BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045121
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C0G0|ZN407_HUMAN Zinc finger protein 407 OS=Homo sapiens GN=ZNF407 PE=1 SV=2
Length = 2248
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 1 MDWSCALCQVSTTSKRDLDEHLHGKKHK 28
M + C C S+ S+RDLDEHLH +H+
Sbjct: 555 MKFYCRTCDFSSMSRRDLDEHLHSNQHQ 582
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNG 55
+ C LC V+T ++ LD HL G+KH +D +++R ATRK ++ ++G
Sbjct: 16 FRCCLCDVTTANRPSLDAHLKGRKH----RDLVQLR--ATRKAQGLRSVFVSG 62
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNG 55
+ C LC V+T ++ LD HL G+KH +D +++R ATRK ++ ++G
Sbjct: 16 FRCCLCDVTTANRPSLDAHLKGRKH----RDLVQLR--ATRKAQGLRSVFVSG 62
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase
OS=Ailuropoda melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 34.7 bits (78), Expect = 0.50, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNG 55
+ C LC V+T ++ LD HL G+KH + +E+R ATRK ++ ++G
Sbjct: 16 FRCCLCHVTTANRPSLDAHLGGRKH----RHLVELR--ATRKAQGLRSVFVSG 62
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos
taurus GN=TUT1 PE=2 SV=1
Length = 871
Score = 33.9 bits (76), Expect = 0.72, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 3 WSCALCQVSTTSKRDLDEHLHGKKHKARKKDYLEMRRCATRKWTVVKMSILNG 55
+ C LC ++T ++ LD HL G+KH + +E+R ATRK ++ ++G
Sbjct: 16 FRCCLCHITTANQPSLDAHLGGRKH----RHLVELR--ATRKAQGLRSVFVSG 62
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 3 WSCALCQVSTTSKRDLDEHLHGKKHK 28
+ C LC V+T ++ LD HL G+KH+
Sbjct: 16 FRCCLCHVTTANRPSLDAHLGGRKHR 41
>sp|O14338|YB33_SCHPO Uncharacterized serine-rich protein C2F12.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC2F12.03c PE=1 SV=1
Length = 891
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 148 SAVVMEGHKRGKKHMARSNGSRKNNEAVPLTTPTTIVTPSEPTE 191
++VV++GHK+ + + ++K +++ TP V SEPTE
Sbjct: 42 TSVVVDGHKKPRSESRKKYDAKKQHQSSHFATPVKGVESSEPTE 85
>sp|P31927|SPSA_MAIZE Sucrose-phosphate synthase OS=Zea mays GN=SPS PE=1 SV=1
Length = 1068
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 145 GTHSAVVMEG-HKRGKKHMARSNGSRKNNEAVPLTTPTTIVTPSE 188
G H V++ G ++G + + RS GS K ++ VP TP T E
Sbjct: 1004 GLHKTVIVRGVTEKGSEALVRSPGSYKRDDVVPSETPLAAYTTGE 1048
>sp|Q66K41|Z385C_HUMAN Zinc finger protein 385C OS=Homo sapiens GN=ZNF385C PE=2 SV=2
Length = 422
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 3 WSCALCQVSTTSKRDLDEHLHGKKHKAR 30
+ CALCQ+ S+ L +H+ ++HK R
Sbjct: 290 FHCALCQLQVNSETQLKQHMSSRRHKDR 317
>sp|A2A5E6|Z385C_MOUSE Zinc finger protein 385C OS=Mus musculus GN=Znf385c PE=2 SV=1
Length = 429
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 2 DWSCALCQVSTTSKRDLDEHLHGKKHKAR 30
+ CALCQ+ S+ L +H+ ++HK R
Sbjct: 296 PFHCALCQLHVNSETQLKQHMSSRRHKDR 324
>sp|Q8CMM5|FTSK_STAES DNA translocase FtsK OS=Staphylococcus epidermidis (strain ATCC
12228) GN=ftsK PE=3 SV=1
Length = 797
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 57 NWSSEDVHYLIFNNVKAA--HYSSSLVKPRQQKNVGGEEDSENKNEELPKKK 106
N DV +F+N+K++ H S S+ + R+Q + EE ++ K ++ +KK
Sbjct: 178 NLRHRDVTKSLFDNLKSSSNHASESIKQKREQNKIKKEEKAQLKEAKIERKK 229
>sp|Q5HPR5|FTSK_STAEQ DNA translocase FtsK OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=ftsK PE=3 SV=1
Length = 797
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 57 NWSSEDVHYLIFNNVKAA--HYSSSLVKPRQQKNVGGEEDSENKNEELPKKK 106
N DV +F+N+K++ H S S+ + R+Q + EE ++ K ++ +KK
Sbjct: 178 NLRHRDVTKSLFDNLKSSSNHASESIKQKREQNKIKKEEKAQLKEAKIERKK 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,463,250
Number of Sequences: 539616
Number of extensions: 3353432
Number of successful extensions: 8018
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7973
Number of HSP's gapped (non-prelim): 60
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)