Your job contains 1 sequence.
>045123
MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI
DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK
FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT
LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045123
(219 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 506 5.5e-47 1
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 471 9.1e-45 1
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 471 1.0e-43 1
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 471 3.1e-43 1
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 471 3.6e-43 1
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 471 3.6e-43 1
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 471 3.6e-43 1
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 471 3.6e-43 1
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 471 3.6e-43 1
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 457 1.1e-41 1
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 455 1.7e-41 1
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 445 1.8e-40 1
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 429 8.8e-39 1
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 429 8.8e-39 1
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 413 4.9e-37 1
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 413 4.9e-37 1
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 403 5.2e-36 1
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 398 1.8e-35 1
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 377 8.3e-34 2
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 235 3.1e-18 1
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 229 1.3e-17 1
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 229 2.4e-17 1
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 229 2.4e-17 1
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 221 9.8e-17 1
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 214 5.4e-16 1
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 203 1.0e-15 2
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 202 1.0e-14 1
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 201 1.2e-14 1
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 201 1.2e-14 1
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 199 2.0e-14 1
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 198 2.6e-14 1
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 198 2.6e-14 1
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 198 2.6e-14 1
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 196 4.0e-14 1
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 186 6.2e-14 2
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 180 9.5e-14 2
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 192 1.1e-13 1
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 191 1.4e-13 1
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 176 3.4e-13 2
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 177 3.9e-13 2
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 186 5.9e-13 1
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 181 2.1e-12 1
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 163 5.6e-12 2
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 167 5.8e-12 2
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 176 7.1e-12 1
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 170 3.2e-11 1
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 164 1.3e-10 1
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 164 1.4e-10 1
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 164 1.4e-10 1
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 164 1.4e-10 1
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 161 2.9e-10 1
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 161 2.9e-10 1
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 160 7.5e-10 1
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 156 6.9e-09 1
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 155 1.0e-08 1
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 146 1.3e-07 1
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 506 (183.2 bits), Expect = 5.5e-47, P = 5.5e-47
Identities = 103/216 (47%), Positives = 137/216 (63%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F S ++ KV+ VQF ILSPDEIR MSV ++H +T E G P AGGL D +GTIDK
Sbjct: 5 FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
+C+TCS M ECPGHFGH+ELAKP+FHIGF+ T+L I+RCVC++CSK+L D + F+ A
Sbjct: 65 RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124
Query: 125 LKIRHPKSRLEQILCACKTKNKCE-GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
LKIR+ K RL ++ CK K C GG+E + L D E + GCG + P +T
Sbjct: 125 LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLPKITK 184
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ + +I E+K D E +E+K L+AER
Sbjct: 185 EDLKIIVEFK---DVTD------ESIEKKSVLSAER 211
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 471 (170.9 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 471 (170.9 bits), Expect = 3.1e-43, P = 3.1e-43
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 471 (170.9 bits), Expect = 3.6e-43, P = 3.6e-43
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 471 (170.9 bits), Expect = 3.6e-43, P = 3.6e-43
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 471 (170.9 bits), Expect = 3.6e-43, P = 3.6e-43
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 471 (170.9 bits), Expect = 3.6e-43, P = 3.6e-43
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 471 (170.9 bits), Expect = 3.6e-43, P = 3.6e-43
Identities = 94/204 (46%), Positives = 130/204 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEPVER 211
+ AE+K + + ++ L P ER
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP-ER 220
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 457 (165.9 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 90/203 (44%), Positives = 129/203 (63%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 16 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGN 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++RCVCF CSK+L D + K K + K + P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQP 135
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNM 188
+ RL + CK KN CEGG+E+D + E + K K GCG QP + G+ +
Sbjct: 136 RKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLEL 195
Query: 189 IAEYKAQRKKNDDQGQLPEPVER 211
AE+K + + ++ L P ER
Sbjct: 196 YAEWKHVNEDSQEKKILLSP-ER 217
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 455 (165.2 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 98/221 (44%), Positives = 137/221 (61%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 445 (161.7 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 94/214 (43%), Positives = 128/214 (59%)
Query: 7 FSPFKVA--KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGM-PMAGGLSDLRLGTIDK 62
FSP V +V VQF ILSP+EIR MSV +I+ +T E G P GGL D RLGTID+
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC M +CPGHFGH+ELAKP+FHIGF+ + I+ CVC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCE-----GGDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
+ R PK+RL + CKTK C+ G D D+ + + G GCGA
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGH-------GGCGAA 178
Query: 178 QPTLTIDGMNMIAEYKAQRKKND-DQGQLPEPVE 210
QPT+ DG+ + +K + ++D + +L P+E
Sbjct: 179 QPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLE 212
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 429 (156.1 bits), Expect = 8.8e-39, P = 8.8e-39
Identities = 88/209 (42%), Positives = 125/209 (59%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ F+C+TC +M ECPGHFGH+ELAKP+FHIGF+ + VC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CKTK CE + D ++ ++P R GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNEDEMT------DQPSR---GGCGHPQ 171
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K Q K DD Q PE
Sbjct: 172 PTIRRDGLKLWGTWK-QNKNYDDNDQ-PE 198
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 429 (156.1 bits), Expect = 8.8e-39, P = 8.8e-39
Identities = 88/209 (42%), Positives = 125/209 (59%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ F+C+TC +M ECPGHFGH+ELAKP+FHIGF+ + VC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CKTK CE + D ++ ++P R GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNEDEMT------DQPSR---GGCGHPQ 171
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K Q K DD Q PE
Sbjct: 172 PTIRRDGLKLWGTWK-QNKNYDDNDQ-PE 198
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 413 (150.4 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 92/217 (42%), Positives = 128/217 (58%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
+P ++ V VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C
Sbjct: 10 APLRI--VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC+ N+ +CPGHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + LK
Sbjct: 68 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 127
Query: 128 R--HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPL---RKRKSGCGALQPTLT 182
+ K RL I CK K+ CEG E + + D ++P+ +K GCG QP+
Sbjct: 128 TGTNSKKRLTMIYDLCKAKSVCEGAAEKE--EGMPDDPDDPMNDGKKVAGGCGRYQPSYR 185
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K + N+D ERK LTAER
Sbjct: 186 RVGIDINAEWK--KNVNEDTQ------ERKIMLTAER 214
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 413 (150.4 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 92/217 (42%), Positives = 128/217 (58%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
+P ++ V VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C
Sbjct: 10 APLRI--VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC+ N+ +CPGHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + LK
Sbjct: 68 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 127
Query: 128 R--HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPL---RKRKSGCGALQPTLT 182
+ K RL I CK K+ CEG E + + D ++P+ +K GCG QP+
Sbjct: 128 TGTNSKKRLTMIYDLCKAKSVCEGAAEKE--EGMPDDPDDPMNDGKKVAGGCGRYQPSYR 185
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K + N+D ERK LTAER
Sbjct: 186 RVGIDINAEWK--KNVNEDTQ------ERKIMLTAER 214
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 403 (146.9 bits), Expect = 5.2e-36, P = 5.2e-36
Identities = 83/202 (41%), Positives = 117/202 (57%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK CE DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVCE----TDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND-DQGQL 205
G+ ++ +K R D D+ +L
Sbjct: 178 GLKLVGSWKKDRATGDADEPEL 199
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 398 (145.2 bits), Expect = 1.8e-35, P = 1.8e-35
Identities = 83/211 (39%), Positives = 120/211 (56%)
Query: 1 MENC-FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRL 57
M N F +S + + +QF + SP+EI++MSV +++ +T + R P GL+D RL
Sbjct: 1 MSNVYFPYSKAPLRTIAEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRL 60
Query: 58 GTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
GTID+++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI A+
Sbjct: 61 GTIDRQWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTS 120
Query: 118 DDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
D KF AL+IR PK R + I K CE D G + +P+R GCG
Sbjct: 121 DPKFLDALRIRDPKRRFDHIWRLSKDILICEA-DPPPEDDEYGKESSKPVRLH-GGCGNA 178
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQG-QLPE 207
QPT+ +G+ ++ +K + D+ Q PE
Sbjct: 179 QPTVRKEGITLVGTWKPSKSMMDEMDMQQPE 209
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 377 (137.8 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 78/198 (39%), Positives = 118/198 (59%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDKRFK 65
+P K + +QF +L+P+EI+ MSV + + T + R P GGL+D LGT D+++K
Sbjct: 11 APLKT--IEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDRQYK 68
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE-DDKFKLA 124
C+TC+++M CPGHFGH+ELAKP++H GF+ I+ VC CSK+L DE D++F A
Sbjct: 69 CKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENNDEQFAQA 128
Query: 125 LKIRHPKSRLEQILCACKTKNKCE---GG-DEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
L++R PK+R + ACK K CE GG DE D + G E + GCG+ P
Sbjct: 129 LRLRDPKARFAMVWKACKGKKVCEIETGGKDEKDSIDTA--TGIEKVPH--GGCGSTHPD 184
Query: 181 LTIDGMNMIAEYKAQRKK 198
+ + + A+ + R++
Sbjct: 185 IRKKALQLYAKVEEAREE 202
Score = 36 (17.7 bits), Expect = 8.3e-34, Sum P(2) = 8.3e-34
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 196 RKKNDDQGQLPEPVER 211
+KK+D+ QLP V R
Sbjct: 960 KKKDDNDMQLPLNVAR 975
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 235 (87.8 bits), Expect = 3.1e-18, P = 3.1e-18
Identities = 49/143 (34%), Positives = 87/143 (60%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDKRFKCETCSS 71
K+ +QF +LS D+I ++S +I + + + + P G+ D +LGT DK+ C TC
Sbjct: 13 KIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAMCTTCGL 72
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPK 131
++ +C GHFG+++L P+FHIG++K ++ I++ +C +CS IL +EE ++ L K+R+ K
Sbjct: 73 SIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLR-KMRNKK 131
Query: 132 -------SRLEQILCACKTKNKC 147
S L++I C+ +C
Sbjct: 132 MDNLQRKSLLKKIFLECRKTKEC 154
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 229 (85.7 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 56/151 (37%), Positives = 83/151 (54%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEI---DHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+++ +QF I P+E K E+ D T+R P G DL +GT +K+ C TC
Sbjct: 12 RIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRS-PAEHGALDLHMGTSNKQINCATCG 70
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL-ADEEDDKFKLALK-IR 128
+M +C GHFG+++LA P+FHIG+ K LTI++ +C +CS +L +D+E +F LK +R
Sbjct: 71 ESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQF---LKDLR 127
Query: 129 HP---KSRLEQILCA-----CKTKNKCEGGD 151
P R QI C CK +C D
Sbjct: 128 RPGIDNLRRSQI-CKRINDHCKKMRRCSKCD 157
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 229 (85.7 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 49/142 (34%), Positives = 80/142 (56%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER--GMPMAGGLSDLRLGTIDKRFKCETCSS 71
+++ ++F I+S ++I K S +I + + + G+P G+ DL+LG CETC+
Sbjct: 34 EIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCNK 93
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--- 128
+ C GHFG++EL P+FHIG+ K ++ I+ C+C CS +L +E F LK +
Sbjct: 94 KLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKKKSTD 153
Query: 129 ---HPKSRLEQILCACKTKNKC 147
+ K ++IL CK NKC
Sbjct: 154 DSFYKKHLFKRILNNCKKVNKC 175
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 229 (85.7 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 49/142 (34%), Positives = 80/142 (56%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER--GMPMAGGLSDLRLGTIDKRFKCETCSS 71
+++ ++F I+S ++I K S +I + + + G+P G+ DL+LG CETC+
Sbjct: 34 EIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCNK 93
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--- 128
+ C GHFG++EL P+FHIG+ K ++ I+ C+C CS +L +E F LK +
Sbjct: 94 KLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKKKSTD 153
Query: 129 ---HPKSRLEQILCACKTKNKC 147
+ K ++IL CK NKC
Sbjct: 154 DSFYKKHLFKRILNNCKKVNKC 175
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 221 (82.9 bits), Expect = 9.8e-17, P = 9.8e-17
Identities = 51/144 (35%), Positives = 77/144 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEI---DHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+++ ++FS LS +I S E+ D + P A G D ++G +C TC
Sbjct: 12 RIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCH 71
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
N+ C GHFGHL+LA P+FHIG+ K + I++ +C NCS IL E D K + ++R P
Sbjct: 72 GNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETD-KRQFLHELRRP 130
Query: 131 ---KSR----LEQILCACKTKNKC 147
R L++IL CK + +C
Sbjct: 131 GVDNLRRMGILKKILDQCKKQRRC 154
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 214 (80.4 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 44/143 (30%), Positives = 79/143 (55%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT--TERG-MPMAGGLSDLRLGTIDKRFKCETCSS 71
++ ++F LS +I S EI E+G +P G D ++G +C TC
Sbjct: 13 IKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCHG 72
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPK 131
N+ C GHFGH+ LA P+FH+G+ K+++++++C+C +C+ +L DE+ + L +R P
Sbjct: 73 NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKRQYLN-DLRKPH 131
Query: 132 ----SRLE---QILCACKTKNKC 147
R++ +I+ CK + +C
Sbjct: 132 IDNLRRMKIIKKIIEQCKKQRRC 154
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 203 (76.5 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 47/142 (33%), Positives = 74/142 (52%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTE-RGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K+ VQF I DEI++ ++ I + + P+ G+ D R+G K CETC
Sbjct: 14 KISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQG 73
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP-- 130
+ EC GHFG+L+LA P+FHIG ++ + I++ +C C+ ++ ED + K+ +P
Sbjct: 74 LNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQL-YEKKLHNPNF 132
Query: 131 ----KSRLE-QILCACKTKNKC 147
K L Q+L K KC
Sbjct: 133 SYLGKKALHVQMLAKAKKVTKC 154
Score = 36 (17.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 139 CACKTKNKCEGGDEIDV 155
CAC N GDE+++
Sbjct: 490 CACTPYNADFDGDEMNL 506
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 202 (76.2 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 46/143 (32%), Positives = 78/143 (54%)
Query: 11 KVAKV-RMVQFSILSPDEIRKMSVTEIDHGK----TTERGMPMAGGLSDLRLGTIDKRFK 65
+V KV + ++F +LS D+I V E+ K +R + G L D R+G +K
Sbjct: 19 RVPKVIKELKFGVLSNDDIVSQGVVEVSDRKFFNLENDRSIVPNGPL-DARMGISNKTST 77
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C+TC + C GHFGH+ L P FH+G+ K +++I++ +C CS IL E + + L
Sbjct: 78 CQTCGGALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPEAERRAFLR- 136
Query: 126 KIRHPK-SRLEQILCACKTKNKC 147
++R P+ L ++ A + ++C
Sbjct: 137 EMRRPRLDNLRRMQIAKRVNDRC 159
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 201 (75.8 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 43/143 (30%), Positives = 80/143 (55%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG---MPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + ++ + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK--- 126
N+ +C GH+G+++L P FH+G+ K ++ I++ +C C +I L+ EE +F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R +++ C+ KN C
Sbjct: 134 LTYLQKRGLKKKVSEKCRKKNTC 156
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 201 (75.8 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 43/143 (30%), Positives = 80/143 (55%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG---MPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + ++ + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK--- 126
N+ +C GH+G+++L P FH+G+ K ++ I++ +C C +I L+ EE +F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R +++ C+ KN C
Sbjct: 134 LTYLQKRGLKKKVSEKCRKKNTC 156
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 199 (75.1 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 42/143 (29%), Positives = 80/143 (55%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEI---DHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + ++ + + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLALK--- 126
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I+ +E+ K F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R ++I C+ KN C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKNIC 156
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 198 (74.8 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 42/143 (29%), Positives = 79/143 (55%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG---MPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + ++ + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLALK--- 126
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I+ +E+ K F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R ++I C+ KN C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKNIC 156
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 198 (74.8 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 42/143 (29%), Positives = 79/143 (55%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG---MPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + ++ + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLALK--- 126
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I+ +E+ K F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R ++I C+ KN C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKNIC 156
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 198 (74.8 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 44/139 (31%), Positives = 79/139 (56%)
Query: 14 KVRMVQFSILSPDEIRKMS----VTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
K+ + F + S +++R+ + V++ + + T P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSSEQMRQQAHIQVVSKNLYSQDTSH-KPLQYGVLDHRMGTSEKDRPCETC 72
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH 129
N+ +C GH+G+L+L P FHIG+ K ++ I++ +C CS IL +E+ K + +R
Sbjct: 73 GKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEE-KLQFLDYLRR 131
Query: 130 PK-SRLEQILCACKTKNKC 147
P + L++ K +KC
Sbjct: 132 PGLAYLQKRGLKKKISDKC 150
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 196 (74.1 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 42/143 (29%), Positives = 79/143 (55%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG---MPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + ++ + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK--- 126
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I L+ EE +F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R ++I C+ K+ C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKSTC 156
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 186 (70.5 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 48/147 (32%), Positives = 73/147 (49%)
Query: 11 KVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RG--MPMAGGLSDLRLGTIDKRFKC 66
K KV V+F+ + +R+ + I + K E G P G D ++G K C
Sbjct: 11 KALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLA- 124
TC + +C GHFG+ +L P+FHIGF K + +++C+C NCS IL E + F
Sbjct: 71 STCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQV 130
Query: 125 ----LKIRHPKSRLEQILCACKTKNKC 147
L H K+ ++I+ ACK + C
Sbjct: 131 MNPNLDYLHRKALHKRIVAACKKGSTC 157
Score = 36 (17.7 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 139 CACKTKNKCEGGDEIDV 155
CAC N GDE+++
Sbjct: 487 CACTPYNADFDGDEMNL 503
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 180 (68.4 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 41/117 (35%), Positives = 61/117 (52%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSS 71
+++ V F +LS +EIRK+S +I + + G P+ GGL DL LG R C TC
Sbjct: 9 SEITSVDFGVLSDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAF-LRNVCTTCGL 67
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALKI 127
+ CPGH GH+EL P+++ F L +R C C K ++ E F+ L +
Sbjct: 68 DEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHL 124
Score = 42 (19.8 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 157 SLLGHD-----GEEPLRKRKSGCGALQPTLTIDGMNM 188
S++GH GE+ LR + GA D MNM
Sbjct: 581 SMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNM 617
Score = 38 (18.4 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 168 RKRKSGCGALQPTLTIDGMNMIAEYKAQRKK---NDDQG-QLPEPVER 211
R + + CG P DG I E K+ N +G Q P+ +++
Sbjct: 223 RPKCTNCGMYSPGFRKDGFTKIFENSLTDKQITNNRVKGLQRPDMIKK 270
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 192 (72.6 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 41/143 (28%), Positives = 78/143 (54%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG---MPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + S +E+R+ + ++ + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLALK--- 126
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I+ +E+ K F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R ++I C+ KN C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKNTC 156
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 191 (72.3 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 41/143 (28%), Positives = 78/143 (54%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG---MPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + S +E+R+ + ++ + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLALK--- 126
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I+ +E+ K F LK
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEERKQFLDYLKRPG 133
Query: 127 IRHPKSR--LEQILCACKTKNKC 147
+ + + R ++I C+ KN C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKNTC 156
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 176 (67.0 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 39/107 (36%), Positives = 55/107 (51%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRFKCETCSS 71
+ + V F +LS DEIR SV I++ T + + P+ GGL D LG C TC+
Sbjct: 9 SSIDSVSFELLSADEIRAFSVRRIENDSTFDTLLNPVPGGLYDPALGAWGDSV-CATCNL 67
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
CPGH GH+EL P++H FM +L ++R C C + D
Sbjct: 68 GPSACPGHPGHIELPVPVYHPVFMDQVLRLLRSQCAYCHRFRMRRRD 114
Score = 41 (19.5 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 157 SLLGH-----DGEEPLRKRKSGCGALQPTLTIDGMNM 188
S++GH GE+ +R + C D MNM
Sbjct: 615 SIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNM 651
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 177 (67.4 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 37/113 (32%), Positives = 67/113 (59%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFK-CETCSSNMGE 75
++F++ + EIRK+SV ++ G T + G + GGL D+R+G+ + C TC + +
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTCLK-LQD 74
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI 127
CPGH GH+EL P+++ F+K + ++ C +C K+ + D E + L L++
Sbjct: 75 CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRL 127
Score = 39 (18.8 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 157 SLLGHD-----GEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
S++GH GE+ R S C A DG M A Y
Sbjct: 537 SIMGHKARILHGEKTFRLHYSNCKAYNADF--DGDEMNAHY 575
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 186 (70.5 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 36/97 (37%), Positives = 58/97 (59%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ V F + D++RK+SV +I ++ + G P+ GGL D LG +C TCS +
Sbjct: 12 EISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATCSLD 71
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
ECPGHFGH+ELA P ++ +T+ +++ CF+C
Sbjct: 72 FIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHC 108
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 181 (68.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 36/93 (38%), Positives = 51/93 (54%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F + S DE RK+SV I + + + G A GL DL LG D + C TC + C
Sbjct: 15 MSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICSTCMQDFSSC 74
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
PGHFGH+EL P+++ F L ++R C +C
Sbjct: 75 PGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSC 107
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 163 (62.4 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 38/117 (32%), Positives = 58/117 (49%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSS 71
+++ V F IL+ EIR +S +I + + G P++GGL DL LG + C TC
Sbjct: 9 SEITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNL-CSTCGL 67
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI 127
+ CPGH GH+EL P ++ F L +R C C L E ++ L++
Sbjct: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRL 124
Score = 42 (19.8 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 159 LGHDGEEPL--RKRKSGCGALQPTLTIDGMNMIAEYKAQRKK---NDDQGQLPEPVERKQ 213
L H+ + L R + CG P DG I E K+ N +G + + + +KQ
Sbjct: 219 LVHEFHKKLLSRGKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQ 278
Score = 38 (18.4 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 168 RKRKSG--CGALQPTLTIDGMNMIAEYKAQRKKNDDQ 202
+KR +G G P L D N + K + ND++
Sbjct: 1336 QKRTTGPDIGVAVPRLQTDVANSSSNSKRLEEDNDEE 1372
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 167 (63.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 34/98 (34%), Positives = 51/98 (52%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSS 71
++++ V+F I D++ K+SV +I + + P GGL DL LG K C TC
Sbjct: 9 SEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHL 68
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
+ CPGHFGH+ L P +H F + ++R C C
Sbjct: 69 DERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYC 106
Score = 38 (18.4 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 163 GEEPLRKRKSGCGALQPTLTIDGMNM 188
GE+ +R + C + D MNM
Sbjct: 626 GEKTIRMHYANCNSYNADFDGDEMNM 651
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 176 (67.0 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
V V+FS ++ ++RK S ++ + G P GGL DL+LG D + C +C
Sbjct: 27 VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQLK 86
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
CPGH GH+EL P++H L ++ CF C +A ED
Sbjct: 87 LACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPED 131
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 170 (64.9 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
CPGH GH+EL +++ L ++R C NC
Sbjct: 71 FNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 164 (62.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH+EL +++ L ++R C NC
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 164 (62.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH+EL +++ L ++R C NC
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 164 (62.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH+EL +++ L ++R C NC
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 164 (62.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH+EL +++ L ++R C NC
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 161 (61.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH++L +++ L ++R C NC
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNC 107
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 161 (61.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH++L +++ L ++R C NC
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNC 107
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 160 (61.4 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 45/124 (36%), Positives = 63/124 (50%)
Query: 25 PDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFK-CETCSSNMGECPGHFGH 82
P EI K+SV +I KT E G P+AGGL D LG D F C TC+ CPGH GH
Sbjct: 25 PHEIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGP-DNTFDMCMTCNQYERHCPGHMGH 83
Query: 83 LELAKPMFHIGFMKTLLTIMRCVCFNCSKILA--DEEDDKFKLA------LKIRHPKSRL 134
++LA P+F+ + +++ C +C ++ D + + LA L + H L
Sbjct: 84 IQLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGDGVNARMLLAQLRCFELGVEHVAFDL 143
Query: 135 EQIL 138
E IL
Sbjct: 144 ESIL 147
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 156 (60.0 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH++L +++ L ++R C +C
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSC 107
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 155 (59.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH++L +++ L ++R C NC
Sbjct: 71 FTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNC 107
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 146 (56.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 28 IRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELA 86
IRK+SV I + + + G P A GL DL LG D + C TC + C GH GH++L
Sbjct: 46 IRKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQDFNNCSGHLGHIDLP 105
Query: 87 KPMFHIGFMKTLLTIMRCVCFNC 109
+++ L ++R C NC
Sbjct: 106 LTVYNPLLFDKLYLLLRGSCLNC 128
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 219 219 0.00092 112 3 11 22 0.37 33
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 584 (62 KB)
Total size of DFA: 174 KB (2101 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.46u 0.08s 19.54t Elapsed: 00:00:02
Total cpu time: 19.47u 0.08s 19.55t Elapsed: 00:00:02
Start: Sat May 11 02:16:50 2013 End: Sat May 11 02:16:52 2013