BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045123
(219 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 345 bits (886), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 162/219 (73%), Positives = 190/219 (86%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +VAKVRMVQF ILSPDEIR+MSV +I+HG+TTERG P GGLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC+++M ECPGHFGHLELAKPMFHIGF+KT+LTIMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK AL+IR+PK+RL++IL ACK K+KCEGGDEID+ G D +EP++K + GCGA QP
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDI---PGQDTDEPVKKSRGGCGAQQPK 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+TI+GM MIAEYKAQRKK+DDQ QLPEPVERKQTL+AER
Sbjct: 178 ITIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAER 216
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 163/219 (74%), Positives = 189/219 (86%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKVRMVQF ILSPDEIR+MSV +I+ +TTERG P GGLSDLRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC++NM ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK ALKI++PK+RL++IL ACK K KCEGGD+IDV S D +EP++K + GCGA QP
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHS---QDTDEPVKKSRGGCGAQQPR 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+TI+GM MIAEYKAQRKKNDDQ QLPEPVERKQTLTAER
Sbjct: 178 MTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAER 216
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 162/219 (73%), Positives = 189/219 (86%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +VAKVRMVQF ILSPDEIR+MSV +I+HG+TTERG P GGLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC+++M ECPGHFGHLELAKPMFHIGF+KT+LTIMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK AL+IR+PK+RL++IL ACK K+KCEGGDEID+ G D EE ++K + GCGA QP
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDI---PGQDTEESVKKSRGGCGAQQPK 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+TI+GM MIAEYKAQRKK+DDQ QLPEPVERKQTL+AER
Sbjct: 178 ITIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAER 216
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 159/219 (72%), Positives = 184/219 (84%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKVRMVQF ILSPDEIR+MSV +I+HG+TTERG P GLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC++NM ECPGHFGHLELAKPMFHIGFMKT+LTIMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK AL+I++PK+RL +IL ACK K KCEGGDEIDV G D ++P++K + GCGA QP
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDV---QGQDSDQPVKKSRGGCGAQQPK 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++I+GM M AEYKAQRKKNDD QLPEPVERKQTLTAER
Sbjct: 178 ISIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAER 216
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/219 (72%), Positives = 184/219 (84%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKVRMVQF ILSPDEIR+MSV +I+HG+TTERG P GLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC++NM ECPGHFGHLELAKPMFHIGFMKT+LTIMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK AL+I++PK+RL +IL ACK K KCEGGDEIDV G D ++P++K + GCGA QP
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDV---QGQDSDQPVKKSRGGCGAQQPK 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++I+GM M AEYKAQRKKNDD QLPEPVERKQTLTAER
Sbjct: 178 ISIEGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAER 216
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 160/219 (73%), Positives = 186/219 (84%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKVRMVQF ILSPDEIR+MSV +I+H +TTERG P GGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC++NM ECPGHFGHLELAKPMFHIGFMKT+L+IMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK A KIR+PK+RL++IL ACK K+KCEGGDEI+ +L D +EP++K + GCGA QP
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQAL---DSDEPVKKSRGGCGAQQPK 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
LTI+GM MIAEYK QRKKNDD QLPEPVERKQ L+AER
Sbjct: 178 LTIEGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAER 216
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 322 bits (824), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 160/249 (64%), Positives = 186/249 (74%), Gaps = 33/249 (13%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKVRMVQF ILSPDEIR+MSV +I+H +TTERG P GGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE---- 116
D++ KCETC++NM ECPGHFGHLELAKPMFHIGFMKT+L+IMRCVCFNCSKILADE
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTEN 120
Query: 117 --------------------------EDDKFKLALKIRHPKSRLEQILCACKTKNKCEGG 150
ED KFK A KIR+PK+RL++IL ACK K+KCEGG
Sbjct: 121 VKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGG 180
Query: 151 DEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVE 210
DEI+ +L D +EP++K + GCGA QP LTI+GM MIAEYK QRKKNDD QLPEPVE
Sbjct: 181 DEIETQAL---DSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEPVE 237
Query: 211 RKQTLTAER 219
RKQ L+AER
Sbjct: 238 RKQQLSAER 246
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 148/219 (67%), Positives = 182/219 (83%), Gaps = 2/219 (0%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +V+KVR+VQF ILSPDEIR+MSV ++H +TTE+G P GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC +NM ECPGHFG+LELAKPM+H+GFMKT+L+IMRCVCFNCSKILADEE+ K
Sbjct: 61 DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK A+KI++PK+RL++IL ACK K KC+GGD+ID + H +EP++K + GCGA QP
Sbjct: 121 FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDID--DVQSHSTDEPVKKSRGGCGAQQPK 178
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
LTI+GM MIAEYK QRKKND+ QLPEP ERKQTL A+R
Sbjct: 179 LTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADR 217
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/237 (66%), Positives = 187/237 (78%), Gaps = 21/237 (8%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEI------RKMSVTEIDHGKTTERGMPMAGGLSD 54
M+ F FSP +VAKVRMVQF ILSPDEI R+M+V +I+HG+TTERG P GGLSD
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIVIFSILRQMAVVQIEHGETTERGKPKIGGLSD 60
Query: 55 LRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILA 114
RLGTID++ KCETC+++M ECPGHFG+LELAKPMFHIGF+KT+L+IMRCVCFNCSKILA
Sbjct: 61 PRLGTIDRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILA 120
Query: 115 DE------------EDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD 162
DE D KFK A++I++PK RL +IL ACK K KCEGGD+ID L HD
Sbjct: 121 DEVLSRPFKPVLLINDHKFKQAMRIKNPKHRLRKILDACKNKTKCEGGDDID---LPEHD 177
Query: 163 GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+EPL+K + GCGA QP +TI+GM MIAEYKAQRKK+DDQ QLPEPVERKQTL+AER
Sbjct: 178 TKEPLKKSRGGCGAQQPKITIEGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAER 234
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 147/219 (67%), Positives = 180/219 (82%), Gaps = 4/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKV +VQF ILSPDEIR+MSV +I+H +T ERG P GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC + M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE++ K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK ALKIR+PK+RL++I ACK+K C GGD++DV D +EP++KR GCGA QP
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQE---QDTDEPVKKR-GGCGAQQPN 176
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T+DGM M+AE+KA +KK+DDQ QLPEPVERKQ L+AER
Sbjct: 177 ITVDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAER 215
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 311 bits (798), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 147/219 (67%), Positives = 178/219 (81%), Gaps = 4/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKV VQF ILSPDEIR+MSV +I+H +T ERG P GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVEFVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC + M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE++ K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK ALKIR+PK+RL++I ACK+K C GGD++DV D +EP++KR GCGA QP
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQE---QDTDEPIKKR-GGCGAQQPN 176
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T+DGM M+AE+KA +KK DDQ QLPEPVERKQ L+AER
Sbjct: 177 ITVDGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAER 215
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats.
Identities = 143/215 (66%), Positives = 174/215 (80%), Gaps = 3/215 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F +SP +VAKV VQF +LSPDEIR+MSV I+H +T E+G P GGLSD R+GTID++
Sbjct: 6 FPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGTIDRKI 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KCETC + M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE+D KFK A
Sbjct: 66 KCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
LKIR+PK++L++I ACK + C GGD +DV G D +P++KR GCGA QP +T+D
Sbjct: 126 LKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTD--DPVKKR-GGCGAQQPNITVD 182
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
GM M+AEYKA +KKNDDQ QLPEPV+RKQ L+AER
Sbjct: 183 GMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAER 217
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/219 (67%), Positives = 178/219 (81%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKV++VQF ILSPDEIR+MSV I+H +T ERG GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KC+TC + M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADEE+ K
Sbjct: 61 DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEEETK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK ALKIR+PK RL +I ACK+K C GGDE+DV D +EP++KR SGCGA QP
Sbjct: 121 FKQALKIRNPKHRLRRIYDACKSKKICAGGDELDVQD--QQDTDEPVKKR-SGCGAQQPN 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T+DGM M+AE+KA +KK+DDQ QLPEPVERKQ L+AER
Sbjct: 178 ITVDGMKMVAEFKATKKKSDDQDQLPEPVERKQILSAER 216
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 145/220 (65%), Positives = 179/220 (81%), Gaps = 3/220 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +V+KVR+VQF ILSPDEIR+MSV ++H +TTE+G P GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE-DD 119
D++ KCETC +NM ECPGHFG+LELAKPM+H+GFMKT+L+IMRCVCFNCSKILADE
Sbjct: 61 DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRS 120
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
F+ A+KI++PK+RL++IL ACK K KC+GGD+ID + H +EP++K + GCGA QP
Sbjct: 121 LFRQAMKIKNPKNRLKKILDACKNKTKCDGGDDID--DVQSHSTDEPVKKSRGGCGAQQP 178
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
LTI+GM MIAEYK QRKKND+ QLPEP ERKQTL A+R
Sbjct: 179 KLTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADR 218
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 145/220 (65%), Positives = 179/220 (81%), Gaps = 3/220 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +V+KVR+VQF ILSPDEIR+MSV ++H +TTE+G P GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE-DD 119
D++ KCETC +NM ECPGHFG+LELAKPM+H+GFMKT+L+IMRCVCFNCSKILADE
Sbjct: 61 DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRS 120
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
F+ A+KI++PK+RL++IL ACK K KC+GGD+ID + H +EP++K + GCGA QP
Sbjct: 121 LFRQAMKIKNPKNRLKKILDACKNKTKCDGGDDID--DVQSHSTDEPVKKSRGGCGAQQP 178
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
LTI+GM MIAEYK QRKKND+ QLPEP ERKQTL A+R
Sbjct: 179 KLTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADR 218
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 145/220 (65%), Positives = 179/220 (81%), Gaps = 3/220 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +V+KVR+VQF ILSPDEIR+MSV ++H +TTE+G P GGLSD+RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE-DD 119
D++ KCETC +NM ECPGHFGHLELAKPM+H+GFMKT+L+IMRCVCFNCSKILADE +
Sbjct: 61 DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRN 120
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
+ A+KI++PK+RL++IL ACK K KCEGGD+ID + D +EP++K + GCGA QP
Sbjct: 121 LSRQAMKIKNPKNRLKKILDACKNKTKCEGGDDID--DVQNQDTDEPVKKSRGGCGAQQP 178
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
LTI+GM MIAEYK RKKND+ QLPEP ERKQTL A+R
Sbjct: 179 KLTIEGMKMIAEYKIPRKKNDEPDQLPEPAERKQTLGADR 218
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 143/215 (66%), Positives = 174/215 (80%), Gaps = 3/215 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F +SP +VAKV VQF +LSPDEIR+MSV I+H +T E+G P GGLSD R+GTID++
Sbjct: 6 FPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGTIDRKI 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KCETC + M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE+D KFK A
Sbjct: 66 KCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
LKIR+PK++L++I ACK + C GGD +DV G D +P++KR GCGA QP +T+D
Sbjct: 126 LKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTD--DPVKKR-GGCGAQQPNITVD 182
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
GM M+AEYKA +KKNDDQ QLPEPV+RKQ L+AER
Sbjct: 183 GMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAER 217
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 178/219 (81%), Gaps = 2/219 (0%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAKV++VQF ILSPDEIR+MSV I++ +T E+G GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVVIEYAETMEKGKAKPGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KC+TC + M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE+D K
Sbjct: 61 DRKVKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDAK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK ALKIR+PK++L +I ACK+K C GGD+++V D +EP++K++ GCGA QP
Sbjct: 121 FKQALKIRNPKNKLRRIYDACKSKKICAGGDDLEVED--QQDTDEPVKKKRGGCGAQQPN 178
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T+DGM M+AE+K +KKNDDQ QLPEPVERKQ L+AER
Sbjct: 179 ITVDGMKMVAEFKQTKKKNDDQDQLPEPVERKQILSAER 217
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/219 (63%), Positives = 176/219 (80%), Gaps = 9/219 (4%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +V+KVR+VQF ILSPDEIR+MSV ++H +TTE+G P GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC +NM ECPGHFG+LELAKPM+H+GFMKT+L+IMRCVCFNCSKILADE
Sbjct: 61 DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADE---- 116
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
A+KI++PK+RL++IL ACK K KC+GGD+ID + H +EP++K + GCGA QP
Sbjct: 117 ---AMKIKNPKNRLKKILDACKNKTKCDGGDDID--DVQSHSTDEPVKKSRGGCGAQQPK 171
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
LTI+GM MIAEYK +++ND+ QLPEP ERKQTL A+R
Sbjct: 172 LTIEGMKMIAEYKNSKEENDEPDQLPEPAERKQTLGADR 210
>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats.
Identities = 138/219 (63%), Positives = 168/219 (76%), Gaps = 17/219 (7%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP +VAK R+MSV +I+H +T ERG P GGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAK--------------RQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 46
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC + M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE+D K
Sbjct: 47 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 106
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK ALKIR+PK+RL++I ACK+K C GGD++DV D +EP++KR GCGA QP
Sbjct: 107 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQE--QQDTDEPVKKR-GGCGAQQPN 163
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T+DGM M+AE+KA +KKNDDQ QLPEPVERKQ L+AER
Sbjct: 164 ITVDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAER 202
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats.
Identities = 136/219 (62%), Positives = 170/219 (77%), Gaps = 3/219 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F SP +VAKV +VQF ILSPDEIR+MSV +I++ +T E+G P AGGLSD R+GT+
Sbjct: 1 MDVRFPHSPAEVAKVELVQFGILSPDEIRQMSVAQIEYAETMEKGKPKAGGLSDPRMGTV 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KC+TC S M ECPGHFGHLELAKPMFHIGFMKT+L+IMRCVCFNCSKIL DE++ K
Sbjct: 61 DRKIKCQTCMSGMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDNTK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK ALKIR+PK+RL++I ACKTK C G+ D+ D +E + R+ GCGA QP
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKTKKVC--GEGDDLDVQQQQDTDEHV-NRRGGCGAQQPI 177
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T+DG+ M+ E+KA +KKNDDQ QL E VE KQ L+AER
Sbjct: 178 ITVDGVKMLVEFKAPKKKNDDQEQLSELVEPKQILSAER 216
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 130/189 (68%), Positives = 156/189 (82%), Gaps = 3/189 (1%)
Query: 31 MSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMF 90
MSV +I+H +T ERG P GGLSD RLGTID++ KCETC + M ECPGHFGHLELAKPMF
Sbjct: 1 MSVVQIEHAETMERGKPKPGGLSDPRLGTIDQKIKCETCMAGMAECPGHFGHLELAKPMF 60
Query: 91 HIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGG 150
HIGF+KT+L+IMRCVCFNCSKILADE+D KFK ALKIR+PK+RL++I ACK+K C GG
Sbjct: 61 HIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLKRIYDACKSKKVCAGG 120
Query: 151 DEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVE 210
D++DV D +EP++KR GCGA QP +T+DGM M+AE+KA +KKNDDQ QLPEPVE
Sbjct: 121 DDLDVQE--QQDTDEPVKKR-GGCGAQQPNITVDGMKMVAEFKAPKKKNDDQEQLPEPVE 177
Query: 211 RKQTLTAER 219
RKQ L+AER
Sbjct: 178 RKQILSAER 186
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/221 (60%), Positives = 170/221 (76%), Gaps = 4/221 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +A+V+ VQF I+SPDEIR+MSV I+ +T +RG P GGLSD RLGTI
Sbjct: 1 MDQRFAFSPADLARVKTVQFGIISPDEIRQMSVCLIESSETYDRGKPKMGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D+ KCETC+ +M ECPGHFGHLELAKPMFHIGF+KT+L+I+RCVC NCS+ LADEED +
Sbjct: 61 DRHTKCETCAGSMAECPGHFGHLELAKPMFHIGFLKTVLSILRCVCHNCSRCLADEEDHR 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVL-SLLGHDGEEPLRKRKSGCGALQP 179
FK A K+R+PK RL+++L CK+K KC+ GDE+D + G + E+ +K GCGA QP
Sbjct: 121 FKQARKVRNPKHRLKKVLDCCKSKTKCDAGDELDENDTRYGEETEK--KKSHGGCGAQQP 178
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQ-LPEPVERKQTLTAER 219
TIDGM ++AE+KA RKK D+Q Q +PEPVERKQ LTAE+
Sbjct: 179 KTTIDGMKLVAEFKASRKKGDEQDQHMPEPVERKQQLTAEK 219
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 129/221 (58%), Positives = 173/221 (78%), Gaps = 4/221 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +A+V+ VQF ILSPDEIR+M+V +I+ +T +RG P GGLSD RLGTI
Sbjct: 1 MDQRFAFSPADLARVKTVQFGILSPDEIRQMAVCKIESSETYDRGKPKIGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D+ KCETC+ +M ECPGHFG+LELAKPMFHIGF+KT+L+I+RCVC+NCS+ LADEED +
Sbjct: 61 DRHTKCETCAGSMTECPGHFGYLELAKPMFHIGFLKTVLSILRCVCYNCSRCLADEEDHR 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK-SGCGALQP 179
FK A K+R+PK RL+++L CK+K KC+ GD+ID ++ +GEE +K+ GCGA QP
Sbjct: 121 FKQAKKVRNPKHRLKKVLDCCKSKTKCDTGDDIDENDVM--NGEENEKKKSHGGCGAQQP 178
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQ-LPEPVERKQTLTAER 219
++IDGM ++AE+K RKK ++ Q +PEPVERKQ L+AE+
Sbjct: 179 KISIDGMKIVAEFKPSRKKGEEPEQHMPEPVERKQQLSAEK 219
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/239 (55%), Positives = 167/239 (69%), Gaps = 24/239 (10%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP ++A+V+ VQF ++SPDEIR+MSV +I+ +T +RG P +GGLSD RLGTI
Sbjct: 1 MDLRFPYSPAELARVKRVQFGLMSPDEIRQMSVCKIESSETYDRGKPKSGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE---- 116
D++ KCETC +M ECPGHFGHLELAKPMFHIGF+KT+L ++RCVC+NCS ILA E
Sbjct: 61 DRQTKCETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHILALEVCRE 120
Query: 117 --------------EDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLG-H 161
D KFKLA K ++PK RL+++L CK K KCEG + + G
Sbjct: 121 TLLLCFIFGLVCWQNDHKFKLAKKAKNPKQRLKKVLECCKNKQKCEGNNN----DMDGEQ 176
Query: 162 DGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQ-LPEPVERKQTLTAER 219
D +E +K GCGA QP +TIDGM +IAE+K +KK DDQ Q LPEPVERKQ LTAER
Sbjct: 177 DDQEGEQKGHGGCGAQQPKITIDGMKIIAEFKVPKKKGDDQDQYLPEPVERKQQLTAER 235
>gi|147846109|emb|CAN82015.1| hypothetical protein VITISV_034432 [Vitis vinifera]
Length = 251
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/239 (54%), Positives = 164/239 (68%), Gaps = 24/239 (10%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP + AKVR VQF + SPDEIR+MSV EID +T ERG P GGL+D RLG +
Sbjct: 1 MDMRFPYSPAEFAKVRAVQFGVXSPDEIRQMSVVEIDQSETMERGKPKRGGLADPRLGAM 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE---- 116
K KC+TC +M CPGHFGHLELAKPMFH GFM+T+LT++RCVCF+CS+IL+DE
Sbjct: 61 GKTQKCDTCMGSMAXCPGHFGHLELAKPMFHTGFMRTVLTVLRCVCFSCSRILSDEVLPT 120
Query: 117 ---------------EDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGH 161
ED KFK AL IR+PK RL +I ACK K KCEGG+E +V +
Sbjct: 121 LNFFQGFNYDVWNVGEDPKFKQALLIRNPKKRLPKIWDACKNKTKCEGGEEFEVRA---Q 177
Query: 162 DGEEPLRKRKSG-CGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ EE +R G CGA QP L++DGM +IAE+ AQ+K+ D + QLPEP ERK+ L+AER
Sbjct: 178 NPEESSGRRSGGVCGAQQPKLSVDGMKIIAEFNAQKKRGDPE-QLPEPAERKKQLSAER 235
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/231 (56%), Positives = 166/231 (71%), Gaps = 16/231 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F +SP ++A+V+ VQF ++SPDEIR+MSV +I+ +T +RG P +GGLSD RLGTI
Sbjct: 1 MDLRFPYSPAELARVKRVQFGLMSPDEIRQMSVCKIESSETYDRGKPKSGGLSDPRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC +M ECPGHFGHLELAKPMFHIGF+KT+L ++RCVC+NCS ILA E +
Sbjct: 61 DRQTKCETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHILALEVCRE 120
Query: 121 ----------FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLG-HDGEEPLRK 169
FKLA K ++PK RL+++L CK K KCEG + + G D +E +K
Sbjct: 121 TLLLCFIFGLFKLAKKAKNPKQRLKKVLECCKNKQKCEGNNN----DMDGEQDDQEGEQK 176
Query: 170 RKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQ-LPEPVERKQTLTAER 219
GCGA QP +TIDGM +IAE+K +KK DDQ Q LPEPVERKQ LTAER
Sbjct: 177 GHGGCGAQQPKITIDGMKIIAEFKVPKKKGDDQDQYLPEPVERKQQLTAER 227
>gi|222639938|gb|EEE68070.1| hypothetical protein OsJ_26086 [Oryza sativa Japonica Group]
Length = 804
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/149 (69%), Positives = 125/149 (83%), Gaps = 3/149 (2%)
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+ M ECPGHFGHLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE+D KFK ALKIR+P
Sbjct: 2 AGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNP 61
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
K+RL++I ACK+K C GGD++DV D +EP++KR GCGA QP +T+DGM M+A
Sbjct: 62 KNRLKRIYDACKSKKVCAGGDDLDVQE--QQDTDEPVKKR-GGCGAQQPNITVDGMKMVA 118
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+KA +KKNDDQ QLPEPVERKQ L+AER
Sbjct: 119 EFKAPKKKNDDQEQLPEPVERKQILSAER 147
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/138 (71%), Positives = 117/138 (84%), Gaps = 3/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L+IMRCVCFNCSK+LADEED KFK A+K+++PK RL ++L AC
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKVLADEEDHKFKQAMKVKNPKHRLRKVLDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KC+GGDEIDV G D EEP++K + GCGA QP LT++GM MIAEYKA +KKNDD
Sbjct: 61 KNKTKCDGGDEIDV---QGQDSEEPVKKPRGGCGAQQPKLTVEGMKMIAEYKATKKKNDD 117
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEPVERKQ L+AER
Sbjct: 118 QEQLPEPVERKQQLSAER 135
>gi|68300854|gb|AAY89364.1| RNA polymerase IV largest subunit [Glaucocystis nostochinearum]
Length = 526
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 151/217 (69%), Gaps = 13/217 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F S ++ KV +VQF IL PDEIR+MSV +I++ + E G P GGL D R+G+ID++F
Sbjct: 7 FPHSSAELRKVSVVQFGILGPDEIRRMSVAKIEYPECFENGRPKLGGLMDPRMGSIDRQF 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC+ +M ECPGHFGHLELAKP+FHIGFM T+L I+RCVCF+CSK+L D+ D +F+ A
Sbjct: 67 KCQTCAGSMSECPGHFGHLELAKPVFHIGFMTTILKILRCVCFHCSKLLCDKSDIRFRNA 126
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEID--VLSLLGHDGEEPLRKRKSGCGALQPTLT 182
L+++ P++RL ++ C+ K++CEGGDE+D +G DGE+ + R GCG P +
Sbjct: 127 LRLKKPETRLRAVMDICRGKSQCEGGDELDENAEKEIGPDGEK--KSRHGGCGNFVPKII 184
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+G+ + AE+ K D E +E++Q L+AE+
Sbjct: 185 REGLKLTAEFT---KVQD------ETIEKRQVLSAEK 212
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 150/217 (69%), Gaps = 13/217 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F S ++ KV +VQF IL PDEIR+MSV +I++ + E G P GGL D R+G+ID++F
Sbjct: 7 FPHSSAELRKVSVVQFGILGPDEIRRMSVAKIEYPECFENGRPKLGGLMDPRMGSIDRQF 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC+ +M ECPGHFGHLELAKP+ HIGFM T+L I+RCVCF+CSK+L D+ D +F+ A
Sbjct: 67 KCQTCAGSMSECPGHFGHLELAKPVLHIGFMTTILKILRCVCFHCSKLLCDKSDIRFRNA 126
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEID--VLSLLGHDGEEPLRKRKSGCGALQPTLT 182
L+++ P++RL ++ C+ K++CEGGDE+D +G DGE+ + R GCG P +
Sbjct: 127 LRLKKPETRLRAVMDICRGKSQCEGGDELDENAEKEIGPDGEK--KSRHGGCGNFVPKII 184
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+G+ + AE+ K D E +E++Q L+AE+
Sbjct: 185 REGLKLTAEFT---KVQD------ETIEKRQVLSAEK 212
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/138 (71%), Positives = 119/138 (86%), Gaps = 3/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
+LELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE+D KFK AL+I++PK+RL +IL AC
Sbjct: 1 YLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHKFKQALRIKNPKNRLRKILDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KCEGGD++D L G D EEP++K + GCGA QP +TI+GM + AEYKAQRKK+DD
Sbjct: 61 KNKTKCEGGDDLD---LPGQDTEEPVKKSRGGCGAQQPKITIEGMKINAEYKAQRKKSDD 117
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEPVERKQTL+AER
Sbjct: 118 QDQLPEPVERKQTLSAER 135
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/138 (71%), Positives = 115/138 (83%), Gaps = 3/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L+IMRCVCFNCSKIL DEED KFK + KIR+PK RL ++L AC
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEDHKFKQSQKIRNPKHRLRKVLDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KC+GGD+I+V D EEP++KR+ GCGA QP LT++GM MIAEYKA RKKNDD
Sbjct: 61 KNKTKCDGGDDIEVRD---QDLEEPVKKRRGGCGAQQPKLTVEGMKMIAEYKATRKKNDD 117
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEPVERKQ L+AER
Sbjct: 118 QEQLPEPVERKQQLSAER 135
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/138 (71%), Positives = 115/138 (83%), Gaps = 3/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L+IMRCVCFNCSKIL DEE+ KFK A KIR+PK RL ++L AC
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEEHKFKQAQKIRNPKHRLRKVLDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K +CEGGD+I+V D EEP++KR+ GCGA QP LT++GM MIAEYKA RKKNDD
Sbjct: 61 KNKTRCEGGDDIEVRD---QDLEEPVKKRRGGCGAQQPKLTVEGMKMIAEYKATRKKNDD 117
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEPVERKQ L+AER
Sbjct: 118 QEQLPEPVERKQQLSAER 135
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/138 (71%), Positives = 118/138 (85%), Gaps = 4/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE+D +FK +LK+R+PK RL ++L AC
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHRFKQSLKVRNPKHRLRKVLDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KCEGGDEIDV G + +EP++K++ GCGA QP LT++GM MIAEYKA +KKNDD
Sbjct: 61 KNKQKCEGGDEIDV---QGQESDEPVKKKRGGCGAQQPKLTVEGMKMIAEYKA-KKKNDD 116
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEPVERKQ LTAE+
Sbjct: 117 QEQLPEPVERKQQLTAEK 134
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/138 (70%), Positives = 115/138 (83%), Gaps = 2/138 (1%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGFMKT+L IMRCVCFNCSKILADE+D +FK ALKIR+PK+RL++I AC
Sbjct: 1 HLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADEDDVRFKQALKIRNPKNRLKRIYDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K+K KC GGD+IDV D +EP++K + GCGA QP +TIDGM M+AEYKA +KK+DD
Sbjct: 61 KSKKKCAGGDDIDVQG--QQDSDEPVKKSRGGCGAQQPNITIDGMKMVAEYKATKKKSDD 118
Query: 202 QGQLPEPVERKQTLTAER 219
QLPEPVERKQ L+AER
Sbjct: 119 PEQLPEPVERKQQLSAER 136
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/138 (68%), Positives = 116/138 (84%), Gaps = 3/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGFMK +L+I+RCVCFNCSKILADEED KFK A++IR+PK+RL+++L AC
Sbjct: 1 HLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEEDPKFKQAMRIRNPKNRLKKMLDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KCEGGDEIDV G + E P++K + GCGA QP ++IDGM M+AEYK Q+KK+DD
Sbjct: 61 KNKTKCEGGDEIDV---RGEEPEAPVKKSRGGCGAQQPKISIDGMKMVAEYKLQKKKSDD 117
Query: 202 QGQLPEPVERKQTLTAER 219
Q+PEPVERKQ L+AER
Sbjct: 118 PEQMPEPVERKQQLSAER 135
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 98/138 (71%), Positives = 112/138 (81%), Gaps = 3/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGFMK +L+IMRCVCFNCSKILADEED KFK + +I++PK RL ++L AC
Sbjct: 1 HLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHKFKQSQRIKNPKHRLRKVLDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KC+GGDEIDV D E+P++K + GCGA QP LTI+GM MIAEYK QRKK DD
Sbjct: 61 KNKTKCDGGDEIDVQD---EDLEKPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKTDD 117
Query: 202 QGQLPEPVERKQTLTAER 219
QLPEPVERKQ LTAER
Sbjct: 118 PEQLPEPVERKQQLTAER 135
>gi|296084063|emb|CBI24451.3| unnamed protein product [Vitis vinifera]
Length = 1607
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/168 (60%), Positives = 129/168 (76%), Gaps = 3/168 (1%)
Query: 43 ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIM 102
+RG P GGL+D RLGT+DK KC+TC +M CPGHFGHLELAKPMFH GFM+T+LT++
Sbjct: 2 KRGKPKRGGLADPRLGTMDKTQKCDTCMGSMAACPGHFGHLELAKPMFHTGFMRTVLTVL 61
Query: 103 RCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD 162
RCVCF+CS+IL+DEED KFK AL IR+PK+RL +I ACK K KCEGG+E +V + +
Sbjct: 62 RCVCFSCSRILSDEEDPKFKQALLIRNPKNRLPKIWDACKNKTKCEGGEEFEVRA--QNP 119
Query: 163 GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVE 210
E R+ GCGA QP L++DGM +IAE+KAQ+K+ DD QLPEP +
Sbjct: 120 EESSGRRSGGGCGAQQPKLSVDGMKIIAEFKAQKKR-DDPEQLPEPFQ 166
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 103/215 (47%), Positives = 138/215 (64%), Gaps = 12/215 (5%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S +V KV+ VQF ILSP++IR MSV ++H +T E G P GGL D +GTIDK KC
Sbjct: 7 STAEVRKVKRVQFGILSPEDIRDMSVALVEHPETYENGKPKIGGLVDPHMGTIDKTQKCA 66
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TCS M ECPGHFGH+ELAKP+FHIGF+ T+L I++CVC++CSK+L D +D F+ ALKI
Sbjct: 67 TCSGTMAECPGHFGHIELAKPVFHIGFINTVLKILKCVCYHCSKLLVDTDDIHFRQALKI 126
Query: 128 RHPKSRLEQILCACKTKNKC--EGGDEIDVLSLLGHDGEEPLRKRKS-GCGALQPTLTID 184
++PK RL ++ CK K C G++ D + L EE RK K+ GCG + P +T +
Sbjct: 127 KNPKRRLNAVVDICKNKKVCAVAKGNQEDQVDDLSKTDEELDRKPKADGCGNVLPKITKE 186
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ + E+K DD VE+K L+AER
Sbjct: 187 ELKFVVEFK---DVQDDT------VEKKSVLSAER 212
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/138 (68%), Positives = 115/138 (83%), Gaps = 4/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADE++ KFK ALKIR+PK+RL++I AC
Sbjct: 1 HLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQALKIRNPKNRLKRIYDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K+K C GGD++DV D +EP++KR GCGA QP +T+DGM M+AE+KA +KK DD
Sbjct: 61 KSKKVCAGGDDLDVQE---QDTDEPIKKR-GGCGAQQPNITVDGMKMVAEFKAPKKKTDD 116
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEPVERKQ L+AER
Sbjct: 117 QDQLPEPVERKQILSAER 134
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 111/138 (80%), Gaps = 4/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGFMKT+LTIMRCVCFNCSKIL D +D KFK + KIR+PK RL+++ AC
Sbjct: 1 HLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDXDDLKFKQSQKIRNPKHRLKRVFDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KCEGGDE+DV G EEP++K + GCGA QP LTI+GM MIAEYK RKKND+
Sbjct: 61 KNKQKCEGGDEMDV---QGQGSEEPVKKSRGGCGAQQPKLTIEGMKMIAEYKGSRKKNDE 117
Query: 202 QGQLPEPVERKQTLTAER 219
+ LPEPVERKQ L+AER
Sbjct: 118 E-PLPEPVERKQQLSAER 134
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 137/220 (62%), Gaps = 10/220 (4%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M F S ++ KV+ VQF ILSPDEIR MSV ++H +T E G P AGGL D +GTI
Sbjct: 1 MAAFFPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
DK +C+TCS M ECPGHFGH+ELAKP+FHIGF+ T+L I+RCVC++CSK+L D +
Sbjct: 61 DKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHS 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCE-GGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
F+ ALKIR+ K RL ++ CK K C GG+E + L D E + GCG + P
Sbjct: 121 FRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLP 180
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T + + +I E+K E +E+K L+AER
Sbjct: 181 KITKEDLKIIVEFKDVTD---------ESIEKKSVLSAER 211
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 115/138 (83%), Gaps = 3/138 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+ +MRC+CFNCSKILADEED KFK A+KI++PK RL +++ AC
Sbjct: 1 HLELAKPMFHIGFLKTVCNLMRCICFNCSKILADEEDHKFKQAVKIKNPKHRLRKVMDAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K+K KCEGGDE+DV G D +EP +K++ GCG+ QP + ++GM +IAE+KA +K++D+
Sbjct: 61 KSKQKCEGGDEMDV---QGQDEDEPXKKKRGGCGSQQPKIAVEGMKIIAEFKAPKKRSDE 117
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEPVERKQ L+AER
Sbjct: 118 QDQLPEPVERKQQLSAER 135
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 113/138 (81%), Gaps = 1/138 (0%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L+IMRCVCFNCSKILADEED KFK ALKIR+PK+RL++IL AC
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHKFKQALKIRNPKNRLKRILEAC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KCEGGD +DV DGE +K + GCGA QPT TI+GM +IAEYK +KK+D+
Sbjct: 61 KNKKKCEGGDSLDVQDQDQDDGESA-KKTRGGCGAQQPTFTIEGMKIIAEYKMTKKKSDE 119
Query: 202 QGQLPEPVERKQTLTAER 219
Q QLPEP ERKQ L+AE+
Sbjct: 120 QEQLPEPAERKQQLSAEK 137
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 95/140 (67%), Positives = 116/140 (82%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGFMKT+L I+RCVCFNCS ILADEED +FK ALKIR+PK+RL+++L C
Sbjct: 1 HLELAKPMFHIGFMKTVLAILRCVCFNCSHILADEEDHRFKQALKIRNPKARLKKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEE-PLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K+K KCEGGD+ID G D E+ P +K++ GCGA+QP +TI+GM +IAEYK RKK+D
Sbjct: 61 KSKQKCEGGDDID--EDQGQDLEDAPKKKKRGGCGAMQPKITIEGMKIIAEYKVPRKKSD 118
Query: 201 DQGQ-LPEPVERKQTLTAER 219
+Q Q LPEPVERKQ L+AER
Sbjct: 119 EQEQMLPEPVERKQQLSAER 138
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 137/221 (61%), Gaps = 11/221 (4%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M F S ++ KV+ VQF ILSPDEIR MSV I+H +T E G P GGL D +GTI
Sbjct: 1 MAAFFPPSSAELRKVKKVQFGILSPDEIRNMSVARIEHPETYENGKPKIGGLLDPAMGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
DK +C+TCS M ECPGHFGH+ELAKP+FHIGF+ T+L I+RCVCF+CSK+L D +
Sbjct: 61 DKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCFHCSKLLTDTSEYS 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCE-GGDEIDVLSLLGHDGEEPLRKRK-SGCGALQ 178
F+ ALKI++ K RL ++ CK K C GG+E + L EE + K GCG +
Sbjct: 121 FRQALKIKNQKHRLNAVVEICKNKKVCAIGGNEEEEEHDLSKTDEELDKAVKHGGCGNVL 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P +T + + +I E+K E +E+K L+AER
Sbjct: 181 PKITKEDLKIIVEFKDVTD---------ESIEKKSVLSAER 212
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/140 (67%), Positives = 112/140 (80%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPM+HIGF+KT+L+I+RCVCFNCS+ILADEED +FK ALKIR+PK RL ++L C
Sbjct: 1 HLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHRFKQALKIRNPKHRLRKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPL-RKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGDEID G DGEE +KR GCGA QP ++IDGM M+AEYK RKK D
Sbjct: 61 KNKTKCEGGDEID--DDQGQDGEEAAKKKRHGGCGAQQPKISIDGMKMVAEYKLPRKKAD 118
Query: 201 DQGQL-PEPVERKQTLTAER 219
+Q QL PEP+ERKQ LTAE+
Sbjct: 119 EQEQLMPEPIERKQQLTAEK 138
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/140 (67%), Positives = 113/140 (80%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L++MRCVCFNCS+ILADEED +FK ALKIR+PK+RL+++L C
Sbjct: 1 HLELAKPMFHIGFLKTVLSVMRCVCFNCSRILADEEDHRFKQALKIRNPKTRLKKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPL-RKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGD+ID D EE + +KR GCGA QP +TI+G M+AEYKA RKKND
Sbjct: 61 KNKTKCEGGDDID--EDQAQDSEEVVKKKRHGGCGAQQPKITIEGTKMVAEYKAPRKKND 118
Query: 201 DQGQ-LPEPVERKQTLTAER 219
+Q Q LPEPVERKQ L AE+
Sbjct: 119 EQEQMLPEPVERKQQLAAEK 138
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 115/140 (82%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIG +KT+LTI+RCVC+NCS+ILADEED +FK A KIR+PK RL ++L C
Sbjct: 1 HLELAKPMFHIGVLKTVLTILRCVCYNCSRILADEEDHRFKQARKIRNPKHRLRRMLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQRKKND 200
KTK+KCEGGD+ID GHD EE +K+K GCGA QP +TIDGM +IAE+KA +KKN+
Sbjct: 61 KTKSKCEGGDDID--EDQGHDNEEAEKKKKHGGCGAQQPKITIDGMKIIAEFKASKKKNE 118
Query: 201 DQGQ-LPEPVERKQTLTAER 219
+Q Q +PEPVERKQ L+AE+
Sbjct: 119 EQDQYMPEPVERKQQLSAEK 138
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/140 (67%), Positives = 113/140 (80%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGFMKT+L+I+RCVCFNCS+ILADEED +FK ALKI++PK RLE+IL C
Sbjct: 1 HLELAKPMFHIGFMKTVLSILRCVCFNCSRILADEEDHRFKQALKIKNPKHRLEKILDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGD I+ G D +E ++K+ GCG+ QP +TIDGM +IAEYKA RKK D
Sbjct: 61 KNKTKCEGGDVIE--DDQGQDVDEEVKKKPHGGCGSQQPKITIDGMKIIAEYKAPRKKAD 118
Query: 201 DQGQL-PEPVERKQTLTAER 219
+Q QL PEPVERKQ L+AER
Sbjct: 119 EQEQLMPEPVERKQQLSAER 138
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 96/208 (46%), Positives = 134/208 (64%), Gaps = 13/208 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ VQF ILSPDEI++MS+ EI+ + E G P GGL D R G +D+R +C TC+ ++
Sbjct: 15 VKRVQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTCAGSLA 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK--IRHPKS 132
+CPGHF H+ELAKP+FHIGF+ L ++RCVCF CS+++ D++ + K LK + +
Sbjct: 75 DCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLKKTAGNARR 134
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-GCGALQPTLTIDGMNMIAE 191
RL I CK+K CEGGDE+ + G DGEE ++ KS GCG QP+ G+++IAE
Sbjct: 135 RLTVIYEICKSKTVCEGGDELHTVG--GEDGEESEKEIKSGGCGRYQPSYKRVGIDIIAE 192
Query: 192 YKAQRKKNDDQGQLPEPVERKQTLTAER 219
+K + N+D ERK LTAER
Sbjct: 193 WK--KHINEDTQ------ERKIVLTAER 212
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 96/208 (46%), Positives = 134/208 (64%), Gaps = 13/208 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ VQF ILSPDEI++MS+ EI+ + E G P GGL D R G +D+R +C TC+ ++
Sbjct: 15 VKRVQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTCAGSLA 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK--IRHPKS 132
+CPGHF H+ELAKP+FHIGF+ L ++RCVCF CS+++ D++ + K LK + +
Sbjct: 75 DCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLKKTAGNARR 134
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-GCGALQPTLTIDGMNMIAE 191
RL I CK+K CEGGDE+ + G DGEE ++ KS GCG QP+ G+++IAE
Sbjct: 135 RLTVIYEICKSKTVCEGGDELHTVG--GEDGEESEKEIKSGGCGRYQPSYKRVGIDIIAE 192
Query: 192 YKAQRKKNDDQGQLPEPVERKQTLTAER 219
+K + N+D ERK LTAER
Sbjct: 193 WK--KHINEDTQ------ERKIVLTAER 212
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 131/209 (62%), Gaps = 13/209 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I + + TE G P GGL D R GTID+ +C+TC+ N
Sbjct: 14 VKKVQFGILSPDEIRRMSVTDGGIRYSEVTEGGRPKLGGLMDPRQGTIDRSARCQTCAGN 73
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
+ ECPGHFGH+ELAKP+FHIGF+ + I+RCVCF CSK+L D + K K L+ +P
Sbjct: 74 ISECPGHFGHIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKIKEILSKSKAYP 133
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
+ RL + CK++ CEGGDE+D L E +K GCG QP + G+ +IA
Sbjct: 134 RKRLVAVYDLCKSRKVCEGGDEMDNAKLGEETQEGDQKKGHGGCGRYQPKIKRTGLELIA 193
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+K N+D E+K LTA+R
Sbjct: 194 EWK---DTNEDSQ------EKKIVLTADR 213
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 95/208 (45%), Positives = 134/208 (64%), Gaps = 13/208 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ VQF ILSPDEI++MS+ EI+ + E G P GGL D R G +D+R +C TC+ ++
Sbjct: 88 VKRVQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTCAGSLA 147
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK--IRHPKS 132
+CPGHF H+ELAKP+FHIGF+ L ++RCVCF CS+++ D++ + K L+ + +
Sbjct: 148 DCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLRKTAGNARR 207
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-GCGALQPTLTIDGMNMIAE 191
RL I CK+K CEGG+E+ + G DGEE R+ KS GCG QP+ G+++IAE
Sbjct: 208 RLAVIYEICKSKTVCEGGNELHAVG--GEDGEESEREIKSGGCGRYQPSYKRVGIDIIAE 265
Query: 192 YKAQRKKNDDQGQLPEPVERKQTLTAER 219
+K + N+D ERK LTAER
Sbjct: 266 WK--KHINEDTQ------ERKIVLTAER 285
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 112/140 (80%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HL LAKPM+HIGF+KT+L+I+RCVCFNCS+ILADE+D +FK ALK+++PK RL+++L C
Sbjct: 1 HLXLAKPMYHIGFLKTVLSILRCVCFNCSRILADEDDHRFKQALKVKNPKHRLKKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPL-RKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGD ID G DG+E + +KR GCGA QP +TIDGM +IAEYKA RKK D
Sbjct: 61 KNKTKCEGGDVID--EDQGQDGDEEVKKKRHGGCGAQQPKITIDGMKIIAEYKAPRKKAD 118
Query: 201 DQGQL-PEPVERKQTLTAER 219
+Q QL PEP ERKQ L+AER
Sbjct: 119 EQEQLMPEPAERKQQLSAER 138
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 112/140 (80%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPM+HIGF+KT+L+I+RCVCFNCS+ILADE+D +FK ALK+++PK RL+++L C
Sbjct: 1 HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEDDHRFKQALKVKNPKHRLKKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPL-RKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGD ID + DG+E + +KR+ GCGA QP + IDGM ++AEYKA RKK D
Sbjct: 61 KNKTKCEGGDAIDEDQV--QDGDEEVKKKRQGGCGAQQPKIYIDGMKIVAEYKAPRKKAD 118
Query: 201 DQGQL-PEPVERKQTLTAER 219
DQ QL PEP ERKQ L AER
Sbjct: 119 DQEQLMPEPAERKQQLPAER 138
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/212 (47%), Positives = 134/212 (63%), Gaps = 20/212 (9%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVIDRHSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + +RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVSPNNPKIKEVVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGALQPTLTIDGMN 187
+ RL + CK KN CEGGDE+DV G +GE+P + +K GCG QP + G++
Sbjct: 133 RKRLAFVYDLCKGKNICEGGDEMDV----GKEGEDPNQAKKQGHGGCGRYQPNIRRTGLD 188
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D ERK L+AER
Sbjct: 189 LTAEWK---HLNEDSQ------ERKIALSAER 211
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats.
Identities = 96/211 (45%), Positives = 132/211 (62%), Gaps = 18/211 (8%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+
Sbjct: 13 QVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAG 72
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + ++RCVCF CSK+L + K K + +K +
Sbjct: 73 NMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNPKIKEVVMKSKGQ 132
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNM 188
P+ RL + CK KN CEGG+++D+ G +GEE R GCG QP++ G+++
Sbjct: 133 PRKRLTYVYDLCKGKNICEGGEDMDI----GKEGEEGKRGTGHGGCGHYQPSIRRQGLDL 188
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K + D +K +TAER
Sbjct: 189 TAEWKHANEDTQD---------KKIIITAER 210
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats.
Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 15/217 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F +S + V+ VQF +LSP+EIR +SV +I++ + + P GL+D RLG+ID+
Sbjct: 4 FPYSSAPLRTVQEVQFGLLSPEEIRAISVAKIEYPEIMDPTTNKPRENGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KF 121
F+C+TCS +M ECPGHFGH+ELAKP+FHIGF+ + + CVC NC KIL DE + +F
Sbjct: 64 NFRCQTCSEDMQECPGHFGHIELAKPVFHIGFVSRIKKVCECVCMNCGKILLDEATNPQF 123
Query: 122 KLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
A+KIR PK R + CKTK CE +D DG + + GCGA QPT+
Sbjct: 124 AAAIKIRDPKKRFNAVWSLCKTKMVCEVDQPVD-------DGSGRTQHLRGGCGASQPTI 176
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
DG+ + +K + +DD G E ER+Q AE
Sbjct: 177 RRDGLKLWGSWK--KSNSDDDG---EQAERRQISAAE 208
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 93/201 (46%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF ILSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGILSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 110/140 (78%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLEL KPM+HIGF+KT+L+I+R VCFNCS+ILADEED +FK ALKI++PK RL ++L C
Sbjct: 1 HLELVKPMYHIGFLKTVLSILRSVCFNCSRILADEEDHRFKQALKIKNPKHRLRKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPL-RKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGDEID DGEE +KR GCGA QP ++IDGM +IAEYKA RKK D
Sbjct: 61 KNKTKCEGGDEID--DDQAQDGEEMTKKKRHGGCGAQQPKISIDGMKIIAEYKATRKKAD 118
Query: 201 DQGQL-PEPVERKQTLTAER 219
+Q QL PEPVERKQ L+AE+
Sbjct: 119 EQEQLMPEPVERKQQLSAEK 138
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA-directed RNA polymerase II subunit
RPB1
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 120/192 (62%), Gaps = 12/192 (6%)
Query: 31 MSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMF 90
MSV I+H +T E G P GGL D +GTIDK KC TCS M ECPGHFGHLELAKP+F
Sbjct: 1 MSVALIEHPETYENGKPKLGGLVDPHMGTIDKHQKCATCSGTMAECPGHFGHLELAKPVF 60
Query: 91 HIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCE-G 149
HIGF+ T+L I+RCVCF+CSK+L D D F+ ALKIR+PK RL IL CKTK C+ G
Sbjct: 61 HIGFIDTVLKIVRCVCFHCSKLLTDTNDSHFRQALKIRNPKRRLNAILDICKTKKVCDIG 120
Query: 150 GDEIDVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
+E D L EE RK S GCG LQP +T + + I E+K E
Sbjct: 121 QEEKDREHDLSKTDEELDRKPHSHGGCGNLQPKITKEELKFIVEFKDVAD---------E 171
Query: 208 PVERKQTLTAER 219
VE+K L+AER
Sbjct: 172 TVEKKSILSAER 183
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 135/211 (63%), Gaps = 15/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I + +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIKYPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEVVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVL--SLLGHDGEEPLRKRKSGCGALQPTLTIDGMNM 188
+ RL + CK KN CEGGDE+DV ++ + E+P ++ GCG QP L G+++
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDVNKENVDDPNKEQPRKQGHGGCGRYQPNLRRVGLDV 192
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K LTAER
Sbjct: 193 TAEWK---HVNEDSQ------EKKINLTAER 214
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 134/210 (63%), Gaps = 18/210 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++L+KP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEVVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP-LRKRKSGCGALQPTLTIDGMNMI 189
+ RL + CK KN CEGGDE+DV G +GE+P R+ GCG QP + G+++
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDV----GKEGEDPGKRQGHGGCGRYQPNIRRAGLDLT 188
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K L+AER
Sbjct: 189 AEWK---HVNEDSQ------EKKIPLSAER 209
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 111/140 (79%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPM+HIGFMKT+L+I+R VCF+CS+ILADEED +FK ALKI++PK RL ++L C
Sbjct: 1 HLELAKPMYHIGFMKTVLSILRSVCFDCSRILADEEDHRFKQALKIKNPKHRLRKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPL-RKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGDEI+ DGEE +KR GCGA QP ++IDGM +IAEYKA RKK D
Sbjct: 61 KNKVKCEGGDEIE--DDQAQDGEETAKKKRHGGCGAQQPKISIDGMKIIAEYKATRKKAD 118
Query: 201 DQGQL-PEPVERKQTLTAER 219
+Q QL PEPVERKQ L+AE+
Sbjct: 119 EQEQLMPEPVERKQQLSAEK 138
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 134/211 (63%), Gaps = 16/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPHNPKIKEVIMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR--KSGCGALQPTLTIDGMNM 188
+ RL I CK+KN CEGGDE+D+ + + + P+ ++ GCG QP L G+++
Sbjct: 133 RKRLTHIYDLCKSKNICEGGDEMDI-NKENSENQPPVERKPGHGGCGRYQPNLRRSGLDV 191
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K LTAER
Sbjct: 192 TAEWK---HVNEDSQ------EKKIVLTAER 213
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 112/140 (80%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPM+HIGF+KT+L+I+RCVCFNCS+ILADEED +FK A+K+++PK RL+++L C
Sbjct: 1 HLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHRFKQAMKVKNPKHRLKRVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K K KCEGGD I+ D +E ++K+ GCG+ QP +TIDGM +IAEY+A RKK D
Sbjct: 61 KNKTKCEGGDSIE--EDQAQDADEEVKKKPHGGCGSQQPKITIDGMKIIAEYRAPRKKAD 118
Query: 201 DQGQL-PEPVERKQTLTAER 219
+Q QL PEPVERKQ LTAER
Sbjct: 119 EQDQLMPEPVERKQQLTAER 138
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
anubis]
Length = 1970
Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 91/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K L+ P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 130/210 (61%), Gaps = 14/210 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRHSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L K K + +K + P
Sbjct: 73 MSECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMI 189
+ RL + CK KN CEGGDE+D+ D P RK+ GCG QP L G+++
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDLNKENIEDPNNPQRKQGHGGCGRYQPNLRRTGLDVT 192
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K L+AER
Sbjct: 193 AEWK---HANEDSQ------EKKIALSAER 213
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 97/219 (44%), Positives = 137/219 (62%), Gaps = 16/219 (7%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPT 180
+ +K + P+ RL + CK K CEGG+++D+ G+ +P +K GCG QP+
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDITK--GNQQPDPNKKPGHGGCGHYQPS 182
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 183 IRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>gi|152060506|sp|A5DCV3.2|RPB1_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
Length = 1579
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 90/209 (43%), Positives = 127/209 (60%), Gaps = 9/209 (4%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPHSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TC +M ECPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE +
Sbjct: 61 SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A++IR PK R + CK K CE DVL G +G EP R + GCG Q
Sbjct: 121 PAMAQAIRIRDPKKRFNAVWNLCKGKMICEA----DVLQDDG-EGNEPKRTSRGGCGHTQ 175
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P + DG+ + +K + KN D+ + PE
Sbjct: 176 PVVRKDGLKLWGTWK--QNKNYDETEQPE 202
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 135/217 (62%), Gaps = 25/217 (11%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVIDRHSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + +RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVSPNNPKIKEVVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP------LRKRK--SGCGALQPTLT 182
+ RL + CK KN CEGGDE+DV G +GE+P L K++ GCG QP +
Sbjct: 133 RKRLAFVYDLCKGKNICEGGDEMDV----GKEGEDPNQEFGFLAKKQGHGGCGRYQPNIR 188
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K N+D ERK L+AER
Sbjct: 189 RTGLDLTAEWK---HLNEDSQ------ERKIALSAER 216
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 9/205 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F +S + V VQF +LSP+E++ MSV +I+ +T + R P GGL+D RLGTID+
Sbjct: 6 FPYSSAPLRTVEEVQFGLLSPEEVKAMSVAKIEFPETMDETRQRPRVGGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELAKP+FHIGF+ + I VCF+C K+L DE + +F
Sbjct: 66 NFKCQTCGEGMAECPGHFGHIELAKPVFHIGFIAKIKKICESVCFHCGKVLLDENNKQFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++IR PK R + CKTK C E DV + DG ++ GCG +QPT+
Sbjct: 126 QAIRIRDPKRRFNAVWSLCKTKMVC----ETDVPT--EDDGSGVVKHSHGGCGNIQPTVR 179
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPE 207
DG+ + +K + K DD G PE
Sbjct: 180 RDGLKLWGTWK-RGKNGDDMGDSPE 203
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K L P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILGKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 95/215 (44%), Positives = 124/215 (57%), Gaps = 21/215 (9%)
Query: 1 MENCFTFSPFKVA--KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLR 56
M F+P +V VQF ILSP+EIR MSV +I++ + + P GGL D R
Sbjct: 1 MSGDLAFAPSSAVLRQVEEVQFGILSPEEIRAMSVAKIEYPEIMDESGHRPRIGGLLDPR 60
Query: 57 LGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
LGTID+ FKC+TC +M ECPGHFGH+ELAKP+FHIGF+ + I+ CVC NC K+ ADE
Sbjct: 61 LGTIDRNFKCQTCGESMAECPGHFGHIELAKPVFHIGFLMKIKKILECVCLNCGKLKADE 120
Query: 117 EDDKFKLALKIRHPKSRLEQILCACKTKNKCE----GGDEIDVLSLLGHDGEEPLRKRKS 172
KF + + R PKSRL + CKTK CE D + S++GH
Sbjct: 121 NSPKFLESQRYRDPKSRLIAVWNICKTKMICEIDQPVNDHYEAKSMIGH----------G 170
Query: 173 GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
GCG LQP + DG+ + A YK + D + LP+
Sbjct: 171 GCGNLQPIIRKDGLKLWATYK---RPKDSESDLPD 202
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 131/211 (62%), Gaps = 15/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I + +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIQYPETMEGGRPKLGGLMDPRQGVVDRMSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+ H+GF+ + ++RCVCF CSK+L K K + +K + P
Sbjct: 73 MSECPGHFGHIDLAKPVLHVGFITKTIKVLRCVCFYCSKLLVSPSHPKVKEIVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG--EEPLRKRKSGCGALQPTLTIDGMNM 188
+ RL I CK KN CEGGDEID+ D E+P ++ GCG QP + G+++
Sbjct: 133 RKRLAFIYDLCKGKNICEGGDEIDIAKENPDDPSREQPKKQGHGGCGRYQPNIRRAGLDL 192
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K LTAER
Sbjct: 193 TAEWK---HVNEDSQ------EKKIPLTAER 214
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 128/213 (60%), Gaps = 21/213 (9%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I + + E G P GGL D R G ID+ +C+TC+ N
Sbjct: 15 VKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGVIDRSARCQTCAGN 74
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH++LAKP++HIGF++ + I+RCVCF CSK+L + K K L P
Sbjct: 75 MNECPGHFGHIDLAKPVYHIGFIQKTMKILRCVCFYCSKLLVSPNNPKIKEILVKSKGQP 134
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK----SGCGALQPTLTIDGM 186
+ R+ + CK KN CEGGDEID+ G D + +K GCG QPT+ G+
Sbjct: 135 RKRMAHVYDLCKGKNICEGGDEIDI----GKDEDISKEGKKGIGHGGCGRYQPTIRRQGL 190
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
M E+K N+D E+K LTAER
Sbjct: 191 EMTGEWK---HVNEDSQ------EKKIVLTAER 214
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 134/211 (63%), Gaps = 18/211 (8%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+
Sbjct: 8 QVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNARCQTCAG 67
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 68 NMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPKIKEVVMKSKGQ 127
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNM 188
P+ RL + CK KN CEGG+++D+ G +GEE R GCG QP++ G+++
Sbjct: 128 PRKRLTYVYDLCKGKNICEGGEDMDI----GKEGEEGKRGSGHGGCGHYQPSIRRQGLDL 183
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K +TAER
Sbjct: 184 TAEWK---HANEDTQ------EKKIIITAER 205
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 132/211 (62%), Gaps = 14/211 (6%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+
Sbjct: 12 QVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRMSRCQTCAG 71
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L K K + LK +
Sbjct: 72 NMSECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPSHPKIKEIVLKSKGQ 131
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNM 188
P+ RL + CK KN CEGGDE+D+ DG RK GCG QP L G+ +
Sbjct: 132 PRKRLTFVYDLCKGKNICEGGDEMDIQKDGMDDGGASNRKPGHGGCGRYQPNLRRTGLEV 191
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D GQ E+K +L+AER
Sbjct: 192 TAEWK---HVNED-GQ-----EKKISLSAER 213
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 134/212 (63%), Gaps = 20/212 (9%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVIDRHSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPNNPKIKEVVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGALQPTLTIDGMN 187
+ RL + CK KN CEGGDE+DV + EE + +K GCG QP + G++
Sbjct: 133 RKRLAFVYDLCKGKNICEGGDEMDV----NKENEENVPGKKQGHGGCGRYQPNIKRTGLD 188
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++AE+K N+D E+K +L+AER
Sbjct: 189 LVAEWK---HINEDSQ------EKKISLSAER 211
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 96/207 (46%), Positives = 128/207 (61%), Gaps = 11/207 (5%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ VQF ILSPDEI++MSV EI+ + E G P GGL D R G +D+R +C TC+ N+
Sbjct: 15 VKRVQFGILSPDEIKRMSVGEIEFSEIYENGKPKMGGLMDPRQGVVDRRGRCMTCAGNLA 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK--IRHPKS 132
+CPGHF HLELAKP+FHIGF+ L I+RCVCF CS++L D++ + K LK + +P+
Sbjct: 75 DCPGHFAHLELAKPVFHIGFITKTLKILRCVCFYCSRLLIDKDAPRVKEILKKTVGNPRR 134
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
RL I CK+K+ CEGGDE+ + E + GCG QP+ G+ + AE+
Sbjct: 135 RLALIYDLCKSKSVCEGGDELQNVGGE-EGEEGEKEVKAGGCGRYQPSYRRTGIEINAEW 193
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
K R N+D ERK LTAER
Sbjct: 194 K--RHVNEDTQ------ERKIVLTAER 212
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 110/140 (78%), Gaps = 4/140 (2%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPMFHIGF+KT+L+IMR VCFNCS ILAD+ED +FK ALKIR+PK RL ++L C
Sbjct: 1 HLELAKPMFHIGFLKTVLSIMRSVCFNCSHILADQEDHRFKQALKIRNPKHRLRKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
K+K KCEGGD+ID D E+ ++K+ GCGA QP +T++GM MIAE+K RKK+D
Sbjct: 61 KSKQKCEGGDDID--EDQAQDSEDGVKKKGHGGCGAQQPKITVEGMKMIAEFKQTRKKSD 118
Query: 201 DQGQ-LPEPVERKQTLTAER 219
+Q Q LPEP ERKQ L+AER
Sbjct: 119 EQEQMLPEPAERKQQLSAER 138
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 132/213 (61%), Gaps = 17/213 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
VR VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 14 VRRVQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 73
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH+EL+KP+FH+GF+K + I+RCVCF CSK+L + K K + +K + P
Sbjct: 74 MTECPGHFGHIELSKPVFHVGFIKQTIKILRCVCFYCSKMLVSPTNPKIKEIVMKTKGQP 133
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK----SGCGALQPTLTIDGM 186
+ RL + CK KN CEGGDE+D+ + ++P K GCG QP + G+
Sbjct: 134 RKRLTFVYDLCKGKNICEGGDEMDLAKDPERNPDDPGGPNKKQGHGGCGRYQPNIRRAGL 193
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K L+AER
Sbjct: 194 DLSAEWK---HANEDTQ------EKKIALSAER 217
>gi|402586258|gb|EJW80196.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 400
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/208 (45%), Positives = 134/208 (64%), Gaps = 13/208 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ VQF ILSPDEI++MS+ EI+ + E G P GGL D R G +D+R +C TC+ ++
Sbjct: 15 VKRVQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTCAGSLA 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK--IRHPKS 132
+CPGHF H+ELAKP+FHIGF+ L ++RCVCF CS+++ D++ + K L+ + +
Sbjct: 75 DCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLRKTAGNARR 134
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-GCGALQPTLTIDGMNMIAE 191
RL I CK+K CEGG+E+ + G DGEE ++ KS GCG QP+ G+++IAE
Sbjct: 135 RLAVIYEICKSKTVCEGGNELHAIG--GEDGEESEKEIKSGGCGRYQPSYKRIGIDIIAE 192
Query: 192 YKAQRKKNDDQGQLPEPVERKQTLTAER 219
+K + N+D ERK LTAER
Sbjct: 193 WK--KHINEDTQ------ERKIVLTAER 212
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 131/209 (62%), Gaps = 13/209 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF I+SPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGIISPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
+ RL + CK+KN CEGGDE+D+ + + + GCG QP L G+++ A
Sbjct: 133 RKRLAFVYDLCKSKNICEGGDEMDINKENTENQPQDRKPGHGGCGRYQPNLRRSGLDVTA 192
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+K N+D E+K L+AER
Sbjct: 193 EWK---HVNEDSQ------EKKTILSAER 212
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 132/212 (62%), Gaps = 14/212 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC
Sbjct: 10 IRTVKRVQFGILSPDEIRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRNSRCQTC 69
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM ECPGHFGH++LAKP+FH GF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 70 AGNMTECPGHFGHIDLAKPVFHCGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIIMKTK 129
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
P+ RL + CK+KN CEGGDE+D+ + G + + + GCG QP L G++
Sbjct: 130 GQPRKRLTFVYDLCKSKNICEGGDEMDI-TKEGQEQDPNKKPGHGGCGRYQPNLRRSGLD 188
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K LTAER
Sbjct: 189 VTAEWK---HVNEDSQ------EKKIALTAER 211
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 131/213 (61%), Gaps = 14/213 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ V+ VQF ILSPDEIR+MSVTE I + +T E G P GGL D R G ID+ +C+TC
Sbjct: 9 IRSVKKVQFGILSPDEIRRMSVTEGGIRYAETMEGGRPKLGGLMDPRQGVIDRNSRCQTC 68
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM ECPGHFGH++L KP+FHIGF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 69 AGNMSECPGHFGHIDLCKPVFHIGFIVKTIKILRCVCFYCSKLLVSPTNPKIKEIVMKSK 128
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLL-GHDGEEPLRKRKSGCGALQPTLTIDGM 186
P+ RL + CK KN CEGGDE+D+ G R GCG QP++ G+
Sbjct: 129 GQPRKRLVFVYDLCKGKNICEGGDEMDIAKEEDAAAGRSAARPTHGGCGRYQPSIRRTGL 188
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K +LTAER
Sbjct: 189 DLSAEWK---HINEDSQ------EKKISLTAER 212
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 135/214 (63%), Gaps = 19/214 (8%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE I + + E G P GGL D R G ID+ +C+TC+
Sbjct: 15 EVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 74
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FH GF+ + I+RCVCF CSK+L + + K K + K +
Sbjct: 75 NMTECPGHFGHIDLAKPVFHCGFLTKTIKILRCVCFYCSKLLVNPNNPKIKEIVGKTKGQ 134
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG--EEPLRKRK--SGCGALQPTLTIDG 185
P+ RL + CK KN CEGGDEID + LG D +E K++ GCG QP++ G
Sbjct: 135 PRKRLAHVYDLCKGKNICEGGDEID--TKLGPDSQVQEDTNKKQGHGGCGRYQPSIRRSG 192
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+++ AE+K N+D E+K LTAER
Sbjct: 193 LDLTAEWK---HINEDSQ------EKKIALTAER 217
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 88/200 (44%), Positives = 125/200 (62%), Gaps = 6/200 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 16 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGN 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++RCVCF CSK+L D + K K L P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQP 135
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMNM 188
+ RL + CK KN CEGG+E+D + E + K K GCG QP + G+ +
Sbjct: 136 RKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLEL 195
Query: 189 IAEYKAQRKKNDDQGQLPEP 208
AE+K + + ++ L P
Sbjct: 196 YAEWKHVNEDSQEKKILLSP 215
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila
guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L D ++P +K GCG Q
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLSAEWK---HPNEDSQ------EKKIVVSAER 212
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 132/210 (62%), Gaps = 15/210 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVGPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMI 189
+ RL + CK+KN CEGGDE+D+ + D + RK GCG QP L G+++
Sbjct: 133 RKRLTFVYDLCKSKNICEGGDEMDI-NKENQDQQNTDRKPGHGGCGRYQPNLQRSGLDVT 191
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K LTAER
Sbjct: 192 AEWK---HVNEDSQ------EKKIALTAER 212
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L D ++P +K GCG Q
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLSAEWK---HPNEDSQ------EKKIVVSAER 212
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L D ++P +K GCG Q
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLSAEWK---HPNEDSQ------EKKIVVSAER 212
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 135/214 (63%), Gaps = 15/214 (7%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
V V+ VQF ILSPDEIR+MSVTE I + +T E G P GGL D R G +D+ +C+TC
Sbjct: 10 VRYVKRVQFGILSPDEIRRMSVTEGGIRYSETYEGGRPKLGGLMDPRQGVMDRNSRCQTC 69
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ N ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 70 AGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPKIKEVVMKSK 129
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGALQPTLTIDG 185
P+ RL + CK KN CEGGDE+D+ D ++P ++ GCG QP++ G
Sbjct: 130 GQPRKRLTYVYDLCKGKNICEGGDEMDLNKDNPDDPNNQQPRKQGHGGCGRYQPSIRRAG 189
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+++ AE+K N+D E+K +L+AER
Sbjct: 190 LDLTAEWK---HVNEDSQ------EKKISLSAER 214
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L D ++P +K GCG Q
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLSAEWK---HPNEDSQ------EKKIVVSAER 212
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 132/212 (62%), Gaps = 19/212 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMN 187
+ RL + CK+KN CEGGDE+D+ + E+ RK GCG QP L G++
Sbjct: 133 RKRLTFVYDLCKSKNICEGGDEMDINK---ENSEQQPTDRKPGHGGCGRYQPNLRRSGLD 189
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K LTAER
Sbjct: 190 VTAEWK---HVNEDSQ------EKKIVLTAER 212
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 91/208 (43%), Positives = 128/208 (61%), Gaps = 12/208 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S V KVR VQF ILSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPVRKVREVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKMGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC ++ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADSSDPAF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A +IRH PK+R++ + CK+K CE + D G D +EP +K GCGA QP
Sbjct: 125 -ADRIRHVRDPKARMQAVWNYCKSKMICEPDEPKDENE--GGDQDEP-KKGHGGCGAQQP 180
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
+ +G+ + +YK R K++D+ P+
Sbjct: 181 LIRKEGLKLFVQYK--RGKDEDESLQPD 206
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 133/212 (62%), Gaps = 18/212 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMN 187
+ RL + CK+KN CEGGDE+D+ + +P RK GCG QP L G++
Sbjct: 133 RKRLAFVYDLCKSKNICEGGDEMDINKENAEN--QPQMDRKPGHGGCGRYQPNLRRSGLD 190
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K L+AER
Sbjct: 191 VTAEWK---HVNEDSQ------EKKIILSAER 213
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 97/215 (45%), Positives = 133/215 (61%), Gaps = 20/215 (9%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ V+ VQF ILSPDEIR+MSVTE I + +T E G P GL D R G I++ +C+TC
Sbjct: 9 IRTVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTC 68
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 69 AGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVSPSNPKIKEIVIKSK 128
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGALQPTLTID 184
P+ RL + CK K CEGG+++D+ DG P +K GCG QP+L
Sbjct: 129 GQPRKRLAYVYDLCKGKKICEGGEDMDITK----DGAPPDPNKKQGHGGCGHYQPSLRRT 184
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++IAE+K + D Q E+K +TAER
Sbjct: 185 GLDVIAEWKTVNE--DSQ-------EKKIAVTAER 210
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 128/214 (59%), Gaps = 15/214 (7%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
V V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC
Sbjct: 8 VRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC 67
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKI 127
+ N ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + + K LA
Sbjct: 68 AGNQTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPRIKEVLAKSK 127
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK--SGCGALQPTLTIDG 185
P+ RL + CK KN CEGGDE+D+ D +++ GCG QP + G
Sbjct: 128 GQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPSTQQNRKQGHGGCGRYQPNIRRSG 187
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+++ AE+K + N E+K +LTAER
Sbjct: 188 LDLTAEWKHVNEDNQ---------EKKISLTAER 212
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L D ++P +K GCG Q
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLSAEWK---HPNEDSQ------EKKIVVSAER 212
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 127/209 (60%), Gaps = 8/209 (3%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I+ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRAVKEVQFGLLSPEEVRAISVAKIEFPETIDQTTKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TCS +M ECPGHFGH+ELAKP+FHIGF+ + + C+C +C K+L DE +
Sbjct: 61 SIDRNFKCQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CK K CE DVLS P+ + + GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKAKMICEA----DVLSNENDPNSAPVTQGRGGCGHTQ 176
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K + KN ++ + PE
Sbjct: 177 PTIRRDGLKLWGTWK--QNKNFEENEQPE 203
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 132/211 (62%), Gaps = 15/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF IL+PDEIR+MSVTE I +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 13 VKRVQFGILAPDEIRRMSVTEGGIRFSETYEGGRPKLGGLMDPRQGVMDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPKIKEVVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGALQPTLTIDGMNM 188
+ RL + CK KN CEGGDE+D++ D ++P + GCG QP + G+++
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDIMKENPDDPNQQQPRKAGHGGCGRYQPNIRRAGLDL 192
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K L+AER
Sbjct: 193 TAEWK---HVNEDSQ------EKKIALSAER 214
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 128/209 (61%), Gaps = 8/209 (3%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRAVKEVQFGLLSPEEVRAISVAKVEFPETIDQTTKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TCS +M ECPGHFGH+ELAKP+FHIGF+ + + C+C +C K+L DE +
Sbjct: 61 SIDRNFKCQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CK+K CE DVLS P+ + + GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKSKMICEA----DVLSNENDPNSAPVTQGRGGCGHTQ 176
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K + KN ++ + PE
Sbjct: 177 PTIRRDGLKLWGTWK--QNKNFEENEQPE 203
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 132/212 (62%), Gaps = 19/212 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMN 187
+ RL + CK+KN CEGGDE+D+ + E+ +RK GCG QP L G++
Sbjct: 133 RKRLTFVYDLCKSKNICEGGDEMDINK---ENQEQQSAERKPGHGGCGRYQPNLRRSGLD 189
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+ N+D E+K LTAER
Sbjct: 190 VTAEWT---HVNEDSQ------EKKMALTAER 212
>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
Length = 1092
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 98/213 (46%), Positives = 132/213 (61%), Gaps = 16/213 (7%)
Query: 14 KVRMVQFSILS-PDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+V+ VQF ILS PDEIR+MSVT+ I + + E G P GGL D R G ID+ +C+TC+
Sbjct: 17 EVKRVQFGILSKPDEIRRMSVTDGGIKYPEIYEGGRPKLGGLMDPRQGVIDRTSRCQTCA 76
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR- 128
+M ECPGHFGH+ELAKP+FH GF+ + I+RCVCF CSK+L + K K + K R
Sbjct: 77 GSMTECPGHFGHIELAKPVFHCGFLTKTIKILRCVCFYCSKLLVSPNNPKIKEIVAKTRG 136
Query: 129 HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGM 186
P+ +L + CK KN CEGGDEID + + G E K++ GCG QP++ G+
Sbjct: 137 QPRKQLSFVYDLCKGKNICEGGDEIDTKMGVENQGAEEAAKKQGHGGCGRYQPSIRRSGL 196
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K LTAER
Sbjct: 197 DLTAEWK---HVNEDSQ------EKKVVLTAER 220
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF I+SPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 16 IKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++RCVCF CSK+L D + K K LA P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 135
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
+ RL + CK KN CEGG+E+D + + EE L K K GCG QP + G+
Sbjct: 136 RKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDLTKEKGHGGCGRYQPRIKRSGLE 195
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 196 LYAEWK 201
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWK---HPNEDSQ------EKKIVVSAER 212
>gi|146423609|ref|XP_001487731.1| hypothetical protein PGUG_01108 [Meyerozyma guilliermondii ATCC
6260]
gi|146388852|gb|EDK37010.1| hypothetical protein PGUG_01108 [Meyerozyma guilliermondii ATCC
6260]
Length = 329
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 127/209 (60%), Gaps = 9/209 (4%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPHSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TC +M ECPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE +
Sbjct: 61 SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A++IR PK R + CK K CE DVL G +G EP R + GCG Q
Sbjct: 121 PAMAQAIRIRDPKKRFNAVWNLCKGKMICEA----DVLQDDG-EGNEPKRTSRGGCGHTQ 175
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P + DG+ + +K + KN D+ + PE
Sbjct: 176 PVVRKDGLKLWGTWK--QNKNYDETEQPE 202
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
catus]
Length = 1817
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLAKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF ILSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 17 IKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 76
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 77 MTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 136
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E + K K GCG QP + G+
Sbjct: 137 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDITKEKGHGGCGRYQPRIRRSGLE 196
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 197 LYAEWK 202
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 130/228 (57%), Gaps = 25/228 (10%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTE---IDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
SP + V+ VQF ILSPDEI++MSVT + + +T E G P GL D R GTID+
Sbjct: 7 SPAPLRDVKRVQFGILSPDEIKQMSVTTDGGVKYSETMEGGRPKLNGLMDPRQGTIDRFS 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
+C+TC+ NM ECPGHFGH+ELAKP+FH+GFM ++ +RCVCF CSK+L D + + K
Sbjct: 67 RCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVCFYCSKLLVDLNNPRVKEI 126
Query: 125 LKIRH--PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK-----------RK 171
L H P+ R+ + CK KN CEGGDE+D L + E +K
Sbjct: 127 LSKSHGQPRKRMMHMYDLCKGKNICEGGDEVDAGVLAQDNPNEAEKKLVRIYLPNAYCNH 186
Query: 172 SGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
GCG QP + + AE+K N+D E+K TLTAER
Sbjct: 187 GGCGRYQPKFRKTALELTAEWK---HVNEDAN------EKKITLTAER 225
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats.
Identities = 97/212 (45%), Positives = 132/212 (62%), Gaps = 20/212 (9%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I + +T E G P GL D R G I++ +C+TC+ N
Sbjct: 12 VKKVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTCAGN 71
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 72 MTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVAPSNPKIKEIVMKSKGQP 131
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGALQPTLTIDGMN 187
+ RL + CK K CEGG+++D+ DG P +K GCG QP+L G++
Sbjct: 132 RKRLAYVYDLCKGKKICEGGEDMDITK----DGAAPDPNKKQGHGGCGHYQPSLRRTGLD 187
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+IAE+K N+D E+K +TAER
Sbjct: 188 VIAEWK---HVNEDSQ------EKKIAVTAER 210
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 138/221 (62%), Gaps = 24/221 (10%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFK 65
+P +V V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +
Sbjct: 8 APIRV--VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LA 124
C+TC+ NM ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K +
Sbjct: 66 CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVSPHNPKIKEVV 125
Query: 125 LKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK--RK---SGCGALQ 178
+K + P+ RL + CK+KN CEGGDE+D+ +G+E + RK GCG Q
Sbjct: 126 MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDI----NKEGQEQPQAADRKPGHGGCGRYQ 181
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P L G+++ AE+K N+D E+K LTAER
Sbjct: 182 PNLRRSGLDVSAEWK---HVNEDSQ------EKKIVLTAER 213
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats.
Identities = 89/203 (43%), Positives = 122/203 (60%), Gaps = 11/203 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + +V VQF ILSP+EI+ SV +I+ + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPIKRVAEVQFGILSPEEIKAYSVAKIEFPEVMDETTHKPKMGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPNF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A KIRH PK R+ + CK K CE D + G DGEEP++K GCG QP
Sbjct: 125 -ADKIRHVRDPKKRMAVVWGHCKGKMVCEADDPKEEGD--GQDGEEPVKKGHGGCGHHQP 181
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQ 202
+ +G+ + +YK + K+DD+
Sbjct: 182 LIRKEGLKLFVQYK--KSKDDDE 202
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 132/212 (62%), Gaps = 19/212 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMN 187
+ RL + CK+KN CEGGDE+D+ + E+ +RK GCG QP L G++
Sbjct: 133 RKRLTFVYDLCKSKNICEGGDEMDINK---ENQEQQSIERKPGHGGCGRYQPNLRRSGLD 189
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+ N+D E+K LTAER
Sbjct: 190 VTAEWT---HVNEDSQ------EKKMALTAER 212
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats.
Identities = 94/221 (42%), Positives = 135/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHFQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K + + E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKQVAEASQ---------EKKIIVSAER 212
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/212 (46%), Positives = 132/212 (62%), Gaps = 19/212 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMN 187
+ RL + CK+KN CEGGDE+D+ + E+ +RK GCG QP L G++
Sbjct: 133 RKRLTFVYDLCKSKNICEGGDEMDINK---ENQEQQSIERKPGHGGCGRYQPNLRRSGLD 189
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+ N+D E+K LTAER
Sbjct: 190 VTAEWT---HVNEDSQ------EKKMALTAER 212
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 129/211 (61%), Gaps = 15/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I + +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIKYPETYEGGRPKIGGLMDPRQGVVDRMSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + K R P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFFCSKLLVSPNNAKIKEIVTKSRGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR--KSGCGALQPTLTIDGMNM 188
+ RL + CK KN CEGGDE+D+ + + K+ GCG QP + G+++
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDITKDNADNPDNSKDKKGGHGGCGRYQPNIRRTGLDL 192
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K + N E+K L+AER
Sbjct: 193 TAEWKHTNEDNQ---------EKKIALSAER 214
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats.
Identities = 89/204 (43%), Positives = 126/204 (61%), Gaps = 14/204 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KV+ VQF ILSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKLGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADSSDVNFA 125
Query: 123 LALK-IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG---EEPLRKRKSGCGALQ 178
++ IR PK+R++ + CKTK CE + D HDG +EP +K GCGA Q
Sbjct: 126 DRIRHIRDPKARMQAVWNFCKTKMVCEPDEPKD-----EHDGMENDEP-KKGHGGCGAAQ 179
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQ 202
P + +G+ + +YK R K++D+
Sbjct: 180 PLVRKEGLKLFVQYK--RSKDEDE 201
>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
Length = 1150
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQ---NEDSQ------EKKIVVSAER 212
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 15/222 (6%)
Query: 4 CFTFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTID 61
T S V V+ VQF IL+PDEIR+MSVTE I +T E G P GGL D R G ID
Sbjct: 2 AMTDSKAPVRSVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVID 61
Query: 62 KRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF 121
+ +C+TC+ N ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K
Sbjct: 62 RNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPKI 121
Query: 122 K-LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGAL 177
K + +K + P+ RL + CK KN CEGGDE+D+ D ++P + GCG
Sbjct: 122 KEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGRY 181
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
QP++ G+++ AE+K N+D E+K +L+AER
Sbjct: 182 QPSIRRVGLDLTAEWK---HVNEDSQ------EKKISLSAER 214
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K L+ P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|45501363|gb|AAH67295.1| POLR2A protein [Homo sapiens]
Length = 566
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/186 (48%), Positives = 122/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
mulatta]
Length = 1658
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K L+ P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|344237791|gb|EGV93894.1| DNA-directed RNA polymerase II subunit RPB1 [Cricetulus griseus]
Length = 617
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 131/211 (62%), Gaps = 15/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVMDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 QTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGALQPTLTIDGMNM 188
+ RL + CK KN CEGGDE+D+ D ++P + GCG QP++ G+++
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDIQKENADDPNNQQPRKVGHGGCGRYQPSIRRSGLDL 192
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K L+AER
Sbjct: 193 TAEWK---HVNEDSQ------EKKIALSAER 214
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K L+ P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 121/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K L P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILGKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 127/209 (60%), Gaps = 14/209 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEI++MSVTE I + + E G P GL D R G ID+ +C+TC+ N
Sbjct: 18 VKRVQFGILSPDEIKRMSVTEGGIRYSEMMEGGRPKLCGLMDPRQGVIDRSARCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--HP 130
M ECPGHFGH+ELAKP++HIGF+ + IMRCVCF CSK+L +D + K + P
Sbjct: 78 MAECPGHFGHIELAKPVYHIGFLTKTIKIMRCVCFFCSKLLVSPDDPRIKDIVNKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
K RL + CK K CEGGDE+D + +G+E K GCG QP + G+++ A
Sbjct: 138 KKRLTHVYDLCKGKMICEGGDEVDA-DVGPEEGKEEKPKGHGGCGRYQPQIRRAGLDLTA 196
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+K N+D ERK L+AER
Sbjct: 197 EWK---HVNEDSQ------ERKIQLSAER 216
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/139 (64%), Positives = 109/139 (78%), Gaps = 2/139 (1%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPM+HIGF+KT+L+I+RCVCFNCS+ILADE+D +FK ALK+++PK RL+++L C
Sbjct: 1 HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEDDHRFKQALKVKNPKHRLKKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KCEGGD ID D E +KR+ GCGA QP + IDGM +IAEYKA RKK DD
Sbjct: 61 KNKTKCEGGDVIDEDQGQDGDDEVK-KKRQGGCGAQQPKIYIDGMKIIAEYKAPRKKADD 119
Query: 202 QGQL-PEPVERKQTLTAER 219
QL PEPVERKQ L+AER
Sbjct: 120 PEQLMPEPVERKQQLSAER 138
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 121/186 (65%), Gaps = 7/186 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K L P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILGKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLE 197
Query: 188 MIAEYK 193
+ AE+K
Sbjct: 198 LYAEWK 203
>gi|158321|gb|AAA28863.1| large subunit of RNA polymerase II, partial [Drosophila
melanogaster]
Length = 471
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQ---NEDSQ------EKKIVVSAER 212
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 132/212 (62%), Gaps = 18/212 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMN 187
+ RL + CK+K+ CEGGDE+D+ + +P RK GCG QP L G++
Sbjct: 133 RKRLAFVYDLCKSKSICEGGDEMDINKENAEN--QPQMDRKPGHGGCGRYQPNLRRSGLD 190
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K L+AER
Sbjct: 191 VTAEWK---HVNEDSQ------EKKMILSAER 213
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 133/214 (62%), Gaps = 15/214 (7%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
V V+ VQF IL+PDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC
Sbjct: 10 VRSVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVIDRNSRCQTC 69
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ N ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 70 AGNQTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVVMKSK 129
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGALQPTLTIDG 185
P+ RL + CK KN CEGGDE+D+ D ++P + GCG QP++ G
Sbjct: 130 GQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGRYQPSIRRIG 189
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+++ AE+K N+D E+K +L+AER
Sbjct: 190 LDLTAEWK---HINEDSQ------EKKISLSAER 214
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/139 (64%), Positives = 108/139 (77%), Gaps = 2/139 (1%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
HLELAKPM+HIGF+KT+L+I+RCVCFNCS+ILADEED +FK ALK+++PK RL ++L C
Sbjct: 1 HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEEDHRFKQALKVKNPKHRLRKVLDCC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDD 201
K K KCEGGD ID D E +KR+ GCGA QP + IDGM ++AEYKA RKK DD
Sbjct: 61 KNKTKCEGGDVIDEDQGQDGDDEVK-KKRQGGCGAQQPKIYIDGMKIMAEYKAPRKKADD 119
Query: 202 QGQL-PEPVERKQTLTAER 219
QL PEPVERKQ L+AER
Sbjct: 120 PEQLMPEPVERKQQLSAER 138
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 130/210 (61%), Gaps = 14/210 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 14 VKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRLSRCQTCAGN 73
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP++HIGF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 74 MTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVSPSNPKIKEIVMKSKGQP 133
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHD-GEEPLRKRKSGCGALQPTLTIDGMNMI 189
+ R + CK KN CEGGDE+D+ D +P R GCG QP++ G+++
Sbjct: 134 RKRFAFVYDLCKGKNICEGGDEMDIQKDNPDDPANQPKRSGHGGCGRYQPSIRRIGLDLT 193
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K L+AER
Sbjct: 194 AEWK---HVNEDSQ------EKKINLSAER 214
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 96/221 (43%), Positives = 135/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPNNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L D ++ +K GCG Q
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LAKDNQQVDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWK---HVNEDSQ------EKKIIVSAER 212
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 92/210 (43%), Positives = 128/210 (60%), Gaps = 7/210 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F FS V KV+ VQF ILSP+EI+ +SV +I++ + + P GL D R+GTID+
Sbjct: 6 FAFSAAPVRKVKEVQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMAECPGHFGHIELARPVFHPGFFNKVKKILECICVNCGKLKADITDPAFA 125
Query: 123 LALK-IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
++ IR+PK R+ + CKTK CE DE G DG+EP +K GCG QP +
Sbjct: 126 EKIRHIRNPKQRMAVVWDHCKTKTICE-ADEPREEGAEG-DGDEP-KKGHGGCGHQQPQI 182
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQLPEPVER 211
+G+ M +YK + K +DD+ + +P +R
Sbjct: 183 RKEGLKMFVQYK-KSKDDDDEMKSLQPDKR 211
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 94/213 (44%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+
Sbjct: 6 QVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 65
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 66 NMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQ 125
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGM 186
P+ RL + CK K CEGG+++D L D ++ +K GCG QP++ G+
Sbjct: 126 PRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGL 181
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K ++AER
Sbjct: 182 DLTAEWK---HVNEDSQ------EKKIVVSAER 205
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 123/210 (58%), Gaps = 20/210 (9%)
Query: 7 FSPFKVA--KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTIDK 62
FSP V +V VQF ILSP+EIR MSV +I+ +T + P GGL D RLGTID+
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC M +CPGHFGH+ELAKP+FHIGF+ + I+ CVC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCE-----GGDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
+ R PK+RL + CKTK C+ G D D+ + + G GCGA
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGH-------GGCGAA 178
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
QPT+ DG+ + + K+ D+ LPE
Sbjct: 179 QPTIRKDGLRLWGSW----KRGKDESDLPE 204
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/203 (41%), Positives = 120/203 (59%), Gaps = 9/203 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S V +V+ VQF +LSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPVRRVKEVQFGVLSPEEIKAYSVAKIEHPEVMDEATHRPKLGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFINKVKKILECICVNCGKLKADISDPTFA 125
Query: 123 LALK-IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
++ IR PK R + CK KN CE + + G+D E +K GCG QP +
Sbjct: 126 DRIRHIRDPKKRFAAVWAFCKAKNVCESDEPKEE----GNDDAEEPKKGHGGCGHKQPQV 181
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQ 204
+G+ + YKA K+D +G+
Sbjct: 182 RKEGLKLFVNYKAD--KDDGEGK 202
>gi|74221116|dbj|BAE42062.1| unnamed protein product [Mus musculus]
Length = 321
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 7 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELA+P+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 67 MTECPGHFGHIELAEPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 126
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 127 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGQYQPRIRRSGLE 186
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 187 LYAEWKHVNEDSQEKKILLSP 207
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 135/221 (61%), Gaps = 16/221 (7%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + V+ VQF I+SPDEIR+MSVT+ I +T E G P GGL D R G ID+
Sbjct: 5 TDSKATIRTVKRVQFGIISPDEIRRMSVTDGGIRFSETMEGGRPKLGGLMDPRQGVIDRL 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD---GEEPLRKRKSGCGALQ 178
+ +K + P+ RL + CK KN CEGGDE+D+ D G++ + GCG Q
Sbjct: 125 IVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDGVDDPGGGQQNRKAGHGGCGRYQ 184
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K L+AER
Sbjct: 185 PSIRRAGLDLTAEWK---HVNEDSQ------EKKIALSAER 216
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 94/213 (44%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+
Sbjct: 6 QVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 65
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 66 NMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPRNPKIKEIVMKSKGQ 125
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGM 186
P+ RL + CK K CEGG+++D L D ++ +K GCG QP++ G+
Sbjct: 126 PRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGL 181
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K ++AER
Sbjct: 182 DLTAEWK---HVNEDSQ------EKKIIVSAER 205
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 89/208 (42%), Positives = 126/208 (60%), Gaps = 12/208 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KV+ VQF ILSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A KIRH PK+R+ + CKTK CE + + G + +EP +K GCG QP
Sbjct: 125 -ADKIRHVRDPKARMAVVWAHCKTKMTCETDEPKEEGE--GAENDEP-KKGHGGCGHQQP 180
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
+ +G+ + +YK + K+DD+ P+
Sbjct: 181 LVRKEGLKLFVQYK--KPKDDDESLQPD 206
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 13/218 (5%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFK 65
TFS ++ V VQF +LSPDE+R++SV +++ ERG+P AGG+ D RLG ID+ F
Sbjct: 7 TFSSAELKAVGAVQFGLLSPDELRRLSVVRVEYDVAFERGVPKAGGVLDPRLGAIDRNFP 66
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C TC + +CPGHFGH+EL KP+F++ + T+L +RCVC+ CS++L D D + A
Sbjct: 67 CATCEGSSIDCPGHFGHIELVKPVFNVLMLSTVLKTLRCVCYYCSRLLVDGSDSRMLRAA 126
Query: 126 KIRHPKSRLEQILCACKTKNKCEGG----DEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
+I+ P R + + C C GG +E +L + E + K + GCG LQP +
Sbjct: 127 RIKDPVKRFQAVFQLCNGTRVCGGGADSSEEQLMLPAAVLEARERIGKPREGCGNLQPHV 186
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
T DG+ ++AE+ ERKQ L AER
Sbjct: 187 TRDGLRILAEFPDAEAF---------AAERKQELAAER 215
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 129/209 (61%), Gaps = 13/209 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKKVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++L+KP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 MSECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPTNPKIKEIVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
+ RL + CK KN CEGGDE+D+ G ++ GCG QP + G+++ A
Sbjct: 133 RKRLAFVYDLCKGKNICEGGDEMDINKEDDGRGISTAKQTHGGCGRYQPNIRRAGLDLTA 192
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+K N+D E+K L+AER
Sbjct: 193 EWK---HVNEDSQ------EKKIPLSAER 212
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 94/213 (44%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+
Sbjct: 6 QVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 65
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 66 NMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQ 125
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGM 186
P+ RL + CK K CEGG+++D L D ++ +K GCG QP++ G+
Sbjct: 126 PRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGL 181
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K ++AER
Sbjct: 182 DLTAEWK---HVNEDSQ------EKKIIVSAER 205
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 130/210 (61%), Gaps = 14/210 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 14 VKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRMSRCQTCAGN 73
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP++HIGF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 74 MTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQP 133
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHD-GEEPLRKRKSGCGALQPTLTIDGMNMI 189
+ R + CK KN CEGGDE+DV D + R GCG QP++ G+++
Sbjct: 134 RKRFAFVYDLCKGKNICEGGDEMDVQKENPDDPSSQAKRSGHGGCGRYQPSIRRAGLDLT 193
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K +L+AER
Sbjct: 194 AEWK---HVNEDSQ------EKKISLSAER 214
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 127/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF I+SPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 16 IKRVQFGIISPDELKRMSVTEGGIRYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++RCVCF CSK+L D + K K L P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILVKSKGQP 135
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
+ RL + CK KN CEGG+E+D + + EE + K K GCG QP + G+
Sbjct: 136 RKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLE 195
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 196 LYAEWKHVNEDSQEKKILLSP 216
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 119/185 (64%), Gaps = 6/185 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 16 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGN 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++RCVCF CSK+L D + K K L P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQP 135
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMNM 188
+ RL + CK KN CEGG+E+D + E + K K GCG QP + G+ +
Sbjct: 136 RKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLEL 195
Query: 189 IAEYK 193
AE+K
Sbjct: 196 YAEWK 200
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 95/221 (42%), Positives = 135/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D + D ++ +K GCG Q
Sbjct: 125 IVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----MTKDNQQVDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWK---HVNEDSQ------EKKIIVSAER 212
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 132/212 (62%), Gaps = 16/212 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF IL+PDEIR+MSVTE I +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 13 VKRVQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 QTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPKIKEIVMKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGALQPTLTIDGMN 187
+ RL + CK KN CEGGDE+D+ + + RK+ GCG QP++ G++
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDIQKENDPNDPNQQQSRKAGHGGCGRYQPSIRRSGLD 192
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K +L+AER
Sbjct: 193 LTAEWK---HVNEDSQ------EKKISLSAER 215
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 132/217 (60%), Gaps = 21/217 (9%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE---IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCET 68
+ V+ VQF ILSPDE+R+MSVT I +T E G P GGL D R G +D+ +C+T
Sbjct: 10 IRTVKRVQFGILSPDEVRRMSVTTEGGIRFSETYEGGRPKLGGLMDPRQGVMDRITRCQT 69
Query: 69 CSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKI 127
C+ N ECPGHFGH+ELAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K
Sbjct: 70 CAGNQVECPGHFGHIELAKPVFHIGFLVKAIKILRCVCFYCSKLLVSPTNPKIKEVVMKT 129
Query: 128 R-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK----SGCGALQPTLT 182
+ P+ RL + CK KN CEGGDEID + + EE L + K GCG QP++
Sbjct: 130 KGQPRKRLVYVYDLCKGKNICEGGDEID---MPKENQEEALARGKKVGHGGCGRYQPSIR 186
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K N+D E+K LTA+R
Sbjct: 187 RSGLDLTAEWK---HVNEDSQ------EKKIVLTAQR 214
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 9/218 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F +S + V+ +QF +LSP+EIR +SV ++++ + + P GGL+D RLG+ID+
Sbjct: 4 FEYSSAPLRTVQEIQFGLLSPEEIRAISVAKVEYPEIMDPVTMKPRMGGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KF 121
FKC+TC +M ECPGHFGH+ELAKP+FHIGFM + + CVC NC K+L DE + F
Sbjct: 64 NFKCQTCGEDMKECPGHFGHIELAKPVFHIGFMPKIKKLCECVCMNCGKLLLDEHTNPHF 123
Query: 122 KLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK-RKSGCGALQPT 180
A+KIR PK R + + CKTK CE + +G+ + GCG++QPT
Sbjct: 124 AAAIKIRDPKKRFQAVWNLCKTKMVCEVDPGEEGEEEEEGNGQXASSHFHRGGCGSIQPT 183
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
+ DG+ + ++ R DD E +ER+Q E
Sbjct: 184 IRKDGLKLWGTWR--RASVDDD---TEQIERRQVHAEE 216
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 132/209 (63%), Gaps = 15/209 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I + +T E G P GL D R G I++ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L ++ K K + LK + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPKIKEIVLKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
+ RL + CK K CEGG+++D+ DG + ++ GCG QP++ G++++A
Sbjct: 133 RKRLAYVYDLCKGKKICEGGEDMDMSKEPTADGAK--KQGHGGCGHYQPSIRRTGLDLMA 190
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+K +N E+K ++AER
Sbjct: 191 EWKDVNDENQ---------EKKIQVSAER 210
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 135/222 (60%), Gaps = 15/222 (6%)
Query: 4 CFTFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTID 61
F+ S + V+ VQF IL+PDEIR+MSVTE I +T E G P GL D R G +D
Sbjct: 2 AFSDSKAPLRAVKRVQFGILAPDEIRRMSVTEGGIKFAETYEGGRPKLQGLMDPRQGVMD 61
Query: 62 KRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF 121
+ +C+TC+ N ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K
Sbjct: 62 RNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKSIKILRCVCFYCSKMLVSPTNPKI 121
Query: 122 K-LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGAL 177
K + +K + P+ RL + CK KN CEGGDE+D+ D ++P ++ GCG
Sbjct: 122 KEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPANQQPRKQGHGGCGRY 181
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
QP + G+++ AE+K N+D E+K +L+AER
Sbjct: 182 QPNIRRTGLDLTAEWK---HVNEDSQ------EKKISLSAER 214
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1748
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 126/209 (60%), Gaps = 5/209 (2%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+EIR +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEIRAISVAKIEYPETMDQTTKKPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ F+C+TC +M ECPGHFGH++LAKP+FHIGF+ + + CVC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIDLAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CKTK CE + + + G ++ R GCG Q
Sbjct: 121 PAMAQAIKIRDPKRRFNAVWSVCKTKMVCETDVTEEDMQVDGKPNQQKPTTR-GGCGHTQ 179
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K KN D+ + PE
Sbjct: 180 PTIRRDGLKLWGTWK--HNKNFDENEQPE 206
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats.
Identities = 88/203 (43%), Positives = 124/203 (61%), Gaps = 12/203 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KV+ VQF ILSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A KIRH PK+R+ + CKTK CE + + G + +EP +K GCG QP
Sbjct: 125 -ADKIRHVRDPKARMAVVWAHCKTKMTCETDEPKEEGE--GAENDEP-KKGHGGCGHQQP 180
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQ 202
+ +G+ + +YK + K+DD+
Sbjct: 181 LVRKEGLKLFVQYK--KPKDDDE 201
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats.
Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++L KP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLVKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K + P+ RL + CK K CEGG+++D L D ++ +K GCG Q
Sbjct: 125 IVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K N+D E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWK---HVNEDSQ------EKKIIVSAER 212
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 130/211 (61%), Gaps = 16/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDE+R+MSVTE I + +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEVRRMSVTEGGIKYSETYEGGRPKLGGLMDPRQGVMDRSTRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
ECPGHFGH++LAKP+FHIG++ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 73 QVECPGHFGHIDLAKPVFHIGYLVKAIKILRCVCFYCSKLLVSPTNPKIKEVVMKTKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR--KSGCGALQPTLTIDGMNM 188
+ RL + CK KN CEGGDE+D+ G D K+ GCG QP + G+++
Sbjct: 133 RKRLVYVYDLCKGKNICEGGDEMDIPK-EGQDDPNGQGKKVGHGGCGRYQPNIRRSGLDL 191
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K LTA+R
Sbjct: 192 TAEWK---HVNEDSQ------EKKIVLTAQR 213
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats.
Identities = 82/209 (39%), Positives = 123/209 (58%), Gaps = 11/209 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + ++ +QF +L P EI++MSV I + +T + + P GGL+D +LG+ID+
Sbjct: 6 FAASSAPLKSIQEIQFGLLDPAEIQEMSVAHIIYPETMDEAKQRPREGGLNDPKLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+ C TC NM ECPGHFGH+EL P+FH+GF+ + ++ CVC NC KIL DE + +FK
Sbjct: 66 AYSCATCGENMQECPGHFGHIELHTPVFHVGFINKIKKLLECVCHNCGKILGDESEHQFK 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR----KSGCGALQ 178
AL++R PK R E I CK K C+ D +G P K+ GCG Q
Sbjct: 126 DALRLRDPKKRFEAIWKVCKPKAVCQMDQPSD-----DFEGGAPKNKKPQIQHGGCGNRQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P L DG+ ++ +K Q+ +++++ + PE
Sbjct: 181 PELRKDGLKLVGTWKPQKGEDEEEARQPE 209
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 129/209 (61%), Gaps = 14/209 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF IL+PDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKKVQFGILAPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--HP 130
M ECPGHFGH++LAKP+FHIGF+ L I+RCVCF CSK+L ++ K K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFYCSKMLVSPQNPKIKEVVSKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
+ RL + CK K CEGG+++D L+ G + + GCG QP+L G+++ A
Sbjct: 133 RKRLAYVYDLCKGKKICEGGEDMD-LTKEGAPADPNKKAGHGGCGHYQPSLRRTGLDITA 191
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+ K +D+ Q E+K ++AER
Sbjct: 192 EW----KHVNDESQ-----EKKIFVSAER 211
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 133/212 (62%), Gaps = 20/212 (9%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF IL+PDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+ N
Sbjct: 13 VKKVQFGILAPDEIRRMSVTEGGVRFSETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FHIGF+ L I+RCVCFNCSK+L ++ K K + +K + P
Sbjct: 73 MTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFNCSKLLVSPQNPKIKEVVVKSKGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG--EEPLRKR-KSGCGALQPTLTIDGMN 187
+ RL + CK K CEGG+++D + DG +P +K GCG QP + G++
Sbjct: 133 RKRLAYVYDLCKGKKICEGGEDMD----MTKDGIPTDPSKKTGHGGCGHYQPQIKRTGLD 188
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K ++AER
Sbjct: 189 ITAEWK---HVNEDTQ------EKKIVVSAER 211
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 88/209 (42%), Positives = 125/209 (59%), Gaps = 13/209 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ F+C+TC +M ECPGHFGH+ELAKP+FHIGF+ + VC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CKTK CE + D ++ ++P R GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNEDEMT------DQPSR---GGCGHPQ 171
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K Q K DD Q PE
Sbjct: 172 PTIRRDGLKLWGTWK-QNKNYDDNDQ-PE 198
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 91/216 (42%), Positives = 128/216 (59%), Gaps = 29/216 (13%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F S ++ +V+ VQF +LSPDEIRKMSV EI+ +T E+G P GGLSD R+GT+D+
Sbjct: 7 FPHSTAELRRVKAVQFGVLSPDEIRKMSVCEIETAETYEKGRPKRGGLSDPRMGTMDRAM 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKL 123
CET N + PG+FGHLELAKP+FH GF+K +++++RCV F+ SK++ D+ ED KF
Sbjct: 67 ACETDGMNSTDTPGYFGHLELAKPVFHYGFIKNVVSVLRCVGFSSSKLMIDKNEDPKFAQ 126
Query: 124 ALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
++I++ K RL + ACKTK C G QP +
Sbjct: 127 IMRIKNNKQRLRKFTDACKTKTIC------------------------PATGTPQPQYRL 162
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+GM + AE+ KK ++ LP+ ERKQ +T ER
Sbjct: 163 EGMKITAEF----KKLEEDDYLPDGGERKQVITPER 194
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 88/209 (42%), Positives = 125/209 (59%), Gaps = 13/209 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ F+C+TC +M ECPGHFGH+ELAKP+FHIGF+ + VC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CKTK CE + D ++ ++P R GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNEDEMT------DQPSR---GGCGHPQ 171
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K Q K DD Q PE
Sbjct: 172 PTIRRDGLKLWGTWK-QNKNYDDNDQ-PE 198
>gi|449680520|ref|XP_004209607.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Hydra
magnipapillata]
Length = 576
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 130/211 (61%), Gaps = 15/211 (7%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF +LSPDEIR+MSVT+ I + +T E G P GL D R GTID+ +C+TC+ N
Sbjct: 17 VKKVQFGVLSPDEIRRMSVTDGGICYAETMEAGKPKLCGLMDPRQGTIDRMTRCQTCAGN 76
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF--KLALKIRHP 130
M ECPGHFGH+EL+KP+FHIGF+ + IMRC CF CSK+L D+ K L+ P
Sbjct: 77 MTECPGHFGHIELSKPVFHIGFLTMTIKIMRCFCFYCSKLLVDKNHPKLLEILSKTKSQP 136
Query: 131 KSRLEQILCACKTKNKCEGGDEID--VLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNM 188
K R + + CK K+ CEGGD +D + L ++ E+ +K GCG QP + +++
Sbjct: 137 KKRFQHVYDLCKGKSICEGGDIMDQQFDANLANNEEQAEKKGHGGCGRYQPQIRRQALDL 196
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K N+D E+K +LTAER
Sbjct: 197 TAEWK---NVNEDSQ------EKKISLTAER 218
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 19/220 (8%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFK 65
+P K +V +QF ILSPDEIR+MSVTE I + +TTE G P GGL D R G ID+ +
Sbjct: 10 APLK--EVHRMQFGILSPDEIRRMSVTEGGIKYPETTEGGRPKVGGLMDPRQGVIDRVSR 67
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C+TC+ NM ECPGHFGH++LAKP++H+GF+ + ++RC CF CSK+L D K + +
Sbjct: 68 CQTCAGNMSECPGHFGHVDLAKPVYHVGFLTKTIKVLRCFCFFCSKLLVDPAHPKIRDIV 127
Query: 126 KIRHPK--SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS----GCGALQP 179
K RL + CK KN CEGGDEID E+ +RK+++ GCG QP
Sbjct: 128 SKSKGKGRQRLAHVYDLCKGKNICEGGDEIDKEQSEPGAEEKKVRKQQASSHGGCGRYQP 187
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ G+ ++AE+K + + D +K L+AER
Sbjct: 188 KIRRTGLTLMAEWKHVNEDSQD---------KKIVLSAER 218
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 90/216 (41%), Positives = 135/216 (62%), Gaps = 18/216 (8%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+ V+ +QF ILSP+E R MSV EI + + E G P GGL D R G ID+R +C+TC+
Sbjct: 12 SDVKSIQFGILSPEECRAMSVCEILYPEINENGKPKLGGLMDPRQGVIDRRSRCQTCAGT 71
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL-KIRHP- 130
+ +CPGHFGHLEL+KP++H+GF+ +L ++RCVCF CS++L ++ K + AL K ++
Sbjct: 72 IADCPGHFGHLELSKPVYHVGFLPKVLKVLRCVCFYCSRLLVNKNSTKVEAALAKTKYSC 131
Query: 131 KSRLEQILCACKTKNKCEGGDE------IDVLSLLGHDGEEPLR-KRKSGCGALQPTLTI 183
+ RL I CK K CEG ++ +D L+ +GE+ + K +GCG QP+
Sbjct: 132 RKRLTTIYDLCKVKRICEGIEKSPEQLAVDRGELVEENGEDSQQAKAPTGCGRYQPSYKR 191
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+ +IAE+ KK +++ Q E+K TL+AER
Sbjct: 192 VGLEVIAEW----KKTNEEMQ-----EKKMTLSAER 218
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 124/209 (59%), Gaps = 8/209 (3%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETIDQSTKKPREAGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TC +M ECPGHFGH+EL KP+FHIGF+ + + CVC +C K+L DE +
Sbjct: 61 SIDRNFKCQTCGEDMAECPGHFGHIELTKPVFHIGFIAKIKKVCECVCMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CK K CE D ++ +P + K GCG Q
Sbjct: 121 LAMSQAIKIRDPKKRFNAVWNLCKAKMICEA----DNVTSENDPNWKPDQPNKGGCGHTQ 176
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K + KN D+ + PE
Sbjct: 177 PTVRRDGLKLWGTWK--QNKNFDENEQPE 203
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 125/213 (58%), Gaps = 16/213 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPM--AGGLSDLRLGTIDK 62
F +S V KV+ VQF ILSP+EI+ SV +I+ + + G GG++D R+GTID+
Sbjct: 6 FAYSAAPVRKVKEVQFGILSPEEIKANSVAKIEFPEINDEGTHRLKTGGVNDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK--SGCGAL 177
A +IRH PK RL + CK K CE D + +G+E ++K GCG +
Sbjct: 125 -ADRIRHVRDPKHRLAAVWAYCKGKMMCETDDPKE-------EGQEDHEEKKGHGGCGHI 176
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVE 210
QP + +G+ M +YK + +D + +L P E
Sbjct: 177 QPVIRKEGLKMFVQYKKAKDDDDSEKRLIMPSE 209
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 82/194 (42%), Positives = 118/194 (60%), Gaps = 8/194 (4%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCET 68
P K +V +QF + S ++IRKMSV E+ + E GMP A GL+DLRLGT+D R +C T
Sbjct: 15 PLK--RVDQLQFGVFSSEQIRKMSVCEVTTSELYEHGMPKANGLNDLRLGTLDYRQQCRT 72
Query: 69 CSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR 128
C+ ++ CPGHFGHL L KP++H GF+ +L ++RCVC+ C K+L D D K + LKIR
Sbjct: 73 CNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQQVLKIR 132
Query: 129 HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMN 187
P RL+ +L AC + +CEG L L PL + + GCG +QP +G N
Sbjct: 133 SPSRRLKHVLDACSGRKRCEG-----YLPLPTDGAPAPLAEEGEGGCGCVQPRYFKEGPN 187
Query: 188 MIAEYKAQRKKNDD 201
++ + R++ D+
Sbjct: 188 IMVLFPDNREEGDE 201
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 134/221 (60%), Gaps = 14/221 (6%)
Query: 4 CFTFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTID 61
F S + V+ VQF IL+PDEIR+MSVTE I +T E G P GL D R G +D
Sbjct: 2 AFLDSKAPLRTVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLQGLMDPRQGVMD 61
Query: 62 KRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF 121
+ +C+TC+ N ECPGHFGH++LAKP+FH+GF+ + I+RCVCF CSK+L + K
Sbjct: 62 RNSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKMLVSPANPKI 121
Query: 122 K-LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGH-DGEEPLRKRKSGCGALQ 178
K + +K + P+ RL + CK KN CEGGDE+D+ + ++P ++ GCG Q
Sbjct: 122 KEVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNDEPNSQQPRKQGHGGCGRYQ 181
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P + G+++ AE+K N+D E+K +L+AER
Sbjct: 182 PNIRRSGLDLTAEWK---HVNEDSQ------EKKISLSAER 213
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 82/191 (42%), Positives = 115/191 (60%), Gaps = 9/191 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F +S + V+ VQF +LSP+EIR +SV +I++ + + R P GGL+D +LG+ID+
Sbjct: 4 FPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREGGLNDPKLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELAKP+FHIGF+ + + C+C NC K+L DE +
Sbjct: 64 NFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCGKLLLDETNPTMA 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++IR PK R + CKTK CE +D S E+ + R GCG QP +
Sbjct: 124 QAIRIRDPKKRFNAVWQLCKTKMVCEADAPVDEYS------EQKVVSR-GGCGNTQPVVR 176
Query: 183 IDGMNMIAEYK 193
DGM + +K
Sbjct: 177 KDGMKLWGTWK 187
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 130/215 (60%), Gaps = 22/215 (10%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I + +T E G P GGL D R G +D+ +C+TC+ N
Sbjct: 13 VKRVQFGILSPDEIRRMSVTEGGIKYPETYEGGRPKIGGLMDPRQGVMDRMSRCQTCAGN 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP++H+GF+ + I+RCVCF CSK+L + K K + K R P
Sbjct: 73 MSECPGHFGHIDLAKPVYHVGFLTKTIKILRCVCFFCSKMLVSPSNAKIKEIITKSRGQP 132
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP------LRKRKSGCGALQPTLTID 184
+ RL + CK KN CEGGDE+D+ + + P + GCG QP +
Sbjct: 133 RKRLTFVYDLCKGKNICEGGDEMDITK---ENPDNPGGGGKDKKPGHGGCGRYQPNIRRA 189
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K + N E+K +L+AER
Sbjct: 190 GLDLTAEWKHTNEDNQ---------EKKISLSAER 215
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 13/209 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ F+C+TC +M ECPGHFGH+ELAKP+FHIGF+ + VC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CK+K CE + D ++ ++P R GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKSKMVCETDNNEDEMT------DQPSR---GGCGHPQ 171
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K + KN D + PE
Sbjct: 172 PTIRRDGLKLWGTWK--QNKNYDDNEQPE 198
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 132/212 (62%), Gaps = 20/212 (9%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQF ILSPDEIR+MSVTE I +T E G P GL D R G I++ +C+TC+ N
Sbjct: 12 VKRVQFGILSPDEIRRMSVTEGGIQFAETMEGGRPKLCGLMDPRQGVIERTSRCQTCAGN 71
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P
Sbjct: 72 MTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEIVMKSKGQP 131
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG--EEPLRKR-KSGCGALQPTLTIDGMN 187
+ RL + CK K CEGG+++D L DG +P +K+ GCG QP++ G++
Sbjct: 132 RKRLAYVYDLCKGKKICEGGEDMD----LTKDGGVADPSKKQGHGGCGHYQPSIRRTGLD 187
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++AE+K +N E+K ++AER
Sbjct: 188 LMAEWKEVNDENQ---------EKKMQVSAER 210
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 125/201 (62%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF I+SPDE+++MSVT I + +TTE G P GL D R G I++ +C+TC+ N
Sbjct: 16 IKRVQFGIISPDELKRMSVTTEGIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGN 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++RCVCF CSK+L D + K K L P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQP 135
Query: 131 KSRLEQILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
+ RL + CK KN CEGG+E+D + D EE + K K GCG QP + G+
Sbjct: 136 RKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEEDITKEKGHGGCGRYQPRIRRSGLE 195
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 196 LFAEWKHVNEDSQEKKILLSP 216
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 84/206 (40%), Positives = 124/206 (60%), Gaps = 9/206 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KVR VQF ILSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPIRKVREVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKLGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC ++ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADSSDPTFA 125
Query: 123 LALK-IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
++ IR PK+R++ + CK+K CE D + ++ +K GCGA QP +
Sbjct: 126 DRIRHIRDPKARMQAVWNYCKSKMICEP----DEPKDDNDNADDEAKKGHGGCGATQPQV 181
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQLPE 207
+G+ + +YK R K++D+ P+
Sbjct: 182 RKEGLKLFVQYK--RGKDEDESLQPD 205
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 21/209 (10%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ VQF ILSPDEI+ MSV EI+ +T E G+P GGL D R G +D+R +C TC
Sbjct: 43 EIKRVQFGILSPDEIKDMSVCEIEFSQTYEDGVPKRGGLMDPRQGVVDRRGRCTTCCGGQ 102
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHPK 131
+CPGHF H+ LAKP+FH+G + L ++RCVCF CS++L + +++ + L+ +P+
Sbjct: 103 ADCPGHFAHITLAKPVFHVGLVSKTLKVLRCVCFYCSRVLVSKNNERVRRILSKTTGNPR 162
Query: 132 SRLEQILCACKTKNKCEGGD-EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
R E I CKTK C+ D E+D++ KS CG QP+ G+ + A
Sbjct: 163 RRFELIYALCKTKTACDDADEEVDIIE----------EYAKSACGRYQPSYRRTGIEITA 212
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+K R+ ND+Q E K L+AER
Sbjct: 213 EWK--RRANDEQQ------EHKLVLSAER 233
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats.
Identities = 92/244 (37%), Positives = 140/244 (57%), Gaps = 35/244 (14%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTE------------IDHGKTTERGMPMAGGL 52
F++S ++ +V+ +QF + SP+EIR MSVT+ I +T G P+ GG+
Sbjct: 6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGI 65
Query: 53 SDLRLGTIDKRFKCETCS-------SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCV 105
D R+GT D R +C+TC + +CPGHFGH+ELA+PM+H+GF+K +L I+RCV
Sbjct: 66 GDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHVELARPMYHMGFIKEVLKILRCV 125
Query: 106 CFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDV--------LS 157
CF+CSK+L+DE D +F+ A+KI++ K RL+ + C K+ CE G+E D+ +
Sbjct: 126 CFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYGEEADMEKMREDLNIG 185
Query: 158 LLG--HDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTL 215
L G D +P GCG LQP G+ ++ E+ Q + +P +RKQ L
Sbjct: 186 LQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQME------DVPGSGDRKQNL 239
Query: 216 TAER 219
A +
Sbjct: 240 PAAK 243
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 89/212 (41%), Positives = 128/212 (60%), Gaps = 11/212 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KV+ VQF ILSP+EI+ SV +I+H + + P GGL D RLGTID+
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKIGGLMDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC ++ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFVVKVKKILECICVNCGRLKADISDPTF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A +IRH PK+R++ + CK K CE + D + +D EP R GCGA QP
Sbjct: 125 -ADRIRHVRDPKARMQVVWNYCKGKMICEPDEPRDENDNMEND--EPKRGH-GGCGAAQP 180
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVER 211
+ +G+ + +YK + K D++ + +P +R
Sbjct: 181 QIRKEGLKLFVQYK-RSKDEDEEVKTLQPDKR 211
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1853
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 92/207 (44%), Positives = 127/207 (61%), Gaps = 15/207 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECP 77
VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C TC+ N+ +CP
Sbjct: 18 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVIDRRGRCMTCAGNLTDCP 77
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--HPKSRLE 135
GHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + + LK +PK RL
Sbjct: 78 GHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTSGNPKKRLA 137
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPL---RKRKSGCGALQPTLTIDGMNMIAEY 192
I CK+K+ CEG E + L D ++P+ +K +GCG QP+ G+++ AE+
Sbjct: 138 LIYDLCKSKSVCEGAAEKE--DGLPDDMDDPMNEGKKVPAGCGRYQPSYRRVGIDINAEW 195
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
K + N+D ERK LTAER
Sbjct: 196 K--KNVNEDTQ------ERKIMLTAER 214
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 4/214 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F S + V+ +QF + SP+EI+ MSV I++ +T +R P GL+D +LGTID+
Sbjct: 4 FAHSDAPLKTVKEIQFGLFSPEEIKNMSVCHIEYPETMDEQRNRPRERGLNDPKLGTIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
C TC + ECPGHFGH+ELA P++H+G++ + I+ VC NC K+L DE + F
Sbjct: 64 SQMCATCGESQQECPGHFGHIELAVPVYHVGYITKIKKILESVCNNCGKLLEDERNPTFA 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
LA+K+R PK R E + CK K C+ + D G D ++P GCG +QPT+
Sbjct: 124 LAIKLRDPKRRFEAVTRLCKPKMDCQTDEPSDEDGQFGDDPKKPKLAGHGGCGNMQPTIR 183
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLT 216
DG+ +I +K KN+D G+ P ++ T T
Sbjct: 184 KDGLKLIGTWKM--PKNEDTGEDNSPEKKPITPT 215
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 134/216 (62%), Gaps = 19/216 (8%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V VQFSILSPDEI++MSVTE I + +TTE G P GL D R G +D+ +C+TC+
Sbjct: 15 EVVRVQFSILSPDEIKRMSVTEGGIRYSETTEGGRPKLQGLMDPRQGVVDRLSRCQTCAG 74
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIRH- 129
NM +CPGHFGH+EL+KP+FH+GF+ ++ ++RC CF CSK+L D K K + +K +
Sbjct: 75 NMHDCPGHFGHIELSKPVFHVGFIAKVVKVLRCFCFYCSKLLVDNNHPKIKEILIKSKGL 134
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDV-----LSLLGHDGEEPLR-KRKSGCGALQPTLTI 183
P+ RL + CK K CEGG+E+D L+ + ++P + K GCG QP++
Sbjct: 135 PRKRLGHVYELCKGKKVCEGGEEMDHKFDADLAQREDEADQPAKPKGHGGCGRYQPSIRR 194
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+ + AE+K N+D E+K LTAER
Sbjct: 195 AGLELTAEWK---NVNEDSQ------EKKIILTAER 221
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 129/202 (63%), Gaps = 14/202 (6%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
+SPDEIR+MSV+E I + +T E G P GGL D R G +D+ +C+TC+ NM ECPGHF
Sbjct: 1 ISPDEIRRMSVSEGGIRYPETMEGGRPKLGGLMDPRQGVMDRHSRCQTCAGNMTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH++LAKP+FH+GF+ ++ ++RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 61 GHIDLAKPVFHVGFLTKVIKVLRCVCFYCSKLLVSPSNPKIKEIVMKSKGQPRKRLAFVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIAEYKAQRK 197
CK KN CEGGDE+D+ + D + RK GCG QP++ G++M AE+K
Sbjct: 121 DLCKGKNICEGGDEMDLHKDMPDDPSQQNRKAGHGGCGRYQPSIRRAGLDMTAEWK---H 177
Query: 198 KNDDQGQLPEPVERKQTLTAER 219
N+D E+K +L+AER
Sbjct: 178 INEDSQ------EKKISLSAER 193
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 15/214 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + V +QF +++P+EI+ MSV + +T + R P GGL+D LG+ID+
Sbjct: 6 FTHSSAPIKTVEEIQFGLMAPEEIKNMSVCHCVYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TCS MGECPGHFGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F
Sbjct: 66 QFKCKTCSQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGAL 177
A+ R PK R ++ CK K +CE +V DGE L +++ GCG +
Sbjct: 126 QAVNTRDPKVRFNRVWNICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNHGGCGNI 181
Query: 178 QPTLTIDGMNMIAEYKAQR----KKNDDQGQLPE 207
QP + + +IA+++AQ KK ++ PE
Sbjct: 182 QPRVRHKALQLIAKFEAQGEDGVKKKEEPPITPE 215
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 122/211 (57%), Gaps = 16/211 (7%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+VR VQF IL PDEIR+MSVTE I + + E P GGL D R G ID+ +C TCS
Sbjct: 15 EVREVQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRTSRCLTCSG 74
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL---KIR 128
NM ECPGHFGHLELAKP+FH+GF+ L ++RCVC+ CS++L + + L K
Sbjct: 75 NMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPNHPRMREILSKTKTT 134
Query: 129 HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNM 188
+ RL+++ CKTK+ CE D D G EE + GCG QP G+++
Sbjct: 135 QRQQRLDKVYEICKTKSMCEESDTSD--KGQGEPTEEERKMMHVGCGRYQPNYRRSGLDI 192
Query: 189 IAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K ++N E+KQ LTAER
Sbjct: 193 SAEWKHTNEENQ---------EKKQVLTAER 214
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 82/210 (39%), Positives = 127/210 (60%), Gaps = 11/210 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + V +QF +++P+EI+ MSV + + +T + R P GGL+D LG+ID+
Sbjct: 6 FTHSSAPIKTVEEIQFGLMAPEEIKNMSVCHVLYPETMDETRTKPRDGGLNDPMLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ MGECPGHFGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F
Sbjct: 66 QFKCKTCNQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGAL 177
A+ R PK R +I CK K +CE + + DGE L +++ GCG +
Sbjct: 126 QAVNTRDPKVRFNRIWNICKKKTRCEN----ETKEVKNDDGEYSLGMKQAPVNHGGCGNI 181
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
QP + + +IA+Y++ + + + P+
Sbjct: 182 QPRVRHKALQLIAKYESSGEDGVKKKEEPQ 211
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 13/209 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F FS + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRTFPFSNAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TC +M ECPGHFGH+ELAKP+FHIGF+ + + +C +C K+L DE +
Sbjct: 61 SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHCGKLLLDESN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CKTK CE + ++ + P R GCG Q
Sbjct: 121 PLMAQAIKIRDPKKRFNAVWSICKTKMVCETATSEEEMN------DHPTR---GGCGHTQ 171
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + +K KN ++ PE
Sbjct: 172 PTIRRDGLKLWGTWK--HNKNFEENDQPE 198
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 4/206 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI AD D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSDSKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL++R PK R + I K CE D + +PLR R GCG QPT+
Sbjct: 126 EALRMRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLR-RHGGCGNAQPTIR 184
Query: 183 IDGMNMIAEYKAQRKKND-DQGQLPE 207
+G+ ++ +K + D D+ Q PE
Sbjct: 185 KEGITLVGTWKPNKSMMDEDEMQQPE 210
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 4/206 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI AD D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSDSKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL++R PK R + I K CE D + +PLR R GCG QPT+
Sbjct: 126 EALRMRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLR-RHGGCGNAQPTIR 184
Query: 183 IDGMNMIAEYKAQRKKND-DQGQLPE 207
+G+ ++ +K + D D+ Q PE
Sbjct: 185 KEGITLVGTWKPNKSMMDEDEMQQPE 210
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 81/194 (41%), Positives = 118/194 (60%), Gaps = 8/194 (4%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCET 68
P K +V +QF + S +++RKMSV E+ + E GMP A GL+DLRLGT+D R +C T
Sbjct: 15 PLK--RVDQLQFGVFSSEQLRKMSVCEVTTSELYEHGMPKANGLNDLRLGTLDYRQQCRT 72
Query: 69 CSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR 128
C+ ++ CPGHFGHL L KP++H GF+ +L ++RCVC+ C K+L D D K + LKIR
Sbjct: 73 CNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQHILKIR 132
Query: 129 HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMN 187
P RL+ +L AC + +CEG L L PL + + GCG +QP +G N
Sbjct: 133 SPSRRLKHVLDACAGRKRCEG-----YLPLPADGMPVPLAEEGEGGCGCVQPRYFKEGPN 187
Query: 188 MIAEYKAQRKKNDD 201
++ + R++ D+
Sbjct: 188 IMVLFPDNREEGDE 201
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 81/194 (41%), Positives = 118/194 (60%), Gaps = 8/194 (4%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCET 68
P K +V +QF + S +++RKMSV E+ + E GMP A GL+DLRLGT+D R +C T
Sbjct: 15 PLK--RVDQLQFGVFSSEQLRKMSVCEVTTSELYEHGMPKANGLNDLRLGTLDYRQQCRT 72
Query: 69 CSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR 128
C+ ++ CPGHFGHL L KP++H GF+ +L ++RCVC+ C K+L D D K + LKIR
Sbjct: 73 CNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQHILKIR 132
Query: 129 HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMN 187
P RL+ +L AC + +CEG L L PL + + GCG +QP +G N
Sbjct: 133 SPSRRLKHVLDACAGRKRCEG-----YLPLPADGMPVPLAEEGEGGCGCVQPRYFKEGPN 187
Query: 188 MIAEYKAQRKKNDD 201
++ + R++ D+
Sbjct: 188 IMVLFPDNREEGDE 201
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 127/205 (61%), Gaps = 17/205 (8%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
LSPDEIR+MSVTE I +T E G P GGL D R G +D+ +C+TC+ NM ECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVMDRNSRCQTCAGNMTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH+ELAKP+FH+GF+K + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 61 GHIELAKPVFHVGFIKQTIKILRCVCFYCSKMLVSPTNPKIKEIVMKTKGQPRKRLTFVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK----SGCGALQPTLTIDGMNMIAEYKA 194
CK KN CEGGDE+D+ + ++P + K GCG QP + G+++ AE+K
Sbjct: 121 DLCKGKNICEGGDEMDLAKDPDRNPDDPGGQSKKQGHGGCGRYQPNIRRSGLDLSAEWK- 179
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K L+AER
Sbjct: 180 --HANEDTQ------EKKIALSAER 196
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 129/213 (60%), Gaps = 14/213 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ V+ VQF ILS DE R+MSVTE I +T E G P GGL D R G ID+ +C+TC
Sbjct: 10 IRTVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRFSRCQTC 69
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM EC GHFGH+ELAKP+FHIGF+ + I+RCVCF CSK+L K K + +K +
Sbjct: 70 AGNMTECCGHFGHIELAKPVFHIGFLTKAIKILRCVCFYCSKLLVSPTHPKVKEIVMKSK 129
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGM 186
+ RL + CK KN CEGGDE+D+ +D P +K+ GCG QPT+ G+
Sbjct: 130 GQQRKRLAFVYDLCKGKNICEGGDELDINKDNINDSNMPPKKQGHGGCGRYQPTIRRVGL 189
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K LTAER
Sbjct: 190 DLTAEWK---HVNEDSQ------EKKIPLTAER 213
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 130/215 (60%), Gaps = 18/215 (8%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
VR VQF +LSPDE+R+ SVTE I + + E G P GGL D R G ID+ +C+TC+
Sbjct: 15 NVRRVQFGVLSPDEMRRNSVTEGGIRYSEIMEAGKPKLGGLMDPRQGAIDRTSRCQTCAC 74
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
N +CPGHFGH+ELAK +FHIGF+ + ++RCVCF CSK+L D K K + +K +
Sbjct: 75 NQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFFCSKLLVDANHPKIKEILIKTKGQ 134
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVL---SLLGHDGEEPLRKRKS--GCGALQPTLTID 184
P+ RL + C+ K CEGG+E+D +L +GEE K+ S GCG QP +
Sbjct: 135 PRKRLLHVYTECRKKKMCEGGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRYQPQIRRS 194
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K N+D E+K LTAER
Sbjct: 195 GLDLSAEWK---HVNEDSQ------EKKIVLTAER 220
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 127/204 (62%), Gaps = 16/204 (7%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
+SPDEIR+MSVTE I +T E G P GGL D R G +D+ +C+TC+ NM ECPGHF
Sbjct: 1 ISPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVMDRHSRCQTCAGNMTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 61 GHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQPRKRLTFVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGALQPTLTIDGMNMIAEYKAQ 195
CK KN CEGGDE+D+ D + RK+ GCG QP++ G+++ AE+K
Sbjct: 121 DLCKGKNICEGGDEMDIQKDGADDPGGGAQNRKAGHGGCGRYQPSIQRTGLDLTAEWK-- 178
Query: 196 RKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K +L+AER
Sbjct: 179 -HVNEDSQ------EKKISLSAER 195
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 128/203 (63%), Gaps = 15/203 (7%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
LSPDEIR+MSVTE I + +T E G P GGL D R G ID+ +C+TC+ NM ECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIKYAETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH++LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 61 GHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQPRKRLTFVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHD-GEEPLRKR-KSGCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ CEGGDE+D+ D G+E RK+ GCG QP L G+++ AE+K
Sbjct: 121 DLCKGKHICEGGDEMDMNKDNPDDPGKEQQRKQGHGGCGRYQPNLRRVGLDVSAEWK--- 177
Query: 197 KKNDDQGQLPEPVERKQTLTAER 219
N+D E+K LTAER
Sbjct: 178 HINEDSQ------EKKIALTAER 194
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
3 [Strongylocentrotus purpuratus]
Length = 1921
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 130/215 (60%), Gaps = 18/215 (8%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
VR VQF +LSPDE+R+ SVTE I + + E G P GGL D R G ID+ +C+TC+
Sbjct: 15 NVRRVQFGVLSPDEMRRNSVTEGGIRYSEIMEAGKPKLGGLMDPRQGAIDRTSRCQTCAC 74
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
N +CPGHFGH+ELAK +FHIGF+ + ++RCVCF CSK+L D K K + +K +
Sbjct: 75 NQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFFCSKLLVDANHPKIKEILIKTKGQ 134
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVL---SLLGHDGEEPLRKRKS--GCGALQPTLTID 184
P+ RL + C+ K CEGG+E+D +L +GEE K+ S GCG QP +
Sbjct: 135 PRKRLLHVYTECRKKKMCEGGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRYQPQIRRS 194
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K N+D E+K LTAER
Sbjct: 195 GLDLSAEWK---HVNEDSQ------EKKIVLTAER 220
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 129/213 (60%), Gaps = 14/213 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ V+ VQF ILS DE R+MSVTE I +T E G P GGL D R G ID+ +C+TC
Sbjct: 10 IRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRFSRCQTC 69
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM EC GHFGH+ELAKP+FH+GF+ + I+RCVCF CSK+L K K + +K +
Sbjct: 70 AGNMTECCGHFGHIELAKPVFHVGFVTKAIKILRCVCFYCSKLLVSPTHPKVKEIVMKSK 129
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGM 186
+ RL I CK KN CEGGDE+D+ +D P +K+ GCG QPT+ G+
Sbjct: 130 GQQRKRLAFIYDLCKGKNICEGGDELDINKDNVNDPNMPPKKQGHGGCGRYQPTIRRVGL 189
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K LTAER
Sbjct: 190 DLTAEWK---HVNEDSQ------EKKIPLTAER 213
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 127/212 (59%), Gaps = 13/212 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
V V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G ID+ C+TC
Sbjct: 11 VRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGQPKMGGLMDPRQGVIDRNSCCKTC 70
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM +CPGHFGH++L+KP+FH+GF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 71 TGNMTQCPGHFGHIDLSKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSNPKIKEIVMKSK 130
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
P+ RL + CK K+ CEGGDE+D+ + GCG QP + G++
Sbjct: 131 GQPRKRLAFVYDLCKGKHICEGGDEMDIGKEDDGRSISTAKNTHGGCGRYQPNIRRTGLD 190
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K L+AER
Sbjct: 191 LTAEWK---HVNEDSQ------EKKIALSAER 213
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 124/212 (58%), Gaps = 13/212 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ +V+ VQF ILSPDEIR+MS TE I + + E G P GGL D R G +D+ +C+TC
Sbjct: 11 IRQVKKVQFGILSPDEIRRMSATEGGIRYPEVMEGGRPKLGGLMDPRQGVVDRLSRCQTC 70
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR- 128
+ NM ECPGHFGH++LAKP++H GF+ ++ +RCVCF CSK+L + K L+
Sbjct: 71 AGNMTECPGHFGHIDLAKPVYHSGFLTKIVKTLRCVCFYCSKLLVSPTTPRIKEILQKSK 130
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
P+ RL + CK K CEGGDE+D+ ++P R GCG QP + +
Sbjct: 131 GQPRKRLAAVYDLCKGKTICEGGDEMDLQREDDPSVQQPKRAGHGGCGRYQPKIRRAALE 190
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K N+D E+K LTAER
Sbjct: 191 LTAEWK---HLNEDSQ------EKKIALTAER 213
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 129/213 (60%), Gaps = 14/213 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ V+ VQF ILS DE R+MSVTE I +T E G P GGL D R G ID+ +C+TC
Sbjct: 10 IRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRFSRCQTC 69
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM EC GHFGH+ELAKP+FH+GF+ + I+RCVCF CSK+L K K + +K +
Sbjct: 70 AGNMTECCGHFGHIELAKPVFHVGFVTKAIKILRCVCFYCSKLLVSPTHPKVKEIVMKSK 129
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGM 186
+ RL I CK KN CEGGDE+D+ +D P +K+ GCG QPT+ G+
Sbjct: 130 GQQRKRLAFIYDLCKGKNICEGGDELDINKDNVNDPNMPPKKQGHGGCGRYQPTIRRVGL 189
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ AE+K N+D E+K LTAER
Sbjct: 190 DLTAEWK---HVNEDSQ------EKKIPLTAER 213
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 83/206 (40%), Positives = 123/206 (59%), Gaps = 14/206 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + V+ +QF +LSP+EI+ MSV I + +T + R P GGL+D LG++D+
Sbjct: 6 FAHSSAPLRTVKEIQFGLLSPEEIKSMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ NM ECPGHFGH+ELA+P++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 QFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRVKKILEIVCHNCSKVLADRNDKEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEG-----GDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
A+KIR PK R ++ CK K +C+ D+ + L GE P GCG
Sbjct: 126 AAMKIRDPKVRFNRVWAVCKKKRRCDNEVIKKSDDDEFNPLADAKGELP---GHGGCGND 182
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQG 203
PT+ + + A++ + D++G
Sbjct: 183 HPTVRQQALTLYAQFDTK----DEEG 204
>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
RN66]
gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
[Cryptosporidium muris RN66]
Length = 1927
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 84/212 (39%), Positives = 122/212 (57%), Gaps = 23/212 (10%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
FS ++ K+ ++F +LSPD IR+ SV E+ E G P +GGL+D +GTID C
Sbjct: 11 FSNKELKKIYSIEFGVLSPDLIRRYSVLEVTISDLYENGKPKSGGLNDPLMGTIDYHVLC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
ETC ++ CPGHF H+EL KPMFHIGF+ +L I+RCVCF CSK+ D D KFK+ K
Sbjct: 71 ETCHMDIKTCPGHFAHIELGKPMFHIGFVSVVLKILRCVCFACSKLFIDPMDPKFKVIQK 130
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
R+P RL++++ KT ++C ++ DG SGCG +QP ++ DG
Sbjct: 131 TRNPHLRLQRLVEISKTYSRC----------VISSDG--------SGCGFVQPQISKDGY 172
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
N+ + + DD E + ++ L+AE
Sbjct: 173 NLYIRQHEESRNMDD-----ESTDSRRMLSAE 199
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 126/212 (59%), Gaps = 15/212 (7%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
V V+ VQF ILSPD IR MSVTE I +T E G P GL D R G D+ +C+TC
Sbjct: 9 VRTVKKVQFGILSPDAIRGMSVTEGGIRFPETMEAGRPKINGLMDPRQGVNDRNSRCQTC 68
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR 128
+ NM ECPGHFGH++L KP+FHIGF+ + ++RCVCF CSK+L K K + +K +
Sbjct: 69 AGNMTECPGHFGHIDLVKPVFHIGFLSKTIKVLRCVCFYCSKLLVSPMHPKIKEIVIKTK 128
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
P+ RL + CK+K CEGGDE+D+ D + +K GCG QP + G++
Sbjct: 129 GQPRKRLLYVYDLCKSKTICEGGDEMDINK--ESDTIKSGKKGHGGCGRYQPVIRRSGLD 186
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K +++ E+K +LTAER
Sbjct: 187 LSAEWKHVNEESQ---------EKKISLTAER 209
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 134/214 (62%), Gaps = 20/214 (9%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF IL+PDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+
Sbjct: 12 QVKRVQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAG 71
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + ++RCVCF CSK+L + K K + +K +
Sbjct: 72 NMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVTPTNPKIKEVVMKSKGQ 131
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR----KSGCGALQPTLTIDG 185
P+ RL + CK KN CEGG+++D L G DG E K+ GCG QP++ G
Sbjct: 132 PRKRLAYVYDLCKGKNICEGGEDMD---LGGGDGTEEGAKKGAAGHGGCGHYQPSIHRSG 188
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+++ AE+K N+D E+K ++AER
Sbjct: 189 LDLTAEWK---HVNEDSQ------EKKIVISAER 213
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 14/213 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KV+ VQF ILSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSSAPIRKVKEVQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPNFA 125
Query: 123 LALK-IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP----LRKRKSGCGAL 177
++ IR K+RL + CK K CE D + DG +P +K GCG +
Sbjct: 126 DKIRHIRESKARLAVVWAHCKAKTVCEPDD-------IKEDGVDPEADEPKKGHGGCGHI 178
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVE 210
QP + +G+ + +YK + +D +L P E
Sbjct: 179 QPQVRKEGLKLFVQYKKTKDDDDPDKRLITPSE 211
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 14/213 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KV+ VQF ILSP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSSAPIRKVKEVQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPNFA 125
Query: 123 LALK-IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP----LRKRKSGCGAL 177
++ IR K+RL + CK K CE D + DG +P +K GCG +
Sbjct: 126 DKIRHIRESKARLAVVWAHCKAKTVCEPDD-------IKEDGVDPEADEPKKGHGGCGHI 178
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVE 210
QP + +G+ + +YK + +D +L P E
Sbjct: 179 QPQVRKEGLKLFVQYKKTKDDDDPDKRLITPSE 211
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum
NZE10]
Length = 1773
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKR 63
+ +P K V+ +QF + SP+EI+ MSV I++ +T +R P GL+D +LGTID+
Sbjct: 7 SLAPLKT--VQEIQFGLFSPEEIKNMSVCHIEYPETMDEQRNRPREKGLNDPKLGTIDRN 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKL 123
+C TC ECPGHFGH+ELA P+FH+GF+ + I+ VC NC K+L DE F +
Sbjct: 65 SRCGTCGEEQLECPGHFGHIELAIPVFHVGFITKIKKILESVCHNCGKLLEDERSTAFAM 124
Query: 124 ALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
ALK+R PK R EQI CK K C + G D ++P + GCG +QPT+
Sbjct: 125 ALKLRDPKRRFEQITRLCKGKTDCAADEPEKDDGNFGEDPKKPKQAGHGGCGNVQPTIRK 184
Query: 184 DGMNMIAEYKAQRKKN--DDQGQLPEPVERKQTLTAER 219
+ + +I +K + + DD G P+ + L R
Sbjct: 185 EQLKLIGTWKMAKNEETGDDAGIEKRPITPQMALNIFR 222
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 20/205 (9%)
Query: 22 ILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGH 79
ILSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+ NM ECPGH
Sbjct: 2 ILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGH 61
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQI 137
FGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 62 FGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAYV 121
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAEYKA 194
CK K CEGG+++D L D ++ +K GCG QP++ G+++ AE+K
Sbjct: 122 YDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK- 176
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K ++AER
Sbjct: 177 --HVNEDSQ------EKKIIVSAER 193
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats.
Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 20/205 (9%)
Query: 22 ILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGH 79
ILSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+ NM ECPGH
Sbjct: 2 ILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGH 61
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQI 137
FGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 62 FGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAYV 121
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAEYKA 194
CK K CEGG+++D L D ++ +K GCG QP++ G+++ AE+K
Sbjct: 122 YDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK- 176
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K ++AER
Sbjct: 177 --HVNEDSQ------EKKIIVSAER 193
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 14/201 (6%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
+SPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N ECPGHF
Sbjct: 1 ISPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGNQTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH++LAKP+FHIGF+ + I+RCVCF CSK+L K K + +K + P+ RL +
Sbjct: 61 GHIDLAKPVFHIGFLTKTIKILRCVCFYCSKLLVSPTHPKIKEIVMKSKGQPRKRLTFVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CK KN CEGGDE+D+ + D ++P + GCG QP + G+++ AE+K
Sbjct: 121 DLCKGKNICEGGDEMDI-NKENIDDQQPRKAGHGGCGRYQPNIRRAGLDLTAEWK---HV 176
Query: 199 NDDQGQLPEPVERKQTLTAER 219
N+D E+K L+AER
Sbjct: 177 NEDSQ------EKKINLSAER 191
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 125/203 (61%), Gaps = 15/203 (7%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
LSPDEIR+MSVTE I + E G P GGL D R G ID++ +C+TC+ NM ECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRFSEIYEGGRPKLGGLMDPRQGVIDRQSRCQTCAGNMTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 61 GHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVVMKSKGQPRKRLAHVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQR 196
CK KN CEGGDE+D+ + D G + ++ GCG QP + +++ AE+K
Sbjct: 121 DLCKGKNICEGGDELDLGKDIPDDPSGMQNKKQGHGGCGRYQPNIRRIALDLTAEWK--- 177
Query: 197 KKNDDQGQLPEPVERKQTLTAER 219
N+D E+K LTAER
Sbjct: 178 HVNEDSQ------EKKIVLTAER 194
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 14/213 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S + KV+ VQF ILSP+EI+ +SV +I+H + + P GGL D R+GTID+
Sbjct: 6 FAYSAAPIRKVKEVQFGILSPEEIKAISVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADILDPNF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGE--EPLRKRKSGCGAL 177
A KIRH PK+R+ + CKTK CE D + G D E EP +K GCG
Sbjct: 125 -ADKIRHIRDPKTRMAVVWAHCKTKTTCETDDPKEE----GADAENDEP-KKGHGGCGHS 178
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVE 210
QP + +G+ + +YK + +D +L P E
Sbjct: 179 QPQIRKEGLKLFLQYKKPKDDDDPDKRLITPSE 211
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 84/202 (41%), Positives = 121/202 (59%), Gaps = 14/202 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTIDK 62
FT S + V+ +QF +LSP+EI+ MSV I + +T E G P GGL+D LG+ID+
Sbjct: 6 FTHSSAPLKTVQEIQFGLLSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ MGECPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LADE D +F
Sbjct: 66 QFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEE-------PLRKRKSGCG 175
A+ R K R +++ CK K +CE D D + EE L + GCG
Sbjct: 126 AAINTRDAKLRFKRVWAVCKKKRRCENEDRTD-----KNKDEEFAPGIKPALVESHGGCG 180
Query: 176 ALQPTLTIDGMNMIAEYKAQRK 197
+QP + + + A ++ ++
Sbjct: 181 NVQPQVRQVALQLKAAFEVAQE 202
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats.
Identities = 91/244 (37%), Positives = 139/244 (56%), Gaps = 35/244 (14%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTE------------IDHGKTTERGMPMAGGL 52
F++S ++ +V+ +QF + SP+EIR MSVT+ I +T G P+ GG+
Sbjct: 6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGI 65
Query: 53 SDLRLGTIDKRFKCETCS-------SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCV 105
D R+GT D R +C+TC + +CPGHFGH+ELA+PM+H+GF+K +L I+R V
Sbjct: 66 GDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILRSV 125
Query: 106 CFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDV--------LS 157
CF+CSK+L+DE D +F+ A+KI++ K RL+ + C K+ CE G+E D+ +
Sbjct: 126 CFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYGEEADMEKMREDLNIG 185
Query: 158 LLG--HDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTL 215
L G D +P GCG LQP G+ ++ E+ Q + +P +RKQ L
Sbjct: 186 LQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQME------DVPGSGDRKQNL 239
Query: 216 TAER 219
A +
Sbjct: 240 PAAK 243
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 20/205 (9%)
Query: 22 ILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGH 79
ILSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+ NM ECPGH
Sbjct: 2 ILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGH 61
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQI 137
FGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 62 FGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLAYV 121
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAEYKA 194
CK K CEGG+++D L D ++ +K GCG QP++ G+++ AE+K
Sbjct: 122 YDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK- 176
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K ++AER
Sbjct: 177 --HVNEDSQ------EKKIIVSAER 193
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 13/209 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F +S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKTPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ F+C+TC +M ECPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDENN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CK K C E D++ +G R GCG Q
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWQLCKAKMVC----ETDII----EEGATETTTR-GGCGHTQ 171
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ DG+ + ++ KN ++ + PE
Sbjct: 172 PTIRRDGLKLWGTWR--HNKNFEENEQPE 198
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 124/201 (61%), Gaps = 13/201 (6%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
+SPDEIR+MSVTE I +T E G P GGL D R G ID+ +C+TC+ N EC GHF
Sbjct: 1 ISPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGNQTECAGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH+ LAKP+FH+GF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 61 GHINLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPKIKEVVMKSKGQPRKRLTFVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CK KN CEGGDE+D+ + ++P + GCG QP++ G+++ AE+K
Sbjct: 121 DLCKGKNICEGGDEMDIQKEDDPNSQQPRKAGHGGCGRYQPSIRRAGLDLTAEWK---HV 177
Query: 199 NDDQGQLPEPVERKQTLTAER 219
N+D E+K +L+AER
Sbjct: 178 NEDSQ------EKKISLSAER 192
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 9/217 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGM-PMAGGLSDLRLGTIDK 62
F FS V +V+ VQF ILSP+EI+ SV +I+ + E G P GGL D R+GTID+
Sbjct: 6 FAFSAAPVRQVKEVQFGILSPEEIKAYSVAKIEFPEVMDETGQRPKQGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH+GF+ + I+ C+C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMAECPGHFGHIELARPVFHVGFLVKVKKILECICVNCGKLKADTSDPNF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A K+RH PK R+ + CK+K CE + D + E ++K GCG +QP
Sbjct: 125 -ADKVRHVRDPKQRMAIVWNHCKSKMVCETDEPKDEDQEANAELAE-IKKGHGGCGHVQP 182
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQ-LPEPVERKQTL 215
+ +G+ + YK + +++ Q + + P E TL
Sbjct: 183 LIRKEGLKLFLVYKKSKDEDEMQDKRMFMPAEVHNTL 219
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 121/211 (57%), Gaps = 17/211 (8%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F FS + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRTFPFSNAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TC +M ECPGHFGH+ELAKP+FHIGF+ + + +C +C K+L DE +
Sbjct: 61 SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHCGKLLLDESN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR--KSGCGA 176
A+KIR PK R + CK+K CE EE + + GCG
Sbjct: 121 PLMAQAIKIRDPKKRFNAVWSICKSKMVCETA-----------TSEEEMNDHNVRGGCGH 169
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
QPT+ DG+ + +K KN ++ PE
Sbjct: 170 TQPTIRRDGLKLWGTWK--HNKNFEENDQPE 198
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/202 (45%), Positives = 124/202 (61%), Gaps = 14/202 (6%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
LSPDEIR+MSVTE I + +T E G P GGL D R G +D+ +C+TC+ NM ECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRYAETQEGGRPKLGGLMDPRQGVVDRLSRCQTCAGNMTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--HPKSRLEQIL 138
GH++LAKP+FH GF+ + I+RCVCF CSK+L + + K L+ P+ RL +
Sbjct: 61 GHIDLAKPVFHSGFLVKSIKILRCVCFYCSKLLVNPTTPRIKDILQKSKGQPRKRLAAVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHD-GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CK K CEGGDEID+ + G++P ++ GCG QP + G+++ AE+K
Sbjct: 121 DLCKGKTICEGGDEIDLQREDDPNAGQQPKKQGHGGCGRYQPKIKRAGLDLTAEWK---H 177
Query: 198 KNDDQGQLPEPVERKQTLTAER 219
N+D E+K LTAER
Sbjct: 178 VNEDAQ------EKKIPLTAER 193
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 120/210 (57%), Gaps = 15/210 (7%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+VR VQF IL PDEIR+MSVTE I + + E P GGL D R G ID+ +C TCS
Sbjct: 15 EVREVQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRTSRCLTCSG 74
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL-KIRH- 129
NM ECPGHFGHLELAKP+FH+GF+ L ++RCVC+ CS++L + + L K R
Sbjct: 75 NMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPNHPRMREILTKTRTM 134
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMI 189
+ RL+++ CK K CE D D G EE + GCG QP G+++
Sbjct: 135 QRQRLDKVYEVCKAKRMCEESDTSD--KGQGEPTEEEKKTMHVGCGRFQPNYRRSGLDIS 192
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K + N E+KQ LTAER
Sbjct: 193 AEWKHTNEDNQ---------EKKQVLTAER 213
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 132/236 (55%), Gaps = 27/236 (11%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLG 58
+ + F S + ++ VQF +LSP+EI+ MSV I+ +T + P GL+D +G
Sbjct: 3 LSHTFPHSSAPLRTIQEVQFGLLSPEEIKGMSVCHIEFPETMDESKLRPRERGLNDPHMG 62
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE- 117
+ID+ FKC TC NM ECPGHFGH+ELAKP+FHIGF+ + ++ VCFNC KIL DE
Sbjct: 63 SIDRSFKCATCDENMSECPGHFGHIELAKPVFHIGFITKIKKVLETVCFNCGKILLDENT 122
Query: 118 --------------DDKFKLALKIRHPKSRLEQILCACKTKNKCEG----GDEIDVLSLL 159
+ +F A++IR PK+R + C+ KN CE G+E L
Sbjct: 123 LANICILRCVISKSNPQFVDAMRIRDPKARFNAVWRICRAKNVCESDANEGEEEGPNDAL 182
Query: 160 GHDGEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQT 214
GEE RK K GCG QPT+ DG+ +I +K + ++++ P+P +R T
Sbjct: 183 --PGEEKARKHKHGGCGNAQPTIRKDGLKLIGTWKPSKDEDEEN---PQPTKRNLT 233
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 14/202 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTIDK 62
FT S + V+ +QF ++SP+EI+ MSV I + +T E G P GGL+D LG+ID+
Sbjct: 6 FTHSSAPLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ MGECPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LADE D +F
Sbjct: 66 QFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEE-------PLRKRKSGCG 175
A+ R K R +++ CK K +CE D D + EE L + GCG
Sbjct: 126 AAINTRDAKLRFKRVWAVCKKKRRCENEDRTD-----KNKDEEFAPGMKPTLVESHGGCG 180
Query: 176 ALQPTLTIDGMNMIAEYKAQRK 197
+QP + + + A ++ ++
Sbjct: 181 NVQPQVRQVALQLKAAFEVAQE 202
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats.
Identities = 89/205 (43%), Positives = 126/205 (61%), Gaps = 20/205 (9%)
Query: 22 ILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGH 79
+LSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+ NM ECPGH
Sbjct: 2 MLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGH 61
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQI 137
FGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 62 FGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAYV 121
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAEYKA 194
CK K CEGG+++D L D ++ +K GCG QP++ G+++ AE+K
Sbjct: 122 YDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK- 176
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K ++AER
Sbjct: 177 --HVNEDSQ------EKKIIVSAER 193
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 89/205 (43%), Positives = 126/205 (61%), Gaps = 20/205 (9%)
Query: 22 ILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGH 79
+LSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+ NM ECPGH
Sbjct: 2 MLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGH 61
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQI 137
FGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 62 FGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAYV 121
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAEYKA 194
CK K CEGG+++D L D ++ +K GCG QP++ G+++ AE+K
Sbjct: 122 YDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK- 176
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K ++AER
Sbjct: 177 --HVNEDSQ------EKKIIVSAER 193
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 130/215 (60%), Gaps = 22/215 (10%)
Query: 15 VRMVQFSILSPDEIRKMSVTE---IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
V+ VQF ILSPDEIR+MSVT+ I +T E G P GGL D R G +D+ +C+TC+
Sbjct: 13 VKKVQFGILSPDEIRRMSVTDGGGIRFPETYEGGRPKIGGLMDPRQGVMDRNSRCQTCAG 72
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--H 129
N ECPGHFGH+EL KP+FHIGF+ + I+RCVCF CSK+L + K + ++
Sbjct: 73 NQTECPGHFGHIELGKPVFHIGFITKTIKILRCVCFYCSKMLVSPNNPKIREVVQKSKGQ 132
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP-LRKRK----SGCGALQPTLTID 184
+ RL + CK +N CEGGDE+D+ + ++P L+K + GCG QP++
Sbjct: 133 NRKRLAYVYDLCKGRNICEGGDEMDIQK---DNPDDPSLQKNQKQGHGGCGRYQPSIRRS 189
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K N+D E+K L+AER
Sbjct: 190 GLDLTAEWK---HVNEDSQ------EKKIVLSAER 215
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 89/205 (43%), Positives = 126/205 (61%), Gaps = 20/205 (9%)
Query: 22 ILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGH 79
+LSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+ NM ECPGH
Sbjct: 2 MLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGH 61
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQI 137
FGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL +
Sbjct: 62 FGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAYV 121
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAEYKA 194
CK K CEGG+++D L D ++ +K GCG QP++ G+++ AE+K
Sbjct: 122 YDLCKGKTICEGGEDMD----LTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK- 176
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D E+K ++AER
Sbjct: 177 --HVNEDTQ------EKKIIVSAER 193
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 87/214 (40%), Positives = 124/214 (57%), Gaps = 14/214 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
FT S + KV+ VQF ILSP+EI+ SV +++H + + P GGL D R+GTID+
Sbjct: 6 FTHSAAPLRKVKEVQFGILSPEEIKAYSVAKVEHPEVMDEATHKPKMGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADISDPHF- 124
Query: 123 LALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG--EEPLRKRKSGCGAL 177
A KIRH PK+R+ + CK K CE + + G DG + P + GCG
Sbjct: 125 -ADKIRHVRDPKTRMAVVWGHCKGKMICEADEPKED----GEDGAAQGPAKPGHGGCGHP 179
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVER 211
QP + +G+ + +YK + ++D L +P +R
Sbjct: 180 QPQIRKEGLKLFLQYKKSKDDDEDMKSL-QPDKR 212
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 14/206 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + ++ +QF +LSP+EI+ MSV I + +T + R P GGL+D LG++D+
Sbjct: 6 FAHSSAPLRTIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC NM ECPGHFGH+ELA+P++H GF+K + ++ VC NCSK+LAD D +F
Sbjct: 66 QFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRNDKEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEG-----GDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
A++IR PK R ++ CK K +CE D+ + L GE P GCG
Sbjct: 126 AAMRIRDPKVRFNRVWAVCKKKRRCENEVVKKSDDDEFNPLADAKGELP---GHGGCGND 182
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQG 203
PT+ + + A++ + D++G
Sbjct: 183 HPTVRQQALTLYAQFDTK----DEEG 204
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 10/213 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + ++ +QF +LSP+EI+ MSV I + +T + R P GL+D RLG+ID+
Sbjct: 6 FTHSDAPLKTIQEIQFGLLSPEEIKNMSVVHILYPETMDESRMKPRDQGLNDPRLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC TC M ECPGHFGH+ELAKP+FH GF+K + I+ VC NC KIL D + +K
Sbjct: 66 QFKCGTCDQQMSECPGHFGHIELAKPVFHPGFIKKIKKILEMVCHNCGKILLDRSNPAYK 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGH-DGEEPLRKRKSGCGALQPTL 181
A+ IR PK R + I CK K C+ DV + G+ +G+E GCG LQP +
Sbjct: 126 AAVSIRDPKRRFDTIWRLCKPKMICDS----DVSNEEGNSEGKEQAVSIHGGCGNLQPEV 181
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQT 214
+ + +K + D+ G+ +P +R T
Sbjct: 182 RQQSLTLTGTWKVPK---DEDGETAQPEKRNIT 211
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats.
Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 14/206 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + ++ +QF +LSP+EI+ MSV I + +T + R P GGL+D LG++D+
Sbjct: 6 FAHSSAPLRTIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC NM ECPGHFGH+ELA+P++H GF+K + ++ VC NCSK+LAD D +F
Sbjct: 66 QFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRNDKEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEG-----GDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
A++IR PK R ++ CK K +CE D+ + L GE P GCG
Sbjct: 126 AAMRIRDPKVRFNRVWAVCKKKRRCENEVVKKSDDDEFNPLADAKGELP---GHGGCGND 182
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQG 203
PT+ + + A++ + D++G
Sbjct: 183 HPTVRQQALTLYAQFDTK----DEEG 204
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 79/186 (42%), Positives = 123/186 (66%), Gaps = 15/186 (8%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + ++ +QF +LSP+EI+ MSV I + +T + R P GGL+D LG++D+
Sbjct: 6 FTHSSAPIRTIKEIQFGLLSPEEIKGMSVCHIVYPETMDESRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ NM ECPGHFGH+EL++P+FH GF++ + ++ VC NCSK+LAD ED+++
Sbjct: 66 QFKCKTCTENMTECPGHFGHIELSRPVFHPGFIRRVKKLLEMVCHNCSKVLADREDEQYA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGE-EPLRKRKS------GCG 175
A++IR PK R +++ CK+K +CE +E+ G DGE +P + ++ GCG
Sbjct: 126 AAMRIRDPKVRFKRVWDICKSKKRCE--NEVRK----GKDGEFKPDSENQAAEGGHGGCG 179
Query: 176 ALQPTL 181
QP +
Sbjct: 180 NTQPVI 185
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 124/203 (61%), Gaps = 15/203 (7%)
Query: 23 LSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHF 80
LSPDEIR+MSVTE I + E G P GGL D R G ID++ +C+TC+ NM ECPGHF
Sbjct: 1 LSPDEIRRMSVTEGGIRFSEIYEGGRPKLGGLMDPRQGVIDRQSRCQTCAGNMTECPGHF 60
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQIL 138
GH++L KP+FHIGF+ + I+RCVCF CSK+L + + K K + +K + P+ RL +
Sbjct: 61 GHIDLGKPVFHIGFITKTIKILRCVCFYCSKMLVNPTNPKIKEIVMKSKGQPRKRLAHVY 120
Query: 139 CACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQR 196
CK KN CEGGDE+D+ D G + ++ GCG QP + +++ AE+K
Sbjct: 121 DLCKGKNICEGGDEMDIQKDNPDDPSGMQGKKQGHGGCGRYQPNIRRIALDLTAEWK--- 177
Query: 197 KKNDDQGQLPEPVERKQTLTAER 219
N+D E+K LTAER
Sbjct: 178 HVNEDSQ------EKKIVLTAER 194
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 15/207 (7%)
Query: 5 FTFSPFK--VAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTI 60
TF P + ++ +QF +LSP+EI+ MSV I++ +T + P GL+D RLG+I
Sbjct: 4 LTFQPSSAPLRSIQEIQFGLLSPEEIKNMSVAPIEYPETMDEANQRPRHMGLADPRLGSI 63
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D+ KC TC NM ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE +
Sbjct: 64 DRAIKCGTCDENMSECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILLDESNAD 123
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGAL 177
FK AL+ R PK R + + ACK K C D+L L D + ++ K GCG
Sbjct: 124 FKNALRFRDPKRRFDAMWKACKPKMVC------DMLVLADDDAPDKSQEPKHDHGGCGNR 177
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQ 204
QP + +G+ + +KA +K+D++ Q
Sbjct: 178 QPEIRKEGLKLTGTWKA--RKDDEESQ 202
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 18/224 (8%)
Query: 5 FTFSPFK--VAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTI 60
TF P + ++ +QF +LSP+EI+ MSV I++ +T + P GL+D RLG+I
Sbjct: 4 LTFQPSSAPLRSIQEIQFGLLSPEEIKNMSVAPIEYPETMDEANQRPRHMGLADPRLGSI 63
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D+ KC TC NM ECPGHFGH+ELA P+FH+GFM ++ VC NC KIL DE +
Sbjct: 64 DRAIKCGTCDENMSECPGHFGHIELAVPVFHVGFMTKKKKLLETVCHNCGKILLDESNAD 123
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG-----EEPLRKRKSGCG 175
FK AL+ R PK R + I ACK K C+ + + DG +EP + GCG
Sbjct: 124 FKNALRFRDPKRRFDAIWKACKPKMVCD-------MMPVADDGIPDKSQEP-KHDHGGCG 175
Query: 176 ALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+QP + +G+ + +KA RK+++D P+ + L R
Sbjct: 176 NIQPEIRKEGLKLTGTWKA-RKEDEDPQDEKRPITPQNALNIFR 218
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 6/207 (2%)
Query: 3 NCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTI 60
N F S +VR +QF I+SPDEI+ SV +I+H +T E G P GGLSD R+GTI
Sbjct: 4 NQFVHSSAPTRRVRTIQFGIMSPDEIKGFSVAKIEHPETYEEGGVHPKVGGLSDPRMGTI 63
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D+ KC+TC +M CPGHF H+ELA+P++H+GF+ + I+ CVC C K+ +D D
Sbjct: 64 DRNMKCQTCGEDMSTCPGHFAHIELARPVYHVGFLNRVKKILECVCVQCGKLKSDLNTDP 123
Query: 121 F--KLALKIRHPKSRLEQILCACKTKNKCE--GGDEIDVLSLLGHDGEEPLRKRKSGCGA 176
++ + R PK R + C+ KN CE DE E+ K GCG
Sbjct: 124 VLAQMVRRARDPKRRFVMVHKHCRGKNICEADANDEKPENPEEPPRPEDEQPKGHGGCGH 183
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQG 203
QP + +G+ M +Y ++ + DD+G
Sbjct: 184 AQPQIRKEGLKMFLQYTRRKGEEDDEG 210
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 82/212 (38%), Positives = 122/212 (57%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F S + ++ +QF + SP+EI+ MSV I + +T + P GL+D RLG+ID+
Sbjct: 6 FAHSDAPLRTIQEIQFGLFSPEEIKNMSVCHILYPETMDESKMKPREQGLNDPRLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC TC NM ECPGHFGH+ELAKP++H GF+K ++ VC NC K+ D + +K
Sbjct: 66 QFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSNPAYK 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ IR PK R E I CK K CE +++ G D +E +K GCG +QP +
Sbjct: 126 AAVSIRDPKRRFEAIWKLCKVKMVCESDVQMNEEEFNG-DPKEAAKKSHGGCGNIQPEVR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQT 214
+ + +KA + D+ G+ +P +R+ T
Sbjct: 185 QTALALWGTWKAPK---DEDGEAVQPDKRQIT 213
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats.
Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + V+ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTVKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD--EEDDK 120
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI AD + D K
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTNQSDSK 125
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
F AL++R PK R + I K CE D + +P+R R GCG QPT
Sbjct: 126 FLEALRMRDPKRRFDHIWRLSKDVLICEADPPADEDEPFSKESSKPVR-RHGGCGNAQPT 184
Query: 181 LTIDGMNMIAEYKAQRKKND-DQGQLPE 207
+ +G+ ++ +K + D D Q PE
Sbjct: 185 IRKEGITLVGTWKPNKSMMDEDDMQQPE 212
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 82/218 (37%), Positives = 126/218 (57%), Gaps = 9/218 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD--EEDDK 120
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI AD + D K
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKADSIQSDPK 125
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
F AL++R PK R + I K C+ D + +P+R GCG QPT
Sbjct: 126 FLEALRMRDPKRRFDHIWRISKDILICQADPPPDDDDPFSKESSKPVR-HHGGCGNSQPT 184
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
+ +G+ ++ +K + ++D Q PE K+T+T +
Sbjct: 185 IRKEGITLVGTWKPNKMLDEDDMQQPE----KKTITPQ 218
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 93/213 (43%), Positives = 125/213 (58%), Gaps = 22/213 (10%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ + VQF ILSPDEI++MSVT I + +T E G P GL D R G +D+ +C+TC
Sbjct: 13 IRNINRVQFGILSPDEIKRMSVTPGGIRYAETYEAGKPKLCGLLDPRQGPVDRSSRCQTC 72
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLALKIR 128
+ + ECPGHFGH+ELA+P+FHIGF+ + I+RCVCF CSK+L + D K + K R
Sbjct: 73 AGTVNECPGHFGHIELARPVFHIGFLVKSIKILRCVCFYCSKLLIKKSDPKVIDIISKTR 132
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEE-PLRKRKSGCGALQPTLTIDGM 186
+ RL+ I CK+KN C+ D G D E +K SGCG QP + +G+
Sbjct: 133 GRLRVRLQHIYDLCKSKNICQNDD--------GEDAEGLDEKKEHSGCGRHQPIIRRNGL 184
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+K K N+D ERK LTAER
Sbjct: 185 ELTAEWK---KINEDSQ------ERKINLTAER 208
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 86/216 (39%), Positives = 128/216 (59%), Gaps = 14/216 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + V +QF ++SP+EI+ MSV I + +T + + P GGL+DL LG+ID+
Sbjct: 6 FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHIVYPETMDENKTKPRDGGLNDLLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
F+C+TC+ MGECPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 SFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADSRDPEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGD---EIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A+ R PK R ++ ACK K +CE + + D + G PL GCG +QP
Sbjct: 126 AAINTRDPKVRFHRVWEACKKKKRCENDEPKQKDDEFAATLKTG--PLEGH-GGCGNVQP 182
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTL 215
+ + + A ++ D+ GQ ++K+T+
Sbjct: 183 AVRQGALQLKAAFEVTV---DEDGQ---KTKKKETI 212
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 122/205 (59%), Gaps = 11/205 (5%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECP 77
VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C TC+ N+ +CP
Sbjct: 18 VQFGILGPEEIKRMSVAHVEFPEIYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCP 77
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK--IRHPKSRLE 135
GHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + + LK +PK RL
Sbjct: 78 GHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVMDILKKTTGNPKKRLA 137
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIAEYKA 194
I CK+K+ CEG E+ D K+ SGCG QP+ G+++ AE+K
Sbjct: 138 LIYDLCKSKSVCEGAAELKDEMPDDPDDPMNDSKKIPSGCGRYQPSYRRVGIDINAEWK- 196
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
+ N+D ERK LTAER
Sbjct: 197 -KNVNEDTQ------ERKIMLTAER 214
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 84/211 (39%), Positives = 123/211 (58%), Gaps = 24/211 (11%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGE 75
+QF +LSPDEI+KMSV +I++ +T +R P GL+D RLGTID+ +KC TC + E
Sbjct: 1 IQFGLLSPDEIKKMSVAKIEYPETMDEQRQRPREAGLNDPRLGTIDRTWKCATCEEGINE 60
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGH+ELA P+FHIGF+ + ++ VC NC KI ++ D K+ AL+ R PK R +
Sbjct: 61 CPGHFGHIELASPVFHIGFLTKIKKLLETVCLNCGKIKVNQNDPKYLDALRYRDPKRRFD 120
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR------KSGCGALQPTLTIDGMNMI 189
I K CE + D ++P +R GCG QPT+ +G++++
Sbjct: 121 AIWRLSKDITTCEADPVV--------DEDDPFAERVERVPGHGGCGNAQPTIRREGLSLV 172
Query: 190 AEYKAQRKK----NDDQGQLPEPVERKQTLT 216
+K +R + +DD Q PE K+T+T
Sbjct: 173 GTWKPRRSRDMLGDDDDMQQPE----KRTIT 199
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats.
Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 6/216 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F S + V+ +QF + SP+EI+ MSV I++ +T +R P GL+D +LGTID+
Sbjct: 4 FAHSQAPLRTVQEIQFGLFSPEEIKNMSVCHIEYPETMDEQRNRPREKGLNDPKLGTIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
C TC + ECPGHFGH+ELA P+FH+GF+ + I+ VC NC K+L DE + +F
Sbjct: 64 NTMCATCGESQQECPGHFGHIELAAPVFHVGFITKIKKILESVCNNCGKLLEDERNPQFA 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+KIR PK R EQI CK+K C + D G D ++P GCG +QPT+
Sbjct: 124 QAVKIRDPKRRFEQIAKLCKSKMDCAMDEPADANDGFGEDPKKPKIAGHGGCGNVQPTIR 183
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
+ + A K + ++ ++ E K+T+T +
Sbjct: 184 KVQLTLTASTKVAKSEDGNE----EGGVEKKTITPQ 215
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 120/209 (57%), Gaps = 16/209 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGM-PMAGGLSDLRLGTIDK 62
FT S + +V VQF ILSP+EIR MSV +I+ +T E G+ P GL D RLGTID+
Sbjct: 6 FTPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDETGLRPRVAGLLDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC M ECPGHFGH+ELAKP+FHIGF+ + I+ CVC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMAECPGHFGHIELAKPVFHIGFLTKIKKILECVCWNCGKLKIDPSNPKFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR----KRKSGCGALQ 178
+ R PK+RL I CK K CE G G D +P R GCG Q
Sbjct: 126 ETQRFRDPKNRLNAIWNICKAKMVCETGVS------AGSDAFDPNRVGGELGHGGCGNAQ 179
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
PT+ +G+ + + KK D LPE
Sbjct: 180 PTIRKEGLKLWGSW----KKGKDDSDLPE 204
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 82/213 (38%), Positives = 124/213 (58%), Gaps = 8/213 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + V +QF ++SP+EI+ MSV I + +T + + P GGL+DL LG+ID+
Sbjct: 6 FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHIVYPETMDENKTKPRDGGLNDLLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
F+C+TC+ MGECPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 SFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADSRDPEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R PK R ++ ACK K +CE + + + GCG +QP +
Sbjct: 126 AAINTRDPKVRFHRVWEACKKKKRCENDEPKQKDDEFAATLKTGPMEGHGGCGNVQPAVR 185
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTL 215
+ + A ++ D+ GQ ++K+T+
Sbjct: 186 QGALQLKAAFEVTV---DEDGQ---KTKKKETI 212
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 80/200 (40%), Positives = 116/200 (58%), Gaps = 4/200 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + V +QF ++SP+EI+ MSV I + +T E + P GGL+D LG+ID+
Sbjct: 6 FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHITYPETMEENKTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+F+C+TC+ MGECPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD+ D +F
Sbjct: 66 QFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADDRDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R PK R ++ CK K +CE + G P + GCG +QP +
Sbjct: 126 NAINTRDPKVRFNRVWEVCKKKRRCENDEAKQKDDEFGTKTGPP--RGHGGCGNMQPNVR 183
Query: 183 IDGMNMIAEYKAQRKKNDDQ 202
+ + A + D Q
Sbjct: 184 QAALQLKAAFDEVTVDEDGQ 203
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats.
Identities = 82/209 (39%), Positives = 120/209 (57%), Gaps = 12/209 (5%)
Query: 3 NCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTI 60
N F S +VR +QF I+ PDEI+ SV +I+H +T E G P GGLSD R+GTI
Sbjct: 4 NQFVHSSAPTRRVRTIQFGIMGPDEIKGFSVAKIEHPETYEEGGIHPKVGGLSDPRMGTI 63
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D+ KC+TC +M CPGHF H+ELA+ ++H+GF+ + I+ CVC CSK+ +D D
Sbjct: 64 DRNMKCQTCGEDMSTCPGHFAHIELARAVYHVGFLNRVKKILECVCVQCSKLKSDVVTDP 123
Query: 121 F--KLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPL----RKRKSGC 174
+A +I+ PK R + C+ KN CE DV + +EP+ K GC
Sbjct: 124 ALELIARRIKDPKKRFTAVHQLCRGKNICEA----DVNDDKPENPDEPVPDDQPKGHGGC 179
Query: 175 GALQPTLTIDGMNMIAEYKAQRKKNDDQG 203
G LQP + +G+ M +Y ++ + D++G
Sbjct: 180 GHLQPQIRKEGLKMFLQYTKRKGEEDEEG 208
>gi|380488223|emb|CCF37524.1| DNA-directed RNA polymerase II subunit RPB1, partial
[Colletotrichum higginsianum]
Length = 565
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 11/198 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + V +QF +++P++I+ MSV + +T + R P GGL+D LG+ID+
Sbjct: 6 FTHSSAPIKTVEEIQFGLMAPEDIKNMSVCHCVYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TCS MGECPGHFGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F
Sbjct: 66 QFKCKTCSQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGAL 177
A+ R PK R ++ CK K +CE +V DGE L +++ GCG +
Sbjct: 126 QAVNTRDPKVRFNRVWNICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNHGGCGNI 181
Query: 178 QPTLTIDGMNMIAEYKAQ 195
QP + + +IA+++AQ
Sbjct: 182 QPRVRHKALQLIAKFEAQ 199
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 90/207 (43%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECP 77
VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C TC+ N+ +CP
Sbjct: 18 VQFGILGPEEIKRMSVAHVEFPEIYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCP 77
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--HPKSRLE 135
GHF HLELAKP+FHIGF+ L I+RCVCF C ++L D+ + + LK + K RL
Sbjct: 78 GHFAHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVIDILKKTSGNAKKRLA 137
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPL---RKRKSGCGALQPTLTIDGMNMIAEY 192
I CK+K+ CEG E + L D ++P+ +K +GCG QP+ G+++ AE+
Sbjct: 138 LIYDLCKSKSVCEGAAEKE--EGLPDDVDDPMSGEKKIPAGCGRYQPSYRRVGIDINAEW 195
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
K + N+D ERK LTAER
Sbjct: 196 K--KNVNEDTQ------ERKIMLTAER 214
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats.
Identities = 72/192 (37%), Positives = 115/192 (59%), Gaps = 14/192 (7%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
FSP ++ KVRMV+F +L P+ +++MSV E+ + G+P GGL+DLR+GT D R C
Sbjct: 11 FSPCELKKVRMVEFGVLDPELVKRMSVCEVSLSELYRDGVPQTGGLNDLRMGTTDPRHVC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC + C GHFGH+ LAKPM+H GF+ T+L I+RCVC+NCS++L D++D + + +K
Sbjct: 71 TTCCMGLQHCNGHFGHIVLAKPMYHYGFLTTVLKILRCVCYNCSRLLCDKDDPRIRNLIK 130
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
R SRL ++ C + +C+ + D + GCG QP T +G
Sbjct: 131 TRATSSRLSRLADVCSSSFRCQNASQSD--------------SKLKGCGYPQPKYTREGP 176
Query: 187 NMIAEYKAQRKK 198
++ ++ ++++
Sbjct: 177 GIMIQFSQKQRQ 188
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats.
Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 8/217 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDSKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL++R PK R + I K CE D + +P R GCG QPT+
Sbjct: 126 EALRMRDPKRRFDHIWRLSKDITICEADPPPDEDEPYAKESSKPTRMH-GGCGNAQPTIR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQG-QLPEPVERKQTLTAE 218
+G+ ++ +K + D+ Q PE K+T+T +
Sbjct: 185 KEGITLVGTWKPSKSMMDEMDMQQPE----KKTITPQ 217
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats.
Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 8/217 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDSKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL++R PK R + I K CE D + +P R GCG QPT+
Sbjct: 126 EALRMRDPKRRFDHIWRLSKDITICEADPPPDEDEPYAKESSKPTRMH-GGCGNAQPTIR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQG-QLPEPVERKQTLTAE 218
+G+ ++ +K + D+ Q PE K+T+T +
Sbjct: 185 KEGITLVGTWKPSKSMMDEMDMQQPE----KKTITPQ 217
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 26/215 (12%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F S ++ +V+ VQF +LSP+EIRKMSV E++ +T E+G P GGLSD R+GT+D+
Sbjct: 7 FPHSTAELRRVKAVQFGVLSPEEIRKMSVCEVETAETYEKGRPKRGGLSDPRMGTMDRSM 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKL 123
CET + + PG+FGHLELAKP++H GF+ ++ ++RCV ++ SK+L D+ DD +F
Sbjct: 67 TCETDGMDSKDTPGYFGHLELAKPVYHHGFINNVVRVLRCVGYSSSKLLLDKNDDPRFVE 126
Query: 124 ALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
+KIR+PK RL++ CKTK C G QP +
Sbjct: 127 IMKIRNPKHRLKKFADTCKTKKIC------------------------PSTGTPQPQYRL 162
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
DGM + AE+K + +D G + ERK +TAE
Sbjct: 163 DGMKITAEFKVSADE-EDSGMMSYGGERKIQVTAE 196
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1746
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 81/212 (38%), Positives = 122/212 (57%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F S + ++ +QF + SP+EI+ MSV I + +T + P GL+D RLG+ID+
Sbjct: 6 FAHSDAPLRTIQEIQFGLFSPEEIKNMSVAHILYPETMDESKMKPREQGLNDPRLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC TC NM ECPGHFGH+ELAKP++H GF+K ++ VC NC K+ D + +K
Sbjct: 66 QFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSNPAYK 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ IR PK R E I CKTK C+ +++ D +E +K GCG +QP +
Sbjct: 126 AAVSIRDPKRRFEAIWKLCKTKMICDSDVQMNE-EEFNADPKEAAKKSHGGCGNIQPEVR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQT 214
+ + +KA + D+ G+ +P +R+ T
Sbjct: 185 QTALALWGTWKAPK---DEDGEAVQPDKRQIT 213
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats.
Identities = 80/193 (41%), Positives = 118/193 (61%), Gaps = 4/193 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTIDK 62
FT S + V+ +QF ++SP+EI+ MSV I + +T E G P GGL+D LG+ID+
Sbjct: 6 FTHSSAPLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ MGECPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LADE D +F
Sbjct: 66 QFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
A+ R K R +++ CK K +CE D E + + + + GCG +QP
Sbjct: 126 AAINTRDAKLRFKRVWAVCKKKRRCENDDRSEKNKDEEFAPGMKPAVVESHGGCGNVQPQ 185
Query: 181 LTIDGMNMIAEYK 193
+ + + A ++
Sbjct: 186 VRQVALQLKAAFE 198
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1770
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 10/216 (4%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTIDKR 63
T+S V KVR VQF I+SP+EI+ SV +I+H + + P GGL D R+GTID+
Sbjct: 9 TYSAAPVHKVREVQFGIMSPEEIKAYSVAKIEHSEVMDESGYRPRVGGLMDPRMGTIDRN 68
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKL 123
+KC+TC G+CPGHFGH+ELA+P++H GF+ + I+ C+C NC K+ AD DD F++
Sbjct: 69 YKCQTCGEGPGDCPGHFGHIELARPVYHAGFLVKVKKILECICVNCGKLKADIGDDTFRV 128
Query: 124 ALK-IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
+K +PK RL+ + CK K CE D + E+P + GCG +QP +
Sbjct: 129 LVKRADNPKRRLQIVWEYCKGKMLCESDDMKEEEEDP----EKPQKPSHGGCGHIQPLIR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQG-QLPEPVERKQTLTA 217
DG+ + YK ++ +DD+ +L +P K+ LTA
Sbjct: 185 KDGLKLFLVYKKRKGDDDDEDVKLAQP--EKRLLTA 218
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 21/219 (9%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
+P ++ V VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C
Sbjct: 10 APLRI--VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC+ N+ +CPGHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + LK
Sbjct: 68 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 127
Query: 128 --RHPKSRLEQILCACKTKNKCEGGDEID-----VLSLLGHDGEEPLRKRKSGCGALQPT 180
+ K RL I CK K+ CEG E + +DG +K GCG QP+
Sbjct: 128 TGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDG----KKVAGGCGRYQPS 183
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K + N+D ERK LTAER
Sbjct: 184 YRRVGIDINAEWK--KNVNEDTQ------ERKIMLTAER 214
>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit
[Schistosoma mansoni]
Length = 1900
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 90/223 (40%), Positives = 130/223 (58%), Gaps = 26/223 (11%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE---IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+VR +QF ILSPDEI+++SVT I + +T E G P GGL D R G +D+ C+TCS
Sbjct: 13 EVRALQFGILSPDEIKELSVTPDGGIKYAETMEGGKPKLGGLMDPRQGCVDRSSICQTCS 72
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH- 129
++ CPGHFGH+ELAKP+FHIGF+K + ++RCVCF CSKIL D + + + L+
Sbjct: 73 GSVSSCPGHFGHVELAKPVFHIGFLKKTMKVLRCVCFYCSKILVDVQSSRIQEILRKTKG 132
Query: 130 -PKSRLEQILCACKTKNKCEGGD-------EIDVLSLLGHDGEEPL-----RKRKSGCGA 176
+ R+ + CKT+++C D ++ + S + +PL ++SGCG
Sbjct: 133 DNRRRMSFMYEECKTRSECISNDDQVQSENDVSLSSKVSFGVHKPLFFFVTTVKRSGCGR 192
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
QP +G+ + AE+K K N+ E ERK LTAER
Sbjct: 193 YQPRFRRNGLELTAEWK---KVNE------ESQERKINLTAER 226
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 83/220 (37%), Positives = 126/220 (57%), Gaps = 18/220 (8%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF +LSP+EI+++SV +++ +T +R P G +D RLGT+D+
Sbjct: 6 FPYSKAPLRTIKEIQFGLLSPEEIKRLSVVHVEYPETMDEQRMRPRTKGPNDPRLGTLDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGH+GH+ELA P++HIGF+ ++ VC NC KI AD D KF+
Sbjct: 66 QYYCETCEEGQKECPGHYGHIELATPVYHIGFLTKTKKLLETVCHNCGKIKADMSDPKFQ 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-------GCG 175
AL+IR PK R + I K N CE D I + E+P K S GCG
Sbjct: 126 DALRIRDPKRRFDIIWRLSKDVNICE-ADPIP-------EDEDPFSKEASKPHKGHGGCG 177
Query: 176 ALQPTLTIDGMNMIAEYKAQRKK-NDDQGQLPEPVERKQT 214
QPT+ +G++++ +K + DD +P+P +R T
Sbjct: 178 NAQPTIRKEGLSLVGTWKPNKANMMDDDVDMPQPEKRTIT 217
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 21/219 (9%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
+P ++ V VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C
Sbjct: 10 APLRI--VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC+ N+ +CPGHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + LK
Sbjct: 68 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 127
Query: 128 --RHPKSRLEQILCACKTKNKCEGGDEID-----VLSLLGHDGEEPLRKRKSGCGALQPT 180
+ K RL I CK K+ CEG E + +DG +K GCG QP+
Sbjct: 128 TGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDG----KKVAGGCGRYQPS 183
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K + N+D ERK LTAER
Sbjct: 184 YRRVGIDINAEWK--KNVNEDTQ------ERKIMLTAER 214
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 30/216 (13%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F S ++ +V VQF +LSPDEIRKMSV I+ +T E+G P GGLSD R+GT+D+
Sbjct: 7 FPHSTAELCRVNAVQFGVLSPDEIRKMSVCAIETSETYEKGRPKRGGLSDPRMGTMDRGA 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILA-DEEDDKFKL 123
CET + + PG+FGHLELAKP++H GF+ +L I+RCV ++ S++L +ED KF
Sbjct: 67 VCETDGCDSVQTPGYFGHLELAKPVYHHGFINVVLRILRCVGYSSSQLLLHKDEDPKFAQ 126
Query: 124 ALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
++I++PK+RL+++ ACKTK+ C G QP +
Sbjct: 127 LMRIKNPKNRLKKLTDACKTKSVC------------------------PYTGTAQPQYRL 162
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+GM + AE+K + D+ LPE ERK +TAER
Sbjct: 163 EGMKITAEFKHR-----DEELLPEGGERKVIVTAER 193
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 84/185 (45%), Positives = 114/185 (61%), Gaps = 7/185 (3%)
Query: 31 MSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKP 88
MSVTE I + +TTE G P GGL D R G I++ +C+TC+ NM ECPGHFGH+ELAKP
Sbjct: 1 MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60
Query: 89 MFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHPKSRLEQILCACKTKNK 146
+FH+GF+ + ++RCVCF CSK+L D + K K LA PK RL + CK KN
Sbjct: 61 VFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNI 120
Query: 147 CEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMNMIAEYKAQRKKNDDQG 203
CEGG+E+D + +G+E L K K GCG QP + G+ + AE+K + + ++
Sbjct: 121 CEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKK 180
Query: 204 QLPEP 208
L P
Sbjct: 181 ILLSP 185
>gi|156840771|ref|XP_001643764.1| hypothetical protein Kpol_1019p27 [Vanderwaltozyma polyspora DSM
70294]
gi|156114388|gb|EDO15906.1| hypothetical protein Kpol_1019p27 [Vanderwaltozyma polyspora DSM
70294]
Length = 364
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 119/203 (58%), Gaps = 12/203 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S V ++ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPVRTIKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNV 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FHIGF+ + + CVC +C K+L DE +++ A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHIGFISKIKKVCECVCMHCGKLLLDEHNEQMNQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+KI+ PK R + CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 IKIKDPKKRFNAVWTLCKTKMIC----ETDVPS---EDDPTKLVSR-GGCGNAQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ ++ +K + ND G PE
Sbjct: 178 GLKLVGSWKKDKNTND--GDEPE 198
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 7/216 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F S + ++ +QF +LSP+EI+ MSV I + +T + G P GL+D RLG+ID+
Sbjct: 6 FAHSDAPLRTIQEIQFGLLSPEEIKNMSVAHILYPETMDEGKMKPRDQGLNDPRLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC TC + M ECPGHFGH+ELAKP++H GF+K + ++ C NC KIL D + +FK
Sbjct: 66 GFKCATCDAGMAECPGHFGHIELAKPVYHPGFLKKIKKLLEIACHNCGKILLDRSNPQFK 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ +R PK R E I CK K C+ +D R GCG QP +
Sbjct: 126 AAVSMRDPKRRFEAIWRLCKPKMICDADISVDDDEFAADPKAAAKRPSHGGCGNTQPEVR 185
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
+ + +K + ++++ GQ PE K+ +T E
Sbjct: 186 QTALQLWGTWKVPKDEDNENGQ-PE----KKLITPE 216
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 128/216 (59%), Gaps = 16/216 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDK 62
F +S + ++ VQF + SP+E+R +SV +I+ +T + A GGL+D RLG+ID+
Sbjct: 4 FPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+KC+TC M ECPGHFGH+ELAKP+FHIGF+ + + VC +C K+L DE +++ +
Sbjct: 64 NYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMR 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+KI+ PK R + CK K CE + + + + + GCG +QP++
Sbjct: 124 QAIKIKDPKRRFNAVWTLCKAKMVCE--------TEVPSPDDPTVFLSRGGCGHIQPSIR 175
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
DG++++ +K + KN D PE K+ ++AE
Sbjct: 176 KDGLSLVGTWK--KDKNADDSDQPE----KRIISAE 205
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 76/192 (39%), Positives = 114/192 (59%), Gaps = 14/192 (7%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+SP ++ ++R ++F +L P+ +++MSV EI + G+P GGL+DLR+GT D R C
Sbjct: 11 YSPCELKRIRAIEFGLLDPELVKRMSVCEITLTELYREGIPQTGGLNDLRMGTTDPRHIC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TCS ++ CPGHFGH+ LAKPM+H GFM T+L I+RCVCFNCSK L ++ED + +L LK
Sbjct: 71 LTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKFLLNKEDPRVQLILK 130
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
RL + C C ID S + GCG QP+ T +G
Sbjct: 131 SPSSSFRLNHLSELCSASRTC----RIDTQS----------NSKIEGCGYPQPSYTKEGP 176
Query: 187 NMIAEYKAQRKK 198
N++ ++ ++++
Sbjct: 177 NLMIQFSQKQRE 188
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 81/205 (39%), Positives = 123/205 (60%), Gaps = 11/205 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + ++ +QF +LSP+EI+ MSV I + +T + R P GGL+D LG++D+
Sbjct: 6 FAHSSAPLRTIKEIQFGLLSPEEIKAMSVCHILYPETMDETRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ NM ECPGHFGH+ELA+P++H GF+K ++ VC NCS++LAD D ++
Sbjct: 66 QFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSRVLADRSDPQYA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGG----DEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R +++ CK+K +CE E + G+ E P+ GCG Q
Sbjct: 126 AAMKIRDPKIRFKRVWDICKSKRRCENDIPKQAEDGDYNPNGNAQEAPVGGH-GGCGNAQ 184
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQG 203
P + + + A Y+ + DD G
Sbjct: 185 PVIRQQALTLWAHYEHR----DDDG 205
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats.
Identities = 82/203 (40%), Positives = 116/203 (57%), Gaps = 24/203 (11%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + V +QF +LSP+EI+ MSV I + +T E + P GGL+D LG+ID+
Sbjct: 6 FPHSSAPLKTVEEIQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TCS M ECPGHFGH+ELAKP++H GF+K + ++ VC NCSK+LADE D +F
Sbjct: 66 QFKCKTCSQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDV------------LSLLGHDGEEPLRKR 170
A+ R PK R +++ CK K KCE + D + L GH
Sbjct: 126 TAIHTRDPKLRFKRVWAVCKKKRKCENEERQDKNKDEEFAPGVKNVVLEGH--------- 176
Query: 171 KSGCGALQPTLTIDGMNMIAEYK 193
GCG +QP + + + A ++
Sbjct: 177 -GGCGNMQPQVRQAALQLKAAFE 198
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 124/218 (56%), Gaps = 21/218 (9%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPM--AGGLSDLRLG 58
M F S + ++ VQF ++SP+EIR +SV +I + +T ++ GGL+D RLG
Sbjct: 1 MSRQFPHSSAPLKSIKEVQFGLMSPEEIRAISVAKIVYPETFDQATKRFKEGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ +KC+TC +M ECPGHFGH+EL +P+FHIGF+ + ++ +CF+C K+L DEE+
Sbjct: 61 SIDRNYKCQTCGEDMSECPGHFGHIELTRPVFHIGFIAKIKKVLESICFHCGKLLLDEEN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A+KIR PK R + CK+K CE + + ++ GCG Q
Sbjct: 121 PLMAQAIKIRDPKKRFNAVWGLCKSKMICETSE---------------IEGKRGGCGHTQ 165
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLT 216
PT+ DG+ + +K+ + D+ +P R+ T T
Sbjct: 166 PTIRRDGLKLWGTWKSNKNFEDND----QPERRQLTPT 199
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 89/220 (40%), Positives = 124/220 (56%), Gaps = 16/220 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + ++ VQF +LSP+EI+ MSV I + +T + R P GL+D RLG+ID+
Sbjct: 6 FTHSDAPLRTIQEVQFGLLSPEEIKNMSVCHILYPETMDETRTKPRDQGLNDPRLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC TC NM ECPGHFGH+ELAKP++H GF+K ++ VC NC ++L D + +K
Sbjct: 66 QFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGRVLLDRSNPAYK 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGE---EPLRKR-KSGCGALQ 178
A+ IR PK R + I CK K C+ S G DG + L KR GCG Q
Sbjct: 126 AAVNIRDPKRRFDTIWRLCKPKMICDSD-----ASQEGADGSVDPKDLAKRAHGGCGNTQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
P + + + +K K D++G PE K+ +T E
Sbjct: 181 PEVRQVALELFGTWKVP-KDEDNEGAQPE----KRAITPE 215
>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1667
Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 125/232 (53%), Gaps = 33/232 (14%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ KV V+F ILSP + T + P+ GGLSD RLG++D R C
Sbjct: 11 YSSAELKKVASVEFGILSPQQ-------------TIAQSEPVRGGLSDPRLGSVDPRTPC 57
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
ETC M +CPGHFGHLELAKPM+H GF+KT L +RCVC+ CSK+LAD D K L+
Sbjct: 58 ETCGMKMRDCPGHFGHLELAKPMYHGGFLKTTLKALRCVCYYCSKLLADPNDLVIKRVLR 117
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLS-------------LLGHDGEEPLRKRKS- 172
+++PK+RL+ + CK++ C+ G V+ + H G S
Sbjct: 118 VKNPKTRLQAMSVICKSRKVCDSGGMESVMKSGGKQQDEDIDDEDVAHTGTLVHPSTTSL 177
Query: 173 ------GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
GCG QP+ T+ GM +I + + + ++ G + + + K+ L+AE
Sbjct: 178 VVLNMLGCGYAQPSYTVQGMQIIVSFPSSANEENEDGVVVDQGDTKRPLSAE 229
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
kawachii IFO 4308]
Length = 1747
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 3/205 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P++HIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL++R PK R + I K CE D + +P+R GCG QP +
Sbjct: 126 EALRMRDPKRRFDHIWRLSKDVLICEADPPPDDDEPFSKENSKPVRMH-GGCGNAQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPE 207
+G+ ++ +K + ++ Q PE
Sbjct: 185 KEGITLVGTWKPNKMMDEMDMQQPE 209
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats.
Identities = 78/190 (41%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF +LSP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLLSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAINTRDAKLRFNRVWAVCKKKRRCENEDRSEKNDEEFSPGMKPMVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDK 62
F +S + V+ VQF I SP+E+R +SV +I+ +T + A GGL+D RLG+ID+
Sbjct: 4 FPYSSAPLRTVKEVQFGIFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+KC+TC M +CPGHFGH+ELAKP+FHIG++ + + CVC +C K+L DE + +
Sbjct: 64 NYKCQTCGEGMNDCPGHFGHIELAKPVFHIGYISKIKKVCECVCMHCGKLLLDEHSELMR 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+KI+ PK R + CK K CE + + D + + GCG QP++
Sbjct: 124 QAIKIKDPKRRFNAVWSLCKAKMVCE--------TEVPSDNDPAQYVSRGGCGNTQPSVR 175
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPE 207
DG++++ +K + K D PE
Sbjct: 176 KDGLSLVGTWK--KDKGADDADQPE 198
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI+++SV +++ +T +R P G +D RLGT+D+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRLSVVHVEYPETMDEQRMRPRTKGPNDPRLGTLDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ ++ VC NC KI AD D KF+
Sbjct: 66 QYYCETCEEGQKECPGHFGHIELATPVFHIGFLTKTKKLLETVCHNCGKIKADMSDPKFQ 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+IR PK R + I K CE + +G +P K GCG QPT+
Sbjct: 126 DALRIRDPKRRFDIIWRLSKDVAICEADPLPEDEDPFSKEGSKP-HKGHGGCGNAQPTIR 184
Query: 183 IDGMNMIAEYKAQRKK-NDDQGQLPEPVERKQT 214
+G++++ +K + +D +P+P +R T
Sbjct: 185 KEGLSLVGTWKPNKANMMEDDIDIPQPEKRTIT 217
>gi|307106775|gb|EFN55020.1| hypothetical protein CHLNCDRAFT_134851 [Chlorella variabilis]
Length = 510
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 128/217 (58%), Gaps = 28/217 (12%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
FT+SP KV+ +QF +L + +R+ SV +I+ +T E+G P GGLSD RLGT+D+
Sbjct: 4 FTYSPAPHRKVKALQFGVLDAEFLRRYSVAKIETSQTYEKGRPKLGGLSDPRLGTMDRAL 63
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC T + + +CPG+FGH+ELAKPMFHI F+KT++ ++RCV ++ SKI+ ED K+ A
Sbjct: 64 KCTTDGNGVLDCPGYFGHIELAKPMFHIHFLKTVVKVLRCVSYHNSKIMVLPEDPKYAQA 123
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+K+R+P+ RL C+T+ CE G QPT ++
Sbjct: 124 MKVRNPERRLRVWTSLCQTRRVCE------------------------HTGGPQPTYRLE 159
Query: 185 --GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
M ++AE+ + +++D G E +ERKQ +T E+
Sbjct: 160 HGTMRIMAEFPQPKGEDEDMGV--EAMERKQEITPEK 194
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/182 (41%), Positives = 115/182 (63%), Gaps = 6/182 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + +++ +QF +LSP+EI+ MSV I + +T + R P GGL+D LG++D+
Sbjct: 6 FAHSSAPIREIKEIQFGLLSPEEIKGMSVCHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ NM ECPGHFGH+ELA+P+FH GF++ ++ VC NCSK+LAD D ++
Sbjct: 66 QFKCKTCTENMTECPGHFGHIELARPVFHPGFIRRTKKLLEMVCHNCSKVLADRSDPQYA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGG---DEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
A++IR PK R +++ CK+K +C+ D L G+ P+ GCG +QP
Sbjct: 126 AAMRIRDPKVRFKRVWDICKSKRRCDNDPPKQAEDGEYNLNGTGDRPVEGH-GGCGNIQP 184
Query: 180 TL 181
+
Sbjct: 185 VI 186
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/192 (39%), Positives = 114/192 (59%), Gaps = 14/192 (7%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
FSP ++ ++R ++F +L P+ +++MSV EI + G+P GGL+DLR+GT D R C
Sbjct: 11 FSPCELKRIRAIEFGLLDPELVKRMSVCEITLTELYREGIPQTGGLNDLRMGTTDPRHIC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TCS ++ CPGHFGH+ LAKPM+H GFM T+L I+RCVCFNCSK+L ++ D + +L LK
Sbjct: 71 LTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKLLLNKNDPRVQLILK 130
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
RL + C C ID + + GCG QP+ T +G
Sbjct: 131 SPSSSFRLNHLSELCSASRTC----RIDTQT----------NTKIEGCGYPQPSYTKEGP 176
Query: 187 NMIAEYKAQRKK 198
N++ ++ ++++
Sbjct: 177 NLMIQFSQKQRE 188
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 3/205 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P++HIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL++R PK R + I K CE D + +P+R GCG QP +
Sbjct: 126 EALRMRDPKRRFDHIWRLSKDVLICEADPPPDDDEPFSKENAKPVRMH-GGCGNAQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPE 207
+G+ ++ +K + ++ Q PE
Sbjct: 185 KEGITLVGTWKPNKMMDEMDMQQPE 209
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 3/205 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P++HIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL++R PK R + I K CE D + +P+R GCG QP +
Sbjct: 126 EALRMRDPKRRFDHIWRLSKDVLICEADPPPDDDEPFSKENAKPVRMH-GGCGNAQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPE 207
+G+ ++ +K + ++ Q PE
Sbjct: 185 KEGITLVGTWKPNKMMDEMDMQQPE 209
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF +++P+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMAPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 AAISTRDAKLRFNRVWAVCKKKQRCENEDRTEKNDEEFAPGMKPMLNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 116/195 (59%), Gaps = 4/195 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ +M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDSEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 TAINTRDAKLRFNRVWAVCKKKRRCENEDRNEKNDDEFAPGMKPVAHNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEYKAQRK 197
+ + A + ++
Sbjct: 186 QAALQLKAAFDVAQE 200
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 30/204 (14%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S + V +QF ++SP+EI+ MSV I + +T E + P GGL+D LG+ID+
Sbjct: 6 FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMEENKTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+F+C+TC+ MGECPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 QFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTRDPEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---------- 172
A+ R PK R ++ CK K +C D EEP +K +
Sbjct: 126 AAIATRDPKVRFSRVWEVCKKKRRC--------------DNEEPKQKDEEFAPGMKLGPV 171
Query: 173 ----GCGALQPTLTIDGMNMIAEY 192
GCG +QP + + + A +
Sbjct: 172 EGHGGCGNVQPNVRQAALQLKAAF 195
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 4/195 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIGTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFTPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEYKAQRK 197
+ + A + ++
Sbjct: 186 QTALQLKAAFDVAQE 200
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 4/195 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAINTRDAKLRFNRVWTVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEYKAQRK 197
+ + A + ++
Sbjct: 186 QAALQLKAAFDVAQE 200
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + +P+R GCG +QP +
Sbjct: 126 EALRFRDPKRRFDAIWRLSKDVLICEADPTPDDDDPFSKEASKPVRSH-GGCGNMQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQT 214
+G++++ +K + ++ D + +P +R+ T
Sbjct: 185 KEGISLVGTWKPNKNRDMMDDMDIQQPEKRQIT 217
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 116/195 (59%), Gaps = 4/195 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ +M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 TAINTRDAKLRFNRVWAVCKKKRRCENEDRNEKNDDEFAPGMKPVAHNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEYKAQRK 197
+ + A + ++
Sbjct: 186 QAALQLKAAFDVAQE 200
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 19/221 (8%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + ++ +QF +LSPDEI+ MSV I + +T + R P GGL+D LG++D+
Sbjct: 6 FAHSSAPLRTIQEIQFGLLSPDEIKAMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ NM ECPGHFGH+ELA+P++H GF+K ++ VC NCSK+LAD D +
Sbjct: 66 QFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSKVLADRSDPAYA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEE-----PLRKRKSGCGAL 177
A+KIR PK+R +++ CK K C+ ++ DG P GCG
Sbjct: 126 AAMKIRDPKTRFKRVWDICKAKRVCD-----NLAPQKPEDGSYDPNAGPADGGHGGCGNT 180
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
QP + + + A + + DD+G + K+ LT E
Sbjct: 181 QPVVRQQALTLYAMVEHK----DDEGV---KTKEKKVLTPE 214
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIHTRDAKLRFNRVWAVCKKKRRCENEDHTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIHTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 128/216 (59%), Gaps = 16/216 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDK 62
F +S + ++ VQF + SP+E+R +SV +I+ +T + A GGL+D RLG+ID+
Sbjct: 4 FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+KC+TC M +CPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE ++ +
Sbjct: 64 NYKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+KI+ PK R + CK+K C+ + + + + + GCG QP++
Sbjct: 124 QAIKIKDPKRRFNAVWSLCKSKMVCD--------TEVPSEDDPSKYISRGGCGNAQPSIR 175
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
DG++++ +K + KN + PE K+ L+AE
Sbjct: 176 KDGLSLVGTWK--KDKNSEDSDQPE----KRILSAE 205
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 9/181 (4%)
Query: 20 FSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECP 77
F LSP ++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ NM ECP
Sbjct: 1 FGCLSPQ--KRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECP 58
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLE 135
GHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K + +K + PK RL
Sbjct: 59 GHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLT 118
Query: 136 QILCACKTKNKCEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMNMIAEY 192
+ CK KN CEGG+E+D + +G+E ++K K GCG QP + G+ + AE+
Sbjct: 119 HVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHGGCGRYQPRIRRTGLELYAEW 178
Query: 193 K 193
K
Sbjct: 179 K 179
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 23/220 (10%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + V +QF +LSP+EI+ MSV I + +T E + P GGL+D LG+ID+
Sbjct: 6 FPHSSAPLKTVEEIQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ M ECPGHFGH+ELAKP++H GF+K + ++ VC NCSK+LADE D +F
Sbjct: 66 QFKCKTCAQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEE-------PLRKRKSGCG 175
A++ R K R ++I CK K KCE + D + EE + + GCG
Sbjct: 126 AAVRTRDSKVRFKRIWAVCKKKRKCENEERQD-----KNKDEEFAPGVKNTVLEGHGGCG 180
Query: 176 ALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTL 215
+QP + + + A ++ N ++G +RK+T+
Sbjct: 181 NMQPQVRQAALQLKAAFEV----NSEEGP-----KRKETV 211
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G +PL GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPLVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G +PL GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPLVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 127/216 (58%), Gaps = 16/216 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDK 62
F +S + ++ VQF + SP+E+R +SV +I+ +T + A GGL+D RLG+ID+
Sbjct: 4 FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M +CPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE ++ +
Sbjct: 64 NFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+KI+ PK R + CK K C+ + + + + + GCG QP++
Sbjct: 124 QAIKIKDPKRRFNAVWSLCKAKMVCD--------TEVPSEDDPSKYISRGGCGNAQPSIR 175
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
DG++++ +K + KN + PE K+ ++AE
Sbjct: 176 KDGLSLVGTWK--KDKNAEDADQPE----KRIISAE 205
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 127/216 (58%), Gaps = 16/216 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDK 62
F +S + ++ VQF + SP+E+R +SV +I+ +T + A GGL+D RLG+ID+
Sbjct: 4 FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M +CPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE ++ +
Sbjct: 64 NFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+KI+ PK R + CK K C+ + + + + + GCG QP++
Sbjct: 124 QAIKIKDPKRRFNAVWSLCKAKMVCD--------TEVPSEDDPSKYISRGGCGNAQPSIR 175
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
DG++++ +K + KN + PE K+ ++AE
Sbjct: 176 KDGLSLVGTWK--KDKNAEDADQPE----KRIISAE 205
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 34/247 (13%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGK----------TTERGMPMAG 50
M+N FT+S + +VR +QF ILSP+E R +SV +ID + ++ G P AG
Sbjct: 1 MQNAFTYSQAPIRRVRQIQFGILSPEETRALSVAKIDSPEIYQDVGLGAGSSVGGRPKAG 60
Query: 51 GLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCS 110
GL+D R+GTID+ FKC+TC M ECPGHFGH+EL +P++H+GFM + I+ CVC C
Sbjct: 61 GLADPRMGTIDRNFKCQTCGEGMAECPGHFGHIELGRPVYHVGFMTKVKKILECVCVQCG 120
Query: 111 KILADEEDDKFKLALKIRH---PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD----- 162
+ +D + LA +RH PK RL+ + K +C D D+ + D
Sbjct: 121 TLKSDLSE--LPLADAVRHTQNPKRRLKLVHEVAAKKRQCS-RDAPDIQIIKDDDLTGLE 177
Query: 163 ----------GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERK 212
+E R GCG++QP + +G+ + Y + +DD G+ + + K
Sbjct: 178 RRDEGRASRLAQEYYAGRHGGCGSIQPVIRKEGLKLFLVYD-KSTTDDDGGK--DKSQEK 234
Query: 213 QTLTAER 219
L+A R
Sbjct: 235 VPLSARR 241
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 12/203 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRSISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FHIGF+ + + C+C +C K+L DE +++ +
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHIGFISKIKKVCECICMHCGKLLLDENNEQMRQV 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+ I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 MSIKDSKKRFNAIWTLCKTKTVC----ETDVPS---EDDPTQLISR-GGCGNAQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ ++ +K + ND G PE
Sbjct: 178 GLKLVGSWKKDKATND--GDEPE 198
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + +P+R GCG +QP +
Sbjct: 126 EALRFRDPKRRFDAIWRLSKDVLICEADPTPDDDDPFSKEASKPVRSH-GGCGNMQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQT 214
+G++++ +K + ++ D + +P +R+ T
Sbjct: 185 KEGISLVGTWKPNKNRDMMDDMDIQQPEKRQIT 217
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 13/215 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKR 63
F S + +++ VQF ILSPDEI+ SV +I+ + E+ GGL+D R+GTID+
Sbjct: 6 FAQSVAPIRQIKEVQFGILSPDEIKAYSVAKIEFPEVMDEQQKQKEGGLADPRMGTIDRN 65
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD---K 120
FKC TC M ECPGHFGH+ELA+P+FHIGF+ + I+ +C NC K+ D D
Sbjct: 66 FKCATCGEGMAECPGHFGHIELARPVFHIGFLGKVKKILESICVNCGKLKVDPYTDPQLA 125
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK--SGCGALQ 178
KL L +PK+R+ + CK K CE DE+ +G P+ +K GCG Q
Sbjct: 126 SKLKLTRNNPKARMAVVWSVCKGKMTCE-PDEVKEDE---QEGGPPVEVKKGHGGCGHHQ 181
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQ 213
P + +G+ + YK K+NDD+ P E++Q
Sbjct: 182 PQIRKEGLKLFFNYK---KQNDDEESRPTVQEKRQ 213
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 5/206 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + + +QF + SP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAPLRTIAEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+IR PK R + I K CE D G + +P+R GCG QPT+
Sbjct: 126 DALRIRDPKRRFDHIWRLSKDILICE-ADPPPEDDEYGKESSKPVRLH-GGCGNAQPTVR 183
Query: 183 IDGMNMIAEYKAQRKKNDDQG-QLPE 207
+G+ ++ +K + D+ Q PE
Sbjct: 184 KEGITLVGTWKPSKSMMDEMDMQQPE 209
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 12/203 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + ++ VQF + SP+EIR +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTIKEVQFGLFSPEEIRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FHIGF+ + + C+C +C K+L DE +++ +
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHIGFISKIKKVCECICMHCGKLLLDEHNEQMRQI 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
LKI+ K R I CKTK C + DV S HD + + + GCG QPT+ D
Sbjct: 126 LKIKDSKKRFNAIWSLCKTKMIC----DTDVPS--EHDPTQLV--SRGGCGNAQPTVRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ ++ +K ++KN G PE
Sbjct: 178 GLKLVGSWK--KEKNTSDGDEPE 198
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 7/170 (4%)
Query: 31 MSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKP 88
MSVTE I + +TTE G P GGL D R G I++ +C+TC+ NM ECPGHFGH+ELAKP
Sbjct: 1 MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60
Query: 89 MFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHPKSRLEQILCACKTKNK 146
+FH+GF+ + ++RCVCF CSK+L D + K K LA PK RL + CK KN
Sbjct: 61 VFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNI 120
Query: 147 CEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMNMIAEYK 193
CEGG+E+D + +G+E L K K GCG QP + G+ + AE+K
Sbjct: 121 CEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWK 170
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D G + +P+ GCG +QP +
Sbjct: 126 EALRFRDPKRRFDAIWRLSKDVLICEADPSPDDDDPFGKEPSKPVHSH-GGCGNIQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQT 214
+G++++ +K + ++ D + +P +R+ T
Sbjct: 185 KEGISLVGTWKPSKNRDMMDDMDVQQPEKRQIT 217
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + +P+R GCG +QP +
Sbjct: 126 EALRFRDPKRRFDAIWRLSKDVLICEADPSPDDDEPFAKEPSKPVRSH-GGCGNIQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQT 214
+G++++ +K + ++ D + +P +R+ T
Sbjct: 185 KEGISLVGTWKPSKNRDMMDDMDVQQPEKRQIT 217
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 75/213 (35%), Positives = 125/213 (58%), Gaps = 4/213 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + +P+R GCG +QP +
Sbjct: 126 EALRFRDPKRRFDAIWRLSKDVLICEADPSPDDDEPFAKEPSKPVRSH-GGCGNIQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQT 214
+G++++ +K + ++ D + +P +R+ T
Sbjct: 185 KEGISLVGTWKPSKNRDMMDDMDVQQPEKRQIT 217
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats.
Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G +P+ GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 5/205 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT--TERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + +P+EI++MSV I++ +T +R P G++D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFAPEEIKRMSVVHIEYPETLDDQRQRPRTKGINDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QYNCETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKANTADSKFT 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE +D D ++ + GCG QPT+
Sbjct: 126 EALRFRDPKRRFDSIWRLSKDVLICEADAPVDD-EEFSKDSQKG--RSHGGCGNAQPTVR 182
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPE 207
+G+ ++ +K + +D+ PE
Sbjct: 183 KEGICLVGTWKPSKAMMEDEMAQPE 207
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 18/195 (9%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+V+ +QF +LSP+EI+ SV +D +T E G P GGL D R+GT+D+ KC TC +M
Sbjct: 10 RVKQLQFGLLSPEEIKAWSVCRVDFPETYENGRPKLGGLLDPRMGTVDRNLKCLTCQESM 69
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
+C GHFGH+EL + +FHIGFM + I+ CVC +C+K+ D ++ +F I+ P R
Sbjct: 70 NDCVGHFGHVELQRAVFHIGFMARIKKILECVCHSCAKLKVDTDNPRFLQTQFIKDPSKR 129
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPL-----------RKRKSGCGALQPTLT 182
L + CK K CEG S++ G++ +++SGCGA+QP+
Sbjct: 130 LRAVWELCKGKQMCEG-------SVIEASGQKAATADDSQNVSSSSQKRSGCGAVQPSYK 182
Query: 183 IDGMNMIAEYKAQRK 197
+G+ +A +K Q++
Sbjct: 183 KEGLKFVATFKQQQQ 197
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 124/212 (58%), Gaps = 16/212 (7%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FHIGF+ + + CVC +C K+L D+ +++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCECVCMHCGKLLLDDHNEQMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR-KRKSGCGALQPTLTI 183
KI+ K R I CKTK CE DV S E+P + + GCG QPT+
Sbjct: 126 CKIKDSKKRFNAIWTLCKTKMICES----DVPS-----EEDPTKLISRGGCGNAQPTVRK 176
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTL 215
DG+ ++ +K ++ D + EP +R T+
Sbjct: 177 DGLKLVGSWKKEKNTGDPE----EPEQRILTM 204
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 77/202 (38%), Positives = 120/202 (59%), Gaps = 16/202 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKSMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF++ + I+ VC NCSK+ D D +F
Sbjct: 66 GLKCKTCTQTMSDCPGHFGHIELAKPVYHPGFIRKVKKILEMVCHNCSKLRVDASDAEFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCE-------GGDEIDVLSLLGHDGEEPLRKRKSGCG 175
A+ IR K+R ++ CKTK KCE D+ D L + ++P+ GCG
Sbjct: 126 SAINIRDAKARFNRVWALCKTKTKCENEDRSDKNDDDFDFLPV-----KKPVITNHGGCG 180
Query: 176 ALQPTLTIDGMNMIAEYKAQRK 197
+QP + + + A ++ +++
Sbjct: 181 NVQPQVRQAALQLKAVFELEQE 202
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/205 (37%), Positives = 114/205 (55%), Gaps = 5/205 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT--TERGMPMAGGLSDLRLGTIDK 62
F +S + ++ +QF + +P+EI++MSV I++ +T +R P G++D RLGTID+
Sbjct: 6 FPYSKAPLRTIKEIQFGLFAPEEIKRMSVVHIEYPETLDDQRQRPRTKGINDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ CETC ECPGHFGH+ELA P+FHIGF+ + ++ VC NC KI A+ D KF
Sbjct: 66 QYNCETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKANTADSKFT 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D E + GCG QPT+
Sbjct: 126 EALRFRDPKRRFDAIWRLSKDVLVCEADAPADDEEF---SKESQKGRSHGGCGNAQPTVR 182
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPE 207
+G+ ++ +K + +D+ PE
Sbjct: 183 KEGICLVGTWKPSKAMMEDEMAQPE 207
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 83/198 (41%), Positives = 115/198 (58%), Gaps = 10/198 (5%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGE 75
+QF +LSPDEI+KMSV +I + +T +R P GL+D +LGTID+ FKC TC + +
Sbjct: 1 IQFGLLSPDEIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGIMD 60
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGH+ELA P+FHIGF+ + ++ VC NC KI AD D K+ AL+ R PK R +
Sbjct: 61 CPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDPKYAEALRYRDPKRRFD 120
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEP--LRKRKSGCGALQPTLTIDGMNMIAEYK 193
I CK K CE I + G P + GCG QP + +G+ ++ +K
Sbjct: 121 AIWRLCKDKLLCETTPIIQEDAF----GNAPPQIVYGHGGCGNPQPQIRREGLTLVGTWK 176
Query: 194 AQRKKNDDQGQLPEPVER 211
+ K+ DQ PV+R
Sbjct: 177 PE--KSVDQSDSAPPVKR 192
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--------ERGMPMAGGLSDLR 56
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D R
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMVGAPANDEQRQRPREKGLNDPR 65
Query: 57 LGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
LGTID+ ++C TC + CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+
Sbjct: 66 LGTIDRNWRCATCEEGINGCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANT 125
Query: 117 EDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGA 176
D K+ AL+ R PK R + I K CE D + +P+R GCG
Sbjct: 126 NDQKYLEALRFRDPKRRFDAIWRLSKDVLICEADPTPDDDDPFSKEASKPVRSH-GGCGN 184
Query: 177 LQPTLTIDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQT 214
+QP + +G++++ +K + ++ D + +P +R+ T
Sbjct: 185 MQPQIRKEGISLVGTWKPNKNRDMMDDMDIQQPEKRQIT 223
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 12/203 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV ++ +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKVRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE +++ +
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFISKIKKVCESVCMHCGKLLLDEHNEQMRQV 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
LKI+ PK R + CKTK C E DV S + + + GCG QPT+ D
Sbjct: 126 LKIKDPKKRFNAVWSLCKTKMIC----ETDVPS----ENDPTQLISRGGCGNAQPTVRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ ++ +K + +D G+ PE
Sbjct: 178 GLKLVGSWKKDKATSD--GEEPE 198
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 78/218 (35%), Positives = 129/218 (59%), Gaps = 11/218 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + + +QFS++SP+EI+ +SV I + + + + P GG++D LG++D+
Sbjct: 6 FAHSSAPLKTIEEIQFSMMSPEEIKNLSVAHIVYPEAMDETKTKPRDGGVNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ NM ECPGHFGH+ELAKP++H GF+K ++ VC NCS +LAD D +F
Sbjct: 66 QFKCKTCTENMSECPGHFGHIELAKPVYHPGFIKKTKKVLEIVCHNCSMVLADRSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK--RKSGCGALQPT 180
A+ R PK+R +++ CK K +CE + + + + ++ GCG +QP
Sbjct: 126 AAVNTRDPKARFQRVWECCKKKRRCENEAKAEEEEFDPNPSKIAKQQPHNHGGCGNMQPA 185
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
+ G+ + + ++ +R D+ G+ E K+ LTAE
Sbjct: 186 VRQTGLQLWSHFEVER---DEGGKTKE----KKLLTAE 216
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium
hominis TU502]
gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Cryptosporidium hominis]
Length = 1895
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 119/213 (55%), Gaps = 24/213 (11%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
FS ++ +V ++F +LSP+ IRK SV EI E G P +GGL+D LGT D C
Sbjct: 11 FSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDIYENGRPKSGGLNDPLLGTTDYHILC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
ETC ++ CPGHF H+EL KPMFHIGF+ T+L ++RCVC+ CSK+ D D KFK +
Sbjct: 71 ETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDTLDPKFKQIKR 130
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
IR+P+ RL++I L + + SGCG +QPT + +G
Sbjct: 131 IRNPRLRLKKI------------------LEMRSSSSRCIISSDGSGCGFVQPTYSKEGY 172
Query: 187 NM-IAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
N+ I + + + + DD E V+ K+ L AE
Sbjct: 173 NLYINQNQDENRIIDD-----ESVDSKRLLAAE 200
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRHA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/190 (40%), Positives = 112/190 (58%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GFKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+ R K R ++ CK K +CE D + G + + GCG +QP +
Sbjct: 126 SAINTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDDDFAPGMKAVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 118/207 (57%), Gaps = 22/207 (10%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGE 75
+QF +LSPDEI+KMSV +I + +T +R P GL+D +LGTID+ FKC TC + +
Sbjct: 1 IQFGLLSPDEIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGIMD 60
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGH+ELA P+FHIGF+ + ++ VC NC KI AD D K+ AL+ R PK R +
Sbjct: 61 CPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDSKYAEALRYRDPKRRFD 120
Query: 136 QILCACKTKNKCEGGDEI--DVLS------LLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
I CK K CE I D S L GH GCG QP + +G+
Sbjct: 121 AIWRLCKDKLLCETTPIIQDDPFSNAPPQILYGH----------GGCGNPQPQIRREGLT 170
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQT 214
++ +K + K+ DQ + PV+R T
Sbjct: 171 LVGTWKPE--KSVDQSESAPPVKRVIT 195
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 120/207 (57%), Gaps = 14/207 (6%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+EIR +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEIRAISVAKIRLPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FHIGF+ + + +C +C K+L DE +++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCESLCMHCGKLLLDEHNEQMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
++I+ PK R + CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 IQIKDPKKRFNAVWSLCKTKMVC----ETDVPS---EDDPTKLISR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVER 211
G+ ++ + KK+ G EP +R
Sbjct: 178 GLKLVGSW----KKDKSTGDADEPEQR 200
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 113/185 (61%), Gaps = 7/185 (3%)
Query: 31 MSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKP 88
MSVTE I + +TTE G P GGL D R G I++ +C+TC+ NM ECPGHFGH+ELAKP
Sbjct: 1 MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60
Query: 89 MFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHPKSRLEQILCACKTKNK 146
+FH+GF+ + ++RCVCF CSK+L D + K K L PK RL + CK KN
Sbjct: 61 VFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILGKSKGQPKKRLTHVYDLCKGKNI 120
Query: 147 CEGGDEIDV-LSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMNMIAEYKAQRKKNDDQG 203
CEGG+E+D + +G+E L K K GCG QP + G+ + AE+K + + ++
Sbjct: 121 CEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKK 180
Query: 204 QLPEP 208
L P
Sbjct: 181 ILLSP 185
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 118/207 (57%), Gaps = 22/207 (10%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGE 75
+QF +LSPDEI+KMSV +I + +T +R P GL+D +LGTID+ FKC TC + +
Sbjct: 1 IQFGLLSPDEIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGIMD 60
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGH+ELA P+FHIGF+ + ++ VC NC KI AD D K+ AL+ R PK R +
Sbjct: 61 CPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDSKYAEALRYRDPKRRFD 120
Query: 136 QILCACKTKNKCEGGDEI--DVLS------LLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
I CK K CE I D S L GH GCG QP + +G+
Sbjct: 121 AIWRLCKDKLLCETTPIIQDDPFSNAPPQILYGH----------GGCGNPQPQIRREGLT 170
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQT 214
++ +K + K+ DQ + PV+R T
Sbjct: 171 LVGTWKPE--KSVDQSESAPPVKRVIT 195
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 18/206 (8%)
Query: 12 VAKVRMVQFSILSPDEI---------------RKMSVTEIDHGKTTERGMPMAGGLSDLR 56
V + VQF ILSPDEI + MSV +I+ E GM GGLSD R
Sbjct: 11 VRDIERVQFGILSPDEILGFLMLPSTIVQNKQKAMSVAKIEFPDAMENGMQKRGGLSDPR 70
Query: 57 LGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
+GT++++FKC+TC+ +MG+CPGHFGH+EL KP+F++ M + ++ VC++CS++L
Sbjct: 71 MGTVERQFKCQTCTGSMGDCPGHFGHIELVKPVFNVTMMTKIQKTLKSVCYHCSRLLVSP 130
Query: 117 EDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGA 176
ED +K A + + R ++ AC K +C GG ++D D K ++GCG
Sbjct: 131 EDMAYKHAQRTNNMSERFRRLSTACFGKTRCGGGTDVDADMKPSIDLTA---KARTGCGN 187
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQ 202
+QP DG+++ E++ K D +
Sbjct: 188 VQPKYKRDGLSLTYEFRLTGAKKDSE 213
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S + + + GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS----ENDPTQLVSRGGCGNTQPTVRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 121/208 (58%), Gaps = 16/208 (7%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+EI +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEICAISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRSL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE +++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEHNEQMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR-KRKSGCGALQPTLTI 183
+KI+ K R + CK K C + DV S E+P + + GCG QPT+
Sbjct: 126 IKIKDSKKRFNAVWSLCKAKMIC----DTDVPS-----DEDPTQLISRGGCGNAQPTIRR 176
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVER 211
DG+ ++ +K + D++ EP +R
Sbjct: 177 DGLKLVGSWKKDKNSGDNE----EPEQR 200
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
dendrobatidis JAM81]
Length = 1797
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 1/195 (0%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F S + KV+ VQF ILSP+E + MSV +I+H + + P GGL D RLGTID+ F
Sbjct: 10 FPASSAPLRKVKTVQFGILSPEETKAMSVAKIEHFELMDNDRPKLGGLLDPRLGTIDRNF 69
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC NM +CPGHFGH+ELAKP+FH GF+K + ++ CVC C K+ DE +++F L
Sbjct: 70 KCQTCGENMTDCPGHFGHIELAKPVFHQGFLKIIKKVLECVCHYCGKLKVDESNERFVLF 129
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+I+ + R ++ CKTK CEGG+E +G P +K GCG QP
Sbjct: 130 RRIKSRRRRFHEVWQLCKTKTVCEGGEEQSEGGQQKPNG-HPHKKPHGGCGQKQPVYRSA 188
Query: 185 GMNMIAEYKAQRKKN 199
+ ++A +KA + ++
Sbjct: 189 ILKIMANFKATKDED 203
>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
subunit, long PHYSPTS repeat at
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 1902
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 24/213 (11%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
FS ++ +V ++F +LSP+ IRK SV EI E G P +GGL+D LGT D C
Sbjct: 18 FSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDIYENGRPKSGGLNDPLLGTTDYHILC 77
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
ETC ++ CPGHF H+EL KPMFHIGF+ T+L ++RCVC+ CSK+ D D KFK +
Sbjct: 78 ETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDTLDPKFKQIKR 137
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
I++P+ RL++I L + + SGCG +QPT + +G
Sbjct: 138 IKNPRLRLKKI------------------LEMRSSSSRCIISSDGSGCGFVQPTYSKEGY 179
Query: 187 NM-IAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
N+ I + + + + DD E V+ K+ L AE
Sbjct: 180 NLYINQNQDENRIIDD-----ESVDSKRLLAAE 207
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS
8797]
Length = 1721
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 118/203 (58%), Gaps = 13/203 (6%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE +++ +
Sbjct: 66 KCQTCQEGMSECPGHFGHIDLAKPVFHVGFITKIKKVCECVCMHCGKLLLDENNEQMRQV 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+ I+ PK R CKTK C E DV S + + + GCG QPT+ D
Sbjct: 126 MAIKDPKKRFNATWALCKTKMVC----ETDVPS----ENDPTKLVSRGGCGNTQPTVRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ ++ +K +K +G+ PE
Sbjct: 178 GLKLVGSWK---RKKTIEGEEPE 197
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 77/212 (36%), Positives = 123/212 (58%), Gaps = 5/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F FS + ++ +QF +LSP+EI++MSV +++ +T + R P GL+D RLGTID+
Sbjct: 6 FPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D G + + + K GCG QP +
Sbjct: 126 DALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSK-IVKGHGGCGNAQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G++++ +K + ++ D + +P E+KQ
Sbjct: 185 KEGISLVGTWKPNKMRDMMDDTDIQQP-EKKQ 215
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 75/190 (39%), Positives = 112/190 (58%), Gaps = 4/190 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F+ +P K V +QF ++SP+EI+ MSV I + +T + R P GGL+D LG+ID+
Sbjct: 8 FSSAPLKT--VEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
KC+TC+ M +CPGHFGH+ELAKP++H GF+K + I+ VC NCSK+LAD D +F
Sbjct: 66 GLKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFV 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A++ R K R ++ CK K +CE D + G + + GCG +QP +
Sbjct: 126 SAIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKSVVNNHGGCGNVQPQVR 185
Query: 183 IDGMNMIAEY 192
+ + A +
Sbjct: 186 QAALQLKAAF 195
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats.
Identities = 77/212 (36%), Positives = 123/212 (58%), Gaps = 5/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F FS + ++ +QF +LSP+EI++MSV +++ +T + R P GL+D RLGTID+
Sbjct: 6 FPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D G + + + K GCG QP +
Sbjct: 126 DALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSK-IVKGHGGCGNAQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G++++ +K + ++ D + +P E+KQ
Sbjct: 185 KEGISLVGTWKPNKMRDMMDDTDIQQP-EKKQ 215
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides
immitis RS]
Length = 1750
Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 77/212 (36%), Positives = 123/212 (58%), Gaps = 5/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F FS + ++ +QF +LSP+EI++MSV +++ +T + R P GL+D RLGTID+
Sbjct: 6 FPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D G + + + K GCG QP +
Sbjct: 126 DALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSK-IVKGHGGCGNAQPQIR 184
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G++++ +K + ++ D + +P E+KQ
Sbjct: 185 KEGISLVGTWKPNKMRDMMDDTDIQQP-EKKQ 215
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats.
Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 14/219 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER--GMPMAGGLSDLRLGTIDK 62
F+ S V ++ VQF ++SP+E++ +SV +I H + + G P GGL D R+GTID+
Sbjct: 7 FSHSAAPVKGIKEVQFGLMSPEEMKSLSVAQIIHPEVIDESTGRPRQGGLMDPRMGTIDR 66
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF- 121
FKC+TC M ECPGHFGH+ELA+P FHIGF+ + I+ +C NC ++LADE D +
Sbjct: 67 NFKCQTCGEGMAECPGHFGHIELARPAFHIGFLTKIKKIIESICVNCGRLLADENDPELA 126
Query: 122 KLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEE--PLRKRKSGCGALQP 179
K+ + K R E + C + C+ DE + +GE+ P + GCG LQP
Sbjct: 127 KIVRTVPVGKRRFEAVHAYCTKISICK-PDEPN------ENGEDAPPSQPGHGGCGRLQP 179
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
+ + + + + K Q+ +D + + +++Q AE
Sbjct: 180 AIRREALKLFSVNKQQKHDEEDDTKAQQ--DKRQLSAAE 216
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats.
Identities = 76/200 (38%), Positives = 112/200 (56%), Gaps = 14/200 (7%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
FSP + K+R ++F IL P+ I++MSV EI + G+P GGL+DLR+GT D R C
Sbjct: 11 FSPCDLKKIRSIEFGILDPEIIKRMSVCEITLTELYREGVPQTGGLNDLRMGTTDPRHVC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC ++ CPGHFGH+ LAKPM+H GFM T++ I+ VCFNCSK+ D+ED K + LK
Sbjct: 71 TTCRMDLKYCPGHFGHIVLAKPMYHYGFMPTIIKILSSVCFNCSKLRLDKEDPKMRNILK 130
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
I RL I K C+ + + GCG QP T +G
Sbjct: 131 IPPGAMRLNYIATMSKPITNCQFKSQS--------------VSKVQGCGYPQPIFTKEGP 176
Query: 187 NMIAEYKAQRKKNDDQGQLP 206
N++ ++ ++++ ++ + P
Sbjct: 177 NLMIKFTQKQREVLEEAEEP 196
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 118/203 (58%), Gaps = 12/203 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRGISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE +++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCESVCMHCGKLLLDEHNEQMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+ I+ K R + CKTK C E DV S D + + GCG QP++ D
Sbjct: 126 MAIKDSKKRFNAVWTLCKTKMIC----ETDVPS----DDDPTTLISRGGCGNAQPSIRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ ++ +K ++KN G PE
Sbjct: 178 GLKLVGSWK--KEKNTSDGDEPE 198
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 7/201 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKR 63
F S + VR VQF ILSP+EIR +SV +++ + E G P GGLSD RLGT+D+
Sbjct: 9 FAHSTAPIRPVREVQFGILSPEEIRAISVCKVEIPEIKDEAGKPRIGGLSDPRLGTLDRN 68
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FK 122
+KC+TC ECPGHFGH++LAKP+FHIG++ + I+ CVCF+C K+ AD D F
Sbjct: 69 YKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADTVTDPVFD 128
Query: 123 LALKIRH--PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
+K K R +++ C K CE D D +G D E + GCG +QP
Sbjct: 129 QIVKATRGSKKRRFQRVWEYCSKKMICEADDPKDE-DEMGFD--EQNKPGHGGCGRVQPN 185
Query: 181 LTIDGMNMIAEYKAQRKKNDD 201
+ +G+ + ++K + +++D
Sbjct: 186 IRREGLKLFTQWKKGKGEDED 206
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 125/220 (56%), Gaps = 23/220 (10%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEID---HGKTTERGMPMAGGLSDLRLGTIDKRF 64
+P K +V+ VQF ILS +EI++ SVT D + T E G P GGL D R G ID+
Sbjct: 9 APLK--RVKKVQFGILSAEEIKRRSVTVPDGIRYPYTMEGGKPKMGGLMDPRQGVIDRAS 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-L 123
+C+TC+ NM CPGHFGH+ L KP+FH+ FM ++ IMRCVCF CS++L D +D K K +
Sbjct: 67 RCQTCAGNMNTCPGHFGHISLTKPVFHVCFMTKIVKIMRCVCFYCSRLLIDSDDPKVKDI 126
Query: 124 ALKIRH-PKSRLEQILCACKTKNKCEGGD---EIDVLSLLGHDGEEPLRKRKSGCGALQP 179
LK R P RL+ I + K C+GG E +++ ++P + GCG QP
Sbjct: 127 LLKTRTVPHKRLQYIYTLARVKRICDGGGGGAEDKNTTMM----DDPKMMARGGCGRYQP 182
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
L G+ + AE+K + E ERK ++AER
Sbjct: 183 KLRKIGLEITAEWKEINE---------ESQERKIVVSAER 213
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
Length = 1748
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 20/219 (9%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-------GCG 175
AL+ R PK R + I K CE D ++P K S GCG
Sbjct: 126 DALRFRDPKKRFDAIWRLSKDILVCEADPPED---------DDPFAKESSKPVQGHGGCG 176
Query: 176 ALQPTLTIDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+QP + +G+ ++ +K + ++ D ++ +P E+KQ
Sbjct: 177 NVQPQVRKEGITLMGTWKPSKMRDMMDDNEIQQP-EKKQ 214
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + + +P++ GCG +QP +
Sbjct: 126 DALRFRDPKKRFDAIWRLSKDILICE-ADPPEEDDPFAKESSKPVQGH-GGCGNVQPQVR 183
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G+ ++ +K + ++ D ++ +P E+KQ
Sbjct: 184 KEGITLMGTWKPSKMRDMMDDNEIQQP-EKKQ 214
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + + +P++ GCG +QP +
Sbjct: 126 DALRFRDPKKRFDAIWRLSKDILICE-ADPPEEDDPFAKESSKPVQGH-GGCGNVQPQVR 183
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G+ ++ +K + ++ D ++ +P E+KQ
Sbjct: 184 KEGITLMGTWKPSKMRDMMDDNEIQQP-EKKQ 214
>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
Length = 1751
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 101/146 (69%), Gaps = 2/146 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + ++ +QF +LSP+EI+ MSV + + +T + R P GGL+D LG++D+
Sbjct: 6 FAHSSAPIRTIKEIQFGLLSPEEIKGMSVCHVLYPETMDETRTKPRDGGLNDPLLGSVDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ NM ECPGHFGH+ELA+P++H GF++ ++ VC NCS++LAD D ++
Sbjct: 66 QFKCKTCTENMSECPGHFGHIELARPVYHPGFIRRTKKLLEIVCHNCSRVLADRSDPQYA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCE 148
A++IR PK R +++ CK+K +C+
Sbjct: 126 AAMRIRDPKVRFKRVWDICKSKRRCD 151
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + + +P++ GCG +QP +
Sbjct: 126 DALRFRDPKKRFDAIWRLSKDILICE-ADPPEEDDPFAKESSKPVQGH-GGCGNVQPQVR 183
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G+ ++ +K + ++ D ++ +P E+KQ
Sbjct: 184 KEGITLMGTWKPSKMRDMMDDNEIQQP-EKKQ 214
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + + +P++ GCG +QP +
Sbjct: 126 DALRFRDPKKRFDAIWRLSKDILICE-ADPPEEDDPFAKESSKPVQGH-GGCGNVQPQVR 183
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G+ ++ +K + ++ D ++ +P E+KQ
Sbjct: 184 KEGITLMGTWKPSKMRDMMDDNEIQQP-EKKQ 214
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1712
Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
AL+ R PK R + I K CE D + + +P++ GCG +QP +
Sbjct: 126 DALRFRDPKKRFDAIWRLSKDILICE-ADPPEEDDPFAKESSKPVQGH-GGCGNVQPQVR 183
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G+ ++ +K + ++ D ++ +P E+KQ
Sbjct: 184 KEGITLMGTWKPSKMRDMMDDNEIQQP-EKKQ 214
>gi|133325|sp|P28364.1|RPB1_EUPOC RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|2673850|emb|CAA47068.1| DNA-directed RNA polymerase II largest subunit [Euplotes
octocarinatus]
Length = 478
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 107/169 (63%), Gaps = 1/169 (0%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
+T S KVR +QF +L P EI+ MSV ++++ K + G+P GG++DLR+GT++K
Sbjct: 7 YTESTMDFQKVRKIQFGLLDPKEIQAMSVVQVENEKIYDNGIPTDGGINDLRMGTMEKAM 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
+C TC + ECPGHFGH+ELA+P+FHIGF+ + I++CVCFNC+K+L ++ DK+
Sbjct: 67 RCSTCQGDSKECPGHFGHIELAQPVFHIGFIDLVKKILKCVCFNCNKLLITDKHDKYSAL 126
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSG 173
+++ PK +L ++ CK C D G ++P R RK+G
Sbjct: 127 KRVKDPKLKLNKVYKVCKDIKVCGKADRKSETYTEGSGQKQP-RLRKTG 174
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats.
Identities = 80/212 (37%), Positives = 119/212 (56%), Gaps = 9/212 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F S + V+ +QF + SPDEI+ MSV I++ +T +R P GL+D +LGTID+
Sbjct: 4 FPHSSAPLKTVQEIQFGLFSPDEIKSMSVCHIEYAETMDEQRHRPREKGLNDPKLGTIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
C TC + ECPGHFGH+ELA P+FH+GF+ + I+ VC NC K+L DE + FK
Sbjct: 64 SQMCATCGESQQECPGHFGHIELAVPVFHVGFITKIKKILESVCHNCGKLLEDESNPLFK 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCE-GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
A+ +R PK R E + CK K C+ D G + ++ R GCG +QPT+
Sbjct: 124 RAVGLRDPKRRFEAVTRLCKPKMTCDLDAKNDDEQEDFGSNPKKEKRPGHGGCGNIQPTI 183
Query: 182 TIDGMNMIAEYKAQRKKN-DDQGQLPEPVERK 212
+ + + +K + ++ +D G VE+K
Sbjct: 184 RKEQLKLNGTWKLGKNEDGEDNG-----VEKK 210
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 12/203 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+ H+GF+ + + VC +C K+L DE +++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVLHVGFIAKIKKVCESVCMHCGKLLLDEHNEQMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+ I+ K R + CKTK C + DV S D + + GCG QPT+ D
Sbjct: 126 IAIKDSKKRFNAVWNLCKTKMIC----DTDVPS----DDDPTQLISRGGCGNAQPTVRKD 177
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ ++ +K ++ ND G PE
Sbjct: 178 GLKLVGSWKKEKNTND--GDEPE 198
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 7/201 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKR 63
F S + VR VQF ILSP+EIR +SV +++ + E G P GGLSD RLGT+D+
Sbjct: 9 FAHSTAPIRPVREVQFGILSPEEIRAISVCKVEVPEIKDEAGKPRIGGLSDPRLGTLDRN 68
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FK 122
+KC+TC ECPGHFGH++LAKP+FHIG++ + I+ CVCF+C K+ AD D F
Sbjct: 69 YKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADVVTDPVFD 128
Query: 123 LALKIRH--PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
+K K R +++ C K CE DE +G EE + GCG +QP
Sbjct: 129 QIVKATRGSRKRRFQRVWEYCSKKMVCE-ADEPKEDDEMGF--EEQAKPGHGGCGRIQPN 185
Query: 181 LTIDGMNMIAEYKAQRKKNDD 201
+ +G+ + ++K + +++D
Sbjct: 186 IRREGLKLFTQWKKGKGEDED 206
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 107/186 (57%), Gaps = 19/186 (10%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ +V+ +Q ILSP EIRKMSVTE I + + E G P GGL D R G I + C+TC
Sbjct: 15 IRQVKRIQLGILSPKEIRKMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGAIHQSASCQTC 74
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR- 128
NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K L I
Sbjct: 75 DRNMNECPGHFGHIDLAKPIFHIGFLMKTIKILRCVCFYCSKLLVSPSNPKIKKILVISK 134
Query: 129 -HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
P++R+ + CK N C EID+ GH GCG QP + G+
Sbjct: 135 GQPRTRMALVHDLCKGINIC----EIDI-ETTGH----------VGCGRYQPKIRRQGLE 179
Query: 188 MIAEYK 193
+I E+K
Sbjct: 180 LIGEWK 185
>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
Length = 1757
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 76/201 (37%), Positives = 116/201 (57%), Gaps = 11/201 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + + +QF +L+P+EI+ MSV + + T + R P GGL+D LGT D+
Sbjct: 6 FAPSSAPLKTIEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKF 121
++KC+TC+++M CPGHFGH+ELAKP++H GF+ I+ VC CSK+L DE D++F
Sbjct: 66 QYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENNDEQF 125
Query: 122 KLALKIRHPKSRLEQILCACKTKNKCE----GGDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
AL++R PK+R + ACK K CE G DE D + + P GCG+
Sbjct: 126 AQALRLRDPKARFAMVWKACKGKKVCEIETGGKDEKDSIDTATGIEKVP----HGGCGST 181
Query: 178 QPTLTIDGMNMIAEYKAQRKK 198
P + + + A+ + R++
Sbjct: 182 HPDIRKKALQLYAKVEEAREE 202
>gi|384491453|gb|EIE82649.1| RNA polymerase I [Rhizopus delemar RA 99-880]
Length = 651
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 112/191 (58%), Gaps = 9/191 (4%)
Query: 31 MSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKP 88
MSV++I+ + E G P GGL D R+GTID+ +KC+TC M ECPGHFGH++LAKP
Sbjct: 1 MSVSKIEFPELYEEGTQKPRVGGLLDPRMGTIDRNYKCQTCGEGMAECPGHFGHIDLAKP 60
Query: 89 MFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCE 148
+FHIGF+ + I+ CVCF+CSK+ D+ + +F+ A +I K RL + KTK CE
Sbjct: 61 VFHIGFLTKIKKILECVCFHCSKLKVDQSNPRFERARRISDRKVRLRAVWDIAKTKMTCE 120
Query: 149 GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEP 208
GGDE D L + GCG QP + DG+ + A++++ DD G
Sbjct: 121 GGDEEDGLEEKEEFNSGKRKSNHGGCGYKQPLIRKDGLKLYAQFRSS--PGDDSGN---- 174
Query: 209 VERKQTLTAER 219
E KQ LTA +
Sbjct: 175 -EGKQQLTAAK 184
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQ ILSPDEIRK SVT I + + E G P GG+ D R G ++ +C+TC N
Sbjct: 15 VKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQGVTNRSARCQTCDGN 74
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF + + I+RCVC+ CSK+L + K + + LK P
Sbjct: 75 MNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYCSKLLVSPNNPKLQEIFLKSEDQP 134
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR---KSGCGALQPTLTIDGMN 187
R+ + CK KN CEGGD+I G D EP+ + GCG QP+++ +
Sbjct: 135 GKRMALVHELCKGKNICEGGDQI------GED--EPITEDMVGHGGCGRSQPSISNRQLE 186
Query: 188 MIAEYK 193
+IA++K
Sbjct: 187 IIAKWK 192
>gi|321468698|gb|EFX79682.1| hypothetical protein DAPPUDRAFT_52186 [Daphnia pulex]
Length = 1047
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 113/186 (60%), Gaps = 15/186 (8%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQ ILSPDEIRK SVT I + + E G P GG+ D R G ++ +C+TC N
Sbjct: 15 VKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQGVTNRSARCQTCDGN 74
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HP 130
M ECPGHFGH++LAKP+FH+GF + + I+RCVC+ CSK+L + K + + LK P
Sbjct: 75 MNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYCSKLLVSPNNPKLQEIFLKSEDQP 134
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR---KSGCGALQPTLTIDGMN 187
R+ + CK KN CEGGD+I G D EP+ + GCG QP+++ +
Sbjct: 135 GKRMALVHELCKGKNICEGGDQI------GED--EPITEDMVGHGGCGRSQPSISNRQLE 186
Query: 188 MIAEYK 193
+IA++K
Sbjct: 187 IIAKWK 192
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 79/215 (36%), Positives = 120/215 (55%), Gaps = 27/215 (12%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F FS V +V+ +QFS+ P EI+ SV EI +T E+G P GGLSD R+GT+D+
Sbjct: 7 FPFSSAPVRQVKAIQFSVWDPAEIKAYSVAEIVTSETYEKGKPKLGGLSDPRMGTMDRGG 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
C T +N + PG+FGH+ LA+P++HIGF+KT++ ++RCV ++ S++L D++D K+
Sbjct: 67 ICTTDGANANDSPGYFGHIALARPVYHIGFIKTVVRVLRCVSYHTSRLLVDKDDPKYAYG 126
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L+I + RL + C+ K K G QP+ +D
Sbjct: 127 LRISDSEKRLRYFVHLCQGK------------------------KMDEATGNPQPSYRLD 162
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+ ++AE+ K D+ Q + VERKQ LTA R
Sbjct: 163 GLKIMAEFP---KLKGDEEQEQDNVERKQELTAAR 194
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats.
Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 15/222 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGT 59
M F +S V +++ +QF ++SP+EI I+H + E G GGL D ++GT
Sbjct: 1 MTVTFPYSSAPVKRIKEIQFGVMSPEEI-------IEHPEVMDENGKQKVGGLMDPKMGT 53
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
ID+ FKC+TCS M ECPGHFGH+ELA+P+FH GF+ + I+ CVC++C K+ D D
Sbjct: 54 IDRNFKCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDP 113
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGA 176
+ ++ P+ RL+ I K KN CE + + GE K K+ GCG
Sbjct: 114 MVQNIVRRIKPQHRLKAIWDLAKAKNVCEADSLEENDAEQDEYGENSGPKPKTGHGGCGH 173
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
QP +G+ +IA +K + D Q + EP ER+ AE
Sbjct: 174 HQPAYRKEGLKLIAVFKPSK---DKQEEGSEP-ERRNISAAE 211
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 15/222 (6%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGT 59
M F +S V +++ +QF ++SP+EI I+H + E G GGL D ++GT
Sbjct: 1 MTVTFPYSSAPVKRIKEIQFGVMSPEEI-------IEHPEVMDENGKQKVGGLMDPKMGT 53
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
ID+ FKC+TCS M ECPGHFGH+ELA+P+FH GF+ + I+ CVC++C K+ D D
Sbjct: 54 IDRNFKCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDP 113
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS---GCGA 176
+ ++ P+ RL+ I K KN CE + + GE K K+ GCG
Sbjct: 114 MVQNIVRRIKPQHRLKAIWDLAKAKNVCEADSLEENDAEQDEYGENSGPKPKTGHGGCGH 173
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
QP +G+ +IA +K + D Q + EP ER+ AE
Sbjct: 174 HQPAYRKEGLKLIAVFKPSK---DKQEEGSEP-ERRNISAAE 211
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 76/212 (35%), Positives = 123/212 (58%), Gaps = 6/212 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F FS + ++ +QF +LSP+EI++MSV +++ +T + R P GL+D RLGTID+
Sbjct: 6 FPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDDARQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++C TC + +CPGHFGH+EL+ P+FHIGF+ + ++ VC NC KI A+ D K+
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQKYL 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
L+ R PK R + I K CE D + G + + + K GCG QP +
Sbjct: 126 DGLRFRDPKRRFDAIWRLSKDVLICE-ADPPEEDEPFGKESAK-MPKGHGGCGNAQPQIR 183
Query: 183 IDGMNMIAEYKAQRKKN-DDQGQLPEPVERKQ 213
+G++++ +K + ++ D + +P E+KQ
Sbjct: 184 KEGISLVGTWKPNKMRDIMDDTDIQQP-EKKQ 214
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 42/247 (17%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPM--AGGLSDLRLGTIDK 62
F S + KV+ VQF ILSP+EI+ SV +I+H + + GGL+D R+GT D+
Sbjct: 6 FAHSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVIDEATHKLKVGGLNDPRMGTTDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED---- 118
FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD
Sbjct: 66 NFKCQTCGEGMAECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSSITGR 125
Query: 119 -------------------------------DKFKLALKIRHPKSRLEQILCACKTKNKC 147
D+ +LA R PK R+ + CK K C
Sbjct: 126 SSSRAWVVRVIGRLTAALTIAHASQTDPAFADRIRLA---RDPKRRMAAVWSYCKGKMTC 182
Query: 148 EGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
+ DE D G + EPL+K GCG QP + +G+ ++ YK + + +++ + +
Sbjct: 183 Q-PDE-DQGDAEGMENVEPLKKGHGGCGHQQPQIRKEGLKLLLHYKKNKNEEEEEFKAAQ 240
Query: 208 PVERKQT 214
P +R T
Sbjct: 241 PDKRPFT 247
>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
Length = 1612
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 71/186 (38%), Positives = 102/186 (54%), Gaps = 26/186 (13%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ +QF + SP+EIRK SV ++ H +T E G P GGL DL++GT ++ F C +C +
Sbjct: 9 RITSIQFGLFSPEEIRKASVVQVIHPETMENGFPKPGGLIDLKMGTTERAFLCSSCEKDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KPMFH+G+M + I+ CVC+ CSKI D+ +H K
Sbjct: 69 FSCPGHFGHIELTKPMFHVGYMSKIKKILECVCYYCSKIKIDK-----------KHLKKD 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + +CKTK+ CEG E SGCG QP + +GM ++A K
Sbjct: 118 LNFVWNSCKTKSVCEG---------------ELTEAGFSGCGNKQPVIKKEGMGLVAFMK 162
Query: 194 AQRKKN 199
+ +
Sbjct: 163 GEEDSD 168
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 16/221 (7%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGT 59
M F +S V +V+ +QF I+SP+EI+ SV +I+ + E G GGL D ++GT
Sbjct: 1 MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT 60
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
ID+ FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ CVC++C K+ D D
Sbjct: 61 IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP 120
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG---EEPLRKRKS---- 172
A++ + RL+ I K K CE DE+D D +E L+++K+
Sbjct: 121 MVANAVRRIKAQHRLKAIWALAKDKKHCE-PDELDEKD--NGDATFEDEYLQEQKAAMKG 177
Query: 173 --GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVER 211
GCG QP G+ ++ +K K D+ EP ER
Sbjct: 178 HGGCGHEQPVWRKKGLKLMGVWKPTDKGEDEAA---EPEER 215
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 16/221 (7%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGT 59
M F +S V +V+ +QF I+SP+EI+ SV +I+ + E G GGL D ++GT
Sbjct: 1 MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT 60
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
ID+ FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ CVC++C K+ D D
Sbjct: 61 IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP 120
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG---EEPLRKRKS---- 172
A++ + RL+ I K K CE DE+D D +E L+++K+
Sbjct: 121 MVANAVRRIKAQHRLKAIWALAKDKKICE-PDELDEKD--NGDATFEDEYLQEQKAALKG 177
Query: 173 --GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVER 211
GCG QP G+ ++ +K K D+ EP ER
Sbjct: 178 HGGCGHEQPVWRKKGLKLMGVWKPTDKGEDEAA---EPEER 215
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 16/221 (7%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGT 59
M F +S V +V+ +QF I+SP+EI+ SV +I+ + E G GGL D ++GT
Sbjct: 1 MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT 60
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
ID+ FKC+TC M ECPGHFGH+ELA+P+FH GF+ + I+ CVC++C K+ D D
Sbjct: 61 IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP 120
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG---EEPLRKRKS---- 172
A++ + RL+ I K K CE DE+D D +E L+++K+
Sbjct: 121 MVANAVRRIKAQHRLKAIWALAKDKKICE-PDELDEKD--NGDATFEDEYLQEKKATMKG 177
Query: 173 --GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVER 211
GCG QP G+ ++ +K K D+ EP ER
Sbjct: 178 HGGCGHEQPVWRKKGLKLLGVWKPTDKGEDEA---TEPEER 215
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM
1558]
Length = 1808
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 7/210 (3%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGT 59
M F +S +V+ +QF ++SP+EI+ SV +I+H + E GGL D R+GT
Sbjct: 1 MTITFPYSSAPTRQVKEIQFGVMSPEEIKAFSVAKIEHPEVMDENNRQKVGGLMDPRMGT 60
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
ID+ FKC+TC M ECPGHFGH+ELA+P+FH GFM + I+ C+CF+C K+ D D
Sbjct: 61 IDRNFKCQTCLEGMAECPGHFGHIELARPVFHGGFMVKVKKILECICFSCGKLRVDVRDP 120
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR------KSG 173
++ P+ RL+ I + CE + D ++ E K G
Sbjct: 121 MVANIVRRVKPQHRLKAIWAIASKRTSCETDERDDENGDATNEAEFQAEKELGVPKGHGG 180
Query: 174 CGALQPTLTIDGMNMIAEYKAQRKKNDDQG 203
CGA QP + + ++A+ K D+ G
Sbjct: 181 CGADQPLWRKEALKLMAKSKPSTTDKDESG 210
>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1904
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 86/248 (34%), Positives = 131/248 (52%), Gaps = 35/248 (14%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSV--------TEIDHGKTT----ERGMPM 48
M + F+FS ++ +V+ +QF ILSPDE+R+MSV +I G T + G +
Sbjct: 1 MPSQFSFSSARLCRVQKLQFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAV 60
Query: 49 AGGLSDLRLGTIDKRFKCETCS--------SNMGECPGHFGHLELAKPMFHIGFMKTLLT 100
GG +D R+GT+D +C TC + + +CPGHFGH+ELA+P++H GF+ L
Sbjct: 61 YGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLK 120
Query: 101 IMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGD--------- 151
++R VCF+CS++ D+ D K+K AL I++PK+RL I C+ KC G
Sbjct: 121 VLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMD 180
Query: 152 EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVER 211
+ G +G + SGCG L P T G+ + EY D +P +R
Sbjct: 181 LDGMGGENGGEGGGGGGEHASGCGGLLPKFTRQGLQVEVEYPP------DMDDVPRSGDR 234
Query: 212 KQTLTAER 219
+Q L+A +
Sbjct: 235 RQYLSASK 242
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
Length = 1756
Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats.
Identities = 74/193 (38%), Positives = 112/193 (58%), Gaps = 13/193 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S V + +QF ++SP++I+ MSV + + +T + R P GL+D LG+ID+
Sbjct: 6 FTHSSAPVKTIEEIQFGLMSPEQIKTMSVCHVIYPETMDETRTKPRDSGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ MGECPGHFGH+ELAK ++H GF+K + I+ VC C K+L D D +F+
Sbjct: 66 QFKCKTCTQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLECYKVLGDRNDPEFE 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEG--GDEIDVLSLLGHDGEEPLRKRKS----GCGA 176
A+ R PK R ++ CK K +CE +E D G D LR++ GCG
Sbjct: 126 QAVNTRDPKQRFHRVWLHCKKKKRCENELKEEKD-----GPDSFPELRRQNQVPHDGCGN 180
Query: 177 LQPTLTIDGMNMI 189
++ + + +I
Sbjct: 181 VKHDIRAKALQLI 193
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 74/193 (38%), Positives = 112/193 (58%), Gaps = 13/193 (6%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
FT S V + +QF ++SP++I+ MSV + + +T + R P GL+D LG+ID+
Sbjct: 6 FTHSSAPVKTIEEIQFGLMSPEQIKTMSVCHVIYPETMDETRTKPRDSGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC+ MGECPGHFGH+ELAK ++H GF+K + I+ VC C K+L D D +F+
Sbjct: 66 QFKCKTCTQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLECYKVLGDRNDPEFE 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEG--GDEIDVLSLLGHDGEEPLRKRKS----GCGA 176
A+ R PK R ++ CK K +CE +E D G D LR++ GCG
Sbjct: 126 QAVNTRDPKQRFHRVWLHCKKKKRCENELKEEKD-----GPDSFPELRRQNQVPHDGCGN 180
Query: 177 LQPTLTIDGMNMI 189
++ + + +I
Sbjct: 181 VKHDIRAKALQLI 193
>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1765
Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats.
Identities = 80/219 (36%), Positives = 123/219 (56%), Gaps = 27/219 (12%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDKRFK 65
+P K + +QF +LSP+E + MSV I + + + R P GGL+D LG++D++FK
Sbjct: 11 APLKT--IEEIQFGVLSPEETKNMSVAHIQYPEAMDDTRTKPREGGLNDPLLGSVDRQFK 68
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FKLA 124
C+TC+++M ECPGHFGH+ELAKP++H GF+K I+ VC C K+L D+++D+ F A
Sbjct: 69 CKTCNNSMSECPGHFGHIELAKPVYHPGFIKKTKKILEMVCHECGKLLCDKDNDEGFLDA 128
Query: 125 LKIRHPKSRLEQILCACKTKNKCE------GGDEIDVLSLLGHDGEEPLRKR--KSGCGA 176
++ R PK R ++ CK K CE GGD+ G + +P + GCG+
Sbjct: 129 IRTRDPKVRFARVWAMCKDKKFCENETTKKGGDKD------GFESSKPQVTKVPHGGCGS 182
Query: 177 LQPTLTIDGMNMIAEYK--------AQRKKNDDQGQLPE 207
P + + + A K AQ+K+ D+ PE
Sbjct: 183 AHPNIRQKALALFARVKGETNDEETAQKKEIKDKPITPE 221
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats.
Identities = 78/194 (40%), Positives = 111/194 (57%), Gaps = 11/194 (5%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKR 63
F S + VR VQF ILSP+EIR +SV +I+ + E G P GGLSD RLGT+D+
Sbjct: 9 FAHSTAPIRAVREVQFGILSPEEIRAISVCKIEVPEIKDESGKPRIGGLSDPRLGTLDRN 68
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK-FK 122
+KC+TC ECPGHFGH++LAKP+FHIG++ + I+ CVC++C K+ AD D F
Sbjct: 69 YKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCYHCGKLKADVVTDPVFD 128
Query: 123 LALKIRH--PKSRLEQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQ 178
+K K R +++ C K CE D E D + EE + GCG +Q
Sbjct: 129 QIVKATRGSRKRRFQRVWEYCSKKMVCEADDPKEEDEMGF-----EEQAKPGHGGCGRVQ 183
Query: 179 PTLTIDGMNMIAEY 192
P + +G+ + ++
Sbjct: 184 PNIRREGLKLFTQW 197
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
K + ++F ILSPDEI+ SV EI + E G+P GGLSD R+G ID+ +CETC
Sbjct: 15 KAKRIKFGILSPDEIKAGSVCEITTPEHQENGVPKPGGLSDPRMGPIDRDLRCETCHGTA 74
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK--IRHPK 131
ECPGHFGH++LAKP+ H+G + ++ ++RC+C +CSK+L D DD+ K L+ PK
Sbjct: 75 SECPGHFGHIDLAKPVVHVGMISKIVQVLRCICKSCSKLLVDLSDDEVKEILRRTKNDPK 134
Query: 132 SRLEQILCACKTKNKCEGG-----DEIDVLSLLGHDGEEPLRKR-KSGCGALQP 179
RL+ I C + CE G D D + L EE L K+ SGCGA QP
Sbjct: 135 KRLKAIAKKCAGRKVCEAGTGMDDDRPDDIQL---SPEEELEKQGHSGCGAEQP 185
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 35/244 (14%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +VR + F I P+ +++MSV E+ + + G+P + GL+DLR+GT D R C
Sbjct: 11 YSSCELKRVRSIDFGIFEPEFLKRMSVCEVTSAELYKDGLPNSCGLNDLRMGTTDYRINC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ ++ CPGHFGH+ LAKPM+H GF+ T++ ++RCVC+NC ++L ED + +ALK
Sbjct: 71 STCNMDVKHCPGHFGHITLAKPMYHYGFITTVMKVLRCVCYNCGRLLISPEDPR-AMALK 129
Query: 127 IRHPKSRLEQILCACKTKNKCE-------------GGDEIDVLSLLGHDGEEPLRKRK-- 171
R +L ++ C + KCE G + +S L + +EP+
Sbjct: 130 NRPGAQKLHRMAELCVSHYKCETNIKGQTDGKADGNGLTMGSISGLSNGADEPIDGNPVG 189
Query: 172 -----------------SGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQT 214
GCG QP +G N++ ++ ++K + G+ E +E K+T
Sbjct: 190 GPKAEQNGSVKKLDGIGMGCGYPQPKYYKEGPNLMIQFSDKQK--ELLGEADEYIEGKRT 247
Query: 215 LTAE 218
L AE
Sbjct: 248 LYAE 251
>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
Length = 1569
Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats.
Identities = 73/180 (40%), Positives = 103/180 (57%), Gaps = 26/180 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+V +QF + SP+EIRK SV I H +T E G+P GL DLR+GT ++ F C+TC+S
Sbjct: 9 RVTSIQFGLFSPEEIRKGSVVHILHPETVENGIPKENGLIDLRMGTTERSFLCQTCNSTS 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
EC GH+GH+EL+KPMFHIG++ + + CVCF CSKI + ++ +
Sbjct: 69 FECVGHYGHIELSKPMFHIGYLAKIKKTLECVCFYCSKIKGSK-----------KNLRPG 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
LE K+K+ CEG D + + KSGCG QP++ DG+N+IA K
Sbjct: 118 LEDCWTVLKSKSICEGED---------------IPEGKSGCGNRQPSIRKDGLNLIAFMK 162
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 25/217 (11%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
FSP + KVR ++F + P+ I+++SV E+ + G+P GGL+DLR+GT D R C
Sbjct: 11 FSPCDLKKVRGIEFGMFDPEMIKRLSVCEVTQTELYREGVPHTGGLNDLRMGTTDARHNC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC ++ C GHFGH+ LAK M+H + ++L ++RCVCFNCS +L D+ED + K +K
Sbjct: 71 LTCFMDVKYCTGHFGHITLAKEMYHCCLLTSVLKVLRCVCFNCSSLLCDKEDPRVKNLMK 130
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
+R +RL ++ C + +C+ E + GCG QP T +G
Sbjct: 131 LRSTGTRLLKMAEICTSSPRCQQA--------------EVSGSKMKGCGYPQPKYTKEGT 176
Query: 187 NMIAEYKAQRKKNDDQGQLPEPV-----ERKQTLTAE 218
+++ ++ +D Q+ E V E K++ TAE
Sbjct: 177 SLMIQF------SDKHRQMLEEVDEDCEEIKRSFTAE 207
>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
Length = 1541
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 77/192 (40%), Positives = 108/192 (56%), Gaps = 26/192 (13%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
K+ + F + SP+EI+K SV + H +T E G+P GL DLR+GT +K F C+TC+ NM
Sbjct: 8 KIIGINFGLFSPEEIKKTSVVHVIHPETIENGVPKENGLIDLRMGTTEKNFLCQTCNENM 67
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
+C GHFGH+EL KPMFHIG++ + ++ C+CF CSKI FKL LK +
Sbjct: 68 FDCVGHFGHIELCKPMFHIGYITKIKKLLECICFYCSKI------KDFKL-LKEKTKNYT 120
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
LE+ KTK C+ +E + K GC QP + +GMN+IA K
Sbjct: 121 LEEAWNILKTKTFCDSENE---------------KGEKIGCCNKQPIIKKEGMNLIAFMK 165
Query: 194 AQRKKNDDQGQL 205
NDD+G++
Sbjct: 166 G----NDDEGKV 173
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 98/161 (60%), Gaps = 11/161 (6%)
Query: 47 PMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVC 106
P GGL+D RLG+ID+ FKC+TC +M ECPGHFGH+ELAKP+FHIGF+ + + CVC
Sbjct: 8 PRDGGLNDPRLGSIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVC 67
Query: 107 FNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP 166
+C K+L D+ + A+KIR PK R + CKTK CE ++ +GE
Sbjct: 68 MHCGKLLVDDTNPLMAQAIKIRDPKKRFNAVWNVCKTKMVCEA-------DIINEEGE-- 118
Query: 167 LRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
+ + GCG QPT+ DG+ + +K + K+ D+ + PE
Sbjct: 119 VTSGRGGCGHTQPTVRRDGLKLWGTWK--QNKSFDESEQPE 157
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 126/236 (53%), Gaps = 50/236 (21%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEI--------------------RKMSVTEIDHGKTTER 44
F S ++ +V VQF +LSPDEI RKMSV I+ T E+
Sbjct: 7 FPHSTAELCRVDAVQFGVLSPDEIKRANAGGGTDGSTVIFPRAQRKMSVCAIESSDTYEK 66
Query: 45 GMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRC 104
G P GGLSD R+GT+D+ CET + + PG+FGHLELAKP++H GF+ +L ++RC
Sbjct: 67 GRPKRGGLSDPRMGTMDRGAVCETDGCDSVQTPGYFGHLELAKPVYHHGFINVVLRVLRC 126
Query: 105 VCFNCSKILAD-EEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG 163
V ++ S++L +ED KF ++I++PK+RL+++ ACKTK+ C
Sbjct: 127 VGYSSSQLLLHKDEDPKFAQLMRIKNPKNRLKKLTDACKTKSVC---------------- 170
Query: 164 EEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G QP ++GM + AE+K + D LPE ERK +TAER
Sbjct: 171 --------PYTGTAQPQYRLEGMKITAEFKHR-----DDELLPEGGERKVVVTAER 213
>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
Length = 1875
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/199 (37%), Positives = 116/199 (58%), Gaps = 11/199 (5%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF +LSP+EI+ MSV I + +T ++ P GL+D RLGTID+ + C TC +
Sbjct: 154 IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPRDQGLNDPRLGTIDRMYSCATCKED 213
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+ CPGHFGH+ELA P+FH+GF+ + I+ VC NC ILAD +++ A+K + K
Sbjct: 214 IQVCPGHFGHIELATPVFHVGFVIKIKKILETVCHNCGLILADFNRPEWQAAIKTKDAKK 273
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP-TLTIDGMNMIAE 191
R E+I K + +CE E D D ++ + GCG+ P + +G+ + A
Sbjct: 274 RFEKIWRLSKIRTRCEQTAEDD-------DPKKAPKIPHGGCGSDAPDAIRKEGLKLTAT 326
Query: 192 YKAQRKKNDD-QGQLPEPV 209
YK+++K DD G EP+
Sbjct: 327 YKSKKKDEDDGTGDRKEPI 345
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 105/188 (55%), Gaps = 21/188 (11%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ KV+ VQF ILSP EI +MSVTE I + E G P GGL D R G +++ +CETC
Sbjct: 12 IRKVKRVQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRSARCETC 71
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR- 128
+ ECPGHFGH++L KP+FHIGF+ + I+ CVC+ CSK+L + + + L
Sbjct: 72 HRTINECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIREILDKSE 131
Query: 129 -HPKSRLEQILCACKTKNKCEG--GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
HP+ R+ + CK N CE G+EI GH GCG QP + G
Sbjct: 132 GHPRKRMAHVYDICKRINICENDIGEEIT-----GH----------IGCGRYQPRIRRQG 176
Query: 186 MNMIAEYK 193
+ MI E+K
Sbjct: 177 LGMIGEWK 184
>gi|321468524|gb|EFX79508.1| hypothetical protein DAPPUDRAFT_319346 [Daphnia pulex]
Length = 878
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 105/188 (55%), Gaps = 21/188 (11%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ KV+ VQF ILSP EI +MSVTE I + E G P GGL D R G +++ +CETC
Sbjct: 12 IRKVKRVQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRSARCETC 71
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR- 128
+ ECPGHFGH++L KP+FHIGF+ + I+ CVC+ CSK+L + + + L
Sbjct: 72 HRTINECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIREILDKSE 131
Query: 129 -HPKSRLEQILCACKTKNKCEG--GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
HP+ R+ + CK N CE G+EI GH GCG QP + G
Sbjct: 132 GHPRKRMAHVYDICKRINICENDIGEEIT-----GH----------IGCGRYQPRIRRQG 176
Query: 186 MNMIAEYK 193
+ MI E+K
Sbjct: 177 LGMIGEWK 184
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 26/193 (13%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
F ++ +QF + SP+EIRK SV +I H +T E G P +GGL DL++GT ++ F C
Sbjct: 2 FDEIVTKRISSIQFGLFSPEEIRKSSVVQIIHPETMENGFPKSGGLIDLKMGTTERAFLC 61
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
+C + CPGHFGH+EL KPMFH+G+M + I+ CVCF CS +L +
Sbjct: 62 SSCEKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCS-----------RLKIS 110
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
++ K L + KTK+ CEG +G +G +GCG QP + +GM
Sbjct: 111 TKNLKKDLNFVWNISKTKSVCEGE--------IGENG-------FTGCGNKQPVIKKEGM 155
Query: 187 NMIAEYKAQRKKN 199
++IA K + + +
Sbjct: 156 SLIAFMKGEEESD 168
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Query: 43 ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIM 102
E+ P GGL+D RLG+ID+ FKC+TC M ECPGHFGH+ELAKP+FHIGF+ + +
Sbjct: 3 EQNKPRVGGLNDPRLGSIDRNFKCQTCGEGMNECPGHFGHIELAKPVFHIGFISKIKKVC 62
Query: 103 RCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHD 162
CVC +C K+L DE ++ FK A++I+ PK R + KTK CE + +
Sbjct: 63 ECVCMHCGKLLLDETNELFKQAIRIKDPKKRFNAVWNLSKTKMICEPNYPV--------E 114
Query: 163 GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQ 202
E + GCG QPT+ DG+ + ++ + D++
Sbjct: 115 DESGQSVSRGGCGNSQPTVRRDGLKLWGTWRKGKDLEDNE 154
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 78/194 (40%), Positives = 112/194 (57%), Gaps = 18/194 (9%)
Query: 31 MSVTE---IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAK 87
MSVT I + +T E G P GGL D R G +D+ C+TCS N+ CPGHFGH+ELAK
Sbjct: 1 MSVTNDGGIKYAETMEGGKPKIGGLMDPRQGCVDRGSICQTCSGNVSNCPGHFGHVELAK 60
Query: 88 PMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC--ACKTKN 145
P+FHIGFMK L ++RCVCF+CSKIL D + + + L+ +R + CK++
Sbjct: 61 PVFHIGFMKKTLKLLRCVCFHCSKILVDVQSPQIQEILRKTKNDNRRRMMFMYEECKSRT 120
Query: 146 KCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQL 205
+C ++ + G + + +++GCG QP G+ + AE+ KK +++ Q
Sbjct: 121 ECLSNED----QIGGENDTLENKTKRAGCGRYQPRFRRIGLELTAEW----KKINEESQ- 171
Query: 206 PEPVERKQTLTAER 219
ERK TLTAER
Sbjct: 172 ----ERKITLTAER 181
>gi|321447689|gb|EFX61131.1| hypothetical protein DAPPUDRAFT_70163 [Daphnia pulex]
Length = 860
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 114/214 (53%), Gaps = 30/214 (14%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ +V+ VQF +LSPDEIR+MSVTE I + + + G P G L D R G I + +C+TC
Sbjct: 12 IRQVKRVQFGLLSPDEIRRMSVTEGGIKYEEIFKDGKPRLGRLMDPRQGAIHQSARCQTC 71
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKI 127
M +CPGHFGH++LAKP+FH+GF+ + I+ CVCF CSK+L + K K L
Sbjct: 72 QRTMNDCPGHFGHIDLAKPVFHVGFLIKTIKILNCVCFYCSKLLVSPNNPKIKEILVKSQ 131
Query: 128 RHPKSRLEQILCACKTKNKCEG--GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
P+ R+ + CK N CE G+E GH GCG QP + G
Sbjct: 132 GQPRKRMAHVYDICKRINICENDIGEETT-----GH----------IGCGRYQPRIRRQG 176
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ MI E+K N+D E LTAER
Sbjct: 177 LGMIGEWK---HVNEDSQ------ETTIVLTAER 201
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/206 (36%), Positives = 114/206 (55%), Gaps = 3/206 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F S + V+ +QF + SP+EI+ MSV I++ +T +R P GL+D +LG+ID+
Sbjct: 6 FPHSDAPLKTVQEIQFGLFSPEEIKNMSVCHIEYPETMDEQRHRPREKGLNDPKLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+C TC CPGHFGH+ELA+P+FH+GF+ + I+ VC NC KILADE + F
Sbjct: 66 GTQCATCKEVPEICPGHFGHIELAQPVFHVGFIIKIKKILESVCHNCGKILADESNPAFA 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR-KRKSGCGALQPTL 181
A+++R PK R E + CK + C+ + G D + L+ K GCG QP +
Sbjct: 126 QAIRLRDPKRRFEAVHKICKGISICQVDAPPEDDGGYGPDPKAALKVKGHGGCGNAQPII 185
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQLPE 207
+ + + K + D++G E
Sbjct: 186 RKEQLRLNGTIKVAKSDEDEKGSKAE 211
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/208 (36%), Positives = 115/208 (55%), Gaps = 28/208 (13%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKR 63
F S ++ KVR VQF +L+PDE+RKMSV I++ +T +RG+P G++D R+GT+DK
Sbjct: 9 FAQSYVELHKVRAVQFGLLNPDEVRKMSVVNINNERTYDDRGIPNFSGINDPRMGTMDKE 68
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKL 123
+C TC + +CPGHFGH+ELAKP++H G ++ + ++RCVCF CSK+LA++E K +
Sbjct: 69 LRCFTCKGSQADCPGHFGHIELAKPVYHAGLLEFIRKVLRCVCFYCSKLLAEKE--KLEE 126
Query: 124 ALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
+I+ +RL + L C C+ CG QP +
Sbjct: 127 LRRIKTSSARLARALKLCDGIRLCK------------------------ECGHKQPKFSK 162
Query: 184 DGMNMIAEY-KAQRKKNDDQGQLPEPVE 210
G+ + +Y Q D+ Q +P E
Sbjct: 163 TGLKIQVDYMDDQIDAGRDRKQFLQPDE 190
>gi|40217261|emb|CAD67612.1| largest subunit of RNA polymerase II [Drosophila pseudoobscura]
Length = 147
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 92/135 (68%), Gaps = 4/135 (2%)
Query: 14 KVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+ +C+TC+
Sbjct: 13 QVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAG 72
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-H 129
NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K +
Sbjct: 73 NMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQ 132
Query: 130 PKSRLEQILCACKTK 144
P+ RL + CK K
Sbjct: 133 PRKRLAYVYDLCKGK 147
>gi|313235260|emb|CBY10825.1| unnamed protein product [Oikopleura dioica]
Length = 240
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 14/162 (8%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKM----------SVTEIDHGKTTERGMPMAGGLSDL 55
T S + ++R VQF ILSPDEI+++ + D+GK + R P G+ D
Sbjct: 5 TESSVTLRRIRHVQFGILSPDEIKRVVSSPGLIHPEATERDDYGKASNR--PKMDGILDP 62
Query: 56 RLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
R G +D+ +C+TC+ NM +CPGHF H+ELAKP+FHIGF L +RCVCF CSK+L D
Sbjct: 63 RQGVVDRFSRCQTCAGNMNDCPGHFAHIELAKPVFHIGFFNKTLRALRCVCFFCSKMLVD 122
Query: 116 EEDDKFK--LALKIRHPKSRLEQILCACKTKNKCEGGDEIDV 155
+ + K LA P+ RL+ + C+ K KCEGGD+ +
Sbjct: 123 KNNQKMASILARTKSQPRKRLDGVYVLCRGKQKCEGGDDFET 164
>gi|313247739|emb|CBY15868.1| unnamed protein product [Oikopleura dioica]
Length = 523
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 118/216 (54%), Gaps = 36/216 (16%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFK 65
T S + ++R VQF ILSPDEI++MS + D+GK + R P G+ D R G +D+ +
Sbjct: 5 TESSVTLRRIRHVQFGILSPDEIKRMSERD-DYGKASNR--PKMDGILDPRQGVVDRFSR 61
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--L 123
C+TC+ NM +CPGHF H+ELAKP+FHIGF L +RCVCF CSK+L + + K L
Sbjct: 62 CQTCAGNMNDCPGHFAHIELAKPVFHIGFFNKTLRALRCVCFFCSKMLVHKNNQKMASIL 121
Query: 124 ALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
A P+ RL+ + C+ EG ++ H+ GCG QP+
Sbjct: 122 ARTKSQPRKRLDGVYVLCRG----EG--------VIPHN----------GCGRFQPSYRR 159
Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
DG+ + A +K K NDD E+ +TAE+
Sbjct: 160 DGLTITATWK---KVNDDAQ------EKTVEMTAEK 186
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 16/209 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S + V +QF + S E +++V EI++ +T +R P G +D LGTID+
Sbjct: 6 FPYSSAPLRTVEEIQFGLFSAKETERLAVIEIEYPETMDEQRLRPREKGPNDPHLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC TC NM ECPGHFG ++LA P++H GFM + I+ VC NC KI A ++++F+
Sbjct: 66 NFKCSTCEENMSECPGHFGVIKLATPVYHYGFMGKVKKILETVCLNCGKIKA-LDNEEFR 124
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR----KRKSGCGALQ 178
A+ +R K R + + K +N CE D ++PL+ + GCG +Q
Sbjct: 125 HAISLRDRKRRFDAVWRLSKPRNVCEADPP--------EDPDQPLKGPAPPKHGGCGNMQ 176
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P + G+ + A +KA RK D++ P+
Sbjct: 177 PEIRRSGLQLWATWKA-RKGEDEEDTTPD 204
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 112/219 (51%), Gaps = 37/219 (16%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F +S +V KV+ VQF +LSPDEIR+MSV EI E G P GL D RLG I +
Sbjct: 7 FLYSSAEVKKVKAVQFGVLSPDEIRRMSVCEIKFETAFEMGKPKTEGLMDPRLGAIGRDL 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK---- 120
C+TC + CPGHFGH+EL KPMF+IGF L ++RCVCF CSK+L D D K
Sbjct: 67 PCKTCHCDEKNCPGHFGHIELVKPMFNIGFFGMTLRVLRCVCFFCSKLLIDPRDPKADFE 126
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
K L+I++ +RL+++ C C+ C QP
Sbjct: 127 VKKVLRIKNRINRLKKVQNLCSKVKICK------------------------HCSNEQPK 162
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+G+ AE+K G + +E+KQ ++AE+
Sbjct: 163 FAKEGLQFRAEFK---------GSADDTMEKKQIVSAEK 192
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/201 (38%), Positives = 112/201 (55%), Gaps = 23/201 (11%)
Query: 36 IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS-------SNMGECPGHFGHLELAKP 88
I +T G P+ GG+ D R+GT D R +C+TC + +CPGHFGH+ELA+P
Sbjct: 18 ISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHIELARP 77
Query: 89 MFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCE 148
M+H+GF+K +L I+R VCF+CSKIL+DE D +F+ A+KI+ K RL+ + C K CE
Sbjct: 78 MYHLGFIKEVLKILRSVCFHCSKILSDERDHRFRSAMKIKDGKRRLKAVFEICNGKKLCE 137
Query: 149 GGDEIDV--------LSLLG--HDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
G E+D+ L L G D + GCG LQP G+ ++ E+ Q +
Sbjct: 138 YGAEVDMEKMREDLNLGLQGGLDDKTKSKEGGHGGCGGLQPIYKRQGIKILVEFPEQME- 196
Query: 199 NDDQGQLPEPVERKQTLTAER 219
+P +RKQ L A +
Sbjct: 197 -----DVPGSGDRKQNLPAAK 212
>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
Length = 1255
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 26/193 (13%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
F ++ +QF + SP+EIRK SV +I H +T E G P +GGL DL++GT ++ F C
Sbjct: 2 FDEIVTKRISSIQFGLFSPEEIRKSSVVQIIHPETMENGFPKSGGLIDLKMGTTERAFLC 61
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
+C + CPGHFGH+EL KPMFH+G+M + I+ CVCF CS +L +
Sbjct: 62 SSCEKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCS-----------RLKIS 110
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
++ K L + KTK+ CEG +G +G +GCG QP + + M
Sbjct: 111 TKNLKKDLNFVWNISKTKSVCEGE--------IGENG-------FTGCGNKQPVIKKELM 155
Query: 187 NMIAEYKAQRKKN 199
++IA K + + +
Sbjct: 156 SLIAFMKGEEESD 168
>gi|452823901|gb|EME30907.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 741
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 116/221 (52%), Gaps = 38/221 (17%)
Query: 3 NCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDK 62
+ T S ++ KV +QF ILSP+EIR+ SV I E+G P GGL D RLG ID+
Sbjct: 2 DALTVSSVELKKVSALQFGILSPEEIRRYSVAPIQREIAFEQGRPKEGGLMDQRLGAIDR 61
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
F C TC S+ +CPGHFGH+ELA+P+++ GF+ + L ++RC+C+ CSK+L + ED
Sbjct: 62 DFPCRTCHSSFLDCPGHFGHIELAQPVYNPGFLASTLKVLRCICYYCSKLLINTEDSSIA 121
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
LK ++EQI K LG P K CG QP L
Sbjct: 122 SRLK------QIEQIKKGTKR---------------LGLFLSLPRLKECRFCGNAQPKLL 160
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPV----ERKQTLTAER 219
D ++++AE+ P+P E++Q +TAE+
Sbjct: 161 RDALSIVAEF-------------PDPPEGGGEKRQQITAEK 188
>gi|321451593|gb|EFX63195.1| hypothetical protein DAPPUDRAFT_335810 [Daphnia pulex]
Length = 713
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 20/184 (10%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
V+ VQF ILSPDEI + SVTE I H + E G GGL D R G I++ +C TC
Sbjct: 15 VKRVQFGILSPDEIERQSVTEGGIIHPEIYDEGGKRKLGGLMDPRQGVINRSARCTTCKR 74
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--H 129
++ ECPGHFGH++LAKP++HIGF+ + I+RCVCF CSK+L + K L I
Sbjct: 75 SINECPGHFGHIDLAKPVYHIGFLMKTIKILRCVCFYCSKLLVSPNNPSIKKILVISKGQ 134
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMI 189
P++R+ + CK N C EID+ GH GCG QP + G+ +I
Sbjct: 135 PRTRMAHVHDLCKGINIC----EIDI-ETTGH----------VGCGRYQPKIRRQGLELI 179
Query: 190 AEYK 193
E+K
Sbjct: 180 GEWK 183
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 26/182 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SP+EIR SV I H + E G+P GGL DLR+GT D+ + C++C +
Sbjct: 9 QIKSIQFGLFSPEEIRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KPMFH+G++ + ++ CVCF CSKI + R +S
Sbjct: 69 FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKVSK-----------RGVRST 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + K+K CEG E L KSGCG QP + +G+ ++A K
Sbjct: 118 LNNVWSMSKSKLVCEG---------------EILDNGKSGCGNRQPVIKKEGLTLVAFMK 162
Query: 194 AQ 195
+
Sbjct: 163 GE 164
>gi|213556958|gb|ACJ53770.1| RNA polymerase II [Plasmodium gallinaceum]
Length = 2200
Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats.
Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 35/239 (14%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S + +V+ ++ +L P+ I+K+SV EI + + G+P GGL+D+R+GTID + C
Sbjct: 9 YSACDLKRVKRLELGVLDPEIIKKISVCEIVNVDIYKDGLPREGGLNDIRMGTIDYKTLC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFGH++LAKPM+H GFM +L ++RCVC++C ++L + + K K K
Sbjct: 69 GTCNMNVKYCPGHFGHIQLAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNMNNSKVKYIEK 128
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGE---------------------- 164
I+ RL ++ C + C+ D L++ + +
Sbjct: 129 IKVNSLRLRKLSELCSSIKVCDHSVHEDSLNINDNSIDNFYNNDLSNLNVNQKMLLNPNT 188
Query: 165 -----EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
E + K CG +QP T +G NM ++ +++ D E K+ L+AE
Sbjct: 189 YSNIFEMVSKEDVDCGCVQPKYTREGPNMFIQFLHSSEEDID--------ESKRKLSAE 239
>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
Length = 1473
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 104/187 (55%), Gaps = 19/187 (10%)
Query: 11 KVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER----GMPMAGGLSDLRLGTIDKR-FK 65
+V KV+ VQF ILSPD+I+ SV E+ KT E+ G P GL D LG + +K
Sbjct: 15 EVVKVKCVQFGILSPDDIKNFSVAEV---KTIEKFDAQGKPKTAGLMDPHLGVPPRAAYK 71
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C TC + CPGHFGH+ LA+P++H GF+ L I+ CVC C ++ DE D F+ AL
Sbjct: 72 CATCHGSDETCPGHFGHINLAEPVYHCGFLTMLQKILGCVCHQCGMLMVDERDIHFRSAL 131
Query: 126 KIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
+++HP++RL I CK+K KC S D E R GCGA P++ G
Sbjct: 132 RLKHPQARLNAIASICKSKKKC---------SHEAMDKSETQVDR--GCGAPHPSILRAG 180
Query: 186 MNMIAEY 192
+N +Y
Sbjct: 181 LNFKVKY 187
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f.
nagariensis]
Length = 1879
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 31/215 (14%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
F +S V +V+ VQFS+ P EI+ SV E+ +T E+G GGLSD R+GT+D+
Sbjct: 7 FPYSSAPVRQVKAVQFSVWDPAEIKAYSVAELVTSETYEKGKAKLGGLSDPRMGTMDRGG 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
C T +N + PG+FGH+ LA+P++HIGF+KT++ ++RCV ++ S++L DK+
Sbjct: 67 ICTTDGANANDSPGYFGHIALARPVYHIGFIKTVIRVLRCVSYHTSRLLV----DKYAYG 122
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L+I + RL + C+ K K G QP+ +D
Sbjct: 123 LRISDSEKRLRYFVHLCQGK------------------------KVDETTGNPQPSYRLD 158
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+ ++AE+ K D+ Q + VERKQ LTA R
Sbjct: 159 GLKIMAEFP---KVKGDEEQEQDNVERKQELTAAR 190
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/188 (34%), Positives = 106/188 (56%), Gaps = 21/188 (11%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M FT+SP ++ + +QF IL+P + KMS EI H +T E+G+P GGL DLR+GT+
Sbjct: 1 MNGAFTYSPVDLSSIDRIQFGILNPHVVEKMSACEIIHAETEEKGLPKEGGLMDLRMGTV 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
+ C TC + ECPGHFGH+ + P F+I F+KT++ I++C C +CS++L + +
Sbjct: 61 NSALSCMTCGCGVSECPGHFGHVNI-HPTFNILFLKTIVKILKCTCVHCSRLLFNRNTPE 119
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK +I + + R +++ K +KC D +GCG +QP
Sbjct: 120 FKRIQQIANKRKRFNELM-KLKPMDKCMIDD-------------------YTGCGGIQPK 159
Query: 181 LTIDGMNM 188
++ + +++
Sbjct: 160 ISKNQLSI 167
>gi|133328|sp|P14248.1|RPB1_PLAFD RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|9943|emb|CAA34560.1| unnamed protein product [Plasmodium falciparum]
Length = 2452
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 35/239 (14%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +V+ ++ +L P+ I+K+SV EI + + G P GGL+D+R+GTID R C
Sbjct: 9 YSACELKRVKRLELGVLDPEIIKKISVCEIVNVDIYKDGFPREGGLNDIRMGTIDYRTLC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFGH+ELAKPM+H GFM +L ++RCVC++C ++L + K K K
Sbjct: 69 GTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNVNSSKVKYIEK 128
Query: 127 IRHPKSRLEQI--LC----ACKTKNKCEGGDEIDV---------LSLLGHDGE------- 164
I+ RL ++ LC AC + EG + D LS L + +
Sbjct: 129 IKVNSLRLRKLAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQMLLNKSN 188
Query: 165 -----EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
E + K CG +QP + +G NM ++ +++ D E K+ L+AE
Sbjct: 189 YTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEEDID--------ESKRKLSAE 239
>gi|124505021|ref|XP_001351252.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|3758846|emb|CAB11131.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 2457
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 35/239 (14%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +V+ ++ +L P+ I+K+SV EI + + G P GGL+D+R+GTID R C
Sbjct: 9 YSACELKRVKRLELGVLDPEIIKKISVCEIVNVDIYKDGFPREGGLNDIRMGTIDYRTLC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFGH+ELAKPM+H GFM +L ++RCVC++C ++L + K K K
Sbjct: 69 GTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNVNSSKVKYIEK 128
Query: 127 IRHPKSRLEQI--LC----ACKTKNKCEGGDEIDV---------LSLLGHDGE------- 164
I+ RL ++ LC AC + EG + D LS L + +
Sbjct: 129 IKVNSLRLRKLAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQMLLNKSN 188
Query: 165 -----EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
E + K CG +QP + +G NM ++ +++ D E K+ L+AE
Sbjct: 189 YTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEEDID--------ESKRKLSAE 239
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 26/182 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SP+EIR S I H + E G+P GGL DLR+GT D+ + C++C +
Sbjct: 9 QIKSIQFGLFSPEEIRNGSAALIVHPEVMESGVPKVGGLIDLRMGTTDRMYLCQSCGGDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KPMFH+G++ + ++ CVCF CSKI + R KS
Sbjct: 69 FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-----------KIPKRGAKST 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + K K CEG E + +SGCG QP + +G+ ++A K
Sbjct: 118 LNSVWSMSKGKTVCEG---------------EAVGDERSGCGNRQPVVKKEGLTLVAFMK 162
Query: 194 AQ 195
+
Sbjct: 163 GE 164
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica
T-34]
Length = 1947
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/203 (35%), Positives = 114/203 (56%), Gaps = 9/203 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+ +V I+ P + R +SV +I+ + E G P GGLSD RLGT+D+ +KC+TC
Sbjct: 182 IGLVPIDIILPGDCRAISVCKIEVPEVKDEAGKPRIGGLSDPRLGTLDRNYKCQTCGEGH 241
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALKIRH--P 130
ECPGHFGH++LAKP+FHIG++ + I+ CVCF+C K+ AD D F +K
Sbjct: 242 QECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADVLTDPVFDQIVKATRGSR 301
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
K R +++ C K CE D D + EE + GCG +QP + +G+ +
Sbjct: 302 KRRFQRVWEYCSKKMVCEADDPKDEDEM---GFEEQAKPGHGGCGRVQPNIRREGLKLFT 358
Query: 191 EYKAQRKKNDD--QGQLPEPVER 211
++K + +++D + + +P +R
Sbjct: 359 QWKKGKGEDEDGEESAIAQPEKR 381
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 26/182 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SPDE+R SV I H + E G+P GGL DLR+GT D+ + C++C +
Sbjct: 9 QIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KPMFH+G++ + ++ CVCF CSKI + + KS
Sbjct: 69 FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-----------KIPRKGIKST 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + K ++ CEG E L +SGCG QP + +G+ ++A K
Sbjct: 118 LSNVWGMSKGRSVCEG---------------EVLDNGRSGCGNKQPVIKREGLTLVAFMK 162
Query: 194 AQ 195
+
Sbjct: 163 GE 164
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 26/182 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SPDE+R SV I H + E G+P GGL DLR+GT D+ + C++C +
Sbjct: 9 QIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KPMFH+G++ + ++ CVCF CSKI + + KS
Sbjct: 69 FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-----------KIPRKGIKST 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + K ++ CEG E L +SGCG QP + +G+ ++A K
Sbjct: 118 LSNVWGMSKGRSVCEG---------------EVLDNGRSGCGNKQPVIKREGLTLVAFMK 162
Query: 194 AQ 195
+
Sbjct: 163 GE 164
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 26/182 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SP+EIR S I H + E G+P GGL DLR+GT D+ + C++C +
Sbjct: 9 QIKSIQFGLFSPEEIRNGSAALIVHPEVMESGVPKVGGLIDLRMGTTDRMYLCQSCGGDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KPMFH+G++ + ++ CVCF CSKI + R KS
Sbjct: 69 FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-----------KIPKRGAKST 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + K K CEG E + +SGCG QP + +G+ ++A K
Sbjct: 118 LNSVWSMSKGKAVCEG---------------EVVGDERSGCGNRQPVVKKEGLTLVAFMK 162
Query: 194 AQ 195
+
Sbjct: 163 GE 164
>gi|156096993|ref|XP_001614530.1| DNA-directed RNA polymerase II largest subunit [Plasmodium vivax
Sal-1]
gi|148803404|gb|EDL44803.1| DNA-directed RNA polymerase II largest subunit, putative
[Plasmodium vivax]
Length = 2379
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 37/241 (15%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +V+ ++ +L P+ I+K+ V EI + + G+P GGL+D+R+GTID + C
Sbjct: 9 YSACELKRVKRLELGVLDPEIIKKIGVCEIVNVDLYKDGLPREGGLNDIRMGTIDYKTLC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFG++ELAKPM+H GFM +L ++RCVC++C ++L + + K K K
Sbjct: 69 GTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNTSNSKVKFIEK 128
Query: 127 IRHPKSRLEQILCACKTKNKCEGGD--EIDVLSLLGHDGE-------------------- 164
I+ RL+++ C+ C+ E D L L + +
Sbjct: 129 IKVNSLRLKRLSEVCQGIKVCDHSSPQEEDTLHLNDNSVDNFYNNDLSNLNVNQQMLLNP 188
Query: 165 -------EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTA 217
E + K CG +QP + +G NM ++ +++ D E K+ L+A
Sbjct: 189 NSYGNIFEIVNKEDVDCGCVQPKYSREGPNMFIQFLHSSEEDID--------ESKRKLSA 240
Query: 218 E 218
E
Sbjct: 241 E 241
>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
Length = 1738
Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats.
Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF +LSP+EI+ MSV I + +T ++ P GL+D +LGTID+ + C TC +
Sbjct: 16 IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYHCSTCKED 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+ CPGHFGH+EL P+FH+GF+ + ++ VC C I AD + A K + K
Sbjct: 76 IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFNHPDWIAATKTKDAKK 135
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK-RKSGCGALQP-TLTIDGMNMIA 190
R ++I +TK+ C+ D D G++ + K GCG+ QP T+ DG+ + A
Sbjct: 136 RFDKIWRMSRTKSTCD-ADGPDA-------GKDKIPKIPHGGCGSAQPDTIRKDGLKLTA 187
Query: 191 EYKAQRKKNDD-QGQLPEPVERKQTLT 216
+K ++K++DD G E + KQ T
Sbjct: 188 TWKQKKKEDDDGSGDRKEVITPKQAQT 214
>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1742
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF +LSP+EI+ MSV I + +T ++ P GL+D +LGTID+ + C TC +
Sbjct: 16 IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYHCSTCKED 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+ CPGHFGH+EL P+FH+GF+ + ++ VC C I AD + A K + K
Sbjct: 76 IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFNHPDWIAATKTKDAKK 135
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK-RKSGCGALQP-TLTIDGMNMIA 190
R ++I +TK+ C+ D D G++ + K GCG+ QP T+ DG+ + A
Sbjct: 136 RFDKIWRMSRTKSTCD-ADGPD-------SGKDKIPKIPHGGCGSAQPDTIRKDGLKLTA 187
Query: 191 EYKAQRKKNDD-QGQLPEPVERKQTLT 216
+K ++K++DD G E + KQ T
Sbjct: 188 TWKQKKKEDDDGSGDRKEVITPKQAQT 214
>gi|83317456|ref|XP_731168.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
gi|23491122|gb|EAA22733.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
yoelii]
Length = 2312
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 36/241 (14%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +V+ ++ +L P+ I+K+ V EI + + G P GGL+D+R+GTID + C
Sbjct: 9 YSACELKRVKRLELGVLDPEIIKKIGVCEIVNVDIYKDGFPRDGGLNDIRMGTIDYKALC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFG++ELAKPM+H GFM +L ++RCVC++C ++L D K K K
Sbjct: 69 GTCNMNVKNCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCDMNSSKVKYIEK 128
Query: 127 IRHPKSRLEQILCACKTKNKCEGG----DEIDV------------LSLLGHDGE------ 164
I+ RL+++ C+ C D I + LS L + +
Sbjct: 129 IKVNSLRLKKLSELCQGIKVCNHSSVQDDNIYINDTSIDNFYNNDLSNLNVNQQMLLNSS 188
Query: 165 -------EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTA 217
E + K CG +QP T +G NM ++ ++D G K+ L+A
Sbjct: 189 NNYSNLFEMISKEDVDCGCVQPKYTREGPNMYIQFLHNNNEDDIDGS-------KRRLSA 241
Query: 218 E 218
E
Sbjct: 242 E 242
>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
Length = 1138
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 108/210 (51%), Gaps = 34/210 (16%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
V+ VQ ILSPDEIR+MSVTE I H E G GGL D R G + ++ KC+TC
Sbjct: 15 VKKVQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQGVVIRKAKCQTCDGT 74
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
+ ECPGHFGH+ LAKP++H+GF + + I+RCVC+ CSK+L + + KFK L P
Sbjct: 75 INECPGHFGHINLAKPVYHVGFFEKTIEILRCVCYYCSKLLVNPNNPKFKEILVKSKDQP 134
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL-TIDGMNMI 189
+ + CK N CE G+ GCG P + + G +
Sbjct: 135 LKCMAHVYDLCKGINICEVGN--------------------GGCGRYLPKIRRLKGFKIN 174
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
E+ K D+ Q E+K LTAER
Sbjct: 175 GEW----KHVDEDSQ-----EKKIVLTAER 195
>gi|313225877|emb|CBY21020.1| unnamed protein product [Oikopleura dioica]
Length = 399
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 6/124 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHG------KTTERGMPMAGGLSDLRLGTID 61
S + K++ VQF IL PDEI++MSVT H ++TE G P GG+ D R G D
Sbjct: 5 SSVTLRKIKRVQFGILGPDEIKRMSVTVPPHSDGIMYPESTENGKPKLGGIMDPRQGVSD 64
Query: 62 KRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF 121
+ +C+TC+ NM +CPGHFGH+ELAKP+FH+GF L I+RC+CF CSK+L D+ + K
Sbjct: 65 RFSRCQTCAGNMNDCPGHFGHIELAKPVFHVGFFNKSLRILRCICFYCSKVLVDKNNPKM 124
Query: 122 KLAL 125
+ L
Sbjct: 125 QSIL 128
>gi|222639932|gb|EEE68064.1| hypothetical protein OsJ_26074 [Oryza sativa Japonica Group]
Length = 112
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 67/76 (88%)
Query: 43 ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIM 102
ERG P GGLSD RLGTID++ KCETC + M ECPGHFGHLELAKPMFHIGF+KT+L+IM
Sbjct: 2 ERGKPKPGGLSDPRLGTIDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIM 61
Query: 103 RCVCFNCSKILADEED 118
RCVCFNCSKILADE +
Sbjct: 62 RCVCFNCSKILADEVN 77
>gi|221055475|ref|XP_002258876.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808946|emb|CAQ39649.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi
strain H]
Length = 2353
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 37/241 (15%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +V+ ++ +L P+ I+K+ V EI + + G+P GGL+D+R+GTID + C
Sbjct: 9 YSACELKRVKRLELGVLDPEIIKKIGVCEIVNVDLYKDGLPREGGLNDIRMGTIDYKTLC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFG++ELAKPM+H GFM +L ++RCVC++C ++L + + K K K
Sbjct: 69 GTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNMNNSKVKYIEK 128
Query: 127 IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGE---------------------- 164
I+ RL+++ C+ C+ + SL +D
Sbjct: 129 IKVNSLRLKRLSDVCQGIKVCDHSSPQEEDSLHLNDNAVDNFYNNNLSNLNVNQQMLLNP 188
Query: 165 -------EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTA 217
E + K CG +QP + +G NM ++ +++ D E K+ L+A
Sbjct: 189 NSYSNIFEMVNKEDVDCGCVQPKYSREGPNMFIQFLHSSEEDID--------ESKRKLSA 240
Query: 218 E 218
E
Sbjct: 241 E 241
>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
Y34]
gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
P131]
Length = 1745
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 21/200 (10%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + + +QF +L+P+EI+ MSV + + T + R P GGL+D LGT D+
Sbjct: 6 FAPSSAPLKTIEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++KC+TC+++M CPGHFGH+ELAKP++H GF+ KIL D++F
Sbjct: 66 QYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFIN-----------KTKKILEMNNDEQFA 114
Query: 123 LALKIRHPKSRLEQILCACKTKNKCE----GGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
AL++R PK+R + ACK K CE G DE D + + P GCG+
Sbjct: 115 QALRLRDPKARFAMVWKACKGKKVCEIETGGKDEKDSIDTATGIEKVP----HGGCGSTH 170
Query: 179 PTLTIDGMNMIAEYKAQRKK 198
P + + + A+ + R++
Sbjct: 171 PDIRKKALQLYAKVEEAREE 190
>gi|389583419|dbj|GAB66154.1| DNA-directed RNA polymerase II largest subunit [Plasmodium
cynomolgi strain B]
Length = 2270
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 37/241 (15%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +V+ ++ +L P+ I+K+ V EI + + G+P GGL+D+R+GTID + C
Sbjct: 9 YSACELKRVKRLELGVLDPEIIKKIGVCEIVNVDLYKDGLPREGGLNDIRMGTIDYKTLC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFG++ELAKPM+H GFM +L ++RCVC++C ++L + + K K K
Sbjct: 69 GTCNMNVKYCPGHFGYIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNTTNSKVKYIEK 128
Query: 127 IRHPKSRLEQILCACKTKNKCEGGD--EIDVLSLLGHDGE-------------------- 164
I+ RL+++ C+ C+ E D L L + +
Sbjct: 129 IKVNSLRLKRLSEVCQGIKVCDHSSPQEEDTLHLNDNSLDNFYNNNLSNLNMNQQMLLNP 188
Query: 165 -------EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTA 217
E + K CG +QP + +G NM ++ ++ D E K+ L+A
Sbjct: 189 NSYSNIFEMVNKEDVDCGCVQPKYSREGPNMFIQFLHSSDEDID--------ESKRKLSA 240
Query: 218 E 218
E
Sbjct: 241 E 241
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 113/191 (59%), Gaps = 12/191 (6%)
Query: 31 MSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMF 90
MSV E+ H +T E+G P GL DLR+GTID C TC N ECPGHFGH+ + P+F
Sbjct: 1 MSVCEVLHAETQEKGKPKESGLMDLRMGTIDHHLSCLTCGGNATECPGHFGHVRI-HPVF 59
Query: 91 HIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKC--E 148
++ F+ T++ +++ VC +C K+LAD+ +FK A K + + R ++++ C+ K+KC E
Sbjct: 60 NVLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFVNRRKRFKEMIDLCR-KDKCIIE 118
Query: 149 GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEP 208
G++ + + + +P + ++GCG LQP ++ DG+ + AEYK Q
Sbjct: 119 TGNKENEQNQEANI--DPTFQPRNGCGGLQPKISRDGLKIFAEYKKDTSAEAKQEL---- 172
Query: 209 VERKQTLTAER 219
KQ LTAER
Sbjct: 173 --TKQELTAER 181
>gi|47195286|emb|CAF94688.1| unnamed protein product [Tetraodon nigroviridis]
Length = 120
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF I+SPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 16 IKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
M ECPGHFGH+ELAKP+FH+GF+ ++ ++RCVCF CSK+L D
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVD 118
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 26/182 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SP+EIR S I H + E G+P GGL DLR+GT D+ + C++C +
Sbjct: 9 QIKSIQFGLFSPEEIRNGSAALIVHPEVMEGGVPKVGGLIDLRMGTTDRMYLCQSCGGDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KP+FH+G++ + ++ CVCF CSKI + R +S
Sbjct: 69 FSCPGHFGHIELTKPIFHVGYISKIKKVLECVCFYCSKIKVPK-----------RGVRST 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + K K+ CEG E + +SGCG QP + +G+ ++A K
Sbjct: 118 LNNVWSMSKGKSVCEG---------------EVVGDGRSGCGNRQPVVKKEGLTLVAFMK 162
Query: 194 AQ 195
+
Sbjct: 163 GE 164
>gi|340055761|emb|CCC50082.1| RNA polymerase IIA largest subunit, fragment, partial [Trypanosoma
vivax Y486]
Length = 1068
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 68/183 (37%), Positives = 101/183 (55%), Gaps = 14/183 (7%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF + +I+ +V ++H K+ E G P+ GG++DLR+GT D F CE
Sbjct: 10 SQMELQKVNEVQFEVFKERQIKAYAVCLVEHAKSYEHGRPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+PMF+IG +L +++CVC +C +L + D L+
Sbjct: 70 TCHRRHPECPGHFGYIELAEPMFNIGVFDLVLQVLKCVCKSCGALLLNTSDTNLLKKLQH 129
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEID--------VLSLLGHDGEEPLRKRKSGCGALQP 179
+RL Q++ C KC ++D V+ LG DG R GCGA QP
Sbjct: 130 AAGVNRLRQVVKMCGL--KCRMSTDMDATEERGESVVGALGTDGIGAAR----GCGASQP 183
Query: 180 TLT 182
++
Sbjct: 184 RIS 186
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats.
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 30/190 (15%)
Query: 31 MSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMF 90
MSV EI+ +T E+G P GGLSD R+GT+D+ CET ++ PG+FGHLELAKP++
Sbjct: 1 MSVCEIETSETYEKGKPKRGGLSDPRMGTMDRGTVCETDGADSVHNPGYFGHLELAKPVY 60
Query: 91 HIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQILCACKTKNKCEG 149
H GF+ +L ++RCV ++ S+IL D E D +F ++I++PK RL+++ ACKT+ +C
Sbjct: 61 HHGFLNVVLKVLRCVGYSSSRILLDPETDARFNQIMRIQNPKHRLKKLTDACKTRTEC-- 118
Query: 150 GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPV 209
G QP+ +GM + A + + D+ LP+
Sbjct: 119 ----------------------PHTGTAQPSYRCEGMKITANF-----EKCDEELLPDGG 151
Query: 210 ERKQTLTAER 219
ERK +TAE+
Sbjct: 152 ERKVVITAEK 161
>gi|169616762|ref|XP_001801796.1| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
gi|160703256|gb|EAT81264.2| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
Length = 1720
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 28/217 (12%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF +LSP+EI+ MSV +I +T + P GL+D RLGTID+ + C TC +
Sbjct: 16 IKEIQFGLLSPEEIKAMSVCQIMFPETMDESNTKPREHGLNDPRLGTIDRMYSCATCKED 75
Query: 73 MGECPGHFGHLELAKPMFHI-------GFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
+ CPGHFGH+ELA P+FH+ GF+ + I+ VC NC I AD + A+
Sbjct: 76 IQVCPGHFGHIELATPVFHVFMVLTALGFVVKIKKILETVCHNCGLITADYNHPDWANAI 135
Query: 126 KIRHPKSRLEQILCACKTKNKCE--GGDEIDVLSLLGHDGEEPLRKRKSGCGALQP-TLT 182
+ + K R ++I +TK CE G+E D ++ + GCG P T+
Sbjct: 136 RTKDAKKRFDKIWRMSRTKKNCEQDTGEE---------DPKKAPKIPHGGCGNTNPDTIR 186
Query: 183 IDGMNMIAEYKAQRKKNDD-QGQLPEPVERKQTLTAE 218
+G+ + A YK ++ ++ D QG +RK+ LT +
Sbjct: 187 KEGVKLTATYKPKKGEDSDGQG------DRKEVLTPQ 217
>gi|407418760|gb|EKF38234.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1733
Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMDLQKVVEVQFEIFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG+++LA+P+F+IG +L +++CVC +C +L D D + L+
Sbjct: 70 TCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQH 129
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
+RL Q++ C K + +S EE + R GCGA QP +
Sbjct: 130 LTGVNRLRQVVKMCGMKCR---------MSTDATTPEEAVVAR--GCGATQPRI 172
>gi|310914369|emb|CBH31020.1| RNA polymerase II largest subunit, partial [Candida pseudofarinosa]
Length = 189
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 62 KRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF 121
+ FKC+TCS +M ECPGHFGH+ELAKP+FHIGF+ + + C+C +C K+L DE +
Sbjct: 1 RNFKCQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAM 60
Query: 122 KLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
A+KIR PK R + CKTK CE DVLS P+ + GCG QPT+
Sbjct: 61 AQAIKIRDPKKRFNAVWSLCKTKMICEA----DVLSNEDDPNSAPVAHGRGGCGHTQPTI 116
Query: 182 TIDGMNMIAEYKAQRKKNDDQGQLPE 207
DG+ + +K + K ++ + PE
Sbjct: 117 RRDGLKLWGTWK--QNKTFEENEQPE 140
>gi|387596460|gb|EIJ94081.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm1]
Length = 1612
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + +V ++F ILSP++I MSV +I+H +T E G+P GGL DLRLGT ++ F C
Sbjct: 3 SDISIRRVESIEFGILSPEDIIAMSVCKIEHPETMESGVPKEGGLVDLRLGTSERGFLCS 62
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC C GHFG++ELAKP+FHIG++ + ++ VCF CSK+ ++
Sbjct: 63 TCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSILHSPKPRTQ 122
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
+ K RL I K + C G L + P K+++GC QPT+ +G++
Sbjct: 123 KERKRRLNYIWNLAKNRAVCMGE--------LVESEDNPEEKQRTGCENRQPTIRKEGLH 174
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++A K + E E K L+AE+
Sbjct: 175 LLAFQKGE-----------ESSEGKTMLSAEK 195
>gi|387594692|gb|EIJ89716.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm3]
Length = 1612
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + +V ++F ILSP++I MSV +I+H +T E G+P GGL DLRLGT ++ F C
Sbjct: 3 SDISIRRVESIEFGILSPEDIIAMSVCKIEHPETMESGVPKEGGLVDLRLGTSERGFLCS 62
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC C GHFG++ELAKP+FHIG++ + ++ VCF CSK+ ++
Sbjct: 63 TCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSILHSPKPRTQ 122
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
+ K RL I K + C G L + P K+++GC QPT+ +G++
Sbjct: 123 KERKRRLNYIWNLAKNRAVCMGE--------LVESEDNPEEKQRTGCENRQPTIRKEGLH 174
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++A K + E E K L+AE+
Sbjct: 175 LLAFQKGE-----------ESSEGKTMLSAEK 195
>gi|72388454|ref|XP_844651.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62360128|gb|AAX80548.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70801184|gb|AAZ11092.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC C +L + + L+
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKTCGALLLNTREQDVHKKLQH 129
Query: 128 RHPKSRLEQIL----CACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
+RL Q+ C+ E G D D G G P R GCGA QP
Sbjct: 130 MTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATR--GCGASQPR 187
Query: 181 LT 182
++
Sbjct: 188 VS 189
>gi|162606578|ref|XP_001713319.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
Length = 1473
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 10/181 (5%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
++++QF ILSPDEI K+SV ++D T E +P GGL D R+GT+DK F C T +
Sbjct: 8 IKLIQFGILSPDEILKLSVVQVDSDMTFEHNLPKLGGLLDQRMGTVDKEFFCTTDMGSFL 67
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
E PG+FGH+ L +P+FH GFM +L I+RC+ SK++ +E K K LKI++ RL
Sbjct: 68 ESPGYFGHISLNRPVFHEGFMDYVLRILRCIDHTTSKLIINENSQKIKNVLKIKNLSQRL 127
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
I C T + + L +E + KR S +QP + DG ++A++ +
Sbjct: 128 NIISKLCLTACNLKKNKFNNFLK------DEIIEKRIS----IQPKYSRDGWCIVAKFDS 177
Query: 195 Q 195
+
Sbjct: 178 R 178
>gi|72393537|ref|XP_847569.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62175081|gb|AAX69230.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70803599|gb|AAZ13503.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC C +L + + L+
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKTCGALLLNTREQDVHKKLQH 129
Query: 128 RHPKSRLEQIL----CACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
+RL Q+ C+ E G D D G G P R GCGA QP
Sbjct: 130 MTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATR--GCGASQPR 187
Query: 181 LT 182
++
Sbjct: 188 VS 189
>gi|378756428|gb|EHY66452.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida sp. 1
ERTm2]
Length = 1609
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 19/212 (8%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + +V ++F ILSP++I MSV +I+H +T E G+P GGL DLRLGT ++ F C
Sbjct: 3 SDISIRRVESIEFGILSPEDIIAMSVCKIEHPETMESGVPKEGGLVDLRLGTSERGFLCS 62
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC C GHFG++ELAKP+FHIG++ + ++ VCF CSK+ ++
Sbjct: 63 TCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSSLPSPKPRTQ 122
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
+ K RL I K + C G +V+S + + P ++GC QPT+ +G++
Sbjct: 123 KERKRRLNYIWNLAKNRAICMG----EVVS----NEDNPEETLRTGCENRQPTIRKEGLH 174
Query: 188 MIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++A K + E E K L+AE+
Sbjct: 175 LLAFQKGE-----------ESSEGKTMLSAEK 195
>gi|328709688|ref|XP_003244040.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 382
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETC 69
+ V+ VQF ILS DE R+MSVTE I +T E G P GGL D R G ID+ +C+TC
Sbjct: 10 IRTVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRVSRCQTC 69
Query: 70 SSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
+ NM EC GHFGH+ELAKP+FHIGF+ +TI+RCVCF CSK+L
Sbjct: 70 AGNMTECCGHFGHIELAKPVFHIGFLTKAITILRCVCFYCSKLLVS 115
>gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|261327848|emb|CBH10825.1| RNA polymerase IIA largest subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 1765
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC C +L + + L+
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQH 129
Query: 128 RHPKSRLEQIL----CACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
+RL Q+ C+ E G D D G G P R GCGA QP
Sbjct: 130 MTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATR--GCGASQPR 187
Query: 181 LT 182
++
Sbjct: 188 VS 189
>gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit [Trypanosoma brucei]
Length = 1765
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC C +L + + L+
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQH 129
Query: 128 RHPKSRLEQIL----CACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
+RL Q+ C+ E G D D G G P R GCGA QP
Sbjct: 130 MTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATR--GCGASQPR 187
Query: 181 LT 182
++
Sbjct: 188 VS 189
>gi|22002086|gb|AAK97604.2|AF372503_1 RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG+++LA+P+F+IG +L +++CVC +C +L D D + L+
Sbjct: 70 TCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQH 129
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
+RL Q++ C K + +S EE + R GCGA QP +
Sbjct: 130 LTGVNRLRQVVKMCGMKCR---------MSTDATTPEEAVVAR--GCGATQPRI 172
>gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG+++LA+P+F+IG +L +++CVC +C +L D D + L+
Sbjct: 70 TCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQH 129
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
+RL Q++ C K + +S EE + R GCGA QP +
Sbjct: 130 LTGVNRLRQVVKMCGMKCR---------MSTDATTPEEAVVAR--GCGATQPRI 172
>gi|71423780|ref|XP_812569.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70877365|gb|EAN90718.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
Length = 1731
Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG+++LA+P+F+IG +L +++CVC +C +L D D + L+
Sbjct: 70 TCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQH 129
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
+RL Q++ C K + +S EE + R GCGA QP +
Sbjct: 130 LTGVNRLRQVVKMCGMKCR---------MSTDATTPEEAVVAR--GCGATQPRI 172
>gi|145408653|gb|ABP68347.1| ribosomal polymerase B1 [Beauveria bassiana]
Length = 119
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDK 62
F S + V +QF +LSP+EI+ MSV I + +T E + P GGL+D LG+ID+
Sbjct: 6 FPHSSAPLKTVEEIQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
+FKC+TCS M ECPGHFGH+ELAKP++H GF+K + ++ VC NCSK+LADE
Sbjct: 66 QFKCKTCSQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADE 119
>gi|261330838|emb|CBH13823.1| RNA polymerase IIA largest subunit, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 948
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC C +L + + L+
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQH 129
Query: 128 RHPKSRLEQIL----CACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
+RL Q+ C+ E G D D G G P R GCGA QP
Sbjct: 130 MTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATR--GCGASQPR 187
Query: 181 LT 182
++
Sbjct: 188 VS 189
>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
Length = 1452
Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/128 (43%), Positives = 83/128 (64%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
K+ +QFSILSPDEI+K SV ++ +E +P GGL D RLG I++ + CET ++
Sbjct: 6 KINSIQFSILSPDEIKKYSVVNVETDLISEENLPKKGGLMDTRLGVIEQGYYCETDMASH 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
ECPGHFGH+ L KP+FH GF++ +L I+RC+ SK++ ++ + K +KI++P R
Sbjct: 66 IECPGHFGHINLQKPIFHEGFIEFVLLIIRCIDHMSSKLIFNQNSQRVKNVMKIKNPYQR 125
Query: 134 LEQILCAC 141
L I C
Sbjct: 126 LINIAKLC 133
>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
Length = 1464
Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
KV+ +QFSILSP EIR SV I+ + E P GGL D RLG +DK C + ++
Sbjct: 11 KVKYIQFSILSPQEIRNYSVACIESDLSFENNSPKTGGLMDPRLGAVDKDIYCTSDMNSF 70
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
+CPG+FGHLELAKP+FH FM +L I+RC+ + SK++ + + K K LK+R+PK R
Sbjct: 71 VDCPGYFGHLELAKPVFHESFMNLVLLILRCIDHSTSKLILNSKSQKVKNILKVRNPKQR 130
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
L + C + N + + EE L QP + DG +IA++
Sbjct: 131 LSILSKLCSSLNSSKTEKNVSNDDFF----EENL--------TFQPKYSRDGWCIIAKF 177
>gi|342180836|emb|CCC90312.1| putative RNA polymerase IIA largest subunit [Trypanosoma congolense
IL3000]
Length = 1756
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/181 (37%), Positives = 97/181 (53%), Gaps = 6/181 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SHMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGKPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC +C +L + D L
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKSCGALLLNTRADDVHKKLHN 129
Query: 128 RHPKSRLEQILCACKTKNKC------EGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
SRL Q +TK + E GD+ G G + GCGA QP +
Sbjct: 130 LTGLSRLRQAAKMAETKCRMSTDLEDEVGDDGLNGGSFGGGGAVTGARATRGCGASQPRV 189
Query: 182 T 182
+
Sbjct: 190 S 190
>gi|38091170|emb|CAE46439.1| RNA polymerase II largest subunit [Cercomonas sp. ATCC 50318]
Length = 417
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 90/145 (62%), Gaps = 9/145 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGHLELAKP+ HI F+ T+L ++RCVC++CS +L ++ ++ K+R PK RL
Sbjct: 1 ECPGHFGHLELAKPIIHISFLPTILKLLRCVCYHCSALLVSRDNRRYADTQKLRQPKKRL 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+L C++ +C GG E+D SLL D +E RK+++GCG+ P DG+ +I E+
Sbjct: 61 AAVLEICRSAKECNGGFEMDD-SLLD-DNKEAERKKRTGCGSTLPNYRRDGIKIIVEFP- 117
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
D Q V+RK+ L+ +
Sbjct: 118 ------DNVQFDGSVDRKKFLSPSK 136
>gi|71402352|ref|XP_804100.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70866886|gb|EAN82249.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 11/174 (6%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG+++LA+P+F+IG +L +++CVC +C +L D D + L+
Sbjct: 70 TCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQH 129
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
+RL Q++ C K + +S EE + R GCGA QP +
Sbjct: 130 LTGVNRLRQVVKMCGMKCR---------MSTDATTPEEAVVAR--GCGATQPRI 172
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 29/182 (15%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+V+ +QF + SP+EIR SV I + +T E G+P GL DLR+GT ++ + C TC+ +
Sbjct: 10 RVKAIQFGLFSPEEIRASSVALIRYPETLENGVPKESGLIDLRMGTTERDYLCATCNQDN 69
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
C GHFGH+EL KPMFH+GF+ + ++ CVCF CSK+ ++ + K +
Sbjct: 70 YVCAGHFGHIELVKPMFHVGFISRIKKVLECVCFYCSKVRINKNKTTIT-----KESKHK 124
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L I CK K CE C QP + +G+++ A K
Sbjct: 125 LNFIWGICKNKMVCE------------------------DCNNRQPVIKKEGLSLFAYMK 160
Query: 194 AQ 195
+
Sbjct: 161 GE 162
>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 757
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 89/146 (60%), Gaps = 10/146 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FHIGF+ T+L I+RCVC++CSK+L D + F+ ALKIR+ K RL
Sbjct: 1 ECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIRNQKHRL 60
Query: 135 EQILCACKTKNKCE-GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
++ CK K C GG+E + L D E + GCG + P +T + + +I E+K
Sbjct: 61 NAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVEFK 120
Query: 194 AQRKKNDDQGQLPEPVERKQTLTAER 219
+ +E+K L+AER
Sbjct: 121 DVTDGS---------IEKKSVLSAER 137
>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus
heterostrophus C5]
Length = 1737
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF +LSP+EI+ MSV I + +T ++ P GL+D +LGTID+ + C TC +
Sbjct: 16 IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYSCATCKED 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+ CPGHFGH+EL P+FH+GF+ + ++ VC C I AD ++ A + + K
Sbjct: 76 IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFNHPDWQAAARTKDAKK 135
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP-TLTIDGMNMIAE 191
R ++I +TKN C + + G + + P + GCG+ QP T+ +G+ +
Sbjct: 136 RFDKIWRMSRTKNVC-----VQDVEESGKENKIP-KIPHGGCGSRQPDTIRKEGLKLTGT 189
Query: 192 YK 193
+K
Sbjct: 190 WK 191
>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus
ND90Pr]
Length = 1737
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF +LSP+EI+ MSV I + +T ++ P GL+D +LGTID+ + C TC +
Sbjct: 16 IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYSCATCKED 75
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+ CPGHFGH+EL P+FH+GF+ + ++ VC C I AD ++ A + + K
Sbjct: 76 IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFNHPDWQAAARTKDAKK 135
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP-TLTIDGMNMIAE 191
R ++I +TKN C + + G + + P + GCG+ QP T+ +G+ +
Sbjct: 136 RFDKIWRMSRTKNVC-----VQDVEESGKENKIP-KIPHGGCGSRQPDTIRKEGLKLTGT 189
Query: 192 YK 193
+K
Sbjct: 190 WK 191
>gi|375083052|ref|ZP_09730090.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
gi|374742288|gb|EHR78688.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
Length = 905
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T +E G P+ GGL D RLG ID +CETC +N EC
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYSEDGYPIDGGLMDRRLGVIDPNLRCETCGANYKEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHPK 131
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ + +
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIRLTDEEIEEYMTKFSVNEAR 126
>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
Length = 1014
Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 12/146 (8%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGHLELAKP+ H+ F+ T+L ++RCVC++CS + ++ +F A ++++PK RL
Sbjct: 1 CPGHFGHLELAKPVIHVSFLPTILKLLRCVCYHCSALXVSRDNRRFLEAARVKNPKKRLN 60
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPL--RKRKSGCGALQPTLTIDGMNMIAEYK 193
+L C+T C GG E+D + DGE P +K+++GCG+ PT DG+ +I E+
Sbjct: 61 AMLEVCRTAKDCGGGLELDPV-----DGERPAEEKKKRTGCGSTLPTYRRDGIKIIVEFP 115
Query: 194 AQRKKNDDQGQLPEPVERKQTLTAER 219
A + +D G V+RK+ L+ ++
Sbjct: 116 AN-TEFEDAGS----VDRKKNLSPQK 136
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 92/150 (61%), Gaps = 21/150 (14%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGHLELAKP+F+IGF+ T+L I+R VCF+CSK+L DE A ++++ K R
Sbjct: 1 ECPGHFGHLELAKPVFNIGFLTTVLKILRSVCFHCSKLLVDE-------AQELKNVKHRF 53
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEP-----LRKRKSGCGALQPTLTIDGMNMI 189
++ KTK CEGG++ G D +P ++K GCG QP +T DGM ++
Sbjct: 54 ARVYTLAKTKTICEGGEDTGTDKEQG-DSTDPKEKKEVKKSHGGCGNFQPKITKDGMKIM 112
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+K + G P VE+KQ LTAE+
Sbjct: 113 AEFK-------NVGDDPN-VEKKQLLTAEK 134
>gi|321468705|gb|EFX79689.1| hypothetical protein DAPPUDRAFT_244676 [Daphnia pulex]
Length = 392
Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 98/182 (53%), Gaps = 25/182 (13%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
V+ VQF ILSPDEI + SVTE I H + E G GGL D R G I++ +C TC
Sbjct: 46 VKRVQFGILSPDEIERQSVTEGGIIHPEIYDEGGKRKLGGLMDPRQGVINRSARCTTCKR 105
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPK 131
++ ECPGHFGH++LAKP++HIGF+ + I+RCV N I K L + P+
Sbjct: 106 SINECPGHFGHIDLAKPVYHIGFLMKTIKILRCVSPNNPSI-------KKILVISKGQPR 158
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CK N C EID+ GH GCG QP + G+ +I E
Sbjct: 159 TRMAHVHDLCKGINIC----EIDI-ETTGH----------VGCGRYQPKIRRQGLELIGE 203
Query: 192 YK 193
+K
Sbjct: 204 WK 205
>gi|409095098|ref|ZP_11215122.1| DNA-directed RNA polymerase subunit A' [Thermococcus zilligii AN1]
Length = 907
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T E G P+ GGL D RLG ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGAKAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+L ++ C C +I L DEE + +
Sbjct: 71 PGHFGHIELARPVVHVGFAKTILRVLESTCRECGRIKLTDEEIEGY 116
>gi|242398380|ref|YP_002993804.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
gi|242264773|gb|ACS89455.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
Length = 905
Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats.
Identities = 60/132 (45%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F +LSP EIRKMS EI T +E G P+ GGL D RLG ID +CETC +N EC
Sbjct: 11 IEFGVLSPQEIRKMSAAEITVPDTYSEDGYPIDGGLMDRRLGVIDPNLRCETCGANYKEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHP-KSRL 134
PGHFGH+ELA+P+ H+GF KT+ + C C +I L DEE + + L I KS +
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIYRTLESTCRECGRIKLTDEEIEDYFGKLNINEARKSEI 130
Query: 135 EQILCACKTKNK 146
+ ++ K K
Sbjct: 131 DALISEIHKKAK 142
>gi|342183052|emb|CCC92532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1754
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 97/185 (52%), Gaps = 14/185 (7%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SHMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGKPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC +C +L + D L
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKSCGALLLNTRADDVHKKLHN 129
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDG----------EEPLRKRKSGCGAL 177
SRL Q +TK + D+ +G DG + GCGA
Sbjct: 130 LTGLSRLRQAAKMAETKCRM----STDLEDEVGDDGLNGGSFGGGGAVAGARAARGCGAS 185
Query: 178 QPTLT 182
QP ++
Sbjct: 186 QPRVS 190
>gi|296109331|ref|YP_003616280.1| DNA-directed RNA polymerase subunit A' [methanocaldococcus infernus
ME]
gi|295434145|gb|ADG13316.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus infernus
ME]
Length = 886
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F ILSPD IRKMSV +I T E G P+ GGL D RLG ID +C+TC
Sbjct: 6 ELKEIMFGILSPDYIRKMSVAKIVTPDTYDEDGYPIEGGLMDPRLGVIDPGLRCKTCGGR 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
+GECPGHFGH+ELAKP+ H+GF KT+ I++ VC +C +IL E
Sbjct: 66 IGECPGHFGHIELAKPIIHVGFAKTIYKILKAVCPHCGRILIPE 109
>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
mesostigmatica CCMP1168]
Length = 1473
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/124 (46%), Positives = 81/124 (65%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
K+ +QFSILSP+EIR SV +I++ T + +P GGL D RLG +D+ C T +
Sbjct: 10 KIDYIQFSILSPEEIRIYSVAKIENDFTYQNSIPKMGGLMDPRLGAVDQNICCTTDMNEF 69
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
ECPG+FGHLELAKP+FH FM +L I+RCV S+++ + + K K LKIR+P+ R
Sbjct: 70 IECPGYFGHLELAKPVFHESFMDFVLMILRCVDHVTSRLIFNCDSPKVKNILKIRNPRQR 129
Query: 134 LEQI 137
L +
Sbjct: 130 LSML 133
>gi|435852040|ref|YP_007313626.1| DNA-directed RNA polymerase subunit A' [Methanomethylovorans
hollandica DSM 15978]
gi|433662670|gb|AGB50096.1| DNA-directed RNA polymerase subunit A' [Methanomethylovorans
hollandica DSM 15978]
Length = 880
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF ++SP E+RKMSVT I T + G P+ GL DLRLG ID KC+TCSS
Sbjct: 10 RISAIQFGLISPREVRKMSVTNIITADTYDDDGYPIDMGLMDLRLGVIDPGLKCKTCSSR 69
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
GECPGHFGH+EL P+ H+GF KT+ +R +C NCS +L + K
Sbjct: 70 AGECPGHFGHIELVAPVVHVGFNKTIRKALRSICRNCSALLLEPSQKK 117
>gi|401016|sp|P31813.1|RPOA1_THECE RecName: Full=DNA-directed RNA polymerase subunit A'
gi|48141|emb|CAA47723.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 905
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 60/123 (48%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ILSP EIRKMS EI T E G P+ GGL D RLG ID +CETC + GEC
Sbjct: 11 IDFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDD----KFKLALKIRHPK 131
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE + KF++ + K
Sbjct: 71 PGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHKFEVTGNRKKAK 130
Query: 132 SRL 134
RL
Sbjct: 131 DRL 133
>gi|397652056|ref|YP_006492637.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
gi|393189647|gb|AFN04345.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
Length = 910
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC GEC
Sbjct: 11 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGGRAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI-RHPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ +++ R+ +S
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIELARNRRSEF 130
Query: 135 EQILCACKTKNK 146
+I+ K K
Sbjct: 131 NEIIKEIHKKAK 142
>gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM
3638]
gi|18893705|gb|AAL81687.1| DNA-directed RNA polymerase subunit a' [Pyrococcus furiosus DSM
3638]
Length = 907
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC GEC
Sbjct: 8 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGGRAGEC 67
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI-RHPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ +++ R+ +S
Sbjct: 68 PGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIELARNRRSEF 127
Query: 135 EQILCACKTKNK 146
+I+ K K
Sbjct: 128 NEIIKEIHKKAK 139
>gi|315230006|ref|YP_004070442.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
gi|315183034|gb|ADT83219.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
Length = 906
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T + G P+ GGL D RLG ID +CETC + G+C
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARYGDC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEY 116
>gi|158427122|gb|ABW38176.1| RNA polymerase II largest subunit, partial [Botryosphaeria
dothidea]
Length = 372
Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+EL P+FH GF+ + ++ CVC NC KILADE + +FK AL++R PK R
Sbjct: 1 ECPGHFGHIELHTPVFHAGFINKIKKLLECVCHNCGKILADESEQQFKDALRLRDPKKRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
E I CK K C+ D ++P + + GCG QP L DG+ ++ +K
Sbjct: 61 EAIWKVCKPKAVCQMDQPSDDYDAGAQKNKKP-QIQHGGCGNRQPELRKDGLKLVGTWKP 119
Query: 195 QRKKNDDQGQLPE 207
Q+ +++++ + PE
Sbjct: 120 QKGEDEEEARQPE 132
>gi|212223364|ref|YP_002306600.1| DNA-directed RNA polymerase subunit A' [Thermococcus onnurineus
NA1]
gi|212008321|gb|ACJ15703.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 905
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T + G P+ GGL D RLG ID +CETC + G+C
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGDC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE D++
Sbjct: 71 PGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTDEEIDEY 116
>gi|410670214|ref|YP_006922585.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
gi|409169342|gb|AFV23217.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
Length = 880
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F +LSP E+RKMSVT I T + G P+ GL DLRLG ID KC+TC S
Sbjct: 10 RIGAIKFGLLSPREVRKMSVTSIVTADTYDDDGYPIDMGLMDLRLGVIDPGLKCKTCGSR 69
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
GECPGHFGH+EL P+ H+GF KT+ +R +C NCS++L + + LA
Sbjct: 70 AGECPGHFGHIELVAPVIHVGFNKTIRKALRSICHNCSRLLLTADQKRNFLA 121
>gi|240103982|ref|YP_002960291.1| DNA-directed RNA polymerase subunit A' [Thermococcus gammatolerans
EJ3]
gi|239911536|gb|ACS34427.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Thermococcus
gammatolerans EJ3]
Length = 905
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T + G P+ GGL D RLG ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE +++
Sbjct: 71 PGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEY 116
>gi|57641017|ref|YP_183495.1| DNA-directed RNA polymerase subunit A' [Thermococcus kodakarensis
KOD1]
gi|57159341|dbj|BAD85271.1| DNA-directed RNA polymerase, subunit A' [Thermococcus kodakarensis
KOD1]
Length = 906
Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T + G P+ GGL D RLG ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE +++
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEY 116
>gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit A' [Pyrococcus horikoshii OT3]
gi|3257973|dbj|BAA30656.1| 907aa long hypothetical DNA-directed RNA polymerase subunit A'
[Pyrococcus horikoshii OT3]
Length = 907
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 56/124 (45%), Positives = 82/124 (66%), Gaps = 3/124 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAKAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI-RHPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ L++ ++ +S +
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLELAKNRRSEV 130
Query: 135 EQIL 138
+IL
Sbjct: 131 NKIL 134
>gi|343476494|emb|CCD12425.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 279
Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 6/181 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S ++ KV VQF I +I+ +V ++H K+ ERG P+ GG++DLR+GT D F CE
Sbjct: 10 SHMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGKPVRGGINDLRMGTTDFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+IG +L +++CVC +C +L + D L
Sbjct: 70 TCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKSCGALLLNTRADDVHKKLHN 129
Query: 128 RHPKSRLEQIL------CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL 181
SRL Q C T + E GD G G + GCGA QP +
Sbjct: 130 LTGLSRLRQAAKMAETKCRMSTDLEDEVGDGGLNGGSFGGGGAVTGARATRGCGASQPRV 189
Query: 182 T 182
+
Sbjct: 190 S 190
>gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase subunit A' [Pyrococcus abyssi GE5]
gi|5458047|emb|CAB49537.1| rpoA1 DNA-directed RNA polymerase, subunit A' [Pyrococcus abyssi
GE5]
gi|380741373|tpe|CCE70007.1| TPA: DNA-directed RNA polymerase subunit alpha [Pyrococcus abyssi
GE5]
Length = 907
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAKAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI-RHPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ L++ ++ +S +
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLELAKNRRSEV 130
Query: 135 EQILCACKTKNK 146
+IL K +
Sbjct: 131 NKILKEIHKKAR 142
>gi|294495210|ref|YP_003541703.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
gi|292666209|gb|ADE36058.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
Length = 886
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGT 59
M+N P ++ +R F +LSP EIRKMSVT I T + G P+ GL DLRLG
Sbjct: 6 MDNTIPSIPQRIGAIR---FGLLSPREIRKMSVTSIITADTYDDDGYPIDMGLMDLRLGV 62
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
ID KC+TC GECPGHFGH+EL P+ H+GF K + I+R C NCS +L +++
Sbjct: 63 IDPGLKCKTCGGRAGECPGHFGHIELVAPVLHVGFNKIIRKILRSTCRNCSHLLLEDKQK 122
Query: 120 K 120
K
Sbjct: 123 K 123
>gi|326634531|pdb|3QQC|A Chain A, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP
CLAMP DOMAIN
Length = 436
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 3/132 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC GEC
Sbjct: 72 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGGRAGEC 131
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI-RHPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ +++ R+ +S
Sbjct: 132 PGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIELARNRRSEF 191
Query: 135 EQILCACKTKNK 146
+I+ K K
Sbjct: 192 NEIIKEIHKKAK 203
>gi|332157774|ref|YP_004423053.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
gi|331033237|gb|AEC51049.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
Length = 906
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAKAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI-RHPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ L++ ++ +S +
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLELAKNRRSEV 130
Query: 135 EQILCACKTKNK 146
+IL K +
Sbjct: 131 NKILKEIHKKAR 142
>gi|389852852|ref|YP_006355086.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
gi|388250158|gb|AFK23011.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
Length = 907
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/124 (44%), Positives = 82/124 (66%), Gaps = 3/124 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI-RHPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE +++ L++ ++ +S +
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMKKLELAKNRRSEV 130
Query: 135 EQIL 138
+IL
Sbjct: 131 NKIL 134
>gi|223478217|ref|YP_002582841.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
gi|214033443|gb|EEB74270.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
Length = 905
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T + G P+ GGL D RLG ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE +++
Sbjct: 71 PGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEY 116
>gi|390960610|ref|YP_006424444.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
gi|390518918|gb|AFL94650.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
Length = 905
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T + G P+ GGL D RLG +D +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVVDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE +++
Sbjct: 71 PGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEY 116
>gi|337283878|ref|YP_004623352.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
gi|334899812|gb|AEH24080.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
Length = 907
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/124 (45%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS E+ T + G P+ GG+ D R+G ID +CETC + GEC
Sbjct: 11 IEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIR-HPKSRL 134
PGHFGH+ELA+P+ H+GF KT+ I+ C C +I L DEE +++ L++ + +S +
Sbjct: 71 PGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLELAGNRRSEV 130
Query: 135 EQIL 138
+IL
Sbjct: 131 NKIL 134
>gi|407852691|gb|EKG06054.1| RNA polymerase IIA largest subunit, putative, partial [Trypanosoma
cruzi]
Length = 161
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ +V ++H K+ ERG+P+ GG++DLR+GT + F CE
Sbjct: 10 SQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGLPVRGGINDLRMGTTEFEFACE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG+++LA+P+F+IG +L +++CVC +C +L D D + L+
Sbjct: 70 TCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKKLQH 129
Query: 128 RHPKSRLEQILCACKTK 144
+RL Q++ C K
Sbjct: 130 LTGVNRLRQVVKMCGMK 146
>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
Length = 1015
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH GF+ + ++ VC NC KIL D+ + FK AL+IR PK R
Sbjct: 1 ECPGHFGHIELAVPVFHTGFISKIKKLLEMVCHNCGKILVDDSNPAFKDALRIRDPKKRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ I CKTK CE D S D ++ L GCG +QP + DG+ +I +KA
Sbjct: 61 DAIWRLCKTKMICETTIPQDDDS---KDLQKDLGPGHGGCGNVQPEVRKDGLKLIGTWKA 117
Query: 195 QRKKNDDQGQLPE 207
Q+ ++ + Q PE
Sbjct: 118 QKGDDETEAQQPE 130
>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
Length = 1014
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE F AL+ R PK R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDESTAAFADALRFRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ I CK K CE D SL D +EP + GCG +QP + +G+ + +KA
Sbjct: 61 DAIWRLCKPKMVCETMAVPDDDSL--KDSKEP-KHDHGGCGNIQPEVRREGLKLTGTWKA 117
Query: 195 QRKKNDDQGQLPE 207
Q+ +++GQ PE
Sbjct: 118 QKGDEENEGQHPE 130
>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
Length = 1020
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GF+ + ++ +C NC KI DE ++ FK AL+IR PK R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFITKIKKLLETICHNCGKIKVDESNEHFKDALRIRDPKKRF 60
Query: 135 EQILCACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+ I K K CE DE D S + R GCG +QP + DG+ +I
Sbjct: 61 DAIWRVSKPKGICEMDAPSDESDKDSAKDSPKSKQPRIPHGGCGNIQPEVRRDGLKLIGT 120
Query: 192 YKAQRKKNDDQGQLPE 207
+K Q+ ++++GQ PE
Sbjct: 121 WKPQKGDDENEGQQPE 136
>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
Length = 1027
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE + F AL+ R PK R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEHNPAFADALRYRDPKKRF 60
Query: 135 EQILCACKTKNKCE-----GGDEIDVLSLLGHDGEEPLRKRK-----SGCGALQPTLTID 184
+ I CK K CE +E D + G G++ R ++ GCG +QP + D
Sbjct: 61 DAIWRLCKPKLVCETLAAQDKEEEDSSTRTGKIGKQGGRDKEPAHDHGGCGNIQPEVRRD 120
Query: 185 GMNMIAEYKAQRKKNDDQGQLPE 207
G+ + +KAQ+ +++GQ PE
Sbjct: 121 GLKLTGSWKAQKGDEENEGQQPE 143
>gi|289193125|ref|YP_003459066.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus sp.
FS406-22]
gi|288939575|gb|ADC70330.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus sp.
FS406-22]
Length = 891
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSPD IRKMSV +I T E G P+ GGL D RLG ID C+TC +GEC
Sbjct: 15 IMFGLLSPDYIRKMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGGRIGEC 74
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+ELAKP+ HIGF KT+ I++ VC +C ++ E
Sbjct: 75 PGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISE 114
>gi|429964462|gb|ELA46460.1| hypothetical protein VCUG_02055 [Vavraia culicis 'floridensis']
Length = 1583
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 31/202 (15%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SP E+R SV IDH +T P GGL DLRLGT ++++ C TC+ +
Sbjct: 7 RIKSIQFGLFSPQELRASSVVRIDHPETLSNQAPKEGGLIDLRLGTTERQYLCATCAQSN 66
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
C GHFGH+EL +P+FH+G+M + ++ VCF CS+I A + + K A+ +
Sbjct: 67 LTCVGHFGHIELTRPVFHVGYMNKIKKLLETVCFYCSRIKAYDVYKEHKDAVL----RQG 122
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L CK K +C C + QP + DG+++IA K
Sbjct: 123 LSYFWGLCKGKTQC------------------------MHCQSKQPLIKRDGLSLIAFIK 158
Query: 194 AQRKKNDDQGQLPEPVERKQTL 215
+ ++ +G++ ER T+
Sbjct: 159 GE---DNTEGKVILNGERVHTV 177
>gi|385805645|ref|YP_005842043.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
Kam940]
gi|383795508|gb|AFH42591.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
Kam940]
Length = 882
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/119 (45%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K++ ++ S+LSPDEIR+MS +I +T + G+P+ GG+ D RLG I+ KC C +
Sbjct: 7 KIKGIKLSVLSPDEIRRMSKVQIITAETYDDDGLPIQGGVMDPRLGVIEPGQKCPVCGNT 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPK 131
M CPGHFGH+ELAKP+ HIG++K + ++R C+ C +IL EE+ K L L R K
Sbjct: 67 MQSCPGHFGHIELAKPVIHIGYVKEIYDLLRGTCWKCGRILLPEEEIKQYLDLMRRVEK 125
>gi|341581877|ref|YP_004762369.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
gi|340809535|gb|AEK72692.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
Length = 905
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++F ILSP EIRKMS EI T + G P+ GGL D RLG +D +CETC + G+C
Sbjct: 11 IEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVVDPGLRCETCGARAGDC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE +++
Sbjct: 71 PGHFGHVELARPIVHVGFAKTIHRVLESTCRECGRIKLTDEEIEEY 116
>gi|357289799|gb|AET73112.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 12T]
gi|357292599|gb|AET73935.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 14T]
Length = 1512
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 31/204 (15%)
Query: 11 KVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
K +K+ +QFS+LSP EI+K SV EI + T P+ GGL D R+G ++ F C T
Sbjct: 8 KPSKIIGIQFSLLSPHEIQKGSVAEIVNRDTYINNKPVLGGLFDPRMGILEPGFICPTDG 67
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+ + PG+FGH+ LA+P+F+I ++ T++ I+RCVC CSK+L D+ DK+ L +
Sbjct: 68 LDYIQTPGYFGHINLARPVFYIQYLTTIMKILRCVCIKCSKLLIDK--DKYSYLLNC-NS 124
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM-NMI 189
R ++ K +C GE K+GCG LQP L +G+ +I
Sbjct: 125 DERWNKVFALASKKKRC---------------GECC----KNGCGCLQPKLKKEGLATLI 165
Query: 190 AEYKAQRK--------KNDDQGQL 205
AE+ + + K+D G+L
Sbjct: 166 AEWNEKEEEIKNYEFSKDDGTGKL 189
>gi|332796431|ref|YP_004457931.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
gi|332694166|gb|AEE93633.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
Length = 880
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ V+F ILSPDEIRKMSVT I + E G P+ G + D RLG I+ +C TC + M
Sbjct: 6 IKGVKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGSVMDPRLGVIEPGQRCPTCGNMM 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
G CPGHFGH+EL KP+ H+GF+K + ++R C C +I L D+E ++++
Sbjct: 66 GNCPGHFGHIELVKPVIHVGFVKHIYDLLRATCRRCGRIKLEDQELERYR 115
>gi|256811204|ref|YP_003128573.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus fervens
AG86]
gi|256794404|gb|ACV25073.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus fervens
AG86]
Length = 891
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSPD IR+MSV +I T E G P+ GGL D RLG ID C+TC +GEC
Sbjct: 15 IMFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGGRIGEC 74
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+ELAKP+ HIGF KT+ I++ VC +C ++ E
Sbjct: 75 PGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISE 114
>gi|322510715|gb|ADX06029.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
1]
Length = 1464
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 72/198 (36%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+K+ +QFSILSP+EI + SV EI T P GGL D R+G +D C T N
Sbjct: 6 SKIIGIQFSILSPEEIVRNSVAEITSKDTYNGIKPKIGGLFDPRMGVLDPGMICPTDGEN 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
CPG+FGH+ LAKP+F+I + T+ I++CVCF CSK+L +ED L K
Sbjct: 66 YINCPGYFGHIVLAKPVFYIQYFSTISKILKCVCFKCSKLLISKEDYMNILNFKYNERWD 125
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN-MIAE 191
QI C +C GE K+GCG LQP + +G + ++AE
Sbjct: 126 AFFQI-CNNLKPRRC---------------GE----YTKNGCGCLQPKIKKEGYSTLMAE 165
Query: 192 YKAQRKKNDDQGQLPEPV 209
+ + K+ PE V
Sbjct: 166 WTNENKETMAIKYTPEMV 183
>gi|91773158|ref|YP_565850.1| DNA-directed RNA polymerase subunit A' [Methanococcoides burtonii
DSM 6242]
gi|91712173|gb|ABE52100.1| DNA-directed RNA polymerase subunit A' [Methanococcoides burtonii
DSM 6242]
Length = 883
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGT 59
M+N P ++ ++ F ++SP E+RKMSVT I T + G P+ GL DLRLG
Sbjct: 3 MDNMVPSIPKRIGAIK---FGLISPREVRKMSVTSIITADTYDDDGYPIDMGLMDLRLGV 59
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
ID KC++C S GECPGHFGH+EL P+ H+GF K L I+R VC CS +L +E
Sbjct: 60 IDPGLKCKSCGSRAGECPGHFGHIELVAPVIHVGFNKILRKILRSVCCKCSSLLLEE 116
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats.
Identities = 53/134 (39%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRF 64
T S +V K ++F +L DEI K SV I + + + M P G++D R+GT+D+
Sbjct: 9 THSYIEVKKPSAIEFCLLDQDEILKSSVVSIKNERIYDVNMIPAFEGVNDPRMGTMDRDR 68
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
C TC + +CPGHFGH+ELAKP++H G ++ + I++C+CF+C K+L E D
Sbjct: 69 LCFTCKGSQVDCPGHFGHIELAKPVYHRGCLEYIKKILKCLCFSCGKLLYPREKDHVDQI 128
Query: 125 LKIRHPKSRLEQIL 138
++I+ PK R QI+
Sbjct: 129 MRIKSPKHRFMQIM 142
>gi|113957446|gb|ABI49112.1| RNA polymerase II largest subunit [Lobaria scrobiculata]
Length = 384
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 76/138 (55%), Gaps = 13/138 (9%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE + F AL+ R PK R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNSAFADALRYRDPKRRF 60
Query: 135 EQILCACKTKNKCEGG-----DEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMI 189
+ I CKTK CE D +D HD GCG +QP + +GM +
Sbjct: 61 DAIWRLCKTKMVCETAAATEDDNMDKSKEPKHD--------HGGCGNVQPEVRREGMKLN 112
Query: 190 AEYKAQRKKNDDQGQLPE 207
+K Q+ +++GQ PE
Sbjct: 113 GTWKPQKGDEENEGQQPE 130
>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I + E G P+ GG+ D RLG I+ KC TC + +
Sbjct: 10 IKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCGNTL 69
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED----DKFKLALKIRH 129
CPGHFGH+EL +P+ H+GF+K + I+R C +C ++ EED + A+K R
Sbjct: 70 NGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSRIYHAIKDRW 129
Query: 130 PKS 132
P +
Sbjct: 130 PSA 132
>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 880
Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I + E G P+ GG+ D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED----DKFKLALKIRH 129
CPGHFGH+EL +P+ H+GF+K + I+R C +C ++ EED + A+K R
Sbjct: 66 NGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSRIYHAIKDRW 125
Query: 130 PKS 132
P +
Sbjct: 126 PSA 128
>gi|15669231|ref|NP_248036.1| DNA-directed RNA polymerase subunit alpha [Methanocaldococcus
jannaschii DSM 2661]
gi|3915860|sp|Q58445.2|RPOA1_METJA RecName: Full=DNA-directed RNA polymerase subunit A'; Contains:
RecName: Full=Mja rpoA1 intein; AltName: Full=Mja rpol
A' intein
gi|2826359|gb|AAB99046.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Methanocaldococcus
jannaschii DSM 2661]
Length = 1341
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSPD IR+MSV +I T E G P+ GGL D RLG ID C+TC +GEC
Sbjct: 13 IMFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGGRIGEC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
PGHFGH+ELAKP+ HIGF KT+ I++ VC +C ++ E K
Sbjct: 73 PGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRK 116
>gi|2127864|pir||A64430 DNA-directed RNA polymerase (EC 2.7.7.6) subunit A'
(intein-containing) - Methanococcus jannaschii
Length = 1345
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSPD IR+MSV +I T E G P+ GGL D RLG ID C+TC +GEC
Sbjct: 17 IMFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGGRIGEC 76
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
PGHFGH+ELAKP+ HIGF KT+ I++ VC +C ++ E K
Sbjct: 77 PGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRK 120
>gi|169247252|gb|ACA51517.1| RNA polymerase II largest subunit, partial [Saturnispora zaruensis]
Length = 231
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 80/137 (58%), Gaps = 12/137 (8%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALKIRHPKSRLEQ 136
GHFGH+ELAKP+FHIGFM + CVC NC K+L DE + +F A+KIR PK R
Sbjct: 1 GHFGHIELAKPVFHIGFMAKIKKACECVCMNCGKLLVDEFTNPQFAQAIKIRDPKKRFNA 60
Query: 137 ILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQR 196
+ CKTK CE ID D +EP + R+ GCG+ QPT+ DG+ + +K R
Sbjct: 61 VWTICKTKMVCEVDQPID------EDSDEP-QHRRGGCGSTQPTVRKDGLKLWGTWK--R 111
Query: 197 KKNDDQGQLPEPVERKQ 213
DD G E +ERKQ
Sbjct: 112 AHADDDGL--ENLERKQ 126
>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
Length = 2270
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
++ VQF + SP +I++ SV + H +T E GMP GLSD R+G ID + C TC+ N
Sbjct: 14 IKSVQFGLFSPVKIKQHSVLHVQHPETLENGMPKESGLSDPRMGVIDNQLLCSTCNLNCM 73
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
EC GHFGH+EL KP+FH+ F+ + ++ VCF CS I + D++
Sbjct: 74 ECQGHFGHIELCKPVFHVNFLNRIKKVLETVCFYCSSIKNSKTDNE 119
>gi|440494147|gb|ELQ76552.1| RNA polymerase II, large subunit, partial [Trachipleistophora
hominis]
Length = 1748
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 38/213 (17%)
Query: 7 FSPFKV----AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDK 62
F P K+ +++ +QF + SP E+R SV IDH +T P GGL DLRLGT ++
Sbjct: 12 FLPLKMQLQKKRIKSIQFGLFSPQELRASSVVRIDHPETLSNQAPKEGGLIDLRLGTTER 71
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
++ C TC + C GHFGH+EL +P+FH+G+M + ++ VCF CS+I A D K
Sbjct: 72 QYLCATCGQSNLTCVGHFGHIELTRPVFHVGYMNKIKKLLETVCFYCSRIKA---YDVHK 128
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
+ + L CK K +C C + QP +
Sbjct: 129 EGVH----RQGLSYFWGLCKGKTQC------------------------MHCQSKQPLIK 160
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTL 215
DG+++IA R +++ +G++ ER T+
Sbjct: 161 RDGLSLIAFI---RGEDNTEGKVILNGERVHTV 190
>gi|310914373|emb|CBH31022.1| RNA polymerase II largest subunit, partial [Millerozyma farinosa]
Length = 192
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGH+ELAKP+FHIGF+ + + C+C +C K+L DE + A+KIR PK R
Sbjct: 2 CPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAMAQAIKIRDPKKRFN 61
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
+ CK+K CE DVLS P+ + + GCG QPT+ DG+ + +K
Sbjct: 62 AVWSLCKSKMICEA----DVLSNENDPNSPPVTQGRGGCGHTQPTIRRDGLKLWGTWK-- 115
Query: 196 RKKNDDQGQLPE 207
+ KN ++ + PE
Sbjct: 116 QNKNFEENEQPE 127
>gi|38091164|emb|CAE46436.1| RNA polymerase II largest subunit [Haynesina germanica]
Length = 414
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 72/106 (67%), Gaps = 7/106 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL-ADEEDDKFKLALKIRHPKSR 133
ECPGHFGH+ELA+P +H+GF+ L ++RCVC++CS++L AD+ D FK ALK +P+ R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLSITLRVLRCVCYHCSRLLCADQNSDAFKNALKNENPRER 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
L +I+ C+ K C GD++D DGE+ K SGCG +QP
Sbjct: 61 LVEIVHLCEKKKYCGSGDKVD------DDGEDKQEKVNSGCGNMQP 100
>gi|261403645|ref|YP_003247869.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus
vulcanius M7]
gi|261370638|gb|ACX73387.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus
vulcanius M7]
Length = 1343
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 20 FSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPG 78
F +LSPD IR+MSV +I T E G P+ GGL D RLG ID C+TC +GECPG
Sbjct: 17 FGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDPRLGVIDPGLVCKTCGGRIGECPG 76
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
HFGH+ELAKP+ HIGF KT+ I++ VC +C ++ E
Sbjct: 77 HFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISE 114
>gi|356472421|gb|AET10295.1| RNA polymerase II largest subunit [Ogataea polymorpha]
Length = 229
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 80/141 (56%), Gaps = 13/141 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGF+ + + CVC NC KIL DE + +F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFVSRIKKVCECVCMNCGKILLDEATNPQFAAAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE +D DG ++ + GCGA QPT+ DG+ + +K +
Sbjct: 61 WSLCKTKMVCEVDQPVD-------DGSGRVQHLRGGCGASQPTIRRDGLKLWGSWK--KS 111
Query: 198 KNDDQGQLPEPVERKQTLTAE 218
+DD G E ER+Q AE
Sbjct: 112 NSDDDG---EQAERRQISAAE 129
>gi|11499472|ref|NP_070713.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus fulgidus DSM
4304]
gi|2648656|gb|AAB89365.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Archaeoglobus
fulgidus DSM 4304]
Length = 867
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 9/151 (5%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F +LSP EIR+MSV +I +T + G P+ GGL D RLG ID +C+TC
Sbjct: 5 RISAIKFEVLSPQEIRRMSVVKIITPETYDDDGFPIDGGLMDTRLGVIDPGLRCKTCGGK 64
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHPK 131
GECPGHFGH+ELA P+ H+G+ K + ++ C C +I L DE DKF ++ R
Sbjct: 65 AGECPGHFGHVELAAPVIHVGYAKMIARLLNGTCSECGRILLKDERRDKFIAEIERRKEL 124
Query: 132 SR-----LEQILCACKTKNKCE--GGDEIDV 155
++ ++++ K KC G ++++V
Sbjct: 125 NQSYEEVVKEVFRLTKAAKKCPHCGAEQLEV 155
>gi|147921534|ref|YP_684650.1| DNA-directed RNA polymerase subunit A' [Methanocella arvoryzae
MRE50]
gi|110620046|emb|CAJ35324.1| DNA-directed RNA polymerase, subunit A1 [Methanocella arvoryzae
MRE50]
Length = 877
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP ++ K+R F +LSP EIRKMSVT+I T + G P+ GL D RLG ID +C
Sbjct: 3 SPKRIKKIR---FGLLSPAEIRKMSVTKIITADTYDDDGYPIDMGLMDPRLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
TC GECPGHFGH+ELA P+ H+GF + L ++R C C ++L DE+
Sbjct: 60 RTCGGRPGECPGHFGHIELAAPVIHVGFARLLRKVLRTTCRKCGRLLMDEK 110
>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
Length = 886
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/123 (44%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
V+ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC C + +
Sbjct: 12 VKGIRFGILSPDEIRKMSVTAIITADVYDEDGTPIEGSVMDSRLGIIEPGQKCPVCGNVI 71
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED----DKFKLALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++R C C +I +EED K A+K R
Sbjct: 72 GSCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCKRCGRIKINEEDIQKYKKIHDAIKKRW 131
Query: 130 PKS 132
P +
Sbjct: 132 PSA 134
>gi|310831358|ref|YP_003970001.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386542|gb|ADO67402.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 1493
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 6/141 (4%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTE-----IDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+++++ ++FSILS +E ++MS I+ K+ + P GGL DLRLGT D C
Sbjct: 11 ISRIKEIEFSILSNEETKRMSSVRKDPFGINLAKSYNKYEPQKGGLVDLRLGTSDPYLNC 70
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC NM CPGHFGH EL FH GF+ L TI++C C CS IL + D+ ++ LK
Sbjct: 71 NTCGLNMENCPGHFGHHELPDYFFHFGFLNHLTTILQCTCLKCSNILIENVDEYYE-KLK 129
Query: 127 IRHPKSRLEQILCACKTKNKC 147
+ RL +I K + C
Sbjct: 130 NKKGTHRLVEIKEKAKKASYC 150
>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
Length = 1828
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 74/123 (60%), Gaps = 10/123 (8%)
Query: 4 CFTFSPFKVAKVRMVQFSILSPDEIRKMSVTE----IDHGKT----TERGMPMAGGLSDL 55
C T +P + ++R + F ILSPDE+ K SVT D+G T + G P+ GGL+D
Sbjct: 5 CGTVAPLR--RIRSIDFGILSPDEVVKNSVTTGIGGEDNGITRVEISANGKPVKGGLNDP 62
Query: 56 RLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
R+GTI KCETC+ + +CPGHFGH+ L +FH GF+ + ++ C+CFNC K L
Sbjct: 63 RMGTISSSGKCETCNRSYEDCPGHFGHIHLNAEIFHTGFLDIIYRVLTCICFNCGKCLVP 122
Query: 116 EED 118
D
Sbjct: 123 RGD 125
>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
haptosporus]
Length = 976
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 13/147 (8%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP++H+GF+ + I++CVCF CSK+ ADE + K+ A +I+ K+RL
Sbjct: 1 ECPGHFGHIELAKPVYHVGFIVKVKKILQCVCFFCSKLKADESNPKYSRARQIKDRKARL 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSL----LGHDGEEPLRKR-KSGCGALQPTLTIDGMNMI 189
+ + CK+K C+ +E D + + GE R+ GCG QP + G+ +I
Sbjct: 61 KAVWDVCKSKMICDNEEETDPATTNQEEVEESGEHTFRRNGHGGCGHRQPVIRKVGLRLI 120
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLT 216
AE+ KN +G +P E KQ LT
Sbjct: 121 AEF-----KNGIKGAMP---ESKQPLT 139
>gi|386875147|ref|ZP_10117336.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
gi|386807026|gb|EIJ66456.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
Length = 1263
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 10/139 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QFS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC + C
Sbjct: 12 IQFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTAARC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKLALKIRHP----- 130
PGHFGH+ELA+P+ HI F+ + +++ C +C+++ +ED D FK +K +H
Sbjct: 72 PGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLDAFK-KIKDKHAAYTVI 130
Query: 131 --KSRLEQILCACKTKNKC 147
K EQI+ K +C
Sbjct: 131 SQKRIPEQIIEKAKKAKEC 149
>gi|70606495|ref|YP_255365.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449066707|ref|YP_007433789.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449068981|ref|YP_007436062.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920763|sp|P11512.2|RPOA1_SULAC RecName: Full=DNA-directed RNA polymerase subunit A'
gi|68567143|gb|AAY80072.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449035215|gb|AGE70641.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449037489|gb|AGE72914.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
Length = 880
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 7/138 (5%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+R V+F +LSP+EIR+MSVT I + E G P+ GG+ D +LG I+ KC C + +
Sbjct: 6 IRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKL---ALKIRH 129
CPGHFGH+EL KP+ HIG++K + +R C+ C +I E+D +++K A+K+R
Sbjct: 66 AGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKLRW 125
Query: 130 PKS--RLEQILCACKTKN 145
P + RL + + KN
Sbjct: 126 PSAARRLVEYIKKISIKN 143
>gi|46670|emb|CAA32925.1| RNA polymerase subunit A (AA 1-880) [Sulfolobus acidocaldarius]
Length = 880
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 7/138 (5%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+R V+F +LSP+EIR+MSVT I + E G P+ GG+ D +LG I+ KC C + +
Sbjct: 6 IRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGEKCPVCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKL---ALKIRH 129
CPGHFGH+EL KP+ HIG++K + +R C+ C +I E+D +++K A+K+R
Sbjct: 66 AGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKLRW 125
Query: 130 PKS--RLEQILCACKTKN 145
P + RL + + KN
Sbjct: 126 PSAARRLVEYIKKISIKN 143
>gi|336476453|ref|YP_004615594.1| DNA-directed RNA polymerase subunit A' [Methanosalsum zhilinae DSM
4017]
gi|335929834|gb|AEH60375.1| DNA-directed RNA polymerase subunit A' [Methanosalsum zhilinae DSM
4017]
Length = 880
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F ++SP E+RKMS+T I T + G P+ GL DLRLG ID KC++C
Sbjct: 10 RIGAIKFGLISPREVRKMSITPIITADTYDDDGYPIDMGLMDLRLGVIDPGLKCKSCGGR 69
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL-----KI 127
GECPGHFGH+EL P+ HIGF KT+ I+R C CS++L + + LA +I
Sbjct: 70 AGECPGHFGHIELVAPVIHIGFNKTIRKILRSTCRKCSRLLLEFSKKEEYLAHLETLKEI 129
Query: 128 RH-PKSRLEQILCACKTKNKC 147
H P+S + +I + C
Sbjct: 130 GHLPESYINEIFKEARKSKTC 150
>gi|125657574|gb|ABN48850.1| RNA polymerase II largest subunit [Rossyatella sp. DL-2007]
Length = 427
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 19/155 (12%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL-ADEEDDKFKLALKIRHPKSR 133
ECPGHFGH+ELA+P +H+G++ L ++RCVCF+CS++L AD+ D FK ALKI +P+ R
Sbjct: 1 ECPGHFGHIELARPCYHVGWLPVTLRVLRCVCFHCSRLLCADQNSDAFKQALKIENPRDR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGE--------EPLRKRKSGCGALQPTLTI-D 184
L +IL C+ K C GD ID L G+ +P ++ SGCG QP
Sbjct: 61 LIEILRLCEKKKFCGTGDRIDGKDLAKGTGDGDVLMHNTDPSQRVSSGCGNAQPKYRKGT 120
Query: 185 GMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+ + E+ + +D RKQ L+A R
Sbjct: 121 GVKIEIEFPDRTDNGED---------RKQYLSARR 146
>gi|356472419|gb|AET10294.1| RNA polymerase II largest subunit [Ogataea parapolymorpha]
Length = 229
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 79/141 (56%), Gaps = 13/141 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGF+ + + CVC NC KIL DE + +F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFVSRIKKVCECVCMNCGKILLDEATNPQFAAAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE +D DG + + GCGA QPT+ DG+ + +K +
Sbjct: 61 WSLCKTKMVCEVDQPVD-------DGSGRTQHLRGGCGASQPTIRRDGLKLWGSWK--KS 111
Query: 198 KNDDQGQLPEPVERKQTLTAE 218
+DD G E ER+Q AE
Sbjct: 112 NSDDDG---EQAERRQISAAE 129
>gi|110669633|gb|ABG81911.1| RNA polymerase II largest subunit [Mycoblastus sanguinarius]
Length = 1016
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 14/139 (10%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE + F AL+ R PK R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFADALRYRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK------SGCGALQPTLTIDGMNM 188
+ + CK K CE + + D + P K K GCG +QP + +G+ +
Sbjct: 61 DAVWRLCKPKMICE--------TTMTLDEDAPSDKMKEPKHDHGGCGNIQPEVRREGLRL 112
Query: 189 IAEYKAQRKKNDDQGQLPE 207
+KAQ+ +++GQ PE
Sbjct: 113 NGTWKAQKGDEENEGQQPE 131
>gi|322511128|gb|ADX06441.1| putative DNA-dependent RNA polymerase II [Organic Lake
phycodnavirus 2]
Length = 1478
Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats.
Identities = 69/192 (35%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRFKCETCSS 71
+K+ +QFSILSPDEI + SV EI K T GM P GGL D R+G +D C T
Sbjct: 9 SKIIGIQFSILSPDEIVRNSVAEIT-SKDTYNGMKPKIGGLFDPRMGVLDPGMICPTDGQ 67
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPK 131
N +CPG+FGH+ LAKP+F+I + + I++C+CF CSK+L +E +K L H
Sbjct: 68 NYIQCPGYFGHIVLAKPVFYIQYFNVIQKILKCICFKCSKLLISKE--VYKYVLNYSH-N 124
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM-NMIA 190
R + C G+ ++GCG LQP + +G + A
Sbjct: 125 ERWDNFYQICNNLKPSRCGEHT-----------------QNGCGCLQPKIKKEGYCTLHA 167
Query: 191 EYKAQRKKNDDQ 202
E+ NDD+
Sbjct: 168 EW-----TNDDK 174
>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
Length = 1016
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 77/139 (55%), Gaps = 14/139 (10%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KI DE + KF AL+ R PK R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKIKLDESNPKFADALRFRDPKKRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK------SGCGALQPTLTIDGMNM 188
+ I CK K CE + + D + P K+K GCG +QP + +G+ +
Sbjct: 61 DAIWRHCKVKMVCE--------TTVALDEDAPPEKQKEPKHEHGGCGNVQPEIRREGLRL 112
Query: 189 IAEYKAQRKKNDDQGQLPE 207
+K Q+ + +GQ PE
Sbjct: 113 TGTWKPQKGDEETEGQQPE 131
>gi|169247254|gb|ACA51518.1| RNA polymerase II largest subunit, partial [Saturnispora zaruensis]
Length = 230
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 79/136 (58%), Gaps = 12/136 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGFM + CVC NC K+L DE + +F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFMAKIKKACECVCMNCGKLLVDEFTNPQFAQAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE ID D +EP + R+ GCG+ QPT+ DG+ + +K R
Sbjct: 61 WTICKTKMVCEVDQPID------EDSDEP-QHRRGGCGSTQPTVRKDGLKLWGTWK--RA 111
Query: 198 KNDDQGQLPEPVERKQ 213
DD G E +ERKQ
Sbjct: 112 HADDDGL--ENLERKQ 125
>gi|304315186|ref|YP_003850333.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
marburgensis str. Marburg]
gi|302588645|gb|ADL59020.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
marburgensis str. Marburg]
Length = 1152
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K+ + F ++SP++IRKMSVT++ T E G P+ GL D RLG ID +C TC +
Sbjct: 7 KISRINFGLMSPEDIRKMSVTQVVTPDTYDEDGYPIENGLMDPRLGVIDPSLRCRTCGAK 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
GECPGHFG + LA+P+ H+GF T+ I+R +C+ C ++L E
Sbjct: 67 GGECPGHFGSINLARPVIHVGFADTIHKILRSICWKCGRVLLTE 110
>gi|88601371|ref|YP_501549.1| DNA-directed RNA polymerase subunit A' [Methanospirillum hungatei
JF-1]
gi|88186833|gb|ABD39830.1| DNA-directed RNA polymerase, subunit A' [Methanospirillum hungatei
JF-1]
Length = 886
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP ++ K+ +F +LSP EIR+MSV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRIGKI---EFGLLSPKEIRQMSVRKIIWADTYDDDGFPYPQGLMDLHLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKF 121
+TCS GECPGHFGH+ELAKP+ H+G+ + + ++R C C + +L+DEE +K
Sbjct: 60 KTCSQKAGECPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRECGRLLLSDEEIEKI 115
>gi|113957510|gb|ABI49118.1| RNA polymerase II largest subunit [Diploschistes cinereocaesius]
Length = 385
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL+DE D FK A++ R K R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILSDENDPTFKEAMRFRDGKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAE 191
+ I CK+K CE L D + ++RK GCG QPT+ G+ ++
Sbjct: 61 DAIWNVCKSKMVCEN------TPLSEDDDSDKPKERKHNHGGCGNTQPTIRRKGLTLMGT 114
Query: 192 YKAQRKKNDDQG 203
+KAQ+ ++ +G
Sbjct: 115 WKAQKGDDEAEG 126
>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
Length = 1016
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 14/139 (10%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P++H+GFM + ++ VC NC KIL DE + F A++ R PK R
Sbjct: 1 ECPGHFGHIELAVPVYHVGFMTKIKKLLETVCHNCGKILVDESNPAFADAIRRRDPKKRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK------SGCGALQPTLTIDGMNM 188
+ + CK K CE + + D + P K K GCG +QP + +G+ +
Sbjct: 61 DMVWRLCKPKMICE--------TTMALDNDVPSDKTKEPKHDHGGCGNIQPEVRREGLRL 112
Query: 189 IAEYKAQRKKNDDQGQLPE 207
+KAQ+ +++GQ PE
Sbjct: 113 TGTWKAQKGDEENEGQQPE 131
>gi|119872216|ref|YP_930223.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum islandicum DSM
4184]
gi|119673624|gb|ABL87880.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
4184]
Length = 884
Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats.
Identities = 55/128 (42%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P KV ++ ++F ILSP+ IRK SV E+ + E G+P+ GG++D RLG + +CE
Sbjct: 11 PRKV--IKSIKFGILSPEMIRKYSVMEVTTSEVYDEGGLPVRGGVADRRLGVAEPGARCE 68
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
TC CPGHFGH+EL KP+ H+GF + + I+R C NC +I L DEE +++ L
Sbjct: 69 TCGQTHDVCPGHFGHIELVKPVIHVGFARIIYDILRTTCPNCGRIMLKDEEIQRYRERLT 128
Query: 127 IRHPKSRL 134
K RL
Sbjct: 129 KLKGKWRL 136
>gi|169247150|gb|ACA51466.1| RNA polymerase II largest subunit, partial [Candida diversa]
Length = 230
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 79/136 (58%), Gaps = 12/136 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGFM + + CVC NC KIL DE + +F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFMAKIKKVCECVCMNCGKILVDEFTNPQFAQAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE V L D +EP + R+ GCG+ QPT+ DG+ + +K
Sbjct: 61 WSVCKTKMVCE------VDPPLDEDSDEP-QHRRGGCGSTQPTVRKDGLKLWGTWKRAHS 113
Query: 198 KNDDQGQLPEPVERKQ 213
++D E +ERKQ
Sbjct: 114 EDD----ALENLERKQ 125
>gi|18312086|ref|NP_558753.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum aerophilum str.
IM2]
gi|18159516|gb|AAL62935.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Pyrobaculum
aerophilum str. IM2]
Length = 884
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 4/132 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKR 63
F P KV ++ ++F +LSP+ IRK SV E+ + E G+P+ GG++D RLG +
Sbjct: 7 FDAIPKKV--IKSIKFGVLSPEMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVAEPG 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
+CETC CPGHFGH+EL KP+ H+GF + + ++R C NC +I L DEE ++++
Sbjct: 65 SRCETCGQTHDVCPGHFGHIELVKPVIHVGFARIIYDVLRATCPNCGRIMLRDEEIERYR 124
Query: 123 LALKIRHPKSRL 134
L + RL
Sbjct: 125 ERLNKLKARWRL 136
>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
Length = 1263
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 10/145 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
V + ++FS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC
Sbjct: 6 VKAIDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKLALKIRH 129
+ CPGHFGHLELA+P+ HI F+ + +++ C +C+++ +ED D FK +K +H
Sbjct: 66 NTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLDVFK-TIKDKH 124
Query: 130 P-------KSRLEQILCACKTKNKC 147
K EQI+ K +C
Sbjct: 125 AAYTVISQKRIPEQIIEKAKKAKEC 149
>gi|288931146|ref|YP_003435206.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
gi|288893394|gb|ADC64931.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
Length = 870
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 9/151 (5%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F +LSP EIR+MSV +I +T ++ G P+ GL D RLG +D +C TC
Sbjct: 5 RISAIKFEVLSPQEIRRMSVAKIFTPETYSDDGYPIESGLMDPRLGVVDPGLRCRTCGGK 64
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF-----KLALK 126
GECPGHFGH+ELA P+ H+G+ K + ++ C C +I L DE DK+ KL
Sbjct: 65 AGECPGHFGHIELAAPVIHVGYAKLIARLLNGTCRECGRILLKDERRDKYIAQIEKLKEL 124
Query: 127 IRHPKSRLEQILCACKTKNKCE--GGDEIDV 155
++ ++++ K KC G D+I+V
Sbjct: 125 GQNYDEVVKEVFRVTKAVKKCPHCGADQIEV 155
>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
Length = 891
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 7/125 (5%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P K ++ ++FSILSPD IR MSV EI +T E G PM GGL D RLG ++ +CE
Sbjct: 16 PLKT--IKAIKFSILSPDVIRSMSVMEITTSETYDEAGRPMVGGLMDRRLGVVEPGARCE 73
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF--KLA 124
TC + +CPGHFG +ELA+P+ H+ + K + ++R C C +I L DEE +K+ +LA
Sbjct: 74 TCGNPPDKCPGHFGRIELARPVIHVEYAKYIHDLLRTTCRECGRILLTDEEIEKYSKRLA 133
Query: 125 -LKIR 128
L++R
Sbjct: 134 RLRVR 138
>gi|284162089|ref|YP_003400712.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
gi|284012086|gb|ADB58039.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
Length = 871
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F +LSP EIR+MSV +I +T + G P+ GGL D RLG ID +C TC
Sbjct: 5 RISAIRFEVLSPQEIRRMSVAKIVSAETYDDDGFPIEGGLMDPRLGVIDPGLRCRTCGGK 64
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
GECPGHFGH+ELA P+ H+G+ K + ++ C C ++ L D+ DKF
Sbjct: 65 AGECPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECGRLRLPDKVRDKF 114
>gi|126460695|ref|YP_001056973.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum calidifontis
JCM 11548]
gi|126250416|gb|ABO09507.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis
JCM 11548]
Length = 884
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/110 (43%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPD IRK SV E+ + E G+P+ GG++D RLG + +CETC
Sbjct: 15 IKSIRFGILSPDMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVSEPGARCETCGQTH 74
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
CPGHFGH+EL KP+ H+G+ + + ++R C NC +I L DEE ++K
Sbjct: 75 DVCPGHFGHIELVKPVIHVGYARIIYDVLRATCPNCGRIMLKDEEIKRYK 124
>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 885
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ V+F ILSPDEIRKMSVT+I + + G P+ GG+ D RLG I+ C C +
Sbjct: 8 RITRVKFGILSPDEIRKMSVTQIFSAEVYDNDGSPIDGGVMDRRLGAIEPGEACPICGNT 67
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
CPGHFGH+ELAKP+ H+GF+K +L +R C NC ++ EE+
Sbjct: 68 RDSCPGHFGHIELAKPVIHVGFVKHILMYLRATCRNCGRLKIPEEE 113
>gi|374327623|ref|YP_005085823.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
gi|356642892|gb|AET33571.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
Length = 884
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 4/132 (3%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKR 63
F P KV ++ ++F +LSP+ IRK SV E+ + E G+P+ GG++D RLG +
Sbjct: 7 FDTIPRKV--IKSIKFGVLSPEIIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVAEPG 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
+CETC CPGHFGH+EL KP+ H+GF + + I+R C NC +I L DEE ++++
Sbjct: 65 ARCETCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLKDEEIERYR 124
Query: 123 LALKIRHPKSRL 134
L + RL
Sbjct: 125 ERLTKLKKRWRL 136
>gi|329765754|ref|ZP_08257323.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137820|gb|EGG42087.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 1263
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ + ++FS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC
Sbjct: 6 IKSIDAIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKLALKIRH 129
+ CPGHFGH+ELA+P+ HI F+ + +++ C +C+++ +ED D+F+ +K +H
Sbjct: 66 NTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLDEFR-KIKEKH 124
Query: 130 P-------KSRLEQILCACKTKNKC 147
K EQI+ K +C
Sbjct: 125 AAYTVISEKRIPEQIIEKAKKAKEC 149
>gi|393794932|ref|ZP_10378296.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 1263
Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ + ++FS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC
Sbjct: 6 IKSIDAIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKLALKIRH 129
+ CPGHFGH+ELA+P+ HI F+ + +++ C +C+++ +ED D+F+ +K +H
Sbjct: 66 NTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLDEFR-KIKEKH 124
Query: 130 P-------KSRLEQILCACKTKNKC 147
K EQI+ K +C
Sbjct: 125 AAYTVISEKRIPEQIIEKAKKAKEC 149
>gi|145592516|ref|YP_001154518.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum arsenaticum DSM
13514]
gi|145284284|gb|ABP51866.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum arsenaticum
DSM 13514]
Length = 884
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P KV ++ ++F +LSP+ IRK SV E+ + E G+P+ GG+SD RLG + +CE
Sbjct: 11 PRKV--IKSIKFGVLSPEVIRKYSVMEVTTSEVYDEGGLPVRGGISDRRLGVAEPGARCE 68
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
TC CPGHFGH+EL KP+ H+GF + + I+R C NC +I L DEE +++ L
Sbjct: 69 TCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLRDEEIARYRERLT 128
Query: 127 IRHPKSRL 134
+ RL
Sbjct: 129 RLSKRWRL 136
>gi|333911408|ref|YP_004485141.1| DNA-directed RNA polymerase subunit A' [Methanotorris igneus Kol 5]
gi|333751997|gb|AEF97076.1| DNA-directed RNA polymerase subunit A' [Methanotorris igneus Kol 5]
Length = 890
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP+ IRKMSV +I T + G P+ GGL D RLG ID C+TC +G C
Sbjct: 14 IIFGLLSPEHIRKMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKTCGGRVGTC 73
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+ELAKP+ HIGF K + I++ VC +C +I +E
Sbjct: 74 PGHFGHIELAKPVIHIGFAKDIYKILKAVCPHCGRIAINE 113
>gi|383320561|ref|YP_005381402.1| DNA-directed RNA polymerase, subunit A' [Methanocella conradii
HZ254]
gi|379321931|gb|AFD00884.1| DNA-directed RNA polymerase, subunit A' [Methanocella conradii
HZ254]
Length = 877
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++R ++F +LSP EIRKMSVT+I T + G P+ GL D RLG ID +C TC
Sbjct: 6 RIRKIKFGLLSPAEIRKMSVTKIITADTYDDDGYPIDMGLMDPRLGVIDPGLRCRTCGGR 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
GECPGHFGH+ELA P+ H+GF + L I+ C C +++ DE+
Sbjct: 66 PGECPGHFGHIELAAPVIHVGFARLLRKILMTTCRRCGRLMLDEK 110
>gi|356472425|gb|AET10297.1| RNA polymerase II largest subunit [Ogataea thermomethanolica]
Length = 229
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 80/141 (56%), Gaps = 13/141 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE-DDKFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGF+ + + CVC NC KIL DE + +F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFVSKIKKVCECVCMNCGKILLDEAINPQFAAAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE +D S GH + + GCGA QPT+ DG+ + +K +
Sbjct: 61 WSLCKTKMVCEVDQPVDNES--GH-----TQHLRGGCGASQPTIRRDGLKLWGSWK--KS 111
Query: 198 KNDDQGQLPEPVERKQTLTAE 218
NDD G + ER+Q AE
Sbjct: 112 SNDDDG---DQAERRQISAAE 129
>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
Length = 1017
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 10/138 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSR 133
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE D+ F AL+ R PK R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEHDNPAFADALRYRDPKRR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK----SGCGALQPTLTIDGMNMI 189
+ I CK K CE D G +P + +K GCG LQP + +G+ +
Sbjct: 61 FDAIWRLCKPKLVCETSTVED-----SDYGSKPEKGKKISKHGGCGNLQPEVRREGLRLT 115
Query: 190 AEYKAQRKKNDDQGQLPE 207
+KAQ+ +++ Q PE
Sbjct: 116 GTWKAQKGDEENETQQPE 133
>gi|379005505|ref|YP_005261177.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
gi|375160958|gb|AFA40570.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
Length = 884
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P KV ++ ++F +LSP+ IRK SV E+ + E G+P+ GG+SD RLG + +CE
Sbjct: 11 PRKV--IKSIKFGVLSPEVIRKYSVMEVTTSEVYDEGGLPVRGGISDRRLGVAEPGARCE 68
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
TC CPGHFGH+EL KP+ H+GF + + I+R C NC +I L DEE +++ L
Sbjct: 69 TCGQTHDVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLRDEEIARYRERLT 128
Query: 127 IRHPKSRL 134
+ RL
Sbjct: 129 RLSKRWRL 136
>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
[Nitrosopumilus maritimus SCM1]
gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
SCM1]
Length = 1263
Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
V + ++FS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC
Sbjct: 6 VKAIDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+ CPGHFGHLELA+P+ HI F+ + +++ C +C+++ +ED +K +H
Sbjct: 66 NTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLNVFKTIKEKHA 125
Query: 131 -------KSRLEQILCACKTKNKC 147
K EQI+ K +C
Sbjct: 126 AYTVISQKRIPEQIIEKAKKAKEC 149
>gi|298674727|ref|YP_003726477.1| DNA-directed RNA polymerase subunit A' [Methanohalobium evestigatum
Z-7303]
gi|298287715|gb|ADI73681.1| DNA-directed RNA polymerase subunit A' [Methanohalobium evestigatum
Z-7303]
Length = 881
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCE 67
P +V ++R F +LSP E+RKMSVT I T + G P+ GL D+RLG ID C+
Sbjct: 8 PKRVGEIR---FGLLSPREVRKMSVTPIITADTYDDDGYPIDMGLMDMRLGVIDPGLICK 64
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
TC S G+CPGHFGH+EL P+ H+GF K +L +R +C NCS L
Sbjct: 65 TCGSRAGDCPGHFGHIELVAPVIHVGFNKLILKSLRSICRNCSNFL 110
>gi|312136875|ref|YP_004004212.1| DNA-directed RNA polymerase, subunit a' [Methanothermus fervidus
DSM 2088]
gi|311224594|gb|ADP77450.1| DNA-directed RNA polymerase, subunit A' [Methanothermus fervidus
DSM 2088]
Length = 870
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K++ ++F+++SP+EIR +SV +ID T E G P+ GGL D RLG ID +C+TC
Sbjct: 7 KIKEIEFTLMSPEEIRNLSVVKIDTPDTYDEDGYPIEGGLMDPRLGVIDPSLRCKTCGLR 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
G+CPGHFG +ELA+P+ H+GF + I+R C C +IL
Sbjct: 67 GGQCPGHFGRIELARPVIHVGFADVIHKILRSTCRKCGRIL 107
>gi|13183799|gb|AAK15346.1|AF338253_1 RNA polymerase II largest subunit [Leptomonas seymouri]
Length = 1657
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ + I+H K+ E G P+ GG++DLR+GT D + CE
Sbjct: 10 SQMPLQKVHDVQFEVFKERQIKAYATCRIEHAKSYEHGQPVRGGINDLRMGTTDFDYSCE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKLALK 126
TC ECPGHFG++ELA+P+F+I +L ++CVC C +L D D + K K
Sbjct: 70 TCGLKHPECPGHFGYIELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPTEMK---K 126
Query: 127 IRHPKS----RLEQILCA--CKTKNKCEG 149
I H + RL LC CK +G
Sbjct: 127 ITHVQGLNRLRLVAKLCGSVCKRSKDIQG 155
>gi|268323372|emb|CBH36960.1| probable DNA-directed RNA polymerase, subunit A' [uncultured
archaeon]
Length = 889
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 10 FKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCET 68
++ +++ ++F +LSP EIRKMS ++I T E G P+ GL + R+G ID +C+T
Sbjct: 1 MRLKRIKGIKFGLLSPKEIRKMSASKIITPDTYGEDGFPIELGLVNQRIGVIDPGLRCKT 60
Query: 69 CSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
C MGECPGHFGH+ELA P+ H+G+ K + I+ C C K+L EE
Sbjct: 61 CGGRMGECPGHFGHIELAAPIIHVGYAKMIYRILAATCRRCGKVLLGEE 109
>gi|282163888|ref|YP_003356273.1| DNA-directed RNA polymerase subunit A' [Methanocella paludicola
SANAE]
gi|282156202|dbj|BAI61290.1| DNA-directed RNA polymerase subunit A' [Methanocella paludicola
SANAE]
Length = 877
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++R ++F +LSP EIRKMSVT++ T + G P+ GL D RLG ID +C+TC
Sbjct: 6 RIRKIKFGLLSPAEIRKMSVTKVITADTYDDDGYPIDMGLMDPRLGVIDPGLRCKTCGGR 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
GECPGHFGH+ELA P+ H+GF + L I+ C C K++ D++
Sbjct: 66 PGECPGHFGHIELASPVIHVGFARLLRKILMTTCRRCGKLMLDDK 110
>gi|73671120|ref|YP_307135.1| DNA-directed RNA polymerase subunit A' [Methanosarcina barkeri str.
Fusaro]
gi|72398282|gb|AAZ72555.1| DNA-directed RNA polymerase, subunit A' [Methanosarcina barkeri
str. Fusaro]
Length = 880
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F +LSP EIRKMS T I T + G P+ GL D RLG ID +C+TCS
Sbjct: 10 RISSIKFGLLSPKEIRKMSSTPIITADTYDDDGFPIDMGLMDTRLGVIDPGLRCKTCSGR 69
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
GECPGHFGH+EL P+ H+GF K + ++R C CS++L D
Sbjct: 70 AGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSRLLLD 112
>gi|374633177|ref|ZP_09705544.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
gi|373524661|gb|EHP69538.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
Length = 886
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
V+ ++F ILSPDEIRKMSVT I + E G P+ G + D RLG I+ KC C + +
Sbjct: 12 VKGIRFGILSPDEIRKMSVTAIITAEVYDEDGTPIEGSVMDPRLGVIEPGQKCPVCGNVI 71
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++R C C ++ L ++E K+K A+K R
Sbjct: 72 GNCPGHFGHIELIRPVIHVGFVKHVYDLLRSTCRRCGRVKLHEDEIQKYKKIHEAIKRRW 131
Query: 130 PKS 132
P +
Sbjct: 132 PSA 134
>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
Length = 880
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 25/209 (11%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++ C C ++ ++++E +K+ A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR-----------KRKSGCGALQ 178
P + KT K + + H GE+ + +RK G L
Sbjct: 126 PSAARRLTEYVKKTAMKAQ---------VCPHCGEKQFKIKLEKPYNFYEERKEGVAKLT 176
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P+ + + + E + D PE
Sbjct: 177 PSDIRERLEKVPESDVEILGYDPTTSRPE 205
>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
Length = 880
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 25/209 (11%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++ C C ++ ++++E +K+ A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR-----------KRKSGCGALQ 178
P + KT K + + H GE+ + +RK G L
Sbjct: 126 PSAARRLTEYVKKTAMKAQ---------VCPHCGEKQFKIKLEKPYNFYEERKEGVAKLT 176
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P+ + + + E + D PE
Sbjct: 177 PSDIRERLEKVPESDVEILGYDPTTSRPE 205
>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
Length = 880
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 25/209 (11%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++ C C ++ ++++E +K+ A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR-----------KRKSGCGALQ 178
P + KT K + + H GE+ + +RK G L
Sbjct: 126 PSAARRLTEYVKKTAMKAQ---------VCPHCGEKQFKIKLEKPYNFYEERKEGVAKLT 176
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P+ + + + E + D PE
Sbjct: 177 PSDIRERLEKVPESDVEILGYDPTTSRPE 205
>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
Length = 880
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++ C C ++ ++++E +K+ A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PKS 132
P +
Sbjct: 126 PSA 128
>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
Length = 880
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++ C C ++ ++++E +K+ A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PKS 132
P +
Sbjct: 126 PSA 128
>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
Length = 1015
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 11/134 (8%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GF+ + ++ VC NC KI DE FK AL+IR PK R
Sbjct: 1 ECPGHFGHIELATPVFHVGFITKIKKLLETVCHNCGKIKVDESSVAFKDALRIRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR---KSGCGALQPTLTIDGMNMIAE 191
+ I CK K CE D D ++P+++ GCG +QP + DG+ ++
Sbjct: 61 DGIWRLCKPKLICEMSATQD------EDNKDPVKEPLPGHGGCGNIQPEVRRDGLKLMGT 114
Query: 192 YKAQRKKNDDQGQL 205
+K Q K DD+G++
Sbjct: 115 WKPQ--KGDDEGEV 126
>gi|374635618|ref|ZP_09707213.1| DNA-directed RNA polymerase subunit A' [Methanotorris formicicus
Mc-S-70]
gi|373561684|gb|EHP87913.1| DNA-directed RNA polymerase subunit A' [Methanotorris formicicus
Mc-S-70]
Length = 889
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP+ IRKMSV +I T + G P+ GGL D RLG ID C+TC +G C
Sbjct: 14 IIFGLLSPEYIRKMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKTCGGRVGTC 73
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+ELAKP+ HIGF K + I++ VC +C ++ +E
Sbjct: 74 PGHFGHIELAKPVIHIGFAKDIYRILKAVCPHCGRVAINE 113
>gi|15679064|ref|NP_276181.1| DNA-directed RNA polymerase subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685898|sp|O27125.1|RPOA1_METTH RecName: Full=DNA-directed RNA polymerase subunit A'
gi|2622150|gb|AAB85542.1| DNA-dependent RNA polymerase, subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 870
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ K+ + F ++SP++IRKMSVT+I T E G P+ GL D RLG ID +C TC
Sbjct: 5 LKKISQINFGLMSPEDIRKMSVTQIVTPDTYDEDGYPIENGLMDPRLGVIDPSLRCRTCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ GECPGHFG + LA+P+ H+GF T+ I+R C C ++L E +
Sbjct: 65 AKGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETE 112
>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
Length = 1016
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 14/139 (10%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE + F AL+ R PK R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFVDALRYRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK------SGCGALQPTLTIDGMNM 188
+ + CK K CE + + D + P K+K GCG +QP + +G+ +
Sbjct: 61 DAVWRLCKPKMICE--------TTIAMDDDAPPEKQKEPKHDHGGCGNIQPEIRREGLRL 112
Query: 189 IAEYKAQRKKNDDQGQLPE 207
+K Q+ +++ Q PE
Sbjct: 113 NGTWKPQKGDEENEVQQPE 131
>gi|146302819|ref|YP_001190135.1| DNA-directed RNA polymerase subunit A' [Metallosphaera sedula DSM
5348]
gi|145701069|gb|ABP94211.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
5348]
Length = 886
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ V+F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC C + +
Sbjct: 12 IKGVRFGILSPDEIRKMSVTAIITADVYDEDGTPIEGSVMDSRLGIIEPGQKCPICGNVI 71
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+GF+K + ++R C C ++ E D +K++ A+K R
Sbjct: 72 GNCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCRRCGRVKISENDIEKYRKIYDAIKKRW 131
Query: 130 PKS 132
P +
Sbjct: 132 PSA 134
>gi|340344217|ref|ZP_08667349.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519358|gb|EGP93081.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 1263
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ + ++FS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC
Sbjct: 6 IKTIDAIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+ CPGHFGH+ELA+P+ HI F+ + +++ C +C+++ +ED + +K +H
Sbjct: 66 NTAARCPGHFGHIELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLEEFRKIKEKHA 125
Query: 131 -------KSRLEQILCACKTKNKC 147
K EQI+ K +C
Sbjct: 126 AYTVISEKRIPEQIIEKAKKAKEC 149
>gi|327401232|ref|YP_004342071.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
gi|327316740|gb|AEA47356.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
Length = 871
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F +LSP EIR+MSV +I +T + G P+ GL D RLG ID +C TC
Sbjct: 5 RISGIRFEVLSPQEIRRMSVAKIITPETYDDDGFPIEAGLMDPRLGVIDPGLRCRTCGGK 64
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
GECPGHFGH+ELA P+ H+G+ K + ++ C C +I L D++ DKF
Sbjct: 65 AGECPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECGRILLKDDKRDKF 114
>gi|403417007|emb|CCM03707.1| predicted protein [Fibroporia radiculosa]
Length = 173
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 2/98 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDK 62
F +S V KV+ VQF ILSP+EI+ SV +I++ + + P +GGL D R+GTID+
Sbjct: 6 FAYSAAPVRKVKEVQFGILSPEEIKAYSVAKIEYPEVMDEATHKPKSGGLMDPRMGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLT 100
FKC+TC M ECPGHFGH+ELA+P+FH G + LL+
Sbjct: 66 NFKCQTCGEGMSECPGHFGHIELARPVFHPGTHRGLLS 103
>gi|125657570|gb|ABN48848.1| RNA polymerase II largest subunit [Nonionella labradorica]
Length = 496
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 18/148 (12%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL-ADEEDDKFKLALKIRHPKSR 133
ECPGHFGH+ELA+P +H+GF+ L ++RCVC++CS++L AD D FK AL+I P+ R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLPITLRVLRCVCYHCSRLLCADPNSDAFKAALRIEIPRER 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTI-DGMNMIAE 191
L +IL C+ K C GD+ID DGE+ +++ SGCG +QP G+ + E
Sbjct: 61 LIEILHLCEKKKFCGSGDKID------EDGEDKEQEKVYSGCGNMQPKYRKGTGVKIEIE 114
Query: 192 YKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ + +D RKQ L+A R
Sbjct: 115 FPERDGGGED---------RKQYLSALR 133
>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
Length = 1263
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 8/138 (5%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++FS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC + C
Sbjct: 12 IRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTAARC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFK------LALKIRH 129
PGHFGH+ELA+P+ HI F+ + +++ C +C+++ +ED + FK A +
Sbjct: 72 PGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLEAFKRIKDKHAAYTVVS 131
Query: 130 PKSRLEQILCACKTKNKC 147
K EQI+ K +C
Sbjct: 132 QKRIPEQIIEKAKKAKEC 149
>gi|325969566|ref|YP_004245758.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
gi|323708769|gb|ADY02256.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
Length = 891
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P K ++ ++FSILSPD IR +SV EI +T E G PM GGL D RLG ++ +CE
Sbjct: 16 PLKT--IKAIKFSILSPDIIRSLSVMEITTSETYDEAGRPMVGGLMDRRLGVVEPGARCE 73
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
TC + +CPGHFG +ELA+P+ H+ + K + ++R C C +I L DEE +K+ L+
Sbjct: 74 TCGNPPDKCPGHFGRIELARPVIHVEYAKYVHDLLRTTCRECGRILLTDEEIEKYSKRLE 133
>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
Length = 886
Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F ILSPDEIRKMSVT+I + + G P+ GG+ D RLG I+ C C +
Sbjct: 9 RISRIKFGILSPDEIRKMSVTQIFSSEVYDNDGSPIDGGVMDRRLGAIEPGETCPICGNT 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
CPGHFGH+ELAKP+ H+GF K +L ++ C NC ++ EE+
Sbjct: 69 RDSCPGHFGHIELAKPVIHVGFAKQILIYLKATCRNCGRLKIPEEE 114
>gi|150402532|ref|YP_001329826.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C7]
gi|150033562|gb|ABR65675.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C7]
Length = 889
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP++IR MSV +I T + G P+ GGL D RLG ID C++CS +G C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+KP+ HIGF K + I++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKPVIHIGFAKDIYKILKAVCPHCGKVTITE 112
>gi|159905693|ref|YP_001549355.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C6]
gi|159887186|gb|ABX02123.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C6]
Length = 889
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP++IR MSV +I T + G P+ GGL D RLG ID C++CS +G C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+KP+ HIGF K + I++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKPVIHIGFAKDIYKILKAVCPHCGKVTITE 112
>gi|134045260|ref|YP_001096746.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C5]
gi|132662885|gb|ABO34531.1| DNA-directed RNA polymerase, subunit A' [Methanococcus maripaludis
C5]
Length = 889
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP++IR MSV +I T + G P+ GGL D RLG ID C++CS +G C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+KP+ HIGF K + I++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKPVIHIGFAKDIYKILKAVCPHCGKVAITE 112
>gi|21228373|ref|NP_634295.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452210796|ref|YP_007490910.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
gi|20906843|gb|AAM31967.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452100698|gb|AGF97638.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
Length = 880
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F ++SP EIRKMS T I T + G P+ GL D +LG ID +C+TCS
Sbjct: 10 RISSIKFGLMSPKEIRKMSATPIITADTYDDDGFPIDMGLMDTKLGVIDPGLRCKTCSGR 69
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
GECPGHFGH+EL P+ H+GF K + ++R C CSKIL
Sbjct: 70 AGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSKIL 110
>gi|340624673|ref|YP_004743126.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
X1]
gi|339904941|gb|AEK20383.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
X1]
Length = 889
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP++IR MSV +I T + G P+ GGL D RLG ID C++CS +G C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+KP+ HIGF K + I++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITE 112
>gi|45358926|ref|NP_988483.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
S2]
gi|45047792|emb|CAF30919.1| RNA polymerase, alpha subunit [Methanococcus maripaludis S2]
Length = 889
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP++IR MSV +I T + G P+ GGL D RLG ID C++CS +G C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+KP+ HIGF K + I++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITE 112
>gi|401426590|ref|XP_003877779.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494025|emb|CBZ29319.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1662
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ + I+H K+ E G P+ GG++DLR+GT D + CE
Sbjct: 10 SQMALQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC ECPGHFG++ELA+P+F+I +L ++CVC C +L D D +
Sbjct: 70 TCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMKKIAH 129
Query: 128 RHPKSRLEQI--LCA--CK-TKN--KCEG 149
+RL + LC CK TK+ CEG
Sbjct: 130 LQGLNRLRMVAKLCGSVCKRTKDIQGCEG 158
>gi|110669625|gb|ABG81907.1| RNA polymerase II largest subunit [Echinoplaca strigulacea]
Length = 1017
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GF+ + ++ VC NC KIL DE + F AL+ R PK R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFITKIKKLLETVCHNCGKILVDESNPAFADALRYRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHD--GEEPLRKRKS--GCGALQPTLTIDGMNMIA 190
+ + CK K CE S+L D EE + R GCG +QP + +G+ +
Sbjct: 61 DAVWRLCKPKMICE------TTSMLEDDQANEESKKTRHDHGGCGNVQPEIRREGLRLNG 114
Query: 191 EYKAQRKKNDDQGQLPEPVERKQT 214
+K Q K D++ + +P +R+ T
Sbjct: 115 TWKVQ--KGDEENENAQPEKRQIT 136
>gi|154342676|ref|XP_001567286.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064615|emb|CAM42715.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1662
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 67/111 (60%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ + ++H K+ E G P+ GG++DLR+GT D + CE
Sbjct: 10 SQMPLQKVHEVQFEVFKESQIKAYAKCIVEHAKSYEHGQPVRGGINDLRMGTTDFEYSCE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
TC ECPGHFG++ELA+P+F+I +L ++CVC C +L D D
Sbjct: 70 TCGLKHPECPGHFGYVELAEPIFNINVFDIVLIALKCVCKYCGALLMDTND 120
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 54/228 (23%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTE------------IDHGKTTERGMPMAGGL 52
F S ++ +++ +QF I++P+E+R+ SVT+ + +T G P+ GG+
Sbjct: 24 FGHSSARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYETYMSGQPVYGGV 83
Query: 53 SDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI 112
+D RLG + + PG+FGH+ELA+P++H GF+ L +RCVCF+CS+I
Sbjct: 84 NDPRLGDLHDKSD-----------PGYFGHIELARPVYHQGFIDVTLKALRCVCFHCSRI 132
Query: 113 LADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS 172
++ + KF+ A +IR+ K RL+ + + K KC+
Sbjct: 133 TMEDTEYKFQRARQIRNRKRRLDAMHALIRPKKKCD------------------------ 168
Query: 173 GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLP-EPVERKQTLTAER 219
C QP T G+++ EY D+ ++P ++KQ ++A++
Sbjct: 169 HCNGYQPKYTKVGLHVEIEYA------DEMERVPGSSGDKKQFMSAQK 210
>gi|388580014|gb|EIM20332.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1409
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHG---KTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+++ VQFS LSP E+ K+S TE+ H T P G+ D R GT DK C+TC
Sbjct: 12 RIKHVQFSTLSPQELVKISETEVTHNGLYNPTPDRAPQRNGVLDRRFGTSDKSGSCDTCG 71
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+M EC GH+G+++LA P+FHIG+ + ++ I++ +C NC+++L EE + L + R P
Sbjct: 72 ESMAECVGHYGYIKLALPVFHIGYFRDIIAILQDICKNCARVLLTEEQRRSYLK-RFRRP 130
Query: 131 KSRLEQILCACKTKN 145
Q ACK N
Sbjct: 131 NLENLQRQTACKAVN 145
>gi|398020383|ref|XP_003863355.1| RNA polymerase ii largest subunit [Leishmania donovani]
gi|322501587|emb|CBZ36666.1| RNA polymerase ii largest subunit [Leishmania donovani]
Length = 1662
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ + I+H K+ E G P+ GG++DLR+GT D + CE
Sbjct: 10 SQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
TC ECPGHFG++ELA+P+F+I +L ++CVC C +L D D
Sbjct: 70 TCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTND 120
>gi|146095454|ref|XP_001467585.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
gi|134071950|emb|CAM70645.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
Length = 1662
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ + I+H K+ E G P+ GG++DLR+GT D + CE
Sbjct: 10 SQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
TC ECPGHFG++ELA+P+F+I +L ++CVC C +L D D
Sbjct: 70 TCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTND 120
>gi|157873478|ref|XP_001685248.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
gi|68128319|emb|CAJ08467.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
Length = 1662
Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ + I+H K+ E G P+ GG++DLR+GT D + CE
Sbjct: 10 SQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
TC ECPGHFG++ELA+P+F+I +L ++CVC C +L D D
Sbjct: 70 TCGLRHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTND 120
>gi|169247108|gb|ACA51445.1| RNA polymerase II largest subunit, partial [Candida galli]
Length = 229
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 75/129 (58%), Gaps = 7/129 (5%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + I VCF+C K+L DE + +F A++IR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKICESVCFHCGKVLLDENNKQFAQAIRIRDPKRRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK C E DV + DG ++ GCG +QPT+ DG+ + +K + K
Sbjct: 61 SLCKTKMVC----ETDVPT--EDDGSGVVKHSHGGCGNIQPTVRRDGLKLWGTWK-RGKN 113
Query: 199 NDDQGQLPE 207
DD G PE
Sbjct: 114 GDDMGDSPE 122
>gi|356472423|gb|AET10296.1| RNA polymerase II largest subunit [Ogataea angusta]
Length = 229
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGF+ + + CVC NC KIL DE + +F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFVSRIKKVCECVCMNCGKILLDEATNPQFAAAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE ID D + + GCGA QPT+ DG+ + +K +
Sbjct: 61 WSLCKTKMVCEVDQPID-------DESGRTQHLRGGCGASQPTIRRDGLKLWGSWK--KS 111
Query: 198 KNDDQGQLPEPVERKQTLTAE 218
+DD G + ER+Q AE
Sbjct: 112 SSDDDG---DQAERRQISAAE 129
>gi|13310932|gb|AAF36438.2|AF126254_1 RNA polymerase II largest subunit [Leishmania donovani]
Length = 1665
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 67/111 (60%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
S + KV VQF + +I+ + I+H K+ E G P+ GG++DLR+GT D + CE
Sbjct: 10 SQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEYSCE 69
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
TC ECPGHFG++ELA+P+F+I +L ++CVC C +L D D
Sbjct: 70 TCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTND 120
>gi|300394254|gb|ADK11753.1| DNA-directed RNA polymerase II subunit one [Pseudomerulius
curtisii]
Length = 232
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPAF--AEKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CK+K CE D + G D EEP +K GCG QP + +G+ + +
Sbjct: 59 ARMAIVWSHCKSKTICETDDPKEETD--GVDNEEP-KKGHGGCGHQQPAIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK R K+DD+
Sbjct: 116 YK--RAKDDDE 124
>gi|356472427|gb|AET10298.1| RNA polymerase II largest subunit [Ogataea siamensis]
Length = 229
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 77/141 (54%), Gaps = 13/141 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGF+ + + CVC NC KIL DE + +F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFVTKIKKVCECVCMNCGKILLDEATNPQFAAAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE D D + + GCGA QPT+ DG+ + +K +
Sbjct: 61 WSLCKTKMVCEVDQPAD-------DDSGRSQHLRGGCGASQPTIRRDGLKLWGSWK--KS 111
Query: 198 KNDDQGQLPEPVERKQTLTAE 218
NDD G + ER+Q AE
Sbjct: 112 SNDDDG---DQAERRQISAAE 129
>gi|110669631|gb|ABG81910.1| RNA polymerase II largest subunit [Peltigera degenii]
Length = 1011
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 13/133 (9%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE + FK AL+ R PK R +
Sbjct: 1 CPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILLDESNADFKNALRFRDPKRRFD 60
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDG----EEPLRKRKSGCGALQPTLTIDGMNMIAE 191
I ACK K C D+L L D +EP + GCG QP + +G+ +
Sbjct: 61 AIWKACKPKMVC------DMLVLADDDAPDKSQEP-KHDHGGCGNRQPEIRKEGLKLTGT 113
Query: 192 YKAQRKKNDDQGQ 204
+KA +K+D++ Q
Sbjct: 114 WKA--RKDDEESQ 124
>gi|159040772|ref|YP_001540024.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
gi|157919607|gb|ABW01034.1| DNA-directed RNA polymerase subunit A' [Caldivirga maquilingensis
IC-167]
Length = 889
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 26/180 (14%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P KV ++ + F++LSPD IRKMSV E+ +T E G P+ GGL D RLG + +CE
Sbjct: 14 PLKV--IKEISFNVLSPDLIRKMSVMEVTTSETYDEAGNPVKGGLMDRRLGVDEPEARCE 71
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
TC ++ CPGHFG +EL +P+ H F+K + I+R C NC ++ L DEE ++ +K
Sbjct: 72 TCGNDWRRCPGHFGRIELVRPVVHPEFVKPIYDILRATCPNCGRLKLTDEEYKRYSERIK 131
Query: 127 --IRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
+H ++ ++++ K K R CGA QP + +D
Sbjct: 132 RLKKHWRALSDRLILRVKKKAAA--------------------RSTCPHCGAPQPKIRLD 171
>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
solfataricus P2]
gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
Length = 880
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+G +K + ++ C C ++ ++++E +K+ A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PKS 132
P +
Sbjct: 126 PSA 128
>gi|333986472|ref|YP_004519079.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp.
SWAN-1]
gi|333824616|gb|AEG17278.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp.
SWAN-1]
Length = 873
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K+ + F ++SP+ IRKMSVT+I T E G P+ GL D RLG ID +C +C S
Sbjct: 9 KISQINFGLMSPENIRKMSVTKIVTPDTYDEDGYPIEAGLMDPRLGVIDPGLRCRSCGSK 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-----DKFKLALKI 127
G+C GHFGH+ LA+P+ H+GF T+ ++R C C ++L E + DK + LK
Sbjct: 69 GGDCQGHFGHINLARPVIHVGFADTIHKVLRSTCKECGRVLLTESEIVDYRDKLETHLKN 128
Query: 128 RHPKSRLEQILCACKTKNKC 147
+ + + + ++KC
Sbjct: 129 NESITSIIKEIYTVARRDKC 148
>gi|113707388|gb|ABI36593.1| RNA polymerase II largest subunit [Ramalina complanata]
Length = 1015
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 12/150 (8%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLE 135
CPGHFGH+ELA P+FH+GFM + ++ VC NC K+L DE + F AL+ R K R +
Sbjct: 1 CPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKVLVDESNPAFVDALRYRDAKRRFD 60
Query: 136 QILCACKTKNKCE--GGDEIDVLSLLGHDGEEPLRKR--KSGCGALQPTLTIDGMNMIAE 191
+ CK K CE E D S +EP + + GCG +QP + +G+ +
Sbjct: 61 AVWRLCKPKMICESNASTEEDAPS------DEPKKPKHDHGGCGNIQPEIRREGLRLTGT 114
Query: 192 YKAQRKKNDDQGQLPE--PVERKQTLTAER 219
+KAQ+ +++GQ PE P+ + L R
Sbjct: 115 WKAQKGDEENEGQQPEKKPISPQMALNIFR 144
>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
niphandrodes]
Length = 1020
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 19/116 (16%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQ 136
PGHFGH+E KP+F+IGF+ ++T++RCVC++C K+L ++D +F ++IR P++RL +
Sbjct: 1 PGHFGHIEFVKPVFNIGFLPAVITVLRCVCYSCGKLLVSQDDARFLSVMRIRGPRARLAK 60
Query: 137 ILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
+L C+TK CE G E GCG LQP D +N++ ++
Sbjct: 61 LLTLCRTKPSCEPGPE-------------------GGCGCLQPQYRKDNVNILVDF 97
>gi|325960115|ref|YP_004291581.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp. AL-21]
gi|325331547|gb|ADZ10609.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp. AL-21]
Length = 871
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 6/140 (4%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K+ + F ++SP+ IRKMSVT+I T E G P+ GL D RLG ID +C +C S
Sbjct: 7 KISQIDFGLMSPENIRKMSVTKIVTPDTYDEDGYPIEAGLMDPRLGVIDPGLRCRSCGSK 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE---DDKFKLALKIRH 129
G+C GHFGH+ LA+P+ H+GF T+ I+R C +C ++L E D K K+ I++
Sbjct: 67 GGDCQGHFGHINLARPVIHVGFADTIHKILRSTCKDCGQVLLTESEKVDYKEKIETLIKN 126
Query: 130 PKSRLEQI--LCACKTKNKC 147
+S I + A ++KC
Sbjct: 127 EESITGIIKEIYAVARRDKC 146
>gi|414586610|tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 90/137 (65%), Gaps = 3/137 (2%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ ++FS+LS EIRK + ++ + + +R M P+ GL D R+G KR KC TC
Sbjct: 23 RIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVPNGLLDPRMGIPTKRGKCNTCHGE 82
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+CPGHFG+L+LA P+F++GF +L +++C+C +CS++L E+D + + K+R+P++
Sbjct: 83 FSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLIEKDRR-EFLKKMRNPRA 141
Query: 133 -RLEQILCACKTKNKCE 148
L++ K ++KC+
Sbjct: 142 DALQKSATMKKVRDKCK 158
>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
Length = 886
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F ILSPDEIRKMSVT+I + + G P+ GG+ D RLG I+ C C +
Sbjct: 9 RISRIKFGILSPDEIRKMSVTQIFSSEVYDNDGSPIDGGVMDRRLGAIEPGETCPICGNT 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
CPGHFGH+ELAKP+ H GF K +L ++ C NC ++ EE+
Sbjct: 69 RDSCPGHFGHIELAKPVIHAGFAKQILIYLKATCRNCGRLKIPEEE 114
>gi|336121472|ref|YP_004576247.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
gi|334855993|gb|AEH06469.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
Length = 888
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 10 FKVAK-VRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCE 67
F V K + + F +LSP+ IRK+SV +I T + G P+ GGL D RLG ID C+
Sbjct: 4 FDVPKEIGEIVFGLLSPEHIRKISVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCK 63
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
TC +G CPGHFGH+EL+KP+ HIGF K + I++ VC +C ++ E
Sbjct: 64 TCGGRVGSCPGHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGRVAISE 112
>gi|327311709|ref|YP_004338606.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
gi|326948188|gb|AEA13294.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
Length = 884
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P KV ++ ++F ILSPD IR+ SV EI + E G+P+ GGL D RLG + +CE
Sbjct: 11 PTKV--IKDIKFGILSPDLIRRYSVLEITTSEIYDEGGLPIRGGLMDRRLGVAEPGARCE 68
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
TC CPGHFGH+ELAKP+ H+ F + + ++R C NC +I L DEE ++ L+
Sbjct: 69 TCGQPYDVCPGHFGHIELAKPVIHVEFARFIYDVLRATCPNCGRIMLKDEEIKRYSERLQ 128
>gi|84490160|ref|YP_448392.1| DNA-directed RNA polymerase subunit A' [Methanosphaera stadtmanae
DSM 3091]
gi|84373479|gb|ABC57749.1| RpoA1 [Methanosphaera stadtmanae DSM 3091]
Length = 873
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ KV + F ++SP+ IRKMSVT+I T E G P+ GL D RLG ID KC TC
Sbjct: 5 IKKVSEIDFGLMSPEVIRKMSVTKIVTPDTYDEDGYPIESGLMDPRLGVIDPGLKCRTCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRH 129
S G+C GHFGH+ A+P+ H+GF T+ I+R C C ++ L D E ++K L+ R
Sbjct: 65 SKGGDCQGHFGHINFARPVIHVGFADTIHKILRSTCRKCGRVLLTDTEKLEYKDKLEERI 124
Query: 130 PKSR-----LEQILCACKTKNKC 147
L+QI A K K KC
Sbjct: 125 ENGEDISKILKQIHLAAK-KEKC 146
>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
Length = 1260
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
V + ++FS+ SP EIRK SV EI +T E GMP+ GGL D RLGT++ KC TC
Sbjct: 6 VKSISAIRFSVWSPHEIRKYSVAEITAPETYDEEGMPVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRH 129
+ CPGHFGH+ELA+P+ HI F+ + ++ +C +CS++ + EE D KIR
Sbjct: 66 NTAARCPGHFGHIELAEPILHIAFIDNIHKLLLGMCRSCSRLKVPQEELDSLS---KIRR 122
Query: 130 PKSRL---------EQILCACKTKNKC 147
+S EQIL K +C
Sbjct: 123 RESAYTVISQKRIPEQILDRAKKSKEC 149
>gi|116753354|ref|YP_842472.1| DNA-directed RNA polymerase subunit A' [Methanosaeta thermophila
PT]
gi|116664805|gb|ABK13832.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta thermophila
PT]
Length = 876
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 4/113 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCE 67
P ++ K+R F ++SP E RKMSV ++ T + G P+ GL D RLG ID +C
Sbjct: 4 PKRIGKIR---FGLISPQEFRKMSVVKVITADTYDDDGFPIEMGLMDPRLGVIDPGLRCR 60
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
TC GECPGHFGH++L P+ H+GF K + I+R +C CSK++ E + K
Sbjct: 61 TCGGRPGECPGHFGHIDLVAPVIHVGFAKLIRKILRAICRECSKLMLSELEKK 113
>gi|15678325|ref|NP_275440.1| DNA-dependent RNA polymerase subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621350|gb|AAB84803.1| DNA-dependent RNA polymerase, subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 133
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ K+ ++F ++SP++IRK+SV +I T E G P+ GL D RLG ID RF+C TC
Sbjct: 5 LKKIGGIEFGLMSPEDIRKISVAQIVTPDTYNEDGYPIENGLMDPRLGVIDPRFRCWTCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
+ GECPGHFG + LA+P+ H+GF T+ I+R C C ++L
Sbjct: 65 ARGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVL 107
>gi|124028420|ref|YP_001013740.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
gi|123979114|gb|ABM81395.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
Length = 881
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/107 (46%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+R V+F ILSPDEIRKMSVT I + E G P+ GGL D RLG I C TC ++
Sbjct: 8 IREVKFGILSPDEIRKMSVTAIVTSELYDEDGRPIPGGLMDPRLGAIAPGQICPTCGNDA 67
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
CPGHFG +EL +P+ H+GF K + ++R C C ++L E + K
Sbjct: 68 KGCPGHFGRIELVRPVIHVGFAKYIYDVLRATCRQCGRLLLPENEAK 114
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/147 (39%), Positives = 87/147 (59%), Gaps = 18/147 (12%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLE 135
GHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K + +K + P+ RL
Sbjct: 1 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLA 60
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMIAEY 192
+ CK K CEGG+++D L D ++P +K GCG QP++ G+++ AE+
Sbjct: 61 YVYDLCKGKTICEGGEDMD----LTKDNQQPDPNKKPGHGGCGHYQPSIRRTGLDLSAEW 116
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
K N+D E+K ++AER
Sbjct: 117 K---HPNEDSQ------EKKIVVSAER 134
>gi|408381652|ref|ZP_11179200.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
gi|407815583|gb|EKF86153.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
Length = 871
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K+ + F +LSP+ IR+MSVT+I T E G P+ GL D RLG ID +C +C S
Sbjct: 7 KIAQINFGLLSPENIRRMSVTKIVTPDTYDEDGYPIEAGLMDPRLGVIDPGLRCRSCGSK 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-----DKFKLALKI 127
G+C GHFGH+ LA+P+ H+GF T+ I+R C C ++L E + D+ + LK
Sbjct: 67 GGDCQGHFGHINLARPVVHVGFADTIHKILRSTCSECGRVLLTETERIDYRDRIESRLKN 126
Query: 128 RHPKSRLEQILCACKTKNKC 147
+ L + + ++KC
Sbjct: 127 EESITGLVKDVYTTARRDKC 146
>gi|171186406|ref|YP_001795325.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
gi|170935618|gb|ACB40879.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
Length = 884
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSP+ IRK SV E+ + E G+P+ GG++D RLG + +CETC
Sbjct: 15 IKSIKFGILSPEMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVAEPGARCETCGQTH 74
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHPKS 132
CPGHFGH+EL KP+ H+ + + + ++R C NC +I L DEE +++ L K
Sbjct: 75 DVCPGHFGHVELVKPVIHVEYARIIYDVLRTTCPNCGRIMLKDEEIQRYRERLTKLKSKW 134
Query: 133 RL 134
RL
Sbjct: 135 RL 136
>gi|169247122|gb|ACA51452.1| RNA polymerase II largest subunit, partial [Blastobotrys
proliferans]
Length = 227
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + I +CF+C K+L DE + F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFITKIKKICESICFHCGKLLLDESNPLFAQAIKIRDPKRRFHAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CK K CEG + G D ++ +K GCG QP++ DG+ ++ +K R K
Sbjct: 61 SLCKPKMVCEGDNS-------GGD-DDTGKKMHGGCGNTQPSIRRDGLKLVGTWK--RDK 110
Query: 199 NDDQGQLPE 207
N D+G PE
Sbjct: 111 NSDEGDQPE 119
>gi|424819586|ref|ZP_18244663.1| RNA polymerase Rpb2 domain 6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422563|gb|EGD71958.1| RNA polymerase Rpb2 domain 6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 840
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE-RGMPMAGGLSDLRLGTIDKRFKC 66
S F +K+ ++F ILSP I+KMS I + + G P+ GGLSDLR+G ID C
Sbjct: 5 SNFVFSKIAALEFGILSPKMIQKMSTVAITSSELYDIDGFPVDGGLSDLRMGVIDPGLTC 64
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
+TC + + +CPGHFGHLELA+P+F+I + + I+ C +C +IL +E
Sbjct: 65 KTCGNTIRDCPGHFGHLELARPVFNIKTVPYIYNILNSTCVSCGRILISDE 115
>gi|290558924|gb|EFD92312.1| RNA polymerase Rpb1 domain 1 [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 840
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE-RGMPMAGGLSDLRLGTIDKRFKC 66
S F +K+ ++F ILSP I+KMS I + + G P+ GGLSDLR+G ID C
Sbjct: 5 SNFVFSKIAALEFGILSPKMIQKMSTVAITSSELYDIDGFPVDGGLSDLRMGVIDPGLTC 64
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
+TC + + +CPGHFGHLELA+P+F+I + + I+ C +C +IL +E
Sbjct: 65 KTCGNTIRDCPGHFGHLELARPVFNIKTVPYIYNILNSTCVSCGRILISDE 115
>gi|20090127|ref|NP_616202.1| DNA-directed RNA polymerase subunit A' [Methanosarcina acetivorans
C2A]
gi|19915107|gb|AAM04682.1| DNA-directed RNA polymerase, subunit A [Methanosarcina acetivorans
C2A]
Length = 880
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F ++SP EIRKMS T I T + G P+ GL D +LG ID +C+TCS
Sbjct: 10 RIASIKFGLMSPKEIRKMSATPIITADTYDDDGFPIDMGLMDTKLGVIDPGLRCKTCSGR 69
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
GECPGHFGH+EL P+ H+GF K + ++R C CS++L
Sbjct: 70 AGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSRLL 110
>gi|169247146|gb|ACA51464.1| RNA polymerase II largest subunit, partial [Candida diddensiae]
gi|169247148|gb|ACA51465.1| RNA polymerase II largest subunit, partial [Candida diddensiae]
Length = 229
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A++IR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPAMAQAIRIRDPKRRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE E D +DG P R GCG QP + DG+ + +K +
Sbjct: 61 WNVCKTKMICEADPEDD-----NNDGSAPSTGR-GGCGHTQPVVRRDGLKLWGTWKQSKT 114
Query: 198 KNDDQ 202
++D+Q
Sbjct: 115 ESDEQ 119
>gi|48477330|ref|YP_023036.1| DNA-directed RNA polymerase subunit A' [Picrophilus torridus DSM
9790]
gi|48429978|gb|AAT42843.1| DNA-directed RNA polymerase subunit A' [Picrophilus torridus DSM
9790]
Length = 886
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ ++F++LSPDEIRKMS ++ T + G P+ GL DL +G I+ +C TC
Sbjct: 9 RIKDIKFALLSPDEIRKMSQVKVITPDTYDDDGYPIDKGLMDLHMGVIEPGLRCATCGGK 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
+ ECPGHFGH+ELA P+ H+GF+K + T++ C C +I L DEE + +K +++
Sbjct: 69 VDECPGHFGHIELAMPVVHVGFVKEIKTMLDSSCKVCGRIKLTDEEIENYKKSIE 123
>gi|126178251|ref|YP_001046216.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|126178264|ref|YP_001046229.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|125861045|gb|ABN56234.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
gi|125861058|gb|ABN56247.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
Length = 882
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP +V ++ +F + SP EIRKMSV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRVGRI---EFGLFSPKEIRKMSVRKIIWADTYDDDGFPYPQGLMDLNLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+TC +CPGHFGH+ELAKP+ H+G+ + + ++R C +CS++L E+
Sbjct: 60 KTCDQKAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCSRLLMTSEE 111
>gi|125657576|gb|ABN48851.1| RNA polymerase II largest subunit [Globigerinella siphonifera]
Length = 460
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 71/111 (63%), Gaps = 8/111 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL-ADEEDDKFKLALKIRHPKSR 133
ECPGHFGH+ELA+P +H+GF+ L ++RCVC CS +L D D FK ALKI + + R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLSITLRVLRCVCHYCSNLLCYDRNSDAFKTALKIENKRER 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDG-----EEPLRKRKSGCGALQP 179
+ +IL C+ K +C GD+ID + LG+ G EE + K CGALQP
Sbjct: 61 MIEILHLCEKKKRCGRGDQID--AKLGNSGDQNPEEEDAERVKFQCGALQP 109
>gi|397779348|ref|YP_006543821.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
MS2]
gi|396937850|emb|CCJ35105.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
MS2]
Length = 882
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP +V ++ +F + SP EIRKMSV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRVGRI---EFGLFSPKEIRKMSVRKIIWADTYDDDGFPYPQGLMDLHLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+TC +CPGHFGH+ELAKP+ H+G+ + + ++R C +CS++L E+
Sbjct: 60 KTCDQKAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCSRLLMTTEE 111
>gi|410722153|ref|ZP_11361465.1| DNA-directed RNA polymerase subunit A'', partial [Methanobacterium
sp. Maddingley MBC34]
gi|410597472|gb|EKQ52085.1| DNA-directed RNA polymerase subunit A'', partial [Methanobacterium
sp. Maddingley MBC34]
Length = 721
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 6/140 (4%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
K+ + F +LSP+ IR+MSVT+I T E G P+ GL D RLG ID +C +C S
Sbjct: 7 KIAQINFGLLSPENIRRMSVTKIVTPDTYDEDGYPIEAGLMDPRLGVIDPGLRCRSCGSK 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-----DKFKLALKI 127
G+C GHFGH+ LA+P+ H+GF T+ I+R C C ++L E + D+ LK
Sbjct: 67 GGDCQGHFGHINLARPVVHVGFADTIHKILRSTCSECGRVLLTETERIDYGDRIGSRLKN 126
Query: 128 RHPKSRLEQILCACKTKNKC 147
+ L + + ++KC
Sbjct: 127 EESITGLVKAVYTTARRDKC 146
>gi|355570729|ref|ZP_09041999.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
gi|354826011|gb|EHF10227.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
Length = 879
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP ++ K+ +F +LSP EIR MSV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRIGKI---EFGLLSPKEIRTMSVRKIIWADTYDDDGFPYPQGLMDLNLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+TC +CPGHFGH+ELAKP+ H+G+ + + ++R C +CS++L E+
Sbjct: 60 KTCDQKASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCSRLLLSPEE 111
>gi|145342014|ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576317|gb|ABO94385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1395
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 5 FTFSPFKVA----KVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLG 58
FT +PF A K+ V+FS++S EI + V + + + PM G+ D R+G
Sbjct: 20 FTKTPFAPASTPRKISAVRFSLMSSSEIGRAGVFHVFERNLYQMPQRTPMPNGILDPRMG 79
Query: 59 TIDKRF-KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
T DKR +C TC NM +C GHFG+++L P+FHIG+ K ++++++CVC NCS+IL +E+
Sbjct: 80 TTDKRGGECATCRGNMVDCAGHFGYIKLELPVFHIGYFKNIISVLQCVCKNCSRILLNED 139
Query: 118 DDKFKLALKIRHPKSRLEQ 136
D L + R+P+ + Q
Sbjct: 140 DQDMFLK-RYRNPRLEITQ 157
>gi|58395829|gb|AAW72741.1| RNA polymerase II largest subunit [Ramaria rubella]
Length = 235
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH+ELA+P+FHIGF+ + I+ +C NC K+ AD D F +K +R KSR
Sbjct: 1 ECPGHFGHIELARPVFHIGFIVKVKKILESICVNCGKLKADLSDPAFADKVKHVRDAKSR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ + CK+KN CE D I+ D P++K GCG +QP + +G+ + +YK
Sbjct: 61 MSVVWSHCKSKNLCE-PDVIEETEGETQDETVPVKKGHGGCGHVQPQVRKEGLKLFLQYK 119
Query: 194 AQRKKNDDQGQLPEPVER 211
+ ++D + +P +R
Sbjct: 120 KTKDEDDMDVKSTQPEKR 137
>gi|257076605|ref|ZP_05570966.1| DNA-directed RNA polymerase subunit A' [Ferroplasma acidarmanus
fer1]
Length = 887
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F++LSPDEIRKMS + T + G P+ GL DL +G I+ KC TC
Sbjct: 9 RIEKIKFALLSPDEIRKMSQIRVITPDTYDDDGYPIERGLMDLHMGVIEPGLKCATCGGK 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
+ ECPGHFGH+ELA P+ HIGF+K + T++ C C +I L D+E + ++
Sbjct: 69 VDECPGHFGHIELAMPVVHIGFIKEIKTMLDASCKECGRIKLTDDEINNYR 119
>gi|307353875|ref|YP_003894926.1| DNA-directed RNA polymerase subunit A' [Methanoplanus petrolearius
DSM 11571]
gi|307157108|gb|ADN36488.1| DNA-directed RNA polymerase subunit A' [Methanoplanus petrolearius
DSM 11571]
Length = 880
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP +V K+ +F +LSP +IRKMSV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRVGKI---EFGLLSPKDIRKMSVRKIIWADTYDDDGFPYPQGLMDLHLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+TC + +CPGHFGH+ELAKP+ H+G+ + + ++R C C ++L E++
Sbjct: 60 KTCGNRASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVSCRECGRLLLSEDE 111
>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
Length = 1016
Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE + F A + R PK R
Sbjct: 1 ECPGHFGHIELAAPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFADAQRYRDPKRRF 60
Query: 135 EQILCACKTKNKCEG--GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
+ + CK K CE E D + D + + GCG QP + +G+ + +
Sbjct: 61 DAVWRLCKPKLICEATPAAEDDAPT----DDPKKQKHDHGGCGNAQPEIRREGLRLTGTW 116
Query: 193 KAQRKKNDDQGQLPE--PVERKQTLTAER 219
K Q+ ++ + Q P+ P+ + L R
Sbjct: 117 KPQKGDDETEAQQPDKRPITPQMVLNIFR 145
>gi|330507365|ref|YP_004383793.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
gi|328928173|gb|AEB67975.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
Length = 875
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCE 67
P ++ K+R F ++SP E RKMSV +I T + G P+ GL D RLG ID +C
Sbjct: 4 PKRIGKIR---FGLISPQEFRKMSVVKIITADTYDDDGFPIEMGLMDPRLGVIDPGLRCR 60
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKL 123
+C GECPGHFGH++L P+ H+GF K + ++R +C +CS+++ + + K L
Sbjct: 61 SCGGRPGECPGHFGHIDLIAPVIHVGFAKLIRKVLRAICRDCSRLMLKDNEKKMYL 116
>gi|356472429|gb|AET10299.1| RNA polymerase II largest subunit [Ogataea chonburiensis]
Length = 230
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 79/141 (56%), Gaps = 12/141 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIGF+ + + CVC NC KIL DE + +F A KI+ PK R +
Sbjct: 1 HFGHIELAKPVFHIGFVAKIKKVCECVCMNCGKILLDEATNPQFAAATKIKDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CK K CE +D S +GH + + GCGA QPT+ DG+ + +K +
Sbjct: 61 WSLCKAKMICEVDQPMDDES-MGH-----TQHLRGGCGAQQPTIRRDGLKLWGSWK--KS 112
Query: 198 KNDDQGQLPEPVERKQTLTAE 218
+DD G E ER+Q AE
Sbjct: 113 SSDDDG---EQAERRQISAAE 130
>gi|150401218|ref|YP_001324984.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
Nankai-3]
gi|150013921|gb|ABR56372.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
Nankai-3]
Length = 888
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP+ IRK+SV +I T + G P+ GGL D RLG ID C+TC +G C
Sbjct: 13 IVFGLLSPEYIRKISVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKTCGGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+KP HIG+ K + I++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKPAVHIGYAKDIYKILKAVCPHCGKVALSE 112
>gi|448731185|ref|ZP_21713488.1| DNA-directed RNA polymerase subunit A' [Halococcus saccharolyticus
DSM 5350]
gi|445792779|gb|EMA43380.1| DNA-directed RNA polymerase subunit A' [Halococcus saccharolyticus
DSM 5350]
Length = 984
Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 4/207 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F +++P+E R+MS T+I T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGAIDFGLMNPEEYREMSATKIITADTYDDDGYPIDMGLMDPRLGVIDPGLECKTCGQH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
G C GHFGH+ELA P+ H+GF K + ++R C CS++L DE+ ++ + A +++ +
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFTKLMRRLLRGTCRECSRLLLDEQ-ERNEFANRLQRARE 127
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
+ I TK + D + G + + ++ + +Q LT + +IAE
Sbjct: 128 LDDDINDV--TKAAIRQARKKDRCAYCGEEQYDIQHEKPTTYYEVQDVLTAEYPELIAEA 185
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
+++DD G P+ + + + R
Sbjct: 186 MQPDEESDDPGSSPQQLADETDIDLSR 212
>gi|300394236|gb|ADK11744.1| DNA-directed RNA polymerase II subunit one [Jaapia argillacea]
Length = 252
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 12/131 (9%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CK+K CE D G D EEP +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWSHCKSKMVCEA----DEPKEEGEDSEEP-KKGHGGCGHQQPLIRKEGLKLFLQ 113
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 114 YK--KSKDDDE 122
>gi|148642969|ref|YP_001273482.1| DNA-directed RNA polymerase subunit A' [Methanobrevibacter smithii
ATCC 35061]
gi|148551986|gb|ABQ87114.1| DNA-dependent RNA polymerase, subunit A', RpoA [Methanobrevibacter
smithii ATCC 35061]
Length = 894
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ K++ + F ++SP++IR+MSV +I+ T E G P+ GL D LG ID KC +C
Sbjct: 5 IKKIKQINFGLMSPEDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVIDPSLKCRSCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
GEC GHFG +ELA+P+ H+GF + I+R C C ++L +D+ FK KI+
Sbjct: 65 YRGGECQGHFGSIELARPVIHVGFGDIIHKILRSTCNECGRVLL-TDDEIFKYTEKIKDA 123
Query: 131 KSRLEQI 137
++ E +
Sbjct: 124 QNHHENL 130
>gi|377684879|gb|AFB74458.1| RNA polymerase II largest subunit, partial [Candida atakaporum]
Length = 229
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQ 136
PGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R
Sbjct: 3 PGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNLAMNQAIKIRDPKKRFNA 62
Query: 137 ILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQR 196
+ ACKTK CE + + E ++ GCG QPT+ DG+ + +K
Sbjct: 63 VWNACKTKMICETDNS---------EEENTDSPKRGGCGHTQPTVRRDGLKLWGTWK--H 111
Query: 197 KKNDDQGQLPE 207
KN D+ PE
Sbjct: 112 NKNFDENDQPE 122
>gi|222445206|ref|ZP_03607721.1| hypothetical protein METSMIALI_00829 [Methanobrevibacter smithii
DSM 2375]
gi|261350232|ref|ZP_05975649.1| DNA-directed RNA polymerase subunit A [Methanobrevibacter smithii
DSM 2374]
gi|222434771|gb|EEE41936.1| DNA-directed RNA polymerase subunit A' [Methanobrevibacter smithii
DSM 2375]
gi|288861018|gb|EFC93316.1| DNA-directed RNA polymerase subunit A [Methanobrevibacter smithii
DSM 2374]
Length = 894
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ K++ + F ++SP++IR+MSV +I+ T E G P+ GL D LG ID KC +C
Sbjct: 5 IKKIKQINFGLMSPEDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVIDPSLKCRSCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
GEC GHFG +ELA+P+ H+GF + I+R C C ++L +D+ FK KI+
Sbjct: 65 YRGGECQGHFGSIELARPVIHVGFGDIIHKILRSTCNECGRVLL-TDDEIFKYTEKIKDA 123
Query: 131 KSRLEQI 137
++ E +
Sbjct: 124 QNHHENL 130
>gi|150399424|ref|YP_001323191.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
gi|1173129|sp|P41556.1|RPOA1_METVS RecName: Full=DNA-directed RNA polymerase subunit A'
gi|505292|emb|CAA51728.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|150012127|gb|ABR54579.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
Length = 889
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP++IR MSV +I T + G P+ GGL D RLG ID C++CS +G C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+K + HIGF K + +++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTE 112
>gi|300394238|gb|ADK11745.1| DNA-directed RNA polymerase II subunit one [Leucogyrophana
arizonica]
Length = 257
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHVELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE DE G D EEP +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMVCE-SDEPKEEGDNG-DAEEP-KKGHGGCGHQQPLVRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK R K+DD+
Sbjct: 116 YK--RPKDDDE 124
>gi|300394242|gb|ADK11747.1| DNA-directed RNA polymerase II subunit one [Leucogyrophana
arizonica]
Length = 256
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHVELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE DE G D EEP +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMVCE-SDEPKEEGDNG-DAEEP-KKGHGGCGHQQPLVRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK R K+DD+
Sbjct: 116 YK--RPKDDDE 124
>gi|300394228|gb|ADK11740.1| DNA-directed RNA polymerase II subunit one [Gomphidius roseus]
Length = 160
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 79/130 (60%), Gaps = 8/130 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE DE G D +EP +K GCG +QP + +G+ + +
Sbjct: 59 ARMAVVWSHCKTKMVCE-TDEPKEEGAEG-DADEP-KKGHGGCGHIQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDD 201
YK + ++DD
Sbjct: 116 YKRPKDEDDD 125
>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
Length = 1020
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC K+L DE + +F AL+ R PK R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKVLVDESNPQFANALRYRDPKKRF 60
Query: 135 EQILCACKTKNKCEGG-------DEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
+ I CK K C+ ++ D+LS G + GCG QP + +G+
Sbjct: 61 DAIWRICKPKLICDSDQPQTDFPEDSDILSKAGMK-----KPSHGGCGNAQPDVRREGLK 115
Query: 188 MIAEYKAQRKKNDD-QGQLPE 207
+ +K ++ +D+ QG + E
Sbjct: 116 LWGTWKMKKTDDDEHQGAITE 136
>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
Length = 1015
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FHIGFM ++ VC NC KILADE + + A + R PK R
Sbjct: 1 ECPGHFGHIELAVPVFHIGFMSKTKKLLEVVCHNCGKILADESEPEMAEACRYRDPKKRF 60
Query: 135 EQILCACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
I C+ K CE GD+ ++ D + + GCG QP + +G+ +
Sbjct: 61 NAIWTLCRKKTVCETTVAGDDENM------DKPKEPKHDHGGCGNRQPQIRREGLKLTGT 114
Query: 192 YKAQRKKNDDQGQLPE 207
+KA++ ++ GQ E
Sbjct: 115 WKAEKGDEENDGQQAE 130
>gi|110629954|gb|ABG80493.1| RNA polymerase II largest subunit [Cortinarius haasii]
Length = 224
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH+GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHLGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ I CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVIWAHCKTKTTCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQVRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|395646424|ref|ZP_10434284.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
DSM 4140]
gi|395443164|gb|EJG07921.1| DNA-directed RNA polymerase subunit A' [Methanofollis liminatans
DSM 4140]
Length = 880
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP ++ K+ +F +LSP EIR+MSV +I T + G P + GL DL LG ID +C
Sbjct: 3 SPKRIGKI---EFGLLSPKEIRQMSVRKIIWADTYDDDGYPYSQGLMDLHLGVIDPGMRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
+TC+ +CPGHFGH+ELAKP+ H+G+ + + ++R C +C ++L
Sbjct: 60 KTCAQKASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVSCRSCGRLL 106
>gi|242073562|ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 89/137 (64%), Gaps = 3/137 (2%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ ++FS+LS EIRK + ++ + + M P+ GL D R+G +KR KC TC
Sbjct: 23 RIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPNGLLDPRMGVPNKREKCSTCHGE 82
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+CPGHFG+L+LA P+F++GF +L +++C+C +CS++L E+D + + K+R+P++
Sbjct: 83 FSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLFEKDRR-EFLKKMRNPRA 141
Query: 133 -RLEQILCACKTKNKCE 148
L++ K ++KC+
Sbjct: 142 DALQKSATMKKVRDKCK 158
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GF+ + ++ VC NC KIL DE + F AL+ R PK R
Sbjct: 1 ECPGHFGHIELAAPVFHVGFLTKIKKLLETVCHNCGKILVDESNPAFLEALRSRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ I CK K CE +D +EP R GCG +QP + + + + +KA
Sbjct: 61 DMIWRLCKPKLICETSMPLD--DDHSEKTKEP-RHDHGGCGNIQPEVRREALKLTGTWKA 117
Query: 195 QRKKNDDQGQLPE--PVERKQTLTAER 219
Q+ ++ + Q E P+ + L R
Sbjct: 118 QKGDDEHEAQQAEKKPITPQMALNVFR 144
>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
Length = 1754
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 54/228 (23%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTE------------IDHGKTTERGMPMAGGL 52
F S ++ +++ +QF I++P+E+R+ SVT+ + +T G P+ GG+
Sbjct: 24 FGHSTARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYETYMAGQPVYGGV 83
Query: 53 SDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI 112
+D RLG I + PG+FGH++LA+P++H GF+ L +RCVCF+CS+I
Sbjct: 84 NDPRLGDIHDKSD-----------PGYFGHIDLARPVYHYGFLDVTLKALRCVCFHCSRI 132
Query: 113 LADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS 172
++ + KFK A I++ K RL + + K +C+
Sbjct: 133 TVEDTEFKFKKARGIKNRKRRLNAMHELIRPKKRCD------------------------ 168
Query: 173 GCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLP-EPVERKQTLTAER 219
C QP T G+++ EY D+ ++P ++KQ +A++
Sbjct: 169 HCNGFQPKYTKVGLHVEIEYA------DEMERMPGTSGDKKQFFSAQK 210
>gi|169247144|gb|ACA51463.1| RNA polymerase II largest subunit, partial [Candida chilensis]
Length = 230
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + +C +C K+L DE + + A+KIR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKACESICMHCGKLLLDESNPQMAAAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
ACKTK CE D + + + R+SGCG QPT+ DG+ + +K +
Sbjct: 61 WNACKTKMVCESDPAED------ENSPDEKKHRRSGCGNFQPTVRKDGLRLWGTWKKDKS 114
Query: 198 KNDDQ 202
DD+
Sbjct: 115 YGDDE 119
>gi|327242113|gb|AEA40835.1| RNA polymerase II largest subunit [Pentatrichomonas hominis]
Length = 1721
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 68/121 (56%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECP 77
+ F + P+E++K + EI + E G + GGLSDLR+GT ++C TC ++ CP
Sbjct: 14 IDFGLFDPEEVKKFAACEITKPQNYENGKIVTGGLSDLRMGTQSPEYRCRTCGQDLQNCP 73
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFG++ LA+P FHIGF + I++ VC C ++L D + + + K R +I
Sbjct: 74 GHFGYINLAEPFFHIGFSDKVYKILQMVCHKCGRLLVSYSDPEVQYIVTHFKGKDRFTRI 133
Query: 138 L 138
Sbjct: 134 F 134
>gi|448307075|ref|ZP_21496976.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
10635]
gi|445596622|gb|ELY50707.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
10635]
Length = 973
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R +SVT++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 12 IQFGLMDPETYRDLSVTKVITADTYDDDGFPIDMGLMDTRLGVIDPGLECPTCGQHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALK-----IRHP 130
PGHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E ++F+ L R P
Sbjct: 72 PGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDEKEEFRERLAEAKRLSRDP 131
Query: 131 KSRLEQILCACKTKNKCEGGDEI 153
+ L+ + + K++C E+
Sbjct: 132 QDVLKAAIRQARKKDRCPHCGEV 154
>gi|300394272|gb|ADK11762.1| DNA-directed RNA polymerase II subunit one [Serpula incrassata]
Length = 232
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF--AEKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + G D +EP +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWSHCKTKMICETDEPKEETE--GVDNDEP-KKGHGGCGHQQPVIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 116 YK--KPKDDDE 124
>gi|68563809|gb|AAY99043.1| RNA polymerase II largest subunit [Cortinarius neolangei]
Length = 232
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +
Sbjct: 59 NRMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQGQLPEPVER 211
YK + K +DD+ + +P +R
Sbjct: 116 YK-KTKDDDDEVKSMQPDKR 134
>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
Length = 1017
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH GF+ + I+ VC NC K+L DE + FK A I+ PK R
Sbjct: 1 ECPGHFGHIELAVPVFHAGFVTKVKKILESVCHNCGKLLDDERNPHFKAACNIKDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR-KRKSGCGALQPTLTIDGMNMIAEYK 193
+ I CK K CE + D G + + L+ K GCG +QP + D + + +K
Sbjct: 61 DAIHKLCKPKMVCEPDIQDDGNDDFGGNPKAKLKVKGHGGCGNIQPEIRRDALRLTGTWK 120
Query: 194 AQRKKNDDQGQLPE 207
+ + ++ + PE
Sbjct: 121 LPKGEEQEEDKGPE 134
>gi|300394244|gb|ADK11748.1| DNA-directed RNA polymerase II subunit one [Leucogyrophana
lichenicola]
Length = 252
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 9/131 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPAF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE DE G D EE ++K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMVCE-TDEPPKEDGEGADPEE-IKKGHGGCGHQQPQIRKEGLKLFVQ 116
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 117 YK--KPKDDDE 125
>gi|308800888|ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116061779|emb|CAL52497.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1406
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 84/139 (60%), Gaps = 8/139 (5%)
Query: 5 FTFSPFKVA----KVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLG 58
FT PF A K+R V+FS++S EI + V + + + PM G+ D R+G
Sbjct: 21 FTKIPFAPASTPRKIRSVKFSLMSSSEIARAGVFHVFERNLYQMPQRTPMVNGILDPRMG 80
Query: 59 TIDKRF-KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
T DKR +C TC +M +C GHFG+++L P+FHIG+ K ++++++CVC CS+IL + E
Sbjct: 81 TTDKRGGECATCRGSMVDCAGHFGYIKLELPVFHIGYFKNIISVLQCVCKGCSRILLN-E 139
Query: 118 DDKFKLALKIRHPKSRLEQ 136
DD+ + R+P+ L Q
Sbjct: 140 DDQATFLKRYRNPRLELTQ 158
>gi|300394266|gb|ADK11759.1| DNA-directed RNA polymerase II subunit one [Rhizopogon nigrescens]
Length = 232
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 8/130 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE DE G D +EP +K GCG +QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMVCE-TDEPKEEGAEG-DADEP-KKGHGGCGHVQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDD 201
YK + +++D
Sbjct: 116 YKRPKDEDED 125
>gi|156937038|ref|YP_001434834.1| DNA-directed RNA polymerase subunit A' [Ignicoccus hospitalis
KIN4/I]
gi|156566022|gb|ABU81427.1| DNA-directed RNA polymerase, subunit A' [Ignicoccus hospitalis
KIN4/I]
Length = 889
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGT 59
M F +P ++ ++F ILSPDEIRKM+V + + E GMP+ GG+ D R+G
Sbjct: 1 MPQRFRLAPRADKIIKEIKFGILSPDEIRKMAVVAVVTDQAYDEAGMPVEGGIMDPRMGV 60
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEED 118
+C TC + + +CPGHFG++EL KP+ H F+ + +R C C ++ L+DEE
Sbjct: 61 TSPGQRCPTCGNTLHDCPGHFGYIELVKPVIHYEFVPHIYDALRATCRVCGRVKLSDEEI 120
Query: 119 DKF 121
DKF
Sbjct: 121 DKF 123
>gi|110669647|gb|ABG81918.1| RNA polymerase II largest subunit, partial [Peltula umbilicata]
Length = 388
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC K+L DE + +F AL+ R PK R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMSKIKKLLEMVCHNCGKLLVDESNPQFADALRYRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR--KSGCGALQPTLTIDGMNMIAEY 192
+ + CK K CE +D G D +P K+ GCG +QP + +G+ + +
Sbjct: 61 DAVWRLCKPKMLCESDTTLDE-DFGGDDMTKPPVKKFNHGGCGNVQPEVRREGLRLWGTW 119
Query: 193 KAQRKKNDDQGQ 204
K + + ++ Q
Sbjct: 120 KLPKDEANEGSQ 131
>gi|154151472|ref|YP_001405090.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
gi|154000024|gb|ABS56447.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
Length = 879
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP ++ K+ +F +LSP EIR+MSV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRIGKI---EFGLLSPKEIREMSVRKIIWADTYDDDGFPYPQGLMDLNLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
+TC +CPGHFGH+ELAKP+ H+G+ + + ++R C +C ++L
Sbjct: 60 KTCDQKASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCGRLL 106
>gi|125657578|gb|ABN48852.1| RNA polymerase II largest subunit [Globigerinita glutinata]
Length = 359
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 69/109 (63%), Gaps = 10/109 (9%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL-ADEEDDKFKLALKIRHPKSR 133
ECPGHFGH+ELA+P +H+GF+ L ++RCVC+ CS +L AD D FK AL+I P+ R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLPVTLRVLRCVCYYCSSLLCADPNSDAFKAALRIPSPRER 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQP 179
L +IL C+ K C GD+ID DG+ ++ + SGCG QP
Sbjct: 61 LIEILHLCEKKKFCGSGDKID------EDGDNENKEEENVYSGCGHAQP 103
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 11/140 (7%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHPKSRLEQILC 139
H+ELAKP+FHIGF+ + I+RCVCF CSK+L D + K K L+ +P+ RL +
Sbjct: 1 HIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKIKEILSKSKAYPRKRLVAVYD 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKN 199
CK++ CEGGDE+D L E +K GCG QP + G+ +IAE+K N
Sbjct: 61 LCKSRKVCEGGDEMDNAKLGEETQEGDQKKGHGGCGRYQPKIKRTGLELIAEWK---DTN 117
Query: 200 DDQGQLPEPVERKQTLTAER 219
+D E+K LTA+R
Sbjct: 118 EDSQ------EKKIVLTADR 131
>gi|77176713|gb|ABA64471.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 411
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 91 HIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGG 150
HIGF+ T+L ++RCVCFNCSKIL D+ D +FK A +I+ P+++L ++ CK+K+ CEGG
Sbjct: 1 HIGFLNTILKVLRCVCFNCSKILCDKNDVRFKAAQRIKRPEAKLRAVMDICKSKSMCEGG 60
Query: 151 DEIDV-LSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQ 202
+E+D+ +SL ++ ++ GCG QP + DG+ + AE+K +N ++
Sbjct: 61 EELDMNVSLDPAAADKAGVPKRVGCGNPQPKIMKDGLKLTAEFKKTLDENQEK 113
>gi|384492086|gb|AFH96448.1| RNA polymerase II subunit 1, partial [Morchella snyderi]
Length = 240
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNSEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEEASQ 129
>gi|408691118|gb|AFU81931.1| RNA polymerase II subunit 1, partial [Morchella snyderi]
Length = 242
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNSEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKPILPSE 139
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
++FS+ SP E+RK SV EI +T E GMP+ GGL D RLGT++ KC TC + +C
Sbjct: 11 IKFSVWSPTEVRKFSVAEITAPETYDEDGMPVQGGLMDNRLGTLEPGQKCATCGNTSAKC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
PGHFGH+ELA+P+ HI F+ + ++ C +C++I + E+
Sbjct: 71 PGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIKLEPEE 112
>gi|432330443|ref|YP_007248586.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
gi|432137152|gb|AGB02079.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
Length = 879
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F +LSP EIR+MSV +I T + G P GL DL LG ID +C+TC
Sbjct: 6 RIGQIEFGLLSPKEIREMSVRKIIWADTYDDDGFPYPQGLMDLNLGVIDPGLRCKTCDQK 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+CPGHFGH+ELAKP+ H+G+ + + ++R C C ++L E+
Sbjct: 66 ASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRACGRVLLSPEE 111
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHPKSRLEQILC 139
H+ELAKP+FH+ F+ + IMRCVCF CSK+L D E +K K L +P+ RL +
Sbjct: 1 HIELAKPVFHVAFLVKTIKIMRCVCFFCSKLLVDPESNKMKDILGKSKGYPQKRLAHVYD 60
Query: 140 ACKTKNKCEGGDEIDVLS---LLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQR 196
CKT+ C+GGDE+D + G EE K GCG QP L G+ ++AE+K
Sbjct: 61 LCKTRKVCDGGDEMDKKNQDPTAGESTEENAPKGHGGCGRYQPKLRRTGLEIVAEWKNIN 120
Query: 197 KKNDDQGQLPEPVERKQTLTAER 219
+ E ERK ++AER
Sbjct: 121 E---------ESQERKMIVSAER 134
>gi|386001093|ref|YP_005919392.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|312183603|gb|ADQ42371.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|357209149|gb|AET63769.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
Length = 878
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++SP E R+MSV +I T + G P+ GL D RLG ID +C +C
Sbjct: 8 RIGKISFGLISPQEFRRMSVVKIITADTYDDDGFPIEMGLMDPRLGVIDPGLRCRSCGGR 67
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKL 123
GECPGHFGH++L P+ H+GF K + I+R +C +CS+++ E + + L
Sbjct: 68 PGECPGHFGHIDLIAPVIHVGFAKLIRKILRAICRDCSRLMLLENEKRMYL 118
>gi|408691158|gb|AFU81951.1| RNA polymerase II subunit 1, partial [Morchella rufobrunnea]
gi|408691238|gb|AFU81991.1| RNA polymerase II subunit 1, partial [Morchella rufobrunnea]
gi|408691258|gb|AFU82001.1| RNA polymerase II subunit 1, partial [Morchella rufobrunnea]
Length = 241
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSACDSDNTTGDEENNFGEDTNTNPDKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEEASQ 129
>gi|408691116|gb|AFU81930.1| RNA polymerase II subunit 1, partial [Morchella snyderi]
Length = 242
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKPILPSE 139
>gi|384492082|gb|AFH96446.1| RNA polymerase II subunit 1, partial [Morchella populiphila]
Length = 240
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTSGDEENNFGEDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKSILPSE 139
>gi|408691114|gb|AFU81929.1| RNA polymerase II subunit 1, partial [Morchella punctipes]
gi|408691144|gb|AFU81944.1| RNA polymerase II subunit 1, partial [Morchella punctipes]
gi|408691162|gb|AFU81953.1| RNA polymerase II subunit 1, partial [Morchella punctipes]
gi|408691166|gb|AFU81955.1| RNA polymerase II subunit 1, partial [Morchella punctipes]
gi|408691168|gb|AFU81956.1| RNA polymerase II subunit 1, partial [Morchella punctipes]
gi|408691184|gb|AFU81964.1| RNA polymerase II subunit 1, partial [Morchella punctipes]
Length = 241
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTSGDEENNFGEDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKSILPSE 139
>gi|310914371|emb|CBH31021.1| RNA polymerase II largest subunit, partial [Millerozyma farinosa]
Length = 190
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQ 136
P FGH+ELAKP+FHIGF+ + + C+C +C K+L DE + A+KIR PK R
Sbjct: 4 PRAFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAMAQAIKIRDPKKRFNA 63
Query: 137 ILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQR 196
+ CK K CE DVLS P+ + + GCG QPT+ DG+ + +K +
Sbjct: 64 VWSLCKAKMICEA----DVLSNENDPNSAPVTQGRGGCGHTQPTVRRDGLKLWGTWK--Q 117
Query: 197 KKNDDQGQLPE 207
KN ++ + PE
Sbjct: 118 NKNFEENEQPE 128
>gi|408691156|gb|AFU81950.1| RNA polymerase II subunit 1, partial [Morchella sp. strain M722]
Length = 241
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKAILPSE 139
>gi|384492084|gb|AFH96447.1| RNA polymerase II subunit 1, partial [Morchella importuna]
Length = 240
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKAILPSE 139
>gi|68563753|gb|AAY99015.1| RNA polymerase II largest subunit [Cortinarius aurilicis]
Length = 232
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHXGFIVKVKKILESICVNCGKLKADISDPNF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +
Sbjct: 59 NRMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQGQLPEPVER 211
YK + K +DD+ + +P +R
Sbjct: 116 YK-KPKDDDDEVKSLQPDKR 134
>gi|408691210|gb|AFU81977.1| RNA polymerase II subunit 1, partial [Morchella importuna]
gi|408691228|gb|AFU81986.1| RNA polymerase II subunit 1, partial [Morchella importuna]
gi|408691260|gb|AFU82002.1| RNA polymerase II subunit 1, partial [Morchella importuna]
gi|408691298|gb|AFU82021.1| RNA polymerase II subunit 1, partial [Morchella importuna]
Length = 241
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKAILPSE 139
>gi|408691160|gb|AFU81952.1| RNA polymerase II subunit 1, partial [Morchella angusticeps]
gi|408691176|gb|AFU81960.1| RNA polymerase II subunit 1, partial [Morchella septentrionalis]
gi|408691182|gb|AFU81963.1| RNA polymerase II subunit 1, partial [Morchella septentrionalis]
gi|408691190|gb|AFU81967.1| RNA polymerase II subunit 1, partial [Morchella septentrionalis]
gi|408691290|gb|AFU82017.1| RNA polymerase II subunit 1, partial [Morchella snyderi]
gi|408691302|gb|AFU82023.1| RNA polymerase II subunit 1, partial [Morchella snyderi]
Length = 241
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEEASQ 129
>gi|300394286|gb|ADK11769.1| DNA-directed RNA polymerase II subunit one [Tapinella
atrotomentosa]
Length = 268
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + ++ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKVLECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + G + +EP +K GCG QP + +G+ + +
Sbjct: 59 ARMSIVWSHCKTKMTCETDEPKEEND--GAENDEP-KKGHGGCGHQQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK R K+DD+
Sbjct: 116 YK--RPKDDDE 124
>gi|408691120|gb|AFU81932.1| RNA polymerase II subunit 1, partial [Morchella snyderi]
gi|408691122|gb|AFU81933.1| RNA polymerase II subunit 1, partial [Morchella brunnea]
Length = 242
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEEASQ 129
>gi|384492088|gb|AFH96449.1| RNA polymerase II subunit 1, partial [Morchella brunnea]
Length = 240
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEEASQ 129
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
A V ++F ILSPD IRKMSV EI T E G+P+ + D RLGT++ +C+TC +
Sbjct: 5 ASVAGIRFGILSPDLIRKMSVAEIISPDTYDEDGLPIPTSVMDPRLGTLEPGQRCKTCGN 64
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
CPGHFG +EL P+ H+GF KT+ +++ C +C +IL E+D K
Sbjct: 65 TYLGCPGHFGRIELPVPVIHVGFAKTIYELLKSTCRSCGRILLPEDDCK 113
>gi|357434296|gb|AET79554.1| RPB1, partial [Lasiosphaeris sp. 5 ANM-2011]
Length = 247
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPTASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQRKKNDDQG 203
+ + DD+G
Sbjct: 121 ETK----DDEG 127
>gi|357434260|gb|AET79536.1| RPB1, partial [Lasiosphaeris sp. 2 ANM-2011]
gi|357434262|gb|AET79537.1| RPB1, partial [Lasiosphaeris sp. 2 ANM-2011]
gi|357434276|gb|AET79544.1| RPB1, partial [Lasiosphaeris sp. 2 ANM-2011]
gi|357434278|gb|AET79545.1| RPB1, partial [Lasiosphaeris sp. 2 ANM-2011]
gi|357434282|gb|AET79547.1| RPB1, partial [Lasiosphaeris sp. 2 ANM-2011]
Length = 247
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQRKKNDDQG 203
+ + DD+G
Sbjct: 121 ETK----DDEG 127
>gi|68563795|gb|AAY99036.1| RNA polymerase II largest subunit [Cortinarius lilacinovelatus]
Length = 232
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPSF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +
Sbjct: 59 NRMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQGQLPEPVER 211
YK + K +DD+ + +P +R
Sbjct: 116 YK-KTKDDDDEVKSMQPDKR 134
>gi|357434298|gb|AET79555.1| RPB1, partial [Lasiosphaeris sp. 5 ANM-2011]
Length = 247
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPTASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQRKKNDDQG 203
+ + DD+G
Sbjct: 121 ETK----DDEG 127
>gi|357434266|gb|AET79539.1| RPB1, partial [Lasiosphaeris sp. 3 ANM-2011]
gi|357434268|gb|AET79540.1| RPB1, partial [Lasiosphaeris sp. 1 ANM-2011]
gi|357434284|gb|AET79548.1| RPB1, partial [Lasiosphaeris sp. 3 ANM-2011]
gi|357434286|gb|AET79549.1| RPB1, partial [Lasiosphaeris sp. 3 ANM-2011]
gi|357434288|gb|AET79550.1| RPB1, partial [Lasiosphaeris sp. 4 ANM-2011]
gi|357434290|gb|AET79551.1| RPB1, partial [Lasiosphaeris sp. 4 ANM-2011]
gi|357434294|gb|AET79553.1| RPB1, partial [Lasiosphaeris sp. 1 ANM-2011]
Length = 247
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQRKKNDDQG 203
+ + DD+G
Sbjct: 121 ETK----DDEG 127
>gi|297527624|ref|YP_003669648.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
gi|297256540|gb|ADI32749.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
Length = 886
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F ILSP+EIRKMSVT I + + G P+ GG+ D RLG I+ R C C +
Sbjct: 8 RISAIKFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIEPREVCPVCGNT 67
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
CPGHFGH+ELA+P+ H+ F+K + ++ C C +I EE+ K L L
Sbjct: 68 RESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEEERKKYLEL 120
>gi|357434270|gb|AET79541.1| RPB1, partial [Lasiosphaeris sp. 5 ANM-2011]
gi|357434300|gb|AET79556.1| RPB1, partial [Lasiosphaeris sp. 5 ANM-2011]
Length = 247
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPTASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQRKKNDDQG 203
+ + DD+G
Sbjct: 121 ETK----DDEG 127
>gi|357434292|gb|AET79552.1| RPB1, partial [Lasiosphaeris sp. 4 ANM-2011]
Length = 247
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQRKKNDDQG 203
+ + DD+G
Sbjct: 121 ETK----DDEG 127
>gi|68563817|gb|AAY99047.1| RNA polymerase II largest subunit [Cortinarius olearioides]
Length = 232
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 5/138 (3%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNFGDKIRHIRDPKNR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 MAVVWAHCKTKMVCEPDDPKEEGA--DPDTEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK 117
Query: 194 AQRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 118 -KTKDDDDEVKSMQPDKR 134
>gi|300394290|gb|ADK11771.1| DNA-directed RNA polymerase II subunit one [Tapinella panuoides]
Length = 250
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + ++ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKVLECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + G D +EP +K GCG QP + +G+ + +
Sbjct: 59 ARMAAVWSHCKTKMICETDEPKEEND--GVDNDEP-KKGHGGCGHQQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 116 YK--KPKDDDE 124
>gi|300394288|gb|ADK11770.1| DNA-directed RNA polymerase II subunit one [Tapinella
atrotomentosa]
Length = 246
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + ++ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKVLECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + G + +EP +K GCG QP + +G+ + +
Sbjct: 59 ARMSIVWSHCKTKMTCETDEPKEEND--GAENDEP-KKGHGGCGHQQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK R K+DD+
Sbjct: 116 YK--RPKDDDE 124
>gi|169247216|gb|ACA51499.1| RNA polymerase II largest subunit, partial [Candida savonica]
Length = 230
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 17/134 (12%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLFDETNVAFAQAVKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRK-----RKSGCGALQPTLTIDGMNMIAEYK 193
ACKTK CE DV+S EE R + GCG QPT+ DG+ + +K
Sbjct: 61 NACKTKMVCEA----DVIS------EEDQRAGRITPGRGGCGHTQPTVRRDGLKLWGTWK 110
Query: 194 AQRKKNDDQGQLPE 207
+ KN D+ PE
Sbjct: 111 --QNKNFDENDQPE 122
>gi|169247260|gb|ACA51521.1| RNA polymerase II largest subunit, partial [Wickerhamia
fluorescens]
Length = 230
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDENNVTMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
ACKTK CE +S + G +K GCG QPT+ DG+ + +K K
Sbjct: 61 AACKTKMVCETD-----MSEEENAGLTDATPKKGGCGHTQPTIRRDGLKLWGTWK--HNK 113
Query: 199 NDDQGQLPE 207
N D+ + PE
Sbjct: 114 NFDENEQPE 122
>gi|169247212|gb|ACA51497.1| RNA polymerase II largest subunit, partial [Candida santamariae
var. membranifaciens]
Length = 219
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH++LAKP+FHIGF+ + + CVC +C K+L DE + A++IR PK R +
Sbjct: 1 HFGHIDLAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPIMAQAIRIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE D G E + GCG QPT+ DG+ + +K + K
Sbjct: 61 SVCKTKMICEADSVDDEDQQQGQSAAEQKAPGRGGCGHTQPTVRRDGLKLWGTWK--QNK 118
Query: 199 NDDQGQLPE 207
N D+ + PE
Sbjct: 119 NFDENEQPE 127
>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 89/137 (64%), Gaps = 3/137 (2%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ ++FS+ S +E+R+ + ++ + + M P+ GL D R+G +K +C TC +
Sbjct: 23 RIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPNGLLDTRMGAANKLGECSTCHGS 82
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
ECPGHFG+L+LA P+F++GF +L +++C+C +CS++L E+ D+ + K+R+PK+
Sbjct: 83 FAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEK-DRLEFLKKMRNPKA 141
Query: 133 R-LEQILCACKTKNKCE 148
L++ K ++KC+
Sbjct: 142 DPLQKSAIMKKVRDKCK 158
>gi|68563837|gb|AAY99057.1| RNA polymerase II largest subunit [Cortinarius sp. JV01-574]
Length = 232
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +
Sbjct: 59 NRMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQGQLPEPVER 211
YK + K +DD+ + +P +R
Sbjct: 116 YK-KPKDDDDEVKSLQPDKR 134
>gi|169247218|gb|ACA51500.1| RNA polymerase II largest subunit, partial [Candida savonica]
Length = 230
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 17/134 (12%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + F A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLFDETNVAFAQAVKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRK-----RKSGCGALQPTLTIDGMNMIAEYK 193
ACKTK CE DV+S EE R + GCG QPT+ DG+ + +K
Sbjct: 61 NACKTKMVCEA----DVIS------EEDQRAGRITPGRGGCGHTQPTVRRDGLKLWGTWK 110
Query: 194 AQRKKNDDQGQLPE 207
+ KN D+ PE
Sbjct: 111 --QNKNFDENDQPE 122
>gi|352682852|ref|YP_004893376.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
gi|350275651|emb|CCC82298.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
Length = 883
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 11/130 (8%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCE 67
P K+ ++ ++F ILSPD IR+ S EI + E G+P+ GL D RLG + KCE
Sbjct: 10 PTKI--IKGIKFGILSPDLIRRYSTLEITTSEIYDEGGLPVRSGLMDRRLGVAEPGAKCE 67
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC + CPGHFGH+ELAKP+ H+ F + + ++R C +C +I+ +E+ I
Sbjct: 68 TCGQSYDVCPGHFGHIELAKPVIHVEFARFIYDVLRATCPHCGRIMLKDEE--------I 119
Query: 128 RHPKSRLEQI 137
R RL+++
Sbjct: 120 RRYSERLQRL 129
>gi|297619552|ref|YP_003707657.1| DNA-directed RNA polymerase subunit A' [Methanococcus voltae A3]
gi|297378529|gb|ADI36684.1| DNA-directed RNA polymerase subunit A' [Methanococcus voltae A3]
Length = 888
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 10 FKVAK-VRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCE 67
F V K + + F +LSP++ R MSV +I T + G P+ GGL D RLG ID C+
Sbjct: 4 FDVPKEIGNITFGLLSPEQTRIMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCK 63
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
+C +G CPGHFGH+EL+KP+ HIGF K + I++ C +C K+ E
Sbjct: 64 SCGGRVGTCPGHFGHIELSKPVVHIGFAKDIYKILKATCPHCGKVTLSE 112
>gi|222629113|gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 89/137 (64%), Gaps = 3/137 (2%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ ++FS+ S +E+R+ + ++ + + M P+ GL D R+G +K +C TC +
Sbjct: 23 RIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPNGLLDTRMGAANKLGECSTCHGS 82
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
ECPGHFG+L+LA P+F++GF +L +++C+C +CS++L E+ D+ + K+R+PK+
Sbjct: 83 FAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLLMEK-DRLEFLKKMRNPKA 141
Query: 133 R-LEQILCACKTKNKCE 148
L++ K ++KC+
Sbjct: 142 DPLQKSAIMKKVRDKCK 158
>gi|219852750|ref|YP_002467182.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
E1-9c]
gi|219547009|gb|ACL17459.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
E1-9c]
Length = 880
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP ++ K+ +F +LSP EIR MSV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRIGKI---EFGLLSPKEIRTMSVRKIIWADTYDDDGFPYPQGLMDLSLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL 113
+TC +CPGHFGH+ELAKP+ H+G+ + + ++R C C ++L
Sbjct: 60 KTCDQKAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRECGRLL 106
>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
Length = 884
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 5/121 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIR+MSV +I +T E G P++G + D RLG I+ C C + M
Sbjct: 8 IKGIKFGILSPDEIRRMSVVQIVSPETYDEDGTPISGSVMDPRLGAIEPGQTCPICGNTM 67
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
CPGHFGH+ELA P+ ++ ++K + ++R C NC +I ++ E +K+ + LK R+
Sbjct: 68 KACPGHFGHIELALPVINVLYVKHIYDLLRATCANCGRIKVSPSEIEKYMVYLRKLKARY 127
Query: 130 P 130
P
Sbjct: 128 P 128
>gi|169247206|gb|ACA51494.1| RNA polymerase II largest subunit, partial [Candida rhagii]
Length = 230
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 8/130 (6%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ T+ + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIATIKKVCECVCMHCGKLLLDETNPLMAQAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE D +S D ++ + + GCG QPT+ DG+ + +K +
Sbjct: 61 WNTCKTKMICEA----DTIS--EDDRQKVEKPGRGGCGHTQPTVRRDGLKLWGTWK--QN 112
Query: 198 KNDDQGQLPE 207
KN ++ + PE
Sbjct: 113 KNFEENEQPE 122
>gi|384492080|gb|AFH96445.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691134|gb|AFU81939.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691136|gb|AFU81940.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691138|gb|AFU81941.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691140|gb|AFU81942.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691146|gb|AFU81945.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691150|gb|AFU81947.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691152|gb|AFU81948.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691248|gb|AFU81996.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691286|gb|AFU82015.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691294|gb|AFU82019.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691296|gb|AFU82020.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
Length = 241
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEETTQ 129
>gi|124485981|ref|YP_001030597.1| DNA-directed RNA polymerase subunit A' [Methanocorpusculum
labreanum Z]
gi|124363522|gb|ABN07330.1| DNA-directed RNA polymerase, subunit A' [Methanocorpusculum
labreanum Z]
Length = 889
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP ++ K+ +F ILSP IR MSV ++ T + G P GL D LG ID +C
Sbjct: 3 SPKRIGKI---EFGILSPKAIRDMSVCKVIWPDTYDDDGFPYPKGLMDPSLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+TC G+CPGHFGH++LAKP+ H+G+ + + ++R C +C ++L D+E+
Sbjct: 60 KTCGQKQGDCPGHFGHIDLAKPVIHVGYTRLIRKLLRVTCRDCGRLLLDKEE 111
>gi|408691128|gb|AFU81936.1| RNA polymerase II subunit 1, partial [Morchella prava]
gi|408691132|gb|AFU81938.1| RNA polymerase II subunit 1, partial [Morchella prava]
Length = 241
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHD-GEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D G P +K+ GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDTGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEETTQ 129
>gi|68563839|gb|AAY99058.1| RNA polymerase II largest subunit [Cortinarius splendens]
Length = 232
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 83/138 (60%), Gaps = 5/138 (3%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 MAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK 117
Query: 194 AQRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 118 -KTKDDDDEVKSMQPDKR 134
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 11/144 (7%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQ 136
PGHFGH+ELA+P +H+G++K +L +RCVCF+CS+++AD D K + A K + K RLE
Sbjct: 10 PGHFGHIELARPCYHLGYIKEVLMCLRCVCFHCSRLMADPSDYKVQGAQKYKAQK-RLEA 68
Query: 137 ILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMI-AEYKAQ 195
+ C++K +CE ++ + DGE+ GCGALQPT I E++
Sbjct: 69 MHGLCRSKKRCEFATGAELQQAI-MDGEQ--EGAVYGCGALQPTFRRRTAQSIEVEFQP- 124
Query: 196 RKKNDDQGQLPEPVERKQTLTAER 219
D+ +P +RKQ L+A R
Sbjct: 125 -----DEETIPGTGDRKQILSAHR 143
>gi|408691278|gb|AFU82011.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
Length = 144
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHD-GEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D G P +K+ GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDTGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEETTQ 129
>gi|68563755|gb|AAY99016.1| RNA polymerase II largest subunit [Cortinarius barbarorum]
Length = 224
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|110734391|gb|ABG88852.1| RNA polymerase II largest subunit [Punctularia strigosozonata]
Length = 234
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 9/127 (7%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSRLE 135
HFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK R+
Sbjct: 1 HFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPNF--ADKIRHVRDPKKRMA 58
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
+ CK K CE D + G DGEEP++K GCG QP + +G+ + +YK
Sbjct: 59 VVWGHCKGKMVCEADDPKEEGD--GQDGEEPVKKGHGGCGHHQPLIRKEGLKLFVQYK-- 114
Query: 196 RKKNDDQ 202
+ K+DD+
Sbjct: 115 KSKDDDE 121
>gi|68563785|gb|AAY99031.1| RNA polymerase II largest subunit [Cortinarius humolens]
Length = 224
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|408691126|gb|AFU81935.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691130|gb|AFU81937.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691142|gb|AFU81943.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691148|gb|AFU81946.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691154|gb|AFU81949.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691164|gb|AFU81954.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691170|gb|AFU81957.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691172|gb|AFU81958.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691174|gb|AFU81959.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691178|gb|AFU81961.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691180|gb|AFU81962.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691186|gb|AFU81965.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691188|gb|AFU81966.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691194|gb|AFU81969.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691196|gb|AFU81970.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691198|gb|AFU81971.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691202|gb|AFU81973.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691204|gb|AFU81974.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691206|gb|AFU81975.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691216|gb|AFU81980.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691230|gb|AFU81987.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691264|gb|AFU82004.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691266|gb|AFU82005.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691268|gb|AFU82006.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691270|gb|AFU82007.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691272|gb|AFU82008.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691274|gb|AFU82009.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691276|gb|AFU82010.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691280|gb|AFU82012.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691282|gb|AFU82013.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691284|gb|AFU82014.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691288|gb|AFU82016.1| RNA polymerase II subunit 1, partial [Morchella cryptica]
gi|408691292|gb|AFU82018.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691300|gb|AFU82022.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
Length = 241
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHD-GEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D G P +K+ GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDTGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEETTQ 129
>gi|300394252|gb|ADK11752.1| DNA-directed RNA polymerase II subunit one [Leptosporomyces
raunkiaeri]
Length = 233
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 10/131 (7%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHVRDPKA 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEP-LRKRKSGCGALQPTLTIDGMNMIAE 191
R+ + CKTK CE + D G + ++P ++K GCG +QP + +G+ + +
Sbjct: 59 RMAVVWAHCKTKMVCEPDEPKDEND--GAENDDPDVKKGHGGCGHVQPQIRKEGLKLFVQ 116
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 117 YK--KTKDDDE 125
>gi|300394270|gb|ADK11761.1| DNA-directed RNA polymerase II subunit one [Serpula himantioides]
Length = 256
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + G + +EP +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMTCETDEPKEEGE--GAENDEP-KKGHGGCGHQQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 116 YK--KPKDDDE 124
>gi|169247154|gb|ACA51468.1| RNA polymerase II largest subunit, partial [Candida entomophila]
Length = 231
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 11/132 (8%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKLCECVCMHCGKLLLDESNPLMAQAIKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEP--LRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
CKTK CE D +S + E+ L K + GCG QPT+ DGM + +K
Sbjct: 61 WNVCKTKMICEA----DTIS---EEDEQKGVLPKGRGGCGHTQPTVRRDGMKLWGTWK-- 111
Query: 196 RKKNDDQGQLPE 207
+ KN D+ + PE
Sbjct: 112 QSKNFDETEQPE 123
>gi|68563807|gb|AAY99042.1| RNA polymerase II largest subunit [Cortinarius neolangei]
gi|68563811|gb|AAY99044.1| RNA polymerase II largest subunit [Cortinarius neolangei]
gi|68563815|gb|AAY99046.1| RNA polymerase II largest subunit [Cortinarius odorifer]
Length = 231
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|432329279|ref|YP_007247423.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum sp.
MAR08-339]
gi|432135988|gb|AGB05257.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum sp.
MAR08-339]
Length = 895
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++FS+LSP+EIR+MS ++ T + G P+ GL DL +G I+ +C+TC
Sbjct: 11 RINSIKFSLLSPEEIRRMSAVKVITADTYDDDGFPIDKGLMDLHMGVIEPGLRCKTCGGK 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
+ ECPGHFGH+ELA P+ H+GF+K + + C C +I L D+E + +K
Sbjct: 71 VDECPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKLKDDEIEIYK 121
>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
Length = 1016
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GFM + ++ VC NC KIL DE++ F + R PK R
Sbjct: 1 ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEDNPAFADTQRHRDPKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK-----RKSGCGALQPTLTIDGMNMI 189
+ + CK K CE D +D + K R GCG +QP + +G+ +
Sbjct: 61 DAVWRLCKPKLICETSTVED------NDFDSKPEKGKKVSRHGGCGNVQPEVRREGLRLT 114
Query: 190 AEYKAQRKKNDDQGQLPE 207
+KA + +++ Q PE
Sbjct: 115 GTWKAMKGDEENEAQQPE 132
>gi|14915814|gb|AAK73819.1|AF390020_1 RNA polymerase II large subunit, partial [Inocybe lilacina]
Length = 242
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 12/148 (8%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFLVKVKKILESICVNCGKLKADISDPNF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIA 190
+R+ + CKTK+ CE D D G D E KR GCG +QP + +G+ +
Sbjct: 59 TRMGVVWSHCKTKSVCETDDPKDE----GADAESEEAKRGHGGCGHIQPQIRKEGLKLFL 114
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAE 218
+YK + K+D++ +R+ AE
Sbjct: 115 QYK--KTKDDEEEIKSSQTDRRLITPAE 140
>gi|68563833|gb|AAY99055.1| RNA polymerase II largest subunit [Cortinarius saporatus]
Length = 231
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|110629950|gb|ABG80491.1| RNA polymerase II largest subunit [Cortinarius cisticola]
Length = 231
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKTVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|300394248|gb|ADK11750.1| DNA-directed RNA polymerase II subunit one [Leucogyrophana
olivascens]
Length = 237
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 11/131 (8%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHVELARPVFHPGFIVKVKKILECICVNCGKLKADISDPAF--AEKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CK+K CE D G + ++ +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWGICKSKMVCES----DEPKEEGENADDDPKKGHGGCGHQQPQIRKEGLKLFVQ 114
Query: 192 YKAQRKKNDDQ 202
YK R K+DD+
Sbjct: 115 YK--RPKDDDE 123
>gi|408691200|gb|AFU81972.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
Length = 241
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HFGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHD-GEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D G P +K+ GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDTGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEETTQ 129
>gi|300394278|gb|ADK11765.1| DNA-directed RNA polymerase II subunit one [Serpula himantioides]
Length = 232
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + G + +EP +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMTCETDEPKEEGE--GAENDEP-KKGHGGCGHQQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 116 YK--KPKDDDE 124
>gi|68563771|gb|AAY99024.1| RNA polymerase II largest subunit [Cortinarius coerulescentium]
gi|68563773|gb|AAY99025.1| RNA polymerase II largest subunit [Cortinarius coerulescentium]
Length = 231
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHIQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KNKDDDDEVKSLQPDKR 133
>gi|68563841|gb|AAY99059.1| RNA polymerase II largest subunit [Cortinarius splendificus]
Length = 226
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 5/138 (3%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ + CKTK CE D + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 MAVVWAHCKTKMVCEPDDPKE--EGADPDTEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK 117
Query: 194 AQRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 118 -KTKDDDDEVKSMQPDKR 134
>gi|451927572|gb|AGF85450.1| directed RNA polymerase (II) subunit 1 [Moumouvirus goulette]
Length = 1493
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT----ERGMPMAGGLSDLRLGTIDKRFKCE 67
V + V F+I S ++ K S +G T P+ GG+ D RLG + R +C
Sbjct: 15 VEPITAVAFTIYSNTDVVKYSAISDPNGITVAEIQNNNEPIQGGVIDRRLGVTESRTECA 74
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC +CPGHFGH++ +P+FH GF+ + I+ CVC C+K+L + LK
Sbjct: 75 TCGETALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCVCIRCNKLLVHRNEAAIDRLLKN 134
Query: 128 RHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN 187
+H K R +I CK C+ K GCG ++I+ N
Sbjct: 135 KHGKQRFAEIRSICKGITHCQ--------------------KDGYGCGTPVHKISIEKRN 174
Query: 188 ----MIAEYKAQRKKNDDQ-GQL 205
++AE + + DDQ G+L
Sbjct: 175 CSIYLLAEPVKRSDEYDDQTGEL 197
>gi|357434264|gb|AET79538.1| RPB1, partial [Lasiosphaeris sp. 3 ANM-2011]
Length = 230
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K++ ++ VC NCSK+LAD + +F A+KI PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKSVKKLLEIVCHNCSKVLADRSEPEFAAAMKIXDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 PRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVXQQALTLWANL 120
Query: 193 KAQRKKNDDQG 203
+ + DD+G
Sbjct: 121 ETK----DDEG 127
>gi|449519486|ref|XP_004166766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like,
partial [Cucumis sativus]
Length = 286
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 86/133 (64%), Gaps = 10/133 (7%)
Query: 5 FTFSPF--KVAKVRMVQFSILSPDEIRKMSVTEIDHG---KTTERGMPMAGGLSDLRLGT 59
FT P+ V +++QF+ S EI K++ ++ G TT + P+ GGL D R+G
Sbjct: 11 FTKQPYIEDVGPRKIMQFTTFSGAEISKLAEVQVYKGLYYDTTRK--PIDGGLLDPRMGP 68
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
+K KC TC +N G+CPGH+G++ LA P+F++G+ T+L I++C+C +CS+IL +E+
Sbjct: 69 ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK-- 126
Query: 120 KFKLAL-KIRHPK 131
FK L K+R+PK
Sbjct: 127 LFKDFLRKMRNPK 139
>gi|374629649|ref|ZP_09702034.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
gi|373907762|gb|EHQ35866.1| DNA-directed RNA polymerase, subunit A' [Methanoplanus limicola DSM
2279]
Length = 881
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
SP +V K+ +F +LSP +IR+ SV +I T + G P GL DL LG ID +C
Sbjct: 3 SPKRVEKI---EFGLLSPKDIRRTSVRKIIWADTYDDDGFPYPQGLMDLHLGVIDPGLRC 59
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+TC + ECPGHFGH+ELAKP+ H+G+ + + ++R C C ++L +++
Sbjct: 60 KTCGNRASECPGHFGHIELAKPVIHVGYTRLIRKLLRVSCRECGRLLLSQDE 111
>gi|300394202|gb|ADK11727.1| DNA-directed RNA polymerase II subunit one [Ceraceomyces borealis]
Length = 232
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + G D EE L+K GCG +QP + + + + +
Sbjct: 59 ARMAIVWNHCKTKMVCEPDEPKEEGD--GADAEE-LKKGHGGCGHIQPLIRKEALKLFVQ 115
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 116 YK--KSKDDDE 124
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 84/145 (57%), Gaps = 20/145 (13%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK-LALKIR-HPKSRLEQILC 139
H+ELAKP+FH+GF+ + I+RCVCF CSK+L + K K + LK + P+ RL I
Sbjct: 1 HIELAKPVFHVGFLTKTIKIIRCVCFYCSKLLVSPNNPKIKEVILKTKGQPRKRLAAIYD 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEE-PLRKRK----SGCGALQPTLTIDGMNMIAEYKA 194
CK KN CEGGDE+D + D E+ L + K GCG QP + G+++ AE+K
Sbjct: 61 LCKGKNICEGGDEMD----MARDQEDLSLSQAKKVGHGGCGRYQPKIRRIGLDLTAEWK- 115
Query: 195 QRKKNDDQGQLPEPVERKQTLTAER 219
N+D ERK TLTAER
Sbjct: 116 --HVNEDSQ------ERKLTLTAER 132
>gi|126465703|ref|YP_001040812.1| DNA-directed RNA polymerase subunit A' [Staphylothermus marinus F1]
gi|126014526|gb|ABN69904.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus
F1]
Length = 886
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F ILSP+EIRKMSVT I + + G P+ GG+ D RLG I+ R C C +
Sbjct: 8 RISAIKFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIEPREVCPVCGNT 67
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
CPGHFGH+ELA+P+ H+ F+K + ++ C C +I E++ K L L
Sbjct: 68 RESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEDERKRYLEL 120
>gi|310914375|emb|CBH31023.1| RNA polymerase II largest subunit, partial [Millerozyma farinosa]
Length = 189
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
GH+ELAKP+FHIGF+ + + C+C +C K+L DE + A+KIR PK R +
Sbjct: 1 LGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAMAQAIKIRDPKKRFNAVWS 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKN 199
CKTK CE DVLS P+ + + GCG QPT+ DG+ + +K + KN
Sbjct: 61 LCKTKMICEA----DVLSNENDPNSAPVTQGRGGCGHTQPTIRRDGLKLWGTWK--QNKN 114
Query: 200 DDQGQLPE 207
++ + PE
Sbjct: 115 FEENEQPE 122
>gi|449462093|ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Cucumis sativus]
Length = 1400
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 82/122 (67%), Gaps = 8/122 (6%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHG---KTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
K++ +QF+ S EI K++ ++ G TT + P+ GGL D R+G +K KC TC
Sbjct: 24 KIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRK--PIDGGLLDPRMGPANKGCKCATCH 81
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL-KIRH 129
+N G+CPGH+G++ LA P+F++G+ T+L I++C+C +CS+IL +E+ FK L K+R+
Sbjct: 82 ANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK--LFKDFLRKMRN 139
Query: 130 PK 131
PK
Sbjct: 140 PK 141
>gi|58395905|gb|AAW72755.1| RNA polymerase II largest subunit [Phanerochaete chrysosporium]
Length = 232
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC ++ AD D F ++ +R PK+R
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADISDPTFADRIRHVRDPKAR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
++ + CK K CE + D + D +EP R GCGA QP + +G+ + +YK
Sbjct: 61 MQVVWNYCKGKMLCEPDEPRDETDNM--DNDEPKRGH-GGCGAAQPQIRKEGLKLFVQYK 117
Query: 194 AQRKKNDDQ 202
R K++D+
Sbjct: 118 --RSKDEDE 124
>gi|296243131|ref|YP_003650618.1| DNA-directed RNA polymerase subunit A' [Thermosphaera aggregans DSM
11486]
gi|296095715|gb|ADG91666.1| DNA-directed RNA polymerase, subunit A' [Thermosphaera aggregans
DSM 11486]
Length = 881
Score = 99.8 bits (247), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCS 70
V +V ++F +LSP+EIRK+SVT+I + G P+ GG+ D RLG I+ C C
Sbjct: 2 VNRVSEIRFGLLSPEEIRKLSVTQIITSDVYDNDGAPIDGGVMDKRLGAIEPGETCPVCG 61
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
+ CPGHFGH+EL KP+ H GF K +L ++ C C +I E++ + LAL
Sbjct: 62 NTRDSCPGHFGHIELTKPVIHAGFAKHILMYLKATCRECGRIKIPEKERQEYLAL 116
>gi|300394234|gb|ADK11743.1| DNA-directed RNA polymerase II subunit one [Hydnomerulius pinastri]
Length = 232
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE + + + D E+P +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMTCETDEPKEEGA--EPDAEDP-KKGHGGCGHQQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDD 201
YK + +++D
Sbjct: 116 YKRPKDEDED 125
>gi|38091168|emb|CAE46438.1| RNA polymerase II largest subunit [Gromia oviformis]
Length = 418
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 24/153 (15%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH++LA PMFH GFM L I+RCVC+ C+ ILAD ++ KF+ +K + HP+ R
Sbjct: 1 ECPGHFGHIDLALPMFHPGFMTVTLKILRCVCYFCANILADPQNSKFQDIIKNVEHPRLR 60
Query: 134 LEQILCACKTKNKC-------EGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGM 186
L + C++ C + GD ++ + +G + SGCG+ P + +
Sbjct: 61 LNALEKLCQSAKSCGATQRDDKAGDSLETSADVG---------QGSGCGSKVPKYRKENI 111
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ AE+ ++N D G +RK LTAE+
Sbjct: 112 KIFAEF----EENSDIGNA---TDRKTELTAEK 137
>gi|357434280|gb|AET79546.1| RPB1, partial [Lasiosphaeris hispida]
gi|357434306|gb|AET79559.1| RPB1, partial [Lasiosphaeris hispida]
Length = 247
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQ 195
+ +
Sbjct: 121 ETK 123
>gi|357434308|gb|AET79560.1| RPB1, partial [Lasiosphaeris hispida]
Length = 247
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQ 195
+ +
Sbjct: 121 ETK 123
>gi|167044137|gb|ABZ08820.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1268
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
V + ++F + SP+EIRK SV+EI +T E GM + GGL D RLGT++ KC TC
Sbjct: 6 VKAIAGIKFCVWSPNEIRKYSVSEITAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE--DD-----KFKL 123
+ CPGHFGH+ELA+P+ HI F+ + ++ C +CS++ +E D+ K+
Sbjct: 66 NTSARCPGHFGHVELAEPVLHIAFIDNIHKLLNATCRSCSRLKVPQEVLDEFLKFKKYSA 125
Query: 124 ALKIRHPKSRLEQILCACKTKNKC 147
+ + K EQI K +C
Sbjct: 126 SFAVISQKRIPEQIFEKAKKSKEC 149
>gi|289596765|ref|YP_003483461.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
gi|289534552|gb|ADD08899.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
Length = 895
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F++LSP+EIR+MS ++ T + G P+ GL DL +G I+ +C+TC
Sbjct: 11 RINSIKFALLSPEEIRRMSAVKVITADTYDDDGFPIDKGLMDLHMGVIEPGLRCKTCGGK 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
+ ECPGHFGH+ELA P+ H+GF+K + + C C +I L D+E + +K
Sbjct: 71 VDECPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKLKDDEIEIYK 121
>gi|68563761|gb|AAY99019.1| RNA polymerase II largest subunit [Cortinarius cf. calochrous
TSJ2002-072]
gi|68563787|gb|AAY99032.1| RNA polymerase II largest subunit [Cortinarius insignibulbus]
gi|68563819|gb|AAY99048.1| RNA polymerase II largest subunit [Cortinarius parasuaveolens]
Length = 231
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|14915812|gb|AAK73818.1|AF390019_1 RNA polymerase II large subunit, partial [Inocybe sindonia]
Length = 242
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIA 190
+R+ + CKTK CE D G D E +KR GCG +QP + +G+ +
Sbjct: 59 TRMGVVWSHCKTKTICES----DEPKEEGADAENEEQKRGHGGCGHIQPQIRKEGLKLFL 114
Query: 191 EYKAQRKKNDDQGQLPEPVER 211
+YK + K DD+ + +P R
Sbjct: 115 QYK-KTKDEDDEIKSSQPDRR 134
>gi|68563757|gb|AAY99017.1| RNA polymerase II largest subunit [Cortinarius caesiocortinatus]
gi|68563823|gb|AAY99050.1| RNA polymerase II largest subunit [Cortinarius prasinocyaneus]
Length = 231
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 85/144 (59%), Gaps = 9/144 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHIQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVERKQTLT 216
K + K +DD+ + +P +R T T
Sbjct: 116 K-KTKDDDDEVKSLQPDKRLITPT 138
>gi|300394206|gb|ADK11729.1| DNA-directed RNA polymerase II subunit one [Coniophora marmorata]
Length = 253
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH+ELA+P+FH GF+ + I+ CVC NC K+ AD D F ++ IR PK R
Sbjct: 1 ECPGHFGHIELARPVFHPGFINKVKKILECVCVNCGKLKADISDPTFADRIRHIRDPKKR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ CK K C E D G+D + +K GCG QP + +G+ + YK
Sbjct: 61 FAAVWAFCKAKMVC----ETDEPKEEGNDEADEPKKGHGGCGHKQPQVRKEGLKLFVNYK 116
Query: 194 AQRKKNDDQGQ 204
A K+D +G+
Sbjct: 117 AD--KDDGEGK 125
>gi|68563793|gb|AAY99035.1| RNA polymerase II largest subunit [Cortinarius lilacinovelatus]
Length = 231
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPSF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|389860841|ref|YP_006363081.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
gi|388525745|gb|AFK50943.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
Length = 880
Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ V+F ILSPDEIR+MSVT I + G P+ GG+ D RLG I+ + C C +
Sbjct: 3 RIKEVKFGILSPDEIRRMSVTNIITSDVYDSDGAPVDGGVMDKRLGAIEPKEVCPICGNT 62
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKF 121
ECPGHFGH+ELAKP+ H GF K + ++ C C ++ E + +
Sbjct: 63 RDECPGHFGHIELAKPVIHAGFAKHIHMYLKTTCRVCGRVKLPENERQL 111
>gi|254169021|ref|ZP_04875859.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
gi|197621991|gb|EDY34568.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
Length = 895
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F++LSP+EIR+MS ++ T + G P+ GL DL +G I+ +C+TC
Sbjct: 11 RINSIKFALLSPEEIRRMSAVKVITADTYDDDGFPIDKGLMDLHMGVIEPGLRCKTCGGK 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
+ ECPGHFGH+ELA P+ H+GF+K + + C C +I L D+E + +K
Sbjct: 71 VDECPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKLKDDEIEIYK 121
>gi|448734900|ref|ZP_21717120.1| DNA-directed RNA polymerase subunit A' [Halococcus salifodinae DSM
8989]
gi|445799530|gb|EMA49909.1| DNA-directed RNA polymerase subunit A' [Halococcus salifodinae DSM
8989]
Length = 984
Score = 99.4 bits (246), Expect = 9e-19, Method: Composition-based stats.
Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 4/207 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F +++P+E R+MS T+I T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGAIDFGLMNPEEYREMSATKIITADTYDDDGYPIDMGLMDPRLGVIDPGLECKTCGQH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
G C GHFGH+ELA P+ H+GF K + ++R C CS++L DE+ ++ + A +++ +
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFTKLMRRLLRGTCRECSRLLLDEQ-ERNEFANRLQRARE 127
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
+ + TK + D + G + + ++ + +Q L + +IAE
Sbjct: 128 LDDDVNDV--TKAAIRQARKKDRCAYCGEEQYDIQHEKPTTYYEVQDVLAAEYPELIAEA 185
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
+++D+ G P+ + + + R
Sbjct: 186 MQPDEESDEPGSSPQQLADETDIDLSR 212
>gi|68563801|gb|AAY99039.1| RNA polymerase II largest subunit [Cortinarius molochinus]
gi|68563803|gb|AAY99040.1| RNA polymerase II largest subunit [Cortinarius molochinus]
Length = 224
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|357434302|gb|AET79557.1| RPB1, partial [Lasiosphaeris hispida]
gi|357434304|gb|AET79558.1| RPB1, partial [Lasiosphaeris hispida]
Length = 247
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQ 195
+ +
Sbjct: 121 ETK 123
>gi|357434272|gb|AET79542.1| RPB1, partial [Lasiosphaeris hispida]
gi|357434274|gb|AET79543.1| RPB1, partial [Lasiosphaeris hispida]
Length = 247
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+K + ++ VC NCSK+LAD + +F A+KIR PK R
Sbjct: 1 ECPGHFGHIELAKPVFHPGFIKRVKKLLEIVCHNCSKVLADRSEPEFAAAMKIRDPKVRF 60
Query: 135 EQILCACKTKNKCEGGD--EIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
++ CK K +CE + D D + GCG QPT+ + + A
Sbjct: 61 HRVWEHCKKKKRCENESTKKKDDSDFDPSDAPKAPAASHGGCGNDQPTVRQQALTLWANL 120
Query: 193 KAQ 195
+ +
Sbjct: 121 ETK 123
>gi|110669654|gb|ABG81921.1| RNA polymerase II largest subunit, partial [Acarospora schleicheri]
Length = 388
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQ 136
GHFGH+ELA P+FH+GFM + I+ VC NC KIL DE D+ F + R PK R +
Sbjct: 4 GHFGHIELATPVFHVGFMTKIKKILETVCHNCGKILVDEHDNPAFAETQRHRDPKRRFDG 63
Query: 137 ILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK-----SGCGALQPTLTIDGMNMIAE 191
+ CK K CE ++L +D + K K GCG LQP + +G+ +
Sbjct: 64 VWRLCKPKLICE------TSTVLDNDYDSAPEKGKKISKHGGCGNLQPEVRREGLKLTGT 117
Query: 192 YKAQRKKNDDQGQLPE 207
+KAQ+ ++++GQ PE
Sbjct: 118 WKAQKGDDENEGQQPE 133
>gi|68563821|gb|AAY99049.1| RNA polymerase II largest subunit [Cortinarius percomis]
Length = 231
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDSEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KPKDDDDEVKSLQPDKR 133
>gi|448417596|ref|ZP_21579452.1| DNA-directed RNA polymerase subunit A' [Halosarcina pallida JCM
14848]
gi|445677550|gb|ELZ30050.1| DNA-directed RNA polymerase subunit A' [Halosarcina pallida JCM
14848]
Length = 976
Score = 99.4 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC S+
Sbjct: 6 EIGAIQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECRTCGSH 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHPK 131
G C GHFGH+ELA P+ H+GF K + ++R C C ++ L DEE ++F+ L
Sbjct: 66 SGSCNGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTDEESEEFRSGL------ 119
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
+R E++ G D DVL + KR CGA Q
Sbjct: 120 TRTEEL-----------GDDWTDVLKSAVRQARKA--KRCPHCGAPQ 153
>gi|68563741|gb|AAY99009.1| RNA polymerase II largest subunit [Cortinarius aff. calochrous
TF2001-049]
gi|68563743|gb|AAY99010.1| RNA polymerase II largest subunit [Cortinarius aff. calochrous
TF2001-103]
Length = 231
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQVRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|356541271|ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Glycine max]
Length = 1391
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 5 FTFSPFK----VAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGT 59
FT PF K++ ++FS LS EI K++ ++ G + P+ GGL D R+G
Sbjct: 11 FTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRMGP 70
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
+K C TC N +CPGH+G+L LA P+F++G++ T++ I++C+C C++IL DE+
Sbjct: 71 ANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDEDTR 130
Query: 120 KFKLALKIRHPKSRLEQI 137
K L KS L++I
Sbjct: 131 KKHLKKMRSSKKSELDKI 148
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Query: 92 IGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGD 151
IGF+ T+L ++RCVCFNCSKIL D+ D +FK A +I+ P+++L ++ CK+K+ CEGG+
Sbjct: 1 IGFLNTILKVLRCVCFNCSKILCDKNDVRFKAAQRIKRPEAKLRAVMDICKSKSMCEGGE 60
Query: 152 EIDV-LSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQ 202
E+D+ +SL ++ ++ GCG QP + DG+ + AE+K +N ++
Sbjct: 61 ELDMNVSLDPAAADKAGVPKRVGCGNPQPKIMKDGLKLTAEFKKTLDENQEK 112
>gi|68563749|gb|AAY99013.1| RNA polymerase II largest subunit [Cortinarius alcalinophilus]
Length = 224
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSMQPDKR 133
>gi|68563763|gb|AAY99020.1| RNA polymerase II largest subunit [Cortinarius cf. calochrous
TF2002-025]
Length = 224
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQVRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|133402|sp|P09846.2|RPOA1_METTW RecName: Full=DNA-directed RNA polymerase subunit A'
gi|809727|emb|CAA30838.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 865
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ K+ + F ++SP++IRKMSV +I T E G P+ L D RLG I +C +C
Sbjct: 5 LKKISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGSSLRCRSCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ GECPGHFG + LA+P+ H+GF T+ I+ +C CS+IL E +
Sbjct: 65 AKGGECPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRILLTETE 112
>gi|38091162|emb|CAE46435.1| RNA polymerase II largest subunit [Reticulomyxa filosa]
Length = 408
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 77/131 (58%), Gaps = 10/131 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFG++ELA+P +H+GF+ +L ++RCVC +CS++LA++ D FK A+ I++P+ RL
Sbjct: 1 ECPGHFGYMELARPCYHVGFLSVVLRVLRCVCHHCSRLLANQNDSAFKRAVAIQNPRDRL 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTL-TIDGMNMIAEYK 193
+ C+ KN+C + E +GCG++QP G+ + EY
Sbjct: 61 VAVAALCENKNEC---------GYIEKRESEENGTLVNGCGSVQPKYRKAKGVGIEMEYP 111
Query: 194 AQRKKNDDQGQ 204
+ + +D+ Q
Sbjct: 112 EAKDQGEDKRQ 122
>gi|16081520|ref|NP_393871.1| DNA-directed RNA polymerase subunit A' [Thermoplasma acidophilum
DSM 1728]
gi|548820|sp|Q03585.1|RPOA1_THEAC RecName: Full=DNA-directed RNA polymerase subunit A'
gi|48092|emb|CAA48281.1| DNA-directed RNA polymerase [Thermoplasma acidophilum]
gi|10639563|emb|CAC11535.1| probable DNA-directed RNA polymerase, chain A [Thermoplasma
acidophilum]
Length = 885
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F++LSPDEIRK+S ++ T + G P+ GL DL +G I+ +C TC
Sbjct: 7 RISSIKFALLSPDEIRKLSQVKVITADTYDDDGYPIEHGLMDLHMGVIEPGLRCATCGGK 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEE 117
+ ECPGHFGH+ELA P+ H+GF+K + + C +C +I L D+E
Sbjct: 67 VDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCRSCGRIKLTDDE 112
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 60 IDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD 119
+D+ KC T +N + PG+FGH+ELAKP+FHIG+ K L+ ++RCV ++ SK+L D++D
Sbjct: 1 MDRAIKCTTDGANQQDSPGYFGHIELAKPVFHIGWTKELMRVLRCVSYHSSKLLVDKDDP 60
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
KFK ++I++ ++R ++ C +K D E GA QP
Sbjct: 61 KFKQVMRIKNGEARSRALVAVCGSKR---------------FDEET---------GAPQP 96
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+G+ I + +D+ + VER+Q +TAE+
Sbjct: 97 AYKFEGLLRIMAERIFSSADDEDIDMGAEVERRQEITAEK 136
>gi|448303811|ref|ZP_21493757.1| DNA-directed RNA polymerase subunit A' [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592438|gb|ELY46625.1| DNA-directed RNA polymerase subunit A' [Natronorubrum
sulfidifaciens JCM 14089]
Length = 973
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGQHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALKIRHPKSR 133
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+ ++ SR
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFRADIEESRKLSR 129
>gi|322369999|ref|ZP_08044561.1| DNA-directed RNA polymerase subunit A' [Haladaptatus
paucihalophilus DX253]
gi|320550335|gb|EFW91987.1| DNA-directed RNA polymerase subunit A' [Haladaptatus
paucihalophilus DX253]
Length = 976
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
V F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 13 VSFGLMDPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGQHSGSC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C +CS+ +L +EE +K++
Sbjct: 73 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRDCSRLLLTEEEKEKYR 119
>gi|68563827|gb|AAY99052.1| RNA polymerase II largest subunit [Cortinarius quercus-ilicis]
Length = 231
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSMQPDKR 133
>gi|68563747|gb|AAY99012.1| RNA polymerase II largest subunit [Cortinarius alcalinophilus]
Length = 231
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSMQPDKR 133
>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_ANIW93I24]
Length = 1264
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
V + ++F + SP+EIRK SV E+ +T E GM + GGL D RLGT++ KC TC
Sbjct: 6 VKAIAGIKFCVWSPNEIRKYSVVEVTAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTCG 65
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE--DD-----KFKL 123
+ CPGHFGH+EL++P+ HI F+ + +++ C +CS++ +E D+ K++
Sbjct: 66 NTSARCPGHFGHVELSEPVLHIAFIDNIHKLLQATCRSCSRLKVPQEVLDEFSKLKKYRA 125
Query: 124 ALKIRHPKSRLEQILCACKTKNKC 147
+ + K EQI K +C
Sbjct: 126 SFNVISQKRIPEQIFEKAKKSKEC 149
>gi|169247198|gb|ACA51490.1| RNA polymerase II largest subunit, partial [Candida mesenterica]
Length = 210
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + + VC +C K+L DE + ALKIR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKVCESVCMHCGKLLLDETNVAMNQALKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE + +G + ++ ++ GCG QPT+ DG+ + +K
Sbjct: 61 WTTCKTKMVCE--------TDIGDEDQQDEGSKRGGCGHTQPTIRRDGLKLWGTWKTN-- 110
Query: 198 KNDDQGQLPE 207
K+ D+ + PE
Sbjct: 111 KSFDENEQPE 120
>gi|312190875|gb|ADQ43336.1| RNA polymerase II largest subunit [Boletus sp. REH8790]
Length = 244
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSR 133
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ +R PK+R
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFSDKIRHVRDPKAR 60
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ + CKTK CE DE + G D +EP +K GCG +QP + +G+ + +YK
Sbjct: 61 MAIVWSHCKTKMVCE-TDEPKEEGVEG-DVDEP-KKGHGGCGHIQPAIRKEGLKLFVQYK 117
Query: 194 AQRKKNDD 201
+ +++D
Sbjct: 118 RPKDEDED 125
>gi|68563847|gb|AAY99062.1| RNA polymerase II largest subunit [Cortinarius xanthochlorus]
Length = 231
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSLQPDKR 133
>gi|68563789|gb|AAY99033.1| RNA polymerase II largest subunit [Cortinarius langei s.l.
TF1999-084]
Length = 228
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGT--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KNKDDDDEMKSLQPDKR 133
>gi|297527931|gb|ADI46010.1| RNA polymerase II subunit 1 [Morchella sp. Mel-25]
gi|297527953|gb|ADI46021.1| RNA polymerase II subunit 1 [Morchella sp. Mel-25]
gi|297528015|gb|ADI46052.1| RNA polymerase II subunit 1 [Morchella sp. Mel-25]
Length = 239
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K +
Sbjct: 61 LCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDK 120
Query: 197 KKNDDQGQLPEPVERKQTLTAE 218
++ Q E+K L +E
Sbjct: 121 DAQEEASQ----GEKKSILPSE 138
>gi|68563829|gb|AAY99053.1| RNA polymerase II largest subunit [Cortinarius quercus-ilicis]
Length = 231
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSMQPDKR 133
>gi|300394216|gb|ADK11734.1| DNA-directed RNA polymerase II subunit one [Chalciporus piperatus]
Length = 232
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 8/134 (5%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK CE D + + + +K GCG +QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKTKMVCETDDPKEEGAEGDAEEP---KKGHGGCGHIQPLVRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQGQL 205
YK +++++D L
Sbjct: 116 YKRPKEEDEDAKSL 129
>gi|297527977|gb|ADI46033.1| RNA polymerase II subunit 1 [Morchella sp. Mel-3]
gi|297527979|gb|ADI46034.1| RNA polymerase II subunit 1 [Morchella sp. Mel-3]
gi|297527981|gb|ADI46035.1| RNA polymerase II subunit 1 [Morchella sp. Mel-3]
Length = 239
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K +
Sbjct: 61 LCKAKSTCDSDNTSGDEENNFGEDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDK 120
Query: 197 KKNDDQGQLPEPVERKQTLTAE 218
++ Q E+K L +E
Sbjct: 121 DAQEEASQ----GEKKSILPSE 138
>gi|68563781|gb|AAY99029.1| RNA polymerase II largest subunit [Cortinarius fulvocitrinus]
Length = 232
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 11/141 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGE-EPLRKRKSGCGALQPTLTIDGMNMIA 190
+R+ + CKTK CE D + G D + E +K GCG +QP + +G+ +
Sbjct: 59 NRMAVVWAHCKTKMVCEPDDPKEE----GADPDNEEAKKGHGGCGHVQPQIRKEGLKLFV 114
Query: 191 EYKAQRKKNDDQGQLPEPVER 211
+YK + K +DD+ + +P +R
Sbjct: 115 QYK-KNKDDDDEVKSMQPDKR 134
>gi|20094123|ref|NP_613970.1| DNA-directed RNA polymerase subunit A' [Methanopyrus kandleri AV19]
gi|19887124|gb|AAM01900.1| DNA-directed RNA polymerase largest subunit, the C-terminal part
[Methanopyrus kandleri AV19]
Length = 953
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
V+ + F IL PD+IRKMS E+ +T E G P+ GG+ D R+G ID +C TC
Sbjct: 16 VKRILFGILPPDKIRKMSKVEVTSPETYDEDGYPIEGGVMDTRMGVIDPGLRCRTCGQPA 75
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK--IRHP 130
G CPGHFGH+ELA+P+ H + + + ++R C C ++ L ++E + + ++ IR
Sbjct: 76 GRCPGHFGHIELARPVLHPRYAERIKDVLRATCPECGRVKLPEDEIESYLREVREGIRPV 135
Query: 131 KSRLEQILCACKTKNKC 147
KS +++ + + C
Sbjct: 136 KSVAAEVIDRAEKRESC 152
>gi|300394276|gb|ADK11764.1| DNA-directed RNA polymerase II subunit one [Serpula himantioides]
Length = 231
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF--ADKIRHVRDPKA 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE + + G + +EP +K GCG QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMTCETDEPKEEGE--GAENDEP-KKGHGGCGHQQPLIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQ 202
K + K+DD+
Sbjct: 116 K--KPKDDDE 123
>gi|448725404|ref|ZP_21707862.1| DNA-directed RNA polymerase subunit A' [Halococcus morrhuae DSM
1307]
gi|445798521|gb|EMA48924.1| DNA-directed RNA polymerase subunit A' [Halococcus morrhuae DSM
1307]
Length = 985
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F +++P+E R MS T+I T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGAIDFGLMNPEEYRDMSATKIITADTYDDDGYPIDMGLMDPRLGVIDPGLECKTCGQH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALK 126
G C GHFGH+ELA P+ H+GF K + ++R C CS++L DE E D+F L+
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLDEHERDEFAERLQ 123
>gi|448737566|ref|ZP_21719606.1| DNA-directed RNA polymerase subunit A' [Halococcus thailandensis
JCM 13552]
gi|445803710|gb|EMA53993.1| DNA-directed RNA polymerase subunit A' [Halococcus thailandensis
JCM 13552]
Length = 985
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F +++P+E R MS T+I T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGAIDFGLMNPEEYRDMSATKIITADTYDDDGYPIDMGLMDPRLGVIDPGLECKTCGQH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALK 126
G C GHFGH+ELA P+ H+GF K + ++R C CS++L DE E D+F L+
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLDEHERDEFAERLQ 123
>gi|169247200|gb|ACA51491.1| RNA polymerase II largest subunit, partial [Candida mesenterica]
Length = 209
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + + VC +C K+L DE + ALKIR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKVCESVCMHCGKLLLDETNVAMNQALKIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE + +G + ++ ++ GCG QPT+ DG+ + +K
Sbjct: 61 WTTCKTKMVCE--------TDIGDEDQQDEGSKRGGCGHTQPTIRRDGLKLWGTWKTN-- 110
Query: 198 KNDDQGQLPE 207
K+ D+ + PE
Sbjct: 111 KSFDENEQPE 120
>gi|371945115|gb|AEX62936.1| DNA-directed RNA polymerase subunit 1 [Moumouvirus Monve]
Length = 1504
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT----ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ V+F I S ++ K S +G T P+ GG+ D RLG + R +C TC
Sbjct: 18 ITAVEFRIYSNSDVVKYSAINDPNGITVAEIQNNNEPVQGGVIDRRLGVTESRTECATCG 77
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+CPGHFGH++ +P+FH GF+ + I+ C+C C+K+L + L+ +H
Sbjct: 78 ETALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCNKLLVHRNEAAIDRLLRNKHG 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN--- 187
K R +I CK C+ K GCG ++I+ N
Sbjct: 138 KQRFAEIRSICKGITHCQ--------------------KDGYGCGTPVHKISIEKRNCSI 177
Query: 188 -MIAEYKAQRKKNDDQ-GQL 205
++AE + + DDQ G+L
Sbjct: 178 YLLAEPVKRSDEYDDQTGEL 197
>gi|441432235|ref|YP_007354277.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
gi|440383315|gb|AGC01841.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba polyphaga
moumouvirus]
Length = 1504
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT----ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ V+F I S ++ K S +G T P+ GG+ D RLG + R +C TC
Sbjct: 18 ITAVEFRIYSNSDVVKYSAINDPNGITVAEIQNNNEPVQGGVIDRRLGVTESRTECATCG 77
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+CPGHFGH++ +P+FH GF+ + I+ C+C C+K+L + L+ +H
Sbjct: 78 ETALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCNKLLVHRNEAAIDRLLRNKHG 137
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMN--- 187
K R +I CK C+ K GCG ++I+ N
Sbjct: 138 KQRFAEIRSICKGITHCQ--------------------KDGYGCGTPVHKISIEKRNCSI 177
Query: 188 -MIAEYKAQRKKNDDQ-GQL 205
++AE + + DDQ G+L
Sbjct: 178 YLLAEPVKRSDEYDDQTGEL 197
>gi|310914381|emb|CBH31026.1| RNA polymerase II largest subunit, partial [Millerozyma farinosa]
Length = 179
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCA 140
GH+ELAKP+FHIGF+ + + C+C +C K+L DE + A+KIR PK R +
Sbjct: 1 GHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAMAQAIKIRDPKKRFNAVWSL 60
Query: 141 CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
CK+K CE DVLS P+ + + GCG QPT+ DG+ + +K + KN
Sbjct: 61 CKSKMICEA----DVLSNENDPNSAPVTQGRGGCGHTQPTIRRDGLKLWGTWK--QNKNF 114
Query: 201 DQGQLPE 207
++ + PE
Sbjct: 115 EENEQPE 121
>gi|68563831|gb|AAY99054.1| RNA polymerase II largest subunit [Cortinarius rapaceus s.l.
TSJ2003-100]
Length = 231
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQVRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KNKDDDDEMKSLQPDKR 133
>gi|297527909|gb|ADI45999.1| RNA polymerase II subunit 1 [Morchella importuna]
gi|297527935|gb|ADI46012.1| RNA polymerase II subunit 1 [Morchella populiphila]
gi|297527987|gb|ADI46038.1| RNA polymerase II subunit 1 [Morchella septimelata]
gi|297527989|gb|ADI46039.1| RNA polymerase II subunit 1 [Morchella importuna]
gi|297527991|gb|ADI46040.1| RNA polymerase II subunit 1 [Morchella septimelata]
gi|297527993|gb|ADI46041.1| RNA polymerase II subunit 1 [Morchella septimelata]
gi|297527995|gb|ADI46042.1| RNA polymerase II subunit 1 [Morchella septimelata]
gi|297527997|gb|ADI46043.1| RNA polymerase II subunit 1 [Morchella septimelata]
gi|297527999|gb|ADI46044.1| RNA polymerase II subunit 1 [Morchella septimelata]
gi|297528019|gb|ADI46054.1| RNA polymerase II subunit 1 [Morchella importuna]
gi|297528023|gb|ADI46056.1| RNA polymerase II subunit 1 [Morchella septimelata]
Length = 239
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K +
Sbjct: 61 LCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDK 120
Query: 197 KKNDDQGQLPEPVERKQTLTAE 218
++ Q E+K L +E
Sbjct: 121 DAQEEASQ----GEKKAILPSE 138
>gi|68563845|gb|AAY99061.1| RNA polymerase II largest subunit [Cortinarius terpsichores]
Length = 231
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHIQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P R
Sbjct: 116 K-KTKDDDDEVKSLQPDNR 133
>gi|68563805|gb|AAY99041.1| RNA polymerase II largest subunit [Cortinarius natalis]
Length = 231
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFSDKIRHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKEEGA--DPDIEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSMQPDKR 133
>gi|297527905|gb|ADI45997.1| RNA polymerase II subunit 1 [Morchella sp. Mel-31]
gi|297527907|gb|ADI45998.1| RNA polymerase II subunit 1 [Morchella sp. Mel-27]
gi|297527911|gb|ADI46000.1| RNA polymerase II subunit 1 [Morchella sp. Mel-27]
gi|297527913|gb|ADI46001.1| RNA polymerase II subunit 1 [Morchella sp. Mel-26]
gi|297527915|gb|ADI46002.1| RNA polymerase II subunit 1 [Morchella sp. Mel-26]
gi|297527917|gb|ADI46003.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527919|gb|ADI46004.1| RNA polymerase II subunit 1 [Morchella sp. Mel-26]
gi|297527927|gb|ADI46008.1| RNA polymerase II subunit 1 [Morchella sp. Mel-29]
gi|297527929|gb|ADI46009.1| RNA polymerase II subunit 1 [Morchella sp. Mel-26]
gi|297527933|gb|ADI46011.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527937|gb|ADI46013.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527943|gb|ADI46016.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527945|gb|ADI46017.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527947|gb|ADI46018.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527949|gb|ADI46019.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527955|gb|ADI46022.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527957|gb|ADI46023.1| RNA polymerase II subunit 1 [Morchella sp. Mel-30]
gi|297527959|gb|ADI46024.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297527967|gb|ADI46028.1| RNA polymerase II subunit 1 [Morchella sp. Mel-8]
gi|297527969|gb|ADI46029.1| RNA polymerase II subunit 1 [Morchella sp. Mel-31]
gi|297527971|gb|ADI46030.1| RNA polymerase II subunit 1 [Morchella sp. Mel-31]
gi|297527973|gb|ADI46031.1| RNA polymerase II subunit 1 [Morchella sp. Mel-27]
gi|297527975|gb|ADI46032.1| RNA polymerase II subunit 1 [Morchella sp. Mel-31]
gi|297528001|gb|ADI46045.1| RNA polymerase II subunit 1 [Morchella sp. Mel-27]
gi|297528003|gb|ADI46046.1| RNA polymerase II subunit 1 [Morchella sp. Mel-8]
gi|297528005|gb|ADI46047.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297528007|gb|ADI46048.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297528009|gb|ADI46049.1| RNA polymerase II subunit 1 [Morchella sp. Mel-29]
gi|297528011|gb|ADI46050.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
gi|297528013|gb|ADI46051.1| RNA polymerase II subunit 1 [Morchella sp. Mel-8]
gi|297528017|gb|ADI46053.1| RNA polymerase II subunit 1 [Morchella sp. Mel-29]
gi|297528021|gb|ADI46055.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
Length = 239
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K +
Sbjct: 61 LCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDK 120
Query: 197 KKNDDQGQ 204
++ Q
Sbjct: 121 DAQEEASQ 128
>gi|300394250|gb|ADK11751.1| DNA-directed RNA polymerase II subunit one [Cristinia sp.
FP-100305]
Length = 246
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D +F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPQF--ADKIRHIRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CK K CE D + G E ++K GCG +QP + +G+ + +
Sbjct: 59 ARMAVVWSHCKAKMVCEPDDPKEE----GDGDNEEVKKGHGGCGHIQPQIRKEGLKLFLQ 114
Query: 192 YKAQRKKNDDQGQLPEPVERKQTLTAE 218
YK + K+DD+ E++ L +E
Sbjct: 115 YK--KSKDDDEEMKSAQPEKRLILPSE 139
>gi|297527951|gb|ADI46020.1| RNA polymerase II subunit 1 [Morchella sp. Mel-20]
Length = 196
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K +
Sbjct: 61 LCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDK 120
Query: 197 KKNDDQGQLPEPVERKQTLTAE 218
++ Q E+K L +E
Sbjct: 121 DAQEEASQ----GEKKPILPSE 138
>gi|383620453|ref|ZP_09946859.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
gi|448697814|ref|ZP_21698692.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
gi|445781180|gb|EMA32041.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
Length = 974
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFR 118
>gi|222478544|ref|YP_002564781.1| DNA-directed RNA polymerase subunit A' [Halorubrum lacusprofundi
ATCC 49239]
gi|222451446|gb|ACM55711.1| DNA-directed RNA polymerase subunit A' [Halorubrum lacusprofundi
ATCC 49239]
Length = 975
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC S+ G C
Sbjct: 12 IDFGLMDPETYRDMSATKVITADTYNDDGYPIDMGLMDPRLGVIDPGLECRTCGSHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKLALKIRHPKSRLE 135
GHFGH+ELA P+ H+GF K + ++R C C K+ DEE D+F + R E
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGKLALDEEQRDEF---------RDRYE 122
Query: 136 QILCACKTKNKCEGGDEIDVLS-------------LLGHDGEEPLRKRKSGCGALQPTLT 182
+ K G DE DVL G + ++ + +Q L+
Sbjct: 123 --------RAKELGNDEHDVLKAAVRQARKASTCPFCGEPQADIKHEKPTTYYEVQDVLS 174
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
D IA ++ DD G P+ + K + ER
Sbjct: 175 GDYSERIAAAMQPDEEEDDPGTSPQELAEKTDIDLER 211
>gi|297527921|gb|ADI46005.1| RNA polymerase II subunit 1 [Morchella frustrata]
gi|297527923|gb|ADI46006.1| RNA polymerase II subunit 1 [Morchella frustrata]
gi|297527925|gb|ADI46007.1| RNA polymerase II subunit 1 [Morchella frustrata]
gi|297527939|gb|ADI46014.1| RNA polymerase II subunit 1 [Morchella sp. Mel-2]
gi|297527941|gb|ADI46015.1| RNA polymerase II subunit 1 [Morchella sp. Mel-2]
gi|297527961|gb|ADI46025.1| RNA polymerase II subunit 1 [Morchella sp. Mel-2]
gi|297527963|gb|ADI46026.1| RNA polymerase II subunit 1 [Morchella sp. Mel-2]
gi|297527965|gb|ADI46027.1| RNA polymerase II subunit 1 [Morchella sp. Mel-2]
Length = 239
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 13/145 (8%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCE----GGDEIDVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYK 193
CK K+ C+ GDE + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 LCKAKSTCDSDSTSGDEENN---FGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWK 117
Query: 194 AQRKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 118 PDKDAQEEASQ----GEKKSILPSE 138
>gi|354609473|ref|ZP_09027429.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. DL1]
gi|353194293|gb|EHB59795.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. DL1]
Length = 964
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 7/137 (5%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R MS T++ T + G P+ GL D RLG ID +C+TC G C
Sbjct: 6 ISFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGQRSGSC 65
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLAL-KIRHPKSRL 134
GHFGH+ELA P+ H+GF K + ++R C CS+ +L +EE D+F+ L + R + +
Sbjct: 66 NGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECSRLLLTEEEKDEFRADLDRTRSLRQDV 125
Query: 135 EQILCA----CKTKNKC 147
++ A + K+ C
Sbjct: 126 SDVMTAAIREARKKDHC 142
>gi|68563843|gb|AAY99060.1| RNA polymerase II largest subunit [Cortinarius suaveolens]
Length = 231
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNFAEKVRHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSMQPDKR 133
>gi|68563813|gb|AAY99045.1| RNA polymerase II largest subunit [Cortinarius ochraceopallescens]
Length = 231
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F + IR PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNFADKISHIRDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEVKSLQPDKR 133
>gi|408691222|gb|AFU81983.1| RNA polymerase II subunit 1, partial [Morchella importuna]
gi|408691224|gb|AFU81984.1| RNA polymerase II subunit 1, partial [Morchella importuna]
gi|408691226|gb|AFU81985.1| RNA polymerase II subunit 1, partial [Morchella importuna]
Length = 241
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
H GH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HXGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQLPEPVERKQTLTAE 218
+ ++ Q E+K L +E
Sbjct: 121 KDAQEEASQ----GEKKAILPSE 139
>gi|68563797|gb|AAY99037.1| RNA polymerase II largest subunit [Cortinarius luhmannii]
Length = 186
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSLQPDKR 133
>gi|269986412|gb|EEZ92699.1| RNA polymerase Rpb1 domain 1 [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 317
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE-RGMPMAGGLSDLRLGTIDKRFKC 66
S F +K+ ++F I+SP I+KMS I + + G P+ GGLSDLR+G D C
Sbjct: 5 SNFVFSKIASLEFGIMSPKYIQKMSSVSITSSELYDIDGFPVDGGLSDLRMGVTDPGLTC 64
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
+TC + + +CPGHFGHL+LA+P+F+I + + I+ C +C +IL +E
Sbjct: 65 KTCGNTIRDCPGHFGHLDLARPVFNIKTVPYVYNIVNSTCNSCGRILISDE 115
>gi|58395915|gb|AAW72757.1| RNA polymerase II largest subunit [Echinodontium tinctorium]
Length = 230
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRLE 135
PGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F +K +R PK+R+
Sbjct: 1 PGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFADKIKHVRDPKARMA 60
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
+ CK K CE + + G D +EP +K GCG LQP + +G+ + +YK +
Sbjct: 61 IVWAHCKGKTVCEPDEPKEEGD--GADPDEP-KKGHGGCGHLQPAIRKEGLKLFLQYK-K 116
Query: 196 RKKNDDQGQLPEPVER 211
K +D+ G+ EP +R
Sbjct: 117 SKDDDEDGKSLEPTKR 132
>gi|347522775|ref|YP_004780345.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
gi|343459657|gb|AEM38093.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
Length = 882
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 1/112 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTE-RGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSV I + + G P+ GGL D RLG +CETC ++
Sbjct: 7 IKEIKFGILSPDEIRKMSVVAITTDQLYDPDGRPIPGGLMDPRLGAAIPGQRCETCGNDY 66
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
CPGHFG +ELA P+ ++GF + + I+R C NC +I E + K L L
Sbjct: 67 RLCPGHFGRIELALPVINVGFARHIYEILRATCRNCGRIKLPERELKRYLKL 118
>gi|167043884|gb|ABZ08573.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG3E18]
Length = 1273
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCS 70
V + ++F + SP+EIRK SV EI +T E GM + GGL D RLGT++ KC TC
Sbjct: 11 VKSIDGIKFCVWSPNEIRKYSVAEITAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTCG 70
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE--DD-----KFKL 123
+ CPGHFGH+ELA+P+ HI F+ + ++ C CS++ +E D+ K+
Sbjct: 71 NTSARCPGHFGHVELAEPVLHIAFIDNIHKLLNATCRACSRLKVPQEVLDEFSKFKKYSA 130
Query: 124 ALKIRHPKSRLEQILCACKTKNKC 147
+ + K EQI K +C
Sbjct: 131 SFTVLSRKRIPEQIFEKAKKSKEC 154
>gi|310914377|emb|CBH31024.1| RNA polymerase II largest subunit, partial [Millerozyma farinosa]
gi|310914379|emb|CBH31025.1| RNA polymerase II largest subunit, partial [Millerozyma farinosa]
Length = 179
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCA 140
GH+ELAKP+FHIGF+ + + C+C +C K+L DE + A+KIR PK R +
Sbjct: 1 GHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETNPAMAQAIKIRDPKKRFNAVWSL 60
Query: 141 CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
CK K CE DVLS P+ + + GCG QPT+ DG+ + +K + KN
Sbjct: 61 CKAKMICEA----DVLSNENDPNSAPVTQGRGGCGHTQPTIRRDGLKLWGTWK--QNKNF 114
Query: 201 DQGQLPE 207
++ + PE
Sbjct: 115 EENEQPE 121
>gi|448388147|ref|ZP_21565087.1| DNA-directed RNA polymerase subunit A' [Haloterrigena salina JCM
13891]
gi|445670798|gb|ELZ23395.1| DNA-directed RNA polymerase subunit A' [Haloterrigena salina JCM
13891]
Length = 974
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMQPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFR 118
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 20/150 (13%)
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCA 140
GH+ELAKP+FH GF KT++ ++RCVCF CS++LAD D +F AL +++ K R ++
Sbjct: 1 GHVELAKPVFHYGFFKTVVKVLRCVCFYCSRLLADTSDPRFLRALTLKNRKHRFREVHDC 60
Query: 141 CKTKNKCEGGDE---IDVLSLLGHDGEE------PLRK-RKSGCGALQPTLTIDGM-NMI 189
C + CE G++ D L +L + P +K GCG +QP + ++ M ++
Sbjct: 61 CVGRKVCEAGEDGRRADPLGVLNDPSSQQQVPGAPGKKAAHGGCGNVQPHIKVESMLRLV 120
Query: 190 AEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
AE+ K DD+ Q RK LT E+
Sbjct: 121 AEF----PKRDDEAQ-----PRKMVLTPEK 141
>gi|68563783|gb|AAY99030.1| RNA polymerase II largest subunit [Cortinarius gracilior]
Length = 231
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CK+K CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKSKMVCEPDDPKEEGA--EQDNEEP-KKGHGGCGHVQPQVRKEGLKLFVQY 115
Query: 193 KAQRKKNDD 201
K R K+DD
Sbjct: 116 K--RSKDDD 122
>gi|169247114|gb|ACA51448.1| RNA polymerase II largest subunit, partial [Candida prunicola]
Length = 228
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 9/129 (6%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L +E + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLNESNLAMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE D + + P ++ GCG QPT+ DG+ + +K K
Sbjct: 61 TICKTKMICETDSTED-------EAQNPETAKRGGCGHTQPTVRRDGLKLWGTWK--HNK 111
Query: 199 NDDQGQLPE 207
+ D+ + PE
Sbjct: 112 SFDENEQPE 120
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELAKP+FH GF+ T+ ++ VC C K+ +D+ D F ++R ++R
Sbjct: 1 ECPGHFGHIELAKPVFHEGFVTTIKKLLESVCLFCGKLKSDDSDPDFFRKSRLRDRRARF 60
Query: 135 EQILCACKTKNKCEGGDE--IDVLSLLGHDGEEPLRKRK---SGCGALQPTLTIDGMNMI 189
+ CKTK C+G +E + G L +RK GCG QP + +G+ ++
Sbjct: 61 TGVWSLCKTKMVCQGSEEDADEEQQQQQQQGANLLGRRKGAHGGCGRRQPKIRKEGLTLL 120
Query: 190 AEYKAQRKKNDDQGQLPEPV 209
A Y K+ +D P P+
Sbjct: 121 AHYA---KETEDADLAPRPL 137
>gi|448330661|ref|ZP_21519940.1| DNA-directed RNA polymerase subunit A' [Natrinema versiforme JCM
10478]
gi|445611165|gb|ELY64925.1| DNA-directed RNA polymerase subunit A' [Natrinema versiforme JCM
10478]
Length = 975
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALKIRHPKSR 133
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+ L SR
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFRDQLTESRKLSR 129
>gi|448336439|ref|ZP_21525538.1| DNA-directed RNA polymerase subunit A' [Natrinema pallidum DSM
3751]
gi|445629179|gb|ELY82473.1| DNA-directed RNA polymerase subunit A' [Natrinema pallidum DSM
3751]
Length = 975
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALKIRHPKSR 133
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+ L SR
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFRDQLDESRKLSR 129
>gi|68563777|gb|AAY99027.1| RNA polymerase II largest subunit [Cortinarius elegantissimus]
Length = 233
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 11/141 (7%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
+CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 2 KCPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPK 59
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGE-EPLRKRKSGCGALQPTLTIDGMNMIA 190
+R+ + CKTK CE D + G D + E +K GCG +QP + +G+ +
Sbjct: 60 NRMAVVWAHCKTKMVCEPDDPKEE----GADPDNEETKKGHGGCGHVQPQIRKEGLKLFV 115
Query: 191 EYKAQRKKNDDQGQLPEPVER 211
+YK + K +DD+ + +P +R
Sbjct: 116 QYK-KTKDDDDEVKSMQPDKR 135
>gi|297527983|gb|ADI46036.1| RNA polymerase II subunit 1 [Morchella sp. Mes-8]
Length = 239
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K +
Sbjct: 61 LCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDK 120
Query: 197 KKNDDQGQ 204
++ Q
Sbjct: 121 DAQEETTQ 128
>gi|284163648|ref|YP_003401927.1| DNA-directed RNA polymerase subunit A' [Haloterrigena turkmenica
DSM 5511]
gi|284013303|gb|ADB59254.1| DNA-directed RNA polymerase subunit A' [Haloterrigena turkmenica
DSM 5511]
Length = 974
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMQPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFR 118
>gi|68563769|gb|AAY99023.1| RNA polymerase II largest subunit [Cortinarius claroflavus]
gi|68563825|gb|AAY99051.1| RNA polymerase II largest subunit [Cortinarius prasinus]
Length = 231
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 11/140 (7%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGE-EPLRKRKSGCGALQPTLTIDGMNMIAE 191
R+ + CKTK CE D + G D + E +K GCG +QP + +G+ + +
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEE----GADPDNEETKKGHGGCGHVQPQIRKEGLKLFVQ 114
Query: 192 YKAQRKKNDDQGQLPEPVER 211
YK + K +DD+ + +P +R
Sbjct: 115 YK-KTKDDDDEVKSMQPDKR 133
>gi|68563779|gb|AAY99028.1| RNA polymerase II largest subunit [Cortinarius flavovirens]
Length = 231
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTSDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + + D EE +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKEEGA--DPDNEES-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KNKDDDDEVKSMQPDKR 133
>gi|397771993|ref|YP_006539539.1| DNA-directed RNA polymerase subunit A' [Natrinema sp. J7-2]
gi|397681086|gb|AFO55463.1| DNA-directed RNA polymerase subunit A' [Natrinema sp. J7-2]
Length = 975
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALKIRHPKSR 133
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+ L SR
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFRDQLDESRKLSR 129
>gi|448342574|ref|ZP_21531522.1| DNA-directed RNA polymerase subunit A' [Natrinema gari JCM 14663]
gi|445625329|gb|ELY78691.1| DNA-directed RNA polymerase subunit A' [Natrinema gari JCM 14663]
Length = 975
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALKIRHPKSR 133
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+ L SR
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFRDQLDESRKLSR 129
>gi|448347128|ref|ZP_21536007.1| DNA-directed RNA polymerase subunit A' [Natrinema altunense JCM
12890]
gi|445631465|gb|ELY84697.1| DNA-directed RNA polymerase subunit A' [Natrinema altunense JCM
12890]
Length = 975
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALKIRHPKSR 133
GHFGH+ELA P+ H+GF K + ++R C CSK +L ++E D+F+ L SR
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFRDQLDESRKLSR 129
>gi|336253135|ref|YP_004596242.1| DNA-directed RNA polymerase subunit A' [Halopiger xanaduensis SH-6]
gi|335337124|gb|AEH36363.1| DNA-directed RNA polymerase subunit A' [Halopiger xanaduensis SH-6]
Length = 975
Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E D+F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDERDEFR 118
>gi|408691232|gb|AFU81988.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691236|gb|AFU81990.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691242|gb|AFU81993.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691244|gb|AFU81994.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
gi|408691246|gb|AFU81995.1| RNA polymerase II subunit 1, partial [Morchella diminutiva]
Length = 241
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
H GH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HXGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHDGEEPLRKRKS--GCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D K+KS GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDAGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEETTQ 129
>gi|297527985|gb|ADI46037.1| RNA polymerase II subunit 1 [Morchella sp. Mes-17]
gi|297528025|gb|ADI46057.1| RNA polymerase II subunit 1 [Morchella sp. Mes-17]
gi|297528027|gb|ADI46058.1| RNA polymerase II subunit 1 [Morchella sp. Mes-17]
Length = 239
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 FGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWR 60
Query: 140 ACKTKNKCEGGDEI-DVLSLLGHD-GEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQR 196
CK K+ C+ + D + G D G P +K+ GCG QPT+ +G+ +I +K +
Sbjct: 61 LCKAKSTCDSDNTAGDEENNFGDDTGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDK 120
Query: 197 KKNDDQGQ 204
++ Q
Sbjct: 121 DAQEETTQ 128
>gi|13542012|ref|NP_111700.1| DNA-directed RNA polymerase subunit A' [Thermoplasma volcanium
GSS1]
gi|14325445|dbj|BAB60349.1| DNA-directed RNA polymerase A' [Thermoplasma volcanium GSS1]
Length = 886
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F++LSPDEIRK+S ++ T + G P+ GL DL +G I+ +C TC
Sbjct: 7 RISSIKFALLSPDEIRKLSQVKVITADTYDDDGYPIEHGLMDLHMGVIEPGLRCATCGGK 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEE 117
+ ECPGHFGH+ELA P+ H+GF+K + + C +C +I L D+E
Sbjct: 67 VDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCKSCGRIKLTDDE 112
>gi|448297909|ref|ZP_21487943.1| DNA-directed RNA polymerase subunit A' [Natronorubrum tibetense
GA33]
gi|445592635|gb|ELY46821.1| DNA-directed RNA polymerase subunit A' [Natronorubrum tibetense
GA33]
Length = 975
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E D+F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDERDEFR 118
>gi|38091166|emb|CAE46437.1| RNA polymerase II largest subunit [Ammonia beccarii]
Length = 422
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 86/153 (56%), Gaps = 20/153 (13%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKIL-ADEEDDKFKLALKIRHPKSR 133
ECPGHFGH+ELA+P +H+GF+ L ++RCVC+ CSK+L AD D FK AL +P+ R
Sbjct: 1 ECPGHFGHIELARPCYHVGFLPITLRVLRCVCYYCSKLLCADPNSDAFKAALAEDNPRER 60
Query: 134 LEQILCACKTKNKCEGGDEID------VLSLLGHDGEEPLRKRKSGCGALQPTLTI-DGM 186
L I C+ K C G++ID ++ +GE + SGCG+ QP G+
Sbjct: 61 LMAISHLCEKKKFCGNGNKIDSADGDKAMNDGAENGENAV---YSGCGSAQPKYRKGTGV 117
Query: 187 NMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ E+ + +D G+ +RKQ L+A R
Sbjct: 118 KIEIEFADR----NDSGE-----DRKQYLSALR 141
>gi|408691208|gb|AFU81976.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691212|gb|AFU81978.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691214|gb|AFU81979.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691218|gb|AFU81981.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691220|gb|AFU81982.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691234|gb|AFU81989.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691250|gb|AFU81997.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691252|gb|AFU81998.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691254|gb|AFU81999.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691256|gb|AFU82000.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
gi|408691262|gb|AFU82003.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
Length = 241
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
H GH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 HXGHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVW 60
Query: 139 CACKTKNKCEGGDEI-DVLSLLGHD-GEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQ 195
CK K+ C+ + D + G D G P +K+ GCG QPT+ +G+ +I +K
Sbjct: 61 RLCKAKSTCDSDNTAGDEENNFGDDTGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPD 120
Query: 196 RKKNDDQGQ 204
+ ++ Q
Sbjct: 121 KDAQEETTQ 129
>gi|392465125|dbj|BAM24696.1| RNA polymerase II largest subunit, partial [Candida sp. 10-3]
Length = 237
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 12/133 (9%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQ 136
PGHFGH+ELAKP+FHIG++ + VC +C K+L DE + A++IR PK R
Sbjct: 4 PGHFGHIELAKPVFHIGYIAKIKKTCELVCMHCGKLLFDELNPAMAQAIRIRDPKRRFNA 63
Query: 137 ILCACKTKNKCEGG--DEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CK+K CE DE + S++G R+ GCG QPT+ DG+ + +K+
Sbjct: 64 VWLVCKSKMVCEADVVDENNPDSIVG--------PRRGGCGHTQPTIRRDGLKLWGTWKS 115
Query: 195 QRKKNDDQGQLPE 207
KN D+ PE
Sbjct: 116 N--KNFDELDQPE 126
>gi|313127540|ref|YP_004037810.1| DNA-directed RNA polymerase subunit a' [Halogeometricum borinquense
DSM 11551]
gi|448285311|ref|ZP_21476555.1| DNA-directed RNA polymerase subunit A' [Halogeometricum borinquense
DSM 11551]
gi|312293905|gb|ADQ68365.1| DNA-directed RNA polymerase, subunit A' [Halogeometricum
borinquense DSM 11551]
gi|445576881|gb|ELY31328.1| DNA-directed RNA polymerase subunit A' [Halogeometricum borinquense
DSM 11551]
Length = 976
Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 37/224 (16%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC S+
Sbjct: 6 EIGAIQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECRTCGSH 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHPK 131
G C GHFGH+ELA P+ H+GF K + ++R C +C ++ L +EE ++F+ L
Sbjct: 66 SGSCNGHFGHIELAAPVIHVGFTKLIRRLLRSTCRDCGRLSLTEEEAEEFRDGL------ 119
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ-------PTLTID 184
+R E++ G D DVL + R CGA Q PT +
Sbjct: 120 TRTEEL-----------GEDWTDVLKSAVRQARKA--SRCPHCGAPQHDIKHEKPTTYYE 166
Query: 185 GMNMIAEYKAQRKKN---------DDQGQLPEPVERKQTLTAER 219
+++A ++R N DD G P + + + +R
Sbjct: 167 VQDVLAGDYSERIANAMQPDEDDEDDTGMAPSELADQTGIALQR 210
>gi|347601522|gb|AEP16007.1| DNA-dependent RNA polymerase II largest subunit [Emiliania huxleyi
virus 208]
gi|357972677|gb|AET97950.1| RNA polymerase subunit beta [Emiliania huxleyi virus 201]
Length = 1468
Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ V FS+ D IR+ +VT ++ RG+P G++ L +G+ D+R +C TC+ M
Sbjct: 14 VKKVNFSVYGSDTIRQNAVTRVNEIALYTRGIPTHNGVNSLAMGSSDRRIRCTTCNELMQ 73
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
+CPGH G + L P++ ++ L ++R VCF CS+I +E DK L K K+R
Sbjct: 74 KCPGHNGEIRLPLPVYQALYIDHTLKVLRSVCFFCSEICLTDE-DKVALMEKYTDDKTRF 132
Query: 135 EQILCACKTKNKC 147
+T+ KC
Sbjct: 133 NHTYAIARTRKKC 145
>gi|169247220|gb|ACA51501.1| RNA polymerase II largest subunit, partial [Candida sequanensis]
Length = 231
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNPLMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE D++ EP + GCG QPT+ DG+ + +K + K
Sbjct: 61 NTCKTKMICEA----DIIPEENQMKGEPAPTGRGGCGHTQPTVRRDGLKLWGTWK--QNK 114
Query: 199 NDDQGQLPE 207
+ ++ + PE
Sbjct: 115 SFEENEQPE 123
>gi|300394186|gb|ADK11719.1| DNA-directed RNA polymerase II subunit one [Anomoloma
albolutescens]
Length = 235
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 11/131 (8%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD + + A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADSDPN---FADKIRHVRDPK 57
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CK+K CE + + G + +EP +K GCG +QP + +G+ + +
Sbjct: 58 ARMAVVWAHCKSKMVCEPDEPKEEGE--GAENDEP-KKGHGGCGHVQPLIRKEGLKLFVQ 114
Query: 192 YKAQRKKNDDQ 202
YK + K+DD+
Sbjct: 115 YK--KPKDDDE 123
>gi|68563759|gb|AAY99018.1| RNA polymerase II largest subunit [Cortinarius viridocoeruleus]
Length = 231
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CK+K CE D + + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKSKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KSKDDDDEVKSLQPDKR 133
>gi|73852534|ref|YP_293818.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 86]
gi|72415250|emb|CAI65487.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 86]
gi|347600516|gb|AEP15003.1| RNA polymerase beta' subunit [Emiliania huxleyi virus 88]
Length = 1468
Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ V FS+ D IR+ +VT ++ RG+P G++ L +G+ D+R +C TC+ M
Sbjct: 14 VKKVNFSVYGSDAIRQNAVTRVNEIALYTRGIPTHNGVNSLAMGSSDRRIRCTTCNELMQ 73
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
+CPGH G + L P++ ++ L ++R VCF CS+I +E DK L K K+R
Sbjct: 74 KCPGHNGEIRLPLPVYQALYIDHTLKVLRSVCFFCSEICLTDE-DKVALMEKYTDDKTRF 132
Query: 135 EQILCACKTKNKC 147
+T+ KC
Sbjct: 133 NHTYAIARTRKKC 145
>gi|283481284|emb|CAZ69400.1| putative DNA-dependent RNA polymerase II largest subunit [Emiliania
huxleyi virus 99B1]
Length = 1468
Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ V FS+ D IR+ +VT ++ RG+P G++ L +G+ D+R +C TC+ M
Sbjct: 14 VKKVNFSVYGSDAIRQNAVTRVNEIALYTRGIPTHNGVNSLAMGSSDRRIRCTTCNELMQ 73
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
+CPGH G + L P++ ++ L ++R VCF CS+I +E DK L K K+R
Sbjct: 74 KCPGHNGEIRLPLPVYQALYIDHTLKVLRSVCFFCSEICLTDE-DKVALMEKYTDDKTRF 132
Query: 135 EQILCACKTKNKC 147
+T+ KC
Sbjct: 133 NHTYAIARTRKKC 145
>gi|110669268|ref|YP_659079.1| DNA-directed RNA polymerase subunit A' [Haloquadratum walsbyi DSM
16790]
gi|109627015|emb|CAJ53491.1| DNA-directed RNA polymerase subunit A' (subunit A) [Haloquadratum
walsbyi DSM 16790]
Length = 978
Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C+TC S+
Sbjct: 8 EIGAIQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECKTCGSH 67
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
G C GHFGH+ELA P+ H+GF K + ++R C NC + L + E ++F+ L+
Sbjct: 68 SGSCNGHFGHIELAAPVIHVGFTKLIRRLLRSTCRNCGHLALTESEREEFREGLQ 122
>gi|300394282|gb|ADK11767.1| DNA-directed RNA polymerase II subunit one [Serpula similis]
Length = 231
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 9/134 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CKTK C E D G + +K GCG QP + +G+ + +
Sbjct: 59 ARMAVVWSHCKTKMIC----ETDEPKEEGDVDNDEHKKGHGGCGHQQPLIRKEGLKLFVQ 114
Query: 192 YKAQRKKNDDQGQL 205
YK + ++D L
Sbjct: 115 YKKSKDDDEDVKSL 128
>gi|169247170|gb|ACA51476.1| RNA polymerase II largest subunit, partial [Candida glaebosa]
Length = 223
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 11/129 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + VC +C K+L DE + + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCESVCMHCGKLLLDENNPQMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK C E D+L D E P ++ GCG QP + DG+ + +K K
Sbjct: 61 TVCKTKMVC----ETDIL-----DDENPDAPKRGGCGHTQPQIRRDGLKLWGTWK--NNK 109
Query: 199 NDDQGQLPE 207
D+ PE
Sbjct: 110 QFDENDQPE 118
>gi|402226085|gb|EJU06145.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1455
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QFS+L P ++ K+S EI H RG P G+ D RLG IDK CETC
Sbjct: 13 IKHIQFSLLKPQDVVKISEFEIPHHDLYTRGTRDPAPNGVLDRRLGVIDKTSVCETCGQT 72
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
C GH+ +++L P+FH+G+ K +++I++C+C CS+++ +E D
Sbjct: 73 AQTCVGHYAYIKLTLPVFHVGYFKHVISILQCICKTCSRVMLEEAD 118
>gi|169247188|gb|ACA51485.1| RNA polymerase II largest subunit, partial [Candida kruisii]
Length = 226
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 11/129 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKACECVCMHCGKLLLDETNQGMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE + D L P +K GCG QP + DG+ + +K K
Sbjct: 61 SICKTKMVCEADNGDDDL---------PESAKKGGCGHTQPVIRRDGLKLWGTWK--HNK 109
Query: 199 NDDQGQLPE 207
D+ + PE
Sbjct: 110 QFDENEQPE 118
>gi|347481891|gb|AEO97877.1| DNA-directed RNA polymerase subunit beta [Emiliania huxleyi virus
84]
Length = 1055
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ V FS+ D IR+ +VT ++ RG+P G++ L +G+ D+R +C TC+ M
Sbjct: 14 VKKVNFSVYGSDAIRQNAVTRVNEIALYTRGIPTHNGVNSLAMGSSDRRIRCTTCNELMQ 73
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
+CPGH G + L P++ ++ L ++R VCF CS+I +E DK L K K+R
Sbjct: 74 KCPGHNGEIRLPLPVYQALYIDHTLKVLRSVCFFCSEICLTDE-DKVALMEKYTDDKTRF 132
Query: 135 EQILCACKTKNKC 147
+T+ KC
Sbjct: 133 NHTYAIARTRKKC 145
>gi|448312200|ref|ZP_21501950.1| DNA-directed RNA polymerase subunit A' [Natronolimnobius
innermongolicus JCM 12255]
gi|445602707|gb|ELY56679.1| DNA-directed RNA polymerase subunit A' [Natronolimnobius
innermongolicus JCM 12255]
Length = 977
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 ISFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CSK+L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDE 113
>gi|347482341|gb|AEO98282.1| RNA polymerase subunit II [Emiliania huxleyi virus 203]
gi|347601122|gb|AEP15608.1| DNA-directed RNA polymerase subunit beta [Emiliania huxleyi virus
207]
Length = 1053
Score = 97.1 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ V FS+ D IR+ +VT ++ RG+P G++ L +G+ D+R +C TC+ M
Sbjct: 14 VKKVNFSVYGSDTIRQNAVTRVNEIALYTRGIPTHNGVNSLAMGSSDRRIRCTTCNELMQ 73
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
+CPGH G + L P++ ++ L ++R VCF CS+I +E DK L K K+R
Sbjct: 74 KCPGHNGEIRLPLPVYQALYIDHTLKVLRSVCFFCSEICLTDE-DKVALMEKYTDDKTRF 132
Query: 135 EQILCACKTKNKC 147
+T+ KC
Sbjct: 133 NHTYAIARTRKKC 145
>gi|448396747|ref|ZP_21569195.1| DNA-directed RNA polymerase subunit A' [Haloterrigena limicola JCM
13563]
gi|445673276|gb|ELZ25837.1| DNA-directed RNA polymerase subunit A' [Haloterrigena limicola JCM
13563]
Length = 975
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 LSFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLALKIRHPKSR 133
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E D+F+ L SR
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDERDEFRDQLDESRKLSR 129
>gi|448543659|ref|ZP_21625213.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-646]
gi|448550751|ref|ZP_21629054.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-645]
gi|448558948|ref|ZP_21633269.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-644]
gi|445706382|gb|ELZ58265.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-646]
gi|445711256|gb|ELZ63050.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-645]
gi|445711789|gb|ELZ63577.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-644]
Length = 974
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 10 IQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLQCRTCGQHSGSC 69
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C C ++ L DEE D+++
Sbjct: 70 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTDEEADEYR 116
>gi|448293470|ref|ZP_21483576.1| DNA-directed RNA polymerase subunit A' [Haloferax volcanii DS2]
gi|445570524|gb|ELY25084.1| DNA-directed RNA polymerase subunit A' [Haloferax volcanii DS2]
Length = 974
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 10 IQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLQCRTCGQHSGSC 69
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C C ++ L DEE D+++
Sbjct: 70 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTDEEADEYR 116
>gi|292654527|ref|YP_003534424.1| DNA-directed RNA polymerase subunit A [Haloferax volcanii DS2]
gi|291371230|gb|ADE03457.1| DNA-directed RNA polymerase subunit A [Haloferax volcanii DS2]
Length = 976
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 12 IQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLQCRTCGQHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C C ++ L DEE D+++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTDEEADEYR 118
>gi|110669627|gb|ABG81908.1| RNA polymerase II largest subunit [Astrothelium cinnamomeum]
Length = 1021
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FH+GF+ + ++ C +C KIL DE + F A+K R K R
Sbjct: 1 ECPGHFGHIELAVPVFHVGFIGKIKKLLEICCHHCGKILMDETNPAFIEAMKTRDRKRRF 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLR--KRKSGCGALQPTLTIDGMNMIAEY 192
++I CKTK KCE + D + + ++PL+ + GCG + P + DG+ ++ +
Sbjct: 61 DKIWTLCKTKKKCERDPQDDPNA--DENPDQPLKPSSTRGGCGNVAPGIRKDGLKLLGTW 118
Query: 193 KAQR 196
K +
Sbjct: 119 KYDK 122
>gi|38091160|emb|CAE46434.1| RNA polymerase II largest subunit [Allogromia sp. A-DL-2003]
Length = 423
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 8/147 (5%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ LA P +H+GF+ + +++CVC CS++L D D +F I++P RL
Sbjct: 1 ECPGHFGHINLACPCYHVGFLSVTIKLLKCVCHECSRLLVDRTDPQFAKIANIKNPTKRL 60
Query: 135 EQILCACKTKNKCEGGDEIDV--LSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
+I+ CK+K C GD D ++ DG+ SGCGA QP G + E
Sbjct: 61 MKIVELCKSKKTCGTGDSTDKDENNIDDEDGDGNKVSTSSGCGAEQPNYR-KGKGVCIEV 119
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
N D G + KQ L+A+R
Sbjct: 120 TFPNGINKDSGD-----DTKQKLSAKR 141
>gi|359340421|gb|AEV24375.1| RPB1, partial [Colletotrichum dematium]
Length = 235
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F A+ R PK R +I
Sbjct: 1 FGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFLQAVNTRDPKVRFNRIWN 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGALQPTLTIDGMNMIAEYKA 194
CK K +CE +V DGE L +++ GCG +QP + + +IA+Y+A
Sbjct: 61 ICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNHGGCGNIQPRVRHKALQLIAKYEA 116
Query: 195 Q 195
Q
Sbjct: 117 Q 117
>gi|359340419|gb|AEV24374.1| RPB1 [Colletotrichum dematium]
gi|359340423|gb|AEV24376.1| RPB1, partial [Colletotrichum dematium]
Length = 235
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F A+ R PK R +I
Sbjct: 1 FGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFLQAVNTRDPKVRFNRIWN 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGALQPTLTIDGMNMIAEYKA 194
CK K +CE +V DGE L +++ GCG +QP + + +IA+Y+A
Sbjct: 61 ICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNHGGCGNIQPRVRHKALQLIAKYEA 116
Query: 195 Q 195
Q
Sbjct: 117 Q 117
>gi|448573316|ref|ZP_21640900.1| DNA-directed RNA polymerase subunit A' [Haloferax lucentense DSM
14919]
gi|445719081|gb|ELZ70764.1| DNA-directed RNA polymerase subunit A' [Haloferax lucentense DSM
14919]
Length = 974
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 10 IQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLQCRTCGQHSGSC 69
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C C ++ L DEE D+++
Sbjct: 70 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTDEEADEYR 116
>gi|240274625|gb|EER38141.1| ribosomal polymerase B1 [Ajellomyces capsulatus H143]
Length = 132
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTT--ERGMPMAGGLSDLRLGTIDK 62
F +S ++ ++ +QF +LSP+EI++MSV +++ +T +R P GL+D RLGTID+
Sbjct: 6 FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHI 92
++C TC + +CPGHFGH+EL+ P+FHI
Sbjct: 66 NWRCATCEEGINDCPGHFGHIELSTPVFHI 95
>gi|448597570|ref|ZP_21654495.1| DNA-directed RNA polymerase subunit A' [Haloferax alexandrinus JCM
10717]
gi|445739031|gb|ELZ90540.1| DNA-directed RNA polymerase subunit A' [Haloferax alexandrinus JCM
10717]
Length = 974
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 10 IQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLQCRTCGQHSGSC 69
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C C ++ L DEE D+++
Sbjct: 70 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTDEEADEYR 116
>gi|448582587|ref|ZP_21646091.1| DNA-directed RNA polymerase subunit A' [Haloferax gibbonsii ATCC
33959]
gi|445732235|gb|ELZ83818.1| DNA-directed RNA polymerase subunit A' [Haloferax gibbonsii ATCC
33959]
Length = 974
Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 10 IQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLQCRTCGQHSGSC 69
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C C ++ L DEE D+++
Sbjct: 70 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTDEEADEYR 116
>gi|169247230|gb|ACA51506.1| RNA polymerase II largest subunit, partial [Candida tanzawaensis]
Length = 226
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 11/129 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNLAMSQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE + + E ++ GCG QPT+ DG+ + +K K
Sbjct: 61 NVCKTKMVCETDNS---------EEENTDTPKRGGCGHTQPTIRRDGLKLWGTWK--HNK 109
Query: 199 NDDQGQLPE 207
N D+ PE
Sbjct: 110 NFDENDQPE 118
>gi|68563835|gb|AAY99056.1| RNA polymerase II largest subunit [Cortinarius sodagnitus]
Length = 230
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 9/138 (6%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSR 133
PGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+R
Sbjct: 1 PGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKNR 58
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 59 MAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK 115
Query: 194 AQRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 116 -KTKDDDDEVKSMQPDKR 132
>gi|409722466|ref|ZP_11269916.1| DNA-directed RNA polymerase subunit A' [Halococcus hamelinensis
100A6]
gi|448722478|ref|ZP_21705012.1| DNA-directed RNA polymerase subunit A' [Halococcus hamelinensis
100A6]
gi|445789203|gb|EMA39892.1| DNA-directed RNA polymerase subunit A' [Halococcus hamelinensis
100A6]
Length = 985
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F +++P+E R+MS T+I T + G P+ GL D RLG ID +C TC +
Sbjct: 9 EIGAIDFGLMNPEEYREMSATKIITADTYDDDGYPIDMGLMDPRLGVIDPGLECSTCGQH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLAL-KIRHP 130
G C GHFGH+ELA P+ H+GF K + ++R C CS++L D E ++F L + R
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLDSAEREEFATRLQRAREL 128
Query: 131 KSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
+ + + TK + D G + + ++ + +Q L D +IA
Sbjct: 129 DNDVNDV-----TKAAIRQARKKDRCPYCGEEQYDVQHEKPTTYYEVQDVLAADYPQLIA 183
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
++ D+ G P+ + + + R
Sbjct: 184 AAMQPDEEEDEPGTSPQELADETDIELSR 212
>gi|448383941|ref|ZP_21562939.1| DNA-directed RNA polymerase subunit A' [Haloterrigena
thermotolerans DSM 11522]
gi|445658930|gb|ELZ11742.1| DNA-directed RNA polymerase subunit A' [Haloterrigena
thermotolerans DSM 11522]
Length = 975
Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKF 121
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E D+F
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDERDEF 117
>gi|303276410|ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461851|gb|EEH59144.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1591
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 87/140 (62%), Gaps = 10/140 (7%)
Query: 5 FTFSPFKVA----KVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLG 58
FT PF+ K+R V+FS++SP EI K+ V + + + +P+ GG+ D R+G
Sbjct: 22 FTKDPFEEPTAPRKIRSVRFSLMSPQEISKVGVFHVYERNLYQMPQRVPLPGGILDPRMG 81
Query: 59 TIDKR-FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEE 117
T DK+ +C TC + +C GHFG+++L P+FHIG+ K +++I++ VC CS+++ EE
Sbjct: 82 TTDKKGAECATCKGKLIDCAGHFGYVKLELPVFHIGYFKNVISILQQVCKTCSRVMLPEE 141
Query: 118 DDKFKLALKIRHPKSRLEQI 137
+ + L + R+P RLE +
Sbjct: 142 EHEQYLR-RFRNP--RLENV 158
>gi|448457213|ref|ZP_21595708.1| DNA-directed RNA polymerase subunit A' [Halorubrum lipolyticum DSM
21995]
gi|445810794|gb|EMA60809.1| DNA-directed RNA polymerase subunit A' [Halorubrum lipolyticum DSM
21995]
Length = 968
Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC S+ G C
Sbjct: 5 IDFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECRTCGSHSGSC 64
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALKIRHPKSRLE 135
GHFGH+ELA P+ H+GF K + ++R C C K+ DE + D+F + R E
Sbjct: 65 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGKLALDEAQRDEF---------RDRYE 115
Query: 136 QILCACKTKNKCEGGDEIDVLS-------------LLGHDGEEPLRKRKSGCGALQPTLT 182
+ K G DE DVL G + ++ + +Q L+
Sbjct: 116 --------RAKELGDDEHDVLKAAVRQARKASTCPFCGEPQADIKHEKPTTYYEVQDVLS 167
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
D IA ++ DD G P+ + K + ER
Sbjct: 168 GDYSERIAAAMQPDEEEDDPGTSPQELAEKTDIALER 204
>gi|68563775|gb|AAY99026.1| RNA polymerase II largest subunit [Cortinarius dionysae]
Length = 222
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CK++ CE D + D EEP +K GCG +QP + +G+ + +Y
Sbjct: 59 RMAVVWAHCKSRMICEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-RSKDDDDEVKSLQPDKR 133
>gi|169247176|gb|ACA51479.1| RNA polymerase II largest subunit, partial [Candida homilentoma]
Length = 230
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 9/130 (6%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNPLMAQAVKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHD-GEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CK+K CE DV+S G EP + GCG QPT+ DGM + +K +
Sbjct: 61 NVCKSKMICEA----DVISEEDQQKGIEP--TGRGGCGHTQPTVRRDGMKLWGTWK--QN 112
Query: 198 KNDDQGQLPE 207
K D+ + PE
Sbjct: 113 KTFDENEQPE 122
>gi|169247180|gb|ACA51481.1| RNA polymerase II largest subunit, partial [Candida insectalens]
Length = 222
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQI 137
HFGH+ELAKP+FHIG M + + CVC NC K+L DE + ++ A+KI PK R + +
Sbjct: 1 HFGHIELAKPVFHIGLMNKIKKLCECVCMNCGKVLLDEHTNPQYAAAIKIHDPKKRFQAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE + + ++P+ R GCG++QPT+ DG+ + +K
Sbjct: 61 WSCCKTKMICEVDPPEEEEDGEFGEVKKPVFHR-GGCGSMQPTIRKDGLKLWGTWKRNNM 119
Query: 198 KNDDQGQLPEPVERKQTLTAE 218
D E +ER+Q +E
Sbjct: 120 DED-----TEQIERRQIHPSE 135
>gi|433592802|ref|YP_007282298.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
gi|448335247|ref|ZP_21524397.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
gi|433307582|gb|AGB33394.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
gi|445617628|gb|ELY71222.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
Length = 975
Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 ITFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKF 121
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E D+F
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDERDEF 117
>gi|357216549|gb|AET71008.1| RNA polymerase II largest subunit, partial [Datronia scutellata]
Length = 201
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSRLEQI 137
GH+ELA+P+FH GF+ + I+ C+C NC ++ AD D F A +IRH PK+R++ +
Sbjct: 1 GHIELARPVFHPGFIVKVKKILECICVNCGRLKADSSDKTF--AERIRHVRDPKARMQAV 58
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CK+KN CE + D G D EEP +K GCGA QP + +G+ + EYK +
Sbjct: 59 WNYCKSKNICEPDEPKD--DNEGADQEEP-KKGHGGCGASQPVIRKEGLKLFVEYKRSKD 115
Query: 198 KNDDQGQL 205
+++D L
Sbjct: 116 EDEDSKTL 123
>gi|359340425|gb|AEV24377.1| RPB1, partial [Colletotrichum spaethianum]
gi|359340427|gb|AEV24378.1| RPB1, partial [Colletotrichum spaethianum]
gi|359340429|gb|AEV24379.1| RPB1, partial [Colletotrichum spaethianum]
Length = 235
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F A+ R PK R ++
Sbjct: 1 FGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFLQAVNTRDPKVRFNRVWN 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGALQPTLTIDGMNMIAEYKA 194
CK K +CE +V DGE L +++ GCG +QP + + +IA+Y+A
Sbjct: 61 ICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNHGGCGNIQPRVRHKALQLIAKYEA 116
Query: 195 Q 195
Q
Sbjct: 117 Q 117
>gi|359340413|gb|AEV24371.1| RPB1 [Colletotrichum circinans]
gi|359340415|gb|AEV24372.1| RPB1, partial [Colletotrichum circinans]
gi|359340417|gb|AEV24373.1| RPB1, partial [Colletotrichum circinans]
gi|359340431|gb|AEV24380.1| RPB1, partial [Colletotrichum spinaciae]
gi|359340433|gb|AEV24381.1| RPB1, partial [Colletotrichum spinaciae]
gi|359340435|gb|AEV24382.1| RPB1, partial [Colletotrichum spinaciae]
Length = 235
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F A+ R PK R ++
Sbjct: 1 FGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFLQAVNTRDPKVRFNRVWN 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGALQPTLTIDGMNMIAEYKA 194
CK K +CE +V DGE L +++ GCG +QP + + +IA+Y+A
Sbjct: 61 ICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNHGGCGNIQPRVRHKALQLIAKYEA 116
Query: 195 Q 195
Q
Sbjct: 117 Q 117
>gi|68563745|gb|AAY99011.1| RNA polymerase II largest subunit [Cortinarius alcalinophilus]
Length = 223
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRLE 135
PGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 1 PGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNRMA 60
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
+ CKTK CE D + D EEP +K GCG +QP + +G+ + +YK +
Sbjct: 61 VVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK-K 116
Query: 196 RKKNDDQGQLPEPVER 211
K +DD+ + +P +R
Sbjct: 117 TKDDDDEVKSMQPDKR 132
>gi|404553637|gb|AFR79278.1| RNA polymerase II largest subunit, partial [Candida
pseudohaemulonii]
Length = 222
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCA 140
GH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 GHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESNPAMAQAIKIRDPKKRFNAVWTV 60
Query: 141 CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
CKTK CE + D E + + GCG QPT+ DG+ + +K + KN
Sbjct: 61 CKTKMICEA-------DTINEDEPEANQNLRGGCGHTQPTVRRDGLKLWGTWK--QNKNF 111
Query: 201 DQGQLPE 207
D+ + PE
Sbjct: 112 DETEQPE 118
>gi|110669618|gb|ABG81904.1| RNA polymerase II largest subunit [Simonyella variegata]
Length = 1013
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
ECPGHFGH+ELA P+FHIGF+ ++ VC NCSK+L DE + F AL+IR PK R
Sbjct: 1 ECPGHFGHIELAAPVFHIGFINKTKKLLETVCHNCSKVLLDESNQAFAAALRIRDPKRRF 60
Query: 135 EQILCACKTKNKC---EGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+ + CK++ C +E + D +E ++ GCG P + +G+ +
Sbjct: 61 DTVHKLCKSRPICVPDPSPEEKEA------DPKEAMKPTHGGCGNRHPQIRKEGLKIQGT 114
Query: 192 YKAQRKKNDDQ 202
+K + +++++
Sbjct: 115 WKVPKGEDEEE 125
>gi|435845619|ref|YP_007307869.1| DNA-directed RNA polymerase, subunit A' [Natronococcus occultus
SP4]
gi|433671887|gb|AGB36079.1| DNA-directed RNA polymerase, subunit A' [Natronococcus occultus
SP4]
Length = 975
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|433637474|ref|YP_007283234.1| DNA-directed RNA polymerase subunit A'' [Halovivax ruber XH-70]
gi|433289278|gb|AGB15101.1| DNA-directed RNA polymerase subunit A'' [Halovivax ruber XH-70]
Length = 986
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 ISFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|448316023|ref|ZP_21505661.1| DNA-directed RNA polymerase subunit A' [Natronococcus jeotgali DSM
18795]
gi|445610369|gb|ELY64143.1| DNA-directed RNA polymerase subunit A' [Natronococcus jeotgali DSM
18795]
Length = 975
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|448375015|ref|ZP_21558732.1| DNA-directed RNA polymerase subunit A' [Halovivax asiaticus JCM
14624]
gi|445659476|gb|ELZ12282.1| DNA-directed RNA polymerase subunit A' [Halovivax asiaticus JCM
14624]
Length = 986
Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 ISFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|448320528|ref|ZP_21510014.1| DNA-directed RNA polymerase subunit A' [Natronococcus amylolyticus
DSM 10524]
gi|445605430|gb|ELY59352.1| DNA-directed RNA polymerase subunit A' [Natronococcus amylolyticus
DSM 10524]
Length = 975
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|90767101|gb|ABD97921.1| RNA polymerase II largest subunit [Megacollybia platyphylla]
Length = 235
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 CPGHFGHIELAGPVFHPGFIVKVKKILESICVNCGKLKADLSDTNF--ASKIRHIRDPKQ 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIAE 191
R+ + CKT+ CE D D +GE KR GCG +QP + +G+ + +
Sbjct: 59 RMAVVWGFCKTRMVCEPDDPKDET-----EGEAAEPKRMHGGCGHVQPLVRKEGLKLFVQ 113
Query: 192 YKAQRKKNDDQGQLPEPVER 211
YK + K +DD+G+ P +R
Sbjct: 114 YK-KAKDDDDEGKSLLPDKR 132
>gi|169247210|gb|ACA51496.1| RNA polymerase II largest subunit, partial [Candida salmanticensis]
Length = 231
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 13/133 (9%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + I VCF+C K+L DE + F A+KIR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIVKIKKICESVCFHCGKLLLDESNPLFAQAVKIRDPKRRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRK---RKSGCGALQPTLTIDGMNMIAEYKA 194
CK K C+ ++ + ++P ++ GCG QP + DG+ + +K
Sbjct: 61 WSLCKGKMVCD--------TVSSDEFQDPGKEGVFNHGGCGNAQPVIRKDGLKLWGVWK- 111
Query: 195 QRKKNDDQGQLPE 207
R KN + G PE
Sbjct: 112 -RDKNSEDGDQPE 123
>gi|448366553|ref|ZP_21554676.1| DNA-directed RNA polymerase subunit A' [Natrialba aegyptia DSM
13077]
gi|445654008|gb|ELZ06864.1| DNA-directed RNA polymerase subunit A' [Natrialba aegyptia DSM
13077]
Length = 975
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|356927796|gb|AET42586.1| RNA polymerase II subunit beta [Emiliania huxleyi virus 202]
Length = 1057
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
V+ V FS+ D IRK +VT ++ RG+P G++ L +G+ D+R +C TC+ M
Sbjct: 14 VKKVNFSVYGSDTIRKNAVTRVNEIALYTRGIPTHNGVNSLAMGSSDRRIRCTTCNELMQ 73
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRL 134
+CPGH G + L P++ ++ L ++R VCF CS++ +E DK + K K+R
Sbjct: 74 KCPGHNGEIRLPLPVYQALYIDHTLKVLRSVCFFCSEVCLTDE-DKASVLEKYTDDKTRF 132
Query: 135 EQILCACKTKNKC 147
+T+ KC
Sbjct: 133 NHTYAIARTRKKC 145
>gi|169247156|gb|ACA51469.1| RNA polymerase II largest subunit, partial [Scheffersomyces
ergatensis]
Length = 206
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A++IR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIPKIKKVCECVCMHCGKLLLDESNPAMAQAIRIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTKN CE EE + GCG QPT+ DG+ + +K + K
Sbjct: 61 TLCKTKNVCETDTN-----------EEGTLTGRGGCGHTQPTIRRDGLKLWGTWK--QAK 107
Query: 199 NDDQGQLPE 207
D+G+ E
Sbjct: 108 GFDEGEQGE 116
>gi|448363836|ref|ZP_21552431.1| DNA-directed RNA polymerase subunit A' [Natrialba asiatica DSM
12278]
gi|445645420|gb|ELY98424.1| DNA-directed RNA polymerase subunit A' [Natrialba asiatica DSM
12278]
Length = 975
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|448350441|ref|ZP_21539254.1| DNA-directed RNA polymerase subunit A' [Natrialba taiwanensis DSM
12281]
gi|445636711|gb|ELY89871.1| DNA-directed RNA polymerase subunit A' [Natrialba taiwanensis DSM
12281]
Length = 975
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|169247182|gb|ACA51482.1| RNA polymerase II largest subunit, partial [Candida insectamans]
Length = 227
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 FGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNPAMAQAIKIRDPKKRFNAVWS 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKN 199
CKTK CE D + + + R GCG QPT+ DG+ + +K KN
Sbjct: 61 TCKTKMICETDQTEDDMQIDSKPQQLSTSTR-GGCGHTQPTIRRDGLKLWGTWK--HNKN 117
Query: 200 DDQGQLPE 207
D+ + PE
Sbjct: 118 FDENEQPE 125
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 21/142 (14%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
H+ELAKP+FH+GF+ + I+ C+C NCSK+ D+ + KF A KIR PK RL+ + C
Sbjct: 1 HIELAKPVFHVGFLPKVKKILECICINCSKLKTDDSNAKFIQARKIRDPKRRLKAVWDIC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEEP-----------------LRKRK--SGCGALQPTLT 182
K+K CE G+E D G D E+ +RK+K GCG QPT+
Sbjct: 61 KSKTTCERGEEAD-QDDKGSDYEDYVPSKQQQQQTTDEDLGLVRKKKPHGGCGHKQPTIR 119
Query: 183 IDGMNMIAEYKAQRKKNDDQGQ 204
+G+ + YK+ K +D+Q Q
Sbjct: 120 KEGLKLYVNYKSN-KDSDEQSQ 140
>gi|169247184|gb|ACA51483.1| RNA polymerase II largest subunit, partial [Candida insectorum]
Length = 207
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 14/125 (11%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNPAMAQAIKIRDPKRRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE E + + GCG QPT+ DG+ + +K Q K
Sbjct: 61 WNVCKTKMVCEA-------------DMEDVENGRGGCGHTQPTVRRDGLKLWGTWK-QNK 106
Query: 198 KNDDQ 202
++Q
Sbjct: 107 NEEEQ 111
>gi|300394232|gb|ADK11742.1| DNA-directed RNA polymerase II subunit one [Gyrodon lividus]
Length = 229
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSRL 134
GHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK+R+
Sbjct: 1 GHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF--AAKIRHVRDPKARM 58
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE DE G D +EP +K GCG +QP + +G+ + +YK
Sbjct: 59 AVVWSHCKTKMTCE-ADEPKEEGAEG-DVDEP-KKGHGGCGHIQPLVRKEGLKLFVQYKR 115
Query: 195 QRKKNDD 201
+ +++D
Sbjct: 116 PKDEDED 122
>gi|169247118|gb|ACA51450.1| RNA polymerase II largest subunit, partial [Candida galacta]
Length = 229
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP+FHIG++ + I+ +C +C K+ DE + F A+KIR PK R +
Sbjct: 1 FGHIELAKPVFHIGYIGKIKKILETICVHCGKVKLDESNPLFAQAIKIRDPKRRFNAVWS 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKN 199
CK+K CE D + H G+ ++ GCG QPT+ DG+ ++ +K R KN
Sbjct: 61 LCKSKMICEA----DSVDESYHAGDSKPQRFHGGCGNAQPTIRKDGLRLVGTWK--RDKN 114
Query: 200 DDQGQLPE 207
D Q PE
Sbjct: 115 ADVDQ-PE 121
>gi|448356450|ref|ZP_21545183.1| DNA-directed RNA polymerase subunit A' [Natrialba chahannaoensis
JCM 10990]
gi|445653483|gb|ELZ06354.1| DNA-directed RNA polymerase subunit A' [Natrialba chahannaoensis
JCM 10990]
Length = 976
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E ++F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLVEDEREEFQ 118
>gi|448354757|ref|ZP_21543512.1| DNA-directed RNA polymerase subunit A' [Natrialba hulunbeirensis
JCM 10989]
gi|445637088|gb|ELY90244.1| DNA-directed RNA polymerase subunit A' [Natrialba hulunbeirensis
JCM 10989]
Length = 976
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E ++F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLVEDEREEFQ 118
>gi|224060165|ref|XP_002300065.1| predicted protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| predicted protein [Populus trichocarpa]
Length = 1394
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM-PMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ +QFS +S +I K S ++ G+ + + GGL D R+G +K C+TC +
Sbjct: 23 RIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGAPNKHGTCQTCGGS 82
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKS 132
+CPGHFG+L L P++++G++ T+L I++C+C +CS++L DE+ K L ++R+P++
Sbjct: 83 FTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLRKSYLK-RMRNPRT 141
>gi|448683947|ref|ZP_21692567.1| DNA-directed RNA polymerase subunit A' [Haloarcula japonica DSM
6131]
gi|189332911|dbj|BAG41983.1| RNA polymerase subunit A [Haloarcula japonica]
gi|445783520|gb|EMA34349.1| DNA-directed RNA polymerase subunit A' [Haloarcula japonica DSM
6131]
Length = 969
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T++ T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGQLSFGLMDPEEYREMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKF 121
G C GHFGH+ELA P+ H+GF K + ++R C CS++ DE E D+F
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFAKLIRRLLRGTCRECSRLCLDEHERDEF 118
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD-KFKLALKIRHPKSRLEQILCA 140
H+ELAKP+FHIGF+ + + C+C NC KIL DE + +++ A+KIR PK R +
Sbjct: 1 HIELAKPVFHIGFLAKIKKVCECICMNCGKILLDENTNPQYRAAIKIRDPKKRFNAVWTL 60
Query: 141 CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
CKTK C+ D +G R R+ GCG++QP++ DG+ + +K K N
Sbjct: 61 CKTKMVCDVDPPEDSDDDEDDEGIH--RHRRGGCGSVQPSIRKDGLKLWGTWK---KSNV 115
Query: 201 DQGQLPEPVERKQTLTAE 218
D+ E +ER+Q ++
Sbjct: 116 DEET--ENLERRQITASD 131
>gi|448680460|ref|ZP_21690777.1| DNA-directed RNA polymerase subunit A' [Haloarcula argentinensis
DSM 12282]
gi|445768904|gb|EMA19981.1| DNA-directed RNA polymerase subunit A' [Haloarcula argentinensis
DSM 12282]
Length = 969
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T++ T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGQLSFGLMDPEEYREMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKF 121
G C GHFGH+ELA P+ H+GF K + ++R C CS++ DE E D+F
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFAKLIRRLLRGTCRECSRLCLDEHERDEF 118
>gi|448638073|ref|ZP_21676124.1| DNA-directed RNA polymerase subunit A' [Haloarcula sinaiiensis ATCC
33800]
gi|448655083|ref|ZP_21681935.1| DNA-directed RNA polymerase subunit A' [Haloarcula californiae ATCC
33799]
gi|445763959|gb|EMA15133.1| DNA-directed RNA polymerase subunit A' [Haloarcula sinaiiensis ATCC
33800]
gi|445765532|gb|EMA16670.1| DNA-directed RNA polymerase subunit A' [Haloarcula californiae ATCC
33799]
Length = 969
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T++ T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGQLSFGLMDPEEYREMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKF 121
G C GHFGH+ELA P+ H+GF K + ++R C CS++ DE E D+F
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFAKLIRRLLRGTCRECSRLCLDEHERDEF 118
>gi|55379095|ref|YP_136945.1| DNA-directed RNA polymerase subunit A' [Haloarcula marismortui ATCC
43049]
gi|55231820|gb|AAV47239.1| DNA-directed RNA polymerase subunit A [Haloarcula marismortui ATCC
43049]
Length = 969
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T++ T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGQLSFGLMDPEEYREMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKF 121
G C GHFGH+ELA P+ H+GF K + ++R C CS++ DE E D+F
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFAKLIRRLLRGTCRECSRLCLDEHERDEF 118
>gi|344213107|ref|YP_004797427.1| DNA-directed RNA polymerase subunit A' [Haloarcula hispanica ATCC
33960]
gi|343784462|gb|AEM58439.1| DNA-directed RNA polymerase subunit A' [Haloarcula hispanica ATCC
33960]
Length = 969
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T++ T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGQLSFGLMDPEEYREMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKF 121
G C GHFGH+ELA P+ H+GF K + ++R C CS++ DE E D+F
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFAKLIRRLLRGTCRECSRLCLDEHERDEF 118
>gi|289581817|ref|YP_003480283.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
gi|448282778|ref|ZP_21474060.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
gi|289531370|gb|ADD05721.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
gi|445575393|gb|ELY29868.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
Length = 976
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C CS+ +L ++E ++F+
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLVEDEREEFQ 118
>gi|300394196|gb|ADK11724.1| DNA-directed RNA polymerase II subunit one [Amylocorticium
subsulphureum]
Length = 228
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSRLE 135
HFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK+R+
Sbjct: 1 HFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDPNF--ADKIRHMRDPKARMA 58
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
+ CKTK CE + D G DGEE +K GCG +QP + +G+ + +YK
Sbjct: 59 VVWAHCKTKMVCEPDEPKDENE--GADGEES-KKGHGGCGHVQPVIRKEGLKLFVQYK-- 113
Query: 196 RKKNDDQ 202
+ K+DD+
Sbjct: 114 KPKDDDE 120
>gi|68563751|gb|AAY99014.1| RNA polymerase II largest subunit [Cortinarius atrovirens]
Length = 213
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK-IRHPKSRLE 135
PGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F ++ IR PK+R+
Sbjct: 2 PGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFGDKIRHIRDPKNRMA 61
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK +
Sbjct: 62 VVWAHCKTKMVCEPDDPKEEGA--DPDXEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK-K 117
Query: 196 RKKNDDQGQLPEPVER 211
K +DD+ + +P +R
Sbjct: 118 TKDDDDEVKSMQPDKR 133
>gi|169247106|gb|ACA51444.1| RNA polymerase II largest subunit, partial [Metschnikowia
drosophilae]
Length = 226
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L D+ + A++IR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLVDDSNPLMAQAIRIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEG---GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
CKTK CE DE V+S G GCG QPT+ DG+ + +K Q
Sbjct: 61 NVCKTKMVCEADTVNDEGQVVSGRG------------GCGHTQPTVRRDGLKLWGTWK-Q 107
Query: 196 RKKNDDQGQLPE 207
K DD Q PE
Sbjct: 108 NKTYDDSEQ-PE 118
>gi|169247234|gb|ACA51508.1| RNA polymerase II largest subunit, partial [Candida torresii]
Length = 226
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 17/132 (12%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L D+ + A++IR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLVDDSNPLMAQAIRIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEG---GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQ 195
CKTK CE DE V+S G GCG QPT+ DG+ + +K Q
Sbjct: 61 NVCKTKMVCEADTVNDEGQVVSGRG------------GCGHTQPTVRRDGLKLWGTWK-Q 107
Query: 196 RKKNDDQGQLPE 207
K DD Q PE
Sbjct: 108 NKTYDDSEQ-PE 118
>gi|300394192|gb|ADK11722.1| DNA-directed RNA polymerase II subunit one [Anomoloma myceliosum]
Length = 232
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADVSDPNF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAE 191
+R+ + CK+K CE + + G + +E +K GCG +QP + +G+ + +
Sbjct: 59 ARMAVVWAHCKSKMVCEPDEPKEEGE--GAENDES-KKGHGGCGHVQPLIRKEGLKLFVQ 115
Query: 192 YKAQRKKNDDQGQL 205
YK + ++++ L
Sbjct: 116 YKKPKDEDEEVKSL 129
>gi|288561071|ref|YP_003424557.1| DNA-directed RNA polymerase subunit A' RpoA1 [Methanobrevibacter
ruminantium M1]
gi|288543781|gb|ADC47665.1| DNA-directed RNA polymerase subunit A' RpoA1 [Methanobrevibacter
ruminantium M1]
Length = 926
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 23 LSPDEIRKMSVTEIDHGKTT-ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFG 81
+SPD+IR+MSV I T E G P+ GL D RLG ID KC TC GEC GHFG
Sbjct: 1 MSPDQIREMSVVNITRPDTYDEDGYPIENGLMDSRLGVIDPSLKCRTCGEKGGECQGHFG 60
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
++LA+P+ H+GF + I+R C C ++L D
Sbjct: 61 MIDLARPVIHVGFGDDIHKILRSTCNECGRVLLD 94
>gi|110629946|gb|ABG80489.1| RNA polymerase II largest subunit [Cortinarius albertii]
Length = 230
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 82/138 (59%), Gaps = 9/138 (6%)
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSR 133
PGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH P++R
Sbjct: 1 PGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPQNR 58
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
+ + CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 59 MAVVWAHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK 115
Query: 194 AQRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 116 -KTKDDDDEVKSMQPDKR 132
>gi|448711917|ref|ZP_21701460.1| DNA-directed RNA polymerase subunit A' [Halobiforma nitratireducens
JCM 10879]
gi|445791002|gb|EMA41651.1| DNA-directed RNA polymerase subunit A' [Halobiforma nitratireducens
JCM 10879]
Length = 975
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|371943667|gb|AEX61495.1| DNA-directed RNA polymerase subunit 1 [Megavirus courdo7]
Length = 1502
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT----ERGMPMAGGLSDLRLGTIDKRFKCE 67
V + V+F I +++ K S +G T P+ GG+ D RLG + + +C
Sbjct: 15 VEPITAVEFRIYGNNDVIKYSAISDPNGITVAEIQNNNEPVQGGVIDRRLGVTESKSECG 74
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC +CPGHFGH++ +P+FH GF+ + I+ C+C C+K+L + L+
Sbjct: 75 TCGETALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCNKLLVHRNEAAIDKLLRD 134
Query: 128 RHPKSRLEQILCACKTKNKCE 148
+H K R +I CK C+
Sbjct: 135 KHGKQRFAEIRSICKGITHCQ 155
>gi|33637590|gb|AAQ23939.1| RNA polymerase II largest subunit [Inocybe geophylla]
Length = 229
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 11/138 (7%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSRL 134
GHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+R+
Sbjct: 1 GHFGHIELARPVFHPGFLVKVKKILESICVNCGKLKADISDPNF--ADKIRHIRDPKTRM 58
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKR-KSGCGALQPTLTIDGMNMIAEYK 193
+ CKTKN CE D + G D E KR GCG QP + +G+ + +YK
Sbjct: 59 GVVWSHCKTKNVCETDDPKEE----GADAESDETKRGHGGCGHFQPQIRKEGLKLFLQYK 114
Query: 194 AQRKKNDDQGQLPEPVER 211
+ K +DD+ + +P R
Sbjct: 115 -KTKDDDDEIKSSQPDRR 131
>gi|408691240|gb|AFU81992.1| RNA polymerase II subunit 1, partial [Morchella esculentoides]
Length = 239
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCA 140
GH+ELAKP++H+GF+ + ++ VC+NCSKI DE + +F A KIR PK+R +
Sbjct: 1 GHIELAKPVYHVGFLNKIKKVLETVCYNCSKIKLDESNPQFADACKIREPKARFNAVWRL 60
Query: 141 CKTKNKCEGGDEI-DVLSLLGHD-GEEPLRKRK-SGCGALQPTLTIDGMNMIAEYKAQRK 197
CK K+ C+ + D + G D G P +K+ GCG QPT+ +G+ +I +K +
Sbjct: 61 CKAKSTCDSDNTAGDEENNFGDDTGTNPEKKKSHGGCGNKQPTIRREGLRLIGTWKPDKD 120
Query: 198 KNDDQGQ 204
++ Q
Sbjct: 121 AQEETTQ 127
>gi|385804832|ref|YP_005841232.1| DNA-directed RNA polymerase subunit A' (subunit A) [Haloquadratum
walsbyi C23]
gi|339730324|emb|CCC41653.1| DNA-directed RNA polymerase subunit A' (subunit A) [Haloquadratum
walsbyi C23]
Length = 978
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ +QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C+TC S+
Sbjct: 8 EIGAIQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECKTCGSH 67
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALK 126
G C GHFGH+ELA P+ H+GF K + ++R C +C + L + E ++F+ L+
Sbjct: 68 SGSCNGHFGHIELAAPVIHVGFTKLIRRLLRSTCRSCGHLALTENEREEFREGLQ 122
>gi|429191196|ref|YP_007176874.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
gi|448326613|ref|ZP_21515962.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
SP2]
gi|429135414|gb|AFZ72425.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
gi|445610905|gb|ELY64670.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
SP2]
Length = 974
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC + G C
Sbjct: 12 INFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKHSGSC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
GHFGH+ELA P+ H+GF K + ++R C CS++L E++
Sbjct: 72 NGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDE 113
>gi|90767209|gb|ABD97932.1| RNA polymerase II largest subunit [Physalacria bambusae]
Length = 233
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 12/139 (8%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKSRL 134
GHFGH+ELA+P+FH GF+ + I+ C+C NC K+ AD DD F A KIRH PK R+
Sbjct: 1 GHFGHIELARPVFHPGFIIKVKKILECICVNCGKLKADISDDNF--ASKIRHLRDPKKRM 58
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEE--PLRKRKSGCGALQPTLTIDGMNMIAEY 192
+ CKTK C E + L G DGE+ L+K GCG QP + +G+ + A+Y
Sbjct: 59 AAVWGHCKTKMIC----EAEELKEEGEDGEQDGSLKKGHGGCGHQQPLIRKEGLKLFAQY 114
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 115 K-KAKDDDDEIKSIQPDKR 132
>gi|169247250|gb|ACA51516.1| RNA polymerase II largest subunit, partial [Scheffersomyces
spartinae]
Length = 230
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 5/119 (4%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A++IR PK R +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNPAMAQAIRIRDPKKRFNAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQR 196
CKTK CE D ID + D + + GCG QPT+ DG+ + +K +
Sbjct: 61 WNLCKTKMICE-ADVIDEDNSNTSDN----KPTRGGCGHTQPTVRRDGLKLWGTWKQNK 114
>gi|363540008|ref|YP_004894424.1| mg373 gene product [Megavirus chiliensis]
gi|448825325|ref|YP_007418256.1| DNA-directed RNA polymerase subunit 1 [Megavirus lba]
gi|350611173|gb|AEQ32617.1| DNA-directed RNA polymerase subunit 1 [Megavirus chiliensis]
gi|425701254|gb|AFX92416.1| DNA-directed RNA polymerase subunit 1 [Megavirus courdo11]
gi|444236510|gb|AGD92280.1| DNA-directed RNA polymerase subunit 1 [Megavirus lba]
Length = 1491
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKTT----ERGMPMAGGLSDLRLGTIDKRFKCE 67
V + V+F I +++ K S +G T P+ GG+ D RLG + + +C
Sbjct: 15 VEPITAVEFRIYGNNDVIKYSAISDPNGITVAEIQNNNEPVQGGVIDRRLGVTESKSECG 74
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC +CPGHFGH++ +P+FH GF+ + I+ C+C C+K+L + L+
Sbjct: 75 TCGETALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCNKLLVHRNEAAIDKLLRD 134
Query: 128 RHPKSRLEQILCACKTKNKCE 148
+H K R +I CK C+
Sbjct: 135 KHGKQRFAEIRSICKGITHCQ 155
>gi|448627103|ref|ZP_21671778.1| DNA-directed RNA polymerase subunit A' [Haloarcula vallismortis
ATCC 29715]
gi|445759731|gb|EMA11007.1| DNA-directed RNA polymerase subunit A' [Haloarcula vallismortis
ATCC 29715]
Length = 969
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T++ T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGQLSFGLMDPEEYREMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
G C GHFGH+ELA P+ H+GF K + ++R C +CS++ DE +
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFAKLIRRLLRGTCRDCSRLCLDEHE 114
>gi|74830406|emb|CAI39063.1| DNA-directed RNA polymerase II largest subunit [Paramecium
tetraurelia]
Length = 1751
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMS-VTEIDHGKTTE-RGMPMAGGLSDLRLGTIDK 62
FT+S +AKVR V+F ++S + I++ + EI +T E G P GL+DLR+G
Sbjct: 8 FTYSTAPIAKVRRVEFGLMSHELIKEWTGDIEIKELQTNELDGTPKQNGLNDLRMGVNTN 67
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD--- 119
KC+TC C GHFG +EL KP++H+GF++ + +++C+C +C K+ + +D
Sbjct: 68 AQKCKTCGET-KYCQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQSEDAWQ 126
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCE 148
F+ A + R + RL +I+ KCE
Sbjct: 127 SFQKAKEHRLNRKRLNEIVKLLGRIEKCE 155
>gi|145490118|ref|XP_001431060.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398162|emb|CAK63662.1| unnamed protein product [Paramecium tetraurelia]
Length = 1750
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMS-VTEIDHGKTTE-RGMPMAGGLSDLRLGTIDK 62
FT+S +AKVR V+F ++S + I++ + EI +T E G P GL+DLR+G
Sbjct: 8 FTYSTAPIAKVRRVEFGLMSHELIKEWTGDIEIKELQTNELDGTPKQNGLNDLRMGVNTN 67
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDD--- 119
KC+TC C GHFG +EL KP++H+GF++ + +++C+C +C K+ + +D
Sbjct: 68 AQKCKTCGET-KYCQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQSEDAWQ 126
Query: 120 KFKLALKIRHPKSRLEQILCACKTKNKCE 148
F+ A + R + RL +I+ KCE
Sbjct: 127 SFQKAKEHRLNRKRLNEIVKLLGRIEKCE 155
>gi|448466834|ref|ZP_21599256.1| DNA-directed RNA polymerase subunit A' [Halorubrum kocurii JCM
14978]
gi|445813260|gb|EMA63240.1| DNA-directed RNA polymerase subunit A' [Halorubrum kocurii JCM
14978]
Length = 968
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC S+ G C
Sbjct: 5 IDFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECRTCGSHSGSC 64
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLALKIRHPKSRLE 135
GHFGH+ELA P+ H+GF K + ++R C C K+ DE + D+F + R E
Sbjct: 65 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGKLALDEAQRDEF---------RDRYE 115
Query: 136 QILCACKTKNKCEGGDEIDVLS-------------LLGHDGEEPLRKRKSGCGALQPTLT 182
+ K G DE DVL G + ++ + +Q L+
Sbjct: 116 --------RAKELGDDEHDVLKAAVRQARKASTCPFCGEPQADIKHEKPTTYYEVQDVLS 167
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
D IA ++ DD G P+ + K + +R
Sbjct: 168 GDYSERIAAAMQPDEEEDDPGTSPQELAEKTDIALDR 204
>gi|68563799|gb|AAY99038.1| RNA polymerase II largest subunit [Cortinarius magicus]
Length = 231
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL-KIRHPKSRL 134
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F + I PK+R+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADILDPNFTNKIHHIHDPKNRM 60
Query: 135 EQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKA 194
+ CKTK CE D + + D EEP +K GCG +QP + +G+ + +YK
Sbjct: 61 AVVWTHCKTKMVCEPDDPKEEGA--DPDNEEP-KKGHGGCGHVQPQIRKEGLKLFVQYK- 116
Query: 195 QRKKNDDQGQLPEPVER 211
+ K +DD+ + +P +R
Sbjct: 117 KTKDDDDEMKSLQPDKR 133
>gi|377684877|gb|AFB74457.1| RNA polymerase II largest subunit, partial [Candida yuchorum]
Length = 220
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 70/129 (54%), Gaps = 11/129 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNLAMSQAMKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CK+K CE + ++ E ++ GCG QPT+ DG+ + +K K
Sbjct: 61 NCCKSKMVCETDN---------NEEENTDTPKRGGCGHTQPTIRRDGLKLWGTWK--HNK 109
Query: 199 NDDQGQLPE 207
N D+ PE
Sbjct: 110 NFDENDQPE 118
>gi|224003141|ref|XP_002291242.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220973018|gb|EED91349.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1422
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 86/144 (59%), Gaps = 12/144 (8%)
Query: 14 KVRMVQFSILSPDEIRKMS---VTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
++ +QF +LSP ++++++ VT D +R +P G+ D RLG DK C TC
Sbjct: 37 QISHLQFGLLSPSDMQRLAEFQVTSRDLFTMPQR-LPARNGVLDPRLGVSDKVSTCATCK 95
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
+ +C GHFG++ LA P+FHIG++K L +++C+C +CS++L + + K L K+R+P
Sbjct: 96 LKLADCAGHFGYIRLALPVFHIGYLKHTLNLLQCICKSCSRVLLTDAERKMLLK-KMRNP 154
Query: 131 K-------SRLEQILCACKTKNKC 147
+ S +++L CK ++C
Sbjct: 155 RTDVLGKASVFKKVLDKCKKAHQC 178
>gi|110629952|gb|ABG80492.1| RNA polymerase II largest subunit [Cortinarius dalecarlicus]
Length = 225
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PKS 132
CPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK+
Sbjct: 1 CPGHFGHIELARPVFHPGFIVKVKKILESICVNCGKLKADTLDPNF--ADKIRHIRDPKN 58
Query: 133 RLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
R+ + CKTK CE D + D EEP +K GCG +Q + +G + +Y
Sbjct: 59 RMAVVWAHCKTKMVCEPDDPKE--EGADPDNEEP-KKGHGGCGYVQLQIRKEGFKLFVQY 115
Query: 193 KAQRKKNDDQGQLPEPVER 211
K + K +DD+ + +P +R
Sbjct: 116 K-KTKDDDDEVKSMQPDKR 133
>gi|47176890|gb|AAT12597.1| RNA polymerase II largest subunit [Yarrowia lipolytica]
Length = 210
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 84 ELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCACKT 143
ELAKP+FHIGF+ + I VCF+C K+L DE + +F A++IR PK R + CKT
Sbjct: 1 ELAKPVFHIGFIAKIKKICESVCFHCGKVLLDENNKQFAQAIRIRDPKRRFNAVWSLCKT 60
Query: 144 KNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQG 203
K C E DV + DG ++ GCG +QPT+ DG+ + +K + K DD G
Sbjct: 61 KMVC----ETDVPT--EDDGSGVVKHSHGGCGNIQPTVRRDGLKLWGTWK-RGKNGDDMG 113
Query: 204 QLPE 207
PE
Sbjct: 114 DSPE 117
>gi|351737659|gb|AEQ60694.1| DNA directed RNA polymerase (II) subunit 1 [Acanthamoeba
castellanii mamavirus]
Length = 1478
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT------TERGMPMAGGLSDLRLGTIDKRFK 65
+ V ++F I S + I + S +G T + P+ GG+ D RLG + +
Sbjct: 15 IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C TC CPGHFGH++ +P+FH+G++ L I+ C+C C+K+L + + + +
Sbjct: 75 CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALI 134
Query: 126 KIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
K + K R +I CK C+ K GCG ++ID
Sbjct: 135 KNKQGKQRFAEIRSICKKVTHCQ--------------------KENYGCGTPAHKISID- 173
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVER 211
K+N + L EPV+R
Sbjct: 174 -----------KRNGNIFLLAEPVKR 188
>gi|405168246|gb|AFS18224.1| RNA polymerase II largest subunit, partial [Scheffersomyces
shehatae]
gi|405168248|gb|AFS18225.1| RNA polymerase II largest subunit, partial [Scheffersomyces
shehatae]
Length = 236
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNIGMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLG-----HDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
CKTK C E D+ G + P + GCG QPT+ DG+ + +K
Sbjct: 61 AVCKTKMVC----ETDIAEESGNELNPNRNNNPATTTRGGCGHTQPTIRRDGLKLWGTWK 116
Query: 194 AQRKKNDDQGQLPE 207
K+ D+ + PE
Sbjct: 117 --HNKSFDENEQPE 128
>gi|169247190|gb|ACA51486.1| RNA polymerase II largest subunit, partial [Candida kruisii]
Length = 221
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 68/130 (52%), Gaps = 15/130 (11%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP+FHIGF+ + CVC +C KIL DE + A+KIR PK R +
Sbjct: 1 FGHIELAKPVFHIGFIAKIKKACECVCMHCGKILLDETNQGMAQAIKIRDPKKRFNAVWS 60
Query: 140 ACKTKNKCEG--GDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CKTK CE GDE + P ++ GCG QP + DG+ + +K
Sbjct: 61 ICKTKMVCEADTGDE-----------DAPDTNKRGGCGHTQPVIRRDGLKLWGTWK--HN 107
Query: 198 KNDDQGQLPE 207
K D+ + PE
Sbjct: 108 KQFDENEQPE 117
>gi|169247160|gb|ACA51471.1| RNA polymerase II largest subunit, partial [Candida ernobii]
Length = 225
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 12/129 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELA+P+FHIGF+ + + VC +C K+L DE + F+ A+KI+ PK R +
Sbjct: 1 HFGHIELARPVFHIGFIPKIKKVCESVCMHCGKLLMDESNPLFEQAIKIKDPKKRFHAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE D + G+D + + GCG QPT+ DG+ + + KK
Sbjct: 61 SLCKTKMVCEA----DAPAEDGNDEQ----IARGGCGNNQPTVRKDGLKLWGTW----KK 108
Query: 199 NDDQGQLPE 207
N D+ + PE
Sbjct: 109 NTDENEQPE 117
>gi|404553629|gb|AFR79274.1| RNA polymerase II largest subunit, partial [Candida
duobushaemulonii]
Length = 222
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L D+ + A++IR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLVDDANPLMAQAIRIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE DV+ + E + + GCG QPT+ DGM + +K + K
Sbjct: 61 NVCKTKMVCEA----DVV-----NDEGQVTSGRGGCGHTQPTVRRDGMKLWGTWK--QNK 109
Query: 199 NDDQGQLPE 207
++ + PE
Sbjct: 110 QFEENEQPE 118
>gi|362412312|gb|AEW12875.1| RPB1, partial [Candida bolitotheri]
Length = 223
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP+FHIGF+ + VC +C K+L DE + A+KIR PK R +
Sbjct: 1 FGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETNMAMAQAIKIRDPKKRFNAVWN 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKN 199
CKTK CE D E P ++ GCG QPT+ DG+ + +K KN
Sbjct: 61 CCKTKMVCETDPP---------DDENPTGHKRGGCGHTQPTIRRDGLKLWGTWK--HNKN 109
Query: 200 DDQGQLPE 207
D+G PE
Sbjct: 110 FDEGDQPE 117
>gi|358441939|gb|AEU11320.1| RPB1 [Funneliformis mosseae]
Length = 535
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
H+ELAKP+FHIGF+ + I+ C+C +CSK+ D+ + KF +A KIR PK RL + C
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFAVARKIRDPKRRLRAVWDIC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEE---------PLRKRKS----------------GCGA 176
K+K CE G+E + D E+ P+ +R + GCGA
Sbjct: 61 KSKTICEKGEEQENDPDKTSDYEDDYIPNGQNKPIPQRTTTPAEDLGLIKVKKPHGGCGA 120
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLT 216
QPT+ DG+ + YKA R + GQ E +Q LT
Sbjct: 121 RQPTIRKDGLKLYMNYKA-RDSEEQTGQ-----ETRQVLT 154
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
H+ELAKP+FHIGF+ + I+ C+C +CSK+ D+ + KF +A KIR PK RL + C
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFAVARKIRDPKRRLRAVWDIC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEE---------PLRKRKS----------------GCGA 176
K+K CE G+E + D E+ P+ +R + GCGA
Sbjct: 61 KSKTICEKGEEQENDPDKTSDYEDDYIPNGQNKPIPQRTTTPAEDLGLIKVKKPHGGCGA 120
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLT 216
QPT+ DG+ + YKA R + GQ E +Q LT
Sbjct: 121 RQPTIRKDGLKLYMNYKA-RDSEEQTGQ-----ETRQVLT 154
>gi|358441929|gb|AEU11315.1| RPB1 [Funneliformis coronatum]
Length = 534
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
H+ELAKP+FHIGF+ + I+ C+C +CSK+ D+ + KF +A KIR PK RL + C
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFAVARKIRDPKRRLRAVWDIC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEE---------PLRKRKS----------------GCGA 176
K+K CE G+E + D E+ P+ +R + GCGA
Sbjct: 61 KSKTICEKGEEQENDPDKTSDYEDDYIPNGQHKPIPQRTTTPAEDLGLIKVKKPHGGCGA 120
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLT 216
QPT+ DG+ + YKA R + GQ E +Q LT
Sbjct: 121 RQPTIRKDGLKLYMNYKA-RDSEEQTGQ-----ETRQVLT 154
>gi|169247186|gb|ACA51484.1| RNA polymerase II largest subunit, partial [Candida insectorum]
Length = 221
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 14/125 (11%)
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQI 137
GHFGH+ELAKP+FHIGF+ + CVC +C K+L DE + A+KIR PK R + +
Sbjct: 1 GHFGHIELAKPVFHIGFIAKIKKTCECVCMHCGKLLLDESNPAMAQAIKIRDPKRRFQAV 60
Query: 138 LCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRK 197
CK+K CE E + + GCG QPT+ DG+ + +K Q K
Sbjct: 61 WTLCKSKMVCEA-------------DPEDVENGRGGCGHTQPTVRKDGLRLWGTWK-QNK 106
Query: 198 KNDDQ 202
++Q
Sbjct: 107 NEEEQ 111
>gi|169247168|gb|ACA51475.1| RNA polymerase II largest subunit, partial [Candida geochares]
Length = 224
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 81 GHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCA 140
GH+ELAKP+FH+G++ + I+ VC +C +I +DE + +F A++IR+ K R ++
Sbjct: 1 GHIELAKPVFHVGYITKIKKILETVCVHCGRIKSDESNPEFAAAIRIRNAKKRFARVWEI 60
Query: 141 CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKND 200
CK++ C G D+I GE+ + GCG QPT+ DG+ ++ +K + +
Sbjct: 61 CKSRMICGGADDI--------KGEDGKKHNHGGCGNRQPTIRKDGLRLVGSWKRDKNSDL 112
Query: 201 DQGQ 204
DQ +
Sbjct: 113 DQAE 116
>gi|43542|emb|CAA40426.1| RNA polymerase subunit A [Halobacterium salinarum]
Length = 971
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R MS T++ T + G P+ GL D RLG ID +C+TC G C
Sbjct: 13 ISFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGQRSGGC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC-SKILADEEDDKFKLAL-KIRHPKSRL 134
GHFGH+ELA P+ H+GF K + ++R C C S +L +EE D+++ L + R + +
Sbjct: 73 NGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENLDRTRSLRQDV 132
Query: 135 EQILCA----CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
++ A + K+ C E+ + ++ + +Q L D IA
Sbjct: 133 SDVMTAAIREARKKDHCPHCGEVQY---------DVKHEKPTTYYEVQQVLASDYSERIA 183
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ DD G P+ + + + R
Sbjct: 184 ASMQPDEDEDDAGVSPQELAEQTDIDISR 212
>gi|16554525|ref|NP_444249.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. NRC-1]
gi|169237149|ref|YP_001690349.1| DNA-directed RNA polymerase subunit A' [Halobacterium salinarum R1]
gi|338819300|sp|B0R8D4.1|RPOA1_HALS3 RecName: Full=DNA-directed RNA polymerase subunit A'
gi|338819301|sp|P0CX02.1|RPOA1_HALSA RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167728215|emb|CAP15003.1| DNA-directed RNA polymerase subunit A' (subunit A) [Halobacterium
salinarum R1]
Length = 971
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R MS T++ T + G P+ GL D RLG ID +C+TC G C
Sbjct: 13 ISFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGQRSGGC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC-SKILADEEDDKFKLAL-KIRHPKSRL 134
GHFGH+ELA P+ H+GF K + ++R C C S +L +EE D+++ L + R + +
Sbjct: 73 NGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENLDRTRSLRQDV 132
Query: 135 EQILCA----CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
++ A + K+ C E+ + ++ + +Q L D IA
Sbjct: 133 SDVMTAAIREARKKDHCPHCGEVQY---------DVKHEKPTTYYEVQQVLASDYSERIA 183
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ DD G P+ + + + R
Sbjct: 184 ASMQPDEDEDDAGVSPQELAEQTDIDISR 212
>gi|311977893|ref|YP_003987013.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
gi|81990383|sp|Q7T6X5.2|RPO1_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 1
gi|55664871|gb|AAQ09585.2| DNA directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
gi|308204869|gb|ADO18670.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
gi|339061439|gb|AEJ34743.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
mimivirus]
Length = 1495
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT------TERGMPMAGGLSDLRLGTIDKRFK 65
+ V ++F I S + I + S +G T + P+ GG+ D RLG + +
Sbjct: 15 IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C TC CPGHFGH++ +P+FH+G++ L I+ C+C C+K+L + + + +
Sbjct: 75 CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALI 134
Query: 126 KIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
K + K R +I CK C+ K GCG ++ID
Sbjct: 135 KNKQGKQRFAEIRSICKKVTHCQ--------------------KENYGCGTPAHKISID- 173
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVER 211
K+N + L EPV+R
Sbjct: 174 -----------KRNGNIFLLAEPVKR 188
>gi|398257327|gb|EJN40935.1| DNA directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
lentillevirus]
Length = 1495
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT------TERGMPMAGGLSDLRLGTIDKRFK 65
+ V ++F I S + I + S +G T + P+ GG+ D RLG + +
Sbjct: 15 IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C TC CPGHFGH++ +P+FH+G++ L I+ C+C C+K+L + + + +
Sbjct: 75 CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALI 134
Query: 126 KIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
K + K R +I CK C+ K GCG ++ID
Sbjct: 135 KNKQGKQRFAEIRSICKKVTHCQ--------------------KENYGCGTPAHKISID- 173
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVER 211
K+N + L EPV+R
Sbjct: 174 -----------KRNGNIFLLAEPVKR 188
>gi|58395935|gb|AAW72760.1| RNA polymerase II largest subunit [Stereum hirsutum]
Length = 242
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 75 ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRH---PK 131
ECPGHFGH+ELA+P+FH GF+ + I+ +C NC K+ AD D F A KIRH PK
Sbjct: 1 ECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADISDPHF--ADKIRHVRDPK 58
Query: 132 SRLEQILCACKTKNKCEGGDEIDVLSLLGHDG--EEPLRKRKSGCGALQPTLTIDGMNMI 189
+R+ + CK K CE D G DG + P + GCG QP + +G+ +
Sbjct: 59 TRMAVVWGHCKGKMXCEA----DEPKEDGEDGAAQGPAKPGHGGCGHPQPQIRKEGLKLF 114
Query: 190 AEYKAQRKKNDDQGQL 205
+YK + ++D L
Sbjct: 115 LQYKKSKDDDEDMKSL 130
>gi|359340437|gb|AEV24383.1| RPB1, partial [Colletotrichum tofieldiae]
gi|359340439|gb|AEV24384.1| RPB1, partial [Colletotrichum tofieldiae]
gi|359340441|gb|AEV24385.1| RPB1, partial [Colletotrichum tofieldiae]
Length = 235
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 9/121 (7%)
Query: 80 FGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILC 139
FGH+ELAKP++H GF+K + ++ VC NCSK+LAD D +F A+ R PK R ++
Sbjct: 1 FGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFLQAVNTRDPKVRFNRVWN 60
Query: 140 ACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKS-----GCGALQPTLTIDGMNMIAEYKA 194
CK K +CE +V DGE L +++ GCG +QP + + +IA+++A
Sbjct: 61 ICKKKTRCEN----EVKEQKPDDGEYGLNMKQAPVNHGGCGNIQPRVRHKALQLIAKFEA 116
Query: 195 Q 195
Q
Sbjct: 117 Q 117
>gi|300712256|ref|YP_003738070.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
gi|448295949|ref|ZP_21486010.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
gi|299125939|gb|ADJ16278.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
gi|445582672|gb|ELY37012.1| DNA-directed RNA polymerase subunit A' [Halalkalicoccus jeotgali
B3]
Length = 986
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T+I T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 QIDRIDFGLMDPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSK-ILADEEDDKFKLAL 125
G C GHFG++ELA P+ H+GF K + ++R C CS+ +L ++E ++F+ +L
Sbjct: 69 SGACNGHFGNIELAAPVIHVGFTKLIRRLLRGTCRECSRLLLTEDEKEEFRESL 122
>gi|405168254|gb|AFS18228.1| RNA polymerase II largest subunit, partial [Candida sp. 1 SOS-2012]
gi|405168256|gb|AFS18229.1| RNA polymerase II largest subunit, partial [Candida sp. 1 SOS-2012]
Length = 236
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 13/135 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNIGMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKC------EGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
CKTK C EGG+E++ P + GCG QPT+ DG+ + +
Sbjct: 61 AVCKTKMVCETDIAEEGGNELNPNRN-----NNPATTTRGGCGHTQPTIRRDGLKLWGTW 115
Query: 193 KAQRKKNDDQGQLPE 207
K K+ D+ + PE
Sbjct: 116 K--HNKSFDENEQPE 128
>gi|404553625|gb|AFR79272.1| RNA polymerase II largest subunit, partial [Candida
duobushaemulonii]
Length = 156
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L D+ + A++IR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLVDDANPLMAQAIRIRDPKKRFNAVW 60
Query: 139 CACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKK 198
CKTK CE DV+ + E + + GCG QPT+ DGM + +K ++
Sbjct: 61 NVCKTKMVCEA----DVV-----NDEGQVTSGRGGCGHTQPTVRRDGMKLWGTWKQNKQF 111
Query: 199 NDDQ 202
+++
Sbjct: 112 EENE 115
>gi|281204162|gb|EFA78358.1| RNA polymerase III [Polysphondylium pallidum PN500]
Length = 1393
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 12/144 (8%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGK---TTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
K+ +QF ILSPD++ +S EI + + + RG PM G D RLGT DK C+TC
Sbjct: 14 KIGHIQFGILSPDDMISLSHVEIINRELFDQSNRG-PMQYGCLDNRLGTSDKSIICKTCG 72
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
++ +C GHFG+++L P+FHIG+ K + I++ +C CS IL D+E K KIR+
Sbjct: 73 LSIVDCVGHFGYIKLQLPVFHIGYFKNITNILQMICKGCSAILLDDE-KKTTFLRKIRNR 131
Query: 131 K-------SRLEQILCACKTKNKC 147
K + L++I C+ K C
Sbjct: 132 KLDVLQRRALLKKIYLECRKKKFC 155
>gi|448497568|ref|ZP_21610521.1| DNA-directed RNA polymerase subunit A' [Halorubrum coriense DSM
10284]
gi|445699799|gb|ELZ51819.1| DNA-directed RNA polymerase subunit A' [Halorubrum coriense DSM
10284]
Length = 970
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC S+ G C
Sbjct: 5 IDFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECRTCGSHSGSC 64
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHPKSRLE 135
GHFGH+ELA P+ H+GF K + ++R C C ++ L D + D+F + R E
Sbjct: 65 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLALDDAQRDEF---------RDRYE 115
Query: 136 QILCACKTKNKCEGGDEIDVLS-------------LLGHDGEEPLRKRKSGCGALQPTLT 182
+ K G DE DVL G + ++ + +Q L+
Sbjct: 116 --------RAKELGDDEHDVLKAAVRQARKASTCPFCGEPQADIKHEKPTTYYEVQDVLS 167
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
D IA ++ DD G P+ + K + +R
Sbjct: 168 GDYSERIAAAMQPDEEEDDPGTSPQELAEKTDIAVDR 204
>gi|448494509|ref|ZP_21609496.1| DNA-directed RNA polymerase subunit A' [Halorubrum californiensis
DSM 19288]
gi|445689344|gb|ELZ41584.1| DNA-directed RNA polymerase subunit A' [Halorubrum californiensis
DSM 19288]
Length = 970
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC S+ G C
Sbjct: 5 IDFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECRTCGSHSGSC 64
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKIRHPKSRLE 135
GHFGH+ELA P+ H+GF K + ++R C C ++ L D + D+F + R E
Sbjct: 65 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLALDDAQRDEF---------RDRYE 115
Query: 136 QILCACKTKNKCEGGDEIDVLS-------------LLGHDGEEPLRKRKSGCGALQPTLT 182
+ K G DE DVL G + ++ + +Q L+
Sbjct: 116 --------RAKELGDDEHDVLKAAVRQARKASTCPFCGEPQADIKHEKPTTYYEVQDVLS 167
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
D IA ++ DD G P+ + K + +R
Sbjct: 168 GDYSERIAAAMQPDEEEDDPGTSPQELAEKTDIAVDR 204
>gi|448664667|ref|ZP_21684305.1| DNA-directed RNA polymerase subunit A' [Haloarcula amylolytica JCM
13557]
gi|445774254|gb|EMA25275.1| DNA-directed RNA polymerase subunit A' [Haloarcula amylolytica JCM
13557]
Length = 969
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ + F ++ P+E R+MS T++ T + G P+ GL D RLG ID +C+TC +
Sbjct: 9 EIGQLSFGLMDPEEYREMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGKH 68
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
G C GHFGH+ELA P+ H+GF K + ++R C CS++ DE +
Sbjct: 69 SGSCNGHFGHIELAAPVIHVGFAKLIRRLLRGTCRECSRLCLDEHE 114
>gi|448622535|ref|ZP_21669229.1| DNA-directed RNA polymerase subunit A' [Haloferax denitrificans
ATCC 35960]
gi|445754617|gb|EMA06022.1| DNA-directed RNA polymerase subunit A' [Haloferax denitrificans
ATCC 35960]
Length = 974
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+QF ++ P+ R MS T++ T + G P+ GL D RLG ID +C TC + G C
Sbjct: 10 IQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLQCRTCGQHSGSC 69
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFK 122
GHFGH+ELA P+ H+GF K + ++R C C ++ L EE D+++
Sbjct: 70 NGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGRLSLTQEEADEYR 116
>gi|358441933|gb|AEU11317.1| RPB1 [Funneliformis mosseae]
Length = 617
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
H+ELAKP+FHIGF+ + I+ C+C +CSK+ D+ + KF +A KIR PK RL + C
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFAVARKIRDPKRRLRAVWDIC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEE---------PLRKRKS----------------GCGA 176
K+K CE G+E + D E+ P+ +R + GCGA
Sbjct: 61 KSKTICEKGEEQENDPDKTSDYEDDYIPNGQNKPIPQRTTTPAEDLGLIKVKKPHGGCGA 120
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLT 216
QPT+ DG+ + YKA R + GQ E +Q LT
Sbjct: 121 RQPTIRKDGLKLYMNYKA-RDSEEQTGQ-----ETRQVLT 154
>gi|358441931|gb|AEU11316.1| RPB1 [Funneliformis mosseae]
gi|358441941|gb|AEU11321.1| RPB1 [Funneliformis mosseae]
Length = 603
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 82 HLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQILCAC 141
H+ELAKP+FHIGF+ + I+ C+C +CSK+ D+ + KF +A KIR PK RL + C
Sbjct: 1 HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFAVARKIRDPKRRLRAVWDIC 60
Query: 142 KTKNKCEGGDEIDVLSLLGHDGEE---------PLRKRKS----------------GCGA 176
K+K CE G+E + D E+ P+ +R + GCGA
Sbjct: 61 KSKTICEKGEEQENDPDKTSDYEDDYIPNGQNKPIPQRTTTPAEDLGLIKVKKPHGGCGA 120
Query: 177 LQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLT 216
QPT+ DG+ + YKA R + GQ E +Q LT
Sbjct: 121 RQPTIRKDGLKLYMNYKA-RDSEEQTGQ-----ETRQVLT 154
>gi|405168258|gb|AFS18230.1| RNA polymerase II largest subunit, partial [Scheffersomyces
insectosa]
gi|405168260|gb|AFS18231.1| RNA polymerase II largest subunit, partial [Scheffersomyces
insectosa]
Length = 236
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 73/135 (54%), Gaps = 13/135 (9%)
Query: 79 HFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSRLEQIL 138
HFGH+ELAKP+FHIGF+ + + CVC +C K+L DE + A+KIR PK R +
Sbjct: 1 HFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDETNIGMAQAIKIRDPKKRFNAVW 60
Query: 139 CACKTKNKC------EGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEY 192
CKTK C EGG+E L + P + GCG QPT+ DG+ + +
Sbjct: 61 AVCKTKMVCETDIAEEGGNE-----LNPNRNNNPTTTTRGGCGHTQPTIRRDGLKLWGTW 115
Query: 193 KAQRKKNDDQGQLPE 207
K K+ D+ + PE
Sbjct: 116 K--HNKSFDENEQPE 128
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,401,799,007
Number of Sequences: 23463169
Number of extensions: 135362899
Number of successful extensions: 291002
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3883
Number of HSP's successfully gapped in prelim test: 931
Number of HSP's that attempted gapping in prelim test: 281993
Number of HSP's gapped (non-prelim): 5116
length of query: 219
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 82
effective length of database: 9,144,741,214
effective search space: 749868779548
effective search space used: 749868779548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)