RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045123
         (219 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score =  191 bits (486), Expect = 1e-56
 Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 16/216 (7%)

Query: 6   TFSPFKVAKVRMVQFSILSPDEIRKMSVTEIDHGKTTE--RGMPMAGGLSDLRLGTIDKR 63
            +S   +  V+ VQF + SP+E+R +SV +I   +T +  +     GGL+D RLG+ID+ 
Sbjct: 4   QYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRN 63

Query: 64  FKCETCSSNMGECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDKFKL 123
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +  CVC +C K+L DE ++  + 
Sbjct: 64  LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQ 123

Query: 124 ALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLLGHDGEEPLRKRKSGCGALQPTLTI 183
           AL I+  K R   I   CKTK  CE         +   D    L  R  GCG  QPT+  
Sbjct: 124 ALAIKDSKKRFAAIWTLCKTKMVCET-------DVPSEDDPTQLVSRG-GCGNTQPTIRK 175

Query: 184 DGMNMIAEYKAQRKKNDDQGQLPEPVERKQTLTAER 219
           DG+ ++  +K  R   D            + L+ E 
Sbjct: 176 DGLKLVGSWKKDRATGDADE------PELRVLSTEE 205


>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore
           domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia
           coli [TaxId: 562]}
          Length = 97

 Score = 28.3 bits (63), Expect = 0.21
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 157 SLLGHDGEEPLRKRKSGCGALQPTLTID-GMNM-IAEYKAQRKKNDDQGQLPEPVER 211
           ++ G D    +       G +Q TLT + G +  IA+ + Q K       LP+ V++
Sbjct: 31  NMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQ 87


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
           thermophilus [TaxId: 274]}
          Length = 1504

 Score = 29.0 bits (64), Expect = 0.54
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 38/114 (33%)

Query: 14  KVRMVQFSILSPDEIRKMSVTEIDHGKT----TERGMPMAGGLSDLRL-GTI-------- 60
           +VR V+ ++ SP++IR  S  E++  +T    T +  P   GL D R+ G I        
Sbjct: 3   EVRKVRIALASPEKIRSWSYGEVEKPETINYRTLK--PERDGLFDERIFGPIKDYECACG 60

Query: 61  ---DKRFK---CETC-----SSN-----MGECPGHFGHLELAKPMFHIGFMKTL 98
               +RF+   CE C      S      MG       H+ELA P  HI F+K +
Sbjct: 61  KYKRQRFEGKVCERCGVEVTKSIVRRYRMG-------HIELATPAAHIWFVKDV 107


>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
           factor ERF2, G domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 245

 Score = 26.7 bits (58), Expect = 2.0
 Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 2/75 (2%)

Query: 36  IDHGKTT--ERGMPMAGGLSDLRLGTIDKRFKCETCSSNMGECPGHFGHLELAKPMFHIG 93
           +D GK+T     + + G +    +  I++  K     S            E  K      
Sbjct: 33  VDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEV 92

Query: 94  FMKTLLTIMRCVCFN 108
                 T  R     
Sbjct: 93  GRAYFETEHRRFSLL 107


>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
           N-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 422

 Score = 25.7 bits (56), Expect = 5.0
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 15  VRMVQFSILSPDEIRKMSVTEIDHGKTTERGMPMAGGLSDLRLGTIDKRFKCETCSSNMG 74
           +R      +  ++I    +  +       +GM +A  L+      +D+RF+ +    +  
Sbjct: 151 IRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQR 210

Query: 75  ECPGHFGHLELAKPMFHIGFMKTLLTIMRCVCFNCSKILADEEDDK 120
                F    LA+P   +     + T+      N + + A E   +
Sbjct: 211 YSTNTFPTWPLAQPFRMLAHNGEINTVKG----NVNWMKAHETRME 252


>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 23.9 bits (52), Expect = 9.1
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 113 LADEEDDKFKLALKIRHPKSRLEQILCACKTKNKCEGGDEIDVLSLL 159
           L  EE  KFKL L     +    +I      +      D +D+   L
Sbjct: 15  LTAEELKKFKLKLLSVPLREGYGRI-----PRGALLSMDALDLTDKL 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 830,616
Number of extensions: 38417
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 20
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)