BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045123
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 321 bits (823), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 148/219 (67%), Positives = 182/219 (83%), Gaps = 2/219 (0%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M+ F FSP +V+KVR+VQF ILSPDEIR+MSV ++H +TTE+G P GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
D++ KCETC +NM ECPGHFG+LELAKPM+H+GFMKT+L+IMRCVCFNCSKILADEE+ K
Sbjct: 61 DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPT 180
FK A+KI++PK+RL++IL ACK K KC+GGD+ID + H +EP++K + GCGA QP
Sbjct: 121 FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDID--DVQSHSTDEPVKKSRGGCGAQQPK 178
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
LTI+GM MIAEYK QRKKND+ QLPEP ERKQTL A+R
Sbjct: 179 LTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADR 217
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 137/220 (62%), Gaps = 10/220 (4%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTI 60
M F S ++ KV+ VQF ILSPDEIR MSV ++H +T E G P AGGL D +GTI
Sbjct: 1 MAAFFPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTI 60
Query: 61 DKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
DK +C+TCS M ECPGHFGH+ELAKP+FHIGF+ T+L I+RCVC++CSK+L D +
Sbjct: 61 DKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHS 120
Query: 121 FKLALKIRHPKSRLEQILCACKTKNKCE-GGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
F+ ALKIR+ K RL ++ CK K C GG+E + L D E + GCG + P
Sbjct: 121 FRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLP 180
Query: 180 TLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+T + + +I E+K E +E+K L+AER
Sbjct: 181 KITKEDLKIIVEFKDVTD---------ESIEKKSVLSAER 211
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 182 bits (463), Expect = 1e-45, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 182 bits (463), Expect = 1e-45, Method: Composition-based stats.
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 7/201 (3%)
Query: 15 VRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ VQF +LSPDE+++MSVTE I + +TTE G P GGL D R G I++ +C+TC+ N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK--LALKIRHP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++RCVCF CSK+L D + K K LA P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KSRLEQILCACKTKNKCEGGDEID-VLSLLGHDGEEPLRKRK--SGCGALQPTLTIDGMN 187
K RL + CK KN CEGG+E+D + +G+E L K K GCG QP + G+
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 188 MIAEYKAQRKKNDDQGQLPEP 208
+ AE+K + + ++ L P
Sbjct: 198 LYAEWKHVNEDSQEKKILLSP 218
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 181 bits (458), Expect = 4e-45, Method: Composition-based stats.
Identities = 90/209 (43%), Positives = 127/209 (60%), Gaps = 9/209 (4%)
Query: 1 MENCFTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGM--PMAGGLSDLRLG 58
M F S + V+ VQF +LSP+E+R +SV +I++ +T ++ P GGL+D RLG
Sbjct: 1 MSRQFPHSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60
Query: 59 TIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ID+ FKC+TC +M ECPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE +
Sbjct: 61 SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESN 120
Query: 119 DKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQ 178
A++IR PK R + CK K CE DVL G +G EP R + GCG Q
Sbjct: 121 PAMAQAIRIRDPKKRFNAVWNLCKGKMICEA----DVLQDDG-EGNEPKRTSRGGCGHTQ 175
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
P + DG+ + +K + KN D+ + PE
Sbjct: 176 PVVRKDGLKLWGTWK--QNKNYDETEQPE 202
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 181 bits (458), Expect = 4e-45, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 20/221 (9%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTE--IDHGKTTERGMPMAGGLSDLRLGTIDKR 63
T S + +V+ VQF ILSPDEIR+MSVTE + +T E G P GGL D R G ID+
Sbjct: 5 TDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRT 64
Query: 64 FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK- 122
+C+TC+ NM ECPGHFGH++LAKP+FHIGF+ + I+RCVCF CSK+L + K K
Sbjct: 65 SRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKE 124
Query: 123 LALKIR-HPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRK---SGCGALQ 178
+ +K R P+ RL + CK K CEGG+++D L + ++P +K GCG Q
Sbjct: 125 IVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMD----LTKENQQPDPNKKPGHGGCGHYQ 180
Query: 179 PTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
P++ G+++ AE+K Q + D Q E+K ++AER
Sbjct: 181 PSIRRTGLDLTAEWKHQNE--DSQ-------EKKIVVSAER 212
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 123/210 (58%), Gaps = 20/210 (9%)
Query: 7 FSPFKVA--KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG--MPMAGGLSDLRLGTIDK 62
FSP V +V VQF ILSP+EIR MSV +I+ +T + P GGL D RLGTID+
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
+FKC+TC M +CPGHFGH+ELAKP+FHIGF+ + I+ CVC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 123 LALKIRHPKSRLEQILCACKTKNKCE-----GGDEIDVLSLLGHDGEEPLRKRKSGCGAL 177
+ R PK+RL + CKTK C+ G D D+ + + G GCGA
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGH-------GGCGAA 178
Query: 178 QPTLTIDGMNMIAEYKAQRKKNDDQGQLPE 207
QPT+ DG+ + + K+ D+ LPE
Sbjct: 179 QPTIRKDGLRLWGSW----KRGKDESDLPE 204
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 169 bits (428), Expect = 1e-41, Method: Composition-based stats.
Identities = 92/207 (44%), Positives = 127/207 (61%), Gaps = 15/207 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECP 77
VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C TC+ N+ +CP
Sbjct: 18 VQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVIDRRGRCMTCAGNLTDCP 77
Query: 78 GHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--HPKSRLE 135
GHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + + LK +PK RL
Sbjct: 78 GHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTSGNPKKRLA 137
Query: 136 QILCACKTKNKCEGGDEIDVLSLLGHDGEEPL---RKRKSGCGALQPTLTIDGMNMIAEY 192
I CK+K+ CEG E + L D ++P+ +K +GCG QP+ G+++ AE+
Sbjct: 138 LIYDLCKSKSVCEGAAEKE--DGLPDDMDDPMNEGKKVPAGCGRYQPSYRRVGIDINAEW 195
Query: 193 KAQRKKNDDQGQLPEPVERKQTLTAER 219
K + N+D ERK LTAER
Sbjct: 196 K--KNVNEDTQ------ERKIMLTAER 214
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 161 bits (408), Expect = 3e-39, Method: Composition-based stats.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 21/219 (9%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCE 67
+P ++ V VQF IL P+EI++MSV ++ + E G P GGL D R G ID+R +C
Sbjct: 10 APLRI--VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 68 TCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKI 127
TC+ N+ +CPGHFGHLELAKP+FHIGF+ L I+RCVCF C ++L D+ + LK
Sbjct: 68 TCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKK 127
Query: 128 --RHPKSRLEQILCACKTKNKCEGGDEID-----VLSLLGHDGEEPLRKRKSGCGALQPT 180
+ K RL I CK K+ CEG E + +DG +K GCG QP+
Sbjct: 128 TGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDG----KKVAGGCGRYQPS 183
Query: 181 LTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
G+++ AE+K + N+D ERK LTAER
Sbjct: 184 YRRVGIDINAEWK--KNVNEDTQ------ERKIMLTAER 214
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 157 bits (397), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 127/216 (58%), Gaps = 16/216 (7%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDK 62
F +S + ++ VQF + SP+E+R +SV +I+ +T + A GGL+D RLG+ID+
Sbjct: 4 FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63
Query: 63 RFKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFK 122
FKC+TC M +CPGHFGH+ELAKP+FHIGF+ + + CVC +C K+L DE ++ +
Sbjct: 64 NFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123
Query: 123 LALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLT 182
A+KI+ PK R + CK K C+ + + + + + GCG QP++
Sbjct: 124 QAIKIKDPKRRFNAVWSLCKAKMVCD--------TEVPSEDDPSKYISRGGCGNAQPSIR 175
Query: 183 IDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
DG++++ +K + KN + PE K+ ++AE
Sbjct: 176 KDGLSLVGTWK--KDKNAEDADQPE----KRIISAE 205
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMA--GGLSDLRLGTIDKRF 64
+S + V+ VQF + SP+E+R +SV +I +T + A GGL+D RLG+ID+
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + CVC +C K+L DE ++ + A
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTID 184
L I+ K R I CKTK C E DV S D L R GCG QPT+ D
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVC----ETDVPS---EDDPTQLVSR-GGCGNTQPTIRKD 177
Query: 185 GMNMIAEYKAQRKKND 200
G+ ++ +K R D
Sbjct: 178 GLKLVGSWKKDRATGD 193
>sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II subunit RPB1 (Fragment) OS=Euplotes
octocarinatus GN=RPB1 PE=3 SV=1
Length = 478
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 107/169 (63%), Gaps = 1/169 (0%)
Query: 5 FTFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRF 64
+T S KVR +QF +L P EI+ MSV ++++ K + G+P GG++DLR+GT++K
Sbjct: 7 YTESTMDFQKVRKIQFGLLDPKEIQAMSVVQVENEKIYDNGIPTDGGINDLRMGTMEKAM 66
Query: 65 KCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLA 124
+C TC + ECPGHFGH+ELA+P+FHIGF+ + I++CVCFNC+K+L ++ DK+
Sbjct: 67 RCSTCQGDSKECPGHFGHIELAQPVFHIGFIDLVKKILKCVCFNCNKLLITDKHDKYSAL 126
Query: 125 LKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSG 173
+++ PK +L ++ CK C D G ++P R RK+G
Sbjct: 127 KRVKDPKLKLNKVYKVCKDIKVCGKADRKSETYTEGSGQKQP-RLRKTG 174
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 135 bits (339), Expect = 2e-31, Method: Composition-based stats.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 35/239 (14%)
Query: 7 FSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKC 66
+S ++ +V+ ++ +L P+ I+K+SV EI + + G P GGL+D+R+GTID R C
Sbjct: 9 YSACELKRVKRLELGVLDPEIIKKISVCEIVNVDIYKDGFPREGGLNDIRMGTIDYRTLC 68
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
TC+ N+ CPGHFGH+ELAKPM+H GFM +L ++RCVC++C ++L + K K K
Sbjct: 69 GTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNVNSSKVKYIEK 128
Query: 127 IRHPKSRLEQI--LC----ACKTKNKCEGGDEIDV---------LSLLGHDGE------- 164
I+ RL ++ LC AC + EG + D LS L + +
Sbjct: 129 IKVNSLRLRKLAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQMLLNKSN 188
Query: 165 -----EPLRKRKSGCGALQPTLTIDGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAE 218
E + K CG +QP + +G NM ++ +++ D E K+ L+AE
Sbjct: 189 YTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEEDID--------ESKRKLSAE 239
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 26/182 (14%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+++ +QF + SPDE+R SV I H + E G+P GGL DLR+GT D+ + C++C +
Sbjct: 9 QIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGDN 68
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHPKSR 133
CPGHFGH+EL KPMFH+G++ + ++ CVCF CSKI + + KS
Sbjct: 69 FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-----------KIPRKGIKST 117
Query: 134 LEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIAEYK 193
L + K ++ CEG E L +SGCG QP + +G+ ++A K
Sbjct: 118 LSNVWGMSKGRSVCEG---------------EVLDNGRSGCGNKQPVIKREGLTLVAFMK 162
Query: 194 AQ 195
+
Sbjct: 163 GE 164
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 117 bits (292), Expect = 7e-26, Method: Composition-based stats.
Identities = 60/123 (48%), Positives = 76/123 (61%), Gaps = 6/123 (4%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ILSP EIRKMS EI T E G P+ GGL D RLG ID +CETC + GEC
Sbjct: 11 IDFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDD----KFKLALKIRHPK 131
PGHFGH+ELA+P+ H+GF KT+ ++ C C +I L DEE + KF++ + K
Sbjct: 71 PGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHKFEVTGNRKKAK 130
Query: 132 SRL 134
RL
Sbjct: 131 DRL 133
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 112 bits (280), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSPD IR+MSV +I T E G P+ GGL D RLG ID C+TC +GEC
Sbjct: 13 IMFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGGRIGEC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
PGHFGH+ELAKP+ HIGF KT+ I++ VC +C ++ E K
Sbjct: 73 PGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRK 116
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 110 bits (275), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 7/138 (5%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
+R V+F +LSP+EIR+MSVT I + E G P+ GG+ D +LG I+ KC C + +
Sbjct: 6 IRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED-DKFKL---ALKIRH 129
CPGHFGH+EL KP+ HIG++K + +R C+ C +I E+D +++K A+K+R
Sbjct: 66 AGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKLRW 125
Query: 130 PKS--RLEQILCACKTKN 145
P + RL + + KN
Sbjct: 126 PSAARRLVEYIKKISIKN 143
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 107 bits (268), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/108 (44%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ K+ + F ++SP++IRKMSVT+I T E G P+ GL D RLG ID +C TC
Sbjct: 5 LKKISQINFGLMSPEDIRKMSVTQIVTPDTYDEDGYPIENGLMDPRLGVIDPSLRCRTCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ GECPGHFG + LA+P+ H+GF T+ I+R C C ++L E +
Sbjct: 65 AKGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETE 112
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 105 bits (263), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNM 73
++ ++F ILSPDEIRKMSVT I E G P+ G + D RLG I+ KC TC + +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 GECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKL---ALKIRH 129
G CPGHFGH+EL +P+ H+G +K + ++ C C ++ ++++E +K+ A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PKS 132
P +
Sbjct: 126 PSA 128
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F +LSP++IR MSV +I T + G P+ GGL D RLG ID C++CS +G C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE 116
PGHFGH+EL+K + HIGF K + +++ VC +C K+ E
Sbjct: 73 PGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTE 112
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 99.0 bits (245), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+ K+ + F ++SP++IRKMSV +I T E G P+ L D RLG I +C +C
Sbjct: 5 LKKISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGSSLRCRSCG 64
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED 118
+ GECPGHFG + LA+P+ H+GF T+ I+ +C CS+IL E +
Sbjct: 65 AKGGECPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRILLTETE 112
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 99.0 bits (245), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ ++F++LSPDEIRK+S ++ T + G P+ GL DL +G I+ +C TC
Sbjct: 7 RISSIKFALLSPDEIRKLSQVKVITADTYDDDGYPIEHGLMDLHMGVIEPGLRCATCGGK 66
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEE 117
+ ECPGHFGH+ELA P+ H+GF+K + + C +C +I L D+E
Sbjct: 67 VDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCRSCGRIKLTDDE 112
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 94.4 bits (233), Expect = 5e-19, Method: Composition-based stats.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R MS T++ T + G P+ GL D RLG ID +C+TC G C
Sbjct: 13 ISFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGQRSGGC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC-SKILADEEDDKFKLAL-KIRHPKSRL 134
GHFGH+ELA P+ H+GF K + ++R C C S +L +EE D+++ L + R + +
Sbjct: 73 NGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENLDRTRSLRQDV 132
Query: 135 EQILCA----CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
++ A + K+ C E+ + ++ + +Q L D IA
Sbjct: 133 SDVMTAAIREARKKDHCPHCGEVQY---------DVKHEKPTTYYEVQQVLASDYSERIA 183
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ DD G P+ + + + R
Sbjct: 184 ASMQPDEDEDDAGVSPQELAEQTDIDISR 212
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 94.4 bits (233), Expect = 5e-19, Method: Composition-based stats.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKT-TERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGEC 76
+ F ++ P+E R MS T++ T + G P+ GL D RLG ID +C+TC G C
Sbjct: 13 ISFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTCGQRSGGC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC-SKILADEEDDKFKLAL-KIRHPKSRL 134
GHFGH+ELA P+ H+GF K + ++R C C S +L +EE D+++ L + R + +
Sbjct: 73 NGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENLDRTRSLRQDV 132
Query: 135 EQILCA----CKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDGMNMIA 190
++ A + K+ C E+ + ++ + +Q L D IA
Sbjct: 133 SDVMTAAIREARKKDHCPHCGEVQY---------DVKHEKPTTYYEVQQVLASDYSERIA 183
Query: 191 EYKAQRKKNDDQGQLPEPVERKQTLTAER 219
+ DD G P+ + + + R
Sbjct: 184 ASMQPDEDEDDAGVSPQELAEQTDIDISR 212
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 94.4 bits (233), Expect = 5e-19, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 12 VAKVRMVQFSILSPDEIRKMSVTEIDHGKT------TERGMPMAGGLSDLRLGTIDKRFK 65
+ V ++F I S + I + S +G T + P+ GG+ D RLG + +
Sbjct: 15 IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C TC CPGHFGH++ +P+FH+G++ L I+ C+C C+K+L + + + +
Sbjct: 75 CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALI 134
Query: 126 KIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTIDG 185
K + K R +I CK C+ K GCG ++ID
Sbjct: 135 KNKQGKQRFAEIRSICKKVTHCQ--------------------KENYGCGTPAHKISID- 173
Query: 186 MNMIAEYKAQRKKNDDQGQLPEPVER 211
K+N + L EPV+R
Sbjct: 174 -----------KRNGNIFLLAEPVKR 188
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium
falciparum PE=3 SV=1
Length = 2339
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 8/142 (5%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKT--TERGMPMAGGLSDLRLGTIDKRFKCETCSS 71
+++ ++F I+S ++I K S +I + + G+P G+ DL+LG CETC+
Sbjct: 34 EIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLGAHKSNSVCETCNK 93
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIR--- 128
+ C GHFG++EL P+FHIG+ K ++ I+ C+C CS +L +E F LK +
Sbjct: 94 KLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEKIDFYCNLKKKSTD 153
Query: 129 ---HPKSRLEQILCACKTKNKC 147
+ K ++IL CK NKC
Sbjct: 154 DSFYKKHLFKRILNNCKKVNKC 175
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 87/143 (60%), Gaps = 10/143 (6%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDKRFKCETCSS 71
K+ +QF +LS D+I ++S +I + + + + P G+ D +LGT DK+ C TC
Sbjct: 13 KIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAMCTTCGL 72
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP- 130
++ +C GHFG+++L P+FHIG++K ++ I++ +C +CS IL +EE ++ L K+R+
Sbjct: 73 SIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLR-KMRNKK 131
Query: 131 ------KSRLEQILCACKTKNKC 147
KS L++I C+ +C
Sbjct: 132 MDNLQRKSLLKKIFLECRKTKEC 154
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 90.5 bits (223), Expect = 8e-18, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 10/183 (5%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGT-IDKRFKC 66
S ++ KV VQF I +I+ +V ++H K+ +G S + + + C
Sbjct: 10 SQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSNSAC 69
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
ETC ECPGHFG++ELA+P+F+IG +L +++CVC C +L + + L+
Sbjct: 70 ETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQ 129
Query: 127 IRHPKSRLEQIL----CACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
+RL Q+ C+ E G D D G G P R GCGA QP
Sbjct: 130 HMTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATR--GCGASQP 187
Query: 180 TLT 182
++
Sbjct: 188 RVS 190
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 90.1 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 10/183 (5%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGT-IDKRFKC 66
S ++ KV VQF I +I+ +V ++H K+ +G S + + + C
Sbjct: 10 SQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSNSAC 69
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALK 126
ETC ECPGHFG++ELA+P+F+IG +L +++CVC C +L + + L+
Sbjct: 70 ETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKKLQ 129
Query: 127 IRHPKSRLEQIL----CACKTKNKCE---GGDEIDVLSLLGHDGEEPLRKRKSGCGALQP 179
+RL Q+ C+ E G D D G G P R GCGA QP
Sbjct: 130 HVTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAPFNGGSGMGPGATR--GCGASQP 187
Query: 180 TLT 182
++
Sbjct: 188 RVS 190
>sp|Q196X0|RPB1_IIV3 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-090L PE=3
SV=1
Length = 1377
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 6 TFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFK 65
TF P ++A + + F +LSP+EI KMS ++ K +++G + +GTI+
Sbjct: 2 TFQP-EIADIAKISFGVLSPEEILKMSCCKVTSVKVSDKGENIYSKF----MGTIENGEN 56
Query: 66 CETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLAL 125
C+TC ++ ECPGHFGH L P+ + F+ I+RC+CFNC K + + L
Sbjct: 57 CKTCDRDVWECPGHFGHFHLEVPVVNPIFINDACNILRCICFNCYKFIVSVDH------L 110
Query: 126 KIRHPKSRLEQILCACKTKNKC 147
K+ + R + IL K C
Sbjct: 111 KLENLVRRFQDILLYVKNIKHC 132
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEI---DHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+++ +QF I P+E K E+ D T+R P G DL +GT +K+ C TC
Sbjct: 12 RIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRS-PAEHGALDLHMGTSNKQINCATCG 70
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKF 121
+M +C GHFG+++LA P+FHIG+ K LTI++ +C +CS + L+D+E +F
Sbjct: 71 ESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQF 122
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 11/144 (7%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEI---DHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
+++ ++FS LS +I S E+ D + P A G D ++G +C TC
Sbjct: 12 RIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCH 71
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
N+ C GHFGHL+LA P+FHIG+ K + I++ +C NCS IL E DK + ++R P
Sbjct: 72 GNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSET-DKRQFLHELRRP 130
Query: 131 KSR-------LEQILCACKTKNKC 147
L++IL CK + +C
Sbjct: 131 GVDNLRRMGILKKILDQCKKQRRC 154
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 13/144 (9%)
Query: 15 VRMVQFSILSPDEIRKMSVTEIDHGKTT---ERG-MPMAGGLSDLRLGTIDKRFKCETCS 70
++ ++F LS +I S E+ H + E+G +P GG D ++G +C TC
Sbjct: 13 IKGIEFGALSAKDIIAQSEVEV-HTRDLYDLEKGRIPKDGGALDTKMGISSNANECATCH 71
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
N+ C GHFGH++LA P+FH+G+ K + +++C+C NCS +L DE+ + L +R P
Sbjct: 72 GNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFLN-DLRRP 130
Query: 131 K-------SRLEQILCACKTKNKC 147
L+++L CK + +C
Sbjct: 131 HIDNLRRMKILKKLLEQCKKQRRC 154
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 78.2 bits (191), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 9 PFKVAKVRMVQFSILSPDEIRKMSVTEIDH--GKTTERGMPMAGGLSDLRLGTIDKRFKC 66
P ++ + + +LS +++ ++SV G E G ++D RLG D+ C
Sbjct: 21 PHAPVEISALHYGLLSRNDVHRLSVLPCRRVVGDVKEYG------VNDARLGVCDRLSIC 74
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADE-EDDKFKLAL 125
ETC N EC GH GH++L P+FH+GF T+L I R +C CS +L D+ E D +K L
Sbjct: 75 ETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLLDDTEIDYYKRRL 134
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 9/143 (6%)
Query: 14 KVRMVQFSILSPDEIRK---MSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + V + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
N+ +C GH+G+++L P FH+G+ K ++ I++ +C C +I+ E+ K L R
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQFLDYLKRPG 133
Query: 131 KSRLE------QILCACKTKNKC 147
+ L+ ++ C+ KN C
Sbjct: 134 LTYLQKRGLKKKVSEKCRKKNTC 156
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 14 KVRMVQFSILSPDEIRK---MSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + SP+E+R+ + V + + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I+ +E+ K L R
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPG 133
Query: 131 KSRLE------QILCACKTKNKC 147
+ L+ +I C+ KN C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKNIC 156
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
++ V F + D++RK+SV +I ++ + G P+ GGL D LG +C TCS +
Sbjct: 12 EISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATCSLD 71
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
ECPGHFGH+ELA P ++ +T+ +++ CF+C
Sbjct: 72 FIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHC 108
>sp|P0C988|RPB1_ASFWA Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-109 PE=3 SV=1
Length = 1450
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
A++ VQF+I ++ ++ V E+ E +P GG+ D R+GT D +KC TCS
Sbjct: 6 AEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITCSHQ 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
+C GH G L++ P+ F+ + +R +C NC + D
Sbjct: 66 RKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD 108
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South
Africa/Pretoriuskop Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
A++ VQF+I ++ ++ V E+ E +P GG+ D R+GT D +KC TCS
Sbjct: 6 AEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITCSHQ 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
+C GH G L++ P+ F+ + +R +C NC + D
Sbjct: 66 RKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD 108
>sp|Q65215|RPB1_ASFM2 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-107 PE=3 SV=2
Length = 1450
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
A++ VQF+I ++ ++ V E+ E +P GG+ D R+GT D +KC TCS
Sbjct: 6 AEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITCSHQ 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
+C GH G L++ P+ F+ + +R +C NC + D
Sbjct: 66 RKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD 108
>sp|P0C989|RPB1_ASFK5 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Pig/Kenya/KEN-50/1950)
GN=Ken-111 PE=3 SV=1
Length = 1450
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
A++ VQF+I ++ ++ V E+ E +P GG+ D R+GT D +KC TCS
Sbjct: 6 AEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITCSHQ 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
+C GH G L++ P+ F+ + +R +C NC + D
Sbjct: 66 RKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD 108
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSN 72
A++ VQF+I ++ ++ V E+ E +P GG+ D R+GT D +KC TCS
Sbjct: 6 AEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITCSHQ 65
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILAD 115
+C GH G L++ P+ F+ + +R +C NC + D
Sbjct: 66 RKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD 108
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 14 KVRMVQFSILSPDEIRK---MSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
K+ + F + S +E+R+ + V + P+ G+ D R+GT +K CETC
Sbjct: 14 KISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCG 73
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
N+ +C GH+G+++L P FH+G+ + ++ I++ +C C I+ +E+ K L R
Sbjct: 74 KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPG 133
Query: 131 KSRLE------QILCACKTKNKC 147
+ L+ +I C+ KN C
Sbjct: 134 LTYLQKRGLKKKISDKCRKKNTC 156
>sp|O55766|RPB1_IIV6 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-176R PE=3
SV=1
Length = 1026
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 11 KVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCS 70
++ ++ + F ++S ++IR+MS E+ K + + + D + G I CETC
Sbjct: 10 EIKEIESISFGMMSSEDIRQMSSFEVKTAKISSTNL--LETVHDPKSGPIGSA-PCETCH 66
Query: 71 SNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKLALKIRHP 130
N +CPGHFGH+EL P+ H F+ ++ I++ C+ C++ L ++ + LK+
Sbjct: 67 QNEWDCPGHFGHIELNVPIIHPLFINHVVNILKIFCWKCNEFLLTKDHLELNNILKLEKE 126
Query: 131 KSRLEQILCACKTKNKC 147
K + +L K ++C
Sbjct: 127 K-KFNAVLEKIKKCDRC 142
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia
intestinalis GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTERG-MPMAGGLSDLRLGTIDKRFKCETCSSN 72
+V + FS+LS + + K+S +I E P G+ D RLG DK KC TC +
Sbjct: 26 RVEKLVFSVLSSNALMKLSEVQITTPILYEHYPSPATNGVLDKRLGLSDKVGKCATCGKD 85
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEED--------DKFKLA 124
C GHFG + LA P+FH G + T++ VC CS++ E D KF LA
Sbjct: 86 TKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVKISEADRLKYKVLNHKFSLA 145
Query: 125 LKIRHPKSRLEQILC 139
+ + +Q+ C
Sbjct: 146 IVKEAQEQAKKQVNC 160
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 67.4 bits (163), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSS 71
++++ V+F I D++ K+SV +I + + P GGL DL LG K C TC
Sbjct: 9 SEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHL 68
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
+ CPGHFGH+ L P +H F + ++R C C
Sbjct: 69 DERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYC 106
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila
melanogaster GN=RpI1 PE=1 SV=2
Length = 1642
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 18 VQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFK-CETCSSNMGE 75
++F++ + EIRK+SV ++ G T + G + GGL D+R+G+ + C TC + +
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTCLK-LQD 74
Query: 76 CPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKI-LADEEDDKFKLALKI 127
CPGH GH+EL P+++ F+K + ++ C +C K+ + D E + L L++
Sbjct: 75 CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRL 127
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 13 AKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSS 71
+++ V F IL+ EIR +S +I + + G P++GGL DL LG + C TC
Sbjct: 9 SEITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNL-CSTCGL 67
Query: 72 NMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
+ CPGH GH+EL P ++ F L +R C C
Sbjct: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFC 105
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus
GN=Polr1a PE=1 SV=2
Length = 1717
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 8 SPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKC 66
+P++ +++ + F + S +E++K+SV I + + + G P A GL DL LG D + C
Sbjct: 7 TPWR--RLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVC 64
Query: 67 ETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
TC + C GH GH++L +++ L ++R C +C
Sbjct: 65 ATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSC 107
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens
GN=POLR1A PE=1 SV=2
Length = 1720
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 14 KVRMVQFSILSPDEIRKMSVTEIDHGKTTER-GMPMAGGLSDLRLGTIDKRFKCETCSSN 72
+++ + F + S +E++K+SV I + + + G P A GL DL LG D + C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNC 109
C GH GH+EL +++ L ++R C NC
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,861,423
Number of Sequences: 539616
Number of extensions: 3381270
Number of successful extensions: 8210
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 8103
Number of HSP's gapped (non-prelim): 346
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)