (262)
25 3pvs_A Replication-associated 97.4 0.0013 4.5E-08 63.5 13.0 160 119-303 23-213 (447)
26 3uk6_A RUVB-like 2; hexameric 97.2 0.0018 6.2E-08 60.5 10.6 48 254-303 253-301 (368)
27 3h4m_A Proteasome-activating n 97.2 0.0017 5.9E-08 58.4 9.8 164 119-305 14-231 (285)
28 1sxj_D Activator 1 41 kDa subu 97.1 0.0012 4.1E-08 61.3 8.7 177 120-304 35-234 (353)
29 4b4t_J 26S protease regulatory 97.0 0.011 3.6E-07 56.0 14.1 154 119-297 145-353 (405)
30 3d8b_A Fidgetin-like protein 1 97.0 0.014 4.7E-07 54.6 14.4 165 120-306 82-296 (357)
31 1sxj_E Activator 1 40 kDa subu 96.9 0.0037 1.3E-07 58.0 9.8 53 253-306 186-238 (354)
32 3pxg_A Negative regulator of g 96.9 0.0024 8.2E-08 62.1 8.7 37 122-158 180-225 (468)
33 3pfi_A Holliday junction ATP-d 96.9 0.011 3.7E-07 54.6 12.8 48 253-302 177-224 (338)
34 1a5t_A Delta prime, HOLB; zinc 96.9 0.025 8.5E-07 52.2 15.1 87 213-306 108-206 (334)
35 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0049 1.7E-07 56.7 9.4 167 119-306 9-224 (322)
36 3u61_B DNA polymerase accessor 96.8 0.0049 1.7E-07 56.5 9.3 40 119-158 23-72 (324)
37 2zan_A Vacuolar protein sortin 96.8 0.021 7.1E-07 55.0 14.0 168 118-306 130-346 (444)
38 1qvr_A CLPB protein; coiled co 96.7 0.006 2.1E-07 63.8 10.3 38 121-158 169-215 (854)
39 3ec2_A DNA replication protein 96.7 0.0052 1.8E-07 51.2 8.1 66 142-224 46-111 (180)
40 3b9p_A CG5977-PA, isoform A; A 96.6 0.0083 2.8E-07 54.2 9.7 164 119-306 18-234 (297)
41 1sxj_C Activator 1 40 kDa subu 96.6 0.025 8.7E-07 52.2 12.8 167 121-305 24-213 (340)
42 3pxi_A Negative regulator of g 96.6 0.0048 1.6E-07 63.7 8.5 38 121-158 179-225 (758)
43 3eie_A Vacuolar protein sortin 96.6 0.0091 3.1E-07 54.9 9.5 166 117-306 13-229 (322)
44 4b4t_L 26S protease subunit RP 96.5 0.01 3.6E-07 56.8 10.0 84 121-224 180-285 (437)
45 3syl_A Protein CBBX; photosynt 96.5 0.0081 2.8E-07 54.6 8.7 38 123-160 32-93 (309)
46 3vfd_A Spastin; ATPase, microt 96.5 0.051 1.8E-06 51.2 14.3 166 119-306 112-327 (389)
47 4b4t_M 26S protease regulatory 96.4 0.01 3.4E-07 56.8 9.1 86 118-223 177-284 (434)
48 2z4s_A Chromosomal replication 96.4 0.067 2.3E-06 51.4 15.1 140 142-301 138-302 (440)
49 3bos_A Putative DNA replicatio 96.4 0.015 5.3E-07 50.2 9.5 50 253-304 167-216 (242)
50 1r6b_X CLPA protein; AAA+, N-t 96.4 0.015 5.2E-07 59.9 10.7 137 121-273 185-362 (758)
51 2w58_A DNAI, primosome compone 96.3 0.0033 1.1E-07 53.4 4.6 65 142-224 62-126 (202)
52 4b4t_H 26S protease regulatory 96.3 0.015 5E-07 55.9 9.4 154 119-297 206-414 (467)
53 3cf0_A Transitional endoplasmi 96.3 0.0086 2.9E-07 54.5 7.4 40 119-158 12-73 (301)
54 4b4t_K 26S protease regulatory 96.2 0.02 6.9E-07 54.6 10.1 84 120-223 170-275 (428)
55 2qp9_X Vacuolar protein sortin 96.2 0.013 4.3E-07 54.8 8.3 165 120-306 49-262 (355)
56 4b4t_I 26S protease regulatory 96.2 0.018 6.1E-07 54.8 9.3 86 119-224 179-286 (437)
57 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0045 1.5E-07 56.7 3.3 62 142-225 131-194 (331)
58 1d2n_A N-ethylmaleimide-sensit 95.8 0.031 1.1E-06 49.7 8.8 47 253-306 191-244 (272)
59 1lv7_A FTSH; alpha/beta domain 95.8 0.032 1.1E-06 49.2 8.7 39 120-158 10-69 (257)
60 1n0w_A DNA repair protein RAD5 95.7 0.08 2.8E-06 45.8 10.9 83 142-225 32-131 (243)
61 3hu3_A Transitional endoplasmi 95.7 0.029 1E-06 54.7 8.7 161 121-306 203-416 (489)
62 3io5_A Recombination and repai 95.6 0.056 1.9E-06 49.3 9.5 78 142-225 36-123 (333)
63 2x8a_A Nuclear valosin-contain 95.6 0.054 1.8E-06 48.5 9.3 39 121-159 9-69 (274)
64 3co5_A Putative two-component 95.5 0.0043 1.5E-07 49.8 1.7 35 123-157 5-50 (143)
65 1v5w_A DMC1, meiotic recombina 95.4 0.086 2.9E-06 48.8 10.4 82 142-224 130-230 (343)
66 2z43_A DNA repair and recombin 95.4 0.077 2.6E-06 48.6 10.1 82 142-224 115-214 (324)
67 2ce7_A Cell division protein F 95.4 0.062 2.1E-06 52.1 9.5 39 121-159 15-74 (476)
68 3cf2_A TER ATPase, transitiona 95.3 0.042 1.5E-06 56.6 8.5 153 120-297 202-406 (806)
69 2i1q_A DNA repair and recombin 95.3 0.074 2.5E-06 48.6 9.4 81 142-223 106-214 (322)
70 3hr8_A Protein RECA; alpha and 95.2 0.079 2.7E-06 49.3 9.5 77 142-225 69-151 (356)
71 1l8q_A Chromosomal replication 95.1 0.1 3.4E-06 47.7 9.8 113 142-274 45-180 (324)
72 1xp8_A RECA protein, recombina 95.1 0.079 2.7E-06 49.5 9.1 76 142-224 82-163 (366)
73 3n70_A Transport activator; si 95.0 0.014 4.6E-07 46.9 3.1 36 123-158 2-48 (145)
74 1ixz_A ATP-dependent metallopr 94.9 0.11 3.8E-06 45.5 9.2 40 120-159 14-74 (254)
75 2cvh_A DNA repair and recombin 94.9 0.069 2.4E-06 45.5 7.5 77 142-225 28-117 (220)
76 1u94_A RECA protein, recombina 94.9 0.1 3.4E-06 48.6 9.1 75 142-223 71-151 (356)
77 1iy2_A ATP-dependent metallopr 94.9 0.14 4.6E-06 45.7 9.7 42 118-159 36-98 (278)
78 2zr9_A Protein RECA, recombina 94.8 0.11 3.9E-06 48.1 9.2 76 142-224 69-150 (349)
79 3lda_A DNA repair protein RAD5 94.7 0.19 6.7E-06 47.4 10.8 81 142-223 186-283 (400)
80 4fcw_A Chaperone protein CLPB; 94.7 0.052 1.8E-06 49.1 6.7 96 123-225 18-131 (311)
81 2gno_A DNA polymerase III, gam 94.4 0.21 7.3E-06 45.3 10.0 125 129-273 4-152 (305)
82 2qgz_A Helicase loader, putati 94.4 0.039 1.3E-06 50.3 5.0 44 128-172 134-189 (308)
83 1ypw_A Transitional endoplasmi 94.3 0.081 2.8E-06 54.9 7.7 38 121-158 203-262 (806)
84 2c9o_A RUVB-like 1; hexameric 94.2 0.11 3.7E-06 50.1 8.0 39 121-159 36-88 (456)
85 3bh0_A DNAB-like replicative h 94.2 0.26 9E-06 44.9 10.2 42 142-187 76-117 (315)
86 3qfl_A MLA10; coiled-coil, (CC 94.2 0.17 5.8E-06 38.8 7.5 71 18-90 4-77 (115)
87 3t15_A Ribulose bisphosphate c 93.9 0.063 2.1E-06 48.5 5.3 18 142-159 44-61 (293)
88 2ck3_D ATP synthase subunit be 93.9 0.27 9.1E-06 47.3 9.8 83 142-225 161-265 (482)
89 1sky_E F1-ATPase, F1-ATP synth 93.7 0.22 7.4E-06 47.9 8.8 82 142-224 159-256 (473)
90 1fx0_B ATP synthase beta chain 93.6 0.27 9.2E-06 47.5 9.2 82 142-224 173-277 (498)
91 2r62_A Cell division protease 93.5 0.06 2.1E-06 47.6 4.3 39 121-159 10-69 (268)
92 2kjq_A DNAA-related protein; s 93.1 0.068 2.3E-06 43.1 3.7 31 142-174 44-74 (149)
93 2r44_A Uncharacterized protein 93.0 0.065 2.2E-06 49.1 3.9 37 122-158 27-70 (331)
94 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.39 1.3E-05 40.9 8.8 39 142-184 31-69 (235)
95 2dhr_A FTSH; AAA+ protein, hex 92.8 0.16 5.6E-06 49.4 6.5 41 119-159 28-89 (499)
96 1ofh_A ATP-dependent HSL prote 92.7 0.093 3.2E-06 47.2 4.5 37 122-158 15-74 (310)
97 2r6a_A DNAB helicase, replicat 92.7 4.3 0.00015 38.7 16.5 42 142-186 211-252 (454)
98 3ice_A Transcription terminati 92.6 0.16 5.4E-06 47.7 5.8 80 142-225 182-273 (422)
99 4a74_A DNA repair and recombin 92.3 1 3.4E-05 38.2 10.4 81 142-223 33-135 (231)
100 3vr4_D V-type sodium ATPase su 92.3 0.35 1.2E-05 46.2 7.8 81 142-224 159-259 (465)
101 2bjv_A PSP operon transcriptio 92.3 0.075 2.6E-06 47.0 3.1 37 122-158 6-53 (265)
102 3cf2_A TER ATPase, transitiona 92.1 0.3 1E-05 50.3 7.8 84 121-224 476-581 (806)
103 1in4_A RUVB, holliday junction 91.8 0.16 5.4E-06 46.7 4.8 47 254-302 174-220 (334)
104 1pzn_A RAD51, DNA repair and r 91.7 0.67 2.3E-05 42.9 9.1 83 142-225 139-243 (349)
105 3nbx_X ATPase RAVA; AAA+ ATPas 91.4 0.11 3.8E-06 50.7 3.4 37 122-158 22-65 (500)
106 2c61_A A-type ATP synthase non 91.4 0.29 9.9E-06 47.0 6.2 83 142-224 160-260 (469)
107 1qvr_A CLPB protein; coiled co 91.1 4.7 0.00016 41.9 15.7 37 122-158 558-612 (854)
108 2q6t_A DNAB replication FORK h 91.0 1 3.6E-05 43.0 9.9 43 142-187 208-250 (444)
109 1g8p_A Magnesium-chelatase 38 90.6 0.15 5E-06 46.9 3.4 39 120-158 22-69 (350)
110 3l0o_A Transcription terminati 90.4 0.13 4.5E-06 48.2 2.8 92 133-225 164-274 (427)
111 2dr3_A UPF0273 protein PH0284; 90.4 0.9 3.1E-05 39.0 8.2 31 142-174 31-61 (247)
112 2ck3_A ATP synthase subunit al 90.4 1.1 3.6E-05 43.5 9.2 84 142-225 170-274 (510)
113 2px0_A Flagellar biosynthesis 90.3 0.82 2.8E-05 41.2 8.0 76 142-221 113-190 (296)
114 1ojl_A Transcriptional regulat 90.3 0.17 5.7E-06 45.9 3.3 36 123-158 3-49 (304)
115 3hws_A ATP-dependent CLP prote 90.1 0.23 8E-06 46.0 4.3 36 123-158 16-75 (363)
116 3cmu_A Protein RECA, recombina 90.1 0.48 1.6E-05 53.5 7.3 75 142-223 1435-1515(2050)
117 3pxi_A Negative regulator of g 90.0 0.19 6.6E-06 51.7 4.0 51 122-174 491-559 (758)
118 1rz3_A Hypothetical protein rb 89.9 0.28 9.6E-06 41.3 4.3 33 127-159 3-47 (201)
119 3gqb_B V-type ATP synthase bet 89.5 0.71 2.4E-05 44.1 7.1 83 142-224 155-262 (464)
120 4a1f_A DNAB helicase, replicat 89.5 1.6 5.5E-05 40.1 9.3 43 142-188 54-96 (338)
121 2zts_A Putative uncharacterize 89.4 0.85 2.9E-05 39.3 7.2 41 142-185 38-78 (251)
122 2qe7_A ATP synthase subunit al 89.0 1 3.5E-05 43.5 7.8 80 142-225 170-266 (502)
123 1r6b_X CLPA protein; AAA+, N-t 88.9 0.47 1.6E-05 48.7 5.8 37 122-158 458-512 (758)
124 3cmw_A Protein RECA, recombina 88.8 0.93 3.2E-05 50.5 8.2 76 142-224 740-821 (1706)
125 3hjn_A DTMP kinase, thymidylat 88.8 1.5 5.1E-05 36.8 8.0 77 142-222 8-90 (197)
126 3vr4_A V-type sodium ATPase ca 88.5 1.1 3.8E-05 44.0 7.7 78 142-223 240-339 (600)
127 1qhx_A CPT, protein (chloramph 88.3 0.22 7.5E-06 40.8 2.4 17 142-158 11-27 (178)
128 3bgw_A DNAB-like replicative h 88.3 1.5 5.2E-05 41.9 8.7 31 142-174 205-235 (444)
129 3mfy_A V-type ATP synthase alp 88.2 1.4 4.8E-05 43.1 8.2 80 142-225 235-336 (588)
130 2r9v_A ATP synthase subunit al 88.1 1.1 3.7E-05 43.4 7.4 80 142-225 183-279 (515)
131 3cwq_A Para family chromosome 87.8 0.58 2E-05 39.7 4.9 36 142-180 9-44 (209)
132 2ehv_A Hypothetical protein PH 87.8 1.5 5.1E-05 37.7 7.7 15 142-156 38-52 (251)
133 3oaa_A ATP synthase subunit al 87.7 2.1 7.2E-05 41.3 9.0 80 142-225 170-266 (513)
134 3k1j_A LON protease, ATP-depen 87.6 0.41 1.4E-05 47.8 4.3 40 119-158 38-84 (604)
135 2ffh_A Protein (FFH); SRP54, s 87.4 2 6.7E-05 40.8 8.7 78 142-222 106-189 (425)
136 2b8t_A Thymidine kinase; deoxy 87.4 0.16 5.6E-06 43.8 1.1 77 142-223 20-99 (223)
137 2xxa_A Signal recognition part 87.3 2.7 9.2E-05 40.0 9.7 20 142-161 108-127 (433)
138 3cmu_A Protein RECA, recombina 87.2 1.3 4.6E-05 50.0 8.4 75 142-223 391-471 (2050)
139 1j8m_F SRP54, signal recogniti 87.1 1.6 5.4E-05 39.3 7.6 79 142-222 106-189 (297)
140 3kb2_A SPBC2 prophage-derived 87.1 0.28 9.5E-06 39.7 2.3 17 142-158 9-25 (173)
141 1um8_A ATP-dependent CLP prote 87.0 0.5 1.7E-05 44.0 4.3 17 142-158 80-96 (376)
142 3lw7_A Adenylate kinase relate 86.7 0.26 8.8E-06 39.9 1.9 13 142-154 9-21 (179)
143 1q57_A DNA primase/helicase; d 86.6 3 0.0001 40.4 9.8 43 142-187 250-292 (503)
144 1ly1_A Polynucleotide kinase; 86.3 0.31 1.1E-05 39.7 2.3 15 142-156 10-24 (181)
145 3kjh_A CO dehydrogenase/acetyl 85.7 0.72 2.5E-05 39.7 4.4 36 142-179 8-43 (254)
146 2r8r_A Sensor protein; KDPD, P 85.7 0.43 1.5E-05 41.2 2.8 31 142-174 14-44 (228)
147 1gvn_B Zeta; postsegregational 85.6 0.66 2.3E-05 41.6 4.2 16 142-157 41-56 (287)
148 3trf_A Shikimate kinase, SK; a 85.2 0.4 1.4E-05 39.5 2.4 17 142-158 13-29 (185)
149 3vaa_A Shikimate kinase, SK; s 85.1 0.41 1.4E-05 40.1 2.4 17 142-158 33-49 (199)
150 1kag_A SKI, shikimate kinase I 85.1 0.39 1.3E-05 39.0 2.3 17 142-158 12-28 (173)
151 1nks_A Adenylate kinase; therm 85.1 0.42 1.4E-05 39.4 2.5 18 142-159 9-26 (194)
152 3c8u_A Fructokinase; YP_612366 84.9 0.59 2E-05 39.5 3.3 18 142-159 30-47 (208)
153 1kht_A Adenylate kinase; phosp 84.9 0.44 1.5E-05 39.2 2.5 18 142-159 11-28 (192)
154 1zp6_A Hypothetical protein AT 84.7 0.37 1.3E-05 39.8 1.9 16 142-157 17-32 (191)
155 4dzz_A Plasmid partitioning pr 84.4 0.52 1.8E-05 39.4 2.7 35 142-178 10-44 (206)
156 1vma_A Cell division protein F 84.3 4.2 0.00014 36.7 8.9 77 142-222 112-195 (306)
157 1via_A Shikimate kinase; struc 84.3 0.48 1.6E-05 38.7 2.4 17 142-158 12-28 (175)
158 3cmw_A Protein RECA, recombina 84.3 1.8 6E-05 48.3 7.4 76 142-224 1439-1520(1706)
159 3dm5_A SRP54, signal recogniti 84.1 3.1 0.00011 39.6 8.3 18 142-159 108-125 (443)
160 3kl4_A SRP54, signal recogniti 84.1 3.5 0.00012 39.2 8.6 19 142-160 105-123 (433)
161 3iij_A Coilin-interacting nucl 83.9 0.5 1.7E-05 38.7 2.4 17 142-158 19-35 (180)
162 2rhm_A Putative kinase; P-loop 83.8 0.5 1.7E-05 39.0 2.4 17 142-158 13-29 (193)
163 3t61_A Gluconokinase; PSI-biol 83.8 0.5 1.7E-05 39.6 2.4 17 142-158 26-42 (202)
164 2jaq_A Deoxyguanosine kinase; 83.8 0.51 1.7E-05 39.3 2.4 18 142-159 8-25 (205)
165 1ls1_A Signal recognition part 83.5 6.2 0.00021 35.2 9.7 77 142-222 106-189 (295)
166 2ga8_A Hypothetical 39.9 kDa p 83.4 0.95 3.2E-05 41.9 4.2 18 142-159 32-49 (359)
167 1yrb_A ATP(GTP)binding protein 82.9 0.61 2.1E-05 40.7 2.7 18 142-159 22-39 (262)
168 3uie_A Adenylyl-sulfate kinase 82.7 0.55 1.9E-05 39.3 2.2 18 142-159 33-50 (200)
169 2ze6_A Isopentenyl transferase 82.7 0.59 2E-05 41.0 2.5 17 142-158 9-25 (253)
170 1kgd_A CASK, peripheral plasma 82.7 0.57 2E-05 38.6 2.3 17 142-158 13-29 (180)
171 2p5t_B PEZT; postsegregational 82.1 0.9 3.1E-05 39.7 3.5 17 142-158 40-56 (253)
172 3cm0_A Adenylate kinase; ATP-b 82.1 0.67 2.3E-05 38.1 2.5 17 142-158 12-28 (186)
173 3gqb_A V-type ATP synthase alp 82.1 1.2 4E-05 43.6 4.4 79 142-224 229-329 (578)
174 1knq_A Gluconate kinase; ALFA/ 82.1 0.61 2.1E-05 37.9 2.2 17 142-158 16-32 (175)
175 1g41_A Heat shock protein HSLU 81.9 0.95 3.3E-05 43.2 3.7 38 122-159 15-75 (444)
176 2qor_A Guanylate kinase; phosp 81.8 0.67 2.3E-05 39.0 2.4 17 142-158 20-36 (204)
177 2yvu_A Probable adenylyl-sulfa 81.8 0.68 2.3E-05 38.2 2.4 19 142-160 21-39 (186)
178 1cp2_A CP2, nitrogenase iron p 81.7 0.73 2.5E-05 40.4 2.7 30 142-173 9-38 (269)
179 1tev_A UMP-CMP kinase; ploop, 81.7 0.69 2.4E-05 38.1 2.4 17 142-158 11-27 (196)
180 3k9g_A PF-32 protein; ssgcid, 81.6 2.9 9.8E-05 36.5 6.6 35 142-179 36-70 (267)
181 1e6c_A Shikimate kinase; phosp 81.6 0.7 2.4E-05 37.4 2.4 17 142-158 10-26 (173)
182 1zuh_A Shikimate kinase; alpha 81.5 0.72 2.4E-05 37.3 2.4 17 142-158 15-31 (168)
183 2plr_A DTMP kinase, probable t 81.5 0.7 2.4E-05 38.7 2.4 18 142-159 12-29 (213)
184 4eun_A Thermoresistant glucoki 81.4 0.67 2.3E-05 38.8 2.3 17 142-158 37-53 (200)
185 2bdt_A BH3686; alpha-beta prot 81.4 0.67 2.3E-05 38.3 2.2 15 142-156 10-24 (189)
186 2iyv_A Shikimate kinase, SK; t 81.2 0.72 2.5E-05 37.8 2.4 17 142-158 10-26 (184)
187 1ye8_A Protein THEP1, hypothet 80.9 0.73 2.5E-05 38.1 2.3 18 142-159 8-25 (178)
188 1fx0_A ATP synthase alpha chai 80.8 3.5 0.00012 39.9 7.2 79 142-224 171-266 (507)
189 2pt5_A Shikimate kinase, SK; a 80.8 0.74 2.5E-05 37.1 2.3 17 142-158 8-24 (168)
190 3end_A Light-independent proto 80.6 1.6 5.6E-05 39.1 4.8 32 142-175 49-80 (307)
191 2c95_A Adenylate kinase 1; tra 80.2 0.85 2.9E-05 37.7 2.5 17 142-158 17-33 (196)
192 3tr0_A Guanylate kinase, GMP k 80.1 0.79 2.7E-05 38.2 2.3 16 142-157 15-30 (205)
193 3a4m_A L-seryl-tRNA(SEC) kinas 80.0 0.77 2.6E-05 40.4 2.3 17 142-158 12-28 (260)
194 2bwj_A Adenylate kinase 5; pho 80.0 0.84 2.9E-05 37.8 2.4 17 142-158 20-36 (199)
195 3ea0_A ATPase, para family; al 79.9 0.94 3.2E-05 39.0 2.8 31 142-173 13-43 (245)
196 1y63_A LMAJ004144AAA protein; 79.8 0.85 2.9E-05 37.6 2.4 16 142-157 18-33 (184)
197 2cdn_A Adenylate kinase; phosp 79.8 0.86 2.9E-05 38.1 2.4 17 142-158 28-44 (201)
198 3q9l_A Septum site-determining 79.8 0.94 3.2E-05 39.4 2.7 37 142-180 11-48 (260)
199 2j41_A Guanylate kinase; GMP, 79.7 0.81 2.8E-05 38.2 2.2 17 142-158 14-30 (207)
200 2vli_A Antibiotic resistance p 79.6 0.58 2E-05 38.3 1.2 17 142-158 13-29 (183)
201 3fb4_A Adenylate kinase; psych 79.6 0.88 3E-05 38.4 2.4 17 142-158 8-24 (216)
202 2xj4_A MIPZ; replication, cell 79.6 1.9 6.4E-05 38.3 4.7 39 142-182 13-52 (286)
203 2ph1_A Nucleotide-binding prot 79.6 0.95 3.2E-05 39.7 2.7 31 142-174 27-57 (262)
204 2afh_E Nitrogenase iron protei 79.6 0.95 3.2E-05 40.3 2.7 31 142-174 10-40 (289)
205 2pbr_A DTMP kinase, thymidylat 79.3 0.9 3.1E-05 37.4 2.4 17 142-158 8-24 (195)
206 3llm_A ATP-dependent RNA helic 79.2 5.7 0.0002 33.9 7.6 81 142-224 84-187 (235)
207 1aky_A Adenylate kinase; ATP:A 79.2 0.92 3.1E-05 38.5 2.4 17 142-158 12-28 (220)
208 1zd8_A GTP:AMP phosphotransfer 79.1 0.92 3.2E-05 38.8 2.4 17 142-158 15-31 (227)
209 2hf9_A Probable hydrogenase ni 79.1 1.7 5.9E-05 36.7 4.2 17 142-158 46-62 (226)
210 2if2_A Dephospho-COA kinase; a 79.0 0.89 3E-05 38.0 2.3 15 142-156 9-23 (204)
211 1qf9_A UMP/CMP kinase, protein 78.9 0.95 3.2E-05 37.2 2.4 17 142-158 14-30 (194)
212 1cke_A CK, MSSA, protein (cyti 78.7 0.92 3.1E-05 38.6 2.3 17 142-158 13-29 (227)
213 2z0h_A DTMP kinase, thymidylat 78.6 0.97 3.3E-05 37.3 2.4 18 142-159 8-25 (197)
214 1g3q_A MIND ATPase, cell divis 78.6 1.1 3.7E-05 38.4 2.7 31 142-174 11-41 (237)
215 1zak_A Adenylate kinase; ATP:A 78.6 0.99 3.4E-05 38.4 2.4 17 142-158 13-29 (222)
216 3dl0_A Adenylate kinase; phosp 78.5 0.97 3.3E-05 38.2 2.4 17 142-158 8-24 (216)
217 1ex7_A Guanylate kinase; subst 78.5 1 3.5E-05 37.6 2.4 16 142-157 9-24 (186)
218 1ukz_A Uridylate kinase; trans 78.4 0.99 3.4E-05 37.7 2.4 16 142-157 23-38 (203)
219 1xjc_A MOBB protein homolog; s 78.3 1.3 4.3E-05 36.4 2.9 18 142-159 12-29 (169)
220 2oze_A ORF delta'; para, walke 78.3 1.1 3.7E-05 40.1 2.7 32 142-175 45-76 (298)
221 3zq6_A Putative arsenical pump 78.3 2.3 7.7E-05 38.7 4.9 18 142-159 22-39 (324)
222 3ug7_A Arsenical pump-driving 78.1 2 6.9E-05 39.6 4.5 18 142-159 34-51 (349)
223 3asz_A Uridine kinase; cytidin 78.1 0.96 3.3E-05 38.0 2.2 17 142-158 14-30 (211)
224 2wwf_A Thymidilate kinase, put 78.1 1 3.5E-05 37.8 2.4 24 142-166 18-41 (212)
225 3gmt_A Adenylate kinase; ssgci 78.1 6.2 0.00021 34.0 7.3 18 142-159 16-33 (230)
226 3tau_A Guanylate kinase, GMP k 77.9 1 3.4E-05 38.1 2.3 17 142-158 16-32 (208)
227 4gp7_A Metallophosphoesterase; 77.9 0.75 2.6E-05 37.5 1.4 14 142-155 17-30 (171)
228 1byi_A Dethiobiotin synthase; 77.9 1.2 4E-05 37.8 2.7 18 142-159 10-27 (224)
229 1htw_A HI0065; nucleotide-bind 77.8 0.95 3.3E-05 36.6 2.0 17 142-158 41-57 (158)
230 3a00_A Guanylate kinase, GMP k 77.6 1 3.5E-05 37.2 2.2 18 142-159 9-26 (186)
231 1nn5_A Similar to deoxythymidy 77.4 1.1 3.8E-05 37.6 2.4 24 142-166 17-40 (215)
232 3iqw_A Tail-anchored protein t 77.2 2.4 8.3E-05 38.8 4.7 18 142-159 24-41 (334)
233 3upu_A ATP-dependent DNA helic 77.1 2.7 9.1E-05 40.3 5.3 20 142-161 53-72 (459)
234 2bbw_A Adenylate kinase 4, AK4 77.1 1 3.5E-05 39.1 2.1 17 142-158 35-51 (246)
235 1tue_A Replication protein E1; 77.0 1.7 5.9E-05 36.9 3.4 17 142-158 66-82 (212)
236 1e4v_A Adenylate kinase; trans 77.0 1.2 4E-05 37.7 2.4 17 142-158 8-24 (214)
237 3be4_A Adenylate kinase; malar 76.8 1.2 4.2E-05 37.7 2.5 17 142-158 13-29 (217)
238 1lvg_A Guanylate kinase, GMP k 76.5 1.2 4E-05 37.3 2.3 17 142-158 12-28 (198)
239 2j37_W Signal recognition part 76.4 12 0.00041 36.3 9.6 18 142-159 109-126 (504)
240 3m6a_A ATP-dependent protease 76.4 1.6 5.3E-05 43.0 3.4 37 122-158 81-132 (543)
241 2qt1_A Nicotinamide riboside k 76.3 1 3.6E-05 37.7 1.9 16 142-157 29-44 (207)
242 2v54_A DTMP kinase, thymidylat 76.2 1.2 4.1E-05 37.0 2.3 17 142-158 12-28 (204)
243 2pez_A Bifunctional 3'-phospho 76.1 1.2 4.2E-05 36.3 2.3 18 142-159 13-30 (179)
244 1wcv_1 SOJ, segregation protei 76.0 1.2 4E-05 38.9 2.2 31 142-174 15-45 (257)
245 2xb4_A Adenylate kinase; ATP-b 75.9 1.3 4.4E-05 37.8 2.4 17 142-158 8-24 (223)
246 1hyq_A MIND, cell division inh 75.9 1.4 4.8E-05 38.4 2.7 31 142-174 11-41 (263)
247 1ak2_A Adenylate kinase isoenz 75.7 1.3 4.5E-05 38.0 2.4 17 142-158 24-40 (233)
248 1g5t_A COB(I)alamin adenosyltr 75.7 4.1 0.00014 34.1 5.4 79 142-222 36-129 (196)
249 3tqc_A Pantothenate kinase; bi 75.5 2 6.9E-05 39.1 3.7 17 142-158 100-116 (321)
250 1m7g_A Adenylylsulfate kinase; 75.4 1.3 4.3E-05 37.4 2.2 18 142-159 33-50 (211)
251 3fkq_A NTRC-like two-domain pr 75.4 2.4 8.2E-05 39.3 4.3 34 142-177 152-185 (373)
252 3e70_C DPA, signal recognition 75.4 19 0.00064 32.7 10.2 47 142-191 137-185 (328)
253 1jjv_A Dephospho-COA kinase; P 75.3 1.1 3.9E-05 37.4 1.9 15 142-156 10-24 (206)
254 1gtv_A TMK, thymidylate kinase 75.2 0.98 3.4E-05 37.9 1.4 18 142-159 8-25 (214)
255 2wsm_A Hydrogenase expression/ 75.1 2.1 7.2E-05 36.0 3.6 17 142-158 38-54 (221)
256 1odf_A YGR205W, hypothetical 3 74.9 2.6 8.8E-05 37.8 4.2 45 142-186 39-84 (290)
257 1znw_A Guanylate kinase, GMP k 74.8 1.3 4.6E-05 37.2 2.2 17 142-158 28-44 (207)
258 3tlx_A Adenylate kinase 2; str 74.8 1.5 5E-05 38.1 2.5 17 142-158 37-53 (243)
259 1uf9_A TT1252 protein; P-loop, 74.8 1.4 4.7E-05 36.6 2.3 16 142-157 16-31 (203)
260 1ypw_A Transitional endoplasmi 74.4 1.4 4.9E-05 45.5 2.7 39 121-159 476-536 (806)
261 1z6g_A Guanylate kinase; struc 73.9 1.5 5E-05 37.4 2.2 17 142-158 31-47 (218)
262 3fwy_A Light-independent proto 73.8 1.3 4.4E-05 40.2 2.0 30 142-173 56-85 (314)
263 4tmk_A Protein (thymidylate ki 73.5 5.4 0.00018 33.8 5.7 45 142-187 11-55 (213)
264 4hlc_A DTMP kinase, thymidylat 73.4 2.6 8.7E-05 35.6 3.6 23 142-166 10-32 (205)
265 3pg5_A Uncharacterized protein 73.4 3.1 0.0001 38.5 4.5 37 142-180 10-46 (361)
266 2jeo_A Uridine-cytidine kinase 73.4 1.5 5.1E-05 38.0 2.2 16 142-157 33-48 (245)
267 3lv8_A DTMP kinase, thymidylat 73.1 5 0.00017 34.7 5.5 28 142-170 35-62 (236)
268 1ltq_A Polynucleotide kinase; 73.0 1.6 5.3E-05 39.0 2.3 15 142-156 10-24 (301)
269 1cr0_A DNA primase/helicase; R 72.9 2.8 9.7E-05 37.2 4.0 45 142-189 43-87 (296)
270 4eaq_A DTMP kinase, thymidylat 72.9 2.8 9.6E-05 36.0 3.8 19 142-160 34-52 (229)
271 3ney_A 55 kDa erythrocyte memb 72.8 1.8 6E-05 36.5 2.4 17 142-158 27-43 (197)
272 3aez_A Pantothenate kinase; tr 72.7 1.6 5.4E-05 39.6 2.3 18 142-159 98-115 (312)
273 1s96_A Guanylate kinase, GMP k 72.4 1.7 5.8E-05 37.2 2.3 17 142-158 24-40 (219)
274 2ce2_X GTPase HRAS; signaling 72.4 1.7 5.7E-05 34.2 2.1 17 142-158 11-27 (166)
275 3nwj_A ATSK2; P loop, shikimat 72.3 1.7 5.7E-05 38.1 2.2 17 142-158 56-72 (250)
276 4e22_A Cytidylate kinase; P-lo 72.2 1.8 6.1E-05 37.8 2.4 16 142-157 35-50 (252)
277 1uj2_A Uridine-cytidine kinase 72.0 1.7 5.8E-05 37.8 2.2 17 142-158 30-46 (252)
278 3sr0_A Adenylate kinase; phosp 72.0 1.9 6.4E-05 36.5 2.4 18 142-159 8-25 (206)
279 1np6_A Molybdopterin-guanine d 71.6 2.4 8.1E-05 34.8 2.9 18 142-159 14-31 (174)
280 3ez2_A Plasmid partition prote 71.4 1.6 5.5E-05 40.9 2.1 18 142-159 117-134 (398)
281 3ld9_A DTMP kinase, thymidylat 71.3 4 0.00014 35.0 4.4 46 142-187 29-74 (223)
282 3r20_A Cytidylate kinase; stru 71.2 2 7E-05 37.1 2.5 17 142-158 17-33 (233)
283 1nlf_A Regulatory protein REPA 71.1 1.7 5.8E-05 38.4 2.1 34 142-175 38-79 (279)
284 3io3_A DEHA2D07832P; chaperone 71.1 4.1 0.00014 37.5 4.7 18 142-159 26-43 (348)
285 3ake_A Cytidylate kinase; CMP 71.1 1.9 6.4E-05 35.9 2.2 17 142-158 10-26 (208)
286 2i3b_A HCR-ntpase, human cance 71.0 1.9 6.6E-05 35.9 2.3 18 142-159 9-26 (189)
287 1vht_A Dephospho-COA kinase; s 70.9 1.9 6.6E-05 36.4 2.3 15 142-156 12-26 (218)
288 2yv5_A YJEQ protein; hydrolase 70.7 2.8 9.6E-05 37.7 3.4 27 131-158 156-188 (302)
289 2grj_A Dephospho-COA kinase; T 70.4 2.1 7.2E-05 35.7 2.4 16 142-157 20-35 (192)
290 2dyk_A GTP-binding protein; GT 70.2 2.1 7.2E-05 33.6 2.3 16 142-157 9-24 (161)
291 1oix_A RAS-related protein RAB 70.0 2.1 7.1E-05 35.3 2.3 17 142-158 37-53 (191)
292 1rj9_A FTSY, signal recognitio 69.9 2 6.7E-05 38.8 2.2 18 142-159 110-127 (304)
293 2woo_A ATPase GET3; tail-ancho 69.9 4.4 0.00015 36.8 4.6 18 142-159 27-44 (329)
294 2woj_A ATPase GET3; tail-ancho 69.9 5.4 0.00018 36.7 5.2 18 142-159 26-43 (354)
295 3b85_A Phosphate starvation-in 69.7 3 0.0001 35.2 3.2 16 142-157 30-45 (208)
296 2orw_A Thymidine kinase; TMTK, 69.5 2.7 9.3E-05 34.7 2.8 18 142-159 11-28 (184)
297 2fz4_A DNA repair protein RAD2 69.4 9.6 0.00033 32.6 6.5 32 127-158 95-132 (237)
298 3igf_A ALL4481 protein; two-do 68.9 2.8 9.5E-05 39.1 3.0 29 142-172 10-38 (374)
299 3con_A GTPase NRAS; structural 68.7 2.2 7.5E-05 34.8 2.1 17 142-158 29-45 (190)
300 3umf_A Adenylate kinase; rossm 68.7 2.5 8.5E-05 36.1 2.5 18 142-159 37-54 (217)
301 2f9l_A RAB11B, member RAS onco 68.6 2.3 7.8E-05 35.2 2.2 16 142-157 13-28 (199)
302 2ocp_A DGK, deoxyguanosine kin 68.2 2.5 8.4E-05 36.4 2.4 17 142-158 10-26 (241)
303 4edh_A DTMP kinase, thymidylat 68.1 8.2 0.00028 32.6 5.7 25 142-167 14-38 (213)
304 1z2a_A RAS-related protein RAB 67.9 2.5 8.4E-05 33.4 2.2 16 142-157 13-28 (168)
305 2f1r_A Molybdopterin-guanine d 67.8 2.3 8E-05 34.7 2.0 20 142-161 10-29 (171)
306 1ihu_A Arsenical pump-driving 66.8 5.3 0.00018 39.5 4.8 30 142-173 16-45 (589)
307 3crm_A TRNA delta(2)-isopenten 66.8 2.7 9.2E-05 38.3 2.4 17 142-158 13-29 (323)
308 1sq5_A Pantothenate kinase; P- 66.6 2.6 8.8E-05 38.0 2.3 17 142-158 88-104 (308)
309 2f6r_A COA synthase, bifunctio 65.8 2.4 8.4E-05 37.6 1.9 15 142-156 83-97 (281)
310 2wji_A Ferrous iron transport 65.8 2.4 8.1E-05 33.9 1.7 16 142-157 11-26 (165)
311 2wjg_A FEOB, ferrous iron tran 65.7 2.5 8.6E-05 34.3 1.9 16 142-157 15-30 (188)
312 2yhs_A FTSY, cell division pro 65.7 6.3 0.00022 38.1 4.9 34 142-178 301-334 (503)
313 3b9q_A Chloroplast SRP recepto 65.7 2.8 9.4E-05 37.8 2.3 34 142-178 108-141 (302)
314 2zej_A Dardarin, leucine-rich 65.7 2.6 8.8E-05 34.3 1.9 15 142-156 10-24 (184)
315 1tf7_A KAIC; homohexamer, hexa 65.7 9.8 0.00033 37.0 6.4 18 142-159 289-306 (525)
316 2d2e_A SUFC protein; ABC-ATPas 65.7 2.4 8.3E-05 37.0 1.8 16 142-157 37-52 (250)
317 2onk_A Molybdate/tungstate ABC 65.6 2.7 9.2E-05 36.5 2.1 16 142-157 32-47 (240)
318 3d3q_A TRNA delta(2)-isopenten 65.5 2.9 9.9E-05 38.4 2.4 17 142-158 15-31 (340)
319 1u0l_A Probable GTPase ENGC; p 65.5 3.9 0.00013 36.7 3.2 27 131-157 160-192 (301)
320 1u8z_A RAS-related protein RAL 65.4 3 0.0001 32.8 2.2 17 142-158 12-28 (168)
321 1tf7_A KAIC; homohexamer, hexa 65.1 9.9 0.00034 36.9 6.3 13 142-154 47-59 (525)
322 4akg_A Glutathione S-transfera 64.9 17 0.00058 42.7 8.9 36 142-182 1617-1652(2695)
323 3tif_A Uncharacterized ABC tra 64.9 2.6 9E-05 36.4 1.9 15 142-156 39-53 (235)
324 2zu0_C Probable ATP-dependent 64.9 2.5 8.7E-05 37.2 1.8 16 142-157 54-69 (267)
325 2ged_A SR-beta, signal recogni 64.8 3.1 0.00011 33.9 2.3 16 142-157 56-71 (193)
326 2pcj_A ABC transporter, lipopr 64.7 2.7 9.3E-05 35.9 1.9 15 142-156 38-52 (224)
327 1sgw_A Putative ABC transporte 64.3 2.3 7.7E-05 36.3 1.3 16 142-157 43-58 (214)
328 2cbz_A Multidrug resistance-as 64.1 2.6 8.8E-05 36.5 1.7 16 142-157 39-54 (237)
329 1ji0_A ABC transporter; ATP bi 64.0 2.3 7.7E-05 36.9 1.3 16 142-157 40-55 (240)
330 1r8s_A ADP-ribosylation factor 64.0 3.3 0.00011 32.5 2.3 17 142-158 8-24 (164)
331 3lnc_A Guanylate kinase, GMP k 63.9 1.9 6.6E-05 36.8 0.8 16 142-157 35-51 (231)
332 3v9p_A DTMP kinase, thymidylat 63.8 7 0.00024 33.5 4.4 19 142-160 33-51 (227)
333 1c1y_A RAS-related protein RAP 63.8 3.3 0.00011 32.6 2.2 16 142-157 11-26 (167)
334 3zvl_A Bifunctional polynucleo 63.7 2.6 8.8E-05 39.8 1.7 17 142-158 266-282 (416)
335 1z08_A RAS-related protein RAB 63.6 3.4 0.00012 32.7 2.3 17 142-158 14-30 (170)
336 2vp4_A Deoxynucleoside kinase; 63.5 1.7 5.8E-05 37.3 0.4 16 142-157 28-43 (230)
337 1ek0_A Protein (GTP-binding pr 63.3 3.4 0.00012 32.5 2.2 17 142-158 11-27 (170)
338 1nrj_B SR-beta, signal recogni 63.2 3.3 0.00011 34.6 2.2 17 142-158 20-36 (218)
339 4bas_A ADP-ribosylation factor 63.2 3.1 0.00011 34.0 2.0 16 142-157 25-40 (199)
340 1g6h_A High-affinity branched- 63.2 2.7 9.2E-05 36.8 1.7 16 142-157 41-56 (257)
341 1m7b_A RND3/RHOE small GTP-bin 63.1 3.4 0.00012 33.5 2.2 17 142-158 15-31 (184)
342 1zu4_A FTSY; GTPase, signal re 63.1 3.9 0.00013 37.2 2.7 18 142-159 113-130 (320)
343 2erx_A GTP-binding protein DI- 62.9 3.2 0.00011 32.8 1.9 16 142-157 11-26 (172)
344 3kta_A Chromosome segregation 62.7 3 0.0001 33.9 1.8 15 142-156 34-48 (182)
345 3ez9_A Para; DNA binding, wing 62.7 1.8 6.1E-05 40.6 0.4 18 142-159 120-137 (403)
346 1z0j_A RAB-22, RAS-related pro 62.7 3.6 0.00012 32.4 2.3 17 142-158 14-30 (170)
347 1p6x_A Thymidine kinase; P-loo 62.6 2.9 9.9E-05 38.3 1.8 18 142-159 15-32 (334)
348 1kao_A RAP2A; GTP-binding prot 62.6 3.7 0.00013 32.2 2.3 17 142-158 11-27 (167)
349 2olj_A Amino acid ABC transpor 62.5 2.8 9.7E-05 36.9 1.7 16 142-157 58-73 (263)
350 3t1o_A Gliding protein MGLA; G 62.4 3.6 0.00012 33.5 2.2 16 142-157 22-37 (198)
351 2nzj_A GTP-binding protein REM 62.3 3.1 0.0001 33.1 1.7 16 142-157 12-27 (175)
352 1ky3_A GTP-binding protein YPT 62.2 3.7 0.00013 32.8 2.3 17 142-158 16-32 (182)
353 1b0u_A Histidine permease; ABC 61.8 3.2 0.00011 36.4 1.9 16 142-157 40-55 (262)
354 2fn4_A P23, RAS-related protei 61.8 3.8 0.00013 32.7 2.3 17 142-158 17-33 (181)
355 3sop_A Neuronal-specific septi 61.8 3.5 0.00012 36.4 2.2 17 142-158 10-26 (270)
356 4b3f_X DNA-binding protein smu 61.8 12 0.00042 37.3 6.4 53 130-186 194-254 (646)
357 2eyu_A Twitching motility prot 61.8 3.6 0.00012 36.1 2.2 18 142-159 33-50 (261)
358 2ff7_A Alpha-hemolysin translo 61.7 3 0.0001 36.3 1.7 16 142-157 43-58 (247)
359 3p32_A Probable GTPase RV1496/ 61.7 8 0.00027 35.5 4.7 17 142-158 87-103 (355)
360 2hxs_A RAB-26, RAS-related pro 61.6 3.9 0.00013 32.6 2.3 16 142-157 14-29 (178)
361 2yz2_A Putative ABC transporte 61.6 2.7 9.1E-05 37.1 1.3 16 142-157 41-56 (266)
362 1svm_A Large T antigen; AAA+ f 61.5 3.5 0.00012 38.4 2.2 16 142-157 177-192 (377)
363 1z0f_A RAB14, member RAS oncog 61.5 3.8 0.00013 32.6 2.2 17 142-158 23-39 (179)
364 3ihw_A Centg3; RAS, centaurin, 61.2 3.9 0.00013 33.3 2.3 16 142-157 28-43 (184)
365 3gfo_A Cobalt import ATP-bindi 61.0 3.4 0.00012 36.6 1.9 15 142-156 42-56 (275)
366 1lw7_A Transcriptional regulat 60.9 3.4 0.00012 38.1 2.0 18 142-159 178-195 (365)
367 4g1u_C Hemin import ATP-bindin 60.9 3.4 0.00012 36.4 1.9 16 142-157 45-60 (266)
368 1u0j_A DNA replication protein 60.9 6.6 0.00023 34.6 3.7 16 142-157 112-127 (267)
369 2ixe_A Antigen peptide transpo 60.9 2.8 9.5E-05 37.1 1.3 16 142-157 53-68 (271)
370 2pze_A Cystic fibrosis transme 60.9 3.5 0.00012 35.4 1.9 16 142-157 42-57 (229)
371 1wms_A RAB-9, RAB9, RAS-relate 60.8 4.1 0.00014 32.5 2.3 16 142-157 15-30 (177)
372 2lkc_A Translation initiation 60.7 4 0.00014 32.6 2.2 16 142-157 16-31 (178)
373 2ihy_A ABC transporter, ATP-bi 60.6 3.2 0.00011 36.9 1.7 16 142-157 55-70 (279)
374 1r2q_A RAS-related protein RAB 60.5 4.1 0.00014 32.1 2.2 16 142-157 14-29 (170)
375 4dkx_A RAS-related protein RAB 60.5 4.9 0.00017 34.1 2.8 16 142-157 21-36 (216)
376 1mv5_A LMRA, multidrug resista 60.4 3.6 0.00012 35.6 1.9 16 142-157 36-51 (243)
377 3q72_A GTP-binding protein RAD 60.4 3.7 0.00013 32.4 1.9 15 142-156 10-24 (166)
378 3c5c_A RAS-like protein 12; GD 60.3 4.2 0.00014 33.2 2.3 17 142-158 29-45 (187)
379 1m2o_B GTP-binding protein SAR 60.2 4.1 0.00014 33.3 2.2 16 142-157 31-46 (190)
380 1g16_A RAS-related protein SEC 60.1 4.2 0.00014 32.0 2.2 16 142-157 11-26 (170)
381 2bme_A RAB4A, RAS-related prot 60.1 4.1 0.00014 32.8 2.2 17 142-158 18-34 (186)
382 4gzl_A RAS-related C3 botulinu 60.1 4.1 0.00014 33.8 2.2 17 142-158 38-54 (204)
383 1upt_A ARL1, ADP-ribosylation 60.0 4.2 0.00014 32.1 2.2 16 142-157 15-30 (171)
384 1zcb_A G alpha I/13; GTP-bindi 60.0 3.5 0.00012 38.2 1.9 13 142-154 41-53 (362)
385 3fvq_A Fe(3+) IONS import ATP- 60.0 3.7 0.00013 37.9 2.1 16 142-157 38-53 (359)
386 1vpl_A ABC transporter, ATP-bi 59.8 3.3 0.00011 36.3 1.6 16 142-157 49-64 (256)
387 2og2_A Putative signal recogni 59.8 4 0.00014 37.7 2.3 34 142-178 165-198 (359)
388 1q3t_A Cytidylate kinase; nucl 59.7 4.1 0.00014 34.8 2.2 17 142-158 24-40 (236)
389 3kkq_A RAS-related protein M-R 59.7 4.3 0.00015 32.7 2.2 17 142-158 26-42 (183)
390 1p5z_B DCK, deoxycytidine kina 59.6 1.8 6.2E-05 37.9 -0.1 16 142-157 32-47 (263)
391 4dsu_A GTPase KRAS, isoform 2B 59.6 4.4 0.00015 32.7 2.3 17 142-158 12-28 (189)
392 3q85_A GTP-binding protein REM 59.5 3.9 0.00013 32.3 1.9 15 142-156 10-24 (169)
393 1a7j_A Phosphoribulokinase; tr 59.5 2 7E-05 38.4 0.2 17 142-158 13-29 (290)
394 3pqc_A Probable GTP-binding pr 59.5 3.7 0.00013 33.3 1.8 17 142-158 31-47 (195)
395 3foz_A TRNA delta(2)-isopenten 59.5 4.5 0.00015 36.6 2.4 16 142-157 18-33 (316)
396 2cxx_A Probable GTP-binding pr 59.5 3.5 0.00012 33.3 1.6 16 142-157 9-24 (190)
397 2iwr_A Centaurin gamma 1; ANK 59.4 3.5 0.00012 33.0 1.6 16 142-157 15-30 (178)
398 1g8f_A Sulfate adenylyltransfe 59.3 4.3 0.00015 39.4 2.4 18 142-159 403-420 (511)
399 2efe_B Small GTP-binding prote 59.2 4.5 0.00015 32.4 2.3 17 142-158 20-36 (181)
400 3dz8_A RAS-related protein RAB 59.2 4.7 0.00016 32.8 2.4 17 142-158 31-47 (191)
401 2a9k_A RAS-related protein RAL 59.2 4.4 0.00015 32.5 2.2 17 142-158 26-42 (187)
402 3iev_A GTP-binding protein ERA 59.2 3.9 0.00013 36.8 2.0 16 142-157 18-33 (308)
403 3tmk_A Thymidylate kinase; pho 59.2 11 0.00038 31.9 4.8 18 142-159 13-30 (216)
404 2ghi_A Transport protein; mult 59.2 3.8 0.00013 35.9 1.9 16 142-157 54-69 (260)
405 3bc1_A RAS-related protein RAB 59.1 4.2 0.00015 32.8 2.1 17 142-158 19-35 (195)
406 2qi9_C Vitamin B12 import ATP- 59.0 3.9 0.00013 35.6 1.9 16 142-157 34-49 (249)
407 1svi_A GTP-binding protein YSX 58.9 3.8 0.00013 33.4 1.8 16 142-157 31-46 (195)
408 2qnr_A Septin-2, protein NEDD5 58.7 4 0.00014 36.7 2.0 16 142-157 26-41 (301)
409 3exa_A TRNA delta(2)-isopenten 58.4 4.5 0.00016 36.7 2.3 16 142-157 11-26 (322)
410 3bwd_D RAC-like GTP-binding pr 58.3 4.7 0.00016 32.3 2.2 16 142-157 16-31 (182)
411 2gj8_A MNME, tRNA modification 58.1 4.2 0.00014 32.7 1.9 16 142-157 12-27 (172)
412 1mh1_A RAC1; GTP-binding, GTPa 58.1 4.7 0.00016 32.3 2.2 17 142-158 13-29 (186)
413 2atv_A RERG, RAS-like estrogen 58.1 4.8 0.00016 33.0 2.3 17 142-158 36-52 (196)
414 2nq2_C Hypothetical ABC transp 58.1 4.1 0.00014 35.6 1.9 16 142-157 39-54 (253)
415 1e2k_A Thymidine kinase; trans 58.1 3.7 0.00013 37.5 1.7 18 142-159 12-29 (331)
416 2y8e_A RAB-protein 6, GH09086P 57.9 4.8 0.00016 32.0 2.2 16 142-157 22-37 (179)
417 3llu_A RAS-related GTP-binding 57.9 4 0.00014 33.5 1.7 16 142-157 28-43 (196)
418 1z47_A CYSA, putative ABC-tran 57.9 4.3 0.00015 37.5 2.1 16 142-157 49-64 (355)
419 3f9v_A Minichromosome maintena 57.8 2.4 8.2E-05 42.2 0.4 35 123-157 296-350 (595)
420 2gk6_A Regulator of nonsense t 57.8 15 0.00051 36.5 6.2 43 142-186 203-245 (624)
421 3t5g_A GTP-binding protein RHE 57.8 4.6 0.00016 32.4 2.1 17 142-158 14-30 (181)
422 2fh5_B SR-beta, signal recogni 57.7 4.7 0.00016 33.5 2.2 17 142-158 15-31 (214)
423 2g6b_A RAS-related protein RAB 57.6 4.9 0.00017 32.1 2.2 17 142-158 18-34 (180)
424 2h92_A Cytidylate kinase; ross 57.5 4.9 0.00017 33.7 2.3 16 142-157 11-26 (219)
425 2v9p_A Replication protein E1; 57.2 4.7 0.00016 36.4 2.2 17 142-158 134-150 (305)
426 1gwn_A RHO-related GTP-binding 56.9 5 0.00017 33.4 2.2 17 142-158 36-52 (205)
427 1vg8_A RAS-related protein RAB 56.9 5.1 0.00017 32.9 2.3 17 142-158 16-32 (207)
428 1of1_A Thymidine kinase; trans 56.9 3.7 0.00013 38.2 1.5 18 142-159 57-74 (376)
429 2it1_A 362AA long hypothetical 56.9 4.6 0.00016 37.4 2.1 16 142-157 37-52 (362)
430 2yyz_A Sugar ABC transporter, 56.8 4.6 0.00016 37.4 2.1 16 142-157 37-52 (359)
431 2cjw_A GTP-binding protein GEM 56.7 4.9 0.00017 33.0 2.1 15 142-156 14-28 (192)
432 2oil_A CATX-8, RAS-related pro 56.7 5.1 0.00017 32.6 2.2 17 142-158 33-49 (193)
433 1f6b_A SAR1; gtpases, N-termin 56.7 4.4 0.00015 33.5 1.8 15 142-156 33-47 (198)
434 2ew1_A RAS-related protein RAB 56.6 4.9 0.00017 33.4 2.1 16 142-157 34-49 (201)
435 2bov_A RAla, RAS-related prote 56.6 5.1 0.00017 32.9 2.2 17 142-158 22-38 (206)
436 1g29_1 MALK, maltose transport 56.5 4.6 0.00016 37.5 2.1 16 142-157 37-52 (372)
437 1v43_A Sugar-binding transport 56.5 4.7 0.00016 37.5 2.1 16 142-157 45-60 (372)
438 3bfv_A CAPA1, CAPB2, membrane 56.5 4.6 0.00016 35.6 2.0 30 142-173 91-120 (271)
439 2pjz_A Hypothetical protein ST 56.4 4.6 0.00016 35.5 1.9 16 142-157 38-53 (263)
440 3oes_A GTPase rhebl1; small GT 56.4 5.2 0.00018 32.9 2.2 17 142-158 32-48 (201)
441 3clv_A RAB5 protein, putative; 56.4 5.3 0.00018 32.5 2.3 17 142-158 15-31 (208)
442 2obl_A ESCN; ATPase, hydrolase 56.4 5 0.00017 36.9 2.3 18 142-159 79-96 (347)
443 2il1_A RAB12; G-protein, GDP, 56.4 5 0.00017 32.8 2.1 17 142-158 34-50 (192)
444 3rlf_A Maltose/maltodextrin im 56.4 4.7 0.00016 37.6 2.1 16 142-157 37-52 (381)
445 3a8t_A Adenylate isopentenyltr 56.3 4.5 0.00015 37.0 1.9 16 142-157 48-63 (339)
446 3tw8_B RAS-related protein RAB 56.2 4.8 0.00016 32.1 1.9 16 142-157 17-32 (181)
447 2qmh_A HPR kinase/phosphorylas 56.1 4.3 0.00015 34.2 1.6 16 142-157 42-57 (205)
448 1fzq_A ADP-ribosylation factor 56.1 4.7 0.00016 32.6 1.9 16 142-157 24-39 (181)
449 3tkl_A RAS-related protein RAB 56.1 5.5 0.00019 32.3 2.3 17 142-158 24-40 (196)
450 1nij_A Hypothetical protein YJ 55.9 3.9 0.00013 37.0 1.4 16 142-157 12-27 (318)
451 2rcn_A Probable GTPase ENGC; Y 55.9 8.1 0.00028 35.6 3.6 16 142-157 223-238 (358)
452 3d31_A Sulfate/molybdate ABC t 55.9 4.1 0.00014 37.5 1.6 16 142-157 34-49 (348)
453 2fg5_A RAB-22B, RAS-related pr 55.8 5.5 0.00019 32.5 2.3 17 142-158 31-47 (192)
454 2a5j_A RAS-related protein RAB 55.8 5.4 0.00018 32.5 2.2 16 142-157 29-44 (191)
455 3vkg_A Dynein heavy chain, cyt 55.7 23 0.0008 42.1 7.9 69 142-231 1654-1724(3245)
456 1bif_A 6-phosphofructo-2-kinas 55.7 5.3 0.00018 38.3 2.4 18 142-159 47-64 (469)
457 1zd9_A ADP-ribosylation factor 55.7 5.5 0.00019 32.4 2.2 17 142-158 30-46 (188)
458 2e87_A Hypothetical protein PH 55.6 36 0.0012 30.9 8.1 16 142-157 175-190 (357)
459 1jr3_D DNA polymerase III, del 55.5 50 0.0017 29.6 9.0 139 142-303 26-183 (343)
460 3reg_A RHO-like small GTPase; 55.3 5.6 0.00019 32.4 2.2 17 142-158 31-47 (194)
461 2bbs_A Cystic fibrosis transme 55.2 4.4 0.00015 36.2 1.7 16 142-157 72-87 (290)
462 3cbq_A GTP-binding protein REM 55.2 4.1 0.00014 33.6 1.4 14 142-155 31-44 (195)
463 2v3c_C SRP54, signal recogniti 55.2 3.9 0.00013 38.8 1.4 18 142-159 107-124 (432)
464 3cr8_A Sulfate adenylyltranfer 55.2 4.2 0.00014 39.9 1.6 18 142-159 377-394 (552)
465 2gf0_A GTP-binding protein DI- 55.0 5.8 0.0002 32.3 2.3 16 142-157 16-31 (199)
466 1z06_A RAS-related protein RAB 54.7 5.9 0.0002 32.1 2.3 17 142-158 28-44 (189)
467 3tqf_A HPR(Ser) kinase; transf 54.7 5.9 0.0002 32.6 2.2 15 142-156 24-38 (181)
468 2gf9_A RAS-related protein RAB 54.4 5.7 0.00019 32.2 2.1 17 142-158 30-46 (189)
469 1x3s_A RAS-related protein RAB 54.4 5.9 0.0002 32.1 2.2 17 142-158 23-39 (195)
470 3cio_A ETK, tyrosine-protein k 54.3 5 0.00017 35.9 1.9 30 142-173 113-142 (299)
471 1zbd_A Rabphilin-3A; G protein 54.2 5.3 0.00018 32.8 1.9 17 142-158 16-32 (203)
472 2atx_A Small GTP binding prote 53.9 6.2 0.00021 32.1 2.3 16 142-157 26-41 (194)
473 2bcg_Y Protein YP2, GTP-bindin 53.8 5.8 0.0002 32.7 2.1 17 142-158 16-32 (206)
474 2axn_A 6-phosphofructo-2-kinas 53.8 5.9 0.0002 38.6 2.4 18 142-159 43-60 (520)
475 2p5s_A RAS and EF-hand domain 53.7 6.1 0.00021 32.4 2.2 16 142-157 36-51 (199)
476 2q3h_A RAS homolog gene family 53.7 5.1 0.00017 32.9 1.7 17 142-158 28-44 (201)
477 2fv8_A H6, RHO-related GTP-bin 53.4 6.3 0.00022 32.6 2.3 16 142-157 33-48 (207)
478 3gd7_A Fusion complex of cysti 53.4 5.5 0.00019 37.2 2.1 15 142-156 55-69 (390)
479 2h17_A ADP-ribosylation factor 53.4 5.4 0.00018 32.1 1.8 16 142-157 29-44 (181)
480 2o52_A RAS-related protein RAB 53.2 5.2 0.00018 33.0 1.7 16 142-157 33-48 (200)
481 2j0v_A RAC-like GTP-binding pr 52.5 6.5 0.00022 32.6 2.2 17 142-158 17-33 (212)
482 3tui_C Methionine import ATP-b 52.5 6 0.00021 36.6 2.1 15 142-156 62-76 (366)
483 3la6_A Tyrosine-protein kinase 52.5 7.5 0.00026 34.6 2.7 31 142-174 101-131 (286)
484 2dpy_A FLII, flagellum-specifi 52.4 6.2 0.00021 37.5 2.3 18 142-159 165-182 (438)
485 2npi_A Protein CLP1; CLP1-PCF1 52.4 5.6 0.00019 38.1 2.0 17 142-158 146-162 (460)
486 3e1s_A Exodeoxyribonuclease V, 52.4 11 0.00036 37.3 4.0 18 142-159 212-229 (574)
487 1zj6_A ADP-ribosylation factor 52.2 5.7 0.0002 32.1 1.8 16 142-157 24-39 (187)
488 2j1l_A RHO-related GTP-binding 52.2 5.6 0.00019 33.2 1.7 16 142-157 42-57 (214)
489 2hup_A RAS-related protein RAB 52.1 6.8 0.00023 32.3 2.3 16 142-157 37-52 (201)
490 1ksh_A ARF-like protein 2; sma 51.8 5.1 0.00017 32.3 1.4 17 142-158 26-42 (186)
491 2gza_A Type IV secretion syste 51.7 5.7 0.00019 36.7 1.8 17 142-158 183-199 (361)
492 1oxx_K GLCV, glucose, ABC tran 51.6 4.1 0.00014 37.6 0.8 16 142-157 39-54 (353)
493 2gco_A H9, RHO-related GTP-bin 51.4 6.7 0.00023 32.3 2.1 17 142-158 33-49 (201)
494 1c9k_A COBU, adenosylcobinamid 51.3 6.6 0.00022 32.4 2.0 30 142-177 7-36 (180)
495 1x6v_B Bifunctional 3'-phospho 51.2 6.7 0.00023 39.1 2.4 17 142-158 60-76 (630)
496 3eph_A TRNA isopentenyltransfe 51.1 7.1 0.00024 36.7 2.4 17 142-158 10-26 (409)
497 2g3y_A GTP-binding protein GEM 51.1 6.5 0.00022 33.1 2.0 15 142-156 45-59 (211)
498 3q3j_B RHO-related GTP-binding 51.0 7.1 0.00024 32.6 2.2 17 142-158 35-51 (214)
499 1m8p_A Sulfate adenylyltransfe 51.0 6.8 0.00023 38.7 2.4 18 142-159 404-421 (573)
500 3jvv_A Twitching mobility prot 51.0 6.8 0.00023 36.1 2.2 18 142-159 131-148 (356)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-36 Score=303.94 Aligned_cols=234 Identities=11% Similarity=0.049 Sum_probs=181.4
Q ss_pred cccHHHHHHHHHHhhcC------------CCCccHHHHHHHHHH--HhhhcCCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 045120 125 ESRVSNLKSTQNALTNA------------NGGIGKTTLAKEFAK--QAREDKLFDRVVFSEVSQTS--DIKKIQGDIAEK 188 (374)
Q Consensus 125 vGr~~~~~~i~~~L~~~------------~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 188 (374)
+||+.++++|.++|..+ |||+||||||+++|+ +.++..+|++++||++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999632 999999999999999 67888999999999999985 899999999999
Q ss_pred hCcCCc--------hhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccccccccCcCCCC-----CcchhHhhhhcC-CCCc
Q 045120 189 LGLELS--------EEAEYRRASRLYERLKNENKILVILANIWKLLDLETVKIPFRND-----SRDNNVVLLSMG-SKDN 254 (374)
Q Consensus 189 l~~~~~--------~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~~~~l~~~~~~~-----TR~~~va~~~~~-~~~~ 254 (374)
++.... ..+...+...+++.|.++|||||||||||+..++ .+. ..+.+ ||+..++. .++ ...+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-~~~gs~ilvTTR~~~v~~-~~~~~~~~ 287 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-QELRLRCLVTTRDVEISN-AASQTCEF 287 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-HHTTCEEEEEESBGGGGG-GCCSCEEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-ccCCCEEEEEcCCHHHHH-HcCCCCeE
Confidence 986521 1234567789999999833999999999998754 221 11333 99999974 444 3467
Q ss_pred eecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc--CCCccccccccccc-----CCCCccc
Q 045120 255 FLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS--KSSSIYSHVSNDYQ-----SIYKPKP 327 (374)
Q Consensus 255 ~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~~~~~~~W~~~~~~-----~~~~~~~ 327 (374)
|+|++|+.++||+||.+.++....++.+.+++++|+++| +|+||||+++|+ +.++ .+|...... ...++.+
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c-~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~ 365 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS-SGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVEC 365 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHH-TTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCC
T ss_pred EECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-CCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHH
Confidence 999999999999999999986554578889999999999 999999999999 4432 223111110 1233334
Q ss_pred chhh-cccCCchhhhhhhc---------------CchhhhhcHHHHHHHHHhC--Ccce
Q 045120 328 YLAV-FQDLEPTIVKTAFV---------------DPKWYLALKEEFEALQRNQ--TWSL 368 (374)
Q Consensus 328 ~~~l-y~~Lp~~~lk~cfL---------------fp~~~~i~~~~Li~~W~~~--~~~~ 368 (374)
.+.+ |++||++ +|.||+ ||+++.|+ |++|+|+ ||..
T Consensus 366 ~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~ 419 (549)
T 2a5y_B 366 ITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDIC 419 (549)
T ss_dssp CSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC---
T ss_pred HHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceec
Confidence 5666 9999885 999973 99999999 8999999 7764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=6.5e-31 Score=271.08 Aligned_cols=226 Identities=14% Similarity=0.050 Sum_probs=172.7
Q ss_pred ccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCcC
Q 045120 124 FESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDR-VVFSEVSQTSDIKKIQGDIAEKLGLE 192 (374)
Q Consensus 124 ~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~ 192 (374)
.+||+.++++|.++|... |||+||||||+++|++.++..+|+. ++|+++++.++...++..|+..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 499999999999999862 9999999999999998888888986 99999999999988888887754321
Q ss_pred ---C----c-----hhhHHHHHHHHHHHHh--cCCeEEEEEeCCCCccccccccCcCCCC----CcchhHhhhhcCCCCc
Q 045120 193 ---L----S-----EEAEYRRASRLYERLK--NENKILVILANIWKLLDLETVKIPFRND----SRDNNVVLLSMGSKDN 254 (374)
Q Consensus 193 ---~----~-----~~~~~~~~~~l~~~L~--~~kr~LlVlDdv~~~~~~~~l~~~~~~~----TR~~~va~~~~~~~~~ 254 (374)
. . ..+.+.....+++.|+ .+||+||||||||+.+.|+.+. .++. ||+..++. .+.....
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--pGSRILVTTRd~~Va~-~l~g~~v 286 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--LSCKILLTTRFKQVTD-FLSAATT 286 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--SSCCEEEECSCSHHHH-HHHHHSS
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--CCeEEEEeccChHHHH-hcCCCeE
Confidence 0 0 1133455667777762 2389999999999988888763 1222 99999874 2333346
Q ss_pred eecC------CCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc--CCC--cccccccccccCCCC
Q 045120 255 FLIA------NITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS--KSS--SIYSHVSNDYQSIYK 324 (374)
Q Consensus 255 ~~l~------~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~~~--~~~~W~~~~~~~~~~ 324 (374)
|.|+ +|+.+|||+||++..+.. ..++..+| | +|+||||+++|+ +.+ +.++|..... ..
T Consensus 287 y~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---C-gGLPLALkLaGs~Lr~k~~s~eeW~~~~~---~~ 354 (1221)
T 1vt4_I 287 THISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---L-TTNPRRLSIIAESIRDGLATWDNWKHVNC---DK 354 (1221)
T ss_dssp CEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---C-CCCHHHHHHHHHHHHHSCSSHHHHHHCSC---HH
T ss_pred EEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---h-CCCHHHHHHHHHHHhCCCCCHHHHhcCCh---hH
Confidence 7777 999999999999986432 12333344 9 999999999999 333 6778876522 12
Q ss_pred cccchhh-cccCCchhh-hhhhc----CchhhhhcHHHHHHHHHhCC
Q 045120 325 PKPYLAV-FQDLEPTIV-KTAFV----DPKWYLALKEEFEALQRNQT 365 (374)
Q Consensus 325 ~~~~~~l-y~~Lp~~~l-k~cfL----fp~~~~i~~~~Li~~W~~~~ 365 (374)
....+.+ |+.||++ . |+||+ ||+++.|+++.++.+|+++|
T Consensus 355 I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 355 LTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 2224555 9999986 7 99995 99999999999999999886
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=4.4e-29 Score=272.05 Aligned_cols=242 Identities=17% Similarity=0.180 Sum_probs=181.9
Q ss_pred cccccccccccHHHHHHHHHHhhcC-----------CCCccHHHHHHHHHHHhhh-cCCC-CeEEEEEeCCCCC--HHHH
Q 045120 117 SNKVYEAFESRVSNLKSTQNALTNA-----------NGGIGKTTLAKEFAKQARE-DKLF-DRVVFSEVSQTSD--IKKI 181 (374)
Q Consensus 117 ~~~~~~~~vGr~~~~~~i~~~L~~~-----------~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~ 181 (374)
+|.....|+||+.++++|.++|... |||+||||||+++|++... ..+| +.++||++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4455667999999999999999532 9999999999999997643 4445 6788999998543 4555
Q ss_pred HHHHHHHhCcCCc-----hhhHHHHHHHHHHHHhc-CCeEEEEEeCCCCccccccccCcCCCC-----CcchhHhhhhcC
Q 045120 182 QGDIAEKLGLELS-----EEAEYRRASRLYERLKN-ENKILVILANIWKLLDLETVKIPFRND-----SRDNNVVLLSMG 250 (374)
Q Consensus 182 ~~~i~~~l~~~~~-----~~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~-----TR~~~va~~~~~ 250 (374)
+..++..+..... ..+.+.....++..|.+ ++|+||||||||+..+|..+. +.. ||+..++...++
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~---~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD---NQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTC---SSCEEEEEESSTTTTTTCCS
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhc---CCCEEEEEcCCHHHHHhhcC
Confidence 7777777765421 23556777888888876 139999999999998888762 222 999998743456
Q ss_pred CCCceecCC-CCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc--CCCccccccc-----------
Q 045120 251 SKDNFLIAN-ITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS--KSSSIYSHVS----------- 316 (374)
Q Consensus 251 ~~~~~~l~~-L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~~~~~~~W~~----------- 316 (374)
....+++++ |+.++|++||...++.. .+.+.+++++|+++| +|+||||+++|+ +.+. ..|..
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~-~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKEC-KGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHT-TTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHh-CCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhh
Confidence 677899996 99999999999998633 344567789999999 999999999999 3333 34521
Q ss_pred -ccccCCC---Ccccchhh-cccCCchhhhhhhc----CchhhhhcHHHHHHHHHhCCc
Q 045120 317 -NDYQSIY---KPKPYLAV-FQDLEPTIVKTAFV----DPKWYLALKEEFEALQRNQTW 366 (374)
Q Consensus 317 -~~~~~~~---~~~~~~~l-y~~Lp~~~lk~cfL----fp~~~~i~~~~Li~~W~~~~~ 366 (374)
+...... .....+.+ |+.||++ +|+||+ ||+++.|+++.++.+|.+++.
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~ 409 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLETE 409 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCHH
T ss_pred hcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCHH
Confidence 1111111 11123444 9999986 999995 999999999999999987643
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.93 E-value=5.5e-26 Score=230.02 Aligned_cols=235 Identities=15% Similarity=0.201 Sum_probs=168.4
Q ss_pred ccccccccccHHHHHHHHHHhhc---C--------CCCccHHHHHHHHHHHhhh-cCCC-CeEEEEEeCCCCCHHHHHHH
Q 045120 118 NKVYEAFESRVSNLKSTQNALTN---A--------NGGIGKTTLAKEFAKQARE-DKLF-DRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~~---~--------~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~ 184 (374)
|..+..||||+.++++|.++|.. + |||+||||||.+++++..+ ..+| +.++|++++.. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 44556799999999999999973 1 9999999999999997655 6779 58999999876 33333333
Q ss_pred ---HHHHhCcC-----CchhhHHHHHHHHHHHHhcC-CeEEEEEeCCCCccccccccCcCCCC------CcchhHhhhhc
Q 045120 185 ---IAEKLGLE-----LSEEAEYRRASRLYERLKNE-NKILVILANIWKLLDLETVKIPFRND------SRDNNVVLLSM 249 (374)
Q Consensus 185 ---i~~~l~~~-----~~~~~~~~~~~~l~~~L~~~-kr~LlVlDdv~~~~~~~~l~~~~~~~------TR~~~va~~~~ 249 (374)
++..++.. ....+.......+.+.|.+. +++||||||||+...+..+ +.+ ||+..++. ..
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l----~~~~~ilvTsR~~~~~~-~~ 273 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----DSQCQILLTTRDKSVTD-SV 273 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT----CSSCEEEEEESCGGGGT-TC
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh----cCCCeEEEECCCcHHHH-hc
Confidence 34455421 12234566777888888753 6899999999988776654 222 88888753 22
Q ss_pred CCCCceec---CCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc--CCCccccccccc------
Q 045120 250 GSKDNFLI---ANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS--KSSSIYSHVSND------ 318 (374)
Q Consensus 250 ~~~~~~~l---~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~--~~~~~~~W~~~~------ 318 (374)
. ...+++ ++|+.+++++||...++.. .....+.+.+|+++| +|+||||.++|+ +.. ...|....
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~-~G~PLal~~~a~~l~~~-~~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKEC-KGSPLVVSLIGALLRDF-PNRWEYYLKQLQNK 348 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHH-TTCHHHHHHHHHHHHHS-TTCHHHHHHHHHSC
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHh-CCCcHHHHHHHHHHhcC-chhHHHHHHHHHHh
Confidence 2 234554 5899999999999998742 223346788999999 999999999999 332 23573211
Q ss_pred -ccCCC--------Ccccchhh-cccCCchhhhhhhc----CchhhhhcHHHHHHHHHhC
Q 045120 319 -YQSIY--------KPKPYLAV-FQDLEPTIVKTAFV----DPKWYLALKEEFEALQRNQ 364 (374)
Q Consensus 319 -~~~~~--------~~~~~~~l-y~~Lp~~~lk~cfL----fp~~~~i~~~~Li~~W~~~ 364 (374)
...+. .....+.. |+.||++ .|.||+ ||+++.|+.+.++.+|.++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 01111 11112333 9999986 999995 9999999999999999765
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.32 E-value=1.8e-11 Score=114.77 Aligned_cols=181 Identities=10% Similarity=0.079 Sum_probs=114.9
Q ss_pred cccccccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC------CHHHHHH
Q 045120 117 SNKVYEAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS------DIKKIQG 183 (374)
Q Consensus 117 ~~~~~~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~ 183 (374)
++..+..|+||+.++++|.+++..+ ++|+|||||++++.+.. + .+|+++.... +...++.
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 3444567999999999999998754 99999999999998753 2 6777765432 5666777
Q ss_pred HHHHHhCc-----------------CC--chhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc---------cccccC--
Q 045120 184 DIAEKLGL-----------------EL--SEEAEYRRASRLYERLKNENKILVILANIWKLLD---------LETVKI-- 233 (374)
Q Consensus 184 ~i~~~l~~-----------------~~--~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~---------~~~l~~-- 233 (374)
.+...+.. .. ...+..+....+.+.+...++++|||||++.... +..+..
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 77665542 00 0123344555565555431389999999986432 122211
Q ss_pred -cCCCC-----CcchhHhhh----------hcCC-CCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC
Q 045120 234 -PFRND-----SRDNNVVLL----------SMGS-KDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG 296 (374)
Q Consensus 234 -~~~~~-----TR~~~va~~----------~~~~-~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G 296 (374)
..+.. ++....... ..+. ...+.+.+|+.+++.+++........... -.+....|+..| ||
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~t-gG 237 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELL-DG 237 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHH-TT
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh-CC
Confidence 11111 232221110 0111 23789999999999999987643211111 135667999999 99
Q ss_pred chHHHHHHhc
Q 045120 297 LFCTLTTNAS 306 (374)
Q Consensus 297 lPLai~~ig~ 306 (374)
+|+++..++.
T Consensus 238 ~P~~l~~~~~ 247 (350)
T 2qen_A 238 IPGWLVVFGV 247 (350)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999885
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.17 E-value=3.7e-10 Score=108.42 Aligned_cols=181 Identities=16% Similarity=0.152 Sum_probs=118.5
Q ss_pred ccccccHHHHHHHHHHh-h--------cC---------CCCccHHHHHHHHHHHhhhc---CCCC-eEEEEEeCCCCCHH
Q 045120 122 EAFESRVSNLKSTQNAL-T--------NA---------NGGIGKTTLAKEFAKQARED---KLFD-RVVFSEVSQTSDIK 179 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L-~--------~~---------~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 179 (374)
..|+||+.++++|.++| . .. ++|+||||||+.+++..... ..|+ .++|++.....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56999999999999988 3 22 78999999999999865431 1233 35788777778899
Q ss_pred HHHHHHHHHhCcCCc--hhhHHHHHHHHHHHHh-cCCeEEEEEeCCCCc--------cccccccCc---CC-----CC--
Q 045120 180 KIQGDIAEKLGLELS--EEAEYRRASRLYERLK-NENKILVILANIWKL--------LDLETVKIP---FR-----ND-- 238 (374)
Q Consensus 180 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~L~-~~kr~LlVlDdv~~~--------~~~~~l~~~---~~-----~~-- 238 (374)
.++..|+..++...+ ..+.......+.+.|. .+++++|||||++.. ..+..+... ++ ..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999976533 2234455666777765 237999999999863 222222111 11 12
Q ss_pred ----CcchhHhhh-------h-cCCCCceecCCCCHHHHHHHHHHhcC---CCCCCcchHHHHHHHHHHccC------Cc
Q 045120 239 ----SRDNNVVLL-------S-MGSKDNFLIANITEEEAWRLFKIMNG---DDVENCKFKSTAINVAKACGA------GL 297 (374)
Q Consensus 239 ----TR~~~va~~-------~-~~~~~~~~l~~L~~~~s~~Lf~~~a~---~~~~~~~l~~~~~~I~~~c~~------Gl 297 (374)
|+...+... . ......+.+++|+.++++++|...+. ... .--.+....|++.| + |.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~-~~~~~~~G~ 258 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVY-GEDKGGDGS 258 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHH-CGGGTSCCC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHH-HHhccCCCc
Confidence 444332100 0 01112399999999999999976542 211 11145677899999 8 99
Q ss_pred hHHHHHHh
Q 045120 298 FCTLTTNA 305 (374)
Q Consensus 298 PLai~~ig 305 (374)
|..+..+.
T Consensus 259 p~~~~~l~ 266 (412)
T 1w5s_A 259 ARRAIVAL 266 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 97655443
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=2.5e-10 Score=107.14 Aligned_cols=178 Identities=12% Similarity=0.162 Sum_probs=106.1
Q ss_pred ccccccccccHHHHHHHHHHhhcC------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-----CCHHHHHHHHH
Q 045120 118 NKVYEAFESRVSNLKSTQNALTNA------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-----SDIKKIQGDIA 186 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~~~------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~ 186 (374)
+..+..|+||+.+++.|.+ +... ++|+|||||++++.+... . ..+|+++... .+...++..+.
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 3345679999999999999 7645 999999999999998653 2 2578887642 34455555554
Q ss_pred HHhCc------------------CCc----hhh----HHHHHHHHHHHHhc-C-CeEEEEEeCCCCcc-----ccc-ccc
Q 045120 187 EKLGL------------------ELS----EEA----EYRRASRLYERLKN-E-NKILVILANIWKLL-----DLE-TVK 232 (374)
Q Consensus 187 ~~l~~------------------~~~----~~~----~~~~~~~l~~~L~~-~-kr~LlVlDdv~~~~-----~~~-~l~ 232 (374)
+.+.. ..+ ..+ .......+.+.|.. . ++++|||||++... .+. .+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHH
Confidence 44310 000 000 01112334444432 1 38999999997532 221 121
Q ss_pred C---cCCCC-----CcchhHhhhh---------c-CC-CCceecCCCCHHHHHHHHHHhcCC-CCCCcchHHHHHHHHHH
Q 045120 233 I---PFRND-----SRDNNVVLLS---------M-GS-KDNFLIANITEEEAWRLFKIMNGD-DVENCKFKSTAINVAKA 292 (374)
Q Consensus 233 ~---~~~~~-----TR~~~va~~~---------~-~~-~~~~~l~~L~~~~s~~Lf~~~a~~-~~~~~~l~~~~~~I~~~ 292 (374)
. ..+.. +|........ . +. ...+.+.+|+.+++.+++...... ....+.. ..|+..
T Consensus 163 ~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~ 238 (357)
T 2fna_A 163 YAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEK 238 (357)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHH
T ss_pred HHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHH
Confidence 1 11111 3433221100 1 11 247899999999999999876431 1111221 689999
Q ss_pred ccCCchHHHHHHhc
Q 045120 293 CGAGLFCTLTTNAS 306 (374)
Q Consensus 293 c~~GlPLai~~ig~ 306 (374)
| +|+|+++..++.
T Consensus 239 t-~G~P~~l~~~~~ 251 (357)
T 2fna_A 239 I-GGIPGWLTYFGF 251 (357)
T ss_dssp H-CSCHHHHHHHHH
T ss_pred h-CCCHHHHHHHHH
Confidence 9 999999999886
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.91 E-value=4.8e-09 Score=99.36 Aligned_cols=182 Identities=15% Similarity=0.110 Sum_probs=115.4
Q ss_pred cccccccHHHHHHHHHHhhc----C---------CCCccHHHHHHHHHHHhhhcCC-CCeEEEEEeCCCCCHHHHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTN----A---------NGGIGKTTLAKEFAKQAREDKL-FDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~----~---------~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
+..|+||+.+++.+.+++.. . ++|+||||||+.+++....... --..+|++.....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 35699999999999998873 1 8999999999999986543210 12467777766677888888888
Q ss_pred HHhCcCCch--hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCc------cccccccCcC---CC-C------CcchhHh--
Q 045120 187 EKLGLELSE--EAEYRRASRLYERLKN-ENKILVILANIWKL------LDLETVKIPF---RN-D------SRDNNVV-- 245 (374)
Q Consensus 187 ~~l~~~~~~--~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~------~~~~~l~~~~---~~-~------TR~~~va-- 245 (374)
..++..... .+..+....+.+.+.. +++.+||||+++.. ..+..+...+ +. . |+.....
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 888654322 2345556667777764 24899999999752 2222221111 11 1 3332211
Q ss_pred -----hhhcCCCCceecCCCCHHHHHHHHHHhcCC-CCCCcchHHHHHHHHHHccC---CchHHHHHH
Q 045120 246 -----LLSMGSKDNFLIANITEEEAWRLFKIMNGD-DVENCKFKSTAINVAKACGA---GLFCTLTTN 304 (374)
Q Consensus 246 -----~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~-~~~~~~l~~~~~~I~~~c~~---GlPLai~~i 304 (374)
.... ....+.+++++.++..++|...+.. .....--.++...|++.+ + |.|..+..+
T Consensus 179 ~~~~~~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~G~~r~~~~l 244 (386)
T 2qby_A 179 LDPRVKSSL-SEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALA-AREHGDARRALDL 244 (386)
T ss_dssp CTTHHHHTT-TTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred hCHHHhccC-CCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-HHhcCCHHHHHHH
Confidence 0111 1147999999999999999986531 001111235566777777 7 999854433
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=1.7e-08 Score=95.87 Aligned_cols=177 Identities=16% Similarity=0.117 Sum_probs=114.3
Q ss_pred ccccccHHHHHHHHHHhhc------C-------CCCccHHHHHHHHHHHhhhc----CC--CCeEEEEEeCCCC-CHHHH
Q 045120 122 EAFESRVSNLKSTQNALTN------A-------NGGIGKTTLAKEFAKQARED----KL--FDRVVFSEVSQTS-DIKKI 181 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~------~-------~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~ 181 (374)
..++||+.+++++.++|.. . ++|+||||||+.+++..... .. ....+|++.+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5699999999999988764 1 89999999999999865321 11 2346788777766 88889
Q ss_pred HHHHHHHh-CcCCc--hhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------c-cccccCcCCCC-----Ccchh---
Q 045120 182 QGDIAEKL-GLELS--EEAEYRRASRLYERLKNENKILVILANIWKLL------D-LETVKIPFRND-----SRDNN--- 243 (374)
Q Consensus 182 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~------~-~~~l~~~~~~~-----TR~~~--- 243 (374)
+..++..+ +.... ..+.......+.+.+.. ++.+|||||++... . +..+....+.. |+...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 99998888 32211 12334556777778876 45599999997532 1 22332222111 43321
Q ss_pred -Hh---hhhcCCCCceecCCCCHHHHHHHHHHhcC---C-CCCCcchHHHHHHHHHHccC---CchH-HHHHHh
Q 045120 244 -VV---LLSMGSKDNFLIANITEEEAWRLFKIMNG---D-DVENCKFKSTAINVAKACGA---GLFC-TLTTNA 305 (374)
Q Consensus 244 -va---~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~---~-~~~~~~l~~~~~~I~~~c~~---GlPL-ai~~ig 305 (374)
+. ....+ ..+.+++++.++..++|...+. . ...+ .+....|++.| + |.|. ++.++-
T Consensus 179 ~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~-~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 179 YMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAIS-AKEHGDARKAVNLLF 246 (384)
T ss_dssp TSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHH-HTTCCCHHHHHHHHH
T ss_pred hhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHH-HhccCCHHHHHHHHH
Confidence 11 11222 2899999999999999998753 1 1122 24556788888 7 8776 444433
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.88 E-value=2e-08 Score=88.35 Aligned_cols=178 Identities=11% Similarity=0.143 Sum_probs=97.9
Q ss_pred ccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++||+..++.+..++..+ ++|+||||||+.+++.......+.. ........ ...+....
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~ 93 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGR 93 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTC
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccC
Confidence 3456999999999999998754 8899999999999986543221100 00000000 00111000
Q ss_pred Cc-----CCchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cccccccCcC---CCC------Ccch-hHhhhh
Q 045120 190 GL-----ELSEEAEYRRASRLYERLK----NENKILVILANIWKL--LDLETVKIPF---RND------SRDN-NVVLLS 248 (374)
Q Consensus 190 ~~-----~~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~--~~~~~l~~~~---~~~------TR~~-~va~~~ 248 (374)
.. .............+.+.+. .+++.+|||||++.. ..+..+...+ +.. |+.. .+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 00 0000011111222222221 126799999999753 2333332211 222 3222 221111
Q ss_pred cCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 249 MGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 249 ~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
......+.+++++.++..+++...+...... --.+....|++.| +|.|..+..+..
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~-~G~~~~~~~~~~ 229 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAA-EGSLRDALSLTD 229 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 2223579999999999999999877522111 1135567899999 999999887764
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.78 E-value=5.4e-08 Score=92.16 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=112.7
Q ss_pred ccccccHHHHHHHHHHhhc----C---------CCCccHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCCCHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTN----A---------NGGIGKTTLAKEFAKQARED----KLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~----~---------~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
..++||+.+++++.++|.. . ++|+||||||+.+++..... +.--..+|++.....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6699999999999998842 1 88999999999999865321 10124577887888888999999
Q ss_pred HHHHhCcCCch--hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc-------ccccccCc---C--CCC------Ccch-
Q 045120 185 IAEKLGLELSE--EAEYRRASRLYERLKN-ENKILVILANIWKLL-------DLETVKIP---F--RND------SRDN- 242 (374)
Q Consensus 185 i~~~l~~~~~~--~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~~-------~~~~l~~~---~--~~~------TR~~- 242 (374)
++..++...+. .+..+....+.+.+.. +++.+||||++.... .+..+... . +.. |+..
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99999765332 2345556677777753 368999999998532 12221111 1 111 3322
Q ss_pred -------hHhhhhcCCCCceecCCCCHHHHHHHHHHhcC---C-CCCCcchHHHHHHHHHHccC---CchH
Q 045120 243 -------NVVLLSMGSKDNFLIANITEEEAWRLFKIMNG---D-DVENCKFKSTAINVAKACGA---GLFC 299 (374)
Q Consensus 243 -------~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~---~-~~~~~~l~~~~~~I~~~c~~---GlPL 299 (374)
.+. ... ....+.+++++.++..+++...+. . ...++ +....|++.+ + |.|-
T Consensus 179 ~~~~l~~~l~-~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~-~~~~G~~r 243 (387)
T 2v1u_A 179 FVENLEPRVK-SSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALA-AREHGDAR 243 (387)
T ss_dssp TSSSSCHHHH-TTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHH-HSSSCCHH
T ss_pred hHhhhCHHHH-hcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHH-HHhccCHH
Confidence 111 111 114789999999999999998753 1 11222 3456777888 7 9994
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.71 E-value=2.2e-07 Score=80.44 Aligned_cols=169 Identities=10% Similarity=0.061 Sum_probs=95.5
Q ss_pred ccccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 120 VYEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
....++|++..++.+.+++... ++|+|||+||+.+++.......-...+.++.+...+...+...+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhc
Confidence 3456999999999999998764 7899999999999886432211112334443333333222221111111
Q ss_pred cCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ccccccC---cCCCC------Ccch-hHhhhhcCCCCceecC
Q 045120 191 LELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVKI---PFRND------SRDN-NVVLLSMGSKDNFLIA 258 (374)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~------TR~~-~va~~~~~~~~~~~l~ 258 (374)
.. .+...++.+|||||++... ..+.+.. ..+.+ |+.. .+..........+.+.
T Consensus 95 ~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 95 TA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp SC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 00 0111368899999997542 2222211 11222 2221 1111111222378999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 259 NITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 259 ~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
+++.++..+++.+.+...... --.+....|++.+ +|.|..+..+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~-~g~~r~l~~~l 204 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYIS-GGDFRKAINAL 204 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 999999999999877421111 1134566888999 99999655443
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.51 E-value=3.2e-06 Score=80.03 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=109.7
Q ss_pred ccccccHHHHHHHHHHhhc----------C-----CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 122 EAFESRVSNLKSTQNALTN----------A-----NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~----------~-----~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
..++||+.+++++.+++.. . +.|+||||||+.+++....... -..++++.+...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5699999999999988864 2 7899999999999986542211 2467777777788889999999
Q ss_pred HHhCcCCch--hhHHHHHHHHHHHHhc-CCeEEEEEeCCCCc--cccccccCcC---C----CC------CcchhHhh--
Q 045120 187 EKLGLELSE--EAEYRRASRLYERLKN-ENKILVILANIWKL--LDLETVKIPF---R----ND------SRDNNVVL-- 246 (374)
Q Consensus 187 ~~l~~~~~~--~~~~~~~~~l~~~L~~-~kr~LlVlDdv~~~--~~~~~l~~~~---~----~~------TR~~~va~-- 246 (374)
..++..... .+.......+.+.+.. +++.+||||++... ..+..+...+ + .+ |+......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 998764332 2345555666666653 36899999999764 2222221111 1 12 33322110
Q ss_pred -----hhcCCCCceecCCCCHHHHHHHHHHhcCCC-CCCcchHHHHHHHHHHc
Q 045120 247 -----LSMGSKDNFLIANITEEEAWRLFKIMNGDD-VENCKFKSTAINVAKAC 293 (374)
Q Consensus 247 -----~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~-~~~~~l~~~~~~I~~~c 293 (374)
... ....+.+++++.++..+++...+... ....--.+....|++.+
T Consensus 176 ~~~~~~r~-~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 176 DPSTRGIM-GKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp CHHHHHHH-TTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred CHHhhhcC-CCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 111 12369999999999999998876310 00111135566788888
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=2.3e-06 Score=78.90 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=95.8
Q ss_pred ccccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 120 VYEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
....++|++..++.+.+++..+ ++|+||||+|+.+++...........++++.+...+...+ ++++..+.
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 3456999999999999998765 8899999999999986432111112344443333232221 12222111
Q ss_pred cCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ccccccCc---CCCC------Ccc-hhHhhhhcCCCCceecC
Q 045120 191 LELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVKIP---FRND------SRD-NNVVLLSMGSKDNFLIA 258 (374)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~~---~~~~------TR~-~~va~~~~~~~~~~~l~ 258 (374)
... ..+..+++.+||+||++... .++.+... .+.+ |+. ..+..........+.+.
T Consensus 98 ~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 98 QKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp HBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 000 00102258999999997532 22222211 1222 222 11111111223379999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH-HHHHHhc
Q 045120 259 NITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC-TLTTNAS 306 (374)
Q Consensus 259 ~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL-ai~~ig~ 306 (374)
+++.++..+++...+...... --.+....|++.| +|.|. |+..+..
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~-~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTA-EGDMRQAINNLQS 211 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 999999999999876421111 1135567899999 99995 4555543
No 15
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.26 E-value=3.4e-06 Score=65.72 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhchhhHHHHHHHH
Q 045120 8 LVLELVKWLAPPTERQLVYLRKRNYNANLENLKAELEKLKVERTS------------IQLRVSEAKEKGEEIEEKVEKWL 75 (374)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~------------v~~~i~~a~~~~~~~~~~v~~wl 75 (374)
+++.++++|.+.+.+++..+ .++.++++.++++|+.|++.|.+ ++.|+.++++.+|++||++++|.
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~--~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLH--KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999 99999999999999999999865 57799999999999999999998
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3e-05 Score=71.43 Aligned_cols=151 Identities=10% Similarity=0.097 Sum_probs=91.0
Q ss_pred cccccHHHHHHHHHHhhcC-------------CCCccHHHHHHHHHHHhhhcCC---CC--eEEEEEeCCCCCHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTNA-------------NGGIGKTTLAKEFAKQAREDKL---FD--RVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~~-------------~gGiGKTtLA~~v~~~~~~~~~---F~--~~~wv~vs~~~~~~~~~~~ 184 (374)
.+.|||+++++|...|... ++|+|||++++.|.+....... .. .+++|+.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999998877642 8999999999999997643211 11 3456666666788899999
Q ss_pred HHHHhCcCCch-hhHHHHHHHHHHHH--hcCCeEEEEEeCCCCcc---ccccccC--cCCCC----------Ccc--hhH
Q 045120 185 IAEKLGLELSE-EAEYRRASRLYERL--KNENKILVILANIWKLL---DLETVKI--PFRND----------SRD--NNV 244 (374)
Q Consensus 185 i~~~l~~~~~~-~~~~~~~~~l~~~L--~~~kr~LlVlDdv~~~~---~~~~l~~--~~~~~----------TR~--~~v 244 (374)
|++++...... .........+.+.+ ..++.++++||++.... .+..+.. ..... +-. ..+
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 99999644211 11122333444443 12368999999997642 1221110 01111 111 111
Q ss_pred h---hhhcCCCCceecCCCCHHHHHHHHHHhcC
Q 045120 245 V---LLSMGSKDNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 245 a---~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
. ...++ ...+.+.+++.++-.+++...+.
T Consensus 181 ~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 0 11222 23688999999999999988763
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=1e-05 Score=74.57 Aligned_cols=162 Identities=10% Similarity=0.096 Sum_probs=90.9
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCC-CeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLF-DRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|++..++.+.+++..+ +.|+||||+|+.+++..... .+ ...+.++.+.......
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~---------- 92 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINV---------- 92 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHT----------
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHH----------
Confidence 456999999999999998765 88999999999999864311 11 1123333222111100
Q ss_pred cCCchhhHHHHHHHHHHHH-----hcCCeEEEEEeCCCCc--cccccccCc---CCCC------Ccc-hhHhhhhcCCCC
Q 045120 191 LELSEEAEYRRASRLYERL-----KNENKILVILANIWKL--LDLETVKIP---FRND------SRD-NNVVLLSMGSKD 253 (374)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~L-----~~~kr~LlVlDdv~~~--~~~~~l~~~---~~~~------TR~-~~va~~~~~~~~ 253 (374)
....+.+.. ..+++.+||+|+++.. .....+... .+.. |.. ..+.........
T Consensus 93 ----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 93 ----------IREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp ----------THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred ----------HHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 001111111 1126789999998754 222222111 1222 211 111110011123
Q ss_pred ceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 254 NFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 254 ~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
.+.+.+++.++..+++...+...... --.+....|++.+ +|.|..+..+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~-~g~~r~~~~~l 212 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIA-EGDMRRAINIL 212 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHC-CCCHHHHHHHH
Confidence 68999999999999998876432211 1135567889999 99988654443
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.02 E-value=4e-05 Score=72.05 Aligned_cols=176 Identities=10% Similarity=0.123 Sum_probs=92.5
Q ss_pred cccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|++..++.+.+.+..+ +.|+||||||+.+.+.......+. ...+........+.....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 356999999999999988764 889999999999988654221110 000000000111110000
Q ss_pred cC-----CchhhHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--ccccccC---cCCCC-------CcchhHhhhhc
Q 045120 191 LE-----LSEEAEYRRASRLYERLK----NENKILVILANIWKLL--DLETVKI---PFRND-------SRDNNVVLLSM 249 (374)
Q Consensus 191 ~~-----~~~~~~~~~~~~l~~~L~----~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~-------TR~~~va~~~~ 249 (374)
.. .......+....+.+.+. .+++.+||+||+.... ..+.+.. ..+.. ++...+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00 000000001122233332 1357899999986532 2222211 11222 22222211112
Q ss_pred CCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHh
Q 045120 250 GSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNA 305 (374)
Q Consensus 250 ~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig 305 (374)
.....+.+.+++.++..+++...+......- -.+....|++.+ +|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~-~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAA-EGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHS-SSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHC-CCCHHHHHHHH
Confidence 2235789999999999999987763111111 134566899999 99998876554
No 19
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.85 E-value=4.6e-05 Score=63.94 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=33.5
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~ 159 (374)
...++||+.+++++.+.+... +.|+||||||+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999998754 889999999999988653
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.81 E-value=0.00013 Score=66.85 Aligned_cols=163 Identities=9% Similarity=0.077 Sum_probs=90.5
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFD-RVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|++..++.+.+++..+ +.|+||||+|+.+.+..... .+. ..+.++.+.......+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-------- 86 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVR-------- 86 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTT-CHHHHCEEEETTSTTCTTTSS--------
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCC-cccCCeEEEeCccccChHHHH--------
Confidence 456999999999999988765 78999999999998864211 111 12333333321111000
Q ss_pred cCCchhhHHHHHHHHHHH--HhcCCeEEEEEeCCCCcc--ccccccC---cCCCC------C-cchhHhhhhcCCCCcee
Q 045120 191 LELSEEAEYRRASRLYER--LKNENKILVILANIWKLL--DLETVKI---PFRND------S-RDNNVVLLSMGSKDNFL 256 (374)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~--L~~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~------T-R~~~va~~~~~~~~~~~ 256 (374)
+........ +..+++.++|+|++.... ..+.+.. ..+.. | +...+..........+.
T Consensus 87 ---------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 87 ---------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp ---------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred ---------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 000111100 111368899999987532 2222222 22222 2 22211111112223799
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHH
Q 045120 257 IANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTT 303 (374)
Q Consensus 257 l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ 303 (374)
+.+++.++..+++...+......- -.+....|+..+ +|.|-.+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~-~G~~r~~~~ 202 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYIS-GGDFRKAIN 202 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCCB-CHHHHHHHHHTT-TTCHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHHHH
Confidence 999999999999988764322111 134566888899 888876543
No 21
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.72 E-value=0.00041 Score=63.73 Aligned_cols=52 Identities=10% Similarity=-0.148 Sum_probs=38.5
Q ss_pred CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 253 DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
..+.+.+++.++..+++...+...... --.+....++..| +|.|-.+.-+..
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~-~G~~r~l~~~l~ 212 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRS-RGTMRVAKRLFR 212 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHS-CSCHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHc-cCCHHHHHHHHH
Confidence 478999999999999998877532211 1135667899999 999988866654
No 22
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.63 E-value=0.00021 Score=59.56 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=33.1
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
...++||+.+++.+.+.+... ..|+||||||+.+.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456999999999999998764 78999999999998865
No 23
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00012 Score=72.25 Aligned_cols=174 Identities=10% Similarity=-0.006 Sum_probs=93.7
Q ss_pred cccccccccHHHHHHHHHHhhc--------------------C------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 045120 119 KVYEAFESRVSNLKSTQNALTN--------------------A------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV 172 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~--------------------~------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 172 (374)
.....++|++..++++.++|.. . +.|+||||||+.+.+... + ..+.++.
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 3456799999999999999875 1 889999999999998652 2 2344555
Q ss_pred CCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHH-hcCCeEEEEEeCCCCccc-----cccccCcC---CCC-----
Q 045120 173 SQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERL-KNENKILVILANIWKLLD-----LETVKIPF---RND----- 238 (374)
Q Consensus 173 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L-~~~kr~LlVlDdv~~~~~-----~~~l~~~~---~~~----- 238 (374)
+...+.. +....+........-. .......+.+ ..+++.+|+||++..... +..+...+ ...
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~ 186 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMSVV---GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILIC 186 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCCST---TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEE
T ss_pred CCcchHH-HHHHHHHHHhccccHH---HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEE
Confidence 5444433 2222222111100000 0000000011 123688999999964311 11111110 000
Q ss_pred -C-cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCC--CCCCcchHHHHHHHHHHccCC-chHHHHHHhc
Q 045120 239 -S-RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGD--DVENCKFKSTAINVAKACGAG-LFCTLTTNAS 306 (374)
Q Consensus 239 -T-R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~--~~~~~~l~~~~~~I~~~c~~G-lPLai~~ig~ 306 (374)
+ ....+.. .......+.+++++.++..+++...+.. ...++ +....|++.+ +| ++-++..+..
T Consensus 187 ~~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s-~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 187 NERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTT-RGDIRQVINLLST 254 (516)
T ss_dssp SCTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHT-TTCHHHHHHHHTH
T ss_pred cCCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHc-CCcHHHHHHHHHH
Confidence 1 1111211 1112236899999999999998877641 11222 3356888999 77 6666766543
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.52 E-value=0.0019 Score=57.15 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=84.0
Q ss_pred cccccccHHHHHHHHHHhh---c------------------CCCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 121 YEAFESRVSNLKSTQNALT---N------------------ANGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~---~------------------~~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
...++|.+..++.|.+.+. . ++.|+|||+||+.+++... .. .+.++.+.-.+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHh--
Confidence 4568899888877765542 1 1889999999999998553 21 23344332211
Q ss_pred HHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-----------------ccccccCc---C--CC
Q 045120 180 KIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL-----------------DLETVKIP---F--RN 237 (374)
Q Consensus 180 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~-----------------~~~~l~~~---~--~~ 237 (374)
....... .....+.+........+|+||++.... .+..+... . +.
T Consensus 78 ------------~~~~~~~-~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 ------------VIGGLGA-ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp ------------SSTTHHH-HHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ------------hccChhH-HHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0111111 122223333333257999999997530 01111110 0 11
Q ss_pred C------Ccchh-Hhhhhc---CCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH-HHHHHh
Q 045120 238 D------SRDNN-VVLLSM---GSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC-TLTTNA 305 (374)
Q Consensus 238 ~------TR~~~-va~~~~---~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL-ai~~ig 305 (374)
. |.... +..... --...+.++..+.++-.++|..++...............+++.+ .|.+- .|..+.
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~l~~l~ 222 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELT-PGFSGADIANIC 222 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTC-TTCCHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHC-CCCCHHHHHHHH
Confidence 1 22111 110011 11246778999999999999887752222222222346788888 87754 554443
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.44 E-value=0.0013 Score=63.50 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=87.9
Q ss_pred cccccccccHHHH---HHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHH
Q 045120 119 KVYEAFESRVSNL---KSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDI 185 (374)
Q Consensus 119 ~~~~~~vGr~~~~---~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i 185 (374)
.....++|.+..+ ..+...+..+ ..|+||||||+.+.+... .. |+.++.. .....+ +.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~-----f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--AD-----VERISAVTSGVKEI-REA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CE-----EEEEETTTCCHHHH-HHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CC-----eEEEEeccCCHHHH-HHH
Confidence 3345689999888 6777777654 889999999999998543 11 2333222 122211 111
Q ss_pred HHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cccccccCcCCCC--------Ccchh--HhhhhcCCCC
Q 045120 186 AEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL--LDLETVKIPFRND--------SRDNN--VVLLSMGSKD 253 (374)
Q Consensus 186 ~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~--------TR~~~--va~~~~~~~~ 253 (374)
..........+++.+|+||++... ...+.|...+..+ |.+.. +.........
T Consensus 95 ----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 95 ----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp ----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred ----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCcee
Confidence 111111112236899999999754 2233332222222 22221 1111112233
Q ss_pred ceecCCCCHHHHHHHHHHhcCCC------CCCcchHHHHHHHHHHccCCchHHHHH
Q 045120 254 NFLIANITEEEAWRLFKIMNGDD------VENCKFKSTAINVAKACGAGLFCTLTT 303 (374)
Q Consensus 254 ~~~l~~L~~~~s~~Lf~~~a~~~------~~~~~l~~~~~~I~~~c~~GlPLai~~ 303 (374)
++.+.+++.++-..++.+.+... ....--.+....|++.+ +|.+-.+.-
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~-~Gd~R~lln 213 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELV-NGDARRALN 213 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHH-CSCHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHC-CCCHHHHHH
Confidence 78899999999999998876421 11111235566788888 887765543
No 26
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.19 E-value=0.0018 Score=60.54 Aligned_cols=48 Identities=4% Similarity=-0.018 Sum_probs=33.1
Q ss_pred ceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccC-CchHHHHH
Q 045120 254 NFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGA-GLFCTLTT 303 (374)
Q Consensus 254 ~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~-GlPLai~~ 303 (374)
.+.+++++.++..+++...+...... --.+....|++.+ . |.|-.+..
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~~~~~-~~~~~l~~l~~~~-~~G~~r~~~~ 301 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEEEDVE-MSEDAYTVLTRIG-LETSLRYAIQ 301 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHH-HHSCHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHh-cCCCHHHHHH
Confidence 47999999999999999876421111 1135567888888 6 77765543
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.17 E-value=0.0017 Score=58.42 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=87.7
Q ss_pred cccccccccHHHHHHHHHHhhc--------------C--------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTN--------------A--------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~--------------~--------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
.....++|.+..+++|.+.+.. . ++|+|||+||+.+++.... ..+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHH
Confidence 3456799999999999887732 1 8899999999999985431 12233322111
Q ss_pred CHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc----------------cccccccCc-----C
Q 045120 177 DIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL----------------LDLETVKIP-----F 235 (374)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~----------------~~~~~l~~~-----~ 235 (374)
...... .......+.......+..+|+||++... ..+..+... .
T Consensus 89 --------------~~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 --------------KKFIGE-GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp --------------CCSTTH-HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred --------------Hhccch-HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 111111 1222333333443336789999999642 011111110 1
Q ss_pred CCC------Ccchh-Hhhhhc---CCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC-chHHHHHH
Q 045120 236 RND------SRDNN-VVLLSM---GSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG-LFCTLTTN 304 (374)
Q Consensus 236 ~~~------TR~~~-va~~~~---~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G-lPLai~~i 304 (374)
..+ |.... +..... .-...+.+++.+.++..++|...+......... -...++..+ .| .|-.|..+
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~-~g~~~~~i~~l 230 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMT-EGCVGAELKAI 230 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHC-TTCCHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHc-CCCCHHHHHHH
Confidence 111 32221 110011 112368999999999999999887633221111 124677777 66 55455444
Q ss_pred h
Q 045120 305 A 305 (374)
Q Consensus 305 g 305 (374)
.
T Consensus 231 ~ 231 (285)
T 3h4m_A 231 C 231 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.14 E-value=0.0012 Score=61.27 Aligned_cols=177 Identities=11% Similarity=0.104 Sum_probs=90.1
Q ss_pred ccccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFD-RVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
....++|++..++.+..++..+ +.|+||||||+.+.+.......+. ....++.+.......+ .+.+..+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 113 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNF 113 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHH
Confidence 3456899999999999998765 789999999999988643111111 2233443333233222 2211111
Q ss_pred CcC-CchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ccccccC---cCCCC-------CcchhHhhhhcCCCCcee
Q 045120 190 GLE-LSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVKI---PFRND-------SRDNNVVLLSMGSKDNFL 256 (374)
Q Consensus 190 ~~~-~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~~---~~~~~-------TR~~~va~~~~~~~~~~~ 256 (374)
... ....... ........+.-+|++|++.... ....+.. ..+.. +....+..........+.
T Consensus 114 ~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 114 ARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 100 0000000 0000111245688888875431 1111111 11111 111111100001113688
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHH
Q 045120 257 IANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 257 l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
+.+++.++....+...+...... --.+....|++.+ +|.|-.+..+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~-~G~~r~~~~~ 234 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVK-CDDGVLERILDIS-AGDLRRGITL 234 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHT-SSCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHc-CCCHHHHHHH
Confidence 99999999999998876422111 1135667899999 9998865443
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.011 Score=55.98 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=84.7
Q ss_pred cccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
.....+.|.+..+++|.+.+.-+ ++|+|||.||+++.+..... | +.|+.+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--F---IRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--E---EEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--c---eEEEhHHhh
Confidence 33456889999888887765432 89999999999999965422 2 333332211
Q ss_pred CHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----------------cccccC---cCCC
Q 045120 177 DIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD----------------LETVKI---PFRN 237 (374)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~---~~~~ 237 (374)
..+... .+.....+++.-+....++|.+|++..... +..+.. .+..
T Consensus 220 --------------sk~vGe-se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 220 --------------QKYIGE-GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp --------------CSSTTH-HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred --------------ccccch-HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 111111 223334444444444789999999874310 011110 1111
Q ss_pred C--------CcchhH---hhhhc-CCCCceecCCCCHHHHHHHHHHhcCCCCCC--cchHHHHHHHHHHccCCc
Q 045120 238 D--------SRDNNV---VLLSM-GSKDNFLIANITEEEAWRLFKIMNGDDVEN--CKFKSTAINVAKACGAGL 297 (374)
Q Consensus 238 ~--------TR~~~v---a~~~~-~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~--~~l~~~~~~I~~~c~~Gl 297 (374)
. |..... |-... --...+.++.-+.++-.++|+.+....... -++ ..|++.+ .|+
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t-~G~ 353 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKM-NGC 353 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHC-CSC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHC-CCC
Confidence 1 211111 11111 123478888889999999998887533222 233 3667777 664
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.99 E-value=0.014 Score=54.56 Aligned_cols=165 Identities=9% Similarity=0.030 Sum_probs=89.6
Q ss_pred ccccccccHHHHHHHHHHhhc--------------C-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 120 VYEAFESRVSNLKSTQNALTN--------------A-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~--------------~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
....++|.+..++.|.+.+.. . +.|+|||+||+.+++... . ..+.++.+.-.+
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~---~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--A---TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--C---EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--C---eEEEEehHHhhc-
Confidence 345689999999999887742 1 889999999999988542 1 233444432211
Q ss_pred HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc-------------cccccccCc-------CCCC
Q 045120 179 KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL-------------LDLETVKIP-------FRND 238 (374)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~-------------~~~~~l~~~-------~~~~ 238 (374)
..... .......+.......+..+|+||++... ..+..+... .+..
T Consensus 156 -------------~~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -------------KWVGE-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------SSTTH-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------cccch-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 11111 1122233333333336789999998421 001111110 0111
Q ss_pred ------Ccc-hhHhhh-hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC-chHHHHHHhc
Q 045120 239 ------SRD-NNVVLL-SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG-LFCTLTTNAS 306 (374)
Q Consensus 239 ------TR~-~~va~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G-lPLai~~ig~ 306 (374)
|.. ..+... .......+.+...+.++..+++...+...... --......|++.+ .| .|-.|..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t-~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQS-DAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHT-TTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 211 111100 01122367888899999999988776422111 1134556888889 77 6667777664
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0037 Score=58.03 Aligned_cols=53 Identities=9% Similarity=-0.033 Sum_probs=35.5
Q ss_pred CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHHhc
Q 045120 253 DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
..+++.+++.++..+.+...+......-.-.+....|++.+ +|.+-.+..+-.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~-~G~~r~a~~~l~ 238 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS-NGNLRVSLLMLE 238 (354)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHH-TTCHHHHHHHHT
T ss_pred eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 57899999999999999887642111100024556888999 888776654443
No 32
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.91 E-value=0.0024 Score=62.08 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=32.6
Q ss_pred ccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
.+++||+.++..++..|... .+|+|||+||+.+.+..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 46999999999999998654 88999999999998864
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.89 E-value=0.011 Score=54.55 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=33.8
Q ss_pred CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHH
Q 045120 253 DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLT 302 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~ 302 (374)
..+.+.+++.++...++.+.+..... .--.+....|+..+ +|.|-.+.
T Consensus 177 ~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~-~G~~r~l~ 224 (338)
T 3pfi_A 177 MQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRS-RSTPRIAL 224 (338)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTT-TTCHHHHH
T ss_pred EEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH-CcCHHHHH
Confidence 47999999999999999887742211 11135566788889 99884443
No 34
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.88 E-value=0.025 Score=52.22 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=51.2
Q ss_pred CeEEEEEeCCCCcc--c----cccccCcCCCC-----C-cchhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCc
Q 045120 213 NKILVILANIWKLL--D----LETVKIPFRND-----S-RDNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENC 280 (374)
Q Consensus 213 kr~LlVlDdv~~~~--~----~~~l~~~~~~~-----T-R~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~ 280 (374)
++-++|+|++..-. . +..+..+-+.. | +...+..........+.+.+++.++..+.+..... . +
T Consensus 108 ~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--~-~- 183 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT--M-S- 183 (334)
T ss_dssp SCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC--C-C-
T ss_pred CcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC--C-C-
Confidence 57788899987532 1 22222222221 2 22222211222234799999999999999888751 1 1
Q ss_pred chHHHHHHHHHHccCCchHHHHHHhc
Q 045120 281 KFKSTAINVAKACGAGLFCTLTTNAS 306 (374)
Q Consensus 281 ~l~~~~~~I~~~c~~GlPLai~~ig~ 306 (374)
.+....++..+ +|.|..+..+..
T Consensus 184 --~~~~~~l~~~s-~G~~r~a~~~l~ 206 (334)
T 1a5t_A 184 --QDALLAALRLS-AGSPGAALALFQ 206 (334)
T ss_dssp --HHHHHHHHHHT-TTCHHHHHHTTS
T ss_pred --HHHHHHHHHHc-CCCHHHHHHHhc
Confidence 24456788999 999987755543
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.78 E-value=0.0049 Score=56.74 Aligned_cols=167 Identities=11% Similarity=0.116 Sum_probs=89.2
Q ss_pred cccccccccHHHHHHHHHHhhc-------------C--------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTN-------------A--------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~-------------~--------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
.....++|.+..++.|.+.+.. . +.|+|||+||+.+++... .. ..+.++.+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh
Confidence 3456788999888888776631 1 889999999999998541 11 123333332111
Q ss_pred HHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc-------------cccccC---cC---CCC
Q 045120 178 IKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD-------------LETVKI---PF---RND 238 (374)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~---~~---~~~ 238 (374)
...... ......+.+.....+..+|+||++..... ...+.. .+ +.+
T Consensus 85 --------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 111111 12233344444333689999999975310 011100 00 111
Q ss_pred ------Ccch-hHhh-hhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCc-hHHHHHHhc
Q 045120 239 ------SRDN-NVVL-LSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGL-FCTLTTNAS 306 (374)
Q Consensus 239 ------TR~~-~va~-~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~Gl-PLai~~ig~ 306 (374)
|... .+-. ....-...+.++..+.++-.++|..+.......-. ......|++.+ .|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t-~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKT-DGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTC-TTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 2111 1100 00122246788889999999999988753321111 23456788888 776 545655544
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.76 E-value=0.0049 Score=56.54 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=33.8
Q ss_pred cccccccccHHHHHHHHHHhhcC----------CCCccHHHHHHHHHHHh
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------~gGiGKTtLA~~v~~~~ 158 (374)
.....++|.+..++.+.+++..+ +.|+|||++|+.+.+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 33567999999999999999865 57999999999998854
No 37
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.76 E-value=0.021 Score=55.04 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=87.5
Q ss_pred ccccccccccHHHHHHHHHHhh-------------cC--------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 118 NKVYEAFESRVSNLKSTQNALT-------------NA--------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~-------------~~--------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
+.....++|.+..++.|.+.+. .. +.|+|||+||+.+++... ..-++.++..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~~~- 202 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSISSS- 202 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEECCC-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEeHH-
Confidence 3445679999999999888762 11 889999999999998541 1123333322
Q ss_pred CHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------------ccccccCcC------CC
Q 045120 177 DIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL-------------DLETVKIPF------RN 237 (374)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~-------------~~~~l~~~~------~~ 237 (374)
+ +... ..+.. .. ....+.......+..+|+||++.... ....+...+ +.
T Consensus 203 ~---l~~~---~~g~~--~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 203 D---LVSK---WLGES--EK----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------C--CC----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred H---HHhh---hcchH--HH----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 1 1110 11111 01 12233333333367999999997531 011111111 11
Q ss_pred C------Ccch-hHhhh-hcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC-chHHHHHHhc
Q 045120 238 D------SRDN-NVVLL-SMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG-LFCTLTTNAS 306 (374)
Q Consensus 238 ~------TR~~-~va~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G-lPLai~~ig~ 306 (374)
+ |... .+... ..-....+.++..+.++-..+|..++........ ......|++.+ .| .+-.|..+..
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t-~G~sgadl~~l~~ 346 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKT-DGYSGADISIIVR 346 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHT-TTCCHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 1 2211 11100 0112246778888899999999888753321111 23445788888 77 4545555443
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.69 E-value=0.006 Score=63.84 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=33.3
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
..+++||+.++.++++.|... .+|+||||||+.+.+..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 356999999999999998764 88999999999999865
No 39
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.69 E-value=0.0052 Score=51.20 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=37.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
+.|+||||||+.+++.......+. ++++ +..++...+...+...... .+.+.+. +.-+|||||
T Consensus 46 ~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~llilDE 108 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDT--------KFLKTVL--NSPVLVLDD 108 (180)
T ss_dssp SSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCS--------HHHHHHH--TCSEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHH--------HHHHHhc--CCCEEEEeC
Confidence 779999999999998764232222 2333 3444555544443221111 2222333 357999999
Q ss_pred CCC
Q 045120 222 IWK 224 (374)
Q Consensus 222 v~~ 224 (374)
+..
T Consensus 109 ~~~ 111 (180)
T 3ec2_A 109 LGS 111 (180)
T ss_dssp CSS
T ss_pred CCC
Confidence 873
No 40
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.63 E-value=0.0083 Score=54.22 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=87.7
Q ss_pred cccccccccHHHHHHHHHHhhc--------------C-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTN--------------A-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~--------------~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
.....++|.+..++.+.+.+.. . +.|+||||||+.+.+... . ..+.++.+.-.+
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~---~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--A---TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--C---EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--C---CeEEeeHHHHhh
Confidence 3356799999999998887632 1 889999999999998543 1 123333332111
Q ss_pred HHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc-------------ccccc---CcCC-----
Q 045120 178 IKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD-------------LETVK---IPFR----- 236 (374)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~---~~~~----- 236 (374)
..... .......+.......+..+|+||++..... ...+. ..++
T Consensus 93 --------------~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------KYVGD-GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------SSCSC-HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------cccch-HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 11111 122222333333333678999999964310 00010 0011
Q ss_pred CC------Ccch-hHh---hhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchH-HHHHHh
Q 045120 237 ND------SRDN-NVV---LLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFC-TLTTNA 305 (374)
Q Consensus 237 ~~------TR~~-~va---~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPL-ai~~ig 305 (374)
.. |... .+. ...+ ...+.++..+.++...++...+......- -......|++.+ .|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~la~~~-~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPL-DTEALRRLAKIT-DGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCS-CHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 11 2211 110 1111 23577778888888888887764221111 124456888899 88775 565554
Q ss_pred c
Q 045120 306 S 306 (374)
Q Consensus 306 ~ 306 (374)
.
T Consensus 234 ~ 234 (297)
T 3b9p_A 234 K 234 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.025 Score=52.19 Aligned_cols=167 Identities=10% Similarity=0.101 Sum_probs=83.5
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcCCCC-eEEEEEeCCCCCHHHHHHHHHHHhC
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDKLFD-RVVFSEVSQTSDIKKIQGDIAEKLG 190 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 190 (374)
...++|.+..++.|...+..+ +.|+||||+|+.+.+..... .+. .+.-++.+.......+. +++..+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-~~i~~~~ 101 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-NQIKDFA 101 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH-HHHHHHH
Confidence 455889998899888888765 78999999999998864311 111 12223333222222221 1111110
Q ss_pred cCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--cccccc---CcCCCC------C-cchhHhhhhcCCCCceecC
Q 045120 191 LELSEEAEYRRASRLYERLKNENKILVILANIWKLL--DLETVK---IPFRND------S-RDNNVVLLSMGSKDNFLIA 258 (374)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~~l~---~~~~~~------T-R~~~va~~~~~~~~~~~l~ 258 (374)
.... .+.. .+-++|+|++.... ..+.+. ...+.. | ....+..........+.+.
T Consensus 102 ~~~~-------------~~~~-~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 102 STRQ-------------IFSK-GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HBCC-------------SSSC-SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hhcc-------------cCCC-CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 0000 0011 35677788775321 111111 001111 0 0001100011112367899
Q ss_pred CCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHH-HHHHh
Q 045120 259 NITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCT-LTTNA 305 (374)
Q Consensus 259 ~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLa-i~~ig 305 (374)
+++.++..+.+...+......- -......|++.+ +|-+-- +..+-
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s-~G~~r~~~~~l~ 213 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKL-SPNAEKALIELS-NGDMRRVLNVLQ 213 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHH-TTCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 9999998888887663211111 134566888999 887764 44443
No 42
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.57 E-value=0.0048 Score=63.70 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=33.2
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
..+++||+.+++++...|... .+|+|||++|+.+.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 346999999999999999654 88999999999998864
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.55 E-value=0.0091 Score=54.86 Aligned_cols=166 Identities=12% Similarity=0.090 Sum_probs=91.0
Q ss_pred cccccccccccHHHHHHHHHHhhc----------C-----------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 117 SNKVYEAFESRVSNLKSTQNALTN----------A-----------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 117 ~~~~~~~~vGr~~~~~~i~~~L~~----------~-----------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
+......++|.+..++.|.+.+.. . +.|+|||+||+.+++... .. .+.++.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~---~~~v~~--- 84 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSS--- 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CE---EEEEEH---
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CC---EEEEch---
Confidence 334456799999999999887721 0 889999999999998643 21 222321
Q ss_pred CCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc-------------cccccCc------CC
Q 045120 176 SDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD-------------LETVKIP------FR 236 (374)
Q Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~------~~ 236 (374)
..+. . .... ........+.+.....+..+|+||++..... ...+... ..
T Consensus 85 ---~~l~----~----~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 85 ---SDLV----S----KWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---HHHH----T----TTGG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---HHHh----h----cccc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 1111 1 1111 1223334444444443678999999974311 1111100 11
Q ss_pred CC------Ccch-hHh---hhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC-chHHHHHHh
Q 045120 237 ND------SRDN-NVV---LLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG-LFCTLTTNA 305 (374)
Q Consensus 237 ~~------TR~~-~va---~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G-lPLai~~ig 305 (374)
.+ |... .+- ... -...+.++..+.++-.++|..++......-. ......|++.+ .| .+-.|..+.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t-~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMT-EGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTT-TTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHc-CCCCHHHHHHHH
Confidence 11 2211 110 111 2236778889999999999998864321111 23445788888 66 455555544
Q ss_pred c
Q 045120 306 S 306 (374)
Q Consensus 306 ~ 306 (374)
.
T Consensus 229 ~ 229 (322)
T 3eie_A 229 K 229 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.01 Score=56.76 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=52.1
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
...+.|.+..+++|.+.+.-+ ++|+|||+||+++++..... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 456789998888887765431 89999999999999965422 23344332211
Q ss_pred HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045120 179 KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWK 224 (374)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 224 (374)
.+...+ ......++...+....++|.+|++..
T Consensus 254 -------------k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 254 -------------KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp -------------SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred -------------ccchHH-HHHHHHHHHHHHhcCCceeeeecccc
Confidence 111111 22334444444444789999999974
No 45
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.50 E-value=0.0081 Score=54.56 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=29.2
Q ss_pred cccccHHHHHHHHHHhh---------------cC---------CCCccHHHHHHHHHHHhhh
Q 045120 123 AFESRVSNLKSTQNALT---------------NA---------NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~---------------~~---------~gGiGKTtLA~~v~~~~~~ 160 (374)
.++|.+..++.|.+.+. .. +.|+|||+||+.+.+....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 48899988888776543 11 8899999999998886543
No 46
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.47 E-value=0.051 Score=51.18 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=87.8
Q ss_pred cccccccccHHHHHHHHHHhhc--------------C-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTN--------------A-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~--------------~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
.....++|.+..++.|.+.+.. . ..|+|||+||+.+.+... . ..+.++.+.-.+
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHHhhc
Confidence 3456799999999999888721 1 889999999999987532 1 223333322111
Q ss_pred HHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------------ccccccC-------cCCC
Q 045120 178 IKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL-------------DLETVKI-------PFRN 237 (374)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~-------------~~~~l~~-------~~~~ 237 (374)
. ..... ......+.+.....+..+|+||++.... ....+.. ..+.
T Consensus 187 --~------------~~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 --K------------YVGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp -------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --c------------ccchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 00001 1122333333333256899999995330 0011100 0011
Q ss_pred C------C-cchhHhhhhc-CCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCc-hHHHHHHhc
Q 045120 238 D------S-RDNNVVLLSM-GSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGL-FCTLTTNAS 306 (374)
Q Consensus 238 ~------T-R~~~va~~~~-~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~Gl-PLai~~ig~ 306 (374)
. | +...+..... -....+.+...+.++-.+++...+......- .......|++.+ .|. +-+|..+..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~~~~la~~~-~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL-TQKELAQLARMT-DGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHT-TTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 1 1 1111110011 1223678889999999999998875322111 123556888888 774 446666654
No 47
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.01 Score=56.84 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=52.0
Q ss_pred ccccccccccHHHHHHHHHHhhc----C------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 118 NKVYEAFESRVSNLKSTQNALTN----A------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~~----~------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
......+.|.+..+++|.+.+.. + ++|+|||.||+++++..... .+.++.+.-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 34456788999999888776432 2 89999999999999965421 233332221
Q ss_pred CCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045120 176 SDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
...+... .......++..-+....++|.+|++.
T Consensus 252 --------------~~~~vGe-se~~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 252 --------------VQMYIGE-GAKLVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp --------------CSSCSSH-HHHHHHHHHHHHHHHCSEEEEEECTH
T ss_pred --------------hhcccch-HHHHHHHHHHHHHhcCCeEEeecchh
Confidence 1111111 12233344443333368999999985
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.43 E-value=0.067 Score=51.37 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
+.|+||||||+.+++.......--.+++++.+ .+...+...+.... ...+.+.+.. +.-+|+|||
T Consensus 138 p~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~vL~IDE 202 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK--------LNEFREKYRK-KVDILLIDD 202 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC--------HHHHHHHHTT-TCSEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc--------HHHHHHHhcC-CCCEEEEeC
Confidence 78999999999999865422101123455432 33344444332110 1223344442 467999999
Q ss_pred CCCccc----cccccCc----CCCC------Cc---------chhHhhhhcCCCCceecCCCCHHHHHHHHHHhcC--CC
Q 045120 222 IWKLLD----LETVKIP----FRND------SR---------DNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNG--DD 276 (374)
Q Consensus 222 v~~~~~----~~~l~~~----~~~~------TR---------~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~--~~ 276 (374)
+..... .+.+... ...+ |. ...+. ..+....++.+++++.++-.+++.+.+. +.
T Consensus 203 i~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~-sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~ 281 (440)
T 2z4s_A 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV-SRFQMGLVAKLEPPDEETRKSIARKMLEIEHG 281 (440)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH-HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC
T ss_pred cccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH-hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 864321 1111111 1111 11 12222 2233335789999999999999988774 11
Q ss_pred CCCcchHHHHHHHHHHccCCchHHH
Q 045120 277 VENCKFKSTAINVAKACGAGLFCTL 301 (374)
Q Consensus 277 ~~~~~l~~~~~~I~~~c~~GlPLai 301 (374)
..++ ++...|+..+ +|.+-.+
T Consensus 282 ~i~~---e~l~~la~~~-~gn~R~l 302 (440)
T 2z4s_A 282 ELPE---EVLNFVAENV-DDNLRRL 302 (440)
T ss_dssp CCCT---THHHHHHHHC-CSCHHHH
T ss_pred CCCH---HHHHHHHHhc-CCCHHHH
Confidence 1222 3456788888 8877544
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.015 Score=50.20 Aligned_cols=50 Identities=8% Similarity=-0.060 Sum_probs=35.4
Q ss_pred CceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHHHH
Q 045120 253 DNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLTTN 304 (374)
Q Consensus 253 ~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~~i 304 (374)
..+.+.+++.++..+++...+...... --.+....|++.| +|.+-.+.-+
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~-~g~~r~l~~~ 216 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRM-ARDLRTLFDV 216 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHT-TTCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc-cCCHHHHHHH
Confidence 478999999999999999876421111 1135667888999 8888766543
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.36 E-value=0.015 Score=59.95 Aligned_cols=137 Identities=15% Similarity=0.272 Sum_probs=76.0
Q ss_pred cccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhcC----CCCeEEEE-EeCCCCCHHHHHHHHH
Q 045120 121 YEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQAREDK----LFDRVVFS-EVSQTSDIKKIQGDIA 186 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv-~vs~~~~~~~~~~~i~ 186 (374)
..+++||+.++.++++.|... ..|+||||||+.+.+...... .+++.+|. +.+.-.
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~---------- 254 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL---------- 254 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh----------
Confidence 346899999999999998754 889999999999988643211 12333332 111100
Q ss_pred HHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc----------cc-cccccCcCCCC-------CcchhHh---
Q 045120 187 EKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL----------LD-LETVKIPFRND-------SRDNNVV--- 245 (374)
Q Consensus 187 ~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~----------~~-~~~l~~~~~~~-------TR~~~va--- 245 (374)
.+... ..........+.+.+...+..+|++|++... .+ ...+...+..+ |......
T Consensus 255 --~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~ 331 (758)
T 1r6b_X 255 --AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF 331 (758)
T ss_dssp --CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCC
T ss_pred --ccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhh
Confidence 00111 1122223334444444335799999999743 11 11233333332 2221110
Q ss_pred ------hhhcCCCCceecCCCCHHHHHHHHHHhc
Q 045120 246 ------LLSMGSKDNFLIANITEEEAWRLFKIMN 273 (374)
Q Consensus 246 ------~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 273 (374)
...+ ..+.+++.+.++..+++....
T Consensus 332 ~~d~aL~~Rf---~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 332 EKDRALARRF---QKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCTTSSGGGE---EEEECCCCCHHHHHHHHHHHH
T ss_pred hcCHHHHhCc---eEEEcCCCCHHHHHHHHHHHH
Confidence 0111 258899999999988887654
No 51
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.30 E-value=0.0033 Score=53.38 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
.+|+||||||+.+++.... ....++|++.+ .+...+...+... .. ..+.+.+.. .-+|||||
T Consensus 62 ~~GtGKT~la~~i~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~----~~----~~~~~~~~~--~~~lilDe 123 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAK--RNVSSLIVYVP------ELFRELKHSLQDQ----TM----NEKLDYIKK--VPVLMLDD 123 (202)
T ss_dssp STTSSHHHHHHHHHHHHHT--TTCCEEEEEHH------HHHHHHHHC---C----CC----HHHHHHHHH--SSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCeEEEEEhH------HHHHHHHHHhccc----hH----HHHHHHhcC--CCEEEEcC
Confidence 8899999999999986652 23345666543 4444443332211 11 122333443 24999999
Q ss_pred CCC
Q 045120 222 IWK 224 (374)
Q Consensus 222 v~~ 224 (374)
++.
T Consensus 124 i~~ 126 (202)
T 2w58_A 124 LGA 126 (202)
T ss_dssp ECC
T ss_pred CCC
Confidence 964
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.015 Score=55.91 Aligned_cols=154 Identities=15% Similarity=0.181 Sum_probs=83.6
Q ss_pred cccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
.....+.|.+..+++|.+.+.-+ ++|+|||+||+++.+.... .| +.++.+.-
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--~f---i~vs~s~L- 279 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--TF---IRVIGSEL- 279 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--EE---EEEEGGGG-
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--Ce---EEEEhHHh-
Confidence 33456889999888887765321 8899999999999996542 12 33332211
Q ss_pred CHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc----------------cccccC---cCCC
Q 045120 177 DIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD----------------LETVKI---PFRN 237 (374)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~----------------~~~l~~---~~~~ 237 (374)
....... .+.....++...+....++|++|++..... +..+.. .+..
T Consensus 280 -------------~sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 280 -------------VQKYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp -------------CCCSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred -------------hcccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 1111111 122334444444444789999999874310 000100 0111
Q ss_pred C--------CcchhH---hhhhcC-CCCceecCCCCHHHHHHHHHHhcCCCCC--CcchHHHHHHHHHHccCCc
Q 045120 238 D--------SRDNNV---VLLSMG-SKDNFLIANITEEEAWRLFKIMNGDDVE--NCKFKSTAINVAKACGAGL 297 (374)
Q Consensus 238 ~--------TR~~~v---a~~~~~-~~~~~~l~~L~~~~s~~Lf~~~a~~~~~--~~~l~~~~~~I~~~c~~Gl 297 (374)
. |..... |....| -...+.++.-+.++-.++|+.+...... .-++ ..|++.| .|+
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T-~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLC-PNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHC-CSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHC-CCC
Confidence 1 222111 111111 2347888888889999999888753222 2233 3567777 665
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.26 E-value=0.0086 Score=54.49 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=31.4
Q ss_pred cccccccccHHHHHHHHHHhhc--------------C--------CCCccHHHHHHHHHHHh
Q 045120 119 KVYEAFESRVSNLKSTQNALTN--------------A--------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~--------------~--------~gGiGKTtLA~~v~~~~ 158 (374)
.....++|.+..+++|.+.+.. . +.|+||||||+.+++..
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3345689999988888776642 1 88999999999999854
No 54
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.02 Score=54.64 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=51.6
Q ss_pred ccccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 120 VYEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
....+.|.+..+++|.+.+.-. ++|+|||+||+++++.... + .+.|+.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~--~---~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA--A---FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC--E---EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C---eEEEecchhhc
Confidence 3456889999988887765421 8999999999999996542 1 23343332211
Q ss_pred HHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045120 178 IKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIW 223 (374)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~ 223 (374)
.....+ ......++...+....++|.+|++.
T Consensus 245 --------------~~~Ge~-e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 245 --------------KYLGEG-PRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp --------------SSCSHH-HHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred --------------cccchh-HHHHHHHHHHHHHcCCCeeechhhh
Confidence 111111 2233444444443368999999985
No 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.20 E-value=0.013 Score=54.77 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=88.2
Q ss_pred ccccccccHHHHHHHHHHhhc----------------C-----CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 120 VYEAFESRVSNLKSTQNALTN----------------A-----NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~----------------~-----~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
....++|.+..++.|.+.+.. + +.|+|||+||+.+++... .. .+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CE---EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CC---EEEeeHH-----
Confidence 345689999999998887631 1 889999999999998653 11 2223221
Q ss_pred HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCccc-------------cccccCc---C---CCC-
Q 045120 179 KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLLD-------------LETVKIP---F---RND- 238 (374)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~---~~~- 238 (374)
.+. .. ..... ......+.......+..+|+||++..... ...+... + +.+
T Consensus 119 -~l~----~~----~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DLV----SK----WMGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HHH----SC----C---C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HHh----hh----hcchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 111 11 11111 12233333433333689999999874310 1111110 0 111
Q ss_pred -----Ccch-hHhh-hhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC-chHHHHHHhc
Q 045120 239 -----SRDN-NVVL-LSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG-LFCTLTTNAS 306 (374)
Q Consensus 239 -----TR~~-~va~-~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G-lPLai~~ig~ 306 (374)
|... .+.. ........+.++..+.++-.++|..+.......-. ......|++.+ .| .|-.|..+..
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t-~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMT-EGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHT-TTCCHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 2111 1100 00122346788899999999999988763321111 23446788888 77 4545555443
No 56
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.018 Score=54.80 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=52.4
Q ss_pred cccccccccHHHHHHHHHHhhc----C------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC
Q 045120 119 KVYEAFESRVSNLKSTQNALTN----A------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS 176 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~----~------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 176 (374)
.....+.|.++.+++|.+.+.- + ++|+|||.||+++.+..... | +.++.+.-
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~l- 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSEL- 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGGG-
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHHh-
Confidence 3445688999888888776532 1 89999999999999965522 2 23332211
Q ss_pred CHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045120 177 DIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWK 224 (374)
Q Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 224 (374)
...+... .+.....++...+....++|.+|++..
T Consensus 253 -------------~sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 253 -------------IQKYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp -------------CCSSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred -------------hhccCch-HHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 1111111 223344455544444789999999863
No 57
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.85 E-value=0.0045 Score=56.71 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV--SQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
++|+||||||.++.... -..++|+++ ....+. ...+.+.....+.+.+.. .+ +||+
T Consensus 131 pPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~-~~-LLVI 188 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ-HR-VIVI 188 (331)
T ss_dssp SCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH-CS-EEEE
T ss_pred CCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh-CC-EEEE
Confidence 89999999999998751 113456766 222111 002344555667777776 45 9999
Q ss_pred eCCCCc
Q 045120 220 ANIWKL 225 (374)
Q Consensus 220 Ddv~~~ 225 (374)
|++...
T Consensus 189 DsI~aL 194 (331)
T 2vhj_A 189 DSLKNV 194 (331)
T ss_dssp ECCTTT
T ss_pred eccccc
Confidence 998653
No 58
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.82 E-value=0.031 Score=49.71 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=28.7
Q ss_pred CceecCCCCH-HHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCC------chHHHHHHhc
Q 045120 253 DNFLIANITE-EEAWRLFKIMNGDDVENCKFKSTAINVAKACGAG------LFCTLTTNAS 306 (374)
Q Consensus 253 ~~~~l~~L~~-~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~G------lPLai~~ig~ 306 (374)
..+.+++++. ++-..++..... . + .+....|++.+ .| ++-++.++-.
T Consensus 191 ~~i~~p~l~~r~~i~~i~~~~~~--~-~---~~~~~~l~~~~-~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 191 TTIHVPNIATGEQLLEALELLGN--F-K---DKERTTIAQQV-KGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEEECCCEEEHHHHHHHHHHHTC--S-C---HHHHHHHHHHH-TTSEEEECHHHHHHHHHH
T ss_pred eEEcCCCccHHHHHHHHHHhcCC--C-C---HHHHHHHHHHh-cCCCccccHHHHHHHHHH
Confidence 4688899988 666666655321 1 1 24456788888 66 5555555544
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.81 E-value=0.032 Score=49.21 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=29.0
Q ss_pred ccccccccHHHHHHHHHHh---hc-----------C-------CCCccHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNAL---TN-----------A-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L---~~-----------~-------~gGiGKTtLA~~v~~~~ 158 (374)
....++|.+..++++.+.+ .. + ..|+||||||+.+.+..
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3566889988877665543 21 1 88999999999999864
No 60
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.71 E-value=0.08 Score=45.81 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=49.3
Q ss_pred CCCccHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc----------hhhHH---HHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDK----LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS----------EEAEY---RRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~~---~~~~~ 204 (374)
..|+|||||+..+........ .-..++|++....++...+. .+++.++.... ..+.. .....
T Consensus 32 ~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQ 110 (243)
T ss_dssp CTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHH
Confidence 789999999999987532211 12468888877655554443 34445543210 11112 23344
Q ss_pred HHHHHhcCCeEEEEEeCCCCc
Q 045120 205 LYERLKNENKILVILANIWKL 225 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~~~ 225 (374)
+.+.+...+.-+||||.+...
T Consensus 111 ~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 111 ASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHhcCCceEEEEeCchHH
Confidence 556665446789999998643
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.71 E-value=0.029 Score=54.66 Aligned_cols=161 Identities=13% Similarity=0.146 Sum_probs=84.8
Q ss_pred cccccccHHHHHHHHHHhhc-------------C---------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 121 YEAFESRVSNLKSTQNALTN-------------A---------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~-------------~---------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
...++|.+..+++|.+++.. . ..|+|||+||+.+.+... . ..+.++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~---~fv~vn~------ 271 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLING------ 271 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S---EEEEEEH------
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C---CEEEEEc------
Confidence 34689999999998887642 1 889999999999988542 1 1233331
Q ss_pred HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc--------c-----cccccc---CcC--CCC--
Q 045120 179 KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL--------L-----DLETVK---IPF--RND-- 238 (374)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~--------~-----~~~~l~---~~~--~~~-- 238 (374)
..+ . ........... ..+.+....++..+|+||++... . ....|. ..+ +..
T Consensus 272 ~~l----~----~~~~g~~~~~~-~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 272 PEI----M----SKLAGESESNL-RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp HHH----H----TSCTTHHHHHH-HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred hHh----h----hhhcchhHHHH-HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111 1 11111112222 22233333336789999998311 0 011111 111 111
Q ss_pred ----Ccch-hHhhh--hc-CCCCceecCCCCHHHHHHHHHHhcCCCCC--CcchHHHHHHHHHHccCC-chHHHHHHhc
Q 045120 239 ----SRDN-NVVLL--SM-GSKDNFLIANITEEEAWRLFKIMNGDDVE--NCKFKSTAINVAKACGAG-LFCTLTTNAS 306 (374)
Q Consensus 239 ----TR~~-~va~~--~~-~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~--~~~l~~~~~~I~~~c~~G-lPLai~~ig~ 306 (374)
|... .+... .. .-...+.+...+.++-.++|..++..... ...+ .+++..+ .| .+-.|..+..
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t-~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANET-HGHVGADLAALCS 416 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTC-TTCCHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHc-cCCcHHHHHHHHH
Confidence 2221 11110 11 11236889999999999999988763221 2223 3566677 55 4655655543
No 62
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.60 E-value=0.056 Score=49.31 Aligned_cols=78 Identities=9% Similarity=0.095 Sum_probs=50.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch------hhHHHH-HHHHHHHH---hc
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE------EAEYRR-ASRLYERL---KN 211 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~-~~~l~~~L---~~ 211 (374)
..|+||||||.++.........=..++||+....++.. .+++++...+. .+.++. .. +.+.| +.
T Consensus 36 ~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~-i~~~l~~i~~ 109 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRID-MVNQLDAIER 109 (333)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHH-HHHHHHTCCT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHH-HHHHHHHhhc
Confidence 88999999998887765422112468899888887754 36777765332 233443 33 33333 44
Q ss_pred CCeEEEEEeCCCCc
Q 045120 212 ENKILVILANIWKL 225 (374)
Q Consensus 212 ~kr~LlVlDdv~~~ 225 (374)
++.-|||+|-|...
T Consensus 110 ~~~~lvVIDSI~aL 123 (333)
T 3io5_A 110 GEKVVVFIDSLGNL 123 (333)
T ss_dssp TCCEEEEEECSTTC
T ss_pred cCceEEEEeccccc
Confidence 47889999998644
No 63
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.56 E-value=0.054 Score=48.49 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=26.9
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~ 159 (374)
...+.|.++.+++|.+.+..+ +.|+||||||+.+.+...
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 445778777777776644211 889999999999998543
No 64
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.53 E-value=0.0043 Score=49.75 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=26.4
Q ss_pred cccccHHHHHHHHHHhhc----C-------CCCccHHHHHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTN----A-------NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~----~-------~gGiGKTtLA~~v~~~ 157 (374)
.++|++..++++.+.+.. + ..|+|||++|+.+.+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 578999888888887653 1 8899999999999873
No 65
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.42 E-value=0.086 Score=48.81 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCCccHHHHHHHHHHHhhhcC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc-------------hhhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDK----LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS-------------EEAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~ 204 (374)
..|+||||||.++........ .-..++|++....++...+.. ++..++.... .....+....
T Consensus 130 ~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~ 208 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSEHQMELLDY 208 (343)
T ss_dssp CTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHHHHHHHHHH
Confidence 789999999999887643211 124688999888777766553 4455543321 1122234445
Q ss_pred HHHHHhc--CCeEEEEEeCCCC
Q 045120 205 LYERLKN--ENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~--~kr~LlVlDdv~~ 224 (374)
+.+.+.. .+--+||+|.+..
T Consensus 209 l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 209 VAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHhcCCCccEEEEechHH
Confidence 5566654 4677999998753
No 66
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.42 E-value=0.077 Score=48.65 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=52.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc----------hhhHH---HHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKL----FDRVVFSEVSQTSDIKKIQGDIAEKLGLELS----------EEAEY---RRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~~~---~~~~~ 204 (374)
..|+||||||.++......... -..++|++....++...+.+ +++.++.... ..+.+ +....
T Consensus 115 ~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~ 193 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193 (324)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHH
Confidence 8899999999998875432210 24689999888877776653 4555554321 01112 34556
Q ss_pred HHHHHhc-CCeEEEEEeCCCC
Q 045120 205 LYERLKN-ENKILVILANIWK 224 (374)
Q Consensus 205 l~~~L~~-~kr~LlVlDdv~~ 224 (374)
+...+.. .+--+||+|.+..
T Consensus 194 l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 194 LQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHhccCCCEEEEeCcHH
Confidence 6666654 4678999998853
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.35 E-value=0.062 Score=52.05 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=29.1
Q ss_pred cccccccHHHHHHHHHHh---hcC------------------CCCccHHHHHHHHHHHhh
Q 045120 121 YEAFESRVSNLKSTQNAL---TNA------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L---~~~------------------~gGiGKTtLA~~v~~~~~ 159 (374)
...++|.+..++++.+.+ ... +.|+||||||+.+.+...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456889988777665543 221 889999999999998553
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.28 E-value=0.042 Score=56.59 Aligned_cols=153 Identities=12% Similarity=0.200 Sum_probs=79.6
Q ss_pred ccccccccHHHHHHHHHHhh----cC------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 120 VYEAFESRVSNLKSTQNALT----NA------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~----~~------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
....+.|.+..+++|.+.+. .+ ++|+|||+||+++++... .+ .+.|+.+
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~---~~~v~~~---- 272 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGP---- 272 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CE---EEEEEHH----
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--Ce---EEEEEhH----
Confidence 34557888888877776643 22 889999999999998543 11 2333321
Q ss_pred HHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------c-----cccccC---cCCCC---
Q 045120 178 IKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKLL--------D-----LETVKI---PFRND--- 238 (374)
Q Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--------~-----~~~l~~---~~~~~--- 238 (374)
++ . ......+ +.....+.+..+....++|+||++.... . ...|.. .+...
T Consensus 273 --~l----~----sk~~ges-e~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 --EI----M----SKLAGES-ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp --HH----H----SSCTTHH-HHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred --Hh----h----cccchHH-HHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11 1 1111222 2233344444443378999999986321 0 011110 01110
Q ss_pred -----CcchhHhhhhc----CCCCceecCCCCHHHHHHHHHHhcCCCC--CCcchHHHHHHHHHHccCCc
Q 045120 239 -----SRDNNVVLLSM----GSKDNFLIANITEEEAWRLFKIMNGDDV--ENCKFKSTAINVAKACGAGL 297 (374)
Q Consensus 239 -----TR~~~va~~~~----~~~~~~~l~~L~~~~s~~Lf~~~a~~~~--~~~~l~~~~~~I~~~c~~Gl 297 (374)
|.+........ --...+.++..+.++-.++|..+..... ...++ ..|++++ .|+
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T-~Gf 406 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANET-HGH 406 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHC-CSC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhc-CCC
Confidence 22211110000 1123678888888888999988775322 12223 3566777 555
No 69
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.27 E-value=0.074 Score=48.63 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCCccHHHHHHHHHHHhhhcC---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhCcCCc----------hhh
Q 045120 142 NGGIGKTTLAKEFAKQAREDK---------LF-----DRVVFSEVSQTSDIKKIQGDIAEKLGLELS----------EEA 197 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~ 197 (374)
..|+||||||.++..+..... .. ..++|++....++...+.+ +++.++.... ..+
T Consensus 106 ~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 184 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTFVARAYN 184 (322)
T ss_dssp STTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEEEEeCCC
Confidence 889999999999887532211 11 4688999888887776664 3455554321 011
Q ss_pred H---HHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045120 198 E---YRRASRLYERLKN-ENKILVILANIW 223 (374)
Q Consensus 198 ~---~~~~~~l~~~L~~-~kr~LlVlDdv~ 223 (374)
. .+....+.+.+.. .+--+||+|.+.
T Consensus 185 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 185 SDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1 2344556666654 456799999875
No 70
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.23 E-value=0.079 Score=49.29 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc------hhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS------EEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~~kr~ 215 (374)
..|+||||||.++.......+ ..++|++....++.. .++.++.... ..+.++....+...++..+.-
T Consensus 69 ppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred CCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 889999999999988654322 347888877777654 4555654422 123445555555555544567
Q ss_pred EEEEeCCCCc
Q 045120 216 LVILANIWKL 225 (374)
Q Consensus 216 LlVlDdv~~~ 225 (374)
++|+|.+...
T Consensus 142 lvVIDSi~~l 151 (356)
T 3hr8_A 142 LIVVDSVAAL 151 (356)
T ss_dssp EEEEECTTTC
T ss_pred eEEehHhhhh
Confidence 9999998644
No 71
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.12 E-value=0.1 Score=47.70 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=59.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
+.|+||||||+.+++..... .+ ..++++. ..+...+...+... ....+.+.+. +..+|+|||
T Consensus 45 ~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~vL~iDE 106 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG--------TINEFRNMYK--SVDLLLLDD 106 (324)
T ss_dssp SSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT--------CHHHHHHHHH--TCSEEEEEC
T ss_pred CCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC--------cHHHHHHHhc--CCCEEEEcC
Confidence 88999999999999865432 12 2345542 33333333333211 0112222332 367899999
Q ss_pred CCCccc----cccccCc----CCCC-------Cc--------chhHhhhhcCCCCceecCCCCHHHHHHHHHHhcC
Q 045120 222 IWKLLD----LETVKIP----FRND-------SR--------DNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNG 274 (374)
Q Consensus 222 v~~~~~----~~~l~~~----~~~~-------TR--------~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~ 274 (374)
+..... .+.+... ...+ ++ ...+. ........+.+++ +.++..+++...+.
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~-sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV-SRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH-HHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh-hcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 864321 1111111 1111 11 11221 1233334689999 99999999988764
No 72
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.11 E-value=0.079 Score=49.53 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc------hhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS------EEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~~kr~ 215 (374)
.+|+||||||.++.......+ ..++|++....++.. .++.++.... ..+.++....+...++..+--
T Consensus 82 ~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 82 PESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred CCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 889999999999877654322 368999988777654 2455554321 123445555555555543566
Q ss_pred EEEEeCCCC
Q 045120 216 LVILANIWK 224 (374)
Q Consensus 216 LlVlDdv~~ 224 (374)
+||+|.+..
T Consensus 155 lVVIDsl~~ 163 (366)
T 1xp8_A 155 VVVVDSVAA 163 (366)
T ss_dssp EEEEECTTT
T ss_pred EEEEeChHH
Confidence 999999863
No 73
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.01 E-value=0.014 Score=46.88 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=28.3
Q ss_pred cccccHHHHHHHHHHhhc----C-------CCCccHHHHHHHHHHHh
Q 045120 123 AFESRVSNLKSTQNALTN----A-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~----~-------~gGiGKTtLA~~v~~~~ 158 (374)
.++|++..+.++.+.+.. + ..|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999988887742 1 88999999999998853
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.94 E-value=0.11 Score=45.54 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=27.9
Q ss_pred ccccccccHHHHHHHHHHhh---c------------------CCCCccHHHHHHHHHHHhh
Q 045120 120 VYEAFESRVSNLKSTQNALT---N------------------ANGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~---~------------------~~gGiGKTtLA~~v~~~~~ 159 (374)
....++|.+..+.++.+... . +..|+||||||+.+.+...
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34568888876665544322 1 0889999999999998653
No 75
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.87 E-value=0.069 Score=45.46 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=45.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcC-----------C-ch-hhHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLE-----------L-SE-EAEYRRASRLYER 208 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----------~-~~-~~~~~~~~~l~~~ 208 (374)
.+|+||||||..+.. .. -..++|++....++...+.. +.+.++.. . .. .........++..
T Consensus 28 ~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (220)
T 2cvh_A 28 PYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKT 101 (220)
T ss_dssp STTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHH
Confidence 889999999999987 21 24678888776556555443 33333221 0 01 1112334444444
Q ss_pred HhcCCeEEEEEeCCCCc
Q 045120 209 LKNENKILVILANIWKL 225 (374)
Q Consensus 209 L~~~kr~LlVlDdv~~~ 225 (374)
+.. +.-+||+|.+...
T Consensus 102 ~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 102 VDS-NFALVVVDSITAH 117 (220)
T ss_dssp CCT-TEEEEEEECCCCC
T ss_pred hhc-CCCEEEEcCcHHH
Confidence 444 5789999987643
No 76
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.86 E-value=0.1 Score=48.64 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch------hhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE------EAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~L~~~kr~ 215 (374)
.+|+||||||.++.......+ ..++|++....++.. .+..++..... .+.++....+....+..+--
T Consensus 71 ~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 71 PESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 889999999999887654332 368899988777643 24555543211 12334444444444333566
Q ss_pred EEEEeCCC
Q 045120 216 LVILANIW 223 (374)
Q Consensus 216 LlVlDdv~ 223 (374)
+||+|.+.
T Consensus 144 lVVIDsl~ 151 (356)
T 1u94_A 144 VIVVDSVA 151 (356)
T ss_dssp EEEEECGG
T ss_pred EEEEcCHH
Confidence 99999875
No 77
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.85 E-value=0.14 Score=45.71 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=29.7
Q ss_pred ccccccccccHHHHHHHHHHhh---c------------------CCCCccHHHHHHHHHHHhh
Q 045120 118 NKVYEAFESRVSNLKSTQNALT---N------------------ANGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 118 ~~~~~~~vGr~~~~~~i~~~L~---~------------------~~gGiGKTtLA~~v~~~~~ 159 (374)
......++|.+..+.++.+... . +..|+||||||+.+.+...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 3445678898877766654432 1 0789999999999998653
No 78
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.77 E-value=0.11 Score=48.13 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=48.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch------hhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE------EAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~L~~~kr~ 215 (374)
.+|+||||||.++.......+ ..++|++....++.. .++.++..... .+.++....+.......+.-
T Consensus 69 ~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 69 PESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred CCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 889999999999887654322 357899888776653 25555543221 23344444444444443567
Q ss_pred EEEEeCCCC
Q 045120 216 LVILANIWK 224 (374)
Q Consensus 216 LlVlDdv~~ 224 (374)
+||+|.+..
T Consensus 142 lIVIDsl~~ 150 (349)
T 2zr9_A 142 IIVIDSVAA 150 (349)
T ss_dssp EEEEECGGG
T ss_pred EEEEcChHh
Confidence 999998753
No 79
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.74 E-value=0.19 Score=47.44 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCCccHHHHHHHHHHHhhhc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc-------------hhhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQARED----KLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS-------------EEAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~ 204 (374)
..|+|||||+..+.-..... ..-..++|++....++...+. .+++.++.... .....+....
T Consensus 186 ~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~ 264 (400)
T 3lda_A 186 EFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDA 264 (400)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChHHHHHHHHH
Confidence 88999999999876432211 123468898877766655543 36666654311 0111233344
Q ss_pred HHHHHhcCCeEEEEEeCCC
Q 045120 205 LYERLKNENKILVILANIW 223 (374)
Q Consensus 205 l~~~L~~~kr~LlVlDdv~ 223 (374)
+.+.+...+.-+||+|.+.
T Consensus 265 ~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 265 AAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHhcCCceEEecchh
Confidence 5555554467899999864
No 80
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.72 E-value=0.052 Score=49.10 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=49.9
Q ss_pred cccccHHHHHHHHHHhhc------------C------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTN------------A------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~------------~------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
.++|.+..++.+...+.. . ..|+||||||+.+.+..... -...+.++.+....... ..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~- 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VS- 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HH-
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HH-
Confidence 467777777776666542 1 88999999999999865321 12244555443322111 11
Q ss_pred HHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 045120 185 IAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWKL 225 (374)
Q Consensus 185 i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~~ 225 (374)
..++......... ....+...+......+|+||++...
T Consensus 94 --~l~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 94 --RLIGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp --HHHCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred --HhcCCCCcccccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 1122211100000 0012334444324579999998743
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.21 Score=45.33 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcC---------CCCccHHHHHHHHHHHhhhc--CCCCeEEEEEeCC-CCCHHHHHHHHHHHhCcCCchh
Q 045120 129 SNLKSTQNALTNA---------NGGIGKTTLAKEFAKQARED--KLFDRVVFSEVSQ-TSDIKKIQGDIAEKLGLELSEE 196 (374)
Q Consensus 129 ~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~ 196 (374)
+.++.|.+.+..+ +.|+||||+|..+.+..... .+.|. ..++.+. ...+..+ +++.+.+.....
T Consensus 4 ~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p~-- 79 (305)
T 2gno_A 4 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSPE-- 79 (305)
T ss_dssp CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCCS--
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhccc--
Confidence 3444555555443 88999999999998753211 23333 4555432 3333332 334444422110
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--ccc----cccCcCCCC------CcchhHhhhhcCCCCceecCCCCHHH
Q 045120 197 AEYRRASRLYERLKNENKILVILANIWKLL--DLE----TVKIPFRND------SRDNNVVLLSMGSKDNFLIANITEEE 264 (374)
Q Consensus 197 ~~~~~~~~l~~~L~~~kr~LlVlDdv~~~~--~~~----~l~~~~~~~------TR~~~va~~~~~~~~~~~l~~L~~~~ 264 (374)
.+++-++|+|++..-. ..+ .+..|-+.. +....+.. ..... .+++.++++++
T Consensus 80 --------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~-tI~SR-~~~f~~l~~~~ 143 (305)
T 2gno_A 80 --------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP-TIKSR-VFRVVVNVPKE 143 (305)
T ss_dssp --------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH-HHHTT-SEEEECCCCHH
T ss_pred --------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH-HHHce-eEeCCCCCHHH
Confidence 1246788888886431 122 222222222 22222322 22222 89999999999
Q ss_pred HHHHHHHhc
Q 045120 265 AWRLFKIMN 273 (374)
Q Consensus 265 s~~Lf~~~a 273 (374)
..+.+.+..
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988876
No 82
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.38 E-value=0.039 Score=50.31 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhc-----C-------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 045120 128 VSNLKSTQNALTN-----A-------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV 172 (374)
Q Consensus 128 ~~~~~~i~~~L~~-----~-------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 172 (374)
...++.+.+++.. . ..|+|||+||..+++.......+ .++++++
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEEH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEH
Confidence 3344555566653 2 88999999999999865512223 3455554
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.30 E-value=0.081 Score=54.85 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=30.8
Q ss_pred cccccccHHHHHHHHHHhhc-----------C-----------CCCccHHHHHHHHHHHh
Q 045120 121 YEAFESRVSNLKSTQNALTN-----------A-----------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~-----------~-----------~gGiGKTtLA~~v~~~~ 158 (374)
...++|.+..+++|.+++.. . ..|+||||||+.+.+..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45689999999888887753 0 78999999999998743
No 84
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.23 E-value=0.11 Score=50.08 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.5
Q ss_pred cccccccHHHHHHHHH---HhhcC-----------CCCccHHHHHHHHHHHhh
Q 045120 121 YEAFESRVSNLKSTQN---ALTNA-----------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~---~L~~~-----------~gGiGKTtLA~~v~~~~~ 159 (374)
...++|.+..++.+.. .+..+ ++|+|||+||+.+.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4679999988776544 33332 889999999999998654
No 85
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.21 E-value=0.26 Score=44.87 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
.+|+||||||.++..+...++ ..++|++.. -+...+...++.
T Consensus 76 ~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 789999999999887655433 567787655 445555555544
No 86
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=94.19 E-value=0.17 Score=38.78 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=50.6
Q ss_pred hhHHHh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHhh-hhHHHHHHHHHH
Q 045120 18 PPTERQ-LVYLRKRNYNANLENLKAELEKLKVERTSIQLRVSEAKEKG-EEIEEKVEKWLTRY-QLSKKAKTEVKA 90 (374)
Q Consensus 18 ~~~~~~-~~~~~~~~~~~~~~~l~~~l~~L~~~l~~v~~~i~~a~~~~-~~~~~~v~~wl~r~-~~~~~i~~~~~~ 90 (374)
+.+..+ .+++ ..-...+.+++++++.|++.|..+++++.+|++.. ...+..++.|+... .++.+++++.+.
T Consensus 4 ~~ll~KL~~ll--~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~ 77 (115)
T 3qfl_A 4 SNLIPKLGELL--TEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK 77 (115)
T ss_dssp CSHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 4455 56677888999999999999999999999999874 23468899998222 344455554444
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.93 E-value=0.063 Score=48.52 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=16.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|+|||+||+.+++...
T Consensus 44 ppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 899999999999999663
No 88
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.91 E-value=0.27 Score=47.31 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=53.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------------CchhhHH------HH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------------LSEEAEY------RR 201 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------------~~~~~~~------~~ 201 (374)
..|+|||+|++.+.++.. +.+-+.++++-++... ...++.+++...=... ..+++.. ..
T Consensus 161 g~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~ 239 (482)
T 2ck3_D 161 GAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALT 239 (482)
T ss_dssp CTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHH
Confidence 789999999999988643 2345778888888875 4566777776542211 1111111 12
Q ss_pred HHHHHHHHhc--CCeEEEEEeCCCCc
Q 045120 202 ASRLYERLKN--ENKILVILANIWKL 225 (374)
Q Consensus 202 ~~~l~~~L~~--~kr~LlVlDdv~~~ 225 (374)
.-.+.++++. ++..||++||+...
T Consensus 240 a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 240 GLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 3345666654 68999999998643
No 89
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.71 E-value=0.22 Score=47.95 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=47.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCc-------CCchhhHH------HHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGL-------ELSEEAEY------RRASRLYE 207 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~------~~~~~l~~ 207 (374)
..|+|||||++.+.++..... -+.++++-+++.. ...++..++...-.. ....++.. ...-.+.+
T Consensus 159 ~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAE 237 (473)
T 1sky_E 159 GAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAE 237 (473)
T ss_dssp CSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 889999999999988765432 2456777777664 344555544432100 01111111 11124455
Q ss_pred HHhc--CCeEEEEEeCCCC
Q 045120 208 RLKN--ENKILVILANIWK 224 (374)
Q Consensus 208 ~L~~--~kr~LlVlDdv~~ 224 (374)
++.. +++.||++||+..
T Consensus 238 yFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 238 YFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHSCCEEEEEEECTHH
T ss_pred HHHHhcCCcEEEEeccHHH
Confidence 5543 5899999999853
No 90
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.60 E-value=0.27 Score=47.50 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=54.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCcC--------------CchhhHH------H
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAEKLGLE--------------LSEEAEY------R 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~--------------~~~~~~~------~ 200 (374)
..|+|||+|++.+.++... .+-+.++|+-++... ...++.+++...=... ..+++.. .
T Consensus 173 g~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~ 251 (498)
T 1fx0_B 173 GAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL 251 (498)
T ss_dssp CSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHH
T ss_pred CCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHH
Confidence 7799999999999886432 345788999988876 4566777766532111 1111111 2
Q ss_pred HHHHHHHHHhc--CCeEEEEEeCCCC
Q 045120 201 RASRLYERLKN--ENKILVILANIWK 224 (374)
Q Consensus 201 ~~~~l~~~L~~--~kr~LlVlDdv~~ 224 (374)
..-.+.++++. ++..||++||+..
T Consensus 252 ~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 252 TALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 23456677765 6899999999864
No 91
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.46 E-value=0.06 Score=47.61 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=29.5
Q ss_pred cccccccHHHHHHHHHHhhc----------------C-----CCCccHHHHHHHHHHHhh
Q 045120 121 YEAFESRVSNLKSTQNALTN----------------A-----NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~----------------~-----~gGiGKTtLA~~v~~~~~ 159 (374)
...++|.+..++.+.+.+.. + +.|+|||+||+.+++...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45688988877777665541 1 789999999999998653
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.13 E-value=0.068 Score=43.05 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=21.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
..|+|||||++.+++..... .+ ..+++....
T Consensus 44 ~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp SSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 78999999999999866532 12 256665443
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.04 E-value=0.065 Score=49.09 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=31.2
Q ss_pred ccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~ 158 (374)
..++|++..++.+...+..+ ..|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45889999999888887655 88999999999998854
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.03 E-value=0.39 Score=40.87 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGD 184 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 184 (374)
..|+|||||++.+.......+ ..++|++... ....+...
T Consensus 31 ~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp STTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 789999999999986544222 2456665433 34444433
No 95
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.76 E-value=0.16 Score=49.41 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=29.8
Q ss_pred cccccccccHHHHHHHHHHh---hcC------------------CCCccHHHHHHHHHHHhh
Q 045120 119 KVYEAFESRVSNLKSTQNAL---TNA------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L---~~~------------------~gGiGKTtLA~~v~~~~~ 159 (374)
.....++|.+..+.++.+.+ ... +.|+||||||+.+.+...
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 33556899988777665543 221 889999999999998653
No 96
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.74 E-value=0.093 Score=47.23 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=30.3
Q ss_pred ccccccHHHHHHHHHHhhc----------------C-------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN----------------A-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~----------------~-------~gGiGKTtLA~~v~~~~ 158 (374)
..++|.+..++.+...+.. + ..|+|||+||+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999888877754 1 88999999999998855
No 97
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.71 E-value=4.3 Score=38.71 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
.+|+||||||..+..+...... ..++|++... +...+...++
T Consensus 211 ~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 211 RPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHH
Confidence 7799999999999887654321 2567776443 3445555443
No 98
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.63 E-value=0.16 Score=47.68 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=42.5
Q ss_pred CCCccHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCCCHHHHHHHHHHHhCc----CCchhhHH------HHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQARED-KLFDRVVFSEVSQTSDIKKIQGDIAEKLGL----ELSEEAEY------RRASRLYERLK 210 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~----~~~~~~~~------~~~~~l~~~L~ 210 (374)
..|+|||||++.+.+..... ..++ ++++-+++..+-.. ++.+.+.. ...+++.. ...-.+.+++.
T Consensus 182 ~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~---~~~~~~~~~vV~atadep~~~r~~~a~~alt~AEyfr 257 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVT---EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 257 (422)
T ss_dssp CSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHH---HHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHH---HHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999987754321 1233 34677776643221 22233211 11111111 11122344443
Q ss_pred -cCCeEEEEEeCCCCc
Q 045120 211 -NENKILVILANIWKL 225 (374)
Q Consensus 211 -~~kr~LlVlDdv~~~ 225 (374)
.++..||++||+...
T Consensus 258 d~G~dVLil~DslTR~ 273 (422)
T 3ice_A 258 EHKKDVIILLDSITRL 273 (422)
T ss_dssp HTSCEEEEEEECHHHH
T ss_pred hcCCCEEEEEeCchHH
Confidence 258999999998643
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.31 E-value=1 Score=38.24 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=44.0
Q ss_pred CCCccHHHHHHHHHHHhhhc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc-------------hhhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQARED---K-LFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS-------------EEAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~ 204 (374)
..|+|||||++.+....... . .-...+|+.-...+.... ...+.+.++.... ..........
T Consensus 33 ~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 111 (231)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChHHHHHHHHH
Confidence 88999999999998743321 1 124577877555444333 2334444432211 1111122344
Q ss_pred HHHHHh-----cCCeEEEEEeCCC
Q 045120 205 LYERLK-----NENKILVILANIW 223 (374)
Q Consensus 205 l~~~L~-----~~kr~LlVlDdv~ 223 (374)
+.+.+. ..+.-+||||...
T Consensus 112 ~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 112 AEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp HHHHHHHHTTSSSCEEEEEEETSS
T ss_pred HHHHHHHhcccCCceeEEEECChH
Confidence 444444 3367799999764
No 100
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.27 E-value=0.35 Score=46.24 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCC----eEEEEEeCCCC-CHHHHHHHHHHHhCc-------CCchhhHH------HHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFD----RVVFSEVSQTS-DIKKIQGDIAEKLGL-------ELSEEAEY------RRAS 203 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~~~~~~~~------~~~~ 203 (374)
..|+|||+|+.++.+.... +-+ .++++-+++.. ...++.+++...=.. ...+++.. ...-
T Consensus 159 g~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~ 236 (465)
T 3vr4_D 159 GSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMAL 236 (465)
T ss_dssp CTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHH
Confidence 6799999999999986653 223 67788888765 455666665443111 11112211 1234
Q ss_pred HHHHHHhc--CCeEEEEEeCCCC
Q 045120 204 RLYERLKN--ENKILVILANIWK 224 (374)
Q Consensus 204 ~l~~~L~~--~kr~LlVlDdv~~ 224 (374)
.+.++++. ++..||++||+..
T Consensus 237 tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 237 TAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHhcCCeEEEEEcChHH
Confidence 56777763 6899999999864
No 101
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.27 E-value=0.075 Score=46.98 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=26.7
Q ss_pred ccccccHHHHHHHHHHhhc----C-------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN----A-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~----~-------~gGiGKTtLA~~v~~~~ 158 (374)
..++|.+..+.++.+.+.. + ..|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4578999888888776643 1 78999999999998853
No 102
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.15 E-value=0.3 Score=50.31 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=51.1
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
...+.|.++.+++|.+.+.-. ++|+|||.||+++.+.... -++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEec----c
Confidence 445778888888877665422 8899999999999985431 233332 1
Q ss_pred HHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045120 179 KKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILANIWK 224 (374)
Q Consensus 179 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDdv~~ 224 (374)
.++ +. .+-..+ +.....+++.-+....+.|+||++..
T Consensus 545 ~~l----~s----~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PEL----LT----MWFGES-EANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HHH----HT----TTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred chh----hc----cccchH-HHHHHHHHHHHHHcCCceeechhhhH
Confidence 221 11 111122 23345555555544689999999863
No 103
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.78 E-value=0.16 Score=46.74 Aligned_cols=47 Identities=15% Similarity=-0.113 Sum_probs=34.0
Q ss_pred ceecCCCCHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHccCCchHHHH
Q 045120 254 NFLIANITEEEAWRLFKIMNGDDVENCKFKSTAINVAKACGAGLFCTLT 302 (374)
Q Consensus 254 ~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l~~~~~~I~~~c~~GlPLai~ 302 (374)
.+.+++.+.++-.+++.+.+..... .--.+.+..|+..+ +|.|-.+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~-~G~~R~a~ 220 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRS-RGTPRIAI 220 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTS-TTCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhc-CCChHHHH
Confidence 4789999999999999987642111 11235677899999 99996553
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.73 E-value=0.67 Score=42.86 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=47.2
Q ss_pred CCCccHHHHHHHHHHHhhhc---CCC-CeEEEEEeCCCCCHHHHHHHHHHHhCcCC-------------chhhHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQARED---KLF-DRVVFSEVSQTSDIKKIQGDIAEKLGLEL-------------SEEAEYRRASR 204 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-------------~~~~~~~~~~~ 204 (374)
..|+|||||+.++....... +.. ..++|++....+....+ ..+++.++... ......+....
T Consensus 139 ~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~ 217 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 217 (349)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHH
Confidence 88999999999998754211 111 24588887665544433 33444443221 11112234445
Q ss_pred HHHHHhc-----CCeEEEEEeCCCCc
Q 045120 205 LYERLKN-----ENKILVILANIWKL 225 (374)
Q Consensus 205 l~~~L~~-----~kr~LlVlDdv~~~ 225 (374)
+...+.. .+.-+||+|.+-..
T Consensus 218 ~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 218 AEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHhccccCCCCEEEEeCchHh
Confidence 5555543 36789999988543
No 105
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.37 E-value=0.11 Score=50.65 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=31.3
Q ss_pred ccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~ 158 (374)
..++|++..++.+...+..+ .+|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 34889999999888887765 88999999999998854
No 106
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.36 E-value=0.29 Score=46.99 Aligned_cols=83 Identities=27% Similarity=0.310 Sum_probs=51.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCC--CeEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhHH------HHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLF--DRVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAEY------RRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l 205 (374)
..|+|||+|+..+.++....+.= +.++++-++... ...++.+++...=... ..+++.. ...-.+
T Consensus 160 g~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~ti 239 (469)
T 2c61_A 160 ASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTA 239 (469)
T ss_dssp CTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 77999999999999876542211 367788888765 4556666665431111 1111111 123356
Q ss_pred HHHHh--cCCeEEEEEeCCCC
Q 045120 206 YERLK--NENKILVILANIWK 224 (374)
Q Consensus 206 ~~~L~--~~kr~LlVlDdv~~ 224 (374)
.++++ .++..||++||+..
T Consensus 240 AEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 240 AEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHhcCCeEEEEEeCHHH
Confidence 66666 36999999999854
No 107
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.15 E-value=4.7 Score=41.93 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.3
Q ss_pred ccccccHHHHHHHHHHhhc-------------C-----CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN-------------A-----NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~-------------~-----~gGiGKTtLA~~v~~~~ 158 (374)
..++|.+..++.+...+.. . ..|+|||+||+.+.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999988888776642 1 77999999999998864
No 108
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.04 E-value=1 Score=42.97 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
.+|+||||||..+..+...... ..++|++.. -+...+...++.
T Consensus 208 ~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHH
Confidence 8899999999998887653321 246776654 445566666554
No 109
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.64 E-value=0.15 Score=46.88 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=28.4
Q ss_pred ccccccccHHHHHHHHHHhhcC---------CCCccHHHHHHHHHHHh
Q 045120 120 VYEAFESRVSNLKSTQNALTNA---------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 120 ~~~~~vGr~~~~~~i~~~L~~~---------~gGiGKTtLA~~v~~~~ 158 (374)
....++|.+..+..+...+... ..|+|||+||+.+.+..
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3456899988666654444321 78999999999999854
No 110
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.43 E-value=0.13 Score=48.15 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=46.9
Q ss_pred HHHHHhhcC----------CCCccHHHHHHHHHHHhhhc-CCCCeEEEEEeCCCCCH-HHHHHHHHHHhCcCCchhhHH-
Q 045120 133 STQNALTNA----------NGGIGKTTLAKEFAKQARED-KLFDRVVFSEVSQTSDI-KKIQGDIAEKLGLELSEEAEY- 199 (374)
Q Consensus 133 ~i~~~L~~~----------~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~-~~~~~~i~~~l~~~~~~~~~~- 199 (374)
++++.|..- ..|+|||+|++.+.+..... ..+. ++++-+++..+- .++.+.+...+-....+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~ 242 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDK 242 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHH
Confidence 566666542 78999999999998865422 1232 356766655321 111111100010111111111
Q ss_pred -----HHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 045120 200 -----RRASRLYERLK-NENKILVILANIWKL 225 (374)
Q Consensus 200 -----~~~~~l~~~L~-~~kr~LlVlDdv~~~ 225 (374)
...-.+.+++. .++..||++||+...
T Consensus 243 r~~~a~~altiAEyfrd~G~dVLil~DslTR~ 274 (427)
T 3l0o_A 243 QVKVAELTLEMAKRLVEFNYDVVILLDSLTRL 274 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccchHH
Confidence 11223444444 258999999998643
No 111
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.40 E-value=0.9 Score=39.02 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
..|+||||||.++.......+ ..++|++...
T Consensus 31 ~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~ 61 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNGLKMG--EPGIYVALEE 61 (247)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred CCCCCHHHHHHHHHHHHHhcC--CeEEEEEccC
Confidence 889999999988866543221 3567776543
No 112
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.37 E-value=1.1 Score=43.48 Aligned_cols=84 Identities=15% Similarity=0.272 Sum_probs=49.2
Q ss_pred CCCccHHHHH-HHHHHHhhh----cCCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHH------HH
Q 045120 142 NGGIGKTTLA-KEFAKQARE----DKLFD-RVVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEY------RR 201 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~------~~ 201 (374)
..|+|||+|| ..+.|.... .++-+ .++++-+++..+ ..++.+.+...=... ..+++.. ..
T Consensus 170 ~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~ 249 (510)
T 2ck3_A 170 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYS 249 (510)
T ss_dssp STTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHH
Confidence 7799999995 567765542 12345 478888887754 556666655422111 1111111 11
Q ss_pred HHHHHHHHhc-CCeEEEEEeCCCCc
Q 045120 202 ASRLYERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 202 ~~~l~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.-.+.++++. ++..||++||+...
T Consensus 250 a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 250 GCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 2345555553 58999999998643
No 113
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.32 E-value=0.82 Score=41.20 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=37.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCcCCch-hhHHHHHHHHHHHHhcCCeEEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-TSDIKKIQGDIAEKLGLELSE-EAEYRRASRLYERLKNENKILVIL 219 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~L~~~kr~LlVl 219 (374)
.+|+||||++..+.......... .+..+.... .....+.+....+..+.+... .+...+...+. .+ . +.=++|+
T Consensus 113 ~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~-~-~~dlvIi 188 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF-S-EYDHVFV 188 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-G-GSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-c-CCCEEEE
Confidence 78999999999988765532222 344444322 223333344444444433211 12222322233 23 3 3457888
Q ss_pred eC
Q 045120 220 AN 221 (374)
Q Consensus 220 Dd 221 (374)
|-
T Consensus 189 DT 190 (296)
T 2px0_A 189 DT 190 (296)
T ss_dssp EC
T ss_pred eC
Confidence 83
No 114
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.25 E-value=0.17 Score=45.95 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=29.5
Q ss_pred cccccHHHHHHHHHHhhc----C-------CCCccHHHHHHHHHHHh
Q 045120 123 AFESRVSNLKSTQNALTN----A-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~----~-------~gGiGKTtLA~~v~~~~ 158 (374)
.++|++..+.++.+.+.. + ..|+|||++|+.+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 478999888888887753 1 78999999999998853
No 115
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.11 E-value=0.23 Score=46.04 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=28.7
Q ss_pred cccccHHHHHHHHHHhh-----------------cC-------CCCccHHHHHHHHHHHh
Q 045120 123 AFESRVSNLKSTQNALT-----------------NA-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~-----------------~~-------~gGiGKTtLA~~v~~~~ 158 (374)
.++|.+..++.+...+. .. +.|+|||++|+.+.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36888888888877772 11 88999999999999855
No 116
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.09 E-value=0.48 Score=53.46 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=50.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc------hhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS------EEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~~kr~ 215 (374)
+.|+|||+||.++.......+ ..++|+++...++... ++.++.+.. ..+.++....+++..+..+.-
T Consensus 1435 ppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1435 PESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 899999999999987554222 3578888888877665 455553211 122344555566565555778
Q ss_pred EEEEeCCC
Q 045120 216 LVILANIW 223 (374)
Q Consensus 216 LlVlDdv~ 223 (374)
+||+|.+.
T Consensus 1508 lVVIDsi~ 1515 (2050)
T 3cmu_A 1508 VIVVDSVA 1515 (2050)
T ss_dssp EEEESCGG
T ss_pred EEEEcChh
Confidence 99999984
No 117
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.03 E-value=0.19 Score=51.67 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=35.7
Q ss_pred ccccccHHHHHHHHHHhhcC------------------CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 122 EAFESRVSNLKSTQNALTNA------------------NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~~------------------~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
..++|.+..++.+.+.+... +.|+|||+||+.+.+... ..-...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechh
Confidence 45889999888887776521 789999999999998652 1122345555543
No 118
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.92 E-value=0.28 Score=41.33 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHhhcC------------CCCccHHHHHHHHHHHhh
Q 045120 127 RVSNLKSTQNALTNA------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 127 r~~~~~~i~~~L~~~------------~gGiGKTtLA~~v~~~~~ 159 (374)
|++.+++|.+.+... ..|+|||||++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455566666665531 889999999999987543
No 119
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.53 E-value=0.71 Score=44.12 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=50.3
Q ss_pred CCCccHHHHHHHHHHHhhhc--------CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCcC-------CchhhH------
Q 045120 142 NGGIGKTTLAKEFAKQARED--------KLFD-RVVFSEVSQTS-DIKKIQGDIAEKLGLE-------LSEEAE------ 198 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~------ 198 (374)
..|+|||+|+.++.+..... ++=+ .++++-+++.. ...++.+++...=... ..+++.
T Consensus 155 g~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~ 234 (464)
T 3gqb_B 155 GSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILT 234 (464)
T ss_dssp ETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHH
Confidence 67999999999998876531 1222 56788888765 3455555544321010 111111
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045120 199 YRRASRLYERLKN--ENKILVILANIWK 224 (374)
Q Consensus 199 ~~~~~~l~~~L~~--~kr~LlVlDdv~~ 224 (374)
....-.+.++++. ++..||++||+..
T Consensus 235 ~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 235 PRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1123456777763 6899999999864
No 120
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.48 E-value=1.6 Score=40.10 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEK 188 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 188 (374)
.+|+||||||..+..+....+ ..++|++. .-+...+...++..
T Consensus 54 ~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 54 RPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp CTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHHHHHH
Confidence 789999999999988765422 35666654 44556666666544
No 121
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.45 E-value=0.85 Score=39.25 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=24.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDI 185 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 185 (374)
.+|+||||||.++..+..... -..++|++.. .+...+.+.+
T Consensus 38 ~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 38 GTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp CTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 789999999988765432221 2345666544 3444444443
No 122
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.99 E-value=1 Score=43.54 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=48.2
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHHH------HHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDR-VVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEYR------RASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~l 205 (374)
..|+|||+|| ..+.|.. +-+. ++++-+++..+ ..++.+.+...=... ..+++... ..-.+
T Consensus 170 ~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti 245 (502)
T 2qe7_A 170 DRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAM 245 (502)
T ss_dssp CSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7799999996 5777744 2564 57888888753 556666665422111 11111111 12345
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.++++. ++..||++||+...
T Consensus 246 AEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 246 GEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHcCCcEEEEEecHHHH
Confidence 555653 58999999998643
No 123
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.87 E-value=0.47 Score=48.73 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=29.3
Q ss_pred ccccccHHHHHHHHHHhhc-------------C-----CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN-------------A-----NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~-------------~-----~gGiGKTtLA~~v~~~~ 158 (374)
..++|.+..++.+...+.. . ..|+|||+||+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3588999988887776642 1 78999999999998855
No 124
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.76 E-value=0.93 Score=50.46 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=49.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCC------chhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLEL------SEEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~L~~~kr~ 215 (374)
..|+||||||.++.......+ ..++|++.....+.. .++.++... ...+.++....+++.....+--
T Consensus 740 ~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~ 812 (1706)
T 3cmw_A 740 PESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (1706)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCC
Confidence 789999999999988665332 357888777766543 255665432 1224455555665555444667
Q ss_pred EEEEeCCCC
Q 045120 216 LVILANIWK 224 (374)
Q Consensus 216 LlVlDdv~~ 224 (374)
+||+|.+..
T Consensus 813 lVVIDsLq~ 821 (1706)
T 3cmw_A 813 VIVVDSVAA 821 (1706)
T ss_dssp EEEESCSTT
T ss_pred EEEEechhh
Confidence 999999864
No 125
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.76 E-value=1.5 Score=36.80 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=39.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch------hhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE------EAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~L~~~kr~ 215 (374)
.-|+||||+++.+.+.....+ ++ +++..-.......+....++..-...... .+..+....+...|..+ .
T Consensus 8 ~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~g--~ 83 (197)
T 3hjn_A 8 IDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSEG--Y 83 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTT--C
T ss_pred CCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHCC--C
Confidence 459999999999998766433 23 33333232223344444444322111100 01222334566666653 4
Q ss_pred EEEEeCC
Q 045120 216 LVILANI 222 (374)
Q Consensus 216 LlVlDdv 222 (374)
.+|.|--
T Consensus 84 ~Vi~DRy 90 (197)
T 3hjn_A 84 AVLLDRY 90 (197)
T ss_dssp EEEEESC
T ss_pred eEEeccc
Confidence 5677754
No 126
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.49 E-value=1.1 Score=43.98 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=47.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHH----HhCcC----------CchhhHHH------
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAE----KLGLE----------LSEEAEYR------ 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~----~l~~~----------~~~~~~~~------ 200 (374)
..|+|||+|+.++.+... -+.++++-++... ...++++++-+ .++.. ..+++...
T Consensus 240 g~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~ 315 (600)
T 3vr4_A 240 PFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIY 315 (600)
T ss_dssp CTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHH
Confidence 679999999999988533 4678898888774 34455544322 11211 11111111
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCC
Q 045120 201 RASRLYERLKN-ENKILVILANIW 223 (374)
Q Consensus 201 ~~~~l~~~L~~-~kr~LlVlDdv~ 223 (374)
..-.+.++++. ++..||++|++.
T Consensus 316 ~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 316 TGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHcCCCEEEEecchH
Confidence 12345556653 589999999986
No 127
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.32 E-value=0.22 Score=40.77 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 11 ~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 88999999999998754
No 128
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.32 E-value=1.5 Score=41.86 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
.+|+||||||.++..+...++ ..++|++...
T Consensus 205 ~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm 235 (444)
T 3bgw_A 205 RPSMGKTAFALKQAKNMSDND--DVVNLHSLEM 235 (444)
T ss_dssp CSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred CCCCChHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence 889999999999988765442 2567775543
No 129
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.19 E-value=1.4 Score=43.13 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=48.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC-HHHHHHHHHH----HhCc----------CCchhhHHH------
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD-IKKIQGDIAE----KLGL----------ELSEEAEYR------ 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~----~l~~----------~~~~~~~~~------ 200 (374)
..|+|||+|++.+.+.. +-+.++++-+++..+ ..++.+++-+ ..+. ...+++...
T Consensus 235 ~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~ 310 (588)
T 3mfy_A 235 PAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIY 310 (588)
T ss_dssp CCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHHHHHHHHH
Confidence 66899999999987743 246788999998765 4455555422 1110 011111111
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCCc
Q 045120 201 RASRLYERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 201 ~~~~l~~~L~~-~kr~LlVlDdv~~~ 225 (374)
..-.+.+++++ ++..||++||+...
T Consensus 311 ~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 311 TGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred HHHHHHHHHHHcCCCEEEeecchHHH
Confidence 12244555543 58999999999743
No 130
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.14 E-value=1.1 Score=43.40 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHH------HHHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDR-VVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEY------RRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l 205 (374)
..|+|||+|| ..+.|.. .-+. ++++-+++..+ ..++.+.+...=... ..+++.. ...-.+
T Consensus 183 ~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 258 (515)
T 2r9v_A 183 DRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAM 258 (515)
T ss_dssp ETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7799999996 5777743 2564 57888887753 556666665421111 1111111 122345
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.++++. ++..||++||+...
T Consensus 259 AEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 259 GEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHcCCcEEEEeccHHHH
Confidence 556653 58999999998643
No 131
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.83 E-value=0.58 Score=39.67 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKK 180 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 180 (374)
-||+||||+|..+..-....+ .++-|+.....+...
T Consensus 9 KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 9 KGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATG 44 (209)
T ss_dssp STTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHH
Confidence 699999999999887655332 566776665544433
No 132
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.80 E-value=1.5 Score=37.70 Aligned_cols=15 Identities=47% Similarity=0.665 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+|||||++.+..
T Consensus 38 pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999999884
No 133
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.69 E-value=2.1 Score=41.34 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=46.7
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCCe-EEEEEeCCCCC-HHHHHHHHHHHhCcC-------CchhhHH------HHHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFDR-VVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEEAEY------RRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~~~~------~~~~~l 205 (374)
..|+|||+|| ..+.|. .+-+. ++++-+++..+ ..++.+++...=... ..+++.. ...-.+
T Consensus 170 ~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti 245 (513)
T 3oaa_A 170 DRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAM 245 (513)
T ss_dssp SSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHH
Confidence 5599999996 567663 23443 67888888754 556666654431111 1111111 112244
Q ss_pred HHHHhc-CCeEEEEEeCCCCc
Q 045120 206 YERLKN-ENKILVILANIWKL 225 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~~ 225 (374)
.+++++ ++..||++||+...
T Consensus 246 AEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 246 GEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHhcCCCEEEEecChHHH
Confidence 555543 58999999998643
No 134
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.56 E-value=0.41 Score=47.82 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=33.2
Q ss_pred cccccccccHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHh
Q 045120 119 KVYEAFESRVSNLKSTQNALTNA-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 119 ~~~~~~vGr~~~~~~i~~~L~~~-------~gGiGKTtLA~~v~~~~ 158 (374)
.....++|.+..++.+...+..+ ..|+||||||+.+.+..
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34456899999998888888766 88999999999998844
No 135
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.41 E-value=2 Score=40.82 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=39.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHH--HHHHHHHhCcCC----chhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKI--QGDIAEKLGLEL----SEEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~--~~~i~~~l~~~~----~~~~~~~~~~~l~~~L~~~kr~ 215 (374)
.+|+||||++..+.......+ ..+..+. ...+..... +.......+.+. ...++.+......+.++...-=
T Consensus 106 ~~GsGKTT~~~~LA~~l~~~g--~~Vllvd-~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~D 182 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGKG--RRPLLVA-ADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARD 182 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT--CCEEEEE-CCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CeEEEee-ccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHCCCC
Confidence 899999999999887665332 1234443 344444332 344455555431 1123333333344444321223
Q ss_pred EEEEeCC
Q 045120 216 LVILANI 222 (374)
Q Consensus 216 LlVlDdv 222 (374)
++|+|-.
T Consensus 183 vVIIDTa 189 (425)
T 2ffh_A 183 LILVDTA 189 (425)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 6777754
No 136
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.36 E-value=0.16 Score=43.85 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=40.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch---hhHHHHHHHHHHHHhcCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE---EAEYRRASRLYERLKNENKILVI 218 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~L~~~kr~LlV 218 (374)
..|+||||++..+.++....+ . .++.+.-.... . ....|++.++..... .+..+....+.+.+..++.-+||
T Consensus 20 ~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 20 PMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp STTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 669999999988887665332 2 33444322221 1 222445555544322 12233344444444332345999
Q ss_pred EeCCC
Q 045120 219 LANIW 223 (374)
Q Consensus 219 lDdv~ 223 (374)
+|.+.
T Consensus 95 IDEaQ 99 (223)
T 2b8t_A 95 IDEVQ 99 (223)
T ss_dssp ECSGG
T ss_pred EecCc
Confidence 99885
No 137
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.32 E-value=2.7 Score=39.99 Aligned_cols=20 Identities=40% Similarity=0.425 Sum_probs=16.4
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 045120 142 NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~ 161 (374)
.||+||||++..+......+
T Consensus 108 ~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 79999999998888766543
No 138
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.23 E-value=1.3 Score=49.95 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=50.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCc------hhhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELS------EEAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~L~~~kr~ 215 (374)
.+|+||||||.++..+....+ ..++|++....++... ++.++.... ..+.++....+....+..+.-
T Consensus 391 ~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~ 463 (2050)
T 3cmu_A 391 PESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 463 (2050)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCc
Confidence 889999999999988665332 3688998887776542 556665321 224455555555555444567
Q ss_pred EEEEeCCC
Q 045120 216 LVILANIW 223 (374)
Q Consensus 216 LlVlDdv~ 223 (374)
+||+|-+.
T Consensus 464 lIVIDSL~ 471 (2050)
T 3cmu_A 464 VIVVDSVA 471 (2050)
T ss_dssp EEEESCGG
T ss_pred EEEECCHH
Confidence 99999875
No 139
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.12 E-value=1.6 Score=39.30 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=41.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCcCC----chhhHHHHHHHHHHHHhcCCeEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT-SDIKKIQGDIAEKLGLEL----SEEAEYRRASRLYERLKNENKIL 216 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~l~~~L~~~kr~L 216 (374)
.+|+||||++..+.......+ ..+.++..... +.....+.......+.+. ...+..+......+.++.+.-=+
T Consensus 106 ~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ 183 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEI 183 (297)
T ss_dssp SSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 799999999999887654332 23445543322 222333444455554432 11233444444444554213337
Q ss_pred EEEeCC
Q 045120 217 VILANI 222 (374)
Q Consensus 217 lVlDdv 222 (374)
+|+|-.
T Consensus 184 ViIDTp 189 (297)
T 1j8m_F 184 IIVDTA 189 (297)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 888864
No 140
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.08 E-value=0.28 Score=39.72 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 9 ~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 141
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.98 E-value=0.5 Score=43.95 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||+||+.+.+..
T Consensus 80 p~GtGKT~la~~la~~l 96 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999999854
No 142
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.75 E-value=0.26 Score=39.86 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=12.5
Q ss_pred CCCccHHHHHHHH
Q 045120 142 NGGIGKTTLAKEF 154 (374)
Q Consensus 142 ~gGiGKTtLA~~v 154 (374)
+.|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 7899999999999
No 143
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.61 E-value=3 Score=40.43 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=28.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
.+|+||||||.++..+...... ..++|++... +..++...++.
T Consensus 250 ~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 250 GSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp SSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHHHH
Confidence 8899999999998876653311 2567776543 45566665543
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.35 E-value=0.31 Score=39.73 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+||||+|+.+..
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 789999999999987
No 145
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.73 E-value=0.72 Score=39.73 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
-||+||||+|..+.......+ ..++-|+.....++.
T Consensus 8 kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 599999999999887665332 345666655444433
No 146
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.70 E-value=0.43 Score=41.20 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=21.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
.||+||||+|..+......++ ++. +++.+..
T Consensus 14 kgGvGKTt~a~~la~~l~~~G-~~V-~v~d~D~ 44 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQG-VRV-MAGVVET 44 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-CCE-EEEECCC
T ss_pred CCCCcHHHHHHHHHHHHHHCC-CCE-EEEEeCC
Confidence 899999999988887665333 443 4444443
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.57 E-value=0.66 Score=41.58 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||||+.+...
T Consensus 41 ~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CTTSCTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8899999999999874
No 148
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.21 E-value=0.4 Score=39.46 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 13 ~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 149
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.12 E-value=0.41 Score=40.14 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 89999999999998754
No 150
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.10 E-value=0.39 Score=38.96 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 12 ~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998753
No 151
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.10 E-value=0.42 Score=39.38 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 789999999999988654
No 152
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.87 E-value=0.59 Score=39.46 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+..-..
T Consensus 30 ~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CTTSCTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 789999999999987654
No 153
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.85 E-value=0.44 Score=39.24 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 11 ~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 789999999999988543
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.65 E-value=0.37 Score=39.83 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||++.+...
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 8899999999999863
No 155
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=84.36 E-value=0.52 Score=39.39 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
-||+||||+|..+.......+ ..++.|+.....+.
T Consensus 10 kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 10 KGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSL 44 (206)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred CCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCH
Confidence 699999999998877655332 24566666544443
No 156
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.32 E-value=4.2 Score=36.70 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=40.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH--HHHHHHHHhCcCC----chhhHHHH-HHHHHHHHhcCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKK--IQGDIAEKLGLEL----SEEAEYRR-ASRLYERLKNENK 214 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~----~~~~~~~~-~~~l~~~L~~~kr 214 (374)
.+|+||||++..+.......+ ..+.++.. ..+.... -+...++.++.+. ...+.... ...+...+.. +.
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~-~~ 187 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEG--KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR-NK 187 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT--CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT-TC
T ss_pred CCCChHHHHHHHHHHHHHhcC--CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc-CC
Confidence 789999999999887655332 23444443 3333322 2334455554331 11122221 2345555555 45
Q ss_pred EEEEEeCC
Q 045120 215 ILVILANI 222 (374)
Q Consensus 215 ~LlVlDdv 222 (374)
-++|+|-.
T Consensus 188 dvvIiDtp 195 (306)
T 1vma_A 188 DVVIIDTA 195 (306)
T ss_dssp SEEEEEEC
T ss_pred CEEEEECC
Confidence 58888854
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.31 E-value=0.48 Score=38.70 Aligned_cols=17 Identities=47% Similarity=0.558 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 12 ~~GsGKsTla~~La~~l 28 (175)
T 1via_A 12 FMGSGKSTLARALAKDL 28 (175)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 88999999999998754
No 158
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.28 E-value=1.8 Score=48.28 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=55.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCch------hhHHHHHHHHHHHHhcCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSE------EAEYRRASRLYERLKNENKI 215 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~L~~~kr~ 215 (374)
+.|+||||||.++..... +.=..++|+...+..++.- ++.+|..... .+.++.+..+...++.+.--
T Consensus 1439 ~~~sGkttl~~~~~a~~~--~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1439 PESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp STTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHH--hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 889999999999887543 2335689999888888663 7788766432 23455666677777776778
Q ss_pred EEEEeCCCC
Q 045120 216 LVILANIWK 224 (374)
Q Consensus 216 LlVlDdv~~ 224 (374)
+||+|-|..
T Consensus 1512 ~vvvDsv~a 1520 (1706)
T 3cmw_A 1512 VIVVDSVAA 1520 (1706)
T ss_dssp EEEESCSTT
T ss_pred EEEEccHHh
Confidence 999998853
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.15 E-value=3.1 Score=39.62 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||++..+.....
T Consensus 108 ~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 799999999988877554
No 160
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=84.07 E-value=3.5 Score=39.19 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
.+|+||||++..+......
T Consensus 105 ~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 7899999999888776543
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.85 E-value=0.5 Score=38.73 Aligned_cols=17 Identities=53% Similarity=0.819 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 89999999999998754
No 162
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=83.84 E-value=0.5 Score=39.04 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998754
No 163
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=83.80 E-value=0.5 Score=39.62 Aligned_cols=17 Identities=24% Similarity=0.476 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||+.+....
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998754
No 164
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=83.78 E-value=0.51 Score=39.33 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+++.+.....
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 779999999999988543
No 165
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.46 E-value=6.2 Score=35.24 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH--HHHHHHHHhCcCCc----hhhHHHHHH-HHHHHHhcCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKK--IQGDIAEKLGLELS----EEAEYRRAS-RLYERLKNENK 214 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~----~~~~~~~~~-~l~~~L~~~kr 214 (374)
.+|+||||++..+.......+ ..+.++.. ....... -+..+....+...- ..++.++.. .+...... +.
T Consensus 106 ~~G~GKTT~~~~la~~~~~~~--~~v~l~~~-d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~-~~ 181 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE-AR 181 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHHTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH-TC
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CeEEEecC-CcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhC-CC
Confidence 789999999999987655332 23444443 2223222 23344455544321 123333333 33333334 45
Q ss_pred EEEEEeCC
Q 045120 215 ILVILANI 222 (374)
Q Consensus 215 ~LlVlDdv 222 (374)
=++|+|-.
T Consensus 182 D~viiDtp 189 (295)
T 1ls1_A 182 DLILVDTA 189 (295)
T ss_dssp CEEEEECC
T ss_pred CEEEEeCC
Confidence 57888864
No 166
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.39 E-value=0.95 Score=41.87 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+++.+.....
T Consensus 32 ~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 889999999999887544
No 167
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=82.88 E-value=0.61 Score=40.70 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.||+|||||+..+.....
T Consensus 22 kgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 799999999999987554
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.69 E-value=0.55 Score=39.35 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+|||||++.+.....
T Consensus 33 ~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY 50 (200)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 889999999999988654
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.67 E-value=0.59 Score=40.98 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||+.+....
T Consensus 9 ~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQET 25 (253)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhcC
Confidence 77999999999998754
No 170
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.66 E-value=0.57 Score=38.57 Aligned_cols=17 Identities=12% Similarity=0.430 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 13 psGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999998753
No 171
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=82.15 E-value=0.9 Score=39.69 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 88999999999998743
No 172
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=82.12 E-value=0.67 Score=38.06 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998744
No 173
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=82.08 E-value=1.2 Score=43.65 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=46.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCC-CHHHHHHHHHH----HhCcC----------CchhhHHH------
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTS-DIKKIQGDIAE----KLGLE----------LSEEAEYR------ 200 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~----~l~~~----------~~~~~~~~------ 200 (374)
..|+|||+|+..+.+... -+.++++-++... ...++++++-+ ..+.. ..+++...
T Consensus 229 ~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~ 304 (578)
T 3gqb_A 229 PFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIY 304 (578)
T ss_dssp CTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHH
Confidence 679999999999988542 4678888888774 34444444322 11111 11111111
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCCC
Q 045120 201 RASRLYERLKN-ENKILVILANIWK 224 (374)
Q Consensus 201 ~~~~l~~~L~~-~kr~LlVlDdv~~ 224 (374)
..-.+.+++++ ++..||++|++..
T Consensus 305 ~altiAEyfrd~G~dVLl~~Ds~tR 329 (578)
T 3gqb_A 305 VGVTIAEYFRDQGFSVALMADSTSR 329 (578)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecChHH
Confidence 12234555542 5899999999863
No 174
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=82.08 E-value=0.61 Score=37.95 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 78999999999998743
No 175
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.92 E-value=0.95 Score=43.23 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=28.3
Q ss_pred ccccccHHHHHHHHHHhhc------------------C-----CCCccHHHHHHHHHHHhh
Q 045120 122 EAFESRVSNLKSTQNALTN------------------A-----NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~------------------~-----~gGiGKTtLA~~v~~~~~ 159 (374)
..++|-+..++.|...+.. + +.|+||||+|+.+.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478888877777665521 1 889999999999998553
No 176
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.82 E-value=0.67 Score=38.96 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 88999999999998754
No 177
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=81.81 E-value=0.68 Score=38.17 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=16.4
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
+.|+||||+++.+......
T Consensus 21 ~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 8899999999999886553
No 178
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=81.73 E-value=0.73 Score=40.43 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
-||+||||+|..+.......+ + .++-|...
T Consensus 9 KGGvGKTT~a~nLA~~la~~G-~-~VlliD~D 38 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMG-K-TIMVVGCD 38 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT-C-CEEEEEEC
T ss_pred CCCCcHHHHHHHHHHHHHHCC-C-cEEEEcCC
Confidence 599999999998887655322 2 35555544
No 179
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.68 E-value=0.69 Score=38.12 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998743
No 180
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=81.64 E-value=2.9 Score=36.53 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIK 179 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 179 (374)
-||+||||+|..+..-.. ++ ..++-|+.....+..
T Consensus 36 kGGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~~~ 70 (267)
T 3k9g_A 36 KGGVGKSTSAIILATLLS-KN--NKVLLIDMDTQASIT 70 (267)
T ss_dssp SSSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCHHH
T ss_pred CCCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCCHH
Confidence 899999999999988666 43 345666665544433
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.62 E-value=0.7 Score=37.36 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 10 ARGCGMTTVGRELARAL 26 (173)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 182
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.52 E-value=0.72 Score=37.27 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 15 ~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 183
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.45 E-value=0.7 Score=38.70 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 12 ~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 789999999999988654
No 184
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=81.44 E-value=0.67 Score=38.83 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 78999999999998754
No 185
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=81.35 E-value=0.67 Score=38.29 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+|||||++.+..
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 679999999999975
No 186
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.18 E-value=0.72 Score=37.84 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998754
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=80.89 E-value=0.73 Score=38.07 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+.....
T Consensus 8 ~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CTTSSHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999988654
No 188
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=80.80 E-value=3.5 Score=39.88 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=44.7
Q ss_pred CCCccHHHHH-HHHHHHhhhcCCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCcC-------Cchh------hHHHHHHHH
Q 045120 142 NGGIGKTTLA-KEFAKQAREDKLFD-RVVFSEVSQTSD-IKKIQGDIAEKLGLE-------LSEE------AEYRRASRL 205 (374)
Q Consensus 142 ~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~-------~~~~------~~~~~~~~l 205 (374)
..|+|||+|| ..+.|... -+ .++++-+++..+ ..++.+.+...=... ..++ -.....-.+
T Consensus 171 ~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 246 (507)
T 1fx0_A 171 DRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 246 (507)
T ss_dssp SSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 7799999996 57777432 45 358888887754 444544443321110 1111 011122334
Q ss_pred HHHHhc-CCeEEEEEeCCCC
Q 045120 206 YERLKN-ENKILVILANIWK 224 (374)
Q Consensus 206 ~~~L~~-~kr~LlVlDdv~~ 224 (374)
.++++. ++..||++||+..
T Consensus 247 AEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 247 AEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHcCCcEEEEEecHHH
Confidence 444442 4899999999854
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.79 E-value=0.74 Score=37.05 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999998754
No 190
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=80.63 E-value=1.6 Score=39.08 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
-||+||||+|..+.......+ . .++-|.....
T Consensus 49 KGGvGKTT~a~nLA~~La~~G-~-~VlliD~D~~ 80 (307)
T 3end_A 49 KGGIGKSTTSSNLSAAFSILG-K-RVLQIGCDPK 80 (307)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-C-CEEEEEESSS
T ss_pred CCCccHHHHHHHHHHHHHHCC-C-eEEEEeCCCC
Confidence 899999999988877654332 2 3555655433
No 191
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=80.20 E-value=0.85 Score=37.68 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998744
No 192
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=80.10 E-value=0.79 Score=38.25 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||++.+...
T Consensus 15 p~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 15 PSGAGKTSLVRALVKA 30 (205)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhh
Confidence 7799999999999874
No 193
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.04 E-value=0.77 Score=40.36 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 12 ~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 88999999999998753
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=80.03 E-value=0.84 Score=37.80 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 20 ~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998754
No 195
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=79.95 E-value=0.94 Score=38.97 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
-||+||||+|..+......... ..++.|+..
T Consensus 13 kGGvGKTt~a~~LA~~la~~~g-~~VlliD~D 43 (245)
T 3ea0_A 13 KGGDGGSCIAANFAFALSQEPD-IHVLAVDIS 43 (245)
T ss_dssp STTSSHHHHHHHHHHHHTTSTT-CCEEEEECC
T ss_pred CCCcchHHHHHHHHHHHHhCcC-CCEEEEECC
Confidence 6999999999998876553311 235555554
No 196
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.85 E-value=0.85 Score=37.60 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||+++.+...
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 8899999999999874
No 197
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.83 E-value=0.86 Score=38.05 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998754
No 198
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=79.79 E-value=0.94 Score=39.38 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-TSDIKK 180 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~ 180 (374)
-||+||||+|..+.......+ . .++-|.... ..++..
T Consensus 11 kgGvGKTt~a~~LA~~la~~g-~-~VlliD~D~~~~~~~~ 48 (260)
T 3q9l_A 11 KGGVGKTTSSAAIATGLAQKG-K-KTVVIDFAIGLRNLDL 48 (260)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCSSCCHHH
T ss_pred CCCCcHHHHHHHHHHHHHhCC-C-cEEEEECCCCCCChhH
Confidence 699999999998877655332 2 355566554 344443
No 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.68 E-value=0.81 Score=38.18 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 78999999999998743
No 200
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.64 E-value=0.58 Score=38.30 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=11.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 13 ~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CC----CHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 88999999999998754
No 201
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.63 E-value=0.88 Score=38.42 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 77999999999997754
No 202
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=79.59 E-value=1.9 Score=38.34 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC-CCCHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ-TSDIKKIQ 182 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~ 182 (374)
-||+||||+|..+..-....+ . .++-|+... ..++...+
T Consensus 13 KGGvGKTT~a~nLA~~La~~G-~-~VlliD~D~~q~~l~~~l 52 (286)
T 2xj4_A 13 KGGAGKSTIAVHLVTALLYGG-A-KVAVIDLDLRQRTSARFF 52 (286)
T ss_dssp SSCTTHHHHHHHHHHHHHHTT-C-CEEEEECCTTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCCCHHHHh
Confidence 799999999999887655332 2 355566655 55554443
No 203
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=79.57 E-value=0.95 Score=39.70 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=20.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
-||+||||+|..+..-....+ . .++-|....
T Consensus 27 kGGvGKTT~a~nLA~~la~~G-~-~VlliD~D~ 57 (262)
T 2ph1_A 27 KGGVGKSTVTALLAVHYARQG-K-KVGILDADF 57 (262)
T ss_dssp SSCTTHHHHHHHHHHHHHHTT-C-CEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHHCC-C-eEEEEeCCC
Confidence 899999999988877654332 2 345555443
No 204
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=79.57 E-value=0.95 Score=40.30 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
-||+||||+|..+.......+ + .++-|+...
T Consensus 10 KGGvGKTT~a~nLA~~La~~G-~-rVlliD~D~ 40 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEMG-K-KVMIVGCDP 40 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECS
T ss_pred CCcCcHHHHHHHHHHHHHHCC-C-eEEEEecCC
Confidence 699999999988877654332 2 345555443
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.34 E-value=0.9 Score=37.39 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 67999999999998865
No 206
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=79.17 E-value=5.7 Score=33.88 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCCccHHHHHHHH-HHHhhhcCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCcCC----------------ch-----hhH
Q 045120 142 NGGIGKTTLAKEF-AKQAREDKLF-DRVVFSEVSQTSDIKKIQGDIAEKLGLEL----------------SE-----EAE 198 (374)
Q Consensus 142 ~gGiGKTtLA~~v-~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------------~~-----~~~ 198 (374)
.-|+||||+...+ +......+.. ...+.+......-...+.+.+...++... .. .+.
T Consensus 84 ~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tp 163 (235)
T 3llm_A 84 ATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTV 163 (235)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEH
T ss_pred CCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECH
Confidence 7799999866544 3333222222 22333333333333444455554443221 00 134
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045120 199 YRRASRLYERLKNENKILVILANIWK 224 (374)
Q Consensus 199 ~~~~~~l~~~L~~~kr~LlVlDdv~~ 224 (374)
..+.+.+...+. +--+||+|.+..
T Consensus 164 g~l~~~l~~~l~--~~~~lVlDEah~ 187 (235)
T 3llm_A 164 GVLLRKLEAGIR--GISHVIVDEIHE 187 (235)
T ss_dssp HHHHHHHHHCCT--TCCEEEECCTTS
T ss_pred HHHHHHHHhhhc--CCcEEEEECCcc
Confidence 444445544333 345899999875
No 207
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.16 E-value=0.92 Score=38.52 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 12 ~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998754
No 208
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.11 E-value=0.92 Score=38.76 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 88999999999998743
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=79.07 E-value=1.7 Score=36.71 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||+..+....
T Consensus 46 ~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 46 AIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999988764
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=79.04 E-value=0.89 Score=37.99 Aligned_cols=15 Identities=47% Similarity=0.665 Sum_probs=13.7
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+||||+++.+..
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 679999999999986
No 211
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.88 E-value=0.95 Score=37.16 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 14 ~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDF 30 (194)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998743
No 212
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.66 E-value=0.92 Score=38.56 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999997743
No 213
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.63 E-value=0.97 Score=37.33 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+++.+.....
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 679999999999988653
No 214
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=78.57 E-value=1.1 Score=38.36 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
-||+||||+|..+.......+ ..++.|+...
T Consensus 11 kgGvGKTt~a~~LA~~la~~g--~~VlliD~D~ 41 (237)
T 1g3q_A 11 KGGTGKTTVTANLSVALGDRG--RKVLAVDGDL 41 (237)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred CCCCCHHHHHHHHHHHHHhcC--CeEEEEeCCC
Confidence 699999999999887655332 2456666543
No 215
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=78.56 E-value=0.99 Score=38.38 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 13 ~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 13 APASGKGTQCELIKTKY 29 (222)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 216
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.53 E-value=0.97 Score=38.17 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999997643
No 217
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.52 E-value=1 Score=37.56 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||++.+...
T Consensus 9 PSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7899999999999874
No 218
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=78.42 E-value=0.99 Score=37.66 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||+|+.+...
T Consensus 23 ~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKD 38 (203)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8899999999999874
No 219
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=78.31 E-value=1.3 Score=36.37 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||+..+.....
T Consensus 12 ~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhH
Confidence 679999999999988654
No 220
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=78.29 E-value=1.1 Score=40.09 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 175 (374)
-||+||||+|..+..-....+ . .++-|+....
T Consensus 45 KGGvGKTT~a~nLA~~la~~G-~-rVlliD~D~q 76 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLN-L-KVLMIDKDLQ 76 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTT-C-CEEEEEECTT
T ss_pred CCCchHHHHHHHHHHHHHhCC-C-eEEEEeCCCC
Confidence 799999999988877554322 2 3555555443
No 221
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=78.28 E-value=2.3 Score=38.70 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 22 KGGvGKTTvA~~LA~~lA 39 (324)
T 3zq6_A 22 KGGVGKTTISAATALWMA 39 (324)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 799999999988876544
No 222
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=78.13 E-value=2 Score=39.55 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 34 KGGvGKTTvA~~LA~~lA 51 (349)
T 3ug7_A 34 KGGVGKTTMSAATGVYLA 51 (349)
T ss_dssp SSSTTHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 899999999988876544
No 223
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=78.13 E-value=0.96 Score=38.00 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||++.+....
T Consensus 14 ~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 14 GTASGKTTLAQALARTL 30 (211)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 67999999999998754
No 224
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.11 E-value=1 Score=37.75 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.4
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDR 166 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~ 166 (374)
+.|+||||+|+.+...... .+++.
T Consensus 18 ~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 7899999999999886543 24555
No 225
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=78.09 E-value=6.2 Score=33.97 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 16 ~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999987553
No 226
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=77.94 E-value=1 Score=38.06 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 16 psGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CTTSCHHHHHHHHHHST
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 78999999999998743
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=77.94 E-value=0.75 Score=37.54 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.2
Q ss_pred CCCccHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFA 155 (374)
Q Consensus 142 ~gGiGKTtLA~~v~ 155 (374)
..|+|||||++.++
T Consensus 17 ~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 17 SSGSGKSTFAKKHF 30 (171)
T ss_dssp CTTSCHHHHHHHHS
T ss_pred CCCCCHHHHHHHHc
Confidence 77999999999754
No 228
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=77.87 E-value=1.2 Score=37.79 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 10 kgGvGKTt~a~nLa~~la 27 (224)
T 1byi_A 10 DTEVGKTVASCALLQAAK 27 (224)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999988877554
No 229
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=77.82 E-value=0.95 Score=36.60 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.-|.|||||++.+..-.
T Consensus 41 ~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 41 DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 67999999999998854
No 230
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=77.62 E-value=1 Score=37.21 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+|||||++.+.....
T Consensus 9 psGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp SSSSSHHHHHHHHHHHCG
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 679999999999987543
No 231
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.40 E-value=1.1 Score=37.60 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=18.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDR 166 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~ 166 (374)
+.|+||||+|+.+....... +++.
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 78999999999998865432 3554
No 232
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=77.16 E-value=2.4 Score=38.80 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 24 kGGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 899999999988876544
No 233
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=77.14 E-value=2.7 Score=40.26 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.6
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 045120 142 NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~ 161 (374)
.+|+||||++..+.......
T Consensus 53 ~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 53 PAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 88999999999988865533
No 234
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=77.10 E-value=1 Score=39.06 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 35 ~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998644
No 235
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.01 E-value=1.7 Score=36.87 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
++|+||||+|..+.+..
T Consensus 66 PPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 89999999999998864
No 236
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.99 E-value=1.2 Score=37.69 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999998754
No 237
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=76.77 E-value=1.2 Score=37.73 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.48 E-value=1.2 Score=37.34 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 12 psGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999998754
No 239
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.44 E-value=12 Score=36.25 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||++..+.....
T Consensus 109 ~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 109 LQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 689999999998886554
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.38 E-value=1.6 Score=43.00 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=27.2
Q ss_pred ccccccHHHHHHHHHHhhc--------C-------CCCccHHHHHHHHHHHh
Q 045120 122 EAFESRVSNLKSTQNALTN--------A-------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 122 ~~~vGr~~~~~~i~~~L~~--------~-------~gGiGKTtLA~~v~~~~ 158 (374)
..++|.+...+.+.+.+.- + +.|+||||||+.+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4478888777776554321 1 88999999999999855
No 241
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=76.28 E-value=1 Score=37.73 Aligned_cols=16 Identities=50% Similarity=0.559 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||||+.+...
T Consensus 29 ~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKH 44 (207)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7799999999998763
No 242
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.20 E-value=1.2 Score=37.03 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+++.+....
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999998743
No 243
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.09 E-value=1.2 Score=36.27 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+++.+.....
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 789999999999987543
No 244
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=76.03 E-value=1.2 Score=38.94 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=21.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
-||+||||+|..+.......+ + .++-|+...
T Consensus 15 kGGvGKTt~a~~LA~~la~~g-~-~VlliD~D~ 45 (257)
T 1wcv_1 15 KGGVGKTTTAINLAAYLARLG-K-RVLLVDLDP 45 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHTT-C-CEEEEECCT
T ss_pred CCCchHHHHHHHHHHHHHHCC-C-CEEEEECCC
Confidence 799999999998887654332 2 355555443
No 245
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=75.92 E-value=1.3 Score=37.82 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998754
No 246
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=75.91 E-value=1.4 Score=38.39 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=21.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
-||+||||+|..+.......+ . .++.|+...
T Consensus 11 kgGvGKTt~a~~LA~~la~~g-~-~VlliD~D~ 41 (263)
T 1hyq_A 11 KGGTGKTTITANLGVALAQLG-H-DVTIVDADI 41 (263)
T ss_dssp SSCSCHHHHHHHHHHHHHHTT-C-CEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C-cEEEEECCC
Confidence 699999999998887655332 2 455665543
No 247
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.68 E-value=1.3 Score=38.00 Aligned_cols=17 Identities=41% Similarity=0.430 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 24 ~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998754
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=75.67 E-value=4.1 Score=34.13 Aligned_cols=79 Identities=16% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC---CCCHHHHHHHHHH---HhCc--CCchh-------hHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ---TSDIKKIQGDIAE---KLGL--ELSEE-------AEYRRASRLY 206 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~---~l~~--~~~~~-------~~~~~~~~l~ 206 (374)
..|.||||+|-.+.-...-.+ + .++++..-+ ......++..+.- ..+. .+... .........+
T Consensus 36 G~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~ 113 (196)
T 1g5t_A 36 GNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGK 113 (196)
T ss_dssp SSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHH
Confidence 557999999988766544222 3 344453332 2333444433310 0000 01111 1122345566
Q ss_pred HHHhcCCeEEEEEeCC
Q 045120 207 ERLKNENKILVILANI 222 (374)
Q Consensus 207 ~~L~~~kr~LlVlDdv 222 (374)
+.+..++-=|||||++
T Consensus 114 ~~l~~~~yDlvILDEi 129 (196)
T 1g5t_A 114 RMLADPLLDMVVLDEL 129 (196)
T ss_dssp HHTTCTTCSEEEEETH
T ss_pred HHHhcCCCCEEEEeCC
Confidence 6666645569999987
No 249
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=75.53 E-value=2 Score=39.09 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||||+.+..-.
T Consensus 100 psGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999987654
No 250
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=75.45 E-value=1.3 Score=37.42 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLV 50 (211)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 789999999999987554
No 251
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=75.44 E-value=2.4 Score=39.34 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
-||+||||+|..+.......+ ..++.|+.....+
T Consensus 152 KGGvGKTT~a~nLA~~La~~g--~rVlliD~D~~~~ 185 (373)
T 3fkq_A 152 CGGVGTSTVAAACAIAHANMG--KKVFYLNIEQCGT 185 (373)
T ss_dssp STTSSHHHHHHHHHHHHHHHT--CCEEEEECCTTCC
T ss_pred CCCChHHHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 899999999988877554332 2466777553333
No 252
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.37 E-value=19 Score=32.66 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCc
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQT--SDIKKIQGDIAEKLGL 191 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~ 191 (374)
..|+|||||++.+.......+ . .+.++. ... ....+-+....+.++.
T Consensus 137 ~nGaGKTTll~~Lag~l~~~~-g-~V~l~g-~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLKNHG-F-SVVIAA-SDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT-C-CEEEEE-ECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcC-C-EEEEEe-ecccccchHHHHHHHHHHcCc
Confidence 789999999999987655332 1 233333 222 2334445555666663
No 253
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.33 E-value=1.1 Score=37.40 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+||||+++.+..
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 679999999999965
No 254
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=75.18 E-value=0.98 Score=37.92 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+||||+|+.+.....
T Consensus 8 ~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 8 VDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999987654
No 255
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.15 E-value=2.1 Score=36.00 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||+..+....
T Consensus 38 ~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 38 AIGSGKTLLIERTIERI 54 (221)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999988764
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.93 E-value=2.6 Score=37.75 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=24.9
Q ss_pred CCCccHHHHHHHHHHHhhhcC-CCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDK-LFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
..|+||||||+.+.......+ .......|+...-+-.......+.
T Consensus 39 ~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 789999999999877554321 122344444443332334444443
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=74.84 E-value=1.3 Score=37.16 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+..-.
T Consensus 28 pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 77999999999998754
No 258
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=74.82 E-value=1.5 Score=38.12 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998744
No 259
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=74.78 E-value=1.4 Score=36.58 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||+|+.+...
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 7899999999999873
No 260
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.38 E-value=1.4 Score=45.50 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=30.0
Q ss_pred cccccccHHHHHHHHHHhhcC----------------------CCCccHHHHHHHHHHHhh
Q 045120 121 YEAFESRVSNLKSTQNALTNA----------------------NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 121 ~~~~vGr~~~~~~i~~~L~~~----------------------~gGiGKTtLA~~v~~~~~ 159 (374)
...++|.+..++.|.+.+... +.|+||||||+.+.+...
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 345778888888887766421 789999999999998654
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=73.93 E-value=1.5 Score=37.41 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 77999999999998744
No 262
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=73.84 E-value=1.3 Score=40.25 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=19.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
-||+||||.+..+..-....+ + .+.-|...
T Consensus 56 KGGVGKTTtavNLA~aLA~~G-k-kVllID~D 85 (314)
T 3fwy_A 56 KGGIGKSTTSSNLSAAFSILG-K-RVLQIGCD 85 (314)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-C-CEEEEEES
T ss_pred CCccCHHHHHHHHHHHHHHCC-C-eEEEEecC
Confidence 799999998877766544332 2 35555554
No 263
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=73.46 E-value=5.4 Score=33.82 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=26.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
..|+||||+++.+....... .+..+.+..-.....+.+..++++.
T Consensus 11 ~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 67999999999998876543 3433343332222234445555554
No 264
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=73.41 E-value=2.6 Score=35.61 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=17.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDR 166 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~ 166 (374)
.-|+||||+++.+.+... ..++.
T Consensus 10 ~dGsGKsTq~~~L~~~L~--~~~~v 32 (205)
T 4hlc_A 10 PEGSGKTTVINEVYHRLV--KDYDV 32 (205)
T ss_dssp CTTSCHHHHHHHHHHHHT--TTSCE
T ss_pred CCCCcHHHHHHHHHHHHH--CCCCE
Confidence 569999999999998664 34544
No 265
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=73.41 E-value=3.1 Score=38.46 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=24.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKK 180 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 180 (374)
-||+||||+|..+.......+ ..++-|+.....+...
T Consensus 10 KGGvGKTT~a~nLA~~LA~~G--~rVLlID~D~q~~~~~ 46 (361)
T 3pg5_A 10 KGGVGKTTLSTNVAHYFALQG--KRVLYVDCDPQCNATQ 46 (361)
T ss_dssp SCCHHHHHHHHHHHHHHHHTT--CCEEEEECCTTCTTHH
T ss_pred CCCCcHHHHHHHHHHHHHhCC--CcEEEEEcCCCCChhh
Confidence 699999999988877554322 2466676655544433
No 266
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.37 E-value=1.5 Score=37.97 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||++.+...
T Consensus 33 ~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 33 GTASGKSTVCEKIMEL 48 (245)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7799999999999774
No 267
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=73.15 E-value=5 Score=34.67 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFS 170 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 170 (374)
+.|+||||+++.+....... ++..+...
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 88999999999998876543 46634444
No 268
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=72.97 E-value=1.6 Score=39.03 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+||||+|+.+..
T Consensus 10 ~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 10 CPGSGKSTWAREFIA 24 (301)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999999987
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.92 E-value=2.8 Score=37.24 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKL 189 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 189 (374)
..|+|||||++.+......... ..++|++.. .+...+...+....
T Consensus 43 ~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE--ESVEETAEDLIGLH 87 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTSC-CCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc--CCHHHHHHHHHHHH
Confidence 7899999999999887654311 145666543 24445555544433
No 270
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=72.91 E-value=2.8 Score=35.97 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.6
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
+.|+||||+++.+......
T Consensus 34 ~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 8899999999999987653
No 271
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.83 E-value=1.8 Score=36.46 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+....
T Consensus 27 PSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 88999999999998753
No 272
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=72.72 E-value=1.6 Score=39.61 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+..-..
T Consensus 98 ~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 98 SVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhhcc
Confidence 779999999999987554
No 273
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.44 E-value=1.7 Score=37.17 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||.+.+....
T Consensus 24 psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 78999999999998854
No 274
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=72.35 E-value=1.7 Score=34.19 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||+..+.+..
T Consensus 11 ~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 11 AGGVGKSALTIQLIQNH 27 (166)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHhCc
Confidence 68999999999998753
No 275
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=72.29 E-value=1.7 Score=38.11 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+++.+....
T Consensus 56 ~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSL 72 (250)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 88999999999998754
No 276
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=72.18 E-value=1.8 Score=37.76 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||++.+...
T Consensus 35 ~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 35 PSGAGKGTLCKALAES 50 (252)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 8899999999999864
No 277
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=72.03 E-value=1.7 Score=37.83 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 30 ~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLL 46 (252)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 78999999999998753
No 278
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.00 E-value=1.9 Score=36.51 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|+||||+|+.+..+..
T Consensus 8 pPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHC
Confidence 789999999999988553
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=71.59 E-value=2.4 Score=34.84 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||+..+.....
T Consensus 14 ~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 679999999999987644
No 280
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=71.38 E-value=1.6 Score=40.86 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 117 KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 117 KGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 899999999988877544
No 281
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=71.25 E-value=4 Score=34.97 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAE 187 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 187 (374)
..|+||||+++.+.+.......++......-.....+.+.+++++.
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 7899999999999987654123444442322222223344444444
No 282
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=71.15 E-value=2 Score=37.12 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 17 ~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 17 PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 88999999999998754
No 283
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=71.13 E-value=1.7 Score=38.43 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=22.2
Q ss_pred CCCccHHHHHHHHHHHhhhcC--------CCCeEEEEEeCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDK--------LFDRVVFSEVSQT 175 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~--------~F~~~~wv~vs~~ 175 (374)
..|+|||||+.++........ .-..++|++....
T Consensus 38 ~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp STTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 789999999999887543210 0134667766554
No 284
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=71.09 E-value=4.1 Score=37.52 Aligned_cols=18 Identities=44% Similarity=0.625 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.||+||||+|..+.....
T Consensus 26 kGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 26 KGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 899999999988876544
No 285
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=71.08 E-value=1.9 Score=35.90 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 10 ~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 10 PSASGKSSVARRVAAAL 26 (208)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 67999999999998743
No 286
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.99 E-value=1.9 Score=35.86 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+.....
T Consensus 9 ~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCSSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhcc
Confidence 579999999999988654
No 287
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=70.89 E-value=1.9 Score=36.37 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+||||+++.+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999999865
No 288
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=70.69 E-value=2.8 Score=37.69 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=20.6
Q ss_pred HHHHHHHhhcC------CCCccHHHHHHHHHHHh
Q 045120 131 LKSTQNALTNA------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 131 ~~~i~~~L~~~------~gGiGKTtLA~~v~~~~ 158 (374)
++++.+.+... ..|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 55666666554 78999999999998 43
No 289
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=70.43 E-value=2.1 Score=35.73 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||+|+.+...
T Consensus 20 ~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 20 KIGTGKSTVCEILKNK 35 (192)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7799999999999874
No 290
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=70.22 E-value=2.1 Score=33.58 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 9 ~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 9 RPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CTTSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5799999999998764
No 291
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=70.05 E-value=2.1 Score=35.27 Aligned_cols=17 Identities=29% Similarity=0.753 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||.+.+....
T Consensus 37 ~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 37 DSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 78999999999998753
No 292
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.95 E-value=2 Score=38.82 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||+..+..-..
T Consensus 110 ~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 789999999999987655
No 293
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=69.90 E-value=4.4 Score=36.83 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 27 kGGvGKTTva~~LA~~lA 44 (329)
T 2woo_A 27 KGGVGKTTTSCSLAIQMS 44 (329)
T ss_dssp SSSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 899999999988876554
No 294
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=69.88 E-value=5.4 Score=36.73 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 26 KGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 26 KGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 899999999888766544
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=69.70 E-value=3 Score=35.24 Aligned_cols=16 Identities=50% Similarity=0.416 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 30 ~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 30 PAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CTTSSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7799999999999875
No 296
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=69.50 E-value=2.7 Score=34.71 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||++..+..+..
T Consensus 11 ~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 569999999977766544
No 297
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=69.41 E-value=9.6 Score=32.63 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHhhcC------CCCccHHHHHHHHHHHh
Q 045120 127 RVSNLKSTQNALTNA------NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 127 r~~~~~~i~~~L~~~------~gGiGKTtLA~~v~~~~ 158 (374)
|+...+.+..++... .-|.|||.+|..+....
T Consensus 95 ~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 333444444444443 77999999998887643
No 298
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=68.88 E-value=2.8 Score=39.07 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=19.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEe
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEV 172 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 172 (374)
-||+||||+|..+.......+ ..++-|+.
T Consensus 10 kGG~GKTt~a~~la~~la~~g--~~vllvd~ 38 (374)
T 3igf_A 10 KSGVARTKIAIAAAKLLASQG--KRVLLAGL 38 (374)
T ss_dssp SBHHHHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCCCcHHHHHHHHHHHHHHCC--CCeEEEeC
Confidence 699999999988876544332 13555555
No 299
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=68.73 E-value=2.2 Score=34.77 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||+..+.+..
T Consensus 29 ~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 29 AGGVGKSALTIQLIQNH 45 (190)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred cCCCCHHHHHHHHHcCC
Confidence 78999999999998753
No 300
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=68.68 E-value=2.5 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
++|+||||+|+.+..+..
T Consensus 37 pPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTCCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHC
Confidence 899999999999988553
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=68.55 E-value=2.3 Score=35.17 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||.+.+...
T Consensus 13 ~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 13 DSGVGKSNLLSRFTRN 28 (199)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 6799999999999875
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=68.24 E-value=2.5 Score=36.40 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.-|+||||+++.+....
T Consensus 10 ~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 67999999999998854
No 303
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=68.07 E-value=8.2 Score=32.62 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.9
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeE
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRV 167 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~ 167 (374)
+.|+||||+++.+....... .++..
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~-~~~v~ 38 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRER-GIEVQ 38 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTT-TCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCCcc
Confidence 77999999999998876533 35543
No 304
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=67.89 E-value=2.5 Score=33.39 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 13 ~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 13 NGAVGKSSMIQRYCKG 28 (168)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 6799999999998874
No 305
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.76 E-value=2.3 Score=34.75 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=16.1
Q ss_pred CCCccHHHHHHHHHHHhhhc
Q 045120 142 NGGIGKTTLAKEFAKQARED 161 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~ 161 (374)
..|+|||||++.+..-....
T Consensus 10 ~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 10 TSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp SCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhhc
Confidence 56999999999998765543
No 306
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=66.81 E-value=5.3 Score=39.48 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=20.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
.||+||||+|..+.......+ ..++.|+..
T Consensus 16 kGGvGKTT~a~~lA~~lA~~G--~rVLlvd~D 45 (589)
T 1ihu_A 16 KGGVGKTSISCATAIRLAEQG--KRVLLVSTD 45 (589)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCcCHHHHHHHHHHHHHHHCC--CcEEEEECC
Confidence 799999999988877554332 135555544
No 307
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=66.79 E-value=2.7 Score=38.28 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||+.+....
T Consensus 13 ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 13 PTAAGKTDLAMALADAL 29 (323)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999998743
No 308
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=66.61 E-value=2.6 Score=38.01 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||++.+..-.
T Consensus 88 ~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 88 SVAVGKSTTARVLQALL 104 (308)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999998753
No 309
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=65.84 E-value=2.4 Score=37.61 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+||||+|+.+..
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 889999999999973
No 310
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=65.75 E-value=2.4 Score=33.86 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 11 ~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 11 NPNVGKSTIFNALTGE 26 (165)
T ss_dssp STTSSHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999998763
No 311
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=65.75 E-value=2.5 Score=34.27 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 15 ~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 15 NPNVGKSTIFNALTGE 30 (188)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999874
No 312
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.73 E-value=6.3 Score=38.09 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
..|+|||||++.+....... ...+++.-...+..
T Consensus 301 pNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRA 334 (503)
T ss_dssp CTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCH
T ss_pred CCcccHHHHHHHHHHHhhhc---CCeEEEecCcccch
Confidence 77999999999998765432 33455544444443
No 313
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=65.70 E-value=2.8 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
..|+|||||++.+....... ...+.+.-...+..
T Consensus 108 ~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~ 141 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRA 141 (302)
T ss_dssp CTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCH
T ss_pred CCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccch
Confidence 78999999999998865532 23444443444444
No 314
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=65.70 E-value=2.6 Score=34.34 Aligned_cols=15 Identities=53% Similarity=0.729 Sum_probs=13.4
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.+|+|||||.+.+.+
T Consensus 10 ~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 10 NTGSGKTTLLQQLMK 24 (184)
T ss_dssp CTTSSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhc
Confidence 679999999999876
No 315
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.69 E-value=9.8 Score=36.98 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.++....
T Consensus 289 ~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 289 ATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 889999999999987654
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=65.69 E-value=2.4 Score=36.96 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 37 ~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 37 PNGAGKSTLGKILAGD 52 (250)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999873
No 317
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=65.59 E-value=2.7 Score=36.45 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 32 ~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 32 PTGAGKSVFLELIAGI 47 (240)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7799999999999863
No 318
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=65.55 E-value=2.9 Score=38.37 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||..+....
T Consensus 15 ptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKF 31 (340)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHHc
Confidence 78999999999998753
No 319
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=65.46 E-value=3.9 Score=36.67 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.6
Q ss_pred HHHHHHHhhcC------CCCccHHHHHHHHHHH
Q 045120 131 LKSTQNALTNA------NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 131 ~~~i~~~L~~~------~gGiGKTtLA~~v~~~ 157 (374)
++++.+.+... +.|+|||||.+.+...
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhccc
Confidence 45566666554 7899999999999764
No 320
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=65.37 E-value=3 Score=32.79 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 12 ~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 12 SGGVGKSALTLQFMYDE 28 (168)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCc
Confidence 67999999999988754
No 321
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.07 E-value=9.9 Score=36.93 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=12.0
Q ss_pred CCCccHHHHHHHH
Q 045120 142 NGGIGKTTLAKEF 154 (374)
Q Consensus 142 ~gGiGKTtLA~~v 154 (374)
..|+|||||++.+
T Consensus 47 ~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 47 TSGTGKTLFSIQF 59 (525)
T ss_dssp STTSSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8899999999995
No 322
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.92 E-value=17 Score=42.65 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQ 182 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 182 (374)
.||+|||+|++.+..-.. + .++-+.+++.++..+.-
T Consensus 1617 vgGsGkqSltrLaa~i~~----~-~~fqi~~~~~Y~~~~f~ 1652 (2695)
T 4akg_A 1617 ASRTGKTILTRFVAWLNG----L-KIVQPKIHRHSNLSDFD 1652 (2695)
T ss_dssp TTTSCHHHHHHHHHHHTT----C-EEECCCCCTTCCHHHHH
T ss_pred CCCCcHHHHHHHHHHHhC----C-eeEEEEeeCCCCHHHHH
Confidence 999999999999876332 1 23445678887765543
No 323
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=64.88 E-value=2.6 Score=36.36 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.7
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+-|+|||||.+.+..
T Consensus 39 ~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 39 PSGSGKSTMLNIIGC 53 (235)
T ss_dssp STTSSHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHhc
Confidence 779999999999976
No 324
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.88 E-value=2.5 Score=37.25 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 54 ~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 54 PNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999873
No 325
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=64.80 E-value=3.1 Score=33.94 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 56 ~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 56 PQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999998874
No 326
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=64.67 E-value=2.7 Score=35.94 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.7
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.-|+|||||.+.+..
T Consensus 38 ~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 38 ASGSGKSTLLYILGL 52 (224)
T ss_dssp CTTSCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc
Confidence 779999999999976
No 327
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=64.26 E-value=2.3 Score=36.27 Aligned_cols=16 Identities=50% Similarity=0.652 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 43 ~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 43 PNGIGKTTLLKTISTY 58 (214)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999999763
No 328
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=64.05 E-value=2.6 Score=36.48 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 39 ~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 39 QVGCGKSSLLSALLAE 54 (237)
T ss_dssp STTSSHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999999764
No 329
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=64.04 E-value=2.3 Score=36.89 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 40 ~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 40 ANGAGKTTTLSAIAGL 55 (240)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999763
No 330
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=64.01 E-value=3.3 Score=32.53 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 8 ~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 8 LDAAGKTTILYKLKLGE 24 (164)
T ss_dssp STTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 57999999999987653
No 331
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.93 E-value=1.9 Score=36.80 Aligned_cols=16 Identities=50% Similarity=0.682 Sum_probs=9.2
Q ss_pred CCCccHHHHHHHHH-HH
Q 045120 142 NGGIGKTTLAKEFA-KQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~-~~ 157 (374)
+.|+|||||++.+. ..
T Consensus 35 p~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 35 PSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp SCC----CHHHHHHC--
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 78999999999998 63
No 332
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=63.84 E-value=7 Score=33.51 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=13.4
Q ss_pred CCCccHHHHHHHHHHHhhh
Q 045120 142 NGGIGKTTLAKEFAKQARE 160 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~ 160 (374)
+.|+||||+++.+.+....
T Consensus 33 ~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CC---CHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 8899999999999887653
No 333
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=63.81 E-value=3.3 Score=32.57 Aligned_cols=16 Identities=38% Similarity=0.860 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 11 ~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 11 SGGVGKSALTVQFVQG 26 (167)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5799999999998874
No 334
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=63.69 E-value=2.6 Score=39.83 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 88999999999988643
No 335
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=63.61 E-value=3.4 Score=32.66 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 14 ~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 14 EGCVGKTSLVLRYCENK 30 (170)
T ss_dssp CTTSCHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHcCC
Confidence 67999999999988653
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=63.47 E-value=1.7 Score=37.25 Aligned_cols=16 Identities=50% Similarity=0.571 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+...
T Consensus 28 ~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 28 NIGSGKTTYLNHFEKY 43 (230)
T ss_dssp STTSCHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHhc
Confidence 6799999999998764
No 337
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=63.29 E-value=3.4 Score=32.54 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 11 ~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 11 EAAVGKSSIVLRFVSND 27 (170)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 57999999999988754
No 338
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=63.19 E-value=3.3 Score=34.59 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 20 ~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 20 PQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999988743
No 339
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=63.18 E-value=3.1 Score=33.99 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 25 ~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 25 LDNSGKTTIINQVKPA 40 (199)
T ss_dssp CTTSCHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999998764
No 340
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=63.18 E-value=2.7 Score=36.81 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 41 ~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 41 PNGSGKSTLINVITGF 56 (257)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999763
No 341
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=63.10 E-value=3.4 Score=33.49 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 15 ~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 15 DSQCGKTALLHVFAKDC 31 (184)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999988753
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=63.09 E-value=3.9 Score=37.16 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||++..+.....
T Consensus 113 ~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 799999999999887654
No 343
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=62.95 E-value=3.2 Score=32.83 Aligned_cols=16 Identities=44% Similarity=0.843 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 11 ~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 11 AGGVGKSSLVLRFVKG 26 (172)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHcC
Confidence 6799999999998864
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.74 E-value=3 Score=33.85 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.-|+|||||+..++-
T Consensus 34 ~NGsGKStll~ai~~ 48 (182)
T 3kta_A 34 ANGSGKSNIGDAILF 48 (182)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 779999999999875
No 345
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=62.69 E-value=1.8 Score=40.65 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=7.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
-||+||||+|..+.....
T Consensus 120 KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 120 KGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp --------CHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 899999999888876543
No 346
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=62.68 E-value=3.6 Score=32.44 Aligned_cols=17 Identities=24% Similarity=0.646 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 14 ~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 14 DTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHcCC
Confidence 67999999999988754
No 347
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=62.61 E-value=2.9 Score=38.26 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+=|+||||+++.+.....
T Consensus 15 ~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 15 VYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp STTSSHHHHHHHHHSGGG
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 559999999999987654
No 348
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=62.55 E-value=3.7 Score=32.18 Aligned_cols=17 Identities=35% Similarity=0.794 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 11 ~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 11 SGGVGKSALTVQFVTGT 27 (167)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 67999999999887643
No 349
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.46 E-value=2.8 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 58 ~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 58 PSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHHcC
Confidence 6799999999999763
No 350
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=62.37 E-value=3.6 Score=33.46 Aligned_cols=16 Identities=38% Similarity=0.198 Sum_probs=13.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||.+.+.+.
T Consensus 22 ~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 22 PGLSGKTTNLKWIYSK 37 (198)
T ss_dssp STTSSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhh
Confidence 7899999999777653
No 351
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=62.27 E-value=3.1 Score=33.14 Aligned_cols=16 Identities=50% Similarity=0.783 Sum_probs=13.8
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 12 ~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 12 DPGVGKTSLASLFAGK 27 (175)
T ss_dssp CTTSSHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHhcC
Confidence 6799999999998764
No 352
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=62.20 E-value=3.7 Score=32.81 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 16 ~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 16 DSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCc
Confidence 68999999999987743
No 353
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=61.85 E-value=3.2 Score=36.44 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 40 ~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 40 SSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7799999999999763
No 354
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=61.83 E-value=3.8 Score=32.71 Aligned_cols=17 Identities=35% Similarity=0.755 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 17 ~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 17 GGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CTTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHhCc
Confidence 68999999999988753
No 355
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=61.81 E-value=3.5 Score=36.41 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||.+.++.-.
T Consensus 10 ~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 10 QSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 57999999999998754
No 356
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=61.78 E-value=12 Score=37.30 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcC-------CCCccHHHHH-HHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 130 NLKSTQNALTNA-------NGGIGKTTLA-KEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 130 ~~~~i~~~L~~~-------~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
..+.+...|... ++|+|||+.+ ..|+.-.+ . +..+.|+...+.-...++..+.
T Consensus 194 Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~--~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 194 QKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK--Q--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH--T--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh--C--CCeEEEEcCchHHHHHHHHHHH
Confidence 344555556543 8999999854 44444332 1 2367777666655666665554
No 357
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=61.78 E-value=3.6 Score=36.14 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+-|+|||||++.+..-..
T Consensus 33 p~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp STTCSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhCC
Confidence 779999999999887543
No 358
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=61.71 E-value=3 Score=36.31 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 43 ~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 43 RSGSGKSTLTKLIQRF 58 (247)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999999763
No 359
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=61.66 E-value=8 Score=35.46 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||+..+....
T Consensus 87 ~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 88999999999987654
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=61.55 E-value=3.9 Score=32.65 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 14 ~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 14 DGASGKTSLTTCFAQE 29 (178)
T ss_dssp CTTSSHHHHHHHHHGG
T ss_pred cCCCCHHHHHHHHHhC
Confidence 6799999999998764
No 361
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=61.55 E-value=2.7 Score=37.08 Aligned_cols=16 Identities=44% Similarity=0.474 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 41 ~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 41 NTGSGKSTLLQIVAGL 56 (266)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 6799999999999763
No 362
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=61.51 E-value=3.5 Score=38.38 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||++.+...
T Consensus 177 ~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 177 PIDSGKTTLAAALLEL 192 (377)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh
Confidence 8899999999999974
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=61.46 E-value=3.8 Score=32.62 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 23 ~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 23 DMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 78999999999998754
No 364
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=61.24 E-value=3.9 Score=33.30 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.8
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 28 ~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 28 NLSSGKSALVHRYLTG 43 (184)
T ss_dssp CTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999887764
No 365
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=60.95 E-value=3.4 Score=36.62 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=13.7
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+-|+|||||++.+..
T Consensus 42 pnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 42 GNGVGKSTLFQNFNG 56 (275)
T ss_dssp CTTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHc
Confidence 779999999999976
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=60.93 E-value=3.4 Score=38.10 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.1
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+..-..
T Consensus 178 ~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 178 GESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CTTSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 679999999999987543
No 367
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=60.92 E-value=3.4 Score=36.38 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 45 ~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CTTSCHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhcC
Confidence 7799999999999763
No 368
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=60.87 E-value=6.6 Score=34.61 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
++|+|||+||..+.+.
T Consensus 112 ppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 112 PATTGKTNIAEAIAHT 127 (267)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh
Confidence 8999999999999885
No 369
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=60.86 E-value=2.8 Score=37.10 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 53 ~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 53 PNGSGKSTVAALLQNL 68 (271)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999999763
No 370
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=60.85 E-value=3.5 Score=35.36 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 42 ~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 42 STGAGKTSLLMMIMGE 57 (229)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999874
No 371
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=60.85 E-value=4.1 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.870 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 15 ~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 15 DGGVGKSSLMNRYVTN 30 (177)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 6899999999998764
No 372
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=60.75 E-value=4 Score=32.59 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 16 ~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 16 HVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CTTTTHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999998764
No 373
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=60.62 E-value=3.2 Score=36.91 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 55 ~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 55 LNGAGKTTLLNILNAY 70 (279)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 7799999999999863
No 374
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=60.54 E-value=4.1 Score=32.06 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 14 ~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 14 ESAVGKSSLVLRFVKG 29 (170)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 6799999999998864
No 375
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=60.51 E-value=4.9 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.7
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||+|...+.++
T Consensus 21 d~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 21 EQSVGKTSLITRFMYD 36 (216)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCcCHHHHHHHHHhC
Confidence 7899999999988653
No 376
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=60.43 E-value=3.6 Score=35.65 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 36 ~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 36 PSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999999763
No 377
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=60.38 E-value=3.7 Score=32.36 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=12.9
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.+|+|||||...+.+
T Consensus 10 ~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 10 APGVGKSALARIFGG 24 (166)
T ss_dssp STTSSHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHcC
Confidence 579999999998854
No 378
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=60.28 E-value=4.2 Score=33.16 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 29 ~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 29 RRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CTTSSHHHHHHHHHHSS
T ss_pred CCCCcHHHHHHHHHhCC
Confidence 78999999999887754
No 379
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=60.17 E-value=4.1 Score=33.34 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 31 ~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 31 LDNAGKTTLLHMLKND 46 (190)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999998863
No 380
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=60.14 E-value=4.2 Score=32.04 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=13.8
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 11 ~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 11 DSGVGKSCLLVRFVED 26 (170)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhC
Confidence 6799999999998764
No 381
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=60.13 E-value=4.1 Score=32.80 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 18 ~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 18 NAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 68999999999988754
No 382
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=60.08 E-value=4.1 Score=33.79 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.++.
T Consensus 38 ~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 38 DGAVGKTCLLISYTTNA 54 (204)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHhCC
Confidence 78999999998887643
No 383
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=60.02 E-value=4.2 Score=32.11 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 15 ~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 15 LDGAGKTTILYRLQVG 30 (171)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999999764
No 384
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=59.96 E-value=3.5 Score=38.17 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=12.1
Q ss_pred CCCccHHHHHHHH
Q 045120 142 NGGIGKTTLAKEF 154 (374)
Q Consensus 142 ~gGiGKTtLA~~v 154 (374)
.||+||||+++++
T Consensus 41 ~~~SGKST~~kq~ 53 (362)
T 1zcb_A 41 AGESGKSTFLKQM 53 (362)
T ss_dssp STTSSHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 8899999999886
No 385
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=59.95 E-value=3.7 Score=37.93 Aligned_cols=16 Identities=44% Similarity=0.493 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 38 psGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 38 ASGCGKTTLLRCLAGF 53 (359)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCchHHHHHHHHhcC
Confidence 7899999999999863
No 386
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=59.78 E-value=3.3 Score=36.29 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 49 ~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 49 PNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999999763
No 387
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=59.77 E-value=4 Score=37.71 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDI 178 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 178 (374)
..|+|||||++.+....... ...+.+.-...+..
T Consensus 165 ~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~ 198 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRA 198 (359)
T ss_dssp CTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCH
T ss_pred CCCChHHHHHHHHHhhcccc---CCEEEEeccccccc
Confidence 78999999999998865532 23444443444444
No 388
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=59.72 E-value=4.1 Score=34.84 Aligned_cols=17 Identities=41% Similarity=0.431 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+++.+....
T Consensus 24 ~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDF 40 (236)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 78999999999988743
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=59.71 E-value=4.3 Score=32.67 Aligned_cols=17 Identities=35% Similarity=0.813 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 26 ~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 26 DGGVGKSALTIQFFQKI 42 (183)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 78999999999998753
No 390
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.63 E-value=1.8 Score=37.86 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+||||+|+.+...
T Consensus 32 ~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 32 NIAAGKSTFVNILKQL 47 (263)
T ss_dssp STTSSHHHHHTTTGGG
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7899999999998764
No 391
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=59.58 E-value=4.4 Score=32.65 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 12 ~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 12 ADGVGKSALTIQLIQNH 28 (189)
T ss_dssp CTTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 67999999999998754
No 392
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=59.55 E-value=3.9 Score=32.34 Aligned_cols=15 Identities=47% Similarity=0.809 Sum_probs=12.9
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
..|+|||||...+.+
T Consensus 10 ~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 10 ESGVGKSTLAGTFGG 24 (169)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 679999999998853
No 393
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=59.54 E-value=2 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=11.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+||||+|+.+....
T Consensus 13 ~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CC---CCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999998743
No 394
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=59.50 E-value=3.7 Score=33.32 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 31 ~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 31 RSNVGKSSLLNALFNRK 47 (195)
T ss_dssp BTTSSHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHcCc
Confidence 78999999999988753
No 395
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.50 E-value=4.5 Score=36.62 Aligned_cols=16 Identities=44% Similarity=0.422 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||||..+...
T Consensus 18 ptgsGKt~la~~La~~ 33 (316)
T 3foz_A 18 PTASGKTALAIELRKI 33 (316)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHh
Confidence 7899999999999874
No 396
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=59.46 E-value=3.5 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 9 ~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 9 RSNVGKSTLIYRLTGK 24 (190)
T ss_dssp BTTSSHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhCc
Confidence 5799999999998764
No 397
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=59.39 E-value=3.5 Score=33.04 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 15 ~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 15 DARSGKSSLIHRFLTG 30 (178)
T ss_dssp CGGGCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 6799999999998774
No 398
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=59.28 E-value=4.3 Score=39.45 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 403 lsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TCCSCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 679999999999998764
No 399
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=59.24 E-value=4.5 Score=32.36 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 20 ~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 20 DVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp CTTSCHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHcCC
Confidence 68999999999988753
No 400
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=59.20 E-value=4.7 Score=32.85 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 31 ~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 31 NSSVGKTSFLFRYADDT 47 (191)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhcCC
Confidence 78999999999988754
No 401
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=59.19 E-value=4.4 Score=32.52 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 26 ~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 26 SGGVGKSALTLQFMYDE 42 (187)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhhCC
Confidence 68999999999988754
No 402
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=59.17 E-value=3.9 Score=36.77 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+...
T Consensus 18 ~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 18 KPNVGKSTLLNNLLGT 33 (308)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 6899999999998774
No 403
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=59.16 E-value=11 Score=31.93 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+++.+.+...
T Consensus 13 ~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 779999999999998664
No 404
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=59.15 E-value=3.8 Score=35.94 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||++.+..-
T Consensus 54 ~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 54 HTGSGKSTIAKLLYRF 69 (260)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhcc
Confidence 6799999999999863
No 405
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=59.14 E-value=4.2 Score=32.83 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 19 ~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 19 DSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999988743
No 406
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=58.97 E-value=3.9 Score=35.62 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 34 ~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 34 PNGAGKSTLLARMAGM 49 (249)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 6799999999999763
No 407
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=58.89 E-value=3.8 Score=33.36 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 31 RSNVGKSSFINSLINR 46 (195)
T ss_dssp BTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999998764
No 408
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=58.66 E-value=4 Score=36.66 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||.+.++..
T Consensus 26 ~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 26 ESGLGKSTLINSLFLT 41 (301)
T ss_dssp ETTSSHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999998753
No 409
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=58.37 E-value=4.5 Score=36.66 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||||..+...
T Consensus 11 ptgsGKt~la~~La~~ 26 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHh
Confidence 7799999999999863
No 410
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=58.31 E-value=4.7 Score=32.29 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 16 ~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 16 DGAVGKTCLLISYTSN 31 (182)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6899999999988764
No 411
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=58.13 E-value=4.2 Score=32.69 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+...
T Consensus 12 ~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 12 RPNAGKSSLLNALAGR 27 (172)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999864
No 412
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=58.10 E-value=4.7 Score=32.35 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 13 ~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 13 DGAVGKTCLLISYTTNA 29 (186)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 67999999999987643
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=58.08 E-value=4.8 Score=32.97 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 36 ~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 36 RAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 78999999999988753
No 414
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=58.07 E-value=4.1 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 39 ~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 39 QNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CSSSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999874
No 415
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=58.07 E-value=3.7 Score=37.49 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=13.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+=|+||||+++.+.....
T Consensus 12 ~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 12 PHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CTTSSHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 559999999999976443
No 416
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=57.95 E-value=4.8 Score=32.01 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 22 ~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 22 EQSVGKTSLITRFMYD 37 (179)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 6899999999998764
No 417
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=57.94 E-value=4 Score=33.54 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||.+.+.+.
T Consensus 28 ~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 28 LRRSGKSSIQKVVFHK 43 (196)
T ss_dssp STTSSHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 7899999999877663
No 418
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=57.85 E-value=4.3 Score=37.49 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 49 pnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 49 PSGSGKTTILRLIAGL 64 (355)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 7899999999999763
No 419
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=57.84 E-value=2.4 Score=42.17 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=24.5
Q ss_pred cccccHHHHHHHHHHhhc---------------C-----CCCccHHHHHHHHHHH
Q 045120 123 AFESRVSNLKSTQNALTN---------------A-----NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 123 ~~vGr~~~~~~i~~~L~~---------------~-----~gGiGKTtLA~~v~~~ 157 (374)
.++|.+..++.+.-.|.. + ..|+|||+||+.+.+.
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 467777766655444331 2 7799999999999764
No 420
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=57.82 E-value=15 Score=36.54 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIA 186 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 186 (374)
++|.||||++..+..... ..-...+.++.........+...+.
T Consensus 203 ppGTGKT~~~~~~i~~l~--~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHLA--RQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CTTSCHHHHHHHHHHHHH--TSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--HcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 889999998877665433 1123467777666655555555543
No 421
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=57.82 E-value=4.6 Score=32.38 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 14 ~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 14 YRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred cCCCCHHHHHHHHHcCC
Confidence 68999999999988643
No 422
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=57.72 E-value=4.7 Score=33.49 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 15 ~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 15 LCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999988754
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=57.61 E-value=4.9 Score=32.10 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 18 ~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 18 DSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHhCC
Confidence 67999999999987744
No 424
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=57.53 E-value=4.9 Score=33.71 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+||||+++.+...
T Consensus 11 ~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 11 PAAAGKSTIAKRVASE 26 (219)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 7799999999998764
No 425
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=57.22 E-value=4.7 Score=36.37 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+|||||++.+..-.
T Consensus 134 psGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhhhc
Confidence 77999999999998744
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=56.93 E-value=5 Score=33.41 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 36 ~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 36 DSQCGKTALLHVFAKDC 52 (205)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999998753
No 427
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=56.93 E-value=5.1 Score=32.95 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 16 ~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 16 DSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHcCC
Confidence 68999999999987753
No 428
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=56.86 E-value=3.7 Score=38.16 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+=|+||||+++.+.....
T Consensus 57 ~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 57 PHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp STTSSHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 669999999999987543
No 429
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=56.86 E-value=4.6 Score=37.37 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 37 pnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 37 PSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCchHHHHHHHHhcC
Confidence 7899999999999763
No 430
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=56.76 E-value=4.6 Score=37.36 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 37 pnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 37 PSGCGKTTTLLMLAGI 52 (359)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCchHHHHHHHHHCC
Confidence 7899999999999763
No 431
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=56.73 E-value=4.9 Score=32.99 Aligned_cols=15 Identities=53% Similarity=0.804 Sum_probs=13.2
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.+|+|||||...+.+
T Consensus 14 ~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 14 EQGVGKSTLANIFAG 28 (192)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 689999999998875
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=56.72 E-value=5.1 Score=32.60 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 33 ~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 33 ESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 68999999999988743
No 433
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=56.66 E-value=4.4 Score=33.47 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=13.3
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.+|+|||||...+.+
T Consensus 33 ~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 33 LDNAGKTTLLHMLKD 47 (198)
T ss_dssp ETTSSHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhc
Confidence 789999999998865
No 434
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=56.59 E-value=4.9 Score=33.36 Aligned_cols=16 Identities=44% Similarity=0.856 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 34 ~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 34 NAGVGKTCLVRRFTQG 49 (201)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhC
Confidence 7899999999998764
No 435
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=56.58 E-value=5.1 Score=32.86 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 22 ~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 22 SGGVGKSALTLQFMYDE 38 (206)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 68999999999987654
No 436
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=56.53 E-value=4.6 Score=37.52 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 37 pnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 37 PSGCGKTTTLRMIAGL 52 (372)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHcC
Confidence 7899999999999863
No 437
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=56.48 E-value=4.7 Score=37.46 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 45 pnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 45 PSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCChHHHHHHHHHcC
Confidence 7899999999999763
No 438
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=56.47 E-value=4.6 Score=35.62 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
.||+||||+|..+.......+ ..++.|+..
T Consensus 91 kgG~GKTt~a~nLA~~lA~~G--~rVLLID~D 120 (271)
T 3bfv_A 91 APGAGKSTIAANLAVAYAQAG--YKTLIVDGD 120 (271)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCCcHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 799999999988877654322 245666554
No 439
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=56.44 E-value=4.6 Score=35.53 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 38 ~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 38 PNGSGKTTLLRAISGL 53 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6799999999999763
No 440
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=56.42 E-value=5.2 Score=32.94 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 32 ~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 32 YRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHhCC
Confidence 78999999999988754
No 441
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=56.37 E-value=5.3 Score=32.47 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 15 ~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 15 ESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp CTTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHhCc
Confidence 67999999999998753
No 442
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=56.36 E-value=5 Score=36.87 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||.+.+.+...
T Consensus 79 ~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 79 GSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCCC
Confidence 779999999999999654
No 443
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=56.35 E-value=5 Score=32.81 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 34 ~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 34 SRGVGKTSLMERFTDDT 50 (192)
T ss_dssp STTSSHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999987543
No 444
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=56.35 E-value=4.7 Score=37.56 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 37 psGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 37 PSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCchHHHHHHHHHcC
Confidence 7899999999999763
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=56.28 E-value=4.5 Score=37.03 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+-|+||||||..+...
T Consensus 48 PTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAH 63 (339)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8899999999999863
No 446
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=56.25 E-value=4.8 Score=32.08 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 17 ~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 17 DSGVGKSSLLLRFADN 32 (181)
T ss_dssp CTTSCHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999998764
No 447
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.13 E-value=4.3 Score=34.20 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+||||||..+...
T Consensus 42 psGsGKStLA~~La~~ 57 (205)
T 2qmh_A 42 DSGVGKSETALELVQR 57 (205)
T ss_dssp CCTTTTHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 8899999999999763
No 448
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=56.13 E-value=4.7 Score=32.62 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=13.9
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 24 ~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 24 LDNAGKTTLLKQLASE 39 (181)
T ss_dssp STTSSHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999998764
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=56.12 E-value=5.5 Score=32.34 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 24 ~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 24 DSGVGKSCLLLRFADDT 40 (196)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHcCC
Confidence 78999999999998754
No 450
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=55.91 E-value=3.9 Score=36.99 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+-|+|||||.+.+...
T Consensus 12 ~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 12 FLGAGKTTLLRHILNE 27 (318)
T ss_dssp SSSSSCHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhh
Confidence 6799999999999874
No 451
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=55.90 E-value=8.1 Score=35.65 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||.+.+...
T Consensus 223 ~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 223 QSGVGKSSLLNALLGL 238 (358)
T ss_dssp CTTSSHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHhcc
Confidence 7899999999999864
No 452
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=55.86 E-value=4.1 Score=37.50 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 34 pnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 34 PTGAGKTLFLELIAGF 49 (348)
T ss_dssp CCTHHHHHHHHHHHTS
T ss_pred CCCccHHHHHHHHHcC
Confidence 7899999999999863
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=55.84 E-value=5.5 Score=32.50 Aligned_cols=17 Identities=24% Similarity=0.644 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 31 ~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 31 DTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp CTTSSHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 78999999999998754
No 454
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=55.81 E-value=5.4 Score=32.47 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 29 ~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 29 DTGVGKSCLLLQFTDK 44 (191)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 7899999999998764
No 455
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.74 E-value=23 Score=42.14 Aligned_cols=69 Identities=20% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
.||+||++|++.+..-.. + .++-+.+++.++..+.-.++-. .+++.=..+++..++|+|
T Consensus 1654 vgGSGkqSLtrLAa~i~~----~-~vfqi~i~k~Y~~~~f~eDLk~----------------l~~~aG~~~~~~vFL~tD 1712 (3245)
T 3vkg_A 1654 VSGGGKSVLSRFVAWMNG----L-SIYTIKVNNNYKSSDFDDDLRM----------------LLKRAGCKEEKICFIFDE 1712 (3245)
T ss_dssp STTSSHHHHHHHHHHHTT----C-EEECCC----CCHHHHHHHHHH----------------HHHHHHTSCCCEEEEEEG
T ss_pred CCCCcHHHHHHHHHHHhC----C-eeEEEeeeCCCCHHHHHHHHHH----------------HHHHHhcCCCCEEEEEec
Confidence 999999999999876332 2 2344677788776554332211 111111123788888888
Q ss_pred CC--Cccccccc
Q 045120 222 IW--KLLDLETV 231 (374)
Q Consensus 222 v~--~~~~~~~l 231 (374)
-. ++..++.+
T Consensus 1713 ~qi~~e~FLE~I 1724 (3245)
T 3vkg_A 1713 SNVLESSFLERM 1724 (3245)
T ss_dssp GGCSSTHHHHHH
T ss_pred cccccHHHHHHH
Confidence 54 34344444
No 456
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=55.69 E-value=5.3 Score=38.27 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+++.+.....
T Consensus 47 lpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 889999999999987654
No 457
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=55.67 E-value=5.5 Score=32.38 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 30 ~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 30 LQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 78999999999998743
No 458
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=55.56 E-value=36 Score=30.93 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+...
T Consensus 175 ~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 175 HPNVGKSTLLKALTTA 190 (357)
T ss_dssp STTSSHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 7899999999998764
No 459
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=55.49 E-value=50 Score=29.60 Aligned_cols=139 Identities=9% Similarity=-0.057 Sum_probs=72.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCCHHHHHHHHHHHhCcCCchhhHHHHHHHHHHHHhcCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSDIKKIQGDIAEKLGLELSEEAEYRRASRLYERLKNENKILVILAN 221 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~L~~~kr~LlVlDd 221 (374)
.-|.||++.+..+.+..... .|+....+.+....++.++...+-. .-+-+ ++-++|+|+
T Consensus 26 ~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~plf~-~~kvvii~~ 84 (343)
T 1jr3_D 26 NDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSLFA-SRQTLLLLL 84 (343)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHHCC-SCEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCCcc-CCeEEEEEC
Confidence 66889999988887754322 3543222233334455444333211 01123 567788888
Q ss_pred CCC-c--ccccccc---CcCCCC-------Cc------chhHhhhhcCCCCceecCCCCHHHHHHHHHHhcCCCCCCcch
Q 045120 222 IWK-L--LDLETVK---IPFRND-------SR------DNNVVLLSMGSKDNFLIANITEEEAWRLFKIMNGDDVENCKF 282 (374)
Q Consensus 222 v~~-~--~~~~~l~---~~~~~~-------TR------~~~va~~~~~~~~~~~l~~L~~~~s~~Lf~~~a~~~~~~~~l 282 (374)
+.. . ..++.+. ...|.+ |. ...+..........++..+++.++-...+.+.+...... --
T Consensus 85 ~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~-i~ 163 (343)
T 1jr3_D 85 PENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLE-LD 163 (343)
T ss_dssp CSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCE-EC
T ss_pred CCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCC-CC
Confidence 754 2 2222221 112222 21 223322222333478889999998887777766322111 11
Q ss_pred HHHHHHHHHHccCCchHHHHH
Q 045120 283 KSTAINVAKACGAGLFCTLTT 303 (374)
Q Consensus 283 ~~~~~~I~~~c~~GlPLai~~ 303 (374)
.+....+++.+ +|-+..+..
T Consensus 164 ~~a~~~l~~~~-~gdl~~~~~ 183 (343)
T 1jr3_D 164 DAANQVLCYCY-EGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHSS-TTCHHHHHH
T ss_pred HHHHHHHHHHh-chHHHHHHH
Confidence 34566788888 777766644
No 460
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=55.26 E-value=5.6 Score=32.43 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 31 ~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 31 DGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 68999999999988754
No 461
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=55.24 E-value=4.4 Score=36.20 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.-|+|||||.+.+..-
T Consensus 72 ~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 72 STGAGKTSLLMMIMGE 87 (290)
T ss_dssp STTSSHHHHHHHHTTS
T ss_pred CCCCcHHHHHHHHhcC
Confidence 6799999999999764
No 462
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=55.22 E-value=4.1 Score=33.58 Aligned_cols=14 Identities=50% Similarity=0.892 Sum_probs=12.6
Q ss_pred CCCccHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFA 155 (374)
Q Consensus 142 ~gGiGKTtLA~~v~ 155 (374)
.+|+|||||...+.
T Consensus 31 ~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 31 ESGVGKSTLAGTFG 44 (195)
T ss_dssp STTSSHHHHHHHTC
T ss_pred CCCCCHHHHHHHHH
Confidence 78999999999884
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=55.21 E-value=3.9 Score=38.84 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||++..+.....
T Consensus 107 ~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CSSSSTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 789999999988877654
No 464
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=55.20 E-value=4.2 Score=39.94 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=15.9
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+|||||++.+.....
T Consensus 377 ~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 377 LSGAGKSTLARALAARLM 394 (552)
T ss_dssp SSCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhhc
Confidence 789999999999988654
No 465
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=55.00 E-value=5.8 Score=32.32 Aligned_cols=16 Identities=44% Similarity=0.843 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 16 AGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHcC
Confidence 6899999999998774
No 466
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=54.72 E-value=5.9 Score=32.12 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 28 ~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 28 DSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CTTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 78999999999987643
No 467
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.69 E-value=5.9 Score=32.60 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.7
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
..|+||||||..+..
T Consensus 24 ~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 24 EANIGKSELSLALID 38 (181)
T ss_dssp SSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 789999999999876
No 468
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=54.40 E-value=5.7 Score=32.22 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 30 ~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 30 NSSVGKTSFLFRYADDS 46 (189)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 68999999999988754
No 469
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=54.40 E-value=5.9 Score=32.09 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 23 ~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 23 ESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 78999999999998753
No 470
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=54.34 E-value=5 Score=35.91 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVS 173 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 173 (374)
.||+||||+|..+..-....+ ..++.|+..
T Consensus 113 kgG~GKTtva~nLA~~lA~~G--~rVLLID~D 142 (299)
T 3cio_A 113 TPDSGKTFVSSTLAAVIAQSD--QKVLFIDAD 142 (299)
T ss_dssp SSSSCHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCCChHHHHHHHHHHHHhCC--CcEEEEECC
Confidence 799999999988877654322 235666544
No 471
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=54.21 E-value=5.3 Score=32.83 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 16 ~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 16 NSSVGKTSFLFRYADDS 32 (203)
T ss_dssp STTSSHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 67999999999987743
No 472
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=53.91 E-value=6.2 Score=32.12 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 26 ~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 26 DGAVGKTCLLMSYAND 41 (194)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999999875
No 473
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=53.82 E-value=5.8 Score=32.68 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=14.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 16 ~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 16 NSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp STTSSHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999987743
No 474
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=53.80 E-value=5.9 Score=38.58 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.7
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 43 lpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 899999999999987553
No 475
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=53.70 E-value=6.1 Score=32.43 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=14.1
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 36 ~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 36 DAAVGKSSFLMRLCKN 51 (199)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhC
Confidence 7899999999998764
No 476
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=53.66 E-value=5.1 Score=32.88 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 28 ~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 28 DGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp STTSSHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 78999999999987643
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=53.41 E-value=6.3 Score=32.62 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 33 ~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 33 DGACGKTCLLIVFSKD 48 (207)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 7899999999998774
No 478
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=53.40 E-value=5.5 Score=37.24 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.8
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
+.|+|||||.+.+..
T Consensus 55 psGsGKSTLLr~iaG 69 (390)
T 3gd7_A 55 RTGSGKSTLLSAFLR 69 (390)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCChHHHHHHHHhC
Confidence 789999999999976
No 479
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=53.40 E-value=5.4 Score=32.14 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 29 ~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 29 LDNAGKTTILYQFSMN 44 (181)
T ss_dssp ETTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6799999999998764
No 480
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=53.20 E-value=5.2 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.655 Sum_probs=13.5
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 33 ~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 33 SAGTGKSCLLHQFIEN 48 (200)
T ss_dssp STTSSHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHhC
Confidence 7899999999998754
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=52.53 E-value=6.5 Score=32.56 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=14.4
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 17 ~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 17 DGAVGKTCMLICYTSNK 33 (212)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999987643
No 482
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=52.46 E-value=6 Score=36.63 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
..|+|||||.+.+..
T Consensus 62 pnGaGKSTLlr~i~G 76 (366)
T 3tui_C 62 ASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCchHHHHHHHHhc
Confidence 779999999999976
No 483
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=52.45 E-value=7.5 Score=34.56 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQ 174 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 174 (374)
.||+||||+|..+..-....+ ..++.|+..-
T Consensus 101 kgG~GKTtva~nLA~~lA~~G--~rVLLID~D~ 131 (286)
T 3la6_A 101 SPSIGMTFVCANLAAVISQTN--KRVLLIDCDM 131 (286)
T ss_dssp SSSSSHHHHHHHHHHHHHTTT--CCEEEEECCT
T ss_pred CCCCcHHHHHHHHHHHHHhCC--CCEEEEeccC
Confidence 899999999988877654322 2456665543
No 484
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=52.44 E-value=6.2 Score=37.52 Aligned_cols=18 Identities=33% Similarity=0.590 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
..|+|||||++.+.+...
T Consensus 165 ~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 165 GSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcccC
Confidence 889999999999998653
No 485
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=52.44 E-value=5.6 Score=38.08 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.-|+|||||++.+.+-.
T Consensus 146 pnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 146 GSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp STTSSHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCcc
Confidence 77999999999998743
No 486
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=52.44 E-value=11 Score=37.27 Aligned_cols=18 Identities=39% Similarity=0.470 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
.+|+||||++..+.....
T Consensus 212 ~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 212 GPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 889999999999887654
No 487
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=52.24 E-value=5.7 Score=32.12 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 24 ~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 24 LDNAGKTTILYQFSMN 39 (187)
T ss_dssp STTSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhcC
Confidence 7899999999998853
No 488
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=52.18 E-value=5.6 Score=33.23 Aligned_cols=16 Identities=50% Similarity=0.760 Sum_probs=13.6
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
.+|+|||||...+.+.
T Consensus 42 ~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 42 DGGCGKTSLLMVFADG 57 (214)
T ss_dssp CTTSSHHHHHHHHHC-
T ss_pred cCCCCHHHHHHHHHcC
Confidence 7899999999998764
No 489
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=52.06 E-value=6.8 Score=32.29 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=14.0
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
..|+|||||...+.+.
T Consensus 37 ~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 37 DASVGKTCVVQRFKTG 52 (201)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhhC
Confidence 7899999999998764
No 490
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=51.79 E-value=5.1 Score=32.35 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 26 ~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 26 LDNAGKTTILKKFNGED 42 (186)
T ss_dssp STTSSHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 77999999999987654
No 491
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=51.75 E-value=5.7 Score=36.66 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||++.+....
T Consensus 183 ~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 183 ETGSGKTTLMKALMQEI 199 (361)
T ss_dssp SSSSCHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 77999999999998743
No 492
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=51.63 E-value=4.1 Score=37.60 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=14.2
Q ss_pred CCCccHHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAKQ 157 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~ 157 (374)
+.|+|||||.+.+..-
T Consensus 39 pnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 39 PSGAGKTTFMRIIAGL 54 (353)
T ss_dssp SCHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 7899999999999763
No 493
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=51.41 E-value=6.7 Score=32.26 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.6
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
..|+|||||...+.+..
T Consensus 33 ~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 33 DGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHhCc
Confidence 68999999999988743
No 494
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=51.27 E-value=6.6 Score=32.39 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=19.2
Q ss_pred CCCccHHHHHHHHHHHhhhcCCCCeEEEEEeCCCCC
Q 045120 142 NGGIGKTTLAKEFAKQAREDKLFDRVVFSEVSQTSD 177 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 177 (374)
.+|+||||+|.++... -..++++.-+..++
T Consensus 7 g~~SGKS~~A~~la~~------~~~~~yiaT~~~~d 36 (180)
T 1c9k_A 7 GARSGKSRHAEALIGD------APQVLYIATSQILD 36 (180)
T ss_dssp CTTSSHHHHHHHHHCS------CSSEEEEECCCC--
T ss_pred CCCCcHHHHHHHHHhc------CCCeEEEecCCCCC
Confidence 5799999999998753 12356665544443
No 495
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=51.24 E-value=6.7 Score=39.11 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.3
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||+|+.+....
T Consensus 60 lsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYL 76 (630)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 88999999999998864
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=51.13 E-value=7.1 Score=36.68 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
+.|+||||||..+....
T Consensus 10 ptgsGKttla~~La~~~ 26 (409)
T 3eph_A 10 TTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHC
Confidence 67999999999998743
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=51.09 E-value=6.5 Score=33.12 Aligned_cols=15 Identities=53% Similarity=0.804 Sum_probs=13.1
Q ss_pred CCCccHHHHHHHHHH
Q 045120 142 NGGIGKTTLAKEFAK 156 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~ 156 (374)
.+|+|||||...+..
T Consensus 45 ~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 45 EQGVGKSTLANIFAG 59 (211)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 789999999998864
No 498
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=51.03 E-value=7.1 Score=32.64 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.7
Q ss_pred CCCccHHHHHHHHHHHh
Q 045120 142 NGGIGKTTLAKEFAKQA 158 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~ 158 (374)
.+|+|||||...+.+..
T Consensus 35 ~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 35 DVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp STTSSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 78999999999987753
No 499
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=50.97 E-value=6.8 Score=38.65 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.8
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+||||+|+.+.....
T Consensus 404 lsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTLN 421 (573)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 889999999999988654
No 500
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=50.96 E-value=6.8 Score=36.13 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHHHhh
Q 045120 142 NGGIGKTTLAKEFAKQAR 159 (374)
Q Consensus 142 ~gGiGKTtLA~~v~~~~~ 159 (374)
+.|+|||||.+.+.....
T Consensus 131 ptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 131 PTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhccc
Confidence 779999999999877543
Done!