Query 045124
Match_columns 390
No_of_seqs 147 out of 1592
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 6.5E-19 1.4E-23 154.0 -5.3 270 9-317 98-374 (419)
2 KOG4341 F-box protein containi 99.5 3E-15 6.4E-20 136.9 -2.1 323 7-379 69-433 (483)
3 PF08387 FBD: FBD; InterPro: 99.4 5.2E-13 1.1E-17 88.2 4.7 50 331-380 1-50 (51)
4 PF12937 F-box-like: F-box-lik 98.7 8.9E-09 1.9E-13 67.0 3.2 35 9-43 1-35 (47)
5 smart00579 FBD domain in FBox 98.7 2.9E-08 6.3E-13 71.1 4.8 46 340-385 1-46 (72)
6 PF00646 F-box: F-box domain; 98.3 2.1E-07 4.6E-12 60.8 1.1 38 9-46 3-40 (48)
7 PLN00113 leucine-rich repeat r 98.2 1.4E-06 3E-11 94.0 5.7 149 114-278 93-246 (968)
8 smart00256 FBOX A Receptor for 98.2 1.5E-06 3.3E-11 54.5 3.6 34 12-45 1-34 (41)
9 PLN00113 leucine-rich repeat r 98.0 4.3E-06 9.2E-11 90.3 4.8 175 134-318 396-583 (968)
10 cd00116 LRR_RI Leucine-rich re 97.9 3.7E-07 8.1E-12 85.3 -4.6 111 247-380 193-315 (319)
11 PF14580 LRR_9: Leucine-rich r 97.9 1.6E-06 3.5E-11 73.0 -1.5 103 115-233 20-126 (175)
12 KOG1909 Ran GTPase-activating 97.9 2.5E-06 5.4E-11 77.4 -0.7 109 74-204 20-132 (382)
13 KOG2120 SCF ubiquitin ligase, 97.8 1.5E-06 3.2E-11 77.3 -2.6 92 111-204 231-325 (419)
14 PLN03210 Resistant to P. syrin 97.8 3.4E-05 7.4E-10 84.3 7.0 95 216-317 778-880 (1153)
15 KOG3207 Beta-tubulin folding c 97.8 2.4E-06 5.2E-11 79.7 -2.0 157 141-318 171-338 (505)
16 PF07723 LRR_2: Leucine Rich R 97.7 5.3E-05 1.1E-09 42.0 2.8 26 167-192 1-26 (26)
17 cd00116 LRR_RI Leucine-rich re 97.6 4E-06 8.7E-11 78.3 -3.2 187 165-382 80-288 (319)
18 PLN03210 Resistant to P. syrin 97.6 6E-05 1.3E-09 82.5 5.1 103 114-231 611-715 (1153)
19 KOG4194 Membrane glycoprotein 97.6 5.5E-05 1.2E-09 73.3 3.8 81 141-223 196-276 (873)
20 PF13855 LRR_8: Leucine rich r 97.6 3.7E-05 7.9E-10 52.9 1.7 60 142-203 1-60 (61)
21 PF14580 LRR_9: Leucine-rich r 97.4 8.6E-06 1.9E-10 68.6 -3.3 78 140-223 17-95 (175)
22 KOG3207 Beta-tubulin folding c 97.3 1.7E-05 3.7E-10 74.1 -2.9 133 141-279 120-257 (505)
23 KOG3665 ZYG-1-like serine/thre 97.3 6.3E-05 1.4E-09 77.0 -0.1 153 142-316 122-285 (699)
24 KOG1909 Ran GTPase-activating 97.2 0.00033 7.1E-09 63.9 3.7 167 49-233 33-226 (382)
25 KOG4194 Membrane glycoprotein 97.0 0.00014 3.1E-09 70.6 -0.9 42 137-178 288-329 (873)
26 KOG2982 Uncharacterized conser 96.9 0.00015 3.2E-09 64.8 -1.5 219 113-369 70-307 (418)
27 KOG4341 F-box protein containi 96.8 0.00023 5E-09 66.4 -0.8 160 139-316 291-462 (483)
28 PF13855 LRR_8: Leucine rich r 96.5 0.0019 4.1E-08 44.2 2.4 58 115-177 2-60 (61)
29 KOG1947 Leucine rich repeat pr 96.4 0.00014 3E-09 71.9 -5.4 113 137-255 209-329 (482)
30 KOG0617 Ras suppressor protein 96.4 9.8E-05 2.1E-09 60.8 -5.4 68 132-203 46-113 (264)
31 PRK15370 E3 ubiquitin-protein 96.3 0.0068 1.5E-07 62.9 5.7 76 114-204 178-253 (754)
32 KOG2982 Uncharacterized conser 96.3 0.0011 2.5E-08 59.3 0.1 164 137-319 40-212 (418)
33 KOG1947 Leucine rich repeat pr 96.1 0.00049 1.1E-08 68.0 -3.2 135 164-316 186-331 (482)
34 KOG0444 Cytoskeletal regulator 96.1 5.9E-05 1.3E-09 73.7 -9.6 176 131-317 162-350 (1255)
35 KOG0618 Serine/threonine phosp 96.1 0.00066 1.4E-08 69.4 -2.7 106 141-258 382-487 (1081)
36 KOG1644 U2-associated snRNP A' 95.9 0.013 2.9E-07 49.8 4.6 63 141-204 63-125 (233)
37 PRK15387 E3 ubiquitin-protein 95.8 0.02 4.4E-07 59.4 6.8 74 114-204 201-274 (788)
38 KOG2739 Leucine-rich acidic nu 95.8 0.0011 2.3E-08 58.4 -2.1 133 115-257 19-153 (260)
39 PRK15370 E3 ubiquitin-protein 95.7 0.0061 1.3E-07 63.3 2.6 177 114-318 241-427 (754)
40 PLN03150 hypothetical protein; 95.4 0.011 2.5E-07 60.5 3.3 83 143-232 419-502 (623)
41 KOG0444 Cytoskeletal regulator 95.4 0.0011 2.4E-08 65.2 -3.8 164 130-319 91-258 (1255)
42 PF12799 LRR_4: Leucine Rich r 95.4 0.0091 2E-07 37.8 1.6 36 166-204 1-36 (44)
43 KOG1644 U2-associated snRNP A' 95.1 0.039 8.5E-07 47.0 4.8 79 143-232 43-125 (233)
44 KOG0617 Ras suppressor protein 95.0 0.002 4.3E-08 53.2 -3.0 85 114-205 56-140 (264)
45 PF12799 LRR_4: Leucine Rich r 94.9 0.011 2.3E-07 37.5 0.9 38 142-180 1-38 (44)
46 KOG1259 Nischarin, modulator o 94.6 0.0023 4.9E-08 57.5 -4.0 18 302-319 395-412 (490)
47 PRK15387 E3 ubiquitin-protein 94.3 0.081 1.8E-06 55.1 6.0 53 114-178 222-274 (788)
48 KOG0281 Beta-TrCP (transducin 94.2 0.028 6.2E-07 51.2 2.1 37 6-42 72-112 (499)
49 PRK15386 type III secretion pr 93.1 0.17 3.7E-06 48.5 5.4 131 114-276 52-185 (426)
50 KOG2997 F-box protein FBX9 [Ge 93.0 0.08 1.7E-06 48.0 2.8 35 8-42 106-145 (366)
51 COG4886 Leucine-rich repeat (L 92.2 0.033 7.2E-07 53.7 -0.6 101 142-257 116-219 (394)
52 KOG3665 ZYG-1-like serine/thre 91.8 0.042 9E-07 56.7 -0.5 136 165-318 121-262 (699)
53 PLN03150 hypothetical protein; 91.1 0.21 4.5E-06 51.3 3.7 83 116-204 420-502 (623)
54 KOG1859 Leucine-rich repeat pr 91.0 0.11 2.3E-06 52.6 1.5 66 85-154 54-121 (1096)
55 KOG0472 Leucine-rich repeat pr 91.0 0.018 3.9E-07 53.9 -3.6 173 114-319 362-541 (565)
56 PLN03215 ascorbic acid mannose 90.6 0.2 4.4E-06 47.3 2.9 36 9-44 4-40 (373)
57 COG4886 Leucine-rich repeat (L 90.4 0.11 2.3E-06 50.1 0.9 98 115-223 117-216 (394)
58 KOG2123 Uncharacterized conser 89.9 0.011 2.4E-07 52.7 -5.7 103 165-313 18-124 (388)
59 KOG0618 Serine/threonine phosp 89.8 0.085 1.8E-06 54.6 -0.4 70 131-204 419-488 (1081)
60 KOG0274 Cdc4 and related F-box 89.4 0.19 4E-06 50.4 1.7 41 2-42 101-141 (537)
61 KOG2739 Leucine-rich acidic nu 89.1 0.072 1.6E-06 47.1 -1.3 71 182-259 33-103 (260)
62 KOG1259 Nischarin, modulator o 88.5 0.75 1.6E-05 41.8 4.6 127 141-278 181-339 (490)
63 KOG0472 Leucine-rich repeat pr 86.7 0.057 1.2E-06 50.8 -3.5 22 359-380 515-536 (565)
64 COG5238 RNA1 Ran GTPase-activa 86.7 0.53 1.1E-05 42.2 2.6 41 164-204 90-132 (388)
65 KOG4658 Apoptotic ATPase [Sign 86.4 0.19 4.1E-06 53.4 -0.4 83 114-203 571-653 (889)
66 PF13013 F-box-like_2: F-box-l 84.3 1 2.2E-05 34.7 2.8 30 8-37 21-50 (109)
67 KOG4658 Apoptotic ATPase [Sign 81.5 0.61 1.3E-05 49.7 0.9 87 132-223 560-649 (889)
68 smart00367 LRR_CC Leucine-rich 80.9 0.6 1.3E-05 25.5 0.3 11 166-176 2-12 (26)
69 KOG4579 Leucine-rich repeat (L 78.3 0.36 7.9E-06 38.8 -1.5 60 142-204 53-112 (177)
70 KOG0531 Protein phosphatase 1, 78.2 0.28 6E-06 47.8 -2.8 104 138-257 91-196 (414)
71 PF13504 LRR_7: Leucine rich r 77.7 1.4 3.1E-05 21.4 1.1 12 143-154 2-13 (17)
72 KOG3864 Uncharacterized conser 77.6 0.93 2E-05 38.8 0.6 91 131-223 90-183 (221)
73 KOG2123 Uncharacterized conser 77.6 0.32 6.9E-06 43.7 -2.2 59 142-203 41-99 (388)
74 PRK15386 type III secretion pr 76.7 4 8.7E-05 39.4 4.7 49 113-174 71-120 (426)
75 KOG4237 Extracellular matrix p 76.3 1.3 2.7E-05 42.0 1.1 21 361-381 477-497 (498)
76 KOG0531 Protein phosphatase 1, 73.4 1.5 3.3E-05 42.6 1.0 79 138-223 114-193 (414)
77 PF00560 LRR_1: Leucine Rich R 67.9 3.4 7.4E-05 21.5 1.2 16 143-158 1-16 (22)
78 PF13516 LRR_6: Leucine Rich r 66.8 1.7 3.7E-05 23.1 -0.2 14 166-179 2-15 (24)
79 KOG4237 Extracellular matrix p 65.5 1.9 4E-05 40.9 -0.2 35 141-175 90-124 (498)
80 KOG0532 Leucine-rich repeat (L 63.2 0.37 7.9E-06 47.6 -5.4 129 134-277 113-243 (722)
81 PF09372 PRANC: PRANC domain; 58.2 8.3 0.00018 28.9 2.2 25 7-31 70-94 (97)
82 KOG1859 Leucine-rich repeat pr 54.4 3.3 7.1E-05 42.5 -0.7 63 137-204 204-266 (1096)
83 KOG4579 Leucine-rich repeat (L 52.3 0.27 5.8E-06 39.5 -6.9 98 144-255 29-128 (177)
84 KOG3864 Uncharacterized conser 51.8 4.4 9.4E-05 34.9 -0.3 66 138-204 121-188 (221)
85 PF13306 LRR_5: Leucine rich r 43.2 20 0.00043 27.9 2.3 59 139-201 9-67 (129)
86 COG4829 CatC1 Muconolactone de 38.9 13 0.00027 27.0 0.5 35 12-46 11-47 (98)
87 COG5238 RNA1 Ran GTPase-activa 37.3 56 0.0012 29.8 4.3 47 107-153 84-131 (388)
88 KOG4408 Putative Mg2+ and Co2+ 30.5 11 0.00024 34.8 -1.1 38 9-46 8-45 (386)
89 KOG3763 mRNA export factor TAP 30.5 62 0.0013 32.4 3.8 17 296-312 291-307 (585)
90 smart00368 LRR_RI Leucine rich 30.0 23 0.00049 19.6 0.5 15 166-180 2-16 (28)
91 PF01827 FTH: FTH domain; Int 29.7 1.6E+02 0.0034 23.2 5.7 118 71-199 2-124 (142)
92 smart00369 LRR_TYP Leucine-ric 27.8 40 0.00087 17.9 1.2 17 142-158 2-18 (26)
93 smart00370 LRR Leucine-rich re 27.8 40 0.00087 17.9 1.2 17 142-158 2-18 (26)
94 KOG3926 F-box proteins [Amino 24.7 71 0.0015 28.8 2.8 49 7-58 200-256 (332)
95 KOG0532 Leucine-rich repeat (L 23.0 16 0.00034 36.7 -1.7 69 131-204 155-223 (722)
96 KOG3763 mRNA export factor TAP 22.6 20 0.00043 35.7 -1.0 69 161-234 213-284 (585)
97 PF03448 MgtE_N: MgtE intracel 20.8 1.3E+02 0.0029 22.2 3.4 27 6-32 43-69 (102)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.5e-19 Score=154.04 Aligned_cols=270 Identities=19% Similarity=0.205 Sum_probs=173.9
Q ss_pred CCCCChHHHHHHHccCChHHHHHHHHhhhchHHhhccc-ccceEEEeeCCCCCCCCCCccchhHHHHHHHHHhcccCCCc
Q 045124 9 FYGLPDDILRHIIACLPTKNAVGTSLISRQWIDLWTEV-EFHQLALDDSDLLEPDLSPDTIAWSFQEFVSDILDRVNLLV 87 (390)
Q Consensus 9 is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 87 (390)
+..|||||+..|||.|+.+|+.+.+.|||||.++-... -|..+++.+....+ +...+++.+ |
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-------------~~l~~l~~r--g-- 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP-------------DVLGRLLSR--G-- 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh-------------hHHHHHHhC--C--
Confidence 57899999999999999999999999999998764332 12234544444432 223333222 2
Q ss_pred eeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCc
Q 045124 88 IRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPS 167 (390)
Q Consensus 88 l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~ 167 (390)
|..|++.-.....+..+.-. ...+..++.++|+... -..-.+-..+..|.+|+.|.|.|..+.+.--...+--.+
T Consensus 161 V~v~Rlar~~~~~prlae~~--~~frsRlq~lDLS~s~---it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~ 235 (419)
T KOG2120|consen 161 VIVFRLARSFMDQPRLAEHF--SPFRSRLQHLDLSNSV---ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN 235 (419)
T ss_pred eEEEEcchhhhcCchhhhhh--hhhhhhhHHhhcchhh---eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc
Confidence 55555542221222122111 1234568888887651 122333444567999999999998765421112334578
Q ss_pred ccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEE--EccceeEEEeeeeeccCCCCCCCCCcceEEEe
Q 045124 168 LRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDV--VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEIN 245 (390)
Q Consensus 168 Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i--~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ 245 (390)
|+.|+|+.+..-+..++.-++++|..|.+|+|.+|....-..+..| .+++|+.|+++|+..+-.. .....+.-.
T Consensus 236 L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~----sh~~tL~~r 311 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK----SHLSTLVRR 311 (419)
T ss_pred ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh----hHHHHHHHh
Confidence 9999999998776688999999999999999999986211111222 4689999999664432222 122445668
Q ss_pred cCccceEEeeecc----cceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccc
Q 045124 246 TQNLVCLELRENF----FAQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCT 317 (390)
Q Consensus 246 ap~L~~L~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~ 317 (390)
+|+|..|+++++. .+...+-.++.|++++++-|+.+. ....--++..|.|..|.+.++-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-------------p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-------------PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-------------hHHeeeeccCcceEEEEecccc
Confidence 9999999999853 233456678888988888776442 1122225567777777777763
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.47 E-value=3e-15 Score=136.87 Aligned_cols=323 Identities=17% Similarity=0.146 Sum_probs=189.7
Q ss_pred CcCCC-CChHHHHHHHccCChHHHHHHHHhhhchHHhhccc-ccceEEEeeCCCCCCCCCCccchhHHHHHHHHHhcccC
Q 045124 7 NFFYG-LPDDILRHIIACLPTKNAVGTSLISRQWIDLWTEV-EFHQLALDDSDLLEPDLSPDTIAWSFQEFVSDILDRVN 84 (390)
Q Consensus 7 D~is~-LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 84 (390)
+-++. ||.|++..|||+|.++...|++.+|+-|..+-... .|.++++.+..... ...|-..+..+.
T Consensus 69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv------------~g~VV~~~~~Rc 136 (483)
T KOG4341|consen 69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV------------DGGVVENMISRC 136 (483)
T ss_pred ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC------------CCcceehHhhhh
Confidence 34554 99999999999999999999999999998763222 11122222221110 022333344556
Q ss_pred CCceeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCCCC----c-cCCcccEEEEcCeeec-CCC
Q 045124 85 LLVIRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPSNL----C-TSTALEVLKLQGNITL-DPD 158 (390)
Q Consensus 85 ~~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l----~-~c~~L~~L~L~~~~~~-~~~ 158 (390)
|..++.++++-........+..... ..++++.|.+..+ + .+.... . .|++|++|.|.+|... +..
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~--~CpnIehL~l~gc-~------~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFAS--NCPNIEHLALYGC-K------KITDSSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred ccccccccccccccCCcchhhHHhh--hCCchhhhhhhcc-e------eccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 6668899988877655444433332 3578888877554 2 222211 1 2889999999887532 111
Q ss_pred C-CCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCe--eEEEEcc-------------------
Q 045124 159 P-DQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPF--QFDVVST------------------- 216 (390)
Q Consensus 159 ~-~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~--~l~i~~~------------------- 216 (390)
- ....+|++|+.|+++++.-.....++.+..+|..|+++.+++|....++. .+.-..+
T Consensus 208 Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 0 13457999999999998766557788888999999999888886532211 0001222
Q ss_pred -------ceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc-----ceeeeccCCcceeEEeeeeeeeecC
Q 045124 217 -------SVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF-----AQYILRNLNLLEKADIGIGGVFMCP 284 (390)
Q Consensus 217 -------~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~ 284 (390)
.|+.|.. .+|..... .....+..++++|+.|.+.++.. ....-.+.++|+.+++..+..+.
T Consensus 288 ~i~~~c~~lq~l~~----s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~-- 360 (483)
T KOG4341|consen 288 LIACGCHALQVLCY----SSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT-- 360 (483)
T ss_pred HHhhhhhHhhhhcc----cCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh--
Confidence 3344444 33333221 22223444566666666666431 11122356666666665443222
Q ss_pred CCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCccchhhcccceEEEEecCCchhHHHHH
Q 045124 285 RGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGISVRGFGGKLHELQVI 364 (390)
Q Consensus 285 ~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~~~~g~~~e~~~~ 364 (390)
...+..+-.+||.|++|.++-+..--+.+ ........|...+|.++++.+...... +..
T Consensus 361 ----------d~tL~sls~~C~~lr~lslshce~itD~g---------i~~l~~~~c~~~~l~~lEL~n~p~i~d--~~L 419 (483)
T KOG4341|consen 361 ----------DGTLASLSRNCPRLRVLSLSHCELITDEG---------IRHLSSSSCSLEGLEVLELDNCPLITD--ATL 419 (483)
T ss_pred ----------hhhHhhhccCCchhccCChhhhhhhhhhh---------hhhhhhccccccccceeeecCCCCchH--HHH
Confidence 24688899999999999999664322111 112233456667777777776655422 223
Q ss_pred HHHHhcccccceEEE
Q 045124 365 EYLLKNARVLRRMDI 379 (390)
Q Consensus 365 ~~ll~~a~~Le~l~i 379 (390)
++ +.+.++||++.+
T Consensus 420 e~-l~~c~~Leri~l 433 (483)
T KOG4341|consen 420 EH-LSICRNLERIEL 433 (483)
T ss_pred HH-HhhCcccceeee
Confidence 33 366777887554
No 3
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.38 E-value=5.2e-13 Score=88.21 Aligned_cols=50 Identities=36% Similarity=0.694 Sum_probs=47.9
Q ss_pred ccccCCCccchhhcccceEEEEecCCchhHHHHHHHHHhcccccceEEEE
Q 045124 331 RWEERDVPADCLRNCLRGISVRGFGGKLHELQVIEYLLKNARVLRRMDIY 380 (390)
Q Consensus 331 ~w~~~~~~~~c~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~ 380 (390)
+|+++..+|+|+.+|||.|++.||.|..+|++|++|+++||++||+|+|.
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 58888899999999999999999999999999999999999999999996
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.73 E-value=8.9e-09 Score=67.01 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHccCChHHHHHHHHhhhchHHhh
Q 045124 9 FYGLPDDILRHIIACLPTKNAVGTSLISRQWIDLW 43 (390)
Q Consensus 9 is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw 43 (390)
|+.||+||+.+||++|+.+|.++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999865
No 5
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=98.67 E-value=2.9e-08 Score=71.07 Aligned_cols=46 Identities=26% Similarity=0.631 Sum_probs=42.5
Q ss_pred chhhcccceEEEEecCCchhHHHHHHHHHhcccccceEEEEEecCC
Q 045124 340 DCLRNCLRGISVRGFGGKLHELQVIEYLLKNARVLRRMDIYASAEG 385 (390)
Q Consensus 340 ~c~~~~Lk~v~i~~~~g~~~e~~~~~~ll~~a~~Le~l~i~~~~~~ 385 (390)
+|+.++|++|+|.||.|..+|++|++|+++||+.||+|+|..+...
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~ 46 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSD 46 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCC
Confidence 4778899999999999999999999999999999999999987653
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.30 E-value=2.1e-07 Score=60.79 Aligned_cols=38 Identities=34% Similarity=0.627 Sum_probs=32.1
Q ss_pred CCCCChHHHHHHHccCChHHHHHHHHhhhchHHhhccc
Q 045124 9 FYGLPDDILRHIIACLPTKNAVGTSLISRQWIDLWTEV 46 (390)
Q Consensus 9 is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~~~ 46 (390)
+++||+|++.+|+++|+.+|.++.+.+||+|+.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 56899999999999999999999999999999987654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.22 E-value=1.4e-06 Score=93.97 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=93.3
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
..++.|+|..+ .-...+|..++ .+++|++|+|++|.+.... ....+++|++|+|+++.+.. .+...+..++
T Consensus 93 ~~L~~L~Ls~n----~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~ 164 (968)
T PLN00113 93 PYIQTINLSNN----QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI--PRGSIPNLETLDLSNNMLSG--EIPNDIGSFS 164 (968)
T ss_pred CCCCEEECCCC----ccCCcCChHHhccCCCCCEEECcCCcccccc--CccccCCCCEEECcCCcccc--cCChHHhcCC
Confidence 57888888654 22336777766 7888999999888764332 23568888888888887753 3445567788
Q ss_pred ccceEEEeceecCC-CCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc---ceeeeccCC
Q 045124 193 VLDDLYVRGNIAEP-LPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF---AQYILRNLN 268 (390)
Q Consensus 193 ~Le~L~l~~c~~~~-~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~---~~~~~~~~~ 268 (390)
+|+.|+|.+|.... ... .-...++|+.|.+ .+|..... .....-..++|+.|+++++.. .+..+.+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L----~~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTL----ASNQLVGQ---IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred CCCEEECccCcccccCCh-hhhhCcCCCeeec----cCCCCcCc---CChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 88888888886521 111 1114567888888 55554311 011122456777777766432 123456777
Q ss_pred cceeEEeeee
Q 045124 269 LLEKADIGIG 278 (390)
Q Consensus 269 ~L~~l~l~~~ 278 (390)
+|+++++..+
T Consensus 237 ~L~~L~L~~n 246 (968)
T PLN00113 237 SLNHLDLVYN 246 (968)
T ss_pred CCCEEECcCc
Confidence 7887777544
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.22 E-value=1.5e-06 Score=54.45 Aligned_cols=34 Identities=38% Similarity=0.708 Sum_probs=31.9
Q ss_pred CChHHHHHHHccCChHHHHHHHHhhhchHHhhcc
Q 045124 12 LPDDILRHIIACLPTKNAVGTSLISRQWIDLWTE 45 (390)
Q Consensus 12 LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~~ 45 (390)
||+|++.+|+++|+.+|.++.+.+||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987654
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.03 E-value=4.3e-06 Score=90.26 Aligned_cols=175 Identities=18% Similarity=0.092 Sum_probs=85.4
Q ss_pred CCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEE
Q 045124 134 LPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDV 213 (390)
Q Consensus 134 lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i 213 (390)
+|..+..|++|+.|+|.+|.+....+.....+++|+.|+|++..+.+ .+...+..+|.|+.|++.+|.....-. -..
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~~ 472 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG--RINSRKWDMPSLQMLSLARNKFFGGLP-DSF 472 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC--ccChhhccCCCCcEEECcCceeeeecC-ccc
Confidence 34444555666666666665432222234456666666666665542 233334456777777777775421111 112
Q ss_pred EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc---ceeeeccCCcceeEEeeeeeeee-cC-----
Q 045124 214 VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF---AQYILRNLNLLEKADIGIGGVFM-CP----- 284 (390)
Q Consensus 214 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~-~~----- 284 (390)
..++|+.|.+ .+|.+... .....-..++|+.|+++++.. .+..+.++++|+.++++.+.... .+
T Consensus 473 ~~~~L~~L~l----s~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 473 GSKRLENLDL----SRNQFSGA---VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred ccccceEEEC----cCCccCCc---cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 3456777777 55554321 011112455666676666432 12234566666666665433110 00
Q ss_pred --CCCcc--CCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 285 --RGGGF--DFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 285 --~~~~f--~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
....+ ..+.-...+...+..+++|+.|.|+....
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 00000 01111112344456677888888877654
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.95 E-value=3.7e-07 Score=85.30 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=60.0
Q ss_pred CccceEEeeecccc-------eeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhcc----CCCccEEEEec
Q 045124 247 QNLVCLELRENFFA-------QYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPE----VYNVNSLALSG 315 (390)
Q Consensus 247 p~L~~L~~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~----~p~L~~L~l~~ 315 (390)
++|+.|+++++... ...+.++++|+.++++.+.. ....+..+.+. .+.|++|.+.+
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-------------~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-------------TDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC-------------chHHHHHHHHHHhccCCCceEEEccC
Confidence 46666666554211 11244566777777754320 01234444443 47999999988
Q ss_pred ccccccCCCCCCcccccccCCCccchhhcccceEEEEecC-CchhHHHHHHHHHhcccccceEEEE
Q 045124 316 CTVGEAKGEFPDCVQRWEERDVPADCLRNCLRGISVRGFG-GKLHELQVIEYLLKNARVLRRMDIY 380 (390)
Q Consensus 316 ~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~v~i~~~~-g~~~e~~~~~~ll~~a~~Le~l~i~ 380 (390)
+..... . ...-....+. ..+|+.+.+.+-. +.+.+..+++.+..+...|+.+.|.
T Consensus 260 n~i~~~--~------~~~l~~~~~~--~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 260 NDITDD--G------AKDLAEVLAE--KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred CCCCcH--H------HHHHHHHHhc--CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 754210 0 0000001111 1467777665433 4455678888888888888887664
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.87 E-value=1.6e-06 Score=73.01 Aligned_cols=103 Identities=24% Similarity=0.284 Sum_probs=36.5
Q ss_pred CeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHh-HhhhcCC
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHR-DLYRCCP 192 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~-~ll~~cp 192 (390)
+.++|+|+.... .--..+. .+.+|++|+|++|.+..+. ....+++|++|+|++..+.+ +. .+...||
T Consensus 20 ~~~~L~L~~n~I------~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~---i~~~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRGNQI------STIENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISS---ISEGLDKNLP 88 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S----CHHHHHH-T
T ss_pred cccccccccccc------ccccchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCc---cccchHHhCC
Confidence 457777766522 1112343 3578999999999887776 67788999999999888864 32 3445799
Q ss_pred ccceEEEeceecCCCCeeEEE--EccceeEEEeeeeeccCCCC
Q 045124 193 VLDDLYVRGNIAEPLPFQFDV--VSTSVRNLNSEFYLEDKHFD 233 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i--~~~~L~~L~i~~~~~~~~~~ 233 (390)
.|++|.+.++...++.. +.. ..|+|+.|.+ .++++.
T Consensus 89 ~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L----~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNE-LEPLSSLPKLRVLSL----EGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCC-CGGGGG-TT--EEE-----TT-GGG
T ss_pred cCCEEECcCCcCCChHH-hHHHHcCCCcceeec----cCCccc
Confidence 99999999887755443 111 3577888888 565543
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=2.5e-06 Score=77.38 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=63.5
Q ss_pred HHHHHHhcccCCCceeEEEEEEccCCChhHHHHHHHHHHh--CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcC
Q 045124 74 EFVSDILDRVNLLVIRRFYLHCLQSYDAEVLRDWVVRGWT--NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQG 151 (390)
Q Consensus 74 ~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~~~~--~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~ 151 (390)
+-|-..+...+. +.++.+. ...-.....+|+....+ +.+++.+++.. +.-+..-++|..+ +.|
T Consensus 20 ~~v~~~~~~~~s--~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L------~~l---- 84 (382)
T KOG1909|consen 20 KDVEEELEPMDS--LTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEAL------KML---- 84 (382)
T ss_pred hhHHHHhcccCc--eEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHH------HHH----
Confidence 334444444333 5555543 33345667788887665 35566666433 2112223333311 111
Q ss_pred eeecCCCCCCcccCCcccEEEeeeEEECC--CchHhHhhhcCCccceEEEeceec
Q 045124 152 NITLDPDPDQRVIFPSLRILHMDVIQLGV--SGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 152 ~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~--~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
. + ....+|+|++|+|+...++. ...+..++++|..|++|.|.+|..
T Consensus 85 ---~--~--aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 85 ---S--K--ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ---H--H--HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 0 1 34566778888888777765 256889999999999999999975
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.5e-06 Score=77.30 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=62.3
Q ss_pred HHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCC--CCCCcccCCcccEEEeeeEEEC-CCchHhHh
Q 045124 111 GWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDP--DPDQRVIFPSLRILHMDVIQLG-VSGHHRDL 187 (390)
Q Consensus 111 ~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~--~~~~~~~~~~Lk~L~L~~v~~~-~~~~l~~l 187 (390)
|-.+++++|+|.++ .+ -....+-..+.+|+.|..|+|+.|....- .....---+.|+.|+|+++.=. ...++..+
T Consensus 231 AkN~~L~~lnlsm~-sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 231 AKNSNLVRLNLSMC-SG-FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred hccccceeeccccc-cc-cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence 44678999999887 32 12223333445789999999999865321 1001123578999999987322 23678889
Q ss_pred hhcCCccceEEEeceec
Q 045124 188 YRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 188 l~~cp~Le~L~l~~c~~ 204 (390)
...||.|-+|+|++|..
T Consensus 309 ~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HHhCCceeeeccccccc
Confidence 99999999999998865
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.81 E-value=3.4e-05 Score=84.33 Aligned_cols=95 Identities=20% Similarity=0.118 Sum_probs=48.9
Q ss_pred cceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc--eeeeccCCcceeEEeeeeeeee-cCCC----Cc
Q 045124 216 TSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA--QYILRNLNLLEKADIGIGGVFM-CPRG----GG 288 (390)
Q Consensus 216 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~-~~~~----~~ 288 (390)
++|+.|.+ .+|..... .....-..++|+.|++.++... .+...++++|+.++++.|..+. ++.. ..
T Consensus 778 ~sL~~L~L----s~n~~l~~---lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~ 850 (1153)
T PLN03210 778 PSLTRLFL----SDIPSLVE---LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISD 850 (1153)
T ss_pred ccchheeC----CCCCCccc---cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCE
Confidence 56777777 55542210 0112236778888888764321 1112257778888877654321 1100 00
Q ss_pred cC-CCccHHHHHhhhccCCCccEEEEeccc
Q 045124 289 FD-FDHWSDERISFLPEVYNVNSLALSGCT 317 (390)
Q Consensus 289 f~-~~~~~~~l~~lL~~~p~L~~L~l~~~~ 317 (390)
++ .......+..-+..+++|+.|.|.+|.
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCCCC
Confidence 00 111223344456778888888888764
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.4e-06 Score=79.67 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=104.8
Q ss_pred CCcccEEEEcCeeecCCCC-CCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEE-Eccce
Q 045124 141 STALEVLKLQGNITLDPDP-DQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDV-VSTSV 218 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~-~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i-~~~~L 218 (390)
.++|+.|+|+.+.+..... .....+++||+|.|.+|.+.- .++..++..||.|+.|.+..+....... ... ...+|
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L 248 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKA-TSTKILQTL 248 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceec-chhhhhhHH
Confidence 4788899998887643221 133478999999999999995 9999999999999999999986311111 001 24679
Q ss_pred eEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccce---------eeeccCCcceeEEeeeeeeeecCCCCcc
Q 045124 219 RNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQ---------YILRNLNLLEKADIGIGGVFMCPRGGGF 289 (390)
Q Consensus 219 ~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~---------~~~~~~~~L~~l~l~~~~~~~~~~~~~f 289 (390)
+.|.+ .+..+... ......-..|+|..|.++.+.... ......++|+.+.+.......
T Consensus 249 ~~LdL----s~N~li~~--~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~------- 315 (505)
T KOG3207|consen 249 QELDL----SNNNLIDF--DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD------- 315 (505)
T ss_pred hhccc----cCCccccc--ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-------
Confidence 99999 67666543 223556688889988887643211 123567888888875444322
Q ss_pred CCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 290 DFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 290 ~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
|..+- =++..+||+.|.+.....
T Consensus 316 -----w~sl~-~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 316 -----WRSLN-HLRTLENLKHLRITLNYL 338 (505)
T ss_pred -----ccccc-hhhccchhhhhhcccccc
Confidence 22221 255678888887766543
No 16
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.65 E-value=5.3e-05 Score=42.01 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.8
Q ss_pred cccEEEeeeEEECCCchHhHhhhcCC
Q 045124 167 SLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 167 ~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
+||+|+|..|.+.++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999999987668999999998
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.63 E-value=4e-06 Score=78.29 Aligned_cols=187 Identities=17% Similarity=0.118 Sum_probs=92.6
Q ss_pred CCcccEEEeeeEEECC--CchHhHhhhcCCccceEEEeceecCCCCe-----eEEEEc-cceeEEEeeeeeccCCCCCCC
Q 045124 165 FPSLRILHMDVIQLGV--SGHHRDLYRCCPVLDDLYVRGNIAEPLPF-----QFDVVS-TSVRNLNSEFYLEDKHFDNED 236 (390)
Q Consensus 165 ~~~Lk~L~L~~v~~~~--~~~l~~ll~~cp~Le~L~l~~c~~~~~~~-----~l~i~~-~~L~~L~i~~~~~~~~~~~~~ 236 (390)
+++|+.|+|+++.+.. ...+..+..+ +.|++|++.+|...+... .+. .. ++|+.|.+ .+|.+...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L----~~n~l~~~- 152 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVL----GRNRLEGA- 152 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEc----CCCcCCch-
Confidence 4466666666555542 1223333333 446666666654421000 000 12 45666666 45543310
Q ss_pred CCcce---EEEecCccceEEeeecccc-------eeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCC
Q 045124 237 NVSLT---FEINTQNLVCLELRENFFA-------QYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVY 306 (390)
Q Consensus 237 ~~~~~---~~i~ap~L~~L~~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p 306 (390)
+... .....++|+.|+++++... ...+...++|++++++.+.. .......+...+..+|
T Consensus 153 -~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i----------~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 153 -SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL----------TDEGASALAETLASLK 221 (319)
T ss_pred -HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc----------ChHHHHHHHHHhcccC
Confidence 0000 1112345666666654221 11234456899988864431 0112345666778899
Q ss_pred CccEEEEecccccccCCCCCCcccccccCCCccch---hhcccceEEEEecC-CchhHHHHHHHHHhcccccceEEEEEe
Q 045124 307 NVNSLALSGCTVGEAKGEFPDCVQRWEERDVPADC---LRNCLRGISVRGFG-GKLHELQVIEYLLKNARVLRRMDIYAS 382 (390)
Q Consensus 307 ~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~~c---~~~~Lk~v~i~~~~-g~~~e~~~~~~ll~~a~~Le~l~i~~~ 382 (390)
+|+.|.++.+.... .. . . ..... ....|+.+.+.+.. +...-..+++++ .+.+.|+.+.+...
T Consensus 222 ~L~~L~ls~n~l~~--~~---~----~---~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N 288 (319)
T cd00116 222 SLEVLNLGDNNLTD--AG---A----A---ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGN 288 (319)
T ss_pred CCCEEecCCCcCch--HH---H----H---HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCC
Confidence 99999999874421 00 0 0 01111 12578888887654 222334555654 44488888877543
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.61 E-value=6e-05 Score=82.48 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=64.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeee-cCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNIT-LDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~-~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
.++++|+|..+ ....+|..+..+++|+.|+|+++.. ...| ....+++|++|+|.+|... ..+..-+..++
T Consensus 611 ~~L~~L~L~~s-----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L--~~lp~si~~L~ 681 (1153)
T PLN03210 611 ENLVKLQMQGS-----KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSL--VELPSSIQYLN 681 (1153)
T ss_pred cCCcEEECcCc-----cccccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCc--cccchhhhccC
Confidence 56777777543 2334566666778888888877643 3444 4566788888888876543 23444456778
Q ss_pred ccceEEEeceec-CCCCeeEEEEccceeEEEeeeeeccCC
Q 045124 193 VLDDLYVRGNIA-EPLPFQFDVVSTSVRNLNSEFYLEDKH 231 (390)
Q Consensus 193 ~Le~L~l~~c~~-~~~~~~l~i~~~~L~~L~i~~~~~~~~ 231 (390)
.|+.|++.+|.. ..+. ..+..++|+.|.+ .+|.
T Consensus 682 ~L~~L~L~~c~~L~~Lp--~~i~l~sL~~L~L----sgc~ 715 (1153)
T PLN03210 682 KLEDLDMSRCENLEILP--TGINLKSLYRLNL----SGCS 715 (1153)
T ss_pred CCCEEeCCCCCCcCccC--CcCCCCCCCEEeC----CCCC
Confidence 888888888754 1111 1124567777777 5554
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.58 E-value=5.5e-05 Score=73.32 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeE
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRN 220 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~ 220 (390)
..+|..|+|+.+++..+|+..+.++|+|+.|.|....+..... --+.+.|.|+.|.|..+....+..+.--...++++
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh--hhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 3466666666666666665455556666666666555542111 11334555666666555443222212234455555
Q ss_pred EEe
Q 045124 221 LNS 223 (390)
Q Consensus 221 L~i 223 (390)
|++
T Consensus 274 l~L 276 (873)
T KOG4194|consen 274 LNL 276 (873)
T ss_pred eec
Confidence 555
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.56 E-value=3.7e-05 Score=52.88 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=43.8
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEecee
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNI 203 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~ 203 (390)
++|++|.+.+|.+..+|+..+.++++|++|+|++..+.. --...+.++|.|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCCc
Confidence 467888888887766665566778888888888777753 223467788888888887764
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.44 E-value=8.6e-06 Score=68.63 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=16.9
Q ss_pred cCCcccEEEEcCeeecCCCCCCcc-cCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccce
Q 045124 140 TSTALEVLKLQGNITLDPDPDQRV-IFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSV 218 (390)
Q Consensus 140 ~c~~L~~L~L~~~~~~~~~~~~~~-~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L 218 (390)
.+.+++.|+|.++.+..+. ... .+.+|+.|+|++..+.. ++. +..++.|++|.+.++........+.-..|+|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~---l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK---LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----TT-----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCcc---ccC-ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3446677777776655443 222 46677777777666643 222 3456777777777666533321010123566
Q ss_pred eEEEe
Q 045124 219 RNLNS 223 (390)
Q Consensus 219 ~~L~i 223 (390)
+.|.+
T Consensus 91 ~~L~L 95 (175)
T PF14580_consen 91 QELYL 95 (175)
T ss_dssp -EEE-
T ss_pred CEEEC
Confidence 66666
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=1.7e-05 Score=74.11 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=87.1
Q ss_pred CCcccEEEEcCeeecCCCC-CCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCe-eEEEEccce
Q 045124 141 STALEVLKLQGNITLDPDP-DQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPF-QFDVVSTSV 218 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~-~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~-~l~i~~~~L 218 (390)
.++|+...|.++....++. .....||+++.|+|++.-+.....+.+++.-.|+||.|+|+.+....... +..-..+.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4678888888876544331 24567899999999988777666788888889999999998887632211 122245789
Q ss_pred eEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeeccCCcceeEEeeeee
Q 045124 219 RNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRNLNLLEKADIGIGG 279 (390)
Q Consensus 219 ~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~~~~L~~l~l~~~~ 279 (390)
|.|.+ ..|.+.. .....+....|+|+.|.+.++... ......+..|++++++...
T Consensus 200 K~L~l----~~CGls~--k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 200 KQLVL----NSCGLSW--KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred heEEe----ccCCCCH--HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 99999 7887764 122345667888888888765321 1122334556666665443
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=6.3e-05 Score=76.96 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=104.4
Q ss_pred CcccEEEEcCeeec--CCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcccee
Q 045124 142 TALEVLKLQGNITL--DPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVR 219 (390)
Q Consensus 142 ~~L~~L~L~~~~~~--~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~ 219 (390)
.+|++|+++|.... .++......||+|++|.++++.+.. +++..+-.++|+|+.|+|+++...++.. +. ..++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~nl~G-IS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISNLSG-IS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccCcHH-Hh-ccccHH
Confidence 67899999885432 2332234579999999999999987 7799999999999999999998766543 21 446777
Q ss_pred EEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccccee---------eeccCCcceeEEeeeeeeeecCCCCccC
Q 045124 220 NLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQY---------ILRNLNLLEKADIGIGGVFMCPRGGGFD 290 (390)
Q Consensus 220 ~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~---------~~~~~~~L~~l~l~~~~~~~~~~~~~f~ 290 (390)
.|.+ .+-.+... ..-.-.+.-.+|+.|+++....... .-..+|+|+.++.++..
T Consensus 199 ~L~m----rnLe~e~~--~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd----------- 261 (699)
T KOG3665|consen 199 VLSM----RNLEFESY--QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD----------- 261 (699)
T ss_pred HHhc----cCCCCCch--hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-----------
Confidence 7777 44443321 1122445778899999987432111 12347888888875322
Q ss_pred CCccHHHHHhhhccCCCccEEEEecc
Q 045124 291 FDHWSDERISFLPEVYNVNSLALSGC 316 (390)
Q Consensus 291 ~~~~~~~l~~lL~~~p~L~~L~l~~~ 316 (390)
-....+..+++.-|+|++...-.+
T Consensus 262 --i~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 262 --INEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred --hhHHHHHHHHHhCccHhhhhhhhh
Confidence 124677888888888888876543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.19 E-value=0.00033 Score=63.93 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=100.1
Q ss_pred ceEEEeeCCCCCCCCCCccchhHHHHHHHHHhcccCCCceeEEEEEEcc-CC---C-hhHHHHHHHHHHhC-CeeEEEEE
Q 045124 49 HQLALDDSDLLEPDLSPDTIAWSFQEFVSDILDRVNLLVIRRFYLHCLQ-SY---D-AEVLRDWVVRGWTN-NVVEVDIR 122 (390)
Q Consensus 49 ~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~~l~l~~~~-~~---~-~~~~~~wl~~~~~~-~v~~L~L~ 122 (390)
..++|+...| ....+.++..+|.+.+. ++...++--. +. . +..+.........+ .++.|+|+
T Consensus 33 ~~l~lsgnt~----------G~EAa~~i~~~L~~~~~--L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 33 TKLDLSGNTF----------GTEAARAIAKVLASKKE--LREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred EEEeccCCch----------hHHHHHHHHHHHhhccc--ceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 4566665555 23445677777777653 4443332111 11 1 23333333333444 78899997
Q ss_pred eccCCCCceecCCCCCccCCcccEEEEcCeeecCCC-------------CCCcccCCcccEEEeeeEEECCC--chHhHh
Q 045124 123 VDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPD-------------PDQRVIFPSLRILHMDVIQLGVS--GHHRDL 187 (390)
Q Consensus 123 ~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~-------------~~~~~~~~~Lk~L~L~~v~~~~~--~~l~~l 187 (390)
-+..+......+-.-+.+|.+|++|.|.+|.+-... ......=+.|+++...+.++.+. ..+...
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 765554444455555667999999999999642110 01223457899999998888763 346778
Q ss_pred hhcCCccceEEEeceecCCCCeeEE------EEccceeEEEeeeeeccCCCC
Q 045124 188 YRCCPVLDDLYVRGNIAEPLPFQFD------VVSTSVRNLNSEFYLEDKHFD 233 (390)
Q Consensus 188 l~~cp~Le~L~l~~c~~~~~~~~l~------i~~~~L~~L~i~~~~~~~~~~ 233 (390)
+..+|.||++.+..+....-+ +. -++|+|+.|++ .++.|.
T Consensus 181 ~~~~~~leevr~~qN~I~~eG--~~al~eal~~~~~LevLdl----~DNtft 226 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEG--VTALAEALEHCPHLEVLDL----RDNTFT 226 (382)
T ss_pred HHhccccceEEEecccccCch--hHHHHHHHHhCCcceeeec----ccchhh
Confidence 888999999999877652111 10 15677777777 555543
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.96 E-value=0.00014 Score=70.57 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=19.9
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEE
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQL 178 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~ 178 (390)
.+|+..+|++|+|+++.+..+..+....+++|+.|+|+...+
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 344455555555555544333222344455555555554444
No 26
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00015 Score=64.82 Aligned_cols=219 Identities=16% Similarity=0.057 Sum_probs=126.2
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
...|++++|..+... ..-++-..+-..+.|+.|+|+.+.+.....+.+....+|++|-|.+..++- ......++..|
T Consensus 70 ~~~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w-~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW-TQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh-hhhhhhhhcch
Confidence 357889999655221 111222223345789999998776533221223567799999999888774 77888899999
Q ss_pred ccceEEEeceec----CCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc---------
Q 045124 193 VLDDLYVRGNIA----EPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF--------- 259 (390)
Q Consensus 193 ~Le~L~l~~c~~----~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~--------- 259 (390)
.+.+|+++.+.. .+... ..--+|.++.|.. ..|.+... .....+.-..||+..+-+...+.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c-~e~~s~~v~tlh~----~~c~~~~w-~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNC-IEDWSTEVLTLHQ----LPCLEQLW-LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhhhhhhccchhhhhcccccc-ccccchhhhhhhc----CCcHHHHH-HHHHhHHhhcccchheeeecCcccchhhcccC
Confidence 999999998843 11112 1224577888888 77775432 11123344567777766654321
Q ss_pred ceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccccccCCCCCCcccccccCCCcc
Q 045124 260 AQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVGEAKGEFPDCVQRWEERDVPA 339 (390)
Q Consensus 260 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~w~~~~~~~ 339 (390)
.+....++-+|...+| ..|+++-. |..+|.|..|.+...+....-.+ + +. .-+
T Consensus 221 e~~p~~~~LnL~~~~i-----------------dswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~---~----er-r~l- 273 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNI-----------------DSWASVDA-LNGFPQLVDLRVSENPLSDPLRG---G----ER-RFL- 273 (418)
T ss_pred CCCCcchhhhhccccc-----------------ccHHHHHH-HcCCchhheeeccCCcccccccC---C----cc-eEE-
Confidence 1111222223333322 34665544 78899999999988866321111 1 11 111
Q ss_pred chhhcccceEEEEec-C-----CchhHHHHHHHHHh
Q 045124 340 DCLRNCLRGISVRGF-G-----GKLHELQVIEYLLK 369 (390)
Q Consensus 340 ~c~~~~Lk~v~i~~~-~-----g~~~e~~~~~~ll~ 369 (390)
+..+|..|++.+= + -.+.|+.|++|.+.
T Consensus 274 --lIaRL~~v~vLNGskIss~er~dSEr~fVRyym~ 307 (418)
T KOG2982|consen 274 --LIARLTKVQVLNGSKISSRERKDSERRFVRYYMS 307 (418)
T ss_pred --EEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence 1234555554432 1 23467899999876
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.80 E-value=0.00023 Score=66.42 Aligned_cols=160 Identities=17% Similarity=0.072 Sum_probs=85.9
Q ss_pred ccCCcccEEEEcCeeecC-CC-CCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecC---CCCeeEEE
Q 045124 139 CTSTALEVLKLQGNITLD-PD-PDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAE---PLPFQFDV 213 (390)
Q Consensus 139 ~~c~~L~~L~L~~~~~~~-~~-~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~---~~~~~l~i 213 (390)
..|..|+.|+.++|.... .+ ..--.++++|+.|-|.++.-.++..+..+-.+||.||+|.+..|... .+.. +..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls~ 369 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-LSR 369 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-hcc
Confidence 346777777777775421 10 00123667888888887764444667777777888888888877542 1222 556
Q ss_pred EccceeEEEeeeeeccCCCCCCCCCcce---EEEecCccceEEeeeccc----ceeeeccCCcceeEEeeeeeeeecCCC
Q 045124 214 VSTSVRNLNSEFYLEDKHFDNEDNVSLT---FEINTQNLVCLELRENFF----AQYILRNLNLLEKADIGIGGVFMCPRG 286 (390)
Q Consensus 214 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~---~~i~ap~L~~L~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~ 286 (390)
.+|.|+.|.+ ..|.-... .+... ..-..-.|+.+.+..... ....+.++++|+.+++..+..+.
T Consensus 370 ~C~~lr~lsl----shce~itD-~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt---- 440 (483)
T KOG4341|consen 370 NCPRLRVLSL----SHCELITD-EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT---- 440 (483)
T ss_pred CCchhccCCh----hhhhhhhh-hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh----
Confidence 6777777777 55544332 11111 111233344444444322 11223445555555443332221
Q ss_pred CccCCCccHHHHHhhhccCCCccEEEEecc
Q 045124 287 GGFDFDHWSDERISFLPEVYNVNSLALSGC 316 (390)
Q Consensus 287 ~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~ 316 (390)
-+.+..+-.++|+++...+.+.
T Consensus 441 --------k~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 441 --------KEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred --------hhhhHHHHhhCccceehhhccC
Confidence 2556666667777766665554
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.51 E-value=0.0019 Score=44.23 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=45.0
Q ss_pred CeeEEEEEeccCCCCceecCCCCCc-cCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEE
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLC-TSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQ 177 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~-~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~ 177 (390)
++++|++..+ .-..+|+..+ .+++|++|+++++.+..+++..+.++++|++|+|++..
T Consensus 2 ~L~~L~l~~n-----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-----KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-----TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-----CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5677888544 2446676554 58999999999998877776678899999999998753
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.42 E-value=0.00014 Score=71.94 Aligned_cols=113 Identities=21% Similarity=0.127 Sum_probs=67.1
Q ss_pred CCccCCcccEEEEcCe-eecC-CC---CCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec-CC--CC
Q 045124 137 NLCTSTALEVLKLQGN-ITLD-PD---PDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA-EP--LP 208 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~-~~~~-~~---~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~-~~--~~ 208 (390)
....|+.|+.|++++| .... .+ ......+++|+.|+|.++...++..+..+...||.||.|.+..|.. .+ +.
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 3455788888888763 2111 11 1134467888888888887333477888888888888888777774 22 22
Q ss_pred eeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEee
Q 045124 209 FQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELR 255 (390)
Q Consensus 209 ~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~ 255 (390)
. +.-.+|.|++|.+ ..|....+ .+...+....|+|+.|.+.
T Consensus 289 ~-i~~~~~~L~~L~l----~~c~~~~d-~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 289 S-IAERCPSLRELDL----SGCHGLTD-SGLEALLKNCPNLRELKLL 329 (482)
T ss_pred H-HHHhcCcccEEee----ecCccchH-HHHHHHHHhCcchhhhhhh
Confidence 2 2225677888888 56655422 2222333456655555543
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.38 E-value=9.8e-05 Score=60.75 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=35.8
Q ss_pred ecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEecee
Q 045124 132 LDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNI 203 (390)
Q Consensus 132 ~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~ 203 (390)
...|+.+-...+|+.|.+.++.+.++|. ....+|.||.|++.-.++.. +..=+.++|.||.|++..+.
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~---lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNI---LPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhc---CccccCCCchhhhhhccccc
Confidence 3445555555666666666666555553 34456666666655333221 11223346666666666554
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.26 E-value=0.0068 Score=62.93 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+..+|++... ....+|..+ .++|+.|+|.+|.+..+|. ..+++|++|+|.++.+.. +..-+ .+.
T Consensus 178 ~~~~~L~L~~~-----~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~---~l~~nL~~L~Ls~N~Lts---LP~~l--~~~ 242 (754)
T PRK15370 178 NNKTELRLKIL-----GLTTIPACI--PEQITTLILDNNELKSLPE---NLQGNIKTLYANSNQLTS---IPATL--PDT 242 (754)
T ss_pred cCceEEEeCCC-----CcCcCCccc--ccCCcEEEecCCCCCcCCh---hhccCCCEEECCCCcccc---CChhh--hcc
Confidence 34556666432 122444433 2356777777766655552 223567777776665542 11111 235
Q ss_pred cceEEEeceec
Q 045124 194 LDDLYVRGNIA 204 (390)
Q Consensus 194 Le~L~l~~c~~ 204 (390)
|+.|.|.+|..
T Consensus 243 L~~L~Ls~N~L 253 (754)
T PRK15370 243 IQEMELSINRI 253 (754)
T ss_pred ccEEECcCCcc
Confidence 66666666554
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0011 Score=59.34 Aligned_cols=164 Identities=14% Similarity=0.038 Sum_probs=99.3
Q ss_pred CCccCCcccEEEEcCeeecCCCCC--CcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecC-CCCeeEEE
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPD--QRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAE-PLPFQFDV 213 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~--~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~-~~~~~l~i 213 (390)
.++.-..++.|.+.+|.+.+.... ....+..++.|+|.+..+++...+.+++...|+|+.|+|+.+... ++.. +..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~ 118 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPL 118 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-Ccc
Confidence 334444666778888765433210 123578999999999999988889999999999999999988762 2222 222
Q ss_pred EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeee-----c-cCCcceeEEeeeeeeeecCCCC
Q 045124 214 VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYIL-----R-NLNLLEKADIGIGGVFMCPRGG 287 (390)
Q Consensus 214 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~-----~-~~~~L~~l~l~~~~~~~~~~~~ 287 (390)
-..+|+.|.+ .+..... ....+..-+.|.++.|.++.+......+ . -.+.+..+..-.|.
T Consensus 119 p~~nl~~lVL----NgT~L~w--~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~-------- 184 (418)
T KOG2982|consen 119 PLKNLRVLVL----NGTGLSW--TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL-------- 184 (418)
T ss_pred cccceEEEEE----cCCCCCh--hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcH--------
Confidence 3347899998 4443322 1113344466666666665532111000 0 01122222221111
Q ss_pred ccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 288 GFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 288 ~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
..-|..+..+-+.+||+..+++-.++..
T Consensus 185 ----~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 185 ----EQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred ----HHHHHHHHhHHhhcccchheeeecCccc
Confidence 1236778889999999999999888553
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.00049 Score=67.97 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=79.0
Q ss_pred cCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEece-ecCCC-----CeeEEEEccceeEEEeeeeeccCCCCCCCC
Q 045124 164 IFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGN-IAEPL-----PFQFDVVSTSVRNLNSEFYLEDKHFDNEDN 237 (390)
Q Consensus 164 ~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c-~~~~~-----~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~ 237 (390)
.++.|+.|.+.++.-..+..+..+...||.|++|.+..| ..... .. +...+++|++|.+ ..|....+ .
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l----~~~~~isd-~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDL----SGCGLVTD-I 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhh-hhhhcCCcCccch----hhhhccCc-h
Confidence 367788888887755543457777778888888888763 21100 01 1224467777777 45542211 2
Q ss_pred CcceEEEecCccceEEeeeccc-----ceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEE
Q 045124 238 VSLTFEINTQNLVCLELRENFF-----AQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLA 312 (390)
Q Consensus 238 ~~~~~~i~ap~L~~L~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~ 312 (390)
+...+.-.+|+|+.|.+.++.. .......+++|+++++..+..+. ...+..+++.||+|++|.
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~------------d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT------------DSGLEALLKNCPNLRELK 327 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch------------HHHHHHHHHhCcchhhhh
Confidence 2333344477788877554431 11233457778888777655431 355667777888888877
Q ss_pred Eecc
Q 045124 313 LSGC 316 (390)
Q Consensus 313 l~~~ 316 (390)
+...
T Consensus 328 ~~~~ 331 (482)
T KOG1947|consen 328 LLSL 331 (482)
T ss_pred hhhc
Confidence 6554
No 34
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.08 E-value=5.9e-05 Score=73.72 Aligned_cols=176 Identities=20% Similarity=0.116 Sum_probs=88.3
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCee
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQ 210 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~ 210 (390)
.-.+|+.+-+...|++|+|+++-+....-...-...+|.+|++++..-.- ..+..-+.+..+|.+++++.+.......
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-~N~Ptsld~l~NL~dvDlS~N~Lp~vPe- 239 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-DNIPTSLDDLHNLRDVDLSENNLPIVPE- 239 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-hcCCCchhhhhhhhhccccccCCCcchH-
Confidence 34455555555666666666553311100011134455556666543221 2233334456667777777665532222
Q ss_pred EEEEccceeEEEeeeeeccCCCCCCCCCcceEEE-ecCccceEEeeeccc--ceeeeccCCcceeEEeeeeeee--ecCC
Q 045124 211 FDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEI-NTQNLVCLELRENFF--AQYILRNLNLLEKADIGIGGVF--MCPR 285 (390)
Q Consensus 211 l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i-~ap~L~~L~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~--~~~~ 285 (390)
.--..++|++|++ .++..... ...+ -=.+|++|+++.+.. .+..++.++.|+++........ -.|+
T Consensus 240 cly~l~~LrrLNL----S~N~iteL-----~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNL----SGNKITEL-----NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred HHhhhhhhheecc----CcCceeee-----eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 1124577888888 44433211 1111 123678888877542 2345667777776655322110 0112
Q ss_pred C-------CccC-CCccHHHHHhhhccCCCccEEEEeccc
Q 045124 286 G-------GGFD-FDHWSDERISFLPEVYNVNSLALSGCT 317 (390)
Q Consensus 286 ~-------~~f~-~~~~~~~l~~lL~~~p~L~~L~l~~~~ 317 (390)
+ .+|. .++..+.+..=|-.|+.|++|.+....
T Consensus 311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc
Confidence 1 1232 233345566667789999999987654
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.06 E-value=0.00066 Score=69.36 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeE
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRN 220 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~ 220 (390)
.+.|+.|+|+++++-.+|......++.|+.|+|++..+. .+..=++.|+.|+.|....+....+.. + ..+|.|+.
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~---~Lp~tva~~~~L~tL~ahsN~l~~fPe-~-~~l~qL~~ 456 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT---TLPDTVANLGRLHTLRAHSNQLLSFPE-L-AQLPQLKV 456 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh---hhhHHHHhhhhhHHHhhcCCceeechh-h-hhcCcceE
Confidence 355556666555544444334445555666666655543 244445556666666655554322222 1 14577888
Q ss_pred EEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecc
Q 045124 221 LNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENF 258 (390)
Q Consensus 221 L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~ 258 (390)
+.+ ..+..... .-......|+|++|+++|+.
T Consensus 457 lDl----S~N~L~~~---~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDL----SCNNLSEV---TLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Eec----ccchhhhh---hhhhhCCCcccceeeccCCc
Confidence 887 33332210 01112233688888888864
No 36
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.85 E-value=0.013 Score=49.75 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=31.5
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
.+.|..|.|+++++..+.+.-...+|+|++|.|.+.++..-+++.. +.+||.|++|.+.++..
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence 3455666666655544433233345566666666554433222322 33466666665555543
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.83 E-value=0.02 Score=59.43 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+-..|++... ....+|+.+. ++|+.|.+..+.+..+|. ..++|++|+|++..+.. +.. ..+.
T Consensus 201 ~~~~~LdLs~~-----~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts---LP~---lp~s 263 (788)
T PRK15387 201 NGNAVLNVGES-----GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS---LPV---LPPG 263 (788)
T ss_pred CCCcEEEcCCC-----CCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCc---ccC---cccc
Confidence 34455555433 2235666554 367788887776666552 35778888887766543 221 1356
Q ss_pred cceEEEeceec
Q 045124 194 LDDLYVRGNIA 204 (390)
Q Consensus 194 Le~L~l~~c~~ 204 (390)
|++|+|.+|..
T Consensus 264 L~~L~Ls~N~L 274 (788)
T PRK15387 264 LLELSIFSNPL 274 (788)
T ss_pred cceeeccCCch
Confidence 66666666544
No 38
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.83 E-value=0.0011 Score=58.41 Aligned_cols=133 Identities=18% Similarity=0.072 Sum_probs=83.5
Q ss_pred CeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCcc
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVL 194 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~L 194 (390)
.+.++.++.+. .....+....-....|+.|++.++.+.... ..-.+|+||+|.++.........+.-++..||+|
T Consensus 19 ~v~~l~lD~~~---s~~g~~~gl~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l 93 (260)
T KOG2739|consen 19 QVDELFLDNAR---SGAGKLGGLTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNL 93 (260)
T ss_pred hhhhhhcchhh---hcCCCcccccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCce
Confidence 34566665441 112223333334567778887777665443 4446789999999988555446777788889999
Q ss_pred ceEEEeceecCCCCeeEEE--EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeec
Q 045124 195 DDLYVRGNIAEPLPFQFDV--VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELREN 257 (390)
Q Consensus 195 e~L~l~~c~~~~~~~~l~i--~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~ 257 (390)
..|+++.+...++.. +.- .-++|++|.+ .+|....++.-...+..-+|+|++|+..+.
T Consensus 94 ~~l~ls~Nki~~lst-l~pl~~l~nL~~Ldl----~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 94 KVLNLSGNKIKDLST-LRPLKELENLKSLDL----FNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred eEEeecCCccccccc-cchhhhhcchhhhhc----ccCCccccccHHHHHHHHhhhhcccccccc
Confidence 999999998754433 221 2245777777 677654432223345557788888776553
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.72 E-value=0.0061 Score=63.26 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=86.5
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|+|+.+. ...+|..+. ++|+.|+|+++.+..+|. .-+++|+.|+|+++.+.. +..-+ .+.
T Consensus 241 ~~L~~L~Ls~N~-----L~~LP~~l~--s~L~~L~Ls~N~L~~LP~---~l~~sL~~L~Ls~N~Lt~---LP~~l--p~s 305 (754)
T PRK15370 241 DTIQEMELSINR-----ITELPERLP--SALQSLDLFHNKISCLPE---NLPEELRYLSVYDNSIRT---LPAHL--PSG 305 (754)
T ss_pred ccccEEECcCCc-----cCcCChhHh--CCCCEEECcCCccCcccc---ccCCCCcEEECCCCcccc---Ccccc--hhh
Confidence 467777776552 224555443 478888888777665552 123578888888776653 11111 235
Q ss_pred cceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccceeeeccCCcceeE
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFAQYILRNLNLLEKA 273 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~~~~~~~~~~L~~l 273 (390)
|+.|++.+|....+.. ...++|+.|.+ .+|.+... .-.+ .++|+.|+++++......-.-.++|+.+
T Consensus 306 L~~L~Ls~N~Lt~LP~---~l~~sL~~L~L----s~N~Lt~L-----P~~l-~~sL~~L~Ls~N~L~~LP~~lp~~L~~L 372 (754)
T PRK15370 306 ITHLNVQSNSLTALPE---TLPPGLKTLEA----GENALTSL-----PASL-PPELQVLDVSKNQITVLPETLPPTITTL 372 (754)
T ss_pred HHHHHhcCCccccCCc---cccccceeccc----cCCccccC-----Chhh-cCcccEEECCCCCCCcCChhhcCCcCEE
Confidence 6666666665433221 12245666666 44443211 0001 2456666665543211100112345555
Q ss_pred EeeeeeeeecCCCC-----c----cCC-CccHHHHHhhhccCCCccEEEEecccc
Q 045124 274 DIGIGGVFMCPRGG-----G----FDF-DHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 274 ~l~~~~~~~~~~~~-----~----f~~-~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
+++.+.....|... . .+. ..-...+..++..+|++..|.+..-..
T Consensus 373 dLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 373 DVSRNALTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ECCCCcCCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 55433211111000 0 000 001134666677778888888877543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=95.43 E-value=0.011 Score=60.46 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=57.1
Q ss_pred cccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCC-CeeEEEEccceeEE
Q 045124 143 ALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPL-PFQFDVVSTSVRNL 221 (390)
Q Consensus 143 ~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-~~~l~i~~~~L~~L 221 (390)
.++.|+|.++.+....+.....+++|+.|+|++..+. +.+...+..++.|+.|+|.+|..... ...+ -..++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--GNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--CcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEE
Confidence 3778888887664332235567899999999988776 34555678899999999998876321 1101 145789999
Q ss_pred EeeeeeccCCC
Q 045124 222 NSEFYLEDKHF 232 (390)
Q Consensus 222 ~i~~~~~~~~~ 232 (390)
.+ .++.+
T Consensus 496 ~L----s~N~l 502 (623)
T PLN03150 496 NL----NGNSL 502 (623)
T ss_pred EC----cCCcc
Confidence 99 55554
No 41
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.42 E-value=0.0011 Score=65.19 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=105.4
Q ss_pred ceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCe
Q 045124 130 NFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPF 209 (390)
Q Consensus 130 ~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~ 209 (390)
....+|+.+|+...|+.|+|+.+.+...|. ....-+++-.|+|++..+.+ .=..+.-+..-|-.|+|+++..+.+..
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcch-hhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhccccchhhhcCH
Confidence 345789999999999999999998877773 56677888999999888764 123344556667778888887655443
Q ss_pred eEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc----ceeeeccCCcceeEEeeeeeeeecCC
Q 045124 210 QFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF----AQYILRNLNLLEKADIGIGGVFMCPR 285 (390)
Q Consensus 210 ~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~ 285 (390)
|++ ....|++|.+ .+++.... ..+ ..-....|+.|.+++... .+..+..+.+|..++++...
T Consensus 168 Q~R-RL~~LqtL~L----s~NPL~hf--QLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------ 233 (1255)
T KOG0444|consen 168 QIR-RLSMLQTLKL----SNNPLNHF--QLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------ 233 (1255)
T ss_pred HHH-HHhhhhhhhc----CCChhhHH--HHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC------
Confidence 222 4456888888 55543321 111 111445566777776432 23456677778877775332
Q ss_pred CCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 286 GGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 286 ~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
...+..-+=..++|..|.+++....
T Consensus 234 ---------Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 234 ---------LPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ---------CCcchHHHhhhhhhheeccCcCcee
Confidence 2233344445688888888887654
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.40 E-value=0.0091 Score=37.82 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=18.9
Q ss_pred CcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 166 PSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 166 ~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
++|++|+|.+..+. ++...+..||.|+.|++++|..
T Consensus 1 ~~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQIT---DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-S---SHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCc---ccCchHhCCCCCCEEEecCCCC
Confidence 34555555555553 2444455666666666666654
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.06 E-value=0.039 Score=46.98 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=52.8
Q ss_pred cccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECC-CchHhHhhhcCCccceEEEeceecC---CCCeeEEEEccce
Q 045124 143 ALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGV-SGHHRDLYRCCPVLDDLYVRGNIAE---PLPFQFDVVSTSV 218 (390)
Q Consensus 143 ~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~-~~~l~~ll~~cp~Le~L~l~~c~~~---~~~~~l~i~~~~L 218 (390)
....++|+.+.+...+ .+-++++|++|.|....+.. +..+.. ..|+|..|.+.++... ++.. + ..+|+|
T Consensus 43 ~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~p-L-a~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDP-L-ASCPKL 115 (233)
T ss_pred ccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcch-h-ccCCcc
Confidence 4556677776655555 56688999999999887764 233333 4688999999887652 3333 3 257788
Q ss_pred eEEEeeeeeccCCC
Q 045124 219 RNLNSEFYLEDKHF 232 (390)
Q Consensus 219 ~~L~i~~~~~~~~~ 232 (390)
+.|++ .+...
T Consensus 116 ~~Ltl----l~Npv 125 (233)
T KOG1644|consen 116 EYLTL----LGNPV 125 (233)
T ss_pred ceeee----cCCch
Confidence 88887 55544
No 44
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.98 E-value=0.002 Score=53.25 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=65.4
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+++.|.+... .-.++|..+.+.++|++|.++-+++...|. .+..||.|..|+|....+.. ..+..=+-....
T Consensus 56 ~nlevln~~nn-----qie~lp~~issl~klr~lnvgmnrl~~lpr-gfgs~p~levldltynnl~e-~~lpgnff~m~t 128 (264)
T KOG0617|consen 56 KNLEVLNLSNN-----QIEELPTSISSLPKLRILNVGMNRLNILPR-GFGSFPALEVLDLTYNNLNE-NSLPGNFFYMTT 128 (264)
T ss_pred hhhhhhhcccc-----hhhhcChhhhhchhhhheecchhhhhcCcc-ccCCCchhhhhhcccccccc-ccCCcchhHHHH
Confidence 45666777544 346899999999999999999887766663 78899999999999988876 444443445677
Q ss_pred cceEEEeceecC
Q 045124 194 LDDLYVRGNIAE 205 (390)
Q Consensus 194 Le~L~l~~c~~~ 205 (390)
|+.|++.+++++
T Consensus 129 lralyl~dndfe 140 (264)
T KOG0617|consen 129 LRALYLGDNDFE 140 (264)
T ss_pred HHHHHhcCCCcc
Confidence 888888888764
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.92 E-value=0.011 Score=37.47 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=27.3
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECC
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGV 180 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~ 180 (390)
++|++|+++++.+.++|+ ....+++|+.|+|++..+.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 468888888888777762 26788888888888877653
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.56 E-value=0.0023 Score=57.52 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=11.0
Q ss_pred hccCCCccEEEEeccccc
Q 045124 302 LPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 302 L~~~p~L~~L~l~~~~~~ 319 (390)
+-+.|+|+.|.+.+.+..
T Consensus 395 IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cccccHHHHHhhcCCCcc
Confidence 345677777776666543
No 47
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.31 E-value=0.081 Score=55.08 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEE
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQL 178 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~ 178 (390)
.+++.|.+..+. ...+|.. .++|+.|+|++|.+..+|. -.++|++|+|.+..+
T Consensus 222 ~~L~~L~L~~N~-----Lt~LP~l---p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 222 AHITTLVIPDNN-----LTSLPAL---PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPL 274 (788)
T ss_pred cCCCEEEccCCc-----CCCCCCC---CCCCcEEEecCCccCcccC----cccccceeeccCCch
Confidence 367777775441 2234432 3688888888887766652 246777777776554
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.19 E-value=0.028 Score=51.21 Aligned_cols=37 Identities=27% Similarity=0.621 Sum_probs=35.0
Q ss_pred CCcCCCCC----hHHHHHHHccCChHHHHHHHHhhhchHHh
Q 045124 6 RNFFYGLP----DDILRHIIACLPTKNAVGTSLISRQWIDL 42 (390)
Q Consensus 6 ~D~is~LP----d~iL~~Ils~Lp~~~~~rts~lSrrWr~l 42 (390)
.|.|+.|| |+|...|||+|...++..+-.+||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 58899999 99999999999999999999999999874
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.14 E-value=0.17 Score=48.50 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=69.6
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeec-CCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCC
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITL-DPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCP 192 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~-~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp 192 (390)
++.+.|+++.+. ...+|. + -.+|++|.+++|.-. ..| .. -.++|++|.+.+|... ..+ =+
T Consensus 52 ~~l~~L~Is~c~-----L~sLP~--L-P~sLtsL~Lsnc~nLtsLP--~~-LP~nLe~L~Ls~Cs~L-----~sL---P~ 112 (426)
T PRK15386 52 RASGRLYIKDCD-----IESLPV--L-PNELTEITIENCNNLTTLP--GS-IPEGLEKLTVCHCPEI-----SGL---PE 112 (426)
T ss_pred cCCCEEEeCCCC-----CcccCC--C-CCCCcEEEccCCCCcccCC--ch-hhhhhhheEccCcccc-----ccc---cc
Confidence 677888886541 223331 1 136889999887542 223 11 1358999999887321 111 24
Q ss_pred ccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceE-EEecCccceEEeeecccceeeeccC-Ccc
Q 045124 193 VLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTF-EINTQNLVCLELRENFFAQYILRNL-NLL 270 (390)
Q Consensus 193 ~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~-~i~ap~L~~L~~~~~~~~~~~~~~~-~~L 270 (390)
.|+.|.+....... +..-.++|+.|.+ ..+..... ..+ ..--++|++|.+.++... .....+ ++|
T Consensus 113 sLe~L~L~~n~~~~----L~~LPssLk~L~I----~~~n~~~~----~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP~SL 179 (426)
T PRK15386 113 SVRSLEIKGSATDS----IKNVPNGLTSLSI----NSYNPENQ----ARIDNLISPSLKTLSLTGCSNI-ILPEKLPESL 179 (426)
T ss_pred ccceEEeCCCCCcc----cccCcchHhheec----cccccccc----cccccccCCcccEEEecCCCcc-cCcccccccC
Confidence 68888886433322 3333467888888 33221100 011 112257999999875431 111112 467
Q ss_pred eeEEee
Q 045124 271 EKADIG 276 (390)
Q Consensus 271 ~~l~l~ 276 (390)
+.+.++
T Consensus 180 k~L~ls 185 (426)
T PRK15386 180 QSITLH 185 (426)
T ss_pred cEEEec
Confidence 767664
No 50
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.01 E-value=0.08 Score=48.00 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=30.3
Q ss_pred cCCCCChHHHHHHHc-----cCChHHHHHHHHhhhchHHh
Q 045124 8 FFYGLPDDILRHIIA-----CLPTKNAVGTSLISRQWIDL 42 (390)
Q Consensus 8 ~is~LPd~iL~~Ils-----~Lp~~~~~rts~lSrrWr~l 42 (390)
-|+.||||||..||. .|+.+++.++|.+||.|+..
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 478999999999986 45679999999999999864
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.22 E-value=0.033 Score=53.68 Aligned_cols=101 Identities=23% Similarity=0.195 Sum_probs=62.4
Q ss_pred CcccEEEEcCeeecCCCCCCcccCC--cccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcccee
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFP--SLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVR 219 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~--~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~ 219 (390)
+.++.|.+.++.+.+.+ ....+. +|+.|++.+..+.. +..-+..+|.|+.|.+.+|...++.. .....+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~--~~~~~~~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNITDIP--PLIGLLKSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLN 189 (394)
T ss_pred cceeEEecCCcccccCc--cccccchhhcccccccccchhh---hhhhhhccccccccccCCchhhhhhh-hhhhhhhhh
Confidence 56778888777776666 333332 78888888766543 32346678888888888887655443 222567788
Q ss_pred EEEeeeeeccCCCCCCCCCcceEEEecCc-cceEEeeec
Q 045124 220 NLNSEFYLEDKHFDNEDNVSLTFEINTQN-LVCLELREN 257 (390)
Q Consensus 220 ~L~i~~~~~~~~~~~~~~~~~~~~i~ap~-L~~L~~~~~ 257 (390)
.|.+ .+..+... ...+..++ |+++.+.+.
T Consensus 190 ~L~l----s~N~i~~l-----~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDL----SGNKISDL-----PPEIELLSALEELDLSNN 219 (394)
T ss_pred heec----cCCccccC-----chhhhhhhhhhhhhhcCC
Confidence 8888 55554321 22222444 777777665
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.82 E-value=0.042 Score=56.67 Aligned_cols=136 Identities=18% Similarity=0.136 Sum_probs=82.1
Q ss_pred CCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecC--CCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceE
Q 045124 165 FPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAE--PLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTF 242 (390)
Q Consensus 165 ~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~--~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 242 (390)
-.+|+.|++++......+=..++-..+|.|+.|.+.+-... ++.. ++.+-|+|.+|.| .++..... .-
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDI----S~TnI~nl-----~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDI----SGTNISNL-----SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-HhhccCccceeec----CCCCccCc-----HH
Confidence 35788888888655542334555567899999988876542 2223 5556688889988 56654321 11
Q ss_pred EEecCccceEEeeecccc----eeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEecccc
Q 045124 243 EINTQNLVCLELRENFFA----QYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTV 318 (390)
Q Consensus 243 ~i~ap~L~~L~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~ 318 (390)
.-+-.||+.|.+.+-... ...+-++.+|+.++++.......+ .-......--..+|+|+-|+.++...
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--------~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--------KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch--------HHHHHHHHhcccCccccEEecCCcch
Confidence 225667777777664322 234667888888888644321110 00111222334689999999998754
No 53
>PLN03150 hypothetical protein; Provisional
Probab=91.05 E-value=0.21 Score=51.30 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred eeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccc
Q 045124 116 VVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLD 195 (390)
Q Consensus 116 v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le 195 (390)
+..|+|..+ .-...+|..+..+++|+.|+|++|.+....+.....+++|+.|+|++..+.. .+...+..++.|+
T Consensus 420 v~~L~L~~n----~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQ----GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCC----CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCC
Confidence 566666544 2345678888889999999999998753322356789999999999998873 4666778899999
Q ss_pred eEEEeceec
Q 045124 196 DLYVRGNIA 204 (390)
Q Consensus 196 ~L~l~~c~~ 204 (390)
.|+|.+|..
T Consensus 494 ~L~Ls~N~l 502 (623)
T PLN03150 494 ILNLNGNSL 502 (623)
T ss_pred EEECcCCcc
Confidence 999999875
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=91.00 E-value=0.11 Score=52.61 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCceeEEEEEEccCCChhHHHHH--HHHHHhCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeee
Q 045124 85 LLVIRRFYLHCLQSYDAEVLRDW--VVRGWTNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNIT 154 (390)
Q Consensus 85 ~~~l~~l~l~~~~~~~~~~~~~w--l~~~~~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~ 154 (390)
|++++.|+.......+...+.+. |... -...+.|.+.-. +. ..+.+ |-.++.+.+|++|.|.+|.+
T Consensus 54 g~~~~~f~a~~s~~ads~vl~qLq~i~d~-lqkt~~lkl~~~-pa-~~pt~-pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 54 GAPVDYFRAYVSDNADSRVLEQLQRILDF-LQKTKVLKLLPS-PA-RDPTE-PISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred CCCCceeEEecCCcccchHHHHHHHHHHH-Hhhheeeeeccc-CC-CCCCC-CceeccccceeeEEecCcch
Confidence 46789998887766554444333 2121 133344555322 21 22333 88889999999999999843
No 55
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.96 E-value=0.018 Score=53.94 Aligned_cols=173 Identities=15% Similarity=0.094 Sum_probs=98.7
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCc---ccEEEEcCeeecCCCCCCcccCCcccEE-EeeeEEECCCchHhHhhh
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTA---LEVLKLQGNITLDPDPDQRVIFPSLRIL-HMDVIQLGVSGHHRDLYR 189 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~---L~~L~L~~~~~~~~~~~~~~~~~~Lk~L-~L~~v~~~~~~~l~~ll~ 189 (390)
+..+.|+++.. .....|..+|.... .+..+++++.+..+|. ....++.+.+. .++...+ +.+...++
T Consensus 362 i~tkiL~~s~~-----qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk-~L~~lkelvT~l~lsnn~i---sfv~~~l~ 432 (565)
T KOG0472|consen 362 ITTKILDVSDK-----QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK-RLVELKELVTDLVLSNNKI---SFVPLELS 432 (565)
T ss_pred hhhhhhccccc-----ccccCCHHHHHHhhhcceEEEecccchHhhhhh-hhHHHHHHHHHHHhhcCcc---ccchHHHH
Confidence 34455665433 23456766666543 6677888887777763 23333333333 2332222 34567788
Q ss_pred cCCccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc---eeeecc
Q 045124 190 CCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA---QYILRN 266 (390)
Q Consensus 190 ~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~---~~~~~~ 266 (390)
..++|.-|+++++...++..-+ -..-+|+.|+++ ...|... ....-.--.||.+..+..... ...+.+
T Consensus 433 ~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS----~NrFr~l----P~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLS----FNRFRML----PECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred hhhcceeeecccchhhhcchhh-hhhhhhheeccc----ccccccc----hHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 8899999999888654332100 012348888884 3344211 000001112333333433221 123678
Q ss_pred CCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEEeccccc
Q 045124 267 LNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLALSGCTVG 319 (390)
Q Consensus 267 ~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~ 319 (390)
|.+|..+++ .++....+...+.+|.||+.|.|.+-++.
T Consensus 504 m~nL~tLDL---------------~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDL---------------QNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceecc---------------CCCchhhCChhhccccceeEEEecCCccC
Confidence 888888888 44556788899999999999999997653
No 56
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.62 E-value=0.2 Score=47.29 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=32.3
Q ss_pred CCCCChHHHHHHHccCC-hHHHHHHHHhhhchHHhhc
Q 045124 9 FYGLPDDILRHIIACLP-TKNAVGTSLISRQWIDLWT 44 (390)
Q Consensus 9 is~LPd~iL~~Ils~Lp-~~~~~rts~lSrrWr~lw~ 44 (390)
.|+||+|+|..|..+|| .-|.+|-+.|||.||.-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 67899999999999996 5899999999999998543
No 57
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.40 E-value=0.11 Score=50.13 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=66.0
Q ss_pred CeeEEEEEeccCCCCceecCCCCCccCC-cccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 115 NVVEVDIRVDNINEDNFLDLPSNLCTST-ALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 115 ~v~~L~L~~~~~~~~~~~~lp~~l~~c~-~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
.+..+++... ....+|+.....+ +|+.|++.++.+...+ .....+++|+.|.+....+.+ +.......+.
T Consensus 117 ~l~~L~l~~n-----~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~~~ 187 (394)
T COG4886 117 NLTSLDLDNN-----NITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSD---LPKLLSNLSN 187 (394)
T ss_pred ceeEEecCCc-----ccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhh---hhhhhhhhhh
Confidence 4566666433 3456666666564 8999999988876663 145788999999999887753 4454447889
Q ss_pred cceEEEeceecCCCCeeEEEEcc-ceeEEEe
Q 045124 194 LDDLYVRGNIAEPLPFQFDVVST-SVRNLNS 223 (390)
Q Consensus 194 Le~L~l~~c~~~~~~~~l~i~~~-~L~~L~i 223 (390)
|+.|.+.++....+.. . +.-+ .|+.|.+
T Consensus 188 L~~L~ls~N~i~~l~~-~-~~~~~~L~~l~~ 216 (394)
T COG4886 188 LNNLDLSGNKISDLPP-E-IELLSALEELDL 216 (394)
T ss_pred hhheeccCCccccCch-h-hhhhhhhhhhhh
Confidence 9999998887654433 1 1233 3777777
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.90 E-value=0.011 Score=52.70 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEE
Q 045124 165 FPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEI 244 (390)
Q Consensus 165 ~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i 244 (390)
+.+.|+|++++|.+.+ - .|....|.||.|.|+-+....+.. + ..|.+|+.|-+
T Consensus 18 l~~vkKLNcwg~~L~D-I---sic~kMp~lEVLsLSvNkIssL~p-l-~rCtrLkElYL--------------------- 70 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I---SICEKMPLLEVLSLSVNKISSLAP-L-QRCTRLKELYL--------------------- 70 (388)
T ss_pred HHHhhhhcccCCCccH-H---HHHHhcccceeEEeeccccccchh-H-HHHHHHHHHHH---------------------
Confidence 4566777777776654 1 223345666666666555433322 1 13444444444
Q ss_pred ecCccceEEeeeccc----ceeeeccCCcceeEEeeeeeeeecCCCCccCCCccHHHHHhhhccCCCccEEEE
Q 045124 245 NTQNLVCLELRENFF----AQYILRNLNLLEKADIGIGGVFMCPRGGGFDFDHWSDERISFLPEVYNVNSLAL 313 (390)
Q Consensus 245 ~ap~L~~L~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~f~~~~~~~~l~~lL~~~p~L~~L~l 313 (390)
..+.. ....+.++|+|+.++|....- |.. ...+--..+|+..|||++|+=
T Consensus 71 ----------RkN~I~sldEL~YLknlpsLr~LWL~ENPC--c~~-------ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 71 ----------RKNCIESLDELEYLKNLPSLRTLWLDENPC--CGE-------AGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ----------HhcccccHHHHHHHhcCchhhhHhhccCCc--ccc-------cchhHHHHHHHHcccchhccC
Confidence 32211 123477888888888864331 111 112445678999999999973
No 59
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=89.76 E-value=0.085 Score=54.64 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=45.4
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
...+|..+-.|..|++|..+++.+...| ....+|.||.++++...+.. ..+...+-. |+|++|+++++..
T Consensus 419 L~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~-~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 419 LTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSE-VTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhh-hhhhhhCCC-cccceeeccCCcc
Confidence 4456666666677777776666666666 66677777777777766654 334433332 7788888877764
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.42 E-value=0.19 Score=50.38 Aligned_cols=41 Identities=27% Similarity=0.592 Sum_probs=37.7
Q ss_pred CCCCCCcCCCCChHHHHHHHccCChHHHHHHHHhhhchHHh
Q 045124 2 PPRRRNFFYGLPDDILRHIIACLPTKNAVGTSLISRQWIDL 42 (390)
Q Consensus 2 ~~~~~D~is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~l 42 (390)
+....|.++.||-|+..+|+++|+.++.++.+.+|+.|+.+
T Consensus 101 ~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 101 PLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 44567999999999999999999999999999999999875
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.11 E-value=0.072 Score=47.12 Aligned_cols=71 Identities=20% Similarity=0.068 Sum_probs=34.7
Q ss_pred chHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc
Q 045124 182 GHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF 259 (390)
Q Consensus 182 ~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~ 259 (390)
..+..+....-.|+.|++.++....+.. + -..|+||.|.+ .++.+... .+...++..+|+|++++++++..
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~~~-~-P~Lp~LkkL~l----sdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTLTN-F-PKLPKLKKLEL----SDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CCcccccccccchhhhhhhccceeeccc-C-CCcchhhhhcc----cCCccccc-ccceehhhhCCceeEEeecCCcc
Confidence 3344444455555555555555432222 1 13456666666 33311111 22234445667777777777543
No 62
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=88.54 E-value=0.75 Score=41.84 Aligned_cols=127 Identities=17% Similarity=0.073 Sum_probs=75.4
Q ss_pred CCcccEEEEcCeee--------cCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCC----
Q 045124 141 STALEVLKLQGNIT--------LDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLP---- 208 (390)
Q Consensus 141 c~~L~~L~L~~~~~--------~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~---- 208 (390)
|..|+.|..++-.. .+.-+-....|++|+++.++.|.. ..+..+...=|.|..+.+++....+..
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~---~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST---ENIVDIELLKPTLQTICVHNTTIQDVPSLLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch---hheeceeecCchhheeeeecccccccccccc
Confidence 66888888876421 111111445689999999998764 567888888999999999876421110
Q ss_pred ----------------eeEEEEcc---ceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeecccc-eeeeccCC
Q 045124 209 ----------------FQFDVVST---SVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFFA-QYILRNLN 268 (390)
Q Consensus 209 ----------------~~l~i~~~---~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~~-~~~~~~~~ 268 (390)
..+....+ .|..|.+++ +..... ....--+|.++.|+++.+... ...+..++
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~----N~I~~i----DESvKL~Pkir~L~lS~N~i~~v~nLa~L~ 329 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSG----NLITQI----DESVKLAPKLRRLILSQNRIRTVQNLAELP 329 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccc----cchhhh----hhhhhhccceeEEeccccceeeehhhhhcc
Confidence 00222233 366666632 221110 123335788888888765431 12366788
Q ss_pred cceeEEeeee
Q 045124 269 LLEKADIGIG 278 (390)
Q Consensus 269 ~L~~l~l~~~ 278 (390)
+|++++++..
T Consensus 330 ~L~~LDLS~N 339 (490)
T KOG1259|consen 330 QLQLLDLSGN 339 (490)
T ss_pred cceEeecccc
Confidence 8888888654
No 63
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.72 E-value=0.057 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcccccceEEEE
Q 045124 359 HELQVIEYLLKNARVLRRMDIY 380 (390)
Q Consensus 359 ~e~~~~~~ll~~a~~Le~l~i~ 380 (390)
++++.+-=+++|.++|+.+.+.
T Consensus 515 Ndlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 515 NDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred CchhhCChhhccccceeEEEec
Confidence 4567777788888888888775
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.66 E-value=0.53 Score=42.22 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=21.5
Q ss_pred cCCcccEEEeeeEEECC--CchHhHhhhcCCccceEEEeceec
Q 045124 164 IFPSLRILHMDVIQLGV--SGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 164 ~~~~Lk~L~L~~v~~~~--~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
.||+|++.+|+...|+. +.-+..++++...|++|.+.+|..
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34444444444443332 234566666666666666666654
No 65
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=86.40 E-value=0.19 Score=53.38 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=66.2
Q ss_pred CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCc
Q 045124 114 NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPV 193 (390)
Q Consensus 114 ~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~ 193 (390)
+.+..|+|+.+ ....+||..+...-+|+.|+|++..+..+|. ....++.|.+|++..+... ..+..+....+.
T Consensus 571 ~~LrVLDLs~~----~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l--~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 571 PLLRVLDLSGN----SSLSKLPSSIGELVHLRYLDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRL--ESIPGILLELQS 643 (889)
T ss_pred cceEEEECCCC----CccCcCChHHhhhhhhhcccccCCCccccch-HHHHHHhhheecccccccc--ccccchhhhccc
Confidence 56788888654 4568999999999999999999988877774 6678899999999987654 234566667899
Q ss_pred cceEEEecee
Q 045124 194 LDDLYVRGNI 203 (390)
Q Consensus 194 Le~L~l~~c~ 203 (390)
|+.|.+..-.
T Consensus 644 Lr~L~l~~s~ 653 (889)
T KOG4658|consen 644 LRVLRLPRSA 653 (889)
T ss_pred ccEEEeeccc
Confidence 9999997764
No 66
>PF13013 F-box-like_2: F-box-like domain
Probab=84.29 E-value=1 Score=34.66 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=26.0
Q ss_pred cCCCCChHHHHHHHccCChHHHHHHHHhhh
Q 045124 8 FFYGLPDDILRHIIACLPTKNAVGTSLISR 37 (390)
Q Consensus 8 ~is~LPd~iL~~Ils~Lp~~~~~rts~lSr 37 (390)
.+.+||+||+..|+.+-...+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999877766666
No 67
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=81.46 E-value=0.61 Score=49.69 Aligned_cols=87 Identities=18% Similarity=0.086 Sum_probs=59.0
Q ss_pred ecCCCCCcc-CCcccEEEEcCeee-cCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCC-CC
Q 045124 132 LDLPSNLCT-STALEVLKLQGNIT-LDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEP-LP 208 (390)
Q Consensus 132 ~~lp~~l~~-c~~L~~L~L~~~~~-~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~~ 208 (390)
...+..+|. -+.|++|+|++|.- ..+|. ....+-+||.|+|++..+.. +..=+.....|.+|++....... ..
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~---LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISH---LPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccc---cchHHHHHHhhheecccccccccccc
Confidence 444555455 49999999998763 45662 44459999999999988864 33334456789999998876521 11
Q ss_pred eeEEEEccceeEEEe
Q 045124 209 FQFDVVSTSVRNLNS 223 (390)
Q Consensus 209 ~~l~i~~~~L~~L~i 223 (390)
. +.-..++||.|.+
T Consensus 636 ~-i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 636 G-ILLELQSLRVLRL 649 (889)
T ss_pred c-hhhhcccccEEEe
Confidence 1 1113578999988
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.90 E-value=0.6 Score=25.54 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=4.7
Q ss_pred CcccEEEeeeE
Q 045124 166 PSLRILHMDVI 176 (390)
Q Consensus 166 ~~Lk~L~L~~v 176 (390)
|+|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=78.34 E-value=0.36 Score=38.75 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=42.8
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
..|+..+|+++.+.++|++...-||-+++|+|....+.+ +..-+++.|.|+.|+++++..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd---vPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD---VPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh---chHHHhhhHHhhhcccccCcc
Confidence 345566777777777776556677888888888877764 323377788888888888776
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=78.16 E-value=0.28 Score=47.77 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=64.2
Q ss_pred CccCCcccEEEEcCeeecCCCCCC-cccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEcc
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQ-RVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVST 216 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~-~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~ 216 (390)
+..+.+|+.|.+..+.+..+. . ...+++|+.|+|+...+..-..+ ..++.|+.|++.++....+.. +. ..+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~--~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~-~~-~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE--NLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISG-LE-SLK 162 (414)
T ss_pred cccccceeeeeccccchhhcc--cchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccC-Cc-cch
Confidence 445678888888888776655 4 56788888888888877653333 335558888888887654443 22 245
Q ss_pred ceeEEEeeeeeccCCCCCCCCCcceE-EEecCccceEEeeec
Q 045124 217 SVRNLNSEFYLEDKHFDNEDNVSLTF-EINTQNLVCLELREN 257 (390)
Q Consensus 217 ~L~~L~i~~~~~~~~~~~~~~~~~~~-~i~ap~L~~L~~~~~ 257 (390)
.|+.+.+ ..+..... ... ....++|+.+.+.+.
T Consensus 163 ~L~~l~l----~~n~i~~i----e~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 163 SLKLLDL----SYNRIVDI----ENDELSELISLEELDLGGN 196 (414)
T ss_pred hhhcccC----Ccchhhhh----hhhhhhhccchHHHhccCC
Confidence 6677777 44443321 110 234556666666664
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=77.67 E-value=1.4 Score=21.40 Aligned_cols=12 Identities=33% Similarity=0.371 Sum_probs=5.3
Q ss_pred cccEEEEcCeee
Q 045124 143 ALEVLKLQGNIT 154 (390)
Q Consensus 143 ~L~~L~L~~~~~ 154 (390)
+|+.|+|++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455666665543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=0.93 Score=38.83 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCC---C
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEP---L 207 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~---~ 207 (390)
.+.+|..-..--.++.++=+++.+....-....++++++.|++..|...++..++.+-.-.|+|++|+|++|.-.. +
T Consensus 90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 3455554333334455544444332111114556788888888888776667777776678888888888886511 1
Q ss_pred CeeEEEEccceeEEEe
Q 045124 208 PFQFDVVSTSVRNLNS 223 (390)
Q Consensus 208 ~~~l~i~~~~L~~L~i 223 (390)
.. + -..++||.|.+
T Consensus 170 ~~-L-~~lknLr~L~l 183 (221)
T KOG3864|consen 170 AC-L-LKLKNLRRLHL 183 (221)
T ss_pred HH-H-HHhhhhHHHHh
Confidence 11 1 13456666666
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=0.32 Score=43.71 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=39.2
Q ss_pred CcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEecee
Q 045124 142 TALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNI 203 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~ 203 (390)
+.|++|.|+-+.+..+. ...+|++||+|.|....+.+ -+=-.-+.+.|+|+.|-|..+.
T Consensus 41 p~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred ccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCC
Confidence 56777777777665554 56678888888888777754 2222335677888888777653
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=76.72 E-value=4 Score=39.36 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=29.3
Q ss_pred hCCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCee-ecCCCCCCcccCCcccEEEee
Q 045124 113 TNNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNI-TLDPDPDQRVIFPSLRILHMD 174 (390)
Q Consensus 113 ~~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~-~~~~~~~~~~~~~~Lk~L~L~ 174 (390)
-.++++|.+..+ .....+|..+ .++|++|.+.+|. +..+| ++|++|.+.
T Consensus 71 P~sLtsL~Lsnc----~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~ 120 (426)
T PRK15386 71 PNELTEITIENC----NNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLEIK 120 (426)
T ss_pred CCCCcEEEccCC----CCcccCCchh--hhhhhheEccCcccccccc-------cccceEEeC
Confidence 357888888655 2233444433 3588999998883 33333 346666664
No 75
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=76.27 E-value=1.3 Score=41.98 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=15.6
Q ss_pred HHHHHHHHhcccccceEEEEE
Q 045124 361 LQVIEYLLKNARVLRRMDIYA 381 (390)
Q Consensus 361 ~~~~~~ll~~a~~Le~l~i~~ 381 (390)
.-+..+.+.|...|-+++|++
T Consensus 477 ~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 477 SSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred ehhhcccccchhhhheeEEec
Confidence 356677778888888888775
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=73.45 E-value=1.5 Score=42.62 Aligned_cols=79 Identities=16% Similarity=0.008 Sum_probs=47.9
Q ss_pred CccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeE-EEEcc
Q 045124 138 LCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQF-DVVST 216 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l-~i~~~ 216 (390)
+..+++|++|+|+++.+.+.. ....++.|+.|++.+..+.+-..+. .++.|+.|++.++....... . .....
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~----~l~~L~~l~l~~n~i~~ie~-~~~~~~~ 186 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLE----SLKSLKLLDLSYNRIVDIEN-DELSELI 186 (414)
T ss_pred hhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCc----cchhhhcccCCcchhhhhhh-hhhhhcc
Confidence 455677888888877766665 5566777888888877765422222 26777777777776533221 1 02234
Q ss_pred ceeEEEe
Q 045124 217 SVRNLNS 223 (390)
Q Consensus 217 ~L~~L~i 223 (390)
+++.+.+
T Consensus 187 ~l~~l~l 193 (414)
T KOG0531|consen 187 SLEELDL 193 (414)
T ss_pred chHHHhc
Confidence 5666666
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=67.93 E-value=3.4 Score=21.46 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=11.0
Q ss_pred cccEEEEcCeeecCCC
Q 045124 143 ALEVLKLQGNITLDPD 158 (390)
Q Consensus 143 ~L~~L~L~~~~~~~~~ 158 (390)
+|++|+|++|.+..+|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 4677888887665554
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.80 E-value=1.7 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=5.3
Q ss_pred CcccEEEeeeEEEC
Q 045124 166 PSLRILHMDVIQLG 179 (390)
Q Consensus 166 ~~Lk~L~L~~v~~~ 179 (390)
++|++|+|+++.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444443
No 79
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=65.50 E-value=1.9 Score=40.89 Aligned_cols=35 Identities=26% Similarity=0.039 Sum_probs=16.0
Q ss_pred CCcccEEEEcCeeecCCCCCCcccCCcccEEEeee
Q 045124 141 STALEVLKLQGNITLDPDPDQRVIFPSLRILHMDV 175 (390)
Q Consensus 141 c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~ 175 (390)
.++|++|+|+.+.+..+.++.+.++++|.+|-+.+
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 34555555554444333333444444444444444
No 80
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=63.23 E-value=0.37 Score=47.55 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=61.8
Q ss_pred CCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEE
Q 045124 134 LPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDV 213 (390)
Q Consensus 134 lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i 213 (390)
+|..+.....|+.|+|+.+.+...| ....+=-||.|-+....+.. +..=+..-+.|.+|+.+.|....+..|+ .
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp--~~lC~lpLkvli~sNNkl~~---lp~~ig~~~tl~~ld~s~nei~slpsql-~ 186 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLP--DGLCDLPLKVLIVSNNKLTS---LPEEIGLLPTLAHLDVSKNEIQSLPSQL-G 186 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCC--hhhhcCcceeEEEecCcccc---CCcccccchhHHHhhhhhhhhhhchHHh-h
Confidence 4444555556666666666554444 33344446666666555432 1111224566666666666553332211 2
Q ss_pred EccceeEEEeeeeeccCCCCCCCCCcceEEEecCccceEEeeeccc--ceeeeccCCcceeEEeee
Q 045124 214 VSTSVRNLNSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELRENFF--AQYILRNLNLLEKADIGI 277 (390)
Q Consensus 214 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~~~~~--~~~~~~~~~~L~~l~l~~ 277 (390)
...+|+.|.+ ..++.... +..+. + -.|..|+++.+.. .+..+.+|.+|+.+.++-
T Consensus 187 ~l~slr~l~v----rRn~l~~l---p~El~-~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 187 YLTSLRDLNV----RRNHLEDL---PEELC-S-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred hHHHHHHHHH----hhhhhhhC---CHHHh-C-CceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 3445666666 33333221 11222 2 2366666665433 133455666666666543
No 81
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=58.16 E-value=8.3 Score=28.86 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.3
Q ss_pred CcCCCCChHHHHHHHccCChHHHHH
Q 045124 7 NFFYGLPDDILRHIIACLPTKNAVG 31 (390)
Q Consensus 7 D~is~LPd~iL~~Ils~Lp~~~~~r 31 (390)
..++.||-||-..||++|+.+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999998754
No 82
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=54.42 E-value=3.3 Score=42.50 Aligned_cols=63 Identities=22% Similarity=0.091 Sum_probs=38.5
Q ss_pred CCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 137 NLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 137 ~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
.+-.|+.|++|+|+.+.+..+|.....+|+ |..|.|.+..+.+ +.. +.+..+|+.|++.++-.
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t---L~g-ie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT---LRG-IENLKSLYGLDLSYNLL 266 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh---hhh-HHhhhhhhccchhHhhh
Confidence 445577777777777766666654555666 7777777665543 222 23456677777766644
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=52.32 E-value=0.27 Score=39.50 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=59.7
Q ss_pred ccEEEEcCeeecCCCC--CCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceecCCCCeeEEEEccceeEE
Q 045124 144 LEVLKLQGNITLDPDP--DQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIAEPLPFQFDVVSTSVRNL 221 (390)
Q Consensus 144 L~~L~L~~~~~~~~~~--~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~~~~l~i~~~~L~~L 221 (390)
+..++|++|.+..++. .....-..|++.+|++..+.+ .=.++..-+|.+++|++.++...+... =--.-|.|++|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neisdvPe-E~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEISDVPE-ELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhhhchH-HHhhhHHhhhc
Confidence 4455777775433221 123345677777888766642 224666778999999999998744432 10145889999
Q ss_pred EeeeeeccCCCCCCCCCcceEEEecCccceEEee
Q 045124 222 NSEFYLEDKHFDNEDNVSLTFEINTQNLVCLELR 255 (390)
Q Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~i~ap~L~~L~~~ 255 (390)
++ ..+.+.. ...+-+| |..|++-
T Consensus 106 Nl----~~N~l~~------~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 106 NL----RFNPLNA------EPRVIAP-LIKLDML 128 (177)
T ss_pred cc----ccCcccc------chHHHHH-HHhHHHh
Confidence 99 5555542 3444555 6666553
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.80 E-value=4.4 Score=34.86 Aligned_cols=66 Identities=17% Similarity=-0.025 Sum_probs=37.2
Q ss_pred CccCCcccEEEEcCeeecC-CC-CCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 138 LCTSTALEVLKLQGNITLD-PD-PDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 138 l~~c~~L~~L~L~~~~~~~-~~-~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
+..+++++.|.+.+|...+ .- ......+|+|+.|+|++|.--++..+.. +...++|+.|.|.+-..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchh
Confidence 3445677777777765322 00 0011256778888888664444344444 44577777777766543
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=43.15 E-value=20 Score=27.85 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=26.8
Q ss_pred ccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEec
Q 045124 139 CTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRG 201 (390)
Q Consensus 139 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~ 201 (390)
..|.+|+.+.+... ...++...+.++++|+++++... +. .--...+.+|+.|+.+.+..
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECCC-eeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc
Confidence 45667777777642 22233234556667777777642 21 11223456677777777743
No 86
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.86 E-value=13 Score=26.95 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=27.2
Q ss_pred CChHHHHHHHccCChHHHHHHHHhhhc--hHHhhccc
Q 045124 12 LPDDILRHIIACLPTKNAVGTSLISRQ--WIDLWTEV 46 (390)
Q Consensus 12 LPd~iL~~Ils~Lp~~~~~rts~lSrr--Wr~lw~~~ 46 (390)
+||+.=.....++-++|.++..-|.++ |+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 566666666677888999998888664 89999966
No 87
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=37.30 E-value=56 Score=29.81 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=27.0
Q ss_pred HHHHHHh-CCeeEEEEEeccCCCCceecCCCCCccCCcccEEEEcCee
Q 045124 107 WVVRGWT-NNVVEVDIRVDNINEDNFLDLPSNLCTSTALEVLKLQGNI 153 (390)
Q Consensus 107 wl~~~~~-~~v~~L~L~~~~~~~~~~~~lp~~l~~c~~L~~L~L~~~~ 153 (390)
.+...+. +.++.++|+-+.++......+-.-+.+...|+||.|++|.
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 3333333 5677777765544433333344445556778888888774
No 88
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=30.52 E-value=11 Score=34.78 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCCChHHHHHHHccCChHHHHHHHHhhhchHHhhccc
Q 045124 9 FYGLPDDILRHIIACLPTKNAVGTSLISRQWIDLWTEV 46 (390)
Q Consensus 9 is~LPd~iL~~Ils~Lp~~~~~rts~lSrrWr~lw~~~ 46 (390)
+..+|+++++.|++++.-+++++++.+|+|-..+-+..
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~ 45 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHL 45 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcc
Confidence 45689999999999999999999999999987654333
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.48 E-value=62 Score=32.35 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=12.7
Q ss_pred HHHHhhhccCCCccEEE
Q 045124 296 DERISFLPEVYNVNSLA 312 (390)
Q Consensus 296 ~~l~~lL~~~p~L~~L~ 312 (390)
+-+..+.+.+|+|-.|+
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 45667778899988774
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=29.96 E-value=23 Score=19.60 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=9.8
Q ss_pred CcccEEEeeeEEECC
Q 045124 166 PSLRILHMDVIQLGV 180 (390)
Q Consensus 166 ~~Lk~L~L~~v~~~~ 180 (390)
++|++|+|++..+.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456777777666654
No 91
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=29.66 E-value=1.6e+02 Score=23.21 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcccCCCceeEEEEEEccCCChhHHHHHHHHHHhCCeeEEEEEeccCCCCceecCCC--CCccCCcccEEE
Q 045124 71 SFQEFVSDILDRVNLLVIRRFYLHCLQSYDAEVLRDWVVRGWTNNVVEVDIRVDNINEDNFLDLPS--NLCTSTALEVLK 148 (390)
Q Consensus 71 ~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~~~~~~v~~L~L~~~~~~~~~~~~lp~--~l~~c~~L~~L~ 148 (390)
.|.+.+..++.....-.+++|.+... ....+...+...-...+++|.+ .. . .....+.. .+-.+++++.+.
T Consensus 2 ~~~~~l~~~l~s~~~l~vk~l~i~~~---~~~~~~~iL~~l~p~~L~~i~i-~~-~--~~~~~~~~i~~~eqWk~~k~~~ 74 (142)
T PF01827_consen 2 KFFEKLQEILKSKHKLKVKKLKINSL---NQSEVLSILPFLDPGVLEEIRI-ND-E--EEEEDFDEIVELEQWKNAKEFK 74 (142)
T ss_pred hHHHHHHHHHcCCCCeeEEEEEEEcC---CHHHHHHHHhcCCCCcCEEEEC-cC-c--ccccchhheeehHHhceeheeE
Confidence 35667777777722234677777653 3467777777766667899999 11 1 11112211 122367888888
Q ss_pred EcCeeecCCCCCCcccCCcccEEEeeeEEECCCchH---hHhhhcCCccceEEE
Q 045124 149 LQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHH---RDLYRCCPVLDDLYV 199 (390)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l---~~ll~~cp~Le~L~l 199 (390)
+.+...... ...+|.++....+.--.+.. .++ .+.+..-|.++.-.+
T Consensus 75 i~~~~~~~~---~l~~f~h~~~~~i~~~~~t~-~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 75 IGGFVIDSF---PLENFSHFEKFNIHFESITV-EDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred ecccccccH---HHHhCCCccEEEEEEEeCCH-HHHHHHHHHHcCCCCceEEEE
Confidence 876543211 24567777777775445543 343 334445566666555
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=27.76 E-value=40 Score=17.90 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=11.6
Q ss_pred CcccEEEEcCeeecCCC
Q 045124 142 TALEVLKLQGNITLDPD 158 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~ 158 (390)
++|++|+|.+|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 36777888777665555
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=27.76 E-value=40 Score=17.90 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=11.6
Q ss_pred CcccEEEEcCeeecCCC
Q 045124 142 TALEVLKLQGNITLDPD 158 (390)
Q Consensus 142 ~~L~~L~L~~~~~~~~~ 158 (390)
++|++|+|.+|.+..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 36777888777665555
No 94
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=24.66 E-value=71 Score=28.82 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=33.8
Q ss_pred CcCCCCChHHHHHHHccCCh-HHHHHHHH-------hhhchHHhhcccccceEEEeeCCC
Q 045124 7 NFFYGLPDDILRHIIACLPT-KNAVGTSL-------ISRQWIDLWTEVEFHQLALDDSDL 58 (390)
Q Consensus 7 D~is~LPd~iL~~Ils~Lp~-~~~~rts~-------lSrrWr~lw~~~~~~~L~~~~~~~ 58 (390)
=.+.+||.|++..|+-+||- +|++.++. +|. =+.+|+.+ -...|.+..+
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~-e~~iWkkL--cqfHF~erQi 256 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE-ERRIWKKL--CQFHFNERQI 256 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH-HHHHHHHH--HHHHhhHHHH
Confidence 36899999999999999973 55555443 333 35677777 5666655543
No 95
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=22.96 E-value=16 Score=36.68 Aligned_cols=69 Identities=22% Similarity=0.121 Sum_probs=36.8
Q ss_pred eecCCCCCccCCcccEEEEcCeeecCCCCCCcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEeceec
Q 045124 131 FLDLPSNLCTSTALEVLKLQGNITLDPDPDQRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGNIA 204 (390)
Q Consensus 131 ~~~lp~~l~~c~~L~~L~L~~~~~~~~~~~~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c~~ 204 (390)
...+|..+..-.+|.+|+.+.|....+|+ ....+.+|+.|++.+..+.+ -.+++. |=.|..|+++++..
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~--lp~El~--~LpLi~lDfScNki 223 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLED--LPEELC--SLPLIRLDFSCNKI 223 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhh--CCHHHh--CCceeeeecccCce
Confidence 34556666655666666666665555543 44456666666666554432 112222 55555666655544
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.65 E-value=20 Score=35.66 Aligned_cols=69 Identities=16% Similarity=0.102 Sum_probs=45.5
Q ss_pred CcccCCcccEEEeeeEEECCCchHhHhhhcCCccceEEEece--ecCCC-CeeEEEEccceeEEEeeeeeccCCCCC
Q 045124 161 QRVIFPSLRILHMDVIQLGVSGHHRDLYRCCPVLDDLYVRGN--IAEPL-PFQFDVVSTSVRNLNSEFYLEDKHFDN 234 (390)
Q Consensus 161 ~~~~~~~Lk~L~L~~v~~~~~~~l~~ll~~cp~Le~L~l~~c--~~~~~-~~~l~i~~~~L~~L~i~~~~~~~~~~~ 234 (390)
....+|.+..++|+..++-.-+.+..+....|.|..|+|+++ ..... +. -.+....|++|.+ .++..+.
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~K~k~l~Leel~l----~GNPlc~ 284 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-DKLKGLPLEELVL----EGNPLCT 284 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-hhhcCCCHHHeee----cCCcccc
Confidence 345678888888888877765677778888888888888887 22111 11 1234566777877 5555543
No 97
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=20.80 E-value=1.3e+02 Score=22.17 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=18.8
Q ss_pred CCcCCCCChHHHHHHHccCChHHHHHH
Q 045124 6 RNFFYGLPDDILRHIIACLPTKNAVGT 32 (390)
Q Consensus 6 ~D~is~LPd~iL~~Ils~Lp~~~~~rt 32 (390)
...++.||++-+..|++.++..+++..
T Consensus 43 ~~il~~l~~~~~a~il~~m~~dd~~~l 69 (102)
T PF03448_consen 43 AEILEALSPEEAAEILAEMDSDDAADL 69 (102)
T ss_dssp CHCCCCS-HHHHHHHHCCS-HHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHccChHHHHHH
Confidence 456778888888888888888777744
Done!